Query psy9565
Match_columns 288
No_of_seqs 298 out of 1715
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 22:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.9 7.5E-22 2.6E-26 146.1 6.9 63 87-149 12-74 (80)
2 1wh5_A ZF-HD homeobox family p 99.8 1.5E-21 5.1E-26 144.4 7.5 60 89-148 14-77 (80)
3 2kt0_A Nanog, homeobox protein 99.8 2.5E-21 8.7E-26 144.5 7.9 63 87-149 17-79 (84)
4 1wh7_A ZF-HD homeobox family p 99.8 2.4E-21 8.2E-26 143.2 7.4 60 88-148 13-77 (80)
5 2dms_A Homeobox protein OTX2; 99.8 4.9E-21 1.7E-25 141.7 7.7 67 89-160 4-70 (80)
6 1puf_A HOX-1.7, homeobox prote 99.8 3.9E-21 1.4E-25 141.2 6.4 63 88-150 9-71 (77)
7 2cue_A Paired box protein PAX6 99.8 3.8E-21 1.3E-25 142.3 6.3 64 90-153 5-68 (80)
8 2cra_A Homeobox protein HOX-B1 99.8 5.2E-21 1.8E-25 138.0 6.4 61 89-149 4-64 (70)
9 2da3_A Alpha-fetoprotein enhan 99.8 3.7E-21 1.3E-25 142.2 5.5 63 86-148 11-73 (80)
10 3a01_A Homeodomain-containing 99.8 4.9E-21 1.7E-25 145.7 6.1 63 88-150 13-75 (93)
11 2dmq_A LIM/homeobox protein LH 99.8 1.1E-20 3.8E-25 139.7 7.5 60 90-149 5-64 (80)
12 2da2_A Alpha-fetoprotein enhan 99.8 8.8E-21 3E-25 136.7 5.9 61 89-149 4-64 (70)
13 2vi6_A Homeobox protein nanog; 99.8 6.6E-21 2.3E-25 134.2 5.0 59 91-149 2-60 (62)
14 1nk2_P Homeobox protein VND; h 99.8 1.4E-20 4.8E-25 138.2 7.0 62 88-149 5-66 (77)
15 2da1_A Alpha-fetoprotein enhan 99.8 8E-21 2.7E-25 136.9 5.5 61 89-149 4-64 (70)
16 2dmu_A Homeobox protein goosec 99.8 1.2E-20 4.1E-25 136.0 6.3 59 90-148 5-63 (70)
17 2djn_A Homeobox protein DLX-5; 99.8 1.1E-20 3.9E-25 136.2 6.1 61 89-149 4-64 (70)
18 2h1k_A IPF-1, pancreatic and d 99.8 9.2E-21 3.1E-25 133.9 4.9 58 91-148 2-59 (63)
19 1ahd_P Antennapedia protein mu 99.8 1.8E-20 6.1E-25 134.4 5.4 57 92-148 2-58 (68)
20 2hdd_A Protein (engrailed home 99.8 1.4E-20 4.8E-25 132.0 4.6 57 92-148 3-59 (61)
21 1bw5_A ISL-1HD, insulin gene e 99.8 2.1E-20 7.3E-25 133.2 5.4 59 91-149 2-60 (66)
22 1yz8_P Pituitary homeobox 2; D 99.8 1.6E-20 5.6E-25 134.6 4.7 58 91-148 2-59 (68)
23 2m0c_A Homeobox protein arista 99.8 2.8E-20 9.6E-25 135.7 5.9 62 88-149 5-66 (75)
24 1fjl_A Paired protein; DNA-bin 99.8 2E-20 6.9E-25 138.7 5.2 63 87-149 13-75 (81)
25 2e1o_A Homeobox protein PRH; D 99.8 3.6E-20 1.2E-24 133.5 6.4 57 91-147 6-62 (70)
26 2l7z_A Homeobox protein HOX-A1 99.8 2.8E-20 9.7E-25 135.2 5.9 61 89-149 4-64 (73)
27 1zq3_P PRD-4, homeotic bicoid 99.8 3E-20 1E-24 133.2 5.7 59 92-150 2-60 (68)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 3.6E-20 1.2E-24 132.8 5.8 58 92-149 2-59 (68)
29 2da4_A Hypothetical protein DK 99.8 1.9E-20 6.3E-25 138.6 4.3 59 89-147 5-67 (80)
30 1ig7_A Homeotic protein MSX-1; 99.8 3.3E-20 1.1E-24 128.8 5.2 56 93-148 1-56 (58)
31 2r5y_A Homeotic protein sex co 99.8 2.9E-20 9.9E-25 140.0 4.8 61 89-149 25-85 (88)
32 2dn0_A Zinc fingers and homeob 99.8 6.5E-20 2.2E-24 134.3 6.1 57 93-149 9-65 (76)
33 1akh_A Protein (mating-type pr 99.8 3.7E-20 1.3E-24 129.8 4.3 58 90-147 3-60 (61)
34 1jgg_A Segmentation protein EV 99.8 4.9E-20 1.7E-24 128.8 4.9 57 93-149 2-58 (60)
35 1b8i_A Ultrabithorax, protein 99.8 3.9E-20 1.3E-24 137.2 4.6 60 90-149 18-77 (81)
36 3rkq_A Homeobox protein NKX-2. 99.8 6E-20 2.1E-24 127.3 5.0 56 92-147 2-57 (58)
37 3nar_A ZHX1, zinc fingers and 99.8 4.1E-20 1.4E-24 141.4 4.6 63 88-150 21-83 (96)
38 2ecc_A Homeobox and leucine zi 99.8 1.1E-19 3.9E-24 132.1 6.5 54 95-148 6-59 (76)
39 3a03_A T-cell leukemia homeobo 99.8 3.7E-20 1.3E-24 127.7 3.6 53 97-149 2-54 (56)
40 2hi3_A Homeodomain-only protei 99.8 1.8E-19 6.1E-24 130.9 6.3 56 93-148 3-59 (73)
41 2k40_A Homeobox expressed in E 99.8 1.1E-19 3.9E-24 129.8 5.1 57 93-149 2-58 (67)
42 2cuf_A FLJ21616 protein; homeo 99.8 2E-19 6.9E-24 137.3 6.6 60 89-148 4-78 (95)
43 2da5_A Zinc fingers and homeob 99.8 2.2E-19 7.6E-24 131.1 6.5 55 94-148 9-63 (75)
44 3a02_A Homeobox protein arista 99.8 8.3E-20 2.8E-24 127.6 4.0 55 95-149 2-56 (60)
45 1uhs_A HOP, homeodomain only p 99.8 2.1E-19 7.1E-24 130.2 6.3 56 93-148 2-58 (72)
46 1wi3_A DNA-binding protein SAT 99.8 1.6E-19 5.6E-24 126.7 5.5 58 90-147 5-63 (71)
47 1b72_A Protein (homeobox prote 99.8 1.4E-19 4.9E-24 138.6 4.9 59 90-148 32-90 (97)
48 2ly9_A Zinc fingers and homeob 99.8 4.6E-19 1.6E-23 129.0 6.6 58 92-149 6-63 (74)
49 2ecb_A Zinc fingers and homeob 99.8 1.8E-18 6.2E-23 129.9 8.6 52 98-149 17-68 (89)
50 1du6_A PBX1, homeobox protein 99.8 5E-19 1.7E-23 125.2 4.7 58 92-149 3-63 (64)
51 1x2n_A Homeobox protein pknox1 99.8 1.1E-18 3.6E-23 126.8 6.4 60 89-148 4-66 (73)
52 1e3o_C Octamer-binding transcr 99.7 4.6E-19 1.6E-23 147.8 4.8 60 90-149 99-158 (160)
53 2dmp_A Zinc fingers and homeob 99.7 2.9E-18 9.8E-23 129.3 8.4 51 98-148 19-69 (89)
54 2da6_A Hepatocyte nuclear fact 99.7 9.4E-19 3.2E-23 134.0 5.7 62 89-150 3-85 (102)
55 1k61_A Mating-type protein alp 99.7 8.4E-19 2.9E-23 122.5 4.4 55 95-149 1-58 (60)
56 2cqx_A LAG1 longevity assuranc 99.7 4.4E-19 1.5E-23 128.5 3.0 56 93-148 9-65 (72)
57 1b72_B Protein (PBX1); homeodo 99.7 1E-18 3.4E-23 131.2 5.0 58 93-150 2-62 (87)
58 1lfb_A Liver transcription fac 99.7 7E-19 2.4E-23 134.9 4.2 62 88-149 5-87 (99)
59 1au7_A Protein PIT-1, GHF-1; c 99.7 9.6E-19 3.3E-23 143.7 5.2 61 89-149 84-144 (146)
60 1puf_B PRE-B-cell leukemia tra 99.7 1.9E-18 6.6E-23 125.4 5.7 58 93-150 2-62 (73)
61 2dmn_A Homeobox protein TGIF2L 99.7 6.5E-18 2.2E-22 125.7 7.8 59 90-148 5-66 (83)
62 2xsd_C POU domain, class 3, tr 99.7 1.1E-18 3.8E-23 145.9 4.0 62 88-149 95-156 (164)
63 3d1n_I POU domain, class 6, tr 99.7 3E-18 1E-22 141.6 5.8 61 89-149 90-150 (151)
64 2l9r_A Homeobox protein NKX-3. 99.7 3E-18 1E-22 122.8 4.9 53 97-149 9-61 (69)
65 1mnm_C Protein (MAT alpha-2 tr 99.7 3.9E-18 1.3E-22 128.0 5.3 59 90-148 25-86 (87)
