Query psy9563
Match_columns 192
No_of_seqs 112 out of 1045
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:50:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1E-44 3.6E-49 370.5 16.2 186 1-192 1404-1591(3245)
2 4akg_A Glutathione S-transfera 100.0 5.4E-43 1.8E-47 356.2 16.2 186 1-192 1366-1554(2695)
3 4akg_A Glutathione S-transfera 97.9 0.00011 3.7E-09 76.6 12.9 133 19-172 746-878 (2695)
4 3vkg_A Dynein heavy chain, cyt 97.2 0.0022 7.6E-08 67.8 11.5 137 20-173 707-861 (3245)
5 2r44_A Uncharacterized protein 92.5 0.37 1.3E-05 39.5 7.4 49 20-68 150-200 (331)
6 1r6b_X CLPA protein; AAA+, N-t 91.0 2.2 7.6E-05 39.1 11.6 137 20-160 315-465 (758)
7 3m6a_A ATP-dependent protease 89.4 0.33 1.1E-05 43.3 4.4 46 18-67 222-267 (543)
8 1xwi_A SKD1 protein; VPS4B, AA 86.0 0.88 3E-05 37.5 4.8 46 19-68 148-194 (322)
9 3pxg_A Negative regulator of g 83.9 0.45 1.5E-05 41.5 2.1 49 20-68 291-340 (468)
10 3f9v_A Minichromosome maintena 81.9 1.7 5.9E-05 39.1 5.2 50 19-70 433-494 (595)
11 3u61_B DNA polymerase accessor 81.4 1.5 5.2E-05 35.5 4.4 45 19-67 135-179 (324)
12 2zan_A Vacuolar protein sortin 81.3 1.4 4.8E-05 38.1 4.3 46 19-68 270-316 (444)
13 3pxi_A Negative regulator of g 80.8 0.66 2.3E-05 42.8 2.1 49 20-68 291-340 (758)
14 1r6b_X CLPA protein; AAA+, N-t 79.3 2.1 7.3E-05 39.2 5.1 64 3-68 583-668 (758)
15 2qp9_X Vacuolar protein sortin 79.3 1.7 5.9E-05 36.2 4.1 46 19-68 186-232 (355)
16 3syl_A Protein CBBX; photosynt 77.2 1.6 5.4E-05 35.0 3.2 90 20-127 169-260 (309)
17 3cf0_A Transitional endoplasmi 76.0 3.8 0.00013 33.1 5.2 46 19-68 153-201 (301)
18 3h4m_A Proteasome-activating n 74.6 3.2 0.00011 32.8 4.3 46 19-68 155-203 (285)
19 1ofh_A ATP-dependent HSL prote 74.3 2.9 9.9E-05 33.2 4.0 46 18-63 166-212 (310)
20 3eie_A Vacuolar protein sortin 73.6 3 0.0001 34.0 4.0 46 19-68 153-199 (322)
21 2qz4_A Paraplegin; AAA+, SPG7, 73.0 5.4 0.00018 30.8 5.2 46 19-68 144-192 (262)
22 1jbk_A CLPB protein; beta barr 72.8 0.56 1.9E-05 34.1 -0.6 42 20-61 151-193 (195)
23 3vfd_A Spastin; ATPase, microt 72.5 3.5 0.00012 34.6 4.2 46 19-68 251-297 (389)
24 1qvr_A CLPB protein; coiled co 71.8 1.1 3.9E-05 41.9 1.0 50 20-69 299-348 (854)
25 3d8b_A Fidgetin-like protein 1 67.0 5.5 0.00019 33.1 4.2 46 19-68 220-266 (357)
26 2chg_A Replication factor C sm 66.9 7.1 0.00024 28.7 4.5 45 20-68 132-176 (226)
27 1lv7_A FTSH; alpha/beta domain 66.5 12 0.00041 28.9 6.0 45 19-67 149-196 (257)
28 4b4t_M 26S protease regulatory 64.0 12 0.00041 32.4 5.9 47 19-69 319-368 (434)
29 4fcw_A Chaperone protein CLPB; 63.7 5.8 0.0002 31.6 3.6 56 14-69 154-232 (311)
30 3pfi_A Holliday junction ATP-d 63.6 6.9 0.00024 31.7 4.1 45 20-68 154-199 (338)
31 4b4t_J 26S protease regulatory 61.4 9.8 0.00033 32.7 4.8 47 18-68 285-334 (405)
32 3pxi_A Negative regulator of g 60.7 4.7 0.00016 37.0 2.9 53 16-68 616-677 (758)
33 1g8p_A Magnesium-chelatase 38 59.8 12 0.00043 30.0 5.0 45 19-66 186-232 (350)
34 2qby_B CDC6 homolog 3, cell di 59.5 30 0.001 28.0 7.5 51 19-70 163-214 (384)
35 2v1u_A Cell division control p 58.1 17 0.00059 29.4 5.7 48 20-68 167-216 (387)
36 4b4t_I 26S protease regulatory 57.4 17 0.00057 31.7 5.6 46 19-68 320-368 (437)
37 1hqc_A RUVB; extended AAA-ATPa 57.2 19 0.00064 28.7 5.6 45 19-67 137-182 (324)
38 2bjv_A PSP operon transcriptio 56.0 9.2 0.00032 29.8 3.5 88 18-127 139-238 (265)
39 3b9p_A CG5977-PA, isoform A; A 55.2 12 0.00042 29.5 4.2 46 19-68 158-204 (297)
40 4b4t_L 26S protease subunit RP 53.2 21 0.00073 30.8 5.6 48 18-69 318-368 (437)
41 4b4t_H 26S protease regulatory 52.0 15 0.0005 32.3 4.4 47 18-68 346-395 (467)
42 2chq_A Replication factor C sm 49.4 19 0.00066 28.3 4.5 45 19-67 131-175 (319)
43 3t15_A Ribulose bisphosphate c 49.4 22 0.00075 28.4 4.8 71 18-99 153-227 (293)
44 1j5w_A Glycyl-tRNA synthetase 49.0 20 0.00068 29.2 4.3 49 21-69 62-111 (298)
45 2zsh_B Della protein GAI; plan 48.6 5.7 0.00019 27.7 0.9 17 109-127 70-86 (110)
46 3bos_A Putative DNA replicatio 48.2 20 0.00068 26.7 4.2 47 22-68 140-189 (242)
47 2z0h_A DTMP kinase, thymidylat 48.0 5.4 0.00018 29.4 0.8 44 23-66 2-50 (197)
48 3rf1_A Glycyl-tRNA synthetase 47.4 21 0.00071 29.2 4.2 49 21-69 74-123 (311)
49 1njg_A DNA polymerase III subu 46.5 24 0.00082 25.9 4.4 45 20-68 156-200 (250)
50 3umf_A Adenylate kinase; rossm 45.8 3 0.0001 32.6 -0.9 34 18-51 26-59 (217)
51 3sr0_A Adenylate kinase; phosp 45.7 2.7 9.1E-05 32.5 -1.2 28 24-51 3-30 (206)
52 2r62_A Cell division protease 45.3 11 0.00039 29.2 2.4 44 20-67 151-197 (268)
53 1sxj_B Activator 1 37 kDa subu 44.4 25 0.00085 27.7 4.4 46 19-68 136-181 (323)
54 3pvs_A Replication-associated 43.1 26 0.0009 30.1 4.6 47 20-68 134-180 (447)
55 3te6_A Regulatory protein SIR3 40.6 16 0.00054 30.2 2.6 50 20-69 163-214 (318)
56 2pbr_A DTMP kinase, thymidylat 40.4 10 0.00035 27.6 1.3 37 23-59 2-43 (195)
57 1ixz_A ATP-dependent metallopr 40.4 46 0.0016 25.5 5.3 43 21-67 155-200 (254)
58 1iqp_A RFCS; clamp loader, ext 40.2 33 0.0011 27.0 4.5 44 20-67 140-183 (327)
59 4b4t_K 26S protease regulatory 39.9 42 0.0014 28.9 5.3 47 18-68 309-359 (428)
60 3hu3_A Transitional endoplasmi 38.6 37 0.0013 29.6 4.8 46 19-68 339-387 (489)
61 2ce7_A Cell division protein F 38.0 40 0.0014 29.4 4.9 45 19-67 153-200 (476)
62 2qby_A CDC6 homolog 1, cell di 35.1 93 0.0032 24.8 6.6 50 20-70 163-214 (386)
63 2dhr_A FTSH; AAA+ protein, hex 32.7 2E+02 0.0069 25.0 8.7 44 20-67 169-215 (499)
64 1l8q_A Chromosomal replication 32.3 42 0.0014 26.8 4.0 47 21-68 132-181 (324)
65 3uk6_A RUVB-like 2; hexameric 32.0 92 0.0031 25.0 6.1 34 35-68 241-274 (368)
66 1sxj_D Activator 1 41 kDa subu 31.5 43 0.0015 26.7 3.9 44 20-67 163-206 (353)
67 1sxj_E Activator 1 40 kDa subu 31.3 71 0.0024 25.5 5.2 45 20-68 164-208 (354)
68 2plr_A DTMP kinase, probable t 29.9 14 0.00047 27.3 0.5 42 22-63 5-50 (213)
69 2z4s_A Chromosomal replication 27.2 35 0.0012 29.1 2.7 48 21-68 228-278 (440)
70 2x8a_A Nuclear valosin-contain 27.0 65 0.0022 25.4 4.2 44 20-67 146-192 (274)
71 1nks_A Adenylate kinase; therm 26.2 10 0.00036 27.5 -0.7 29 22-50 2-35 (194)
72 1fnn_A CDC6P, cell division co 26.1 64 0.0022 26.0 4.1 50 19-69 158-209 (389)
73 4eaq_A DTMP kinase, thymidylat 26.0 22 0.00074 27.5 1.1 51 15-65 20-74 (229)
74 1ly1_A Polynucleotide kinase; 23.7 14 0.00047 26.5 -0.5 29 23-51 4-33 (181)
75 1iy2_A ATP-dependent metallopr 23.2 1.1E+02 0.0038 23.6 4.9 43 21-67 179-224 (278)
76 1jr3_A DNA polymerase III subu 22.5 96 0.0033 24.8 4.5 45 20-68 149-193 (373)
77 3cf2_A TER ATPase, transitiona 21.9 89 0.003 29.2 4.5 46 19-68 339-387 (806)
78 3kb2_A SPBC2 prophage-derived 21.8 10 0.00034 27.0 -1.6 32 23-54 3-34 (173)
79 1in4_A RUVB, holliday junction 21.6 89 0.003 25.2 4.1 46 18-67 148-194 (334)
80 3qu1_A Peptide deformylase 2; 21.4 72 0.0025 23.9 3.2 36 137-173 128-167 (171)
81 3tlx_A Adenylate kinase 2; str 20.9 13 0.00043 29.0 -1.3 29 22-50 30-58 (243)
