RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9563
(192 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 198 bits (504), Expect = 4e-59
Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 8/194 (4%)
Query: 1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQP-GGGRNDIPSRLKRQFCIFNCVLPSDKAID 59
+ GF+ + L +QFV A P GR + R R I PS ++
Sbjct: 1404 VEKGGFWRTSD-HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLT 1462
Query: 60 NIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLS 119
I+ +R+ L + ++ + P + HY++S R+LS
Sbjct: 1463 QIYGTFNRALM----KLLPNLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELS 1517
Query: 120 RIWQGMVGTLSTVIDSEKVLML-LWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGV 178
R + ++ + T+ ++ LW HE R+F DR +K W D ++ + ++
Sbjct: 1518 RWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPS 1577
Query: 179 KYREMAGTDPVFVD 192
+ ++ +
Sbjct: 1578 VNLDALKRPILYSN 1591
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 194 bits (494), Expect = 1e-57
Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 9/195 (4%)
Query: 1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAID 59
M +GF+ + ++ T+ + V A P GR + R R I PS K++
Sbjct: 1366 MEKQGFWKTPE-NKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1424
Query: 60 NIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLS 119
I+ + + E R+ + + L+ +A+ T + HY+FS R+L+
Sbjct: 1425 QIYEIYYKAI----FKLVPEFRSYTEPFARASVHLYNECKARY-STGLQSHYLFSPRELT 1479
Query: 120 RIWQGMV-GTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGV 178
R+ +G+ + + + L+ LW +E R+F+DR + +K+ F+ + V++ L
Sbjct: 1480 RLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPN 1539
Query: 179 KYREMAGTDP-VFVD 192
+ + +F
Sbjct: 1540 QDLGNISSTSLLFSG 1554
Score = 26.3 bits (58), Expect = 7.4
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Query: 30 PG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNI--FSVIGEGHYNAKRGFPIEVRNLVKQ 86
PG GR+++P LK+ F F+ P I + G ++K +L +
Sbjct: 756 PGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQI---MGFEDSK--------SLASK 804
Query: 87 LIPLTRLLWKSTRAQLLPTPAKFHYVFSLR 116
++ LL + HY F LR
Sbjct: 805 IVHFLELLSSKCSSM-------NHYHFGLR 827
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 1e-05
Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 57/179 (31%)
Query: 22 QFVAAMAQPG--GGRNDIPSRLKRQFCIF-NCVL--------------PSDKAIDNIFSV 64
+V+++ +P G + + L F NC L +D + +
Sbjct: 66 GYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 65 IGEGHYNAKRGFPIEVRNLVKQLIPLTR----LLWKSTRAQLLPTPAKFHYVFS------ 114
I + + A R + K+ P + L+++ A+ +F
Sbjct: 123 I-KNYITA--------RIMAKR--PFDKKSNSALFRAVGEG----NAQLVAIFGGQGNTD 167
Query: 115 -----LRDLSRIWQGMVGTLSTVIDSEKVLMLLWKH--EVTRVFSDRFTIMSDKHWFDD 166
LRDL + + +VG L + S + L L + + +VF+ I+ W ++
Sbjct: 168 DYFEELRDLYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILE---WLEN 221
Score = 41.2 bits (96), Expect = 1e-04
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 32/99 (32%)
Query: 31 GGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKR-----GFPIEVRNLVK 85
+ + + + N LP+ K + I S++ N + G P + L
Sbjct: 343 NLTQEQVQDYVNK----TNSHLPAGKQV-EI-SLV-----NGAKNLVVSGPPQSLYGLNL 391
Query: 86 QL-------------IPLT-RLLWKSTRAQLLPTPAKFH 110
L IP + R L S R LP + FH
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNR--FLPVASPFH 428
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 5e-04
Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 64/210 (30%)
Query: 3 MKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIF-----NCVLPSD-- 55
+ G G+ T + + + K F IF NC P
Sbjct: 158 VLGS------GK-TWV-----ALDVCL------SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 56 KAIDNIFSVI-GEGHYNAKRGFPIEVR-NLVKQLIPLTRLL-WKSTRAQLLPTPAKFHYV 112
+ + + I + I++R + ++ L RLL K LL V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLL--------V 249
Query: 113 FSLRDL--SRIWQGM-VG--TLST-----VIDSEKVLMLLWKHEVTRVFSDRFTIMSDKH 162
L ++ ++ W + L T V D + H S T
Sbjct: 250 --LLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMTLT------ 299
Query: 163 WFDDEVLNLVEQNLGVKY----REMAGTDP 188
DEV +L+ + L + RE+ T+P
Sbjct: 300 --PDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 37.1 bits (85), Expect = 0.002
Identities = 27/168 (16%), Positives = 46/168 (27%), Gaps = 58/168 (34%)
Query: 48 FNC---VLPSDKAIDNIFSVIGEGHY---NAKRGF-PIEVRNLVKQLIPLTRLLWKSTRA 100
+C + K + + S H + P EV++L+ L + R
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--------LKYLDCRP 315
Query: 101 QLLPTPAKFHYVF-------SLRDLSRIWQG----MVGTLSTVIDS-------------- 135
Q LP S+RD W L+T+I+S
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 136 -------------EKVLMLLW---KHEVTRVFSDRFTIMS--DKHWFD 165
+L L+W V ++ S +K +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Score = 34.8 bits (79), Expect = 0.012
Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 43/165 (26%)
Query: 38 PSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGF---PIEVRNLVKQLIPLTRLL 94
+ +F +L + + F + E F PI+ ++ +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKF--VEEVL-RINYKFLMSPIKTEQRQPSMM---TRM 111
Query: 95 WKSTRAQLLPTPAKF--HYV-------------FSLRDLSRIW-QGMVGTLSTVIDSEKV 138
+ R +L F + V LR + G++G+ T +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----A 167
Query: 139 LMLLWKHEVTRVFSDRFTIMSDKHWF-------DDEVLNLVEQNL 176
L + ++V F I W + VL ++ Q L
Sbjct: 168 LDVCLSYKVQCKMD--FKI----FWLNLKNCNSPETVLEML-QKL 205
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 27.8 bits (60), Expect = 2.3
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 109 FHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEV 168
H+ FS R + W+ + D + + +++ + F++E
Sbjct: 425 AHFYFSPRTDTPFWRAN--KELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEF 482
Query: 169 LNL 171
N
Sbjct: 483 RNF 485
>1vtz_e Coat protein; jelly-roll beta-sandwich; 1.45A {Tobacco necrosis
satellite virus 1} PDB: 2buk_A 3rqv_A 3s4g_A
Length = 196
Score = 26.4 bits (57), Expect = 6.3
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 98 TRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTI 157
R + F +++ +++R GT TV++ + ++ + RFTI
Sbjct: 75 VRGTAITVSQTFRFIWFRDNMNR------GTTPTVLEVLNTANFMSQYNPITLQQKRFTI 128
Query: 158 MSD 160
+ D
Sbjct: 129 LKD 131
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 26.2 bits (58), Expect = 7.0
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 124 GMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREM 183
GM + E L++ FS R+T + +K F L
Sbjct: 63 GMEAVARQLTIDEDCLII-----RNGWFSYRWTQILEKGKFAKSSTVL-TAERTEDTEAP 116
Query: 184 AGTDPVFVD 192
PV ++
Sbjct: 117 KPFAPVDIE 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.431
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,004,208
Number of extensions: 169828
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 14
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)