66 3nau_A Zinc fingers and homeob 99.7 3.4E-18 1.1E-22 120.3 3.8 49 100-148 12-60 (66)
67 1x2m_A LAG1 longevity assuranc 99.7 3.5E-18 1.2E-22 120.2 3.7 48 101-148 9-57 (64)
68 2e19_A Transcription factor 8; 99.7 1E-17 3.4E-22 118.5 4.5 51 97-147 8-58 (64)
69 1le8_B Mating-type protein alp 99.7 1E-17 3.5E-22 124.6 4.7 57 93-149 3-62 (83)
70 3l1p_A POU domain, class 5, tr 99.7 8.4E-18 2.9E-22 139.4 4.6 60 90-149 94-153 (155)
71 2d5v_A Hepatocyte nuclear fact 99.7 2.1E-17 7.1E-22 138.3 4.9 61 89-149 94-154 (164)
72 1ic8_A Hepatocyte nuclear fact 99.6 1.1E-16 3.6E-21 137.0 3.2 61 88-148 111-192 (194)
73 3k2a_A Homeobox protein MEIS2; 99.6 7E-16 2.4E-20 110.0 3.7 52 98-149 4-58 (67)
74 2h8r_A Hepatocyte nuclear fact 99.5 2.5E-15 8.7E-20 129.8 4.6 62 86-147 136-218 (221)
75 2da7_A Zinc finger homeobox pr 99.5 2.2E-14 7.6E-19 101.4 3.7 47 101-147 14-60 (71)
76 2lk2_A Homeobox protein TGIF1; 99.4 1.2E-13 4.2E-18 103.0 5.7 54 97-150 10-66 (89)
77 1mh3_A Maltose binding-A1 home 99.4 1.4E-13 4.9E-18 129.4 2.8 55 93-147 366-420 (421)
78 2nzz_A Penetratin conjugated G 98.8 1.2E-09 4.3E-14 67.7 1.7 20 134-153 1-20 (37)
79 2ys9_A Homeobox and leucine zi 95.4 0.011 3.7E-07 41.4 3.3 38 105-142 19-56 (70)
80 2glo_A Brinker CG9653-PA; prot 81.3 1.7 5.8E-05 28.6 3.9 45 96-141 3-47 (59)
81 2elh_A CG11849-PA, LD40883P; s 81.0 1.8 6.2E-05 30.9 4.2 45 92-141 16-60 (87)
82 1jko_C HIN recombinase, DNA-in 76.4 1.9 6.6E-05 26.6 2.8 43 99-146 6-48 (52)
83 2rgt_A Fusion of LIM/homeobox 75.2 0.054 1.8E-06 44.3 -6.3 31 90-120 134-164 (169)
84 1tc3_C Protein (TC3 transposas 74.3 4.4 0.00015 24.4 4.1 40 98-142 5-44 (51)
85 1hlv_A CENP-B, major centromer 73.2 4.4 0.00015 30.7 4.6 49 95-146 4-52 (131)
86 1p4w_A RCSB; solution structur 70.0 3.9 0.00013 30.1 3.5 46 96-147 32-77 (99)
87 3c57_A Two component transcrip 64.9 4 0.00014 29.5 2.6 45 97-147 26-70 (95)
88 3hug_A RNA polymerase sigma fa 63.6 5.7 0.00019 28.3 3.3 45 98-147 37-81 (92)
89 1je8_A Nitrate/nitrite respons 61.1 4.4 0.00015 28.4 2.2 46 97-148 20-65 (82)
90 2o8x_A Probable RNA polymerase 60.1 5.8 0.0002 26.2 2.6 45 98-147 15-59 (70)
91 2cqr_A RSGI RUH-043, DNAJ homo 59.8 34 0.0012 23.6 6.6 50 93-142 15-65 (73)
92 1fse_A GERE; helix-turn-helix 58.6 7.1 0.00024 26.1 2.9 45 97-147 10-54 (74)
93 2x48_A CAG38821; archeal virus 54.8 10 0.00035 23.9 3.0 36 101-141 18-53 (55)
94 2p7v_B Sigma-70, RNA polymeras 54.6 11 0.00036 25.1 3.2 49 98-147 5-53 (68)
95 1x3u_A Transcriptional regulat 52.5 6.9 0.00024 26.6 2.0 45 98-148 16-60 (79)
96 2jn6_A Protein CGL2762, transp 51.0 16 0.00053 26.1 3.8 43 96-141 3-45 (97)
97 3ulq_B Transcriptional regulat 47.2 17 0.0006 25.9 3.5 47 95-147 26-72 (90)
98 2rnj_A Response regulator prot 46.3 12 0.0004 26.6 2.4 45 97-147 28-72 (91)
99 1s7o_A Hypothetical UPF0122 pr 42.8 16 0.00055 27.4 2.8 45 98-147 22-66 (113)
100 2cqq_A RSGI RUH-037, DNAJ homo 41.4 41 0.0014 23.1 4.6 44 96-139 8-51 (72)
101 1ku3_A Sigma factor SIGA; heli 40.7 20 0.00067 24.1 2.8 49 98-147 10-58 (73)
102 3mzy_A RNA polymerase sigma-H 39.5 20 0.00068 27.3 3.1 44 98-147 109-152 (164)
103 2q0o_A Probable transcriptiona 39.4 17 0.00058 30.4 2.8 46 96-147 173-218 (236)
104 2xi8_A Putative transcription 38.6 11 0.00039 24.1 1.3 24 121-144 16-39 (66)
105 3fmy_A HTH-type transcriptiona 38.6 21 0.00071 24.0 2.7 42 97-145 9-50 (73)
106 2k27_A Paired box protein PAX- 38.0 49 0.0017 25.6 5.2 41 97-142 24-64 (159)
107 1u78_A TC3 transposase, transp 37.6 27 0.00092 26.1 3.5 41 97-142 5-45 (141)
108 2rn7_A IS629 ORFA; helix, all 37.6 32 0.0011 24.8 3.8 46 96-141 4-52 (108)
109 2r1j_L Repressor protein C2; p 36.6 13 0.00044 24.0 1.3 25 121-145 20-44 (68)
110 2ofy_A Putative XRE-family tra 36.3 40 0.0014 22.9 4.0 24 121-144 29-52 (86)
111 2eqr_A N-COR1, N-COR, nuclear 36.3 60 0.002 21.3 4.6 49 91-143 7-57 (61)
112 2lv7_A Calcium-binding protein 35.8 37 0.0013 24.4 3.8 47 95-141 26-79 (100)
113 3c3w_A Two component transcrip 35.7 20 0.00068 29.3 2.6 45 97-147 148-192 (225)
114 1iuf_A Centromere ABP1 protein 35.6 27 0.00093 27.1 3.2 48 93-143 6-60 (144)
115 1zug_A Phage 434 CRO protein; 35.0 14 0.00048 24.1 1.3 25 121-145 18-42 (71)
116 2q24_A Putative TETR family tr 35.0 20 0.00068 28.1 2.4 41 104-146 21-61 (194)
117 1xsv_A Hypothetical UPF0122 pr 34.5 26 0.00089 26.1 2.9 46 98-148 25-70 (113)
118 3bd1_A CRO protein; transcript 34.5 13 0.00046 25.2 1.1 25 121-145 13-37 (79)
119 2qko_A Possible transcriptiona 33.9 19 0.00065 28.8 2.1 48 99-147 28-76 (215)
120 1rp3_A RNA polymerase sigma fa 33.8 24 0.00083 28.8 2.8 45 98-147 187-231 (239)
121 3bs3_A Putative DNA-binding pr 33.7 15 0.00052 24.3 1.3 25 121-145 25-49 (76)
122 1tty_A Sigma-A, RNA polymerase 33.6 31 0.0011 24.1 3.0 49 98-147 18-66 (87)
123 3omt_A Uncharacterized protein 32.2 18 0.00061 24.0 1.4 24 121-144 23-46 (73)
124 1fi6_A EH domain protein REPS1 31.6 34 0.0012 23.9 3.0 44 98-141 2-50 (92)
125 1adr_A P22 C2 repressor; trans 31.4 18 0.0006 23.9 1.3 25 121-145 20-44 (76)
126 1r69_A Repressor protein CI; g 30.8 18 0.00063 23.3 1.3 25 121-145 16-40 (69)
127 2b5a_A C.BCLI; helix-turn-heli 30.6 18 0.00062 24.0 1.2 24 121-144 25-48 (77)
128 3kz3_A Repressor protein CI; f 30.6 20 0.00067 24.4 1.4 25 121-145 27-51 (80)
129 1l3l_A Transcriptional activat 30.5 37 0.0013 28.2 3.5 46 96-147 171-216 (234)
130 1or7_A Sigma-24, RNA polymeras 30.5 32 0.0011 27.2 3.0 45 98-147 140-184 (194)
131 2jpc_A SSRB; DNA binding prote 30.3 17 0.00058 23.2 1.0 39 103-147 3-41 (61)
132 3o9x_A Uncharacterized HTH-typ 30.0 30 0.001 26.0 2.6 42 97-145 69-110 (133)
133 3fiw_A Putative TETR-family tr 30.0 25 0.00084 28.7 2.2 54 93-147 19-73 (211)
134 2pmy_A RAS and EF-hand domain- 29.8 26 0.00089 24.2 2.0 46 96-141 18-68 (91)
