BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9565
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35750|SHOX2_RAT Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus
GN=Shox2 PE=2 SV=2
Length = 237
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 114/208 (54%), Gaps = 33/208 (15%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ + Q
Sbjct: 45 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR----AK 100
Query: 151 TVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVNVPRLPTLPFSAS-----TAAAFSAF 205
N L+ G+++ ++ E CRVAPYVNV L +PF T +F
Sbjct: 101 CRKQENQLH-KGVLIG----AASQFEACRVAPYVNVGAL-RMPFQQDSHCNVTPLSFQVQ 154
Query: 206 DPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFS--LATL-----------AAL 252
L +A + A + P +F A P F LATL AA
Sbjct: 155 AHVQLDSAVRAAHHHLHPHLAAHGPY-MMFPA----PPFGLPLATLAADSASAASVVAAA 209
Query: 253 HQDRLLSKNSSIADLRLKAKKHAEAIEM 280
+ SKNSSIADLRLKAKKHA A+ +
Sbjct: 210 AAAKTTSKNSSIADLRLKAKKHAAALGL 237
>sp|O60902|SHOX2_HUMAN Short stature homeobox protein 2 OS=Homo sapiens GN=SHOX2 PE=2 SV=4
Length = 331
Score = 128 bits (322), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ + Q
Sbjct: 139 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR----AK 194
Query: 151 TVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVNVPRLPTLPFSASTAAAFSAFDPTLL 210
N L+ +I + Q E CRVAPYVNV L +PF + + +
Sbjct: 195 CRKQENQLHKGVLIGAASQ-----FEACRVAPYVNVGAL-RMPFQQDSHCNVTPLSFQVQ 248
Query: 211 SAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFS--LATL-----------AALHQDRL 257
+ +A A L P F LATL AA +
Sbjct: 249 AQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKT 308
Query: 258 LSKNSSIADLRLKAKKHAEAIEM 280
SKNSSIADLRLKAKKHA A+ +
Sbjct: 309 TSKNSSIADLRLKAKKHAAALGL 331
>sp|P70390|SHOX2_MOUSE Short stature homeobox protein 2 OS=Mus musculus GN=Shox2 PE=2 SV=1
Length = 331
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ + Q
Sbjct: 139 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR----AK 194
Query: 151 TVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVNVPRLPTLPFSASTAAAFSAFDPTLL 210
N L+ +I + Q E CRVAPYVNV L +PF + + +
Sbjct: 195 CRKQENQLHKGVLIGAASQ-----FEACRVAPYVNVGAL-RMPFQQDSHCNVTPLSFQVQ 248
Query: 211 SAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFS--LATL-----------AALHQDRL 257
+ +A A L P F LATL AA +
Sbjct: 249 AQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKT 308
Query: 258 LSKNSSIADLRLKAKKHAEAIEM 280
SKNSSIADLRLKAKKHA A+ +
Sbjct: 309 TSKNSSIADLRLKAKKHAAALGL 331
>sp|O15266|SHOX_HUMAN Short stature homeobox protein OS=Homo sapiens GN=SHOX PE=1 SV=1
Length = 292
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 108/202 (53%), Gaps = 37/202 (18%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ + Q
Sbjct: 116 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR----AK 171
Query: 151 TVTINNTLNPAGIIL--SNHQPVSTPLEPCRVAPYVNVPRLPTLPFSASTAAAFSAFDPT 208
N ++ G+IL +NH L+ CRVAPYVN+ L +PF A +
Sbjct: 172 CRKQENQMH-KGVILGTANH------LDACRVAPYVNMGAL-RMPFQQVQAQL--QLEGV 221
Query: 209 LLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFSLATLAALHQDRLL---------- 258
+ H + AA L P P F L +
Sbjct: 222 AHAHPHLHPHLAAHAPYLMFPP-----------PPFGLPIASLAESASAAAVVAAAAKSN 270
Query: 259 SKNSSIADLRLKAKKHAEAIEM 280
SKNSSIADLRLKA+KHAEA+ +
Sbjct: 271 SKNSSIADLRLKARKHAEALGL 292
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 97/217 (44%), Gaps = 43/217 (19%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ------------ 137
K+RR+RT FT QL ELE++F +THYPD + RE+L+ R L+EARVQ
Sbjct: 212 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 271
Query: 138 --NFSQVLNLLIDVSTVT----INNTLNPAGI----ILSNHQ---PVSTPLEPCRVAPYV 184
F Q+ + ST + N A I L N+ PV + PC P
