Query psy9567
Match_columns 122
No_of_seqs 75 out of 77
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02019 WIF: WIF domain; Int 100.0 1.4E-45 3.1E-50 272.9 9.3 105 6-112 27-132 (132)
2 smart00469 WIF Wnt-inhibitory 100.0 1.2E-41 2.7E-46 253.2 11.7 106 6-114 30-136 (136)
3 KOG1024|consensus 100.0 8.2E-34 1.8E-38 242.9 10.1 107 6-116 50-156 (563)
4 PF00337 Gal-bind_lectin: Gala 40.2 31 0.00066 24.2 2.7 41 51-93 11-52 (133)
5 PF13573 SprB: SprB repeat 36.4 43 0.00094 19.2 2.5 17 71-87 5-21 (37)
6 cd00070 GLECT Galectin/galacto 35.1 42 0.00092 23.5 2.7 37 51-92 11-47 (127)
7 PF13927 Ig_3: Immunoglobulin 28.9 32 0.00069 20.2 1.1 26 51-79 1-26 (75)
8 PF04526 DUF568: Protein of un 24.8 70 0.0015 22.7 2.3 19 13-31 58-76 (101)
9 PF00927 Transglut_C: Transglu 24.2 2.2E+02 0.0047 19.1 4.7 41 52-93 1-42 (107)
10 cd06480 ACD_HspB8_like Alpha-c 24.1 96 0.0021 21.4 2.9 35 58-92 6-43 (91)
11 PF05100 Phage_tail_L: Phage m 23.7 1E+02 0.0022 24.8 3.3 36 24-59 20-56 (206)
12 PRK10040 hypothetical protein; 20.9 39 0.00084 21.6 0.3 18 72-89 18-35 (52)
No 1
>PF02019 WIF: WIF domain; InterPro: IPR003306 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. This entry represents the WIF domain, and is found in the RYK tyrosine kinase receptors and WIF the Wnt-inhibitory-factor. The domain is extracellular and contains two conserved cysteines that may form a disulphide bridge. This domain is Wnt binding in WIF, and it has been suggested that RYK may also bind to Wnt [].; GO: 0004713 protein tyrosine kinase activity; PDB: 2YGP_A 2YGO_A 2YGN_A 2D3J_A 2YGQ_A.
Probab=100.00 E-value=1.4e-45 Score=272.89 Aligned_cols=105 Identities=45% Similarity=0.749 Sum_probs=81.5
Q ss_pred eeeeeeceeeccCCCCeEEEEEeeCC-eeEEeeeeEeeecCCCcCCCCeecccCCCcCCCCceEEEEEeeeCCCCCeEEE
Q psy9567 6 TVVSEKMFLRRCTEMGYVNFTWKSGM-KKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSGIAS 84 (122)
Q Consensus 6 ~~yA~~f~~~VPs~i~~l~FTW~s~~-k~y~Y~~~~l~s~d~~iL~~P~lnIs~~G~VP~~~~~F~V~LpCtG~~sgea~ 84 (122)
.+||++|.+||||+|++|+|||+|++ ++|+|+|+.++|+|++||++|++|||.+|+||+++|+|+|+|+|||+++|||+
T Consensus 27 n~yal~f~~~VPs~i~~l~FtW~s~~~~~~~Y~~~~l~s~d~~~l~~P~lnIs~~G~VP~~~~~F~V~L~CtG~~~g~a~ 106 (132)
T PF02019_consen 27 NPYALDFLVPVPSEINYLNFTWQSLGKKPYPYNFDVLKSSDPSILPHPSLNISKSGEVPHSPQVFSVELPCTGKRSGEAT 106 (132)
T ss_dssp -GGGSSHSSEB-TT-SEEEEEEEE-SSS-EEEEEEEEEES-TTTBB--EESS-SEEEE-SS-EEEEEE--B-SSS-EEEE
T ss_pred cHhHhhCCcCCCCCcceEEEEEEcCCCceEEEEEEEEEccCcccccCCccccCCCeeccCCCEEEEEEEEecCccceEEE
Confidence 57999999999999999999999965 67999998779999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCCCCCCCcEEEEEeeee
Q psy9567 85 FTIGLLIESRKGKPLPGTPLRLKLRKEC 112 (122)
Q Consensus 85 ~~v~Lni~~~~~k~~n~T~L~fkr~K~C 112 (122)
|+|+||++.++++ |+|+|+|||+|||
T Consensus 107 v~i~lni~~~~~~--n~T~L~~kr~KiC 132 (132)
T PF02019_consen 107 VTIQLNITLPSSK--NGTPLRFKRRKIC 132 (132)
T ss_dssp EEEEEEEEETT----S-EEEE--TT-EE
T ss_pred EEEEEEEEeCCCC--CceEEEEeecccC
Confidence 9999999998877 8999999999999
No 2
>smart00469 WIF Wnt-inhibitory factor-1 like domain. Occurs as extracellular domain in metazoan Ryk receptor tyrosine kinases. C. elegans Ryk is required for cell-cuticle recognition. WIF-1 binds to Wnt and inhibits its activity.