82 1a5t_A Delta prime, HOLB; zinc 20.6 1E+02 0.0035 24.8 4.3 42 20-65 138-179 (334)
83 1gvn_B Zeta; postsegregational 20.6 21 0.00073 28.6 0.0 30 22-51 34-65 (287)
84 2opa_A Probable tautomerase YW 20.4 95 0.0032 17.9 3.1 26 157-182 12-37 (61)
85 2qt1_A Nicotinamide riboside k 20.0 21 0.00073 26.5 -0.1 30 16-45 16-45 (207)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1e-44 Score=370.49 Aligned_cols=186 Identities=20% Similarity=0.384 Sum_probs=170.5
Q ss_pred CcccceecCCCCCCeeeecceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHH
Q psy9563 1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIE 79 (192)
Q Consensus 1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~ 79 (192)
||+|||||++ +++|+.++|++||||||||| |||++||+||+|||+++++++|+.++|.+||++++.+++ ++.++
T Consensus 1404 ld~~g~yd~~-~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l----~~~p~ 1478 (3245)
T 3vkg_A 1404 VEKGGFWRTS-DHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALM----KLLPN 1478 (3245)
T ss_dssp HHHSEEEETT-TTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHT----TSCGG
T ss_pred HHcCCeEECC-CCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHH----hhChH
Confidence 4799999975 58999999999999999998 899999999999999999999999999999999999887 35667
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhccc-ccccCChHHHHHHHHHHHHHHHHhhcCCh
Q psy9563 80 VRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTL-STVIDSEKVLMLLWKHEVTRVFSDRFTIM 158 (192)
Q Consensus 80 i~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~-~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~ 158 (192)
++.+++.+++||+++|.++++.|+|+ .++||+||||||+||+|||+++. +....+.+.++|||+|||.|||+|||+++
T Consensus 1479 l~~~~~~lv~ati~ly~~v~~~~lp~-~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~ 1557 (3245)
T 3vkg_A 1479 LRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVET 1557 (3245)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHSCTT-TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCH
Confidence 78889999999999999999999996 89999999999999999999974 44456788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcchhhhhcCCCCCccC
Q psy9563 159 SDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD 192 (192)
Q Consensus 159 ~d~~~f~~~l~~~~~~~f~~~~~~~~~~~~~f~d 192 (192)
+||+||.+++.++++++|+...+..+.++++|||
T Consensus 1558 ~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~ 1591 (3245)
T 3vkg_A 1558 EEKEWTDKKIDEVALKHFPSVNLDALKRPILYSN 1591 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhcccCcchhh
Confidence 9999999999999999998644566678899997
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=5.4e-43 Score=356.20 Aligned_cols=186 Identities=23% Similarity=0.421 Sum_probs=170.5
Q ss_pred CcccceecCCCCCCeeeecceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHH
Q psy9563 1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIE 79 (192)
Q Consensus 1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~ 79 (192)
+|+||||+.+ ..+|+.++|+++|||||||| |||+.|++||+|||++++++.|+.+++..||++++++++ ++.++
T Consensus 1366 le~gg~yd~~-~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l----~~~~~ 1440 (2695)
T 4akg_A 1366 MEKQGFWKTP-ENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF----KLVPE 1440 (2695)
T ss_dssp HHTSSEECTT-TCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHT----TSSGG
T ss_pred HhcCCEEEcC-CCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHh----ccCHH
Confidence 4789999974 57999999999999999997 899999999999999999999999999999999999998 36778
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhccccc-ccCChHHHHHHHHHHHHHHHHhhcCCh
Q psy9563 80 VRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLST-VIDSEKVLMLLWKHEVTRVFSDRFTIM 158 (192)
Q Consensus 80 i~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~-~~~~~~~l~rlw~hE~~Rvf~DRLv~~ 158 (192)
++.+.+.+++||+++|+++++.|+|+ .|+||+||||||+||+|||+.+.++ .+.+...++|||+|||+|||+|||+++
T Consensus 1441 v~~~~~~lv~ati~~y~~v~~~~~~~-~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~ 1519 (2695)
T 4akg_A 1441 FRSYTEPFARASVHLYNECKARYSTG-LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGV 1519 (2695)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHSCTT-TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCc-cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCH
Confidence 88999999999999999999999875 8999999999999999999998654 477899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhcchhh-hhcCCCCCccC
Q psy9563 159 SDKHWFDDEVLNLVEQNLGVKYR-EMAGTDPVFVD 192 (192)
Q Consensus 159 ~d~~~f~~~l~~~~~~~f~~~~~-~~~~~~~~f~d 192 (192)
+||+||.+++.++++++|+.... ....++++|||
T Consensus 1520 ~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~d 1554 (2695)
T 4akg_A 1520 KEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSG 1554 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEES
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhccCCceeee
Confidence 99999999999999999986543 34456789987
No 3
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.87 E-value=0.00011 Score=76.58 Aligned_cols=133 Identities=21% Similarity=0.285 Sum_probs=89.5
Q ss_pred cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHHH
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKST 98 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~i 98 (192)
.+..+++||||..+||..+|.-|.+.|+.+++..|+.+.+..|.-. +. +|.. .+.++..++.+|+.+
T Consensus 746 ~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~-----Gf~~-----a~~la~kiv~~~~l~ 812 (2695)
T 4akg_A 746 PHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IM-----GFED-----SKSLASKIVHFLELL 812 (2695)
T ss_dssp TTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HH-----HCSS-----HHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hc-----CCCc-----hHHHHHHHHHHHHHH
Confidence 3678999999866899999999999999999999998777665421 11 2321 345667778889888
Q ss_pred HhhcCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q psy9563 99 RAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLV 172 (192)
Q Consensus 99 ~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d~~~f~~~l~~~~ 172 (192)
++++. ...||.|.||.+..++...-............+++. ...+.--+++ .+|...|..++.+++
T Consensus 813 ~e~ls---~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~a----l~~~~lpk~~-~~D~~lf~~li~dlF 878 (2695)
T 4akg_A 813 SSKCS---SMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVES----LKRVILPSLG-DTDELVFKDELSKIF 878 (2695)
T ss_dssp HHHSC---CCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHH----HHHHTGGGCC-HHHHHHHHHHHHHHC
T ss_pred HHHhC---cCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHH----HHHhccccCc-hhhHHHHHHHHHHhC
Confidence 88775 468999999999888753221111111122222222 2223444664 789999988776654
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.16 E-value=0.0022 Score=67.77 Aligned_cols=137 Identities=22% Similarity=0.332 Sum_probs=92.7