135 2lfw_A PHYR sigma-like domain; 29.3 28 0.00096 27.0 2.3 46 97-147 92-137 (157)
136 2qwt_A Transcriptional regulat 28.7 36 0.0012 26.8 3.0 40 104-145 19-58 (196)
137 2hxi_A Putative transcriptiona 28.6 45 0.0015 27.8 3.7 52 94-146 24-76 (241)
138 2kpj_A SOS-response transcript 28.0 21 0.00072 25.1 1.2 26 120-145 23-48 (94)
139 1pdn_C Protein (PRD paired); p 28.0 45 0.0015 24.1 3.2 40 97-141 16-55 (128)
140 1y7y_A C.AHDI; helix-turn-heli 27.7 22 0.00075 23.3 1.2 24 121-144 28-51 (74)
141 2hxo_A Putative TETR-family tr 27.7 51 0.0018 27.3 3.9 53 93-146 10-63 (237)
142 1a04_A Nitrate/nitrite respons 27.6 38 0.0013 27.1 3.0 44 98-147 154-197 (215)
143 1c07_A Protein (epidermal grow 27.1 40 0.0014 23.7 2.7 43 99-141 4-51 (95)
144 3b7h_A Prophage LP1 protein 11 27.0 23 0.0008 23.5 1.3 24 121-144 22-45 (78)
145 2a6c_A Helix-turn-helix motif; 26.4 25 0.00086 24.1 1.4 24 121-144 33-56 (83)
146 1rzs_A Antirepressor, regulato 25.8 27 0.00092 22.8 1.4 20 121-140 12-31 (61)
147 3i5g_B Myosin regulatory light 25.6 99 0.0034 23.6 5.0 39 95-133 6-49 (153)
148 3bdn_A Lambda repressor; repre 25.5 36 0.0012 28.1 2.5 25 121-145 32-56 (236)
149 1k78_A Paired box protein PAX5 25.3 56 0.0019 24.8 3.5 40 97-141 31-70 (149)
150 2hin_A GP39, repressor protein 25.3 25 0.00085 24.2 1.2 25 122-146 13-37 (71)
151 3qp6_A CVIR transcriptional re 25.2 84 0.0029 26.8 4.9 46 97-148 196-241 (265)
152 1j9i_A GPNU1 DBD;, terminase s 25.2 30 0.001 23.0 1.5 22 121-142 4-25 (68)
153 3klo_A Transcriptional regulat 25.0 41 0.0014 27.2 2.7 44 98-147 159-202 (225)
154 2g7l_A TETR-family transcripti 24.5 57 0.002 27.2 3.6 54 93-147 13-67 (243)
155 3f6w_A XRE-family like protein 23.8 29 0.00098 23.5 1.3 24 121-144 29-52 (83)
156 2k9q_A Uncharacterized protein 23.8 28 0.00097 23.2 1.3 24 121-144 17-40 (77)
157 2ef8_A C.ECOT38IS, putative tr 23.7 29 0.00098 23.4 1.3 24 121-144 25-48 (84)
158 2wiu_B HTH-type transcriptiona 23.2 31 0.0011 23.5 1.4 25 121-145 27-51 (88)
159 2kvr_A Ubiquitin carboxyl-term 23.1 36 0.0012 26.3 1.8 23 122-144 72-94 (130)
160 3t76_A VANU, transcriptional r 22.5 28 0.00096 24.7 1.0 25 121-145 39-63 (88)
161 3clo_A Transcriptional regulat 22.4 58 0.002 27.5 3.3 46 97-148 196-241 (258)
162 1k78_A Paired box protein PAX5 22.2 1.4E+02 0.0046 22.6 5.2 44 96-142 88-141 (149)
163 2yus_A SWI/SNF-related matrix- 22.1 2E+02 0.0068 19.8 5.7 45 92-140 14-59 (79)
164 2ict_A Antitoxin HIGA; helix-t 22.1 31 0.001 24.1 1.2 24 121-144 23-46 (94)
165 1u78_A TC3 transposase, transp 21.5 1E+02 0.0034 22.7 4.2 44 98-145 60-105 (141)
166 1lmb_3 Protein (lambda repress 21.0 35 0.0012 23.5 1.3 24 121-144 32-55 (92)
167 3t72_q RNA polymerase sigma fa 20.9 72 0.0025 23.1 3.1 49 98-147 19-67 (99)
168 3s8q_A R-M controller protein; 20.2 37 0.0013 22.9 1.2 25 120-144 25-49 (82)
169 3szt_A QCSR, quorum-sensing co 20.1 81 0.0028 26.3 3.7 45 97-147 174-218 (237)
170 2rek_A Putative TETR-family tr 20.0 38 0.0013 26.5 1.5 40 104-145 22-61 (199)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.5e-22 Score=146.08 Aligned_cols=63 Identities=35% Similarity=0.432 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 87 KSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 87 ~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
...++.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++.||+|||||||+||||
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 345667889999999999999999999999999999999999999999999999999999944
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=1.5e-21 Score=144.39 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh----CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDE----THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.++.||.||.||.+|+.+||..|+. ++||+..+|++||..|||+++||+|||||||+|+|
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 4567889999999999999999999 99999999999999999999999999999999993
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=144.49 Aligned_cols=63 Identities=29% Similarity=0.306 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 87 KSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 87 ~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
....+.+|.||.||.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345667889999999999999999999999999999999999999999999999999999944
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=2.4e-21 Score=143.19 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh-----CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDE-----THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
...++||.||.||.+|+.+|| .|.. ++||+..+|++||..|||+++||||||||||+|+|
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 345678899999999999999 8999 99999999999999999999999999999999994
No 5
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=4.9e-21 Score=141.68 Aligned_cols=67 Identities=39% Similarity=0.565 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccchhhhhhhccCC
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVSTVTINNTLNP 160 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~~~~~~~~~~~ 160 (288)
.++.||.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+ |+.+....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~-----rk~~~~~~ 70 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC-----RQQQQQQQ 70 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHH-----HHTTCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHh-----hHHHHccC
Confidence 35678899999999999999999999999999999999999999999999999999999 55554433
No 6
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.83 E-value=3.9e-21 Score=141.17 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
..++.+|.||.||.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+|+.