Sbjct: 272 RERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVPCDPVPAC 331
Query: 185 NVPRLPTLPFSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSF 244
P S A++ + F + +H +G GS+F AAS P
Sbjct: 332 MSPHAHP---PGSGASSVTDFLSVSGAGSH-----------VGQTHMGSLFGAASLSPGL 377
Query: 245 SLATLAALHQDRLLSKNSSIADLRLKAKKHAEAIEMA 281
+ L DR K SSIA LR+KAK+H+ AI A
Sbjct: 378 NGYELNG-EPDR---KTSSIAALRMKAKEHSAAISWA 410
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 96/218 (44%), Gaps = 45/218 (20%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ------------ 137
K+RR+RT FT QL ELE++F +THYPD + RE+L+ R L+EARVQ
Sbjct: 198 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 257
Query: 138 --NFSQVLNLLIDVSTV----------TINNTLNPAGIILSNHQPVSTPLEPCRVAPYVN 185
F Q+ + ST NP+ I + ++P+ C V P
Sbjct: 258 RERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWI---GNNGAASPVPAC-VVPCDP 313
Query: 186 VPRL--PTLPFSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPS 243
VP P S A+ + F + +H +G GS+F AA P
Sbjct: 314 VPACMSPHAHPPGSGASGVTDFLSVSGAGSH-----------VGQTHMGSLFGAAGLSPG 362
Query: 244 FSLATLAALHQDRLLSKNSSIADLRLKAKKHAEAIEMA 281
+ L DR K SSIA LR+KAK+H+ AI A
Sbjct: 363 LNGYELNG-EPDR---KTSSIAALRMKAKEHSAAISWA 396
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 97/218 (44%), Gaps = 45/218 (20%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ------------ 137
K+RR+RT FT QL ELE++F +THYPD + RE+L+ R L+EARVQ
Sbjct: 200 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 259
Query: 138 --NFSQVLNLLIDVSTV----------TINNTLNPAGIILSNHQPVSTPLEPCRVAPYVN 185
F Q+ + ST NP+ I + ++P+ C V P
Sbjct: 260 RERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWI---GNNGAASPVPAC-VVPCDP 315
Query: 186 VPRL--PTLPFSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPS 243
VP P S A++ S F + +H +G GS+F AA P
Sbjct: 316 VPACMSPHAHPPGSGASSVSDFLSVSGAGSH-----------VGQTHMGSLFGAAGISPG 364
Query: 244 FSLATLAALHQDRLLSKNSSIADLRLKAKKHAEAIEMA 281
+ + DR K SSIA LR+KAK+H+ AI A
Sbjct: 365 LNGYEMNG-EPDR---KTSSIAALRMKAKEHSAAISWA 398
>sp|Q6SZ65|OTP_LYTVA Homeobox protein orthopedia OS=Lytechinus variegatus GN=Otp PE=2
SV=1
Length = 360
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQ+R RT FT QLNELER F +THYPD FMREE++ R+GL+E+RVQ + Q
Sbjct: 111 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVWFQ 161
>sp|P56672|OTP_DROME Homeobox protein orthopedia OS=Drosophila melanogaster GN=otp PE=2
SV=2
Length = 409
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVST 151
Q+R RT FT QLNELER F +THYPD FMREE++ R+GL+E+RVQ + Q
Sbjct: 109 QKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQVWFQNRRAKWKKRK 168
Query: 152 VTINNTLNPAGIILSNHQP 170
T N P ++ S+ P
Sbjct: 169 KTTNVFRTPGALLPSHGLP 187
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVW 266
>sp|O76971|OTP_PARLI Homeobox protein orthopedia OS=Paracentrotus lividus GN=OTP PE=2
SV=1
Length = 364
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQ+R RT FT QLNELER F +THYPD FMREE++ R+GL+E+RVQ + Q
Sbjct: 115 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVWFQNRRAKWKKR 174
Query: 151 TVTINNTLNPAGIILSNH 168
T N P G +L +H
Sbjct: 175 KKTTNVFRTP-GALLPSH 191
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVW 266
>sp|Q6SR68|OTP_HELTB Homeobox protein orthopedia OS=Heliocidaris tuberculata GN=Otp PE=2
SV=1
Length = 363
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQ+R RT FT QLNELER F +THYPD FMREE++ R+GL+E+RVQ + Q
Sbjct: 113 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVWFQNRRAKWKKR 172
Query: 151 TVTINNTLNPAGIILSNH 168
T N P G +L +H
Sbjct: 173 KKTTNVFRTP-GALLPSH 189
>sp|Q6SR69|OTP_HELER Homeobox protein orthopedia OS=Heliocidaris erythrogramma GN=Otp
PE=2 SV=1
Length = 363