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHHHH
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTR 99 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~i~ 99 (192)
+..+++||||.-+||.++|.-|.+.|+.+.+..|+.+.+..|- |.+ .||.+ +..|+.-++.+|+..+
T Consensus 707 ~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L~s-----~Gf~~-----a~~La~k~~~~~~l~~ 773 (3245)
T 3vkg_A 707 DMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---LYS-----QGFKT-----AEVLAGKIVPLFKLCQ 773 (3245)
T ss_dssp TCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---HHT-----TTCSC-----HHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH---HHH-----cccch-----HHHHHHHHHHHHHHHH
Confidence 6889999997447999999999999999999999987766553 221 36654 3456777888998888
Q ss_pred hhcCCCCCCcceEeehhhHHHHhh---hhhccccccc----CC----hHHHHHHHHHH---HHHHHHh----hcCChhhH
Q psy9563 100 AQLLPTPAKFHYVFSLRDLSRIWQ---GMVGTLSTVI----DS----EKVLMLLWKHE---VTRVFSD----RFTIMSDK 161 (192)
Q Consensus 100 ~~~~ptp~~~HY~Fnlrdl~r~~~---gl~~~~~~~~----~~----~~~l~rlw~hE---~~Rvf~D----RLv~~~d~ 161 (192)
+++. ...||-|-||-|..|+. ++.+...... ++ ..........| ..|..+| ||+ .+|.
T Consensus 774 e~LS---~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~-~~D~ 849 (3245)
T 3vkg_A 774 EQLS---AQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLV-ADDI 849 (3245)
T ss_dssp HSSC---CCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSC-GGGH
T ss_pred HHhC---CCCCCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHHHHhccCCCc-hhhH
Confidence 8875 46799999999999875 3333332111 11 00111111223 2455555 443 5799
Q ss_pred HHHHHHHHHHHH
Q psy9563 162 HWFDDEVLNLVE 173 (192)
Q Consensus 162 ~~f~~~l~~~~~ 173 (192)
..|..++.+++-
T Consensus 850 plF~~li~DlFP 861 (3245)
T 3vkg_A 850 PLIQSLLLDVFP 861 (3245)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHhCC
Confidence 999988777653
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.48 E-value=0.37 Score=39.48 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=41.3
Q ss_pred ceEEEEEeeCCC-CCCCCCccccccceeE-EEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPG-GGRNDIPSRLKRQFCI-FNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~-~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.++||+||+. .|+..++++|+++|.+ +.+++|+.++...|.......
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 578889999765 4777899999999985 999999999999988776643
No 6
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.99 E-value=2.2 Score=39.13 Aligned_cols=137 Identities=9% Similarity=0.071 Sum_probs=81.4
Q ss_pred ceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhcc-CCCCCHHH-HHHHHhHH--------
Q psy9563 20 DVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNA-KRGFPIEV-RNLVKQLI-------- 88 (192)
Q Consensus 20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~-~~~f~~~i-~~~~~~lv-------- 88 (192)
++.+|+|++++. .+...++++|.|+|..+.++.|+.++...|+..+...+... .-.+.++. ..++....
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~l 394 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccC
Confidence 688999999765 46677889999999999999999999999998877542210 01244332 21111110
Q ss_pred -HHHHHHHHHHHhh--cCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhh
Q psy9563 89 -PLTRLLWKSTRAQ--LLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSD 160 (192)
Q Consensus 89 -~ati~ly~~i~~~--~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d 160 (192)
...+++.+..... +.|. ...+...+..|+.+++..+...+.......+ ..+ ..+..+.+.++++..++
T Consensus 395 p~~~i~lld~a~~~~~~~~~-~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~-~~~--l~~l~~~l~~~v~g~~~ 465 (758)
T 1r6b_X 395 PDKAIDVIDEAGARARLMPV-SKRKKTVNVADIESVVARIARIPEKSVSQSD-RDT--LKNLGDRLKMLVFGQDK 465 (758)
T ss_dssp THHHHHHHHHHHHHHHHSSS-CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSH-HHH--HHHHHHHHTTTSCSCHH
T ss_pred chHHHHHHHHHHHHHhcccc-cccCCccCHHHHHHHHHHhcCCCccccchhH-HHH--HHHHHHHHHhhccCHHH
Confidence 1234444433322 2222 2346678999999999988766544432221 111 12334456666766543
No 7
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.40 E-value=0.33 Score=43.33 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=39.9
Q ss_pred ecceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~ 67 (192)
+.++.+|+|.|++. .+++-|+++|.++.++.|+.++...|....+.
T Consensus 222 ~~~v~iI~ttN~~~----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~ 267 (543)
T 3m6a_A 222 LSKVLFIATANNLA----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLL 267 (543)
T ss_dssp CSSCEEEEECSSTT----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHH
T ss_pred ccceEEEeccCccc----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHH
Confidence 46889999999864 78899999999999999999999999877663
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.04 E-value=0.88 Score=37.51 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=39.8
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||.|.| ..+++.++|+| ..+.++.|+.++...|+..++..
T Consensus 148 ~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 148 DGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp TTEEEEEEESCT----TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCc----ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 578999999987 46889999999 78999999999999999887754
No 9
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.86 E-value=0.45 Score=41.50 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=40.9
Q ss_pred ceEEEEEeeCCCC-CCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~-gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|+|++++.. +...+++.|.|+|.++.++.|+.++...|+..++..
T Consensus 291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 5899999997642 223678999999999999999999999999887654
No 10
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=81.87 E-value=1.7 Score=39.11 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=38.4
Q ss_pred cceEEEEEeeCCCCCCC----------CCccccccce--eEEEecCCCHHHHHHHHHHHHhhhh
Q psy9563 19 IDVQFVAAMAQPGGGRN----------DIPSRLKRQF--CIFNCVLPSDKAIDNIFSVIGEGHY 70 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~----------~i~~Rl~r~f--~~~~~~~ps~~~l~~I~~~il~~~l 70 (192)
.++.++||+||+ .|+. .+++-|+++| ..+..++|+.+ ...|...++..+-
T Consensus 433 ~~~~vIaatNp~-~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~ 494 (595)
T 3f9v_A 433 ARAAVIAAGNPK-FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHS 494 (595)
T ss_dssp CCCEEEEEECCT-TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTC
T ss_pred CceEEEEEcCCc-CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhh
Confidence 478999999987 4555 8999999999 45666777777 7778777776553
No 11
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=81.36 E-value=1.5 Score=35.52 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=36.5
Q ss_pred cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~ 67 (192)
.++.+|+++|.+. .+.+++.+++.++.++.|+.++...|...++.
