BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9565
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRRSRT F+ QL+ELER F+ T YPD + REEL+QR L+EAR+Q + Q
Sbjct: 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQ 67
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna
Length = 61
Score = 66.6 bits (161), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 37/46 (80%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
QRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQ
Sbjct: 2 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 47
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 67
Score = 65.9 bits (159), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELE+ F THYPD F REEL+ ++GL+EAR+Q + Q
Sbjct: 5 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQ 55
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R RT FT QL ELE+ F THYPD F REEL+ ++GL+EAR+Q + Q
Sbjct: 1 RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQ 48
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 60.1 bits (144), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K+RR+RT FT QL ELE++F +THYPD + RE+L+ R L+EARVQ + Q
Sbjct: 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQ 58
>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain
Length = 60
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 95 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
S FT QL ELE+ F THYPD F REEL+ ++GL+EAR+Q + Q
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQ 48
>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Paired Box Protein Pax-6
Length = 80
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
R+RT+FT EQ+ LE+ F+ THYPD F RE L+ ++ L EAR+Q +
Sbjct: 9 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVW 54
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 54.7 bits (130), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
RR RT FT QL+ LE LF +T YPD FMREE++ ++ L E+RVQ
Sbjct: 8 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant
Length = 68
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
QRR RT+FT +QL ELE F HYPD REE++ L+EARV+
Sbjct: 3 QRRQRTHFTSQQLQELEATFQRNHYPDMSTREEIAVWTNLTEARVR 48
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Goosecoid
Length = 70
Score = 48.1 bits (113), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
RR RT FT EQL LE LF ET YPD RE+L++++ L E +V+
Sbjct: 8 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain
pdb|2LKX|A Chain A, Nmr Structure Of The Homeodomain Of Pitx2 In Complex With
A Taatcc Dna Binding Site
Length = 68
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
QRR RT+FT +QL ELE F YPD REE++ L+EARV+
Sbjct: 3 QRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVR 48
>pdb|2HOS|A Chain A, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOS|B Chain B, Phage-selected Homeodomain Bound To Unmodified Dna
pdb|2HOT|A Chain A, Phage Selected Homeodomain Bound To Modified Dna
pdb|2HOT|B Chain B, Phage Selected Homeodomain Bound To Modified Dna
Length = 63
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVST 151
++R RT F+ EQL L+R F+E Y R++LS LGL+EA+V+ + + + I ST
Sbjct: 4 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST 63
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVST 151
++R RT F+ EQL L+R F+E Y R++LS LGL+EA+++ + Q I ST
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKST 60
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
++R RT F+ EQL L+R F+E Y R++LS LGL+EA+++ + Q
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQ 52
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
++R RT F+ EQL L+R F+E Y R++LS LGL+EA+++ + Q
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQ 50
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
++R RT F+ EQL L+R F+E Y R++LS LGL+EA+++ + Q
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQ 50
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
++R RT F+ EQL L+R F+E Y R++LS LGL+EA+++
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48
>pdb|1ENH|A Chain A, Structural Studies Of The Engrailed Homeodomain
Length = 54
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R RT F+ EQL L+R F+E Y R++LS LGL+EA+++ + Q
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQ 48
>pdb|2DMT|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Barh-Like 1
Length = 80
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K RRSRT FT QL LE+ F++ Y R +L++ LGLS+ +V+ + Q
Sbjct: 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQ 66
>pdb|1DU0|A Chain A, Engrailed Homeodomain Q50a Variant Dna Complex
pdb|1DU0|B Chain B, Engrailed Homeodomain Q50a Variant Dna Complex
Length = 57
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
R RT F+ EQL L+R F+E Y R++LS LGL+EA+++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
Length = 61
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
++R RT F+ EQL +R F+E Y R++LS LGL+EA+++ + Q
Sbjct: 3 EKRPRTAFSSEQLARAKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQ 52
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1
From Homo Sapiens
Length = 71
Score = 36.6 bits (83), Expect = 0.017, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K RR RT FT EQL ELE+ F Y R +++ L LSE +V+ + Q
Sbjct: 6 KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQ 56
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L
Length = 67
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
RR RT FT Q+ LE +F YP + E+L+Q+L L R+Q + Q
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQ 50
>pdb|1QRY|A Chain A, Homeobox Protein Vnd (Ventral Nervous System Defective
Protein)
Length = 80
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
NK+R+ R FT Q ELER F + Y A RE L+ + L+ +V+ + Q
Sbjct: 10 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLTSLIRLTPTQVKIWFQ 61
>pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES
pdb|1NK3|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, MINIMIZED AVERAGE
Structure
pdb|1VND|A Chain A, VndNK-2 Protein (Homeodomain), Nmr
Length = 77
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
NK+R+ R FT Q ELER F + Y A RE L+ + L+ +V+ + Q
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQ 58
>pdb|1ZQ3|P Chain P, Nmr Solution Structure Of The Bicoid Homeodomain Bound To
The Consensus Dna Binding Site Taatcc
Length = 68
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ 137
RR+RT FT Q+ ELE+ F + Y A +LS +L L A+V+
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47
>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|E Chain E, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 93
Score = 32.0 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K+++ RT+FT Q+ ELE+ F + Y + R L++ L +++A+V+ + Q
Sbjct: 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQ 66
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+R RT+F QL ++ F H PDA ++L+Q+ GL++ +Q + Q
Sbjct: 8 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQ 56
>pdb|1JGG|A Chain A, Even-Skipped Homeodomain Complexed To At-Rich Dna
pdb|1JGG|B Chain B, Even-Skipped Homeodomain Complexed To At-Rich Dna
Length = 60
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
RR RT FT +QL LE+ F + +Y R EL+ +L L E+ ++ + Q
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQ 50
>pdb|2DJN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Dlx-5
Length = 70
Score = 31.6 bits (70), Expect = 0.48, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R+ RT ++ QL L+R F +T Y R EL+ LGL++ +V+ + Q
Sbjct: 8 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQ 56
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 97
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
RTNFT QL ELE+ F Y R E++ L L+E +V+ + Q
Sbjct: 38 RTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQ 83
>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
Length = 81
Score = 31.2 bits (69), Expect = 0.61, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+RR R +T Q ELE+ F HY R E++ L L+E +++ + Q
Sbjct: 20 RRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQ 69
>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
Insulin Gene Enhancer Protein Isl-1, 50 Structures
Length = 66
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS 132
K R RT +QL+ L + PDA M+E+L + GLS
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLS 43
>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
pdb|2H1K|B Chain B, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
Length = 63
Score = 28.1 bits (61), Expect = 6.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+R+RT +T QL ELE+ F Y R EL+ L L+E ++ + Q
Sbjct: 4 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQ 52
>pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 88
Score = 27.7 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+ +R RT++T Q ELE+ F Y R E++ L L+E +++ + Q
Sbjct: 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQ 77
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 93 RRSRTNFTLEQLNELERLFDETH----YPDAFMREELSQRLGLSEARVQNF 139
RR R NF+ +Q +E+ + +H YP +EEL+++ G++ ++V N+
Sbjct: 2 RRKRRNFS-KQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNW 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.125 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,741,826
Number of Sequences: 62578
Number of extensions: 169381
Number of successful extensions: 391
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 49
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)