RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9565
(288 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 71.0 bits (174), Expect = 1e-16
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 81 SPISSCKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFS 140
+P ++ + R+ R +T Q ELE+ F Y R E+++ L L+E +V+ +
Sbjct: 2 NPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWF 61
Query: 141 Q 141
Q
Sbjct: 62 Q 62
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 69.0 bits (169), Expect = 4e-16
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+R+RT+FT EQ+ LE+ F+ THYPD F RE L+ ++ L EAR+Q +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFS 50
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 66.8 bits (163), Expect = 2e-15
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+ + F+ +Q ELE+ F+ Y R+ L++ L LSE +V+ + Q
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQ 49
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 65.2 bits (159), Expect = 1e-14
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
K R RT +QL+ L + PDA M+E+L + GLS ++ + Q
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQ 52
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 65.2 bits (159), Expect = 1e-14
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R +T Q ELE+ F Y R E++ L L+E +++ + Q
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQ 46
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 64.1 bits (156), Expect = 2e-14
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R+ R ++ QL ELER + + R ++S LSE ++ + Q
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQ 50
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 64.5 bits (157), Expect = 2e-14
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
KQRRSRT F+ QL+ELER F+ T YPD + REEL+QR L+EAR+Q + Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQ 51
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 64.2 bits (156), Expect = 5e-14
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 73 HISRHLSLSPISSCKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLS 132
+ R+ + S RTNFT QL ELE+ F Y R E++ L L+
Sbjct: 8 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 67
Query: 133 EARVQNFSQ 141
E +V+ + Q
Sbjct: 68 ETQVKIWFQ 76
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 62.7 bits (152), Expect = 8e-14
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
QRR RT+FT +QL +LE F YPD REE++ L+EARV+ + +
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFK 50
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 62.2 bits (151), Expect = 9e-14
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R FT Q L +F E P ++ +SQ+LGL + V NF
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFM 47
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 60.7 bits (147), Expect = 4e-13
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R+ RT FT QL LER F + Y R E S L L+E +V+ + Q
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQ 49
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 60.7 bits (147), Expect = 4e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R RT FT +QL LE+ F + +Y R EL+ +L L E+ ++ + Q
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQ 48
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 59.5 bits (144), Expect = 1e-12
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
R RT F+ EQL L+R F+E Y R++LS LGL+EA+++ + Q
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQ 48
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 59.5 bits (144), Expect = 1e-12
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+ RT ++ + LER F E P + +++ L L + V+ +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFC 48
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 58.8 bits (142), Expect = 2e-12
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 92 QRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+R+ R F+ Q+ ELER F + Y A RE L+ + L+ +V+ + Q
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 51
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 58.9 bits (142), Expect = 4e-12
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 84 SSCKSSNKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+S NK+R+ R FT Q ELER F + Y A RE L+ + L+ +V+ + Q
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQ 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 57.7 bits (139), Expect = 8e-12
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 93 RRSRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQ 141
RR R NF + L F YP +EEL+++ G++ ++V N+
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFG 53
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 57.3 bits (138), Expect = 9e-12
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
RR+RT FT Q+ ELE+ F + Y A +LS +L L A+V+ + +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFK 50
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 56.8 bits (137), Expect = 9e-12
Identities = 7/46 (15%), Positives = 26/46 (56%)
Query: 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+++ + + LE++F ++ +EE++++ G++ +V+ +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFI 46
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 57.1 bits (138), Expect = 1e-11
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 93 RRSRTNFTLEQLNELERLFDETH---YPDAFMREELSQRLGLSEARVQNFSQ 141
+ R N + + YP +++++ + L+ +V N+
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFI 54
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 57.4 bits (138), Expect = 1e-11
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREEL---------------SQRLGLSEARVQ 137
R SR + E L +E F+E YPD REE+ S ++ +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 138 N 138
N
Sbjct: 61 N 61
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 4e-11
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
++R RT+ LE +F + P ++ +LGL + V+ +
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFC 57
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 54.6 bits (131), Expect = 1e-10
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 93 RRSRTNFTLEQLNELERLFDET-HYPDAFMREELSQRLGLSEARVQNFSQ 141