T Consensus 135 ~~~~iI~~~n~~~----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 135 SNCSIIITANNID----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIR 179 (324)
T ss_dssp GGCEEEEEESSGG----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCcc----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3688999999764 68899999999999999999987666655543
No 12
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=81.27 E-value=1.4 Score=38.06 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=39.6
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||+|.| ..+++.|+|+| .++.++.|+.++...|+..++..
T Consensus 270 ~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 270 DGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp SSCEEEEEESCG----GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCc----cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 579999999987 46889999999 58999999999999999887654
No 13
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.84 E-value=0.66 Score=42.79 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=41.3
Q ss_pred ceEEEEEeeCCCC-CCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~-gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|+|++++.. +...+++.|.|+|.++.++.|+.++...|+..+...
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 5899999997652 334689999999999999999999999999877654
No 14
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.35 E-value=2.1 Score=39.24 Aligned_cols=64 Identities=9% Similarity=0.020 Sum_probs=46.7
Q ss_pred ccceecCCCCCCeeeecceEEEEEeeCCCCC---------------------CCCCccccccce-eEEEecCCCHHHHHH
Q psy9563 3 MKGFYSLEKPGEFTTLIDVQFVAAMAQPGGG---------------------RNDIPSRLKRQF-CIFNCVLPSDKAIDN 60 (192)
Q Consensus 3 ~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~~g---------------------r~~i~~Rl~r~f-~~~~~~~ps~~~l~~ 60 (192)
.|.+.+. ........++.+|+|+|++... +..+++.|+++| .++.+++|+.+++..
T Consensus 583 ~~~~~~~--~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~ 660 (758)
T 1r6b_X 583 NGTLTDN--NGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQ 660 (758)
T ss_dssp HSEEEET--TTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHH
T ss_pred CcEEEcC--CCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHH
Confidence 3445543 2345566789999999975411 015678899999 789999999999999
Q ss_pred HHHHHHhh
Q psy9563 61 IFSVIGEG 68 (192)
Q Consensus 61 I~~~il~~ 68 (192)
|....+..
T Consensus 661 i~~~~l~~ 668 (758)
T 1r6b_X 661 VVDKFIVE 668 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887764
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=79.30 E-value=1.7 Score=36.23 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=39.1
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||+|.|. .+++.++|.| ..+.++.|+.++...|+..++..
T Consensus 186 ~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 186 QGVLVLGATNIPW----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp CCEEEEEEESCGG----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCeEEEeecCCcc----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 4789999999773 6788899888 78999999999999999887754
No 16
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.21 E-value=1.6 Score=35.00 Aligned_cols=90 Identities=9% Similarity=-0.055 Sum_probs=56.1
Q ss_pred ceEEEEEeeCCC-CCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHH
Q psy9563 20 DVQFVAAMAQPG-GGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKS 97 (192)
Q Consensus 20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~ 97 (192)
++.+|++.+++. .....+++.|.++| .++.+++|+.+++..|...++...- ..+.++... ...+....
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~---~~~~~~~~~-------~l~~~~~~ 238 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN---YQMTPEAET-------ALRAYIGL 238 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT---CEECHHHHH-------HHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC---CCCCHHHHH-------HHHHHHHH
Confidence 678888887542 11112458888888 8999999999999999988886531 134443321 11111111
Q ss_pred HHhhcCCCCCCcceEeehhhHHHHhhhhhc
Q psy9563 98 TRAQLLPTPAKFHYVFSLRDLSRIWQGMVG 127 (192)
Q Consensus 98 i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~ 127 (192)
. ...++.-|.|++.++++.++.
T Consensus 239 ~--------~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 239 R--------RNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp H--------TTSSSCCHHHHHHHHHHHHHH
T ss_pred h--------ccCCCCCcHHHHHHHHHHHHH
Confidence 1 122344578998888876663
No 17
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.03 E-value=3.8 Score=33.09 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=36.7
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||.|.|. .+++.++| .| ..+.++.|+.++...|+..+++.
T Consensus 153 ~~v~vi~atn~~~----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 153 KNVFIIGATNRPD----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp SSEEEEEEESCGG----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCcc----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 3689999999763 57777777 56 58999999999998888777643
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=74.60 E-value=3.2 Score=32.75 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=37.2
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|+|+|.| ..+++.++| .| .++.++.|+.++...|+...+..
T Consensus 155 ~~~~vI~ttn~~----~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 155 GDVKIIGATNRP----DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SSEEEEEECSCG----GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCc----hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 368899999976 357788887 67 48999999999999999877653
No 19
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=74.29 E-value=2.9 Score=33.18 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=36.5
Q ss_pred ecceEEEEEeeCCCCCCCCCcccccccee-EEEecCCCHHHHHHHHH
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKRQFC-IFNCVLPSDKAIDNIFS 63 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~-~~~~~~ps~~~l~~I~~ 63 (192)
-.++.+|++.++.......++++|.++|. ++.+++|+.+++..|..
T Consensus 166 ~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 166 TDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp CTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 34788999876543344578899999995 59999999999998887
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.57 E-value=3 Score=34.00 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=38.7
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||.|.|. .+++.+.|.| ..+.++.|+.++...|+..++..
T Consensus 153 ~~v~vi~atn~~~----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 153 QGVLVLGATNIPW----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp CCEEEEEEESCGG----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CceEEEEecCChh----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 4688999999763 5888888888 68899999999999999887754
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.96 E-value=5.4 Score=30.81 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=36.5
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|+|.|.|. .+++.+.| .| ..+.++.|+.++...|+..++..
T Consensus 144 ~~~~vi~~tn~~~----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 144 DHVIVLASTNRAD----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp CCEEEEEEESCGG----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChh----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 3678999988763 56677777 67 68899999999999988887764
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=72.83 E-value=0.56 Score=34.11 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=33.1
Q ss_pred ceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHH
Q psy9563 20 DVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNI 61 (192)
Q Consensus 20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I 61 (192)
++.+|++++++. .....++++|.++|..+.++.|+.++...|
T Consensus 151 ~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 151 ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 678899988654 223357899999999999999999887655
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.49 E-value=3.5 Score=34.58 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=38.3
Q ss_pred cceEEEEEeeCCCCCCCCCcccccccee-EEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFC-IFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~-~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||+|+|. .+++.+.|+|. ++.++.|+.++...|...++..
T Consensus 251 ~~v~vI~atn~~~----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 251 DRVLVMGATNRPQ----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp -CEEEEEEESCGG----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCch----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 3688999999763 77889999994 8999999999999998877754
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=71.82 E-value=1.1 Score=41.92 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=40.3
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
++.+|+|++++...+..+++.|.|+|.++.++.|+.++...|+..++..+
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKY 348 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhh
Confidence 57899998865432245789999999999999999999999998777643
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=66.99 E-value=5.5 Score=33.06 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=38.2
Q ss_pred cceEEEEEeeCCCCCCCCCcccccccee-EEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFC-IFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~-~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||+|.|. .+++.+.|.|. .+.++.|+.++...|...++..
T Consensus 220 ~~v~vI~atn~~~----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 220 DRILVVGATNRPQ----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp CCEEEEEEESCGG----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred CCEEEEEecCChh----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 4688999998763 67888888886 8899999999999998887754
No 26
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=66.90 E-value=7.1 Score=28.66 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=36.6
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|++++.+ ..+.+++.+++..+.+++|+.+++..++...+..