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999999999999999999999999554
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=3.8e-21 Score=142.27 Aligned_cols=64 Identities=38% Similarity=0.575 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccchhhh
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVSTVT 153 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~~~~ 153 (288)
.+.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|||++.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 4567899999999999999999999999999999999999999999999999999999665433
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=5.2e-21 Score=137.98 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+.||.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 3456889999999999999999999999999999999999999999999999999999944
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-21 Score=142.22 Aligned_cols=63 Identities=24% Similarity=0.253 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 86 CKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 86 ~~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.....+.+|.||.||.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+|
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 73 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHh
Confidence 334567788999999999999999999999999999999999999999999999999999993
No 10
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.83 E-value=4.9e-21 Score=145.70 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
...+.||.||.||.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|||++
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 75 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQ 75 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhh
Confidence 345678899999999999999999999999999999999999999999999999999999554
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=139.73 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.+.||.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999943
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-21 Score=136.72 Aligned_cols=61 Identities=31% Similarity=0.311 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+.+|.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 4456889999999999999999999999999999999999999999999999999999944
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=6.6e-21 Score=134.15 Aligned_cols=59 Identities=27% Similarity=0.312 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 91 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
+.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 46789999999999999999999999999999999999999999999999999999943
No 14
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=1.4e-20 Score=138.20 Aligned_cols=62 Identities=32% Similarity=0.360 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.+++.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 34567888999999999999999999999999999999999999999999999999999944
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=8e-21 Score=136.93 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+.+|.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhh
Confidence 3456889999999999999999999999999999999999999999999999999999933
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=136.05 Aligned_cols=59 Identities=41% Similarity=0.547 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.+.+|.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~r 63 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWR 63 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccc
Confidence 34678999999999999999999999999999999999999999999999999999993
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=136.19 Aligned_cols=61 Identities=31% Similarity=0.394 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+.||.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 3456889999999999999999999999999999999999999999999999999999944
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=9.2e-21 Score=133.85 Aligned_cols=58 Identities=31% Similarity=0.340 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 91 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
+.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWK 59 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhh
Confidence 3578999999999999999999999999999999999999999999999999999993
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.81 E-value=1.8e-20 Score=134.41 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
+||.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 58 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 58 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHh
Confidence 478899999999999999999999999999999999999999999999999999993
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.81 E-value=1.4e-20 Score=132.03 Aligned_cols=57 Identities=37% Similarity=0.550 Sum_probs=52.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.||.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIK 59 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccc
Confidence 578999999999999999999999999999999999999999999999999999993
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=2.1e-20 Score=133.16 Aligned_cols=59 Identities=29% Similarity=0.336 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 91 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
+.+|.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhH
Confidence 46789999999999999999999999999999999999999999999999999999943
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.80 E-value=1.6e-20 Score=134.59 Aligned_cols=58 Identities=40% Similarity=0.539 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 91 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
+.+|.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~r 59 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 59 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHH
Confidence 4688999999999999999999999999999999999999999999999999999993
No 23
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-20 Score=135.75 Aligned_cols=62 Identities=47% Similarity=0.669 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..++.+|.||.||.+|+.+||..|..++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 34566889999999999999999999999999999999999999999999999999999943
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.80 E-value=2e-20 Score=138.68 Aligned_cols=63 Identities=49% Similarity=0.698 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 87 KSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 87 ~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
...++.+|.||.||.+|+.+||..|+.++||+..+|.+||..|||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 13 ALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp ----CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 345677889999999999999999999999999999999999999999999999999999944
No 25
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=3.6e-20 Score=133.53 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 91 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
+.++.|+.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhc
Confidence 456789999999999999999999999999999999999999999999999999999
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.80 E-value=2.8e-20 Score=135.20 Aligned_cols=61 Identities=26% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 64 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHH
Confidence 3456889999999999999999999999999999999999999999999999999999944
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=3e-20 Score=133.19 Aligned_cols=59 Identities=32% Similarity=0.385 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
.||.||.||.+|+.+||..|..++||+..+|++||..|||++.+|+|||||||+|+|++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999543
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=3.6e-20 Score=132.76 Aligned_cols=58 Identities=29% Similarity=0.392 Sum_probs=55.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
+||.||.||.+|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 59 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999943
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-20 Score=138.55 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhC----CCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDET----HYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++.+|.||.||.+|+.+||..|+.+ +||+..+|++||..|||++.||+|||||||+|+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~ 67 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHH
Confidence 45678899999999999999999999 999999999999999999999999999999999
No 30
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=3.3e-20 Score=128.75 Aligned_cols=56 Identities=36% Similarity=0.434 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
||.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 57899999999999999999999999999999999999999999999999999993
No 31
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.80 E-value=2.9e-20 Score=139.99 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.++.+|.||.||.+|+.+||..|+.++||+..+|++||..|||++++|+|||||||+|+|+
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 3456889999999999999999999999999999999999999999999999999999943
No 32
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-20 Score=134.29 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.+.|+.||.+|+.+||..|+.++||+..+|++||..|||++++|+|||||||+|+|+
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 446899999999999999999999999999999999999999999999999999944
No 33
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.79 E-value=3.7e-20 Score=129.83 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
++.+|.||.||.+|+.+||..|..++||+..++++||..|||++.||+|||||||+|+
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999999999999999999999999998
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=4.9e-20 Score=128.79 Aligned_cols=57 Identities=33% Similarity=0.402 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
||.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 578999999999999999999999999999999999999999999999999999943
No 35
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.79 E-value=3.9e-20 Score=137.16 Aligned_cols=60 Identities=28% Similarity=0.383 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
++.||.||.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+||
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 77 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhh
Confidence 346789999999999999999999999999999999999999999999999999999943
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.79 E-value=6e-20 Score=127.25 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
++|.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46789999999999999999999999999999999999999999999999999998
No 37
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=4.1e-20 Score=141.37 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
.....+|+||.||.+|+.+||..|+.++||+..+|++||..|||+++||+|||||||+|+|++
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 344567889999999999999999999999999999999999999999999999999999654
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.1e-19 Score=132.09 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 95 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
+|+.||.+|+.+||+.|..++||+..+|++||..+||+++||+|||||||+|+|
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~K 59 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHH
Confidence 456799999999999999999999999999999999999999999999999993
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.79 E-value=3.7e-20 Score=127.69 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
|.||.+|+.+||..|+.++||+..+|.+||..|||++++|+|||||||+|+||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 68999999999999999999999999999999999999999999999999943
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1.8e-19 Score=130.93 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDE-THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
++.||.||.+|+.+||..|+. ++||+..+|++||..|||++++|+|||||||+|+|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~r 59 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 59 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 568999999999999999995 99999999999999999999999999999999993
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=129.78 Aligned_cols=57 Identities=35% Similarity=0.478 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
||.||.||.+|+.+||..|+.++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKR 58 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhH
Confidence 678999999999999999999999999999999999999999999999999999943
No 42
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2e-19 Score=137.27 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcC---------------CChhhhcccccchhcccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG---------------LSEARVQNFSQVLNLLID 148 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~---------------l~~~~v~vWFqnrR~k~k 148 (288)