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQ+R RT FT QLNELER F +THYPD FMREE++ R+GL+E+RVQ + Q
Sbjct: 113 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVWFQNRRAKWKKR 172
Query: 151 TVTINNTLNPAGIILSNH 168
T N P G +L +H
Sbjct: 173 KKTTNVFRTP-GALLPSH 189
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 195 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVW 243
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 219 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVW 267
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVW 266
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 62/122 (50%), Gaps = 23/122 (18%)
Query: 20 VNNENECDDSNRLPSSESSRHLYFTDSNSDLKVNNENECDDSNRLPSSESSRHHISRHLS 79
V E C D++ P E S H ++ D+K ++ C + S+S + R
Sbjct: 166 VVKEEACGDNSLSPKDEESLH-----NDGDVKDGEDSVCLSAG----SDSEEGMLKR--- 213
Query: 80 LSPISSCKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRR RT FT QL ELER F +THYPD F REEL+ RL L+EARVQ +
Sbjct: 214 -----------KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVW 262
Query: 140 SQ 141
Q
Sbjct: 263 FQ 264
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 216 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVW 264
>sp|Q7YTC2|OTP_SACKO Homeobox protein orthopedia OS=Saccoglossus kowalevskii GN=otp PE=2
SV=1
Length = 322
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQ+R RT FT QLNELER F +THYPD FMREE++ R+GL+E+RVQ + Q
Sbjct: 89 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQVWFQ 139
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139
KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L+EARVQ +
Sbjct: 214 KQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVW 262
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 12/133 (9%)
Query: 19 KVNNENECDDSNRLPSSESSRHLYFTDS--NSDLKVNNENECDDSNRLPSS----ESSRH 72
K+ E CD S S SR + D+ ++D+ + + D + SS S H
Sbjct: 128 KLIREGVCDRSTAPSVSAISRLVRGRDAPLDNDMSSASGSPAGDGTKASSSCGSDVSGGH 187
Query: 73 HISRHLSLSPISSCKS------SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELS 126
H + S IS C+S KQRR RT F+ QL+ELER F+ T YPD + REEL+
Sbjct: 188 HNNGKPSDEDISDCESEPGIALKRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELA 247
Query: 127 QRLGLSEARVQNF 139
QR L+EAR+Q +
Sbjct: 248 QRTNLTEARIQVW 260
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 23/202 (11%)
Query: 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ------ 141
K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 133 GKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKW 192
Query: 142 VLNLLIDVSTVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVN-VPRLPTLPFSASTAA 200
+D ST+ ++++ +LS ++P P+ P V N +P P L S+A
Sbjct: 193 RRQEKMDTSTMKLHDS-----PMLSFNRP---PMPPS-VGQVANPMPLDPWLTSPISSAT 243
Query: 201 AFSAFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFSLATLAALHQDRLL-- 258
P +S+ ++ + L N+P G + P A D+
Sbjct: 244 PMHTI-PGFMSSPQTLQPTYSSHSFL-NSPPGMVQGMQPMGP--PAYQCAPPFNDKYPVE 299
Query: 259 -SKNSSIADLRLKAKKHAEAIE 279
+NSSIA LR+KAK+H ++++
Sbjct: 300 DDRNSSIAALRMKAKEHIQSMD 321
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 34/206 (16%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ--------- 141
K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 129 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 188
Query: 142 ----VLNL-LIDVSTVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVNVPRLPTLPFSA 196
V ++ L D ++ N + P+ + + S PL+ P N L +LP
Sbjct: 189 EKLEVTSMKLQDSPMLSFNRSPQPSAMSALS---SSLPLDSWLTPPLSNSTALQSLPGFV 245
Query: 197 STAAAF-SAFDPTLLSAAHQYAAAAATVAALGNAPN---GSIFSAASQYPSFSLATLAAL 252
+T + ++ P A + A+G P G+ F +YP
Sbjct: 246 TTPTSLPGSYTPPPFINPASMGHALQPLGAMGPPPPYQCGANF--VDKYP---------- 293
Query: 253 HQDRLLSKNSSIADLRLKAKKHAEAI 278