T Consensus 132 ~~~~i~~~~~~----~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 132 SCRFILSCNYV----SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp TEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCh----hhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH
Confidence 57788888755 3567889999999999999999999888877653
No 27
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=66.49 E-value=12 Score=28.95 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=33.9
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
.++.+|+|.|.|. .+++++.| +| ..+.++.|+.++-..|...+++
T Consensus 149 ~~~~vI~~tn~~~----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 149 EGIIVIAATNRPD----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp SCEEEEEEESCTT----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCch----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 4688999999873 56777776 44 5788999999888877766554
No 28
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.98 E-value=12 Score=32.43 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=37.8
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
.+|.+|||.|-|. .|++-|+| .| ..+.++.|+.++-..|+..+++..
T Consensus 319 ~~ViVIaaTNrp~----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (434)
T 4b4t_M 319 DRVKVLAATNRVD----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM 368 (434)
T ss_dssp CSSEEEEECSSCC----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCch----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 4688999999774 67777777 56 578999999999999998777643
No 29
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=63.73 E-value=5.8 Score=31.56 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=41.4
Q ss_pred CeeeecceEEEEEeeCCCC------C----------------CCCCccccccce-eEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 14 EFTTLIDVQFVAAMAQPGG------G----------------RNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 14 ~~~~i~~i~~vaa~~p~~~------g----------------r~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
.-..+.++.+|+|+|++.. | ...+++.|.++| .++.+++|+.+++..|...++...
T Consensus 154 ~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 154 RTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp CEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4455668889999997310 0 224677888888 688888999999999998877653
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=63.63 E-value=6.9 Score=31.67 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=37.3
Q ss_pred ceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|+|.|.++ .+++.|.+.| .++.++.|+.+++..|+......
T Consensus 154 ~~~~i~atn~~~----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 154 KFTLIGATTRAG----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp CCEEEEEESCGG----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcc----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 588999999753 3678888888 89999999999999988877653
No 31
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.44 E-value=9.8 Score=32.72 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=38.0
Q ss_pred ecceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
-.+|.+|||.|-|. .|++-|+| .| ..+.++.|+.++-..|+..+++.
T Consensus 285 ~~~V~vIaATNrpd----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 285 SKNIKIIMATNRLD----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp CCCEEEEEEESCSS----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCeEEEeccCChh----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 35789999999773 67888887 55 68999999999999999776654
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.74 E-value=4.7 Score=37.04 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=39.3
Q ss_pred eeecceEEEEEeeCCCCC--------CCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 16 TTLIDVQFVAAMAQPGGG--------RNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 16 ~~i~~i~~vaa~~p~~~g--------r~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
....|+.+|+|.|.+... +..+.|.|+++| .++.+++|+.+++..|....+..
T Consensus 616 ~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 616 VDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp CBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 345689999999965432 122678888888 79999999999999999887754
No 33
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=59.81 E-value=12 Score=30.05 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=33.3
Q ss_pred cceEEEEEeeCCCCCCCCCccccccceeE-EEecCCC-HHHHHHHHHHHH
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCI-FNCVLPS-DKAIDNIFSVIG 66 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~-~~~~~ps-~~~l~~I~~~il 66 (192)
.++.++||+||.. ..+++.|+++|.+ +.+++|+ .+....|....+
T Consensus 186 ~~~~li~~~n~~~---~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 186 ARFVLVGSGNPEE---GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp CCEEEEEEECSCS---CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred CceEEEEEeCCCC---CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 4899999999743 2588999999986 9999995 444446665543
No 34
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=59.55 E-value=30 Score=28.02 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=39.7
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhhhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEGHY 70 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~~l 70 (192)
.++.+|++.+.+. -...+.+++.+.| ..+.+++++.+++..|+...+...+
T Consensus 163 ~~~~iI~~t~~~~-~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (384)
T 2qby_B 163 ANISVIMISNDIN-VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL 214 (384)
T ss_dssp SCEEEEEECSSTT-TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS
T ss_pred cceEEEEEECCCc-hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc
Confidence 6789999988653 2245678887776 5899999999999999998886433
No 35
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=58.05 E-value=17 Score=29.37 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=38.2
Q ss_pred ceEEEEEeeCCCCCCCCCccccccce--eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQF--CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f--~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|++.+.+. -...+.+++.+.| ..+.+++++.+++..|+...+..
T Consensus 167 ~~~~I~~t~~~~-~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 167 WVSLVGITNSLG-FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp -CEEEEECSCST-TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCc-hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 678888888653 2236788898888 78999999999999999988764
No 36
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.38 E-value=17 Score=31.65 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=37.1
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.+|.+|||.|-|. .|++-|+| .| ..+.++.|+.++-..|+..+++.
T Consensus 320 ~~ViVIaATNrpd----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 320 GDVKVIMATNKIE----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp SSEEEEEEESCST----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCChh----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 5788999999774 67888887 55 57899999999999999877654
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.20 E-value=19 Score=28.67 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=35.4
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
.++.+|+|.+.++ .+.+.|.+.| .++.++.|+.+++..+....+.
T Consensus 137 ~~~~~i~~t~~~~----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 137 PRFTLIGATTRPG----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp CCCEEEEEESCCS----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcc----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH
Confidence 4788999998764 3456677777 5899999999999888877664
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=55.98 E-value=9.2 Score=29.80 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=50.9
Q ss_pred ecceEEEEEeeCCCC---CCCCCccccccceeEEEecCCCH----HHHHHHHHHHHhhhhccC-----CCCCHHHHHHHH
Q psy9563 18 LIDVQFVAAMAQPGG---GRNDIPSRLKRQFCIFNCVLPSD----KAIDNIFSVIGEGHYNAK-----RGFPIEVRNLVK 85 (192)
Q Consensus 18 i~~i~~vaa~~p~~~---gr~~i~~Rl~r~f~~~~~~~ps~----~~l~~I~~~il~~~l~~~-----~~f~~~i~~~~~ 85 (192)
-.++.+|+|+|++-. ....+.++|.++|.++.+..|.. +++..+...+++..-... ..+.++.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a----- 213 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA----- 213 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH-----
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH-----
Confidence 457899999997521 12246788888887655555543 566666665554322100 0222221
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhc
Q psy9563 86 QLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVG 127 (192)
Q Consensus 86 ~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~ 127 (192)
++... ..+|-.|+|+|.++++.++.
T Consensus 214 ------~~~L~-----------~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 214 ------RETLL-----------NYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp ------HHHHH-----------HSCCTTHHHHHHHHHHHHHH
T ss_pred ------HHHHH-----------hCCCCCCHHHHHHHHHHHHH
Confidence 11111 13556799999999987764
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=55.19 E-value=12 Score=29.48 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=36.6
Q ss_pred cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+++|.|.|. .+++.+.|.| ..+.++.|+.++...|...++..
T Consensus 158 ~~v~vi~~tn~~~----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~ 204 (297)
T 3b9p_A 158 DRIVVLAATNRPQ----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204 (297)
T ss_dssp -CEEEEEEESCGG----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG
T ss_pred CcEEEEeecCChh----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 3578999988763 6788888888 68999999999998888877654
No 40
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.21 E-value=21 Score=30.83 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred ecceEEEEEeeCCCCCCCCCccccccc--e-eEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKRQ--F-CIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r~--f-~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
..++.+|||.|-|. .|++-|+|. | ..+.++.|+.++-..|+..++...
T Consensus 318 ~~~vivI~ATNrp~----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 318 LGQTKIIMATNRPD----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp TTSSEEEEEESSTT----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEecCCch----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 35688999999774 678888875 4 589999999999999998777543
No 41
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.96 E-value=15 Score=32.28 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=37.3
Q ss_pred ecceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
-.+|.+|||.|-|. .|++-|+| +| ..+.++.|+.++-..|+..+++.
T Consensus 346 ~~~ViVIaATNrpd----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 346 RGNIKVMFATNRPN----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp TTTEEEEEECSCTT----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCcc----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 34788999998764 67777776 55 68999999999999999876654
No 42
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.44 E-value=19 Score=28.28 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=36.7
Q ss_pred cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~ 67 (192)
.++.+|++++.+ ..+.+.+.+++.++.+++|+.+++..+...++.