.++.||.|+.||.+|+.+||..|+.++||+..+|++||..|| |++.+|+|||||||+|+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~k 78 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK 78 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999 999999999999999994
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=131.14 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 94 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
++|+.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|+|
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~k 63 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVN 63 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHH
Confidence 4567799999999999999999999999999999999999999999999999993
No 44
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.78 E-value=8.3e-20 Score=127.64 Aligned_cols=55 Identities=47% Similarity=0.665 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 95 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 5899999999999999999999999999999999999999999999999999954
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.1e-19 Score=130.22 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDE-THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.++||.||.+|+.+||..|+. ++||+..+|++||..|||++++|+|||||||+|+|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~r 58 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHh
Confidence 467899999999999999996 99999999999999999999999999999999993
No 46
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.6e-19 Score=126.70 Aligned_cols=58 Identities=29% Similarity=0.405 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh-CCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDE-THYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
++.||.||.|+.+||..|+..|+. ++|||...|++||.+|||++++|||||||+|.-.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 457899999999999999999999 9999999999999999999999999999999876
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=138.59 Aligned_cols=59 Identities=32% Similarity=0.371 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.+.++.||.||.+|+.+||..|+.++||+..+|++||..|||+++||+|||||||+|+|
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 90 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQK 90 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHh
Confidence 45678899999999999999999999999999999999999999999999999999993
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=4.6e-19 Score=129.02 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.++.||.||.+|+.+||..|+.++||+..+|++||..|||++.+|+|||||||+|+|+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999943
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.8e-18 Score=129.91 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.||.+||.+||+.|..++||+..+|++||..|||+++||+|||||||+|||+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 7899999999999999999999999999999999999999999999999943
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=5e-19 Score=125.23 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 92 QRRSRTNFTLEQLNELERLF---DETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.++.|+.|+.+|+.+||..| ..++||+..++++||..|||++.||+|||||+|+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 47889999999999999999 89999999999999999999999999999999999943
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=126.79 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.++.++.|+.|+.+|+.+||..|.. ++||+..+|++||..+||++.||+|||||+|+|+|
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 66 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRIL 66 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcc
Confidence 3456788999999999999999987 99999999999999999999999999999999993
No 52
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.75 E-value=4.6e-19 Score=147.82 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.++||.||.||.+|+.+||..|..++||+..+|++||..|||+++||+|||||||+||||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 467889999999999999999999999999999999999999999999999999999954
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=129.28 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.||.+||.+||..|..++||+..+|++||..|||++++|+|||||||+|+|
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r 69 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRD 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHH
Confidence 489999999999999999999999999999999999999999999999993
No 54
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-19 Score=133.98 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhc---------------------CCChhhhcccccchhccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRL---------------------GLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l---------------------~l~~~~v~vWFqnrR~k~ 147 (288)
.++.||.||.|+..|+.+||+.|+.++||+..+|++||..| +|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678899999999999999999999999999999999999 799999999999999999
Q ss_pred cch
Q psy9565 148 DVS 150 (288)
Q Consensus 148 k~~ 150 (288)
|+.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.74 E-value=8.4e-19 Score=122.46 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 95 SRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
+|+.||.+|+.+||..|.. ++||+..++++||..+||++.||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 999999999999999999999999999999999944
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=4.4e-19 Score=128.48 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 93 RRSRTNFTLEQLNELERLF-DETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F-~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.+.|+.++.+|+.+||+.| +.++||+..+|++||..|||+++||+|||||||+|||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r 65 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCC
Confidence 4556678899999999999 9999999999999999999999999999999999994
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.74 E-value=1e-18 Score=131.20 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 93 RRSRTNFTLEQLNELERLF---DETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
||.|+.|+.+|+.+||..| ..++||+..+|++||..|||++.||+|||||||+|+|+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 62 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhc
Confidence 6789999999999999999 899999999999999999999999999999999999654
No 58
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.74 E-value=7e-19 Score=134.93 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHh------------------cC---CChhhhcccccchhcc
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQR------------------LG---LSEARVQNFSQVLNLL 146 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~------------------l~---l~~~~v~vWFqnrR~k 146 (288)
..++.||.||.||.+|+.+||..|+.++||+..+|++||.. || |++.+|+|||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45677899999999999999999999999999999999999 88 9999999999999999
Q ss_pred ccc
Q psy9565 147 IDV 149 (288)
Q Consensus 147 ~k~ 149 (288)
+|+
T Consensus 85 ~k~ 87 (99)
T 1lfb_A 85 EAF 87 (99)
T ss_dssp TSC
T ss_pred HHH
Confidence 944
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.74 E-value=9.6e-19 Score=143.68 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.+++||.||.||.+|+.+||..|..++||+..+|++||..|||+++||+|||||||+||||
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 4566788999999999999999999999999999999999999999999999999999954
No 60
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=1.9e-18 Score=125.42 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 93 RRSRTNFTLEQLNELERLF---DETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
||.|+.||.+|+.+||..| ..++||+..++.+||..+||++.||+|||||||+|+|+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999443
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=125.69 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.+.++.|+.|+.+|+.+||..|.. ++||+..+|++||..+||++.||+|||||+|+|+|
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k 66 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRIL 66 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhc
Confidence 356788999999999999999987 59999999999999999999999999999999993
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.73 E-value=1.1e-18 Score=145.90 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+++||+||.||.+|+.+||+.|..++||+..+|++||..|||+++||+|||||||+||||
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTB
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhh
Confidence 34567889999999999999999999999999999999999999999999999999999944
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=141.58 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.+++||.||.||.+|+.+||..|..++||+..+|++||..|||+++||+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567889999999999999999999999999999999999999999999999999999943
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3e-18 Score=122.84 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+|..|+.+||+.|+.++||+..+|.+||..|||+++||+|||||||+||||
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr 61 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999944
No 65
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.72 E-value=3.9e-18 Score=127.98 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.+++++|+.|+.+|+.+||..|.. ++||+..+|++||..+||++.||+|||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345667999999999999999999 99999999999999999999999999999999993
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.71 E-value=3.4e-18 Score=120.29 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 100 TLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 100 t~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
|.+||.+||..|..++||+..+|++||..|||+++||++||||||+|||
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~K 60 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQ 60 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhh
Confidence 7999999999999999999999999999999999999999999999993
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=3.5e-18 Score=120.23 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=45.0
Q ss_pred HHHHHHHHHHh-hhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 101 LEQLNELERLF-DETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 101 ~~Ql~~Le~~F-~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
..|+.+||+.| ..++||+..+|++||.+|||+++||+|||||||+|+|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 45799999999 6799999999999999999999999999999999993
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-17 Score=118.51 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..++.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+|.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~ 58 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQ 58 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCC
Confidence 456799999999999999999999999999999999999999999999998
No 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=1e-17 Score=124.63 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=52.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
+++|+.|+.+|+.+||..|.. ++||+..+|++||..+||++.||+|||||||+|+|+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk 62 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccc
Confidence 345677999999999999999 999999999999999999999999999999999944
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.69 E-value=8.4e-18 Score=139.40 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.++||.||.||.+|+.+||..|..++||+..+|++||..|||++++|+|||||||+||||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 456788999999999999999999999999999999999999999999999999999943
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.67 E-value=2.1e-17 Score=138.26 Aligned_cols=61 Identities=28% Similarity=0.298 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 89 SNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 89 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
..+.||.||.||.+|+.+||..|+.++||+..+|++||..|||++.||+|||||||+|+|+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~ 154 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLD 154 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccc
Confidence 4456889999999999999999999999999999999999999999999999999999943
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=1.1e-16 Score=136.95 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcC---------------------CChhhhcccccchhcc
Q psy9565 88 SSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG---------------------LSEARVQNFSQVLNLL 146 (288)
Q Consensus 88 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~---------------------l~~~~v~vWFqnrR~k 146 (288)
..++.||.||.|+..|+.+||+.|+.++||+..+|++||..|| |++.+|+|||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4466789999999999999999999999999999999999999 9999999999999999
Q ss_pred cc
Q psy9565 147 ID 148 (288)
Q Consensus 147 ~k 148 (288)
+|
T Consensus 191 ~k 192 (194)
T 1ic8_A 191 EA 192 (194)
T ss_dssp CC
T ss_pred hh
Confidence 84