Probab=100.00 E-value=1.2e-41 Score=253.17 Aligned_cols=106 Identities=24% Similarity=0.435 Sum_probs=96.4
Q ss_pred eeeeeeceeeccCCCCeEEEEEeeCC-eeEEeeeeEeeecCCCcCCCCeecccCCCcCCCCceEEEEEeeeCCCCCeEEE
Q psy9567 6 TVVSEKMFLRRCTEMGYVNFTWKSGM-KKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSGIAS 84 (122)
Q Consensus 6 ~~yA~~f~~~VPs~i~~l~FTW~s~~-k~y~Y~~~~l~s~d~~iL~~P~lnIs~~G~VP~~~~~F~V~LpCtG~~sgea~ 84 (122)
.+||++|.+||||+|++|+|||||+. +.++|.+ +|+|+|+++|++|.+|||.+|+||+++|+|+|+|||+|+++|+++
T Consensus 30 n~ya~~F~~~Vps~i~~v~FTW~s~~~~~~~y~~-~l~s~D~~vl~~P~lnI~~~G~VP~~~~~f~V~l~CsG~~sa~~~ 108 (136)
T smart00469 30 SPYALNFMVPVPANIHDLSFTWQALGQEYVPYSL-NVRSDDKEVLPRPIVNISLLGTVPHTLQVFQVELKCSGKRDAEVE 108 (136)
T ss_pred cHHHhccCCCcCCccceEEEEEEcCCCeeeeeEE-EEEeCCHHHcCCCcccccccccCCCCcEEEEEEEEecCCcceEEE
Confidence 57999999999999999999999975 5688877 799999999999999999999999999999999999999998888
Q ss_pred EEEEEEEEecCCCCCCCCcEEEEEeeeecc
Q psy9567 85 FTIGLLIESRKGKPLPGTPLRLKLRKECAE 114 (122)
Q Consensus 85 ~~v~Lni~~~~~k~~n~T~L~fkr~K~C~~ 114 (122)
|+|+|+++.. +.+|+|+|+|||+|||++
T Consensus 109 V~l~l~~~~~--~~~~~tpl~~k~~K~C~~ 136 (136)
T smart00469 109 VTVIVEVSLG--STKNPTPLNFRRKKICLQ 136 (136)
T ss_pred EEEEEEEeeC--CCCCCCcEEEEEeeeecC
Confidence 8888877764 334899999999999985
No 3
>KOG1024|consensus
Probab=100.00 E-value=8.2e-34 Score=242.90 Aligned_cols=107 Identities=25% Similarity=0.426 Sum_probs=100.1
Q ss_pred eeeeeeceeeccCCCCeEEEEEeeCCeeEEeeeeEeeecCCCcCCCCeecccCCCcCCCCceEEEEEeeeCCCCCeEEEE
Q psy9567 6 TVVSEKMFLRRCTEMGYVNFTWKSGMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGNRSGIASF 85 (122)
Q Consensus 6 ~~yA~~f~~~VPs~i~~l~FTW~s~~k~y~Y~~~~l~s~d~~iL~~P~lnIs~~G~VP~~~~~F~V~LpCtG~~sgea~~ 85 (122)
.+||++|++|||+||++|+|||||+ .+.+|++ .++|+|.++|+.|.+|||.+|+||+++|+|+|+|.|+|.++||+++
T Consensus 50 s~Yal~F~~~Vpani~~lsFTW~a~-~~v~Y~i-~v~sdd~~vl~~P~vnIs~~GeVP~tlq~f~velkCsG~r~~ev~V 127 (563)
T KOG1024|consen 50 SDYALNFAVPVPANISDLSFTWQAD-HPVPYSI-NVASDDTEVLPRPIVNISRIGEVPVTLQTFGVELKCSGTRNAEVTV 127 (563)
T ss_pred hhhhheeceeccccccceEEEEecC-CcceeEE-EEEeCcceecccceeeccccCcCCcchheeEEEEEecccccceEEE
Confidence 4799999999999999999999988 5677777 4899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCCCCCCCcEEEEEeeeecccc
Q psy9567 86 TIGLLIESRKGKPLPGTPLRLKLRKECAERM 116 (122)
Q Consensus 86 ~v~Lni~~~~~k~~n~T~L~fkr~K~C~~~~ 116 (122)
+|++++..++.| |.|.|+|||+|||++++
T Consensus 128 t~~l~~~~ns~k--n~t~l~fkrkKiC~~~~ 156 (563)
T KOG1024|consen 128 TINLEVILNSTK--NNTNLIFKRKKICLREE 156 (563)
T ss_pred EEEEEEEEcCCC--CceeEEeehhhhhhcch
Confidence 999999988666 89999999999999863
No 4