T Consensus 131 ~~~~~i~~~~~~----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 131 KSCRFILSCNYV----SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp SSEEEEEEESCG----GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCh----hhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 467888888754 367788889999999999999999988877665
No 43
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=49.36 E-value=22 Score=28.44 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=42.9
Q ss_pred ecceEEEEEeeCCCCCCCCCcccccc--ceeE-EEecCCCHHHHHHHHHHHHhhhhccCCCCC-HHHHHHHHhHHHHHHH
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKR--QFCI-FNCVLPSDKAIDNIFSVIGEGHYNAKRGFP-IEVRNLVKQLIPLTRL 93 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r--~f~~-~~~~~ps~~~l~~I~~~il~~~l~~~~~f~-~~i~~~~~~lv~ati~ 93 (192)
..++.+|+|.|.+. .+++.|+| .|.. +. .|+.++...|+..++... +.. +.+..+...++.+.++
T Consensus 153 ~~~v~vI~ttN~~~----~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~-----~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 153 NARVPIIVTGNDFS----TLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD-----NVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CCCCCEEEECSSCC----C--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG-----CCCHHHHHHHHHHSCSCCHH
T ss_pred CCCcEEEEecCCcc----cCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC-----CCCHHHHHHHhCCCCcccHH
Confidence 45799999999763 67888886 4543 33 589999999988766532 232 2344455555555555
Q ss_pred HHHHHH
Q psy9563 94 LWKSTR 99 (192)
Q Consensus 94 ly~~i~ 99 (192)
++..++
T Consensus 222 ~~~~l~ 227 (293)
T 3t15_A 222 FFGALR 227 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 44
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=48.98 E-value=20 Score=29.16 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=35.6
Q ss_pred eEEEEEeeCCCCCCCC-CccccccceeEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 21 VQFVAAMAQPGGGRND-IPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 21 i~~vaa~~p~~~gr~~-i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
+-+|--+.-|+.||.- =|+||.+++..=.+-.||.+.++.+|-.-|+..
T Consensus 62 ~AYVqPsRRP~DGRYGeNPNRLq~y~QfQVilKPsP~niQeLYL~SL~al 111 (298)
T 1j5w_A 62 VAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYL 111 (298)
T ss_dssp EEEEEEEECCC-----CCTTCCSEEEEEEEEEESCCSSHHHHHHHHHHHT
T ss_pred eeeeccCCCCCCCCcCCCchhhhhheeeEEEECCCCccHHHHHHHHHHHh
Confidence 5677777778888774 479999999888888899999999997776654
No 45
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*
Probab=48.60 E-value=5.7 Score=27.67 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.6
Q ss_pred cceEeehhhHHHHhhhhhc
Q psy9563 109 FHYVFSLRDLSRIWQGMVG 127 (192)
Q Consensus 109 ~HY~Fnlrdl~r~~~gl~~ 127 (192)
.|| |+.||+.|+++|+.
T Consensus 70 VHy--NPSDLs~WvesMLs 86 (110)
T 2zsh_B 70 VHY--NPAELYTWLDSMLT 86 (110)
T ss_dssp TTS--CTTBHHHHHHHHHH
T ss_pred hcC--ChHHHHHHHHHHHH
Confidence 455 89999999999985
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.18 E-value=20 Score=26.72 Aligned_cols=47 Identities=4% Similarity=-0.068 Sum_probs=34.6
Q ss_pred EEEEEeeCCCCCCCCCccccccce---eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 22 QFVAAMAQPGGGRNDIPSRLKRQF---CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 22 ~~vaa~~p~~~gr~~i~~Rl~r~f---~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.+|.+++.+......+.+++.+.+ .++.++.|+.+++..|....+..
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 366666643322234458899888 89999999999999998887753
No 47
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.96 E-value=5.4 Score=29.36 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.5
Q ss_pred EEEEeeCCCCCCCCCccccccce-----eEEEecCCCHHHHHHHHHHHH
Q psy9563 23 FVAAMAQPGGGRNDIPSRLKRQF-----CIFNCVLPSDKAIDNIFSVIG 66 (192)
Q Consensus 23 ~vaa~~p~~~gr~~i~~Rl~r~f-----~~~~~~~ps~~~l~~I~~~il 66 (192)
+|+-.+++|.|+.++..+|..++ .++....|....+......++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~ 50 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHH
Confidence 57778899999999999998864 778888888766555444444
No 48
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=47.41 E-value=21 Score=29.22 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=38.5
Q ss_pred eEEEEEeeCCCCCCCCC-ccccccceeEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 21 VQFVAAMAQPGGGRNDI-PSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 21 i~~vaa~~p~~~gr~~i-~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
+-+|--+.-|+.||.-- |+||.+++..=.+-.||.+.++.+|-.-|+..
T Consensus 74 ~AYVqPsRRP~DGRYGeNPNRLq~yyQfQVilKPsP~niQeLYL~SL~al 123 (311)
T 3rf1_A 74 AAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENL 123 (311)
T ss_dssp EEEEEEEECGGGCCTTCCSSCCSEEEEEEEEEESCCTTHHHHHHHHHHHT
T ss_pred eeeeccCCCCCCCCcCCCchhhhhheeeEEEEcCCCccHHHHHHHHHHHh
Confidence 56666666688787744 79999999887788899999999997766653
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=46.47 E-value=24 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=35.4
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|++++.+ ..+.+.+.+.+..+.+++++.+++..++...+..
T Consensus 156 ~~~~i~~t~~~----~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 156 HVKFLLATTDP----QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp TEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCh----HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 57788877643 2566778888899999999999999988877653
No 50
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=45.81 E-value=3 Score=32.62 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=28.6
Q ss_pred ecceEEEEEeeCCCCCCCCCccccccceeEEEec
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCV 51 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~ 51 (192)
+..-.+|.-++|||+|+.+.+.+|..++.+.++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4455677778999999999999999999888874
No 51
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=45.68 E-value=2.7 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.6
Q ss_pred EEEeeCCCCCCCCCccccccceeEEEec
Q psy9563 24 VAAMAQPGGGRNDIPSRLKRQFCIFNCV 51 (192)
Q Consensus 24 vaa~~p~~~gr~~i~~Rl~r~f~~~~~~ 51 (192)
|.=++|||+|+.+.+.+|..++.+.++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 4557999999999999999999988874
No 52
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=45.29 E-value=11 Score=29.24 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=33.7
Q ss_pred ceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
++.+|+|.|.|. .+++.++| .| ..+.++.|+.++...|...+++
T Consensus 151 ~v~vi~ttn~~~----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 151 PVIVLAATNRPE----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp CCEEEECBSCCT----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CEEEEEecCCch----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 378999988773 46777776 55 4689999999998888876654
No 53
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.42 E-value=25 Score=27.68 Aligned_cols=46 Identities=24% Similarity=0.157 Sum_probs=37.1
Q ss_pred cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|.+++.+ ..+.+.+.+++.++.+++|+.+++..+...++..
T Consensus 136 ~~~~~il~~~~~----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 136 NSTRFAFACNQS----NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TTEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCh----hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHH
Confidence 357788887754 3677888899999999999999999988877653
No 54
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.08 E-value=26 Score=30.12 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=38.2
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.+.+|+|.+.+- ...+.+.|.+.+.++.+..|+.+++..|....+..
T Consensus 134 ~v~lI~att~n~--~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 134 TITFIGATTENP--SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp SCEEEEEESSCG--GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCc--ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 467888775322 24688999999999999999999999999888765
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=40.59 E-value=16 Score=30.23 Aligned_cols=50 Identities=4% Similarity=-0.075 Sum_probs=37.4
Q ss_pred ceEEEEEeeCCCCCCCCCccccccce--eEEEecCCCHHHHHHHHHHHHhhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQF--CIFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f--~~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
++.+|+..|...--...+++|+.+.+ .++.+++++.+++..|...-++..