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=7e-16 Score=110.01 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHhh---hCCCCCHHhHHHHHHhcCCChhhhcccccchhccccc
Q psy9565 98 NFTLEQLNELERLFD---ETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDV 149 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~ 149 (288)
.|+.+|+.+||..|. .++||+..+|++||..+||++.||++||||+|+|+|+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk 58 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQ 58 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhH
Confidence 699999999999999 9999999999999999999999999999999999944
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.54 E-value=2.5e-15 Score=129.82 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcC---------------------CChhhhcccccchh
Q psy9565 86 CKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG---------------------LSEARVQNFSQVLN 144 (288)
Q Consensus 86 ~~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~---------------------l~~~~v~vWFqnrR 144 (288)
....++.||.|+.|+..|+.+||+.|+.++||+..+|++||..+| |++.+|+|||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345677889999999999999999999999999999999999988 89999999999999
Q ss_pred ccc
Q psy9565 145 LLI 147 (288)
Q Consensus 145 ~k~ 147 (288)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 875
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=101.37 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 101 LEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 101 ~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+|+..||.+|..+++|+..++.+||..+||+.++|||||||||+..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 47899999999999999999999999999999999999999999754
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=103.02 Aligned_cols=54 Identities=22% Similarity=0.163 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHhhh---CCCCCHHhHHHHHHhcCCChhhhcccccchhccccch
Q psy9565 97 TNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVS 150 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k~~ 150 (288)
..|+.++..+|+..|.. ++||+..+|++||.++||++.||++||||+|.|+|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999999987 9999999999999999999999999999999999554
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=1.4e-13 Score=129.43 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
++.|+.|+.+|+.+||+.|+.++||+..+|++||.+|||+++||+|||||||+|+
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccccc
Confidence 4567899999999999999999999999999999999999999999999999998
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.80 E-value=1.2e-09 Score=67.69 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=16.5
Q ss_pred hhhcccccchhccccchhhh
Q psy9565 134 ARVQNFSQVLNLLIDVSTVT 153 (288)
Q Consensus 134 ~~v~vWFqnrR~k~k~~~~~ 153 (288)
+||+|||||||+||||....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999765333
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.44 E-value=0.011 Score=41.37 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccc
Q psy9565 105 NELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQV 142 (288)
Q Consensus 105 ~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqn 142 (288)
+.|+.+|...+.+....-..|+.+..|+-.||+.||-.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 68999999999999999999999999999999999955
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=81.33 E-value=1.7 Score=28.57 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
|..||.+....+...+... +.......++|..+|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4568998877775555433 32222367999999999999999964
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.02 E-value=1.8 Score=30.90 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=32.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
.++.+..|+.++....-..+... ....++|..+|++..+|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 34566789998865554555432 2366899999999999999974
No 82
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=76.43 E-value=1.9 Score=26.59 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcc
Q psy9565 99 FTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLL 146 (288)
Q Consensus 99 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k 146 (288)
|+.++...+...+... ....++|..+|++...|.-|+.....+
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 5556655555555433 346789999999999999998654443
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=75.22 E-value=0.054 Score=44.30 Aligned_cols=31 Identities=3% Similarity=-0.122 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhCCCCCHH
Q psy9565 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAF 120 (288)
Q Consensus 90 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~ 120 (288)
.+.||.||.|+.+|++.|+..|+.++||+..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4567899999999999999999999999753
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=74.35 E-value=4.4 Score=24.43 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQV 142 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqn 142 (288)
.++.++...+...+... + ...++|..||++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777775555555432 2 4678999999999999999753
No 85
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.21 E-value=4.4 Score=30.74 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcc
Q psy9565 95 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLL 146 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k 146 (288)
+|..||.++...+-..+..+... ...++|..+|++..+|.-|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~---~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDL---RKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTS---CHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCC---cHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 56789999987776666544433 23478999999999999998776543
No 86
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=70.04 E-value=3.9 Score=30.14 Aligned_cols=46 Identities=9% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
...+|..|.++|...++-. .-.++|..||+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3569999999998765422 348999999999999999987666555
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.88 E-value=4 Score=29.54 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..++..|.++|...|+-. .-.++|..||+++..|+.+..+-+.|.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 358999999998864332 348899999999999999987766666
No 88
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.61 E-value=5.7 Score=28.32 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++..|..+|...|.. ...-.++|..||++...|+.+...-|.|.
T Consensus 37 ~L~~~~r~vl~l~~~~-----g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR-----GWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4778888888775532 23568999999999999999987776666
No 89
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=61.14 E-value=4.4 Score=28.43 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
..++..|.++|...|+ ...-.++|..||+++..|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ------GLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHTT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4589999999987432 245789999999999999999877666663
No 90
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.13 E-value=5.8 Score=26.24 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++..+..+|...|... ..-.++|..+|++...|+.|...-+.+.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47888888888765332 4568999999999999999986655555
No 91
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.81 E-value=34 Score=23.63 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=34.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhc-CCChhhhcccccc
Q psy9565 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRL-GLSEARVQNFSQV 142 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~~v~vWFqn 142 (288)
+-.+..||.++-..|+........-....-..||..+ |=+..+|+.=|++
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 3345789999999999887664332345556789998 6777777755443
No 92
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=58.62 E-value=7.1 Score=26.10 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..++..|.++|...++ .+ .-.++|..+|++...|+.++..-+.|.
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4689999999987432 22 567899999999999999987655555
No 93
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.75 E-value=10 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 101 LEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 101 ~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
.++...+...|... + ...++|..||++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 56655555555432 2 567899999999999999874
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.63 E-value=11 Score=25.12 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+++.|..+|...|....+ ....-.++|..+|++...|+.+...-+.|.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4788888999888732111 123458899999999999999876666665
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.50 E-value=6.9 Score=26.65 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.++..|..+|...|+ ...-.++|..+|+++..|+.+..+-+.|.+
T Consensus 16 ~L~~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVA------GLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTT------TCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 367788888876432 234579999999999999999877666663
No 96
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=50.95 E-value=16 Score=26.08 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
|..||.++....-..+... ......++|..+|++..+|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHH
Confidence 3568888776554444322 023467899999999999999964
No 97
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=47.25 E-value=17 Score=25.90 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 95 SRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
....||..+.++|.-.++ .....++|..||+++..|+....+=+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~------G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK------GFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 445799999999987662 23578999999999999998877655554
No 98
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=46.28 E-value=12 Score=26.56 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..++..|..+|...|+- ..-.++|..||+++..|+.+..+-+.|.
T Consensus 28 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKG------YSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHHHTT------CCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45889999999875432 3346899999999999999987766666
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=42.80 E-value=16 Score=27.36 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+++.|..++...|... ..-.++|..+|++...|+.|...-|.+.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47888888888765433 3468999999999999999987777666
No 100
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=41.42 E-value=41 Score=23.14 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNF 139 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vW 139 (288)
+..+|.++...||+....-.--....-+.+|..+|=+..+|+.-
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~ 51 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTK 51 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHH
Confidence 34699999999999976443212222355888899888887743
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.69 E-value=20 Score=24.08 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+++.|..+|...|...-. ....-.++|..+|++...|+.|...-+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4788999999888742100 123457999999999999999876655555
No 102
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.49 E-value=20 Score=27.31 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++..|..+|. .| .....-.++|..||++...|+.+...-|.+.
T Consensus 109 ~L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 109 NFSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HSCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46666766666 32 2344678999999999999999987666666
No 103
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=39.42 E-value=17 Score=30.45 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
...+|..|.++|.-.++ ...-.++|..||+++..|+.+..|-+.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK------GKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHT------TCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 34699999999977543 23458999999999999999988776665
No 104
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=38.65 E-value=11 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.0
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 16 s~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 16 SQSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 457899999999999999998764
No 105
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=38.55 E-value=21 Score=23.99 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
..|+.+.+..+..... ....+||..+|++...|.-|-.+++.