+ + +N+SIA LR+KAK+H ++
Sbjct: 294 -LEEIDPRNNSIASLRMKAKEHIQSF 318
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 38/52 (73%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER F +THYPD F REEL+ RL L+EARVQ + Q
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQ 377
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 38/52 (73%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER F +THYPD F REEL+ RL L+EARVQ + Q
Sbjct: 330 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQ 381
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 87 KSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ----- 141
+ K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 117 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAK 176
Query: 142 -VLNLLIDVSTVTINNTLNPAGIILS-----NHQPV-----STPLEPCRVAPYVNVPRLP 190
++VS++ + ++ ILS PV S PLE P L
Sbjct: 177 WRRQEKLEVSSMKLQDS-----PILSFSRSPQAAPVGALGGSLPLETWLGPPVPGGAALQ 231
Query: 191 TLP-FSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPN---GSIFSAASQYPSFSL 246
+LP F+A +++ P + A + A+G P G+ F F L
Sbjct: 232 SLPGFAAPPQGLPASYTPPPFLNSPAVTHALQPLGAMGPPPPYQCGAAFVD-----KFPL 286
Query: 247 ATLAALHQDRLLSKNSSIADLRLKAKKHAEAI 278
D +N+SIA LR+KAK+H ++I
Sbjct: 287 --------DEGDPRNTSIASLRMKAKEHIQSI 310
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 39/208 (18%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ------VLN 144
K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 136 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 195
Query: 145 LLIDVSTVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVN-VPRLPTLPFSASTAAAFS 203
ID ST+ ++++ +LS ++P P V P N +P P LP S+A
Sbjct: 196 EKIDASTMKLHDS-----PMLSFNRPSMHPT----VGPMNNSLPLDPWLPSPLSSA---- 242
Query: 204 AFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFSLATLAALHQ--------- 254
+ H L G F + Q + S+ +A
Sbjct: 243 -------TPVHSIPGFMGPTQGLQTGYPGHSFLSPPQPMAQSMQPMAPPPYQCPPPFTDK 295
Query: 255 ---DRLLSKNSSIADLRLKAKKHAEAIE 279
+ + ++SSIA LR+KAK+H ++++
Sbjct: 296 YPLEDVDQRSSSIAALRMKAKEHIQSMD 323
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 40/51 (78%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K+RR+RTNFT QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQ + Q
Sbjct: 108 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQ 158
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 38/52 (73%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER F +THYPD F REEL+ RL L+EARVQ + Q
Sbjct: 328 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQ 379
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 40/51 (78%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K+RR+RTNFT QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQ + Q
Sbjct: 108 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALAVRLDLVESRVQVWFQ 158
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 40/51 (78%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K+RR+RTNFT QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQ + Q
Sbjct: 104 KRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQ 154
>sp|O09113|OTP_MOUSE Homeobox protein orthopedia OS=Mus musculus GN=Otp PE=2 SV=1
Length = 325
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQ + Q
Sbjct: 106 RHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQ 153
>sp|Q5XKR4|OTP_HUMAN Homeobox protein orthopedia OS=Homo sapiens GN=OTP PE=1 SV=1
Length = 325
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQ + Q
Sbjct: 106 RHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQ 153
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELE+ F THYPD F REEL+ ++GL+EAR+Q + Q
Sbjct: 84 KQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQ 134
