BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9567
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 23 VNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSG 81
+NFTW++ G +Y+Y F L+S + I+ P+V++ G +P V + C G + G
Sbjct: 56 MNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDG 115
Query: 82 IASFTIGLLIESRKGKPLPGTPLRLKLRKECAERMC 117
+A+F + +++ + +G + TP K C + C
Sbjct: 116 VAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAEC 151
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 23 VNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSG 81
+NFTW++ G +Y+Y F L+S + I+ P+V++ G +P V + C G + G
Sbjct: 56 MNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDG 115
Query: 82 IASFTIGLLIESRKGKPLPGTPLRLKLRKECAERMC 117
+A+F + +++ + +G + TP K C + C
Sbjct: 116 VAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAEC 151
>pdb|2D3J|A Chain A, Nmr Structure Of The Wif Domain From Human Wif-1
Length = 157
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 23 VNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSG 81
+NFTW++ G +Y+Y F L+S ++ I+ P+V++ G +P + V + C G + G
Sbjct: 63 MNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDG 122
Query: 82 IASFTIGLLIESRKGKPLPGTPLRLKLRKEC 112
+A+F + +++ + +G + TP K C
Sbjct: 123 VAAFEVDVIVMNSEGNTILQTPQNAIFFKTC 153
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 23 VNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSG 81
+NFTW++ G +Y+Y F L+S ++ I+ P+V++ G +P + V + C G + G
Sbjct: 56 MNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDG 115
Query: 82 IASFTIGLLIESRKGKPLPGTPLRLKLRKECAERMC 117
+A+F + +++ + +G + TP K C + C
Sbjct: 116 VAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAEC 151
>pdb|2YGN|A Chain A, Wif Domain Of Human Wnt Inhibitory Factor 1 In Complex
With 1,2-Dipalmitoylphosphatidylcholine
Length = 156
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 23 VNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSG 81
+NFTW++ G +Y+Y F L+S + I+ P+V++ G +P V + C G + G
Sbjct: 56 MNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDG 115
Query: 82 IASFTIGLLIESRKGKPLPGTPLRLKLRKEC 112
+A+F + +++ + +G + TP K C
Sbjct: 116 VAAFEVDVIVMNSEGNTILXTPQNAIFFKTC 146
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 14 LRRCTEMGYVNFTWKSGMKKYYYNFDRLQSFNE-NILEPPSVSIKTTGRIPRRPKVFSIQ 72
L T++ V FT S M++YYY DR QS + + L PP + + I K ++ Q
Sbjct: 143 LEYTTDIPAV-FTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILN--KYYATQ 199
Query: 73 LKCSGNRSG 81
+ + N SG
Sbjct: 200 DQFNENNSG 208
>pdb|3T4N|B Chain B, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|B Chain B, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|B Chain B, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 113
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 25 FTWKSGMKKYYYNFDRLQSFNE-NILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSG 81
FT S M++YYY DR QS + + L PP + + I K ++ Q + + N SG
Sbjct: 11 FTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPPQLENVILN--KYYATQDQFNENNSG 66
>pdb|1A8Z|A Chain A, Structure Determination Of A 16.8kda Copper Protein
Rusticyanin At 2.1a Resolution Using Anomalous
Scattering Data With Direct Methods
Length = 153
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 19 EMGYVNFTWKSGMKKYYY 36
+ GY NFTW YYY
Sbjct: 117 KFGYTNFTWHPTAGTYYY 134
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 19 EMGYVNFTWKSGMKKYYY 36
+ GY NFTW YYY
Sbjct: 118 KFGYTNFTWHPTAGTYYY 135
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 19 EMGYVNFTWKSGMKKYYY 36
+ GY NFTW YYY
Sbjct: 119 KFGYTNFTWHPTAGTYYY 136
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 19 EMGYVNFTWKSGMKKYYY 36
+ GY NFTW YYY
Sbjct: 119 KFGYTNFTWHPTAGTYYY 136
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 19 EMGYVNFTWKSGMKKYYY 36
+ GY NFTW YYY
Sbjct: 119 KFGYTNFTWHPTAGTYYY 136
>pdb|1KU9|A Chain A, X-Ray Structure Of A Methanococcus Jannaschii
Dna-Binding Protein: Implications For Antibiotic
Resistance In Staphylococcus Aureus
pdb|1KU9|B Chain B, X-Ray Structure Of A Methanococcus Jannaschii
Dna-Binding Protein: Implications For Antibiotic
Resistance In Staphylococcus Aureus
Length = 152
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 14 LRRCTEMGYVNFTWKSGMKKYYY 36
L++ E+G+V W G +K YY
Sbjct: 62 LKKLEELGFVRKVWIKGERKNYY 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,583,537
Number of Sequences: 62578
Number of extensions: 131354
Number of successful extensions: 341
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 14
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)