T Consensus 9 ~~~~g~~lr~~R~~~g-------ltq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcC-------CCHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4789999888876553 34689999999999999999877653
No 106
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=38.03 E-value=49 Score=25.58 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQV 142 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqn 142 (288)
..|+.++...+-..+... ....++|..||++..+|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 468888877766666533 24568899999999999999853
No 107
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=37.62 E-value=27 Score=26.14 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQV 142 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqn 142 (288)
..++.++...+...+... ....++|..||++..+|.-|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-----~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-----VSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHc
Confidence 457888877776666533 24678999999999999999853
No 108
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=37.57 E-value=32 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHh-hhC-CCCCH-HhHHHHHHhcCCChhhhccccc
Q psy9565 96 RTNFTLEQLNELERLF-DET-HYPDA-FMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F-~~~-~yp~~-~~r~~La~~l~l~~~~v~vWFq 141 (288)
+..||.++....-..+ +.. .|.+. ....++|..+|++..+|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3468888875444433 322 23332 4567899999999999999964
No 109
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=36.63 E-value=13 Score=23.96 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=21.5
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC
Confidence 4678999999999999999987654
No 110
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=36.28 E-value=40 Score=22.93 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=21.1
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 557999999999999999988765
No 111
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.25 E-value=60 Score=21.25 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=32.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhc-CCChh-hhcccccch
Q psy9565 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRL-GLSEA-RVQNFSQVL 143 (288)
Q Consensus 91 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~-~v~vWFqnr 143 (288)
+.|+....+|.++...++..|.. |+.. -..||..| +-+.. .|+.|+.++
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~--~gk~--w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQ--HPKN--FGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHH--STTC--HHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHH--hCCC--HHHHHHHcCCCCHHHHHHHHHHhc
Confidence 34556689999999999999986 4543 34556666 34443 445666554
No 112
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=35.81 E-value=37 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHhhh-----CCCCCHHhHHHHHHhcC--CChhhhccccc
Q psy9565 95 SRTNFTLEQLNELERLFDE-----THYPDAFMREELSQRLG--LSEARVQNFSQ 141 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~La~~l~--l~~~~v~vWFq 141 (288)
....++.+|+.+|...|.. +-+.+..+-..+...+| +++..|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3457899999999999875 46788888777777776 56777877774
No 113
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=35.75 E-value=20 Score=29.34 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..+|..+.++|+-..+- ..+.+||..|+++++.|++...|=|.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 45899998888765543 4578999999999999999988877766
No 114
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=35.56 E-value=27 Score=27.07 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.0
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhCCCCCHHhHHHHHH----hc--CCChhhhcccccch
Q psy9565 93 RRSRTNFTLEQLNELERLF-DETHYPDAFMREELSQ----RL--GLSEARVQNFSQVL 143 (288)
Q Consensus 93 rr~Rt~ft~~Ql~~Le~~F-~~~~yp~~~~r~~La~----~l--~l~~~~v~vWFqnr 143 (288)
+++|..+|.+|...|-.++ +.+.-.. ..+||. ++ +++..+|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4678899999998888877 4554433 345666 66 78888999898663
No 115
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=35.00 E-value=14 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.8
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 18 sq~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 18 TQTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4678999999999999999988655
No 116
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=34.96 E-value=20 Score=28.13 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=34.2
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcc
Q psy9565 104 LNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLL 146 (288)
Q Consensus 104 l~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k 146 (288)
++.-...|...-| + ..-.+||+..|++...|-.+|.||..=
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 4455667988989 6 789999999999999999999997543
No 117
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.53 E-value=26 Score=26.07 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
.++..|..+|...|.. ...-.++|..+|+++..|+.+...-|.+.|
T Consensus 25 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE-----DYSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHTS-----CCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3677777777766432 235689999999999999999877666663
No 118
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=34.48 E-value=13 Score=25.23 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.9
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 4688999999999999999988763
No 119
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=33.86 E-value=19 Score=28.80 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=35.2
Q ss_pred CCHHH-HHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 99 FTLEQ-LNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 99 ft~~Q-l~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+.++ ++.....|...-|- ...-.+||+..|++...|-.+|.|+..=.
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGAR-GLTFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTT-TCCHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChh-hccHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 34443 34555668887775 45567899999999999999999975544
No 120
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.78 E-value=24 Score=28.80 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++..|..+|...|- ....-.++|..||++...|+.+...-|.+.
T Consensus 187 ~L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY-----EELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCHHHHHHHHHHHT-----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 477888888877763 234578999999999999999987666666
No 121
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.74 E-value=15 Score=24.34 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.5
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 25 s~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 25 TNRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4678999999999999999987653
No 122
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.63 E-value=31 Score=24.08 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++..|..+|...|....- ....-.++|..+|++...|+.|...-+.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4788888898887742100 124568899999999999999876655555
No 123
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=32.16 E-value=18 Score=24.00 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=20.9
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 467899999999999999998764
No 124
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.64 E-value=34 Score=23.88 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHhhh-----CCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 98 NFTLEQLNELERLFDE-----THYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
.++.+|...++..|.. +-+.+..+-..+-..+|+++..++.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3688999999999875 3456667767777778999887776654
No 125
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.41 E-value=18 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=21.6
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4678999999999999999987654
No 126
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=30.77 E-value=18 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.5
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 16 sq~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 16 NQAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3678999999999999999887654
No 127
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=30.60 E-value=18 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 467899999999999999988764
No 128
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=30.56 E-value=20 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.6
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4578999999999999999987654
No 129
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=30.54 E-value=37 Score=28.25 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
...+|..|+++|.-.++ ...-.|+|..||+++..|+...+|-+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV------GKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHTT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 45699999999976432 33568999999999999999988766665
No 130
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.46 E-value=32 Score=27.16 Aligned_cols=45 Identities=9% Similarity=-0.047 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.++..|..+|.-.|-. ...-.++|..||+++..|+.+...-|.+.
T Consensus 140 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 140 SLPEDLRMAITLRELD-----GLSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HSCHHHHHHHHHHHTT-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3566666777655432 23468999999999999999987766666
No 131
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.32 E-value=17 Score=23.22 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 103 QLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 103 Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
|.++|...++- ..-.++|..||+++..|+.+..+-+.|.
T Consensus 3 e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKLIDEG------YTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHHHTS------CCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45566553332 2347899999999999999987766665
No 132
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=30.02 E-value=30 Score=26.04 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
-.++.++|..|.+... ....+||..+|++...|.-|-.+++.
T Consensus 69 ~~~~~~~l~~~R~~~g-------lsq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKLS-------LTQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TTCCHHHHHHHHHHTT-------CCHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred cCCCHHHHHHHHHHcC-------CCHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 3466666666655442 34578999999999999999887653
No 133
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=29.97 E-value=25 Score=28.73 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=35.8
Q ss_pred CCCCCCCCHHHHH-HHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 93 RRSRTNFTLEQLN-ELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 93 rr~Rt~ft~~Ql~-~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
++.|...+.+++. .....|...-|- .....+||..+|++...|-.+|.||..=.
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~L~ 73 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRDLL 73 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 3445556766643 445557776654 44567899999999999999999975443
No 134
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=29.78 E-value=26 Score=24.24 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHhhh-----CCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 96 RTNFTLEQLNELERLFDE-----THYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
-..++.+++..|+..|.. +-+.+..+-..+...+|+++..|+.+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 356889999999999864 4567777777778888999988888875
No 135
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=29.26 E-value=28 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..++..|..+|.-. |.....-.|+|..||+++..|+.+...-|.+.
T Consensus 92 ~~Lp~~~r~vl~L~-----~~~g~s~~EIA~~lgis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 92 ARMTPLSRQALLLT-----AMEGFSPEDAAYLIEVDTSEVETLVTEALAEI 137 (157)
T ss_dssp TTSCTTHHHHHTTT-----SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH-----HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34677777766543 33445678999999999999999987666655
No 136
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=28.70 E-value=36 Score=26.78 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=33.0
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhc
Q psy9565 104 LNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 104 l~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
+..-...|...-| . ..-.+||+..|++...|-.+|.||..
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 3345566888888 5 68889999999999999999999754
No 137
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=28.65 E-value=45 Score=27.82 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHH-HHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcc
Q psy9565 94 RSRTNFTLEQLN-ELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLL 146 (288)
Q Consensus 94 r~Rt~ft~~Ql~-~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k 146 (288)
+.|...+.+++. .-...|...-|- .....+||+.+|++...|-.+|.||..=
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~L 76 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAE-TFSVRKLAASLGTDSSSLYRHFRNKTEL 76 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCC-CCCHHHHHHHTTSCHHHHHHHTSSHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCcCHHHHHHHcCCHHHH
Confidence 344556777643 445557766654 4456678999999999999999997544
No 138
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.99 E-value=21 Score=25.12 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=22.1
Q ss_pred HhHHHHHHhcCCChhhhcccccchhc
Q psy9565 120 FMREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 120 ~~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
....+||..+|++...|.-|..+++.
T Consensus 23 lsq~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 23 KTQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHhCCCC
Confidence 34688999999999999999987654
No 139
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=27.98 E-value=45 Score=24.14 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
..|+.++...+-..+... ....++|..||++...|.-|+.
T Consensus 16 ~~~s~~~r~~i~~~~~~g-----~s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG-----IRPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHH
No 140
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=27.74 E-value=22 Score=23.29 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.0
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 468899999999999999988764
No 141
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=27.72 E-value=51 Score=27.31 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHH-HHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcc
Q psy9565 93 RRSRTNFTLEQLN-ELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLL 146 (288)
Q Consensus 93 rr~Rt~ft~~Ql~-~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k 146 (288)
++.+...+.+++. .....|...-|- .....+||+.+|++...|-..|.||..=
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~hF~~K~~L 63 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGER-GLTFRALAERLATGPGAIYWHITGKAEL 63 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTT-TCCHHHHHHHHTSCGGGGGGTCCCHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHCCChHHHHHhcCCHHHH
Confidence 3444556777643 445557777765 4456678999999999999999997544
No 142
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=27.60 E-value=38 Score=27.10 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+|..+.++|+-..+-. .+.+||..++++++.|++...|=|.|.