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 96/213 (45%), Gaps = 41/213 (19%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ--------- 141
KQRR+RT FTL+QL LE +F +THYPD F REEL+ ++ L+EARVQ + Q
Sbjct: 32 KQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKT 91
Query: 142 ----------VLNLLIDVSTVTIN--NTLNPAGIILSNHQPVSTPLEPCRVAPYVNVPRL 189
+ +V+ + N+ P S + + R
Sbjct: 92 ERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQTRSKKEALEAQQSLGRTV-------G 144
Query: 190 PTLPFSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFSLATL 249
PT PF S TLL+ A YA A + VA+L P S SF L T
Sbjct: 145 PTGPFFPSCLPG------TLLNTA-TYAQALSHVASLKGGPLCSCCVPDPMGLSF-LPTY 196
Query: 250 AALHQDRLLSKNSSIADLRLKAKKHAEAIEMAA 282
++ +S+A LR+KA++H+EA+ +A
Sbjct: 197 GCQS-----NRTASVAALRMKAREHSEAVLQSA 224
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 97/211 (45%), Gaps = 37/211 (17%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150
KQRR+RT FTL+QL LE +F +THYPD F REEL+ ++ L+EARVQ + Q
Sbjct: 32 KQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRR------ 85
Query: 151 TVTINNTLNPAGIILSNHQP-VSTPLEPCRVAPYVNVPRLP----------------TLP 193
T A S+ +P P+ P N+ P +L
Sbjct: 86 -AKWRKTERGA----SDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLG 140
Query: 194 FSASTAAAF--SAFDPTLLSAAHQYAAAAATVAALGNAPNGSIFSAASQYPSFSLATLAA 251
+ A F S TLL+ A YA A + VA+L P S SF L T
Sbjct: 141 RTVGPAGPFFPSCLPGTLLNTA-TYAQALSHVASLKGGPLCSCCVPDPMGLSF-LPTYGC 198
Query: 252 LHQDRLLSKNSSIADLRLKAKKHAEAIEMAA 282
++ +S+A LR+KA++H+EA+ +A
Sbjct: 199 QS-----NRTASVATLRMKAREHSEAVLQSA 224
>sp|Q6DGH9|OTBP_DANRE Homeobox protein orthopedia B OS=Danio rerio GN=otpb PE=1 SV=1
Length = 315
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVSTVT 153
R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQ + Q T
Sbjct: 101 RHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKT 160
Query: 154 INNTLNPAGIILSNH 168
N P G +L H
Sbjct: 161 TNVFRAP-GTLLPTH 174
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 96/226 (42%), Gaps = 62/226 (27%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ------VL 143
K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 135 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 194
Query: 144 NLLIDVSTVTINNTLNPAGIILSNHQPVSTPLEPCR--------------VAPYVNVPRL 189
++VS++ + ++ ++ + P S+ L P + P++
Sbjct: 195 QEKLEVSSMKLQDSP----LLSFSRSPPSSALAPLGGPGSGSGPPGSALPLEPWLG---- 246
Query: 190 PTLPFSASTA-AAFSAFDPTLLSAAHQY---------AAAAATVAALGNAPN-------G 232
P LP +TA + F P Y A + LG P G
Sbjct: 247 PPLPGGGATALQSLPGFGPPGQGLPASYTPPPPFLNSAPLGPGLQQLGPPPAYPCAPAFG 306
Query: 233 SIFSAASQYPSFSLATLAALHQDRLLSKNSSIADLRLKAKKHAEAI 278
FS YP +NSSIA LRLKAK+H +AI
Sbjct: 307 DKFSLEEAYP-----------------RNSSIAALRLKAKEHIQAI 335
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 43/214 (20%)
Query: 87 KSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ----- 141
+ K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 31 QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAK 90
Query: 142 -VLNLLIDVSTVTINNTLNPAGIILSNHQPVSTPLEPCRVAPYVN-VPRLPTL--PFSAS 197
++ S++ +++T +LS ++P T V P N +P P L P S++
Sbjct: 91 WRRQEKMEASSMKLHDT-----PMLSFNRPPMT----ANVGPMSNSLPLDPWLTSPISSA 141
Query: 198 TA--------AAFSAFDPTLLSAAHQY----AAAAATVAALGNAPNGSIFSAASQYPSFS 245
T A A P H + A + + AP +YP
Sbjct: 142 TPVHSIPGFMGAPQALQPPY--GGHSFLNTPPGMAQGMQPMAPAPYQCGTPFVDKYP--- 196
Query: 246 LATLAALHQDRLLSKNSSIADLRLKAKKHAEAIE 279
L + Q ++SSIA LR+KAK+H + I+
Sbjct: 197 ---LEDVDQ-----RSSSIASLRMKAKEHIQTID 222
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQ + Q
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQ 147
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQ + Q
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQ 147
