RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9563
         (192 letters)



>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
           [TaxId: 70863]}
          Length = 442

 Score = 29.5 bits (65), Expect = 0.23
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 14  EFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVI---GEGHY 70
                +D   V  +  P G  ND  +++   F +       DK   NIF      G+G Y
Sbjct: 299 MAGDKMDSNVVTKLTYPMGDINDAKAKI-YPFKVHTGKQIYDKK-LNIFITPKTYGKGGY 356

Query: 71  NA 72
            +
Sbjct: 357 WS 358


>d2buka1 b.121.7.1 (A:12-195) STNV coat protein {Satellite tobacco
           necrosis virus [TaxId: 12881]}
          Length = 184

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 98  TRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTI 157
            R   +     F +++   +++R      GT  TV++       + ++    +   RFTI
Sbjct: 63  VRGTAITVSQTFRFIWFRDNMNR------GTTPTVLEVLNTANFMSQYNPITLQQKRFTI 116

Query: 158 MSDKHWFDDEVLNLVEQNLGVKYREM 183
                   D  LN       +K R +
Sbjct: 117 ------LKDVTLNCSLTGESIKDRII 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 734,205
Number of extensions: 32550
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 5
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)