T Consensus 154 ~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 154 QLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp GSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 58999998887665432 578999999999999999888777776
No 143
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=27.06 E-value=40 Score=23.68 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhhh-----CCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 99 FTLEQLNELERLFDE-----THYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 99 ft~~Ql~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
++.+|...|+..|.. +-|.+..+-..+-..+|+++..|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 577888999999854 4567777777777788999888876664
No 144
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=26.98 E-value=23 Score=23.47 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.4
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 22 sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 22 TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 467899999999999999998876
No 145
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.39 E-value=25 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.6
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||+.+|++...|.-|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 468899999999999999998876
No 146
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=25.80 E-value=27 Score=22.77 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=18.4
Q ss_pred hHHHHHHhcCCChhhhcccc
Q psy9565 121 MREELSQRLGLSEARVQNFS 140 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWF 140 (288)
...+||+.||++...|--|+
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 46889999999999999998
No 147
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=25.63 E-value=99 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHhhh-----CCCCCHHhHHHHHHhcCCCh
Q psy9565 95 SRTNFTLEQLNELERLFDE-----THYPDAFMREELSQRLGLSE 133 (288)
Q Consensus 95 ~Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 133 (288)
+|..+|.+|+.+|...|.. +-+.+..+-..+.+.||+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 3567999999999999975 45778877777777777654
No 148
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=25.48 E-value=36 Score=28.14 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.6
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||+.+|++...|.-|..+++.
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGINA 56 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 5689999999999999999987653
No 149
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.30 E-value=56 Score=24.84 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhccccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFq 141 (288)
..|+.++...+-..+.. . ....++|..+|++..+|.-|+.
T Consensus 31 ~~~s~e~r~~iv~~~~~-G----~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-G----VRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-T----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-C----CCHHHHHHHHCcCHHHHHHHHH
Confidence 35888887766666643 2 2457899999999999999974
No 150
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.27 E-value=25 Score=24.19 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHhcCCChhhhcccccchhcc
Q psy9565 122 REELSQRLGLSEARVQNFSQVLNLL 146 (288)
Q Consensus 122 r~~La~~l~l~~~~v~vWFqnrR~k 146 (288)
..+||+.||++...|--|..++..-
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 7899999999999999998664433
No 151
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=25.18 E-value=84 Score=26.81 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
..+|..|+++|.-..+ ...-.|+|..||+++..|+....|=+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~------G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR------GKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 5789999999977643 334689999999999999999888777763
No 152
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=25.17 E-value=30 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.7
Q ss_pred hHHHHHHhcCCChhhhcccccc
Q psy9565 121 MREELSQRLGLSEARVQNFSQV 142 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqn 142 (288)
...++|..||++...|+-|-.+
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 3568999999999999999654
No 153
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=24.97 E-value=41 Score=27.24 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+|..+.+.|+...+ .....++|..|+++++.|++...+=|.|.
T Consensus 159 ~Lt~rE~~vL~~l~~------g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 159 KLTKREQQIIKLLGS------GASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TSCHHHHHHHHHHTT------TCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHc------CCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 488888888877543 24678999999999999999888777776
No 154
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.50 E-value=57 Score=27.19 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHH-HHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 93 RRSRTNFTLEQLN-ELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 93 rr~Rt~ft~~Ql~-~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
|..|...+.+++. .-...|...-|- .....+||+++|++...|-.+|.||..=.
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~G~~-~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll 67 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAEGLE-KVTMRRLAQELDTGPASLYVYVANTAELH 67 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHCSS-SCCHHHHHHHTTSCHHHHTTTCCSHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHhcCch-hcCHHHHHHHHCCChhHHHHHcCCHHHHH
Confidence 3345566777643 445557777764 44567899999999999999999975443
No 155
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.80 E-value=29 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.9
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|-.+++
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 457899999999999999988764
No 156
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.79 E-value=28 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.8
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 17 sq~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTCCS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 457899999999999999988764
No 157
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=23.68 E-value=29 Score=23.38 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.1
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 468899999999999999988764
No 158
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=23.20 E-value=31 Score=23.48 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.5
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++.
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4688999999999999999987543
No 159
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=23.08 E-value=36 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.5
Q ss_pred HHHHHHhcCCChhhhcccccchh
Q psy9565 122 REELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 122 r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 36689999999999999987655
No 160
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.46 E-value=28 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.9
Q ss_pred hHHHHHHhcCCChhhhcccccchhc
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
...+||..+|++...|.-|..+++-
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 5688999999999999999988653
No 161
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.40 E-value=58 Score=27.51 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhcccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLID 148 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~k 148 (288)
..++..|.++|.-.|+ ...-.|+|..||+++..|++...+-|.|.|
T Consensus 196 ~~L~~~erevl~L~~~------G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCIRK------GLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHHHT------TCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 5689999999987542 234688999999999999999887777763
No 162
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.18 E-value=1.4e+02 Score=22.55 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhc--------C--CChhhhcccccc
Q psy9565 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRL--------G--LSEARVQNFSQV 142 (288)
Q Consensus 96 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l--------~--l~~~~v~vWFqn 142 (288)
...++.++...+...+..++..+.. +|+..| | ++...|.-|+..
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~---~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAW---EIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHH---HHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHH---HHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 3467888888888888776554443 344444 5 788888888754
No 163
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=22.14 E-value=2e+02 Score=19.84 Aligned_cols=45 Identities=9% Similarity=0.004 Sum_probs=30.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcC-CChhhhcccc
Q psy9565 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG-LSEARVQNFS 140 (288)
Q Consensus 92 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~-l~~~~v~vWF 140 (288)
....+..||.++-..|....+.. . ..-..+|..++ =+..||+.=|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~--G--~~W~~IA~~v~~RT~~qcr~r~ 59 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMY--K--DDWNKVSEHVGSRTQDECILHF 59 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHS--S--SCHHHHHHHHSSCCHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHHHHh--C--CCHHHHHHHcCCCCHHHHHHHH
Confidence 34456789999999998887664 3 34566788774 5556655433
No 164
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=22.07 E-value=31 Score=24.11 Aligned_cols=24 Identities=4% Similarity=0.079 Sum_probs=21.1
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 468899999999999999998764
No 165
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.50 E-value=1e+02 Score=22.74 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcC--CChhhhcccccchhc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLG--LSEARVQNFSQVLNL 145 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~--l~~~~v~vWFqnrR~ 145 (288)
.++.++...+... ..++..+ -.+|+..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s---~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKT---ARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCC---HHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCC---HHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4788888777666 3333322 357888888 789999999876544
No 166
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=20.96 E-value=35 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=20.9
Q ss_pred hHHHHHHhcCCChhhhcccccchh
Q psy9565 121 MREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 121 ~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
...+||..+|++...|.-|..+++
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 468899999999999999988754
No 167
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.92 E-value=72 Score=23.13 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 98 NFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 98 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
.+++.|..++...|....+ ....-.++|..+|++...|+.+...-+.+.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4677788888877743211 234568999999999999998865555555
No 168
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.19 E-value=37 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=21.2
Q ss_pred HhHHHHHHhcCCChhhhcccccchh
Q psy9565 120 FMREELSQRLGLSEARVQNFSQVLN 144 (288)
Q Consensus 120 ~~r~~La~~l~l~~~~v~vWFqnrR 144 (288)
....+||..+|++...|.-|-.+++
T Consensus 25 lsq~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 25 MTQEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCHHHHHHHhCcCHHHHHHHHCCCC
Confidence 3467899999999999999987763
No 169
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=20.13 E-value=81 Score=26.26 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhccc
Q psy9565 97 TNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLI 147 (288)
Q Consensus 97 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~k~ 147 (288)
..+|+.|+++|.-..+ ...-.++|..||+++..|+.-..|=+.|.
T Consensus 174 ~~Lt~re~~vl~~~~~------G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 174 VRLTARETEMLKWTAV------GKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp CCCCHHHHHHHHHHHT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 4567777777755432 23468899999999999998877766555
No 170
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.04 E-value=38 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=33.3
Q ss_pred HHHHHHHhhhCCCCCHHhHHHHHHhcCCChhhhcccccchhc
Q psy9565 104 LNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNL 145 (288)
Q Consensus 104 l~~Le~~F~~~~yp~~~~r~~La~~l~l~~~~v~vWFqnrR~ 145 (288)
++.....|...-| . ..-.+||+..|++...|-.+|.||-.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 61 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWG 61 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHH
Confidence 3455566988999 5 58899999999999999999999754
Done!