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 96/227 (42%), Gaps = 63/227 (27%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ------VL 143
K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 134 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRR 193
Query: 144 NLLIDVSTVTINNTLNPAGIILSNHQPVSTPLEPCR---------------VAPYVNVPR 188
++VS++ + ++ ++ + P S+ L P + P++
Sbjct: 194 QEKLEVSSMKLQDSP----LLSFSRSPPSSALAPLGTGPGSGSGPPGSALPLEPWLG--- 246
Query: 189 LPTLPFSASTA-AAFSAFDPTLLSAAHQY---------AAAAATVAALGNAPN------- 231
P LP +TA + F P Y A + LG P
Sbjct: 247 -PPLPGGGATALQSLPGFGPPGQGLPASYTPPPPFLNSAPLGPGLQQLGPPPAYPCAPAF 305
Query: 232 GSIFSAASQYPSFSLATLAALHQDRLLSKNSSIADLRLKAKKHAEAI 278
G FS YP +NSSIA LRLKAK+H +AI
Sbjct: 306 GDKFSLEEAYP-----------------RNSSIAALRLKAKEHIQAI 335
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+ KQRR RT FT QL ELER F +THYPD F REEL+ R+ L+EARVQ + Q
Sbjct: 208 TKRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQ 261
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQ + Q
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQ 139
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 75 SRHLSLSP-----ISSCKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRL 129
S HL LSP + K+ +K+RR+RT F+ QL ELE++F +THYPD + RE+L+ R
Sbjct: 131 SLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRT 190
Query: 130 GLSEARVQNFSQ 141
L+EARVQ + Q
Sbjct: 191 DLTEARVQVWFQ 202
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQ + Q
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQ 139
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 39/208 (18%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ------VLN 144
K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQ + Q
Sbjct: 141 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 200
Query: 145 LLIDVSTVTINNTLNPAGIILSNHQPVST---------PLEPCRVAPYVNVPRLPTLPFS 195
+D S V +++ + ++ N P+ T PL+P +P + + ++P
Sbjct: 201 EKMDASAVKLHD----SPMLSFNRPPMHTNVGPMSNSLPLDPWLTSPLTSTTPVHSIPGF 256
Query: 196 ASTAAAFSAFDPTLLSAAHQY----AAAAATVAALGNAPNGSIFSAASQYPSFSLATLAA 251
+ A P H + + ++ + P +YP L
Sbjct: 257 MGPSQGLQAGYP-----GHGFLNTPQSMGQSMQPMAPPPYQCPAVFTDKYP------LED 305
Query: 252 LHQDRLLSKNSSIADLRLKAKKHAEAIE 279
+Q ++SSIA LR+KAK+H ++++
Sbjct: 306 TNQ-----RSSSIASLRMKAKEHIQSMD 328
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQ + Q
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQ 139
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 100/228 (43%), Gaps = 64/228 (28%)
Query: 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQ---------- 137
SS+K+RR RT FT QL ELE++F +THYPD ++RE+L+ R L+EARVQ
Sbjct: 137 SSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKW 196
Query: 138 ----NFSQV------LNLLIDVSTV-------TINNTL---NPAG--IILSNHQPVSTPL 175
+ Q+ D+S + I N L NP+G ++ S P
Sbjct: 197 RKRERYGQIQQAKSHFAATYDISVLPRADSYPQIQNNLWAGNPSGGSVVTS----CMLPR 252
Query: 176 EP--CRVAPYVNVPRLPTLPFSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPNGS 233
EP C + PY + S+ T + ++ F +H T + L + NG
Sbjct: 253 EPSSC-MTPYSH---------SSRTDSPYTGFTNHQNQFSHMPLNIFFTESLLSGSANGH 302
Query: 234 IFSAASQYPSFSLATLAALHQDRLLSKNSSIADLRLKAKKHAEAIEMA 281
F A P F ++SSIA LR+KAK+H I A
Sbjct: 303 SFEAK---PEFE-------------RRSSSIAVLRMKAKEHTANISWA 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.123 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,832,009
Number of Sequences: 539616
Number of extensions: 3776827
Number of successful extensions: 26359
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 260
Number of HSP's that attempted gapping in prelim test: 17615
Number of HSP's gapped (non-prelim): 7344
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)