T +Q+ LE F++ +PD ++ GL+E + Q + +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFK 51
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 53.9 bits (129), Expect = 2e-10
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 81 SPISSCKSSNKQRRSRTNFTLEQLNELERLFDE----THYPDAFMREELSQRLGLSEARV 136
S + S +R RT FT EQ ++ + D E+ G+ +
Sbjct: 6 SGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65
Query: 137 QNFSQ 141
+ +
Sbjct: 66 KIWMH 70
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 52.9 bits (127), Expect = 3e-10
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 93 RRSRTNFTLEQLNELERLFDE---THYPDAFMREELSQRLGLSEARVQNFSQ 141
R R FT E + LE F + Y D E L + LS +++N+
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVS 50
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 52.8 bits (126), Expect = 4e-10
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 88 SSNKQRRSRTNFTLEQLNELERLFDET-HYPDAFMREELSQRLGLSEARVQNFSQ 141
S + RSRT +LE L L+ + YPD LS +L L + + F Q
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQ 57
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 51.7 bits (124), Expect = 7e-10
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 94 RSRTNFTLEQLNELERLFD-ETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+ +E + LE++F T YPD + LS++L S ++Q + +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFR 51
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 51.9 bits (124), Expect = 7e-10
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
RT+ LE+ F E P + ++++L + + ++ +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFS 47
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 49.7 bits (119), Expect = 3e-09
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 100 TLEQLNELERLFDE-THYPDAFMREELSQRLGLSEARVQNFSQ 141
T + LE++F T +PD E LS++L +Q + +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFR 43
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 48.2 bits (114), Expect = 2e-08
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 96 RTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQVLNLLIDVSTVT 153
R + L + ++ P RE L + +E + S + + VT
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVT 58
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.0 bits (103), Expect = 6e-07
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 93 RRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
S T EQL L+ F + + ++L Q GL + +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFG 52
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 39.7 bits (92), Expect = 3e-05
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQNFSQ 141
+ + T EQL L+ F + L + L+ + +
Sbjct: 2 DFTPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFT 53
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 71
Score = 26.3 bits (58), Expect = 1.1
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQN 138
++ + + +L E E+L + + + +E+++ L S +RV
Sbjct: 8 KRELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQ 56
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 27.4 bits (59), Expect = 1.4
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 97 TNFTLEQLNELERLFDE 113
++F +++ L + F +
Sbjct: 8 SHFDADEIKRLGKRFKK 24
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes
takasagoensis) [TaxId: 62960]}
Length = 433
Score = 27.7 bits (61), Expect = 2.1
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 13/106 (12%)
Query: 173 TPLEPCRVAPYVNVPRLPTLPFSASTAAA---FSAFDPTLLSAAHQYAAAAATVAALGNA 229
T P +A+ AAA F D T ++ A + N
Sbjct: 134 TMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTY---SNNLLTHARQLFDFANN 190
Query: 230 PNG----SIFSAASQYPSFSLAT---LAALHQDRLLSKNSSIADLR 268
G SI A + Y S AA R + N+ +
Sbjct: 191 YRGKYSDSITDARNFYASADYRDELVWAAAWLYRATNDNTYLNTAE 236
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
(Aplysia californica), twk43 [TaxId: 6500]}
Length = 352
Score = 26.9 bits (59), Expect = 3.1
Identities = 11/68 (16%), Positives = 24/68 (35%)
Query: 27 DDSNRLPSSESSRHLYFTDSNSDLKVNNENECDDSNRLPSSESSRHHISRHLSLSPISSC 86
+ RL ++ H + +S+L + + R E + ++ I++
Sbjct: 270 EPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANF 329
Query: 87 KSSNKQRR 94
S K R
Sbjct: 330 SSLRKHRP 337
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 26.4 bits (57), Expect = 3.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 97 TNFTLEQLNELERLF---DETHYPDAFM-REELSQRL 129
T F++ ++ L LF D + +EE L
Sbjct: 9 TVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLAL 45
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Length = 181
Score = 26.3 bits (57), Expect = 3.3
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 130
+ T+FT ++ E + F EE + G
Sbjct: 10 QDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYG 49
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli
[TaxId: 562]}
Length = 68
Score = 24.6 bits (54), Expect = 3.9
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 90 NKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARV 136
+++ R T+E L E R+ D EE++ + V
Sbjct: 5 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 51
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 26.2 bits (56), Expect = 5.0
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 193 PFSASTAAAFSAFDPTLLSAAHQYAAAAATVAALGNAPNGS 233
P A AA T ++A +Y A A L N P G+
Sbjct: 228 PHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGT 268
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 25.2 bits (54), Expect = 7.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 91 KQRRSRTNFTLEQLNELERLFDETHYPDAFM-REELSQRLGL 131
+Q ++TNFT +L L R F P + E Q
Sbjct: 2 EQLEAQTNFTKRELQVLYRGFKNE-CPSGVVNEETFKQIYAQ 42
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Length = 201
Score = 25.2 bits (54), Expect = 8.0
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 94 RSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLG 130
+ T FT E+L+ + F + R+E
Sbjct: 17 QLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYS 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.123 0.336
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 919,138
Number of extensions: 38932
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 47
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)