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 57788887754211224567777777 679999999999999999988764
No 56
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=40.40 E-value=10 Score=27.61 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=28.6
Q ss_pred EEEEeeCCCCCCCCCcccccc-----ceeEEEecCCCHHHHH
Q psy9563 23 FVAAMAQPGGGRNDIPSRLKR-----QFCIFNCVLPSDKAID 59 (192)
Q Consensus 23 ~vaa~~p~~~gr~~i~~Rl~r-----~f~~~~~~~ps~~~l~ 59 (192)
+|+-+++||.|+.++...|.. .+.++..+.|....+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~ 43 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVG 43 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchH
Confidence 466778899999999988877 4677888888755443
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=40.39 E-value=46 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=31.8
Q ss_pred eEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 21 VQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 21 i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
+.++|+.+.|. .+++.++| +| ..+.++.|+.++...|+....+
T Consensus 155 ~i~~a~t~~p~----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 155 IVVMAATNRPD----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp EEEEEEESCGG----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred EEEEEccCCch----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 45667777663 47788886 44 5899999999998888876543
No 58
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=40.18 E-value=33 Score=27.01 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=35.8
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~ 67 (192)
++.+|.+++.+ ..+.+.+.+.+.++.+++++.+++..+...++.
T Consensus 140 ~~~~i~~~~~~----~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 140 NVRFILSCNYS----SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp TEEEEEEESCG----GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCc----cccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 57788887754 357788888999999999999999988877764
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.94 E-value=42 Score=28.87 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=36.1
Q ss_pred ecceEEEEEeeCCCCCCCCCcccccc--ce-eEEEec-CCCHHHHHHHHHHHHhh
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCV-LPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~-~ps~~~l~~I~~~il~~ 68 (192)
-.+|.+|||.|-|. .|++-|+| .| ..+.++ .|+.++-..|+..+++.
T Consensus 309 ~~~v~vI~aTN~~~----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~ 359 (428)
T 4b4t_K 309 STNVKVIMATNRAD----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK 359 (428)
T ss_dssp SCSEEEEEEESCSS----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEecCChh----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34688999999763 67888887 55 367885 78999988898877754
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=38.57 E-value=37 Score=29.61 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=36.2
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++.+|||.|.|. .+++.+.| .| ..+.++.|+.++...|+...+..
T Consensus 339 ~~v~vIaaTn~~~----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 339 AHVIVMAATNRPN----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp SCEEEEEEESCGG----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred CceEEEEecCCcc----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 3789999999773 46777777 55 37999999999999988776653
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=38.05 E-value=40 Score=29.40 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=33.8
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--cee-EEEecCCCHHHHHHHHHHHHh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QFC-IFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f~-~~~~~~ps~~~l~~I~~~il~ 67 (192)
.++.+|||.|.|. .+++.++| .|. .+.++.|+.++-..|+...++
T Consensus 153 ~~viVIaaTn~~~----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 153 EGIIVMAATNRPD----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp GTEEEEEEESCGG----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEecCChh----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence 4789999999763 46666665 443 889999999888888766554
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.10 E-value=93 Score=24.78 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=36.3
Q ss_pred ceEEEEEeeCCCCCCCCCccccccce--eEEEecCCCHHHHHHHHHHHHhhhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQF--CIFNCVLPSDKAIDNIFSVIGEGHY 70 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f--~~~~~~~ps~~~l~~I~~~il~~~l 70 (192)
++.+|++.+.+.. ...+.+++.+.| ..+.+++++.+++..|+...+...+
T Consensus 163 ~~~~I~~~~~~~~-~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (386)
T 2qby_A 163 KISFIGITNDVKF-VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF 214 (386)
T ss_dssp -EEEEEEESCGGG-GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB
T ss_pred eEEEEEEECCCCh-HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc
Confidence 6788888875431 124567777777 6899999999999999988776433
No 63
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=32.69 E-value=2e+02 Score=25.00 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=32.6
Q ss_pred ceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
.+.++|+.+.|. .+++.++| .| ..+.++.|+.++-..|+...++
T Consensus 169 ~viviAatn~p~----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 169 AIVVMAATNRPD----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCEEEECCSCGG----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred cEEEEEecCChh----hcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 467788888763 37777776 33 5899999999988888865543
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=32.26 E-value=42 Score=26.77 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.1
Q ss_pred eEEEEEeeCCCCCCCCCccccccce---eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 21 VQFVAAMAQPGGGRNDIPSRLKRQF---CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 21 i~~vaa~~p~~~gr~~i~~Rl~r~f---~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++|.+.+.+...-..+.++|.+.| .++.+++ +.++...|....+..
T Consensus 132 ~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 132 KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 3455555433222235889999999 7899988 999999888877653
No 65
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=31.97 E-value=92 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=29.8
Q ss_pred CCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 35 NDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 35 ~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
..+++.|.+.|.++.+++|+.+++..|....+..
T Consensus 241 ~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 241 HGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp TTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999877654
No 66
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.48 E-value=43 Score=26.69 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=35.6
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~ 67 (192)
++.+|.+++.+. .+.+++.+++..+.+++|+.+++..+...++.
T Consensus 163 ~~~~il~~~~~~----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 163 VTRFCLICNYVT----RIIDPLASQCSKFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp TEEEEEEESCGG----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEeCchh----hCcchhhccCceEEeCCCCHHHHHHHHHHHHH
Confidence 456777777553 57889999999999999999999988887764
No 67
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.28 E-value=71 Score=25.54 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=36.4
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|.+++.+. .+.+.+.+++..+.+++|+.+++..+...+...
T Consensus 164 ~~~~Il~t~~~~----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 164 NIRLIMVCDSMS----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp TEEEEEEESCSC----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHH----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH
Confidence 577888877543 467888889999999999999999988877653
No 68
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=29.85 E-value=14 Score=27.31 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=30.0
Q ss_pred EEEEEeeCCCCCCCCCccccccce----eEEEecCCCHHHHHHHHH
Q psy9563 22 QFVAAMAQPGGGRNDIPSRLKRQF----CIFNCVLPSDKAIDNIFS 63 (192)
Q Consensus 22 ~~vaa~~p~~~gr~~i~~Rl~r~f----~~~~~~~ps~~~l~~I~~ 63 (192)
.+|+-+++||.|+.++..+|..++ .++....|..+.+..++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~ 50 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK 50 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh
Confidence 367778899999999998887764 255666776555655553
No 69
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=27.15 E-value=35 Score=29.12 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=34.4
Q ss_pred eEEEEEeeCCCCCCCCCccccccce---eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 21 VQFVAAMAQPGGGRNDIPSRLKRQF---CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 21 i~~vaa~~p~~~gr~~i~~Rl~r~f---~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.++|.+++.|...-..+.+||.+.| .++.++.|+.++...|....+..
T Consensus 228 ~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 228 KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 4555555533222224789999999 68999999999999988877653
No 70
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=27.05 E-value=65 Score=25.39 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=33.0
Q ss_pred ceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
.+-++|++|.|. .|++-++| .| ..+.++.|+.++-..|+..+++
T Consensus 146 ~~i~ia~tn~p~----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPD----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGG----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChh----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 355667777663 56777775 45 5789999999999999988774
No 71
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.17 E-value=10 Score=27.45 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=23.9
Q ss_pred EEEEEeeCCCCCCCCCcccccccee-----EEEe
Q psy9563 22 QFVAAMAQPGGGRNDIPSRLKRQFC-----IFNC 50 (192)
Q Consensus 22 ~~vaa~~p~~~gr~~i~~Rl~r~f~-----~~~~ 50 (192)
.+|.-+++||.|+.++..+|.+++. +.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 3577788999999999999988876 6666
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=26.11 E-value=64 Score=25.97 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=37.4
Q ss_pred cceEEEEEeeCCCCCCCCCcccccccee--EEEecCCCHHHHHHHHHHHHhhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKRQFC--IFNCVLPSDKAIDNIFSVIGEGH 69 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~--~~~~~~ps~~~l~~I~~~il~~~ 69 (192)
.++.+|++++.+.- ...+.+++.+.|. .+.+++++.+++..|+...+...
T Consensus 158 ~~~~iI~~~~~~~~-~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~ 209 (389)
T 1fnn_A 158 FRIALVIVGHNDAV-LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG 209 (389)
T ss_dssp CCEEEEEEESSTHH-HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCchH-HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh
Confidence 37888988875521 1236777777776 69999999999999998887653
No 73
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=26.01 E-value=22 Score=27.47 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=36.3
Q ss_pred eeeecceEEEEEeeCCCCCCCCCccccccce----eEEEecCCCHHHHHHHHHHH
Q psy9563 15 FTTLIDVQFVAAMAQPGGGRNDIPSRLKRQF----CIFNCVLPSDKAIDNIFSVI 65 (192)
Q Consensus 15 ~~~i~~i~~vaa~~p~~~gr~~i~~Rl~r~f----~~~~~~~ps~~~l~~I~~~i 65 (192)
+..+..=.+|+-.++||.|+.++..+|...+ .++....|....+...+..+
T Consensus 20 ~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~ 74 (229)
T 4eaq_A 20 FQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKI 74 (229)
T ss_dssp CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHH
T ss_pred EeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHH
Confidence 3344455688888999999999988887764 57777888776654444443
No 74
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=23.69 E-value=14 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=22.5
Q ss_pred EEEEeeCCCCCCCCCcccccc-ceeEEEec
Q psy9563 23 FVAAMAQPGGGRNDIPSRLKR-QFCIFNCV 51 (192)
Q Consensus 23 ~vaa~~p~~~gr~~i~~Rl~r-~f~~~~~~ 51 (192)
+|.-+++||.|+.++..+|.+ ......++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 567789999999999999987 45555553
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=23.21 E-value=1.1e+02 Score=23.64 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=32.0
Q ss_pred eEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHh
Q psy9563 21 VQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 21 i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~ 67 (192)
+.++|+++.|. .+++.++| .| ..+.++.|+.++...|....++
T Consensus 179 ~i~~a~t~~p~----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 179 IVVMAATNRPD----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp EEEEEEESCTT----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred EEEEEecCCch----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 56677777663 47888776 34 5899999999998888876553
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.48 E-value=96 Score=24.80 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=35.2
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
++.+|.+.+.+ ..+.+.+.+.+..+.++.|+.+++..+...++..
T Consensus 149 ~~~~Il~~~~~----~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 149 HVKFLLATTDP----QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp SEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCh----HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH
Confidence 56777777643 2567778888899999999999999888877643
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=21.87 E-value=89 Score=29.21 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=35.8
Q ss_pred cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563 19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG 68 (192)
Q Consensus 19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~ 68 (192)
.+|-+|||.|-|. .|++.|.| .| ..+.++.|+.+.=..|+..+++.
T Consensus 339 ~~V~VIaaTN~~d----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 339 AHVIVMAATNRPN----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp GCEEEEEECSSTT----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred CCEEEEEecCChh----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC
Confidence 3688999998763 67777777 45 57999999999988888876644
No 78
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.82 E-value=10 Score=27.05 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=24.5
Q ss_pred EEEEeeCCCCCCCCCccccccceeEEEecCCC
Q psy9563 23 FVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPS 54 (192)
Q Consensus 23 ~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps 54 (192)
+|+-+++||.|+.++..+|...+....++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 56778999999999999998876655555443
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=21.65 E-value=89 Score=25.20 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=36.0
Q ss_pred ecceEEEEEeeCCCCCCCCCcccccccee-EEEecCCCHHHHHHHHHHHHh
Q psy9563 18 LIDVQFVAAMAQPGGGRNDIPSRLKRQFC-IFNCVLPSDKAIDNIFSVIGE 67 (192)
Q Consensus 18 i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~-~~~~~~ps~~~l~~I~~~il~ 67 (192)
+..+.++++.+.|+ .+|+.+.+.|. ++.+++++.+++..|.....+
T Consensus 148 l~~~~li~at~~~~----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 148 IQPFTLVGATTRSG----LLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -CCCEEEEEESCGG----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcc----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHH
Confidence 44678888777653 68888888886 578999999999999987754
No 80
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=21.35 E-value=72 Score=23.86 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHH----HHHhhcCChhhHHHHHHHHHHHHH
Q psy9563 137 KVLMLLWKHEVTR----VFSDRFTIMSDKHWFDDEVLNLVE 173 (192)
Q Consensus 137 ~~l~rlw~hE~~R----vf~DRLv~~~d~~~f~~~l~~~~~ 173 (192)
.-+.++..||.-. +|-|||. ...|..+.+-+....+
T Consensus 128 G~~Ar~iQHEiDHL~GiLfiDrl~-~~~r~~~~~~~~k~~~ 167 (171)
T 3qu1_A 128 DFLAIVMQHEIDHLSGNLFIDYLS-PLKQQMAMKKVKKHVK 167 (171)
T ss_dssp STHHHHHHHHHHHHTTCCGGGGSC-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhHHHHhhCCEehhhhCC-HHHHHHHHHHHHHHHh
Confidence 3478999999955 6889994 5667777666655443
No 81
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=20.91 E-value=13 Score=28.99 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=23.8
Q ss_pred EEEEEeeCCCCCCCCCccccccceeEEEe
Q psy9563 22 QFVAAMAQPGGGRNDIPSRLKRQFCIFNC 50 (192)
Q Consensus 22 ~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~ 50 (192)
..|+-++|||.|+.+++.+|...+.+.++
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46777899999999999999887766555
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.58 E-value=1e+02 Score=24.81 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=33.7
Q ss_pred ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHH
Q psy9563 20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVI 65 (192)
Q Consensus 20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~i 65 (192)
++.||.+++.| ..+.+.+.+.+.++.++.|+.+++..+....
T Consensus 138 ~~~~Il~t~~~----~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 138 ETWFFLATREP----ERLLATLRSRCRLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp TEEEEEEESCG----GGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CeEEEEEeCCh----HhCcHHHhhcceeeeCCCCCHHHHHHHHHHh
Confidence 57777777644 4688999999999999999999988776554
No 83
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=20.55 E-value=21 Score=28.58 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.4
Q ss_pred EEEEEeeCCCCCCCCCccccccce--eEEEec
Q psy9563 22 QFVAAMAQPGGGRNDIPSRLKRQF--CIFNCV 51 (192)
Q Consensus 22 ~~vaa~~p~~~gr~~i~~Rl~r~f--~~~~~~ 51 (192)
.++.-++|||+|+.++..+|...+ ..+.++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 466778999999999999998766 455553
No 84
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=20.36 E-value=95 Score=17.89 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred ChhhHHHHHHHHHHHHHhhhcchhhh
Q psy9563 157 IMSDKHWFDDEVLNLVEQNLGVKYRE 182 (192)
Q Consensus 157 ~~~d~~~f~~~l~~~~~~~f~~~~~~ 182 (192)
++++++.+.+.+.+.+.++++...++
T Consensus 12 s~eqk~~l~~~i~~~l~~~lg~~~~~ 37 (61)
T 2opa_A 12 TDEQKRNLVEKVTEAVKETTGASEEK 37 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 78899999999999999999986654
No 85
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=20.00 E-value=21 Score=26.46 Aligned_cols=30 Identities=7% Similarity=0.209 Sum_probs=24.8
Q ss_pred eeecceEEEEEeeCCCCCCCCCccccccce
Q psy9563 16 TTLIDVQFVAAMAQPGGGRNDIPSRLKRQF 45 (192)
Q Consensus 16 ~~i~~i~~vaa~~p~~~gr~~i~~Rl~r~f 45 (192)
..+..-.+++-++++|+|+.++...|.+.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345666789999999999999999988865
Done!