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=40.17 E-value=31 Score=24.20 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCeecccCCCcCCCCceEEEEEeeeC-CCCCeEEEEEEEEEEEe
Q psy9567 51 PPSVSIKTTGRIPRRPKVFSIQLKCS-GNRSGIASFTIGLLIES 93 (122)
Q Consensus 51 ~P~lnIs~~G~VP~~~~~F~V~LpCt-G~~sgea~~~v~Lni~~ 93 (122)
.|--.|-..|.++..++.|+|.|.|. ...++ ++.++++..-
T Consensus 11 ~~G~~i~i~G~~~~~~~~f~inl~~~~~~~~~--~i~lH~~~rf 52 (133)
T PF00337_consen 11 SPGDSIIIRGTVPPDAKRFSINLQTGPNDPDD--DIALHFNPRF 52 (133)
T ss_dssp ETTEEEEEEEEEBTTSSBEEEEEEES-STTTT--EEEEEEEEEC
T ss_pred CCCcEEEEEEEECCCCCEEEEEecCCCcCCCC--CEEEEEEEEe
Confidence 34445667899999999999999996 24455 5566666653
No 5
>PF13573 SprB: SprB repeat
Probab=36.44 E-value=43 Score=19.23 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=12.8
Q ss_pred EEeeeCCCCCeEEEEEE
Q psy9567 71 IQLKCSGNRSGIASFTI 87 (122)
Q Consensus 71 V~LpCtG~~sgea~~~v 87 (122)
....|.|..+|.+++++
T Consensus 5 ~~vtC~g~~dG~i~v~~ 21 (37)
T PF13573_consen 5 TNVTCFGGNDGSITVTV 21 (37)
T ss_pred eccccCCCCCeEEEEEE
Confidence 46789999999666544
No 6
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=35.15 E-value=42 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=26.7
Q ss_pred CCeecccCCCcCCCCceEEEEEeeeCCCCCeEEEEEEEEEEE
Q psy9567 51 PPSVSIKTTGRIPRRPKVFSIQLKCSGNRSGIASFTIGLLIE 92 (122)
Q Consensus 51 ~P~lnIs~~G~VP~~~~~F~V~LpCtG~~sgea~~~v~Lni~ 92 (122)
.|--.|-..|.++...+.|+|.|.+... ++.++++..
T Consensus 11 ~~G~~i~i~G~~~~~~~~f~Inl~~~~~-----~i~lH~n~r 47 (127)
T cd00070 11 KPGSTLTVKGRVLPNAKRFSINLGTGSS-----DIALHFNPR 47 (127)
T ss_pred cCCCEEEEEEEECCCCCEEEEEEecCCC-----CEEEEEeee
Confidence 4455667789999999999999998432 445555544
No 7
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=28.87 E-value=32 Score=20.18 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=18.8
Q ss_pred CCeecccCCCcCCCCceEEEEEeeeCCCC
Q psy9567 51 PPSVSIKTTGRIPRRPKVFSIQLKCSGNR 79 (122)
Q Consensus 51 ~P~lnIs~~G~VP~~~~~F~V~LpCtG~~ 79 (122)
+|+|.+.....+....+ +.|.|+-..
T Consensus 1 kP~I~~~~~~~~~~~~~---~~l~C~~~~ 26 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS---VTLTCSAEG 26 (75)
T ss_dssp ESEEEEESTSEEETTEE---EEEEEEESS
T ss_pred CCEEEEcCCCcEeecee---EEEEEEEcc
Confidence 37788887776666666 899998643
No 8
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=24.84 E-value=70 Score=22.69 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=17.2
Q ss_pred eeeccCCCCeEEEEEeeCC
Q psy9567 13 FLRRCTEMGYVNFTWKSGM 31 (122)
Q Consensus 13 ~~~VPs~i~~l~FTW~s~~ 31 (122)
.+.+|++...+|-.||.+.
T Consensus 58 tl~Lp~n~t~vnhVWQ~G~ 76 (101)
T PF04526_consen 58 TLKLPGNSTSVNHVWQVGP 76 (101)
T ss_pred EEEcCCCCcEEEEEeCcCC
Confidence 5789999999999999983
No 9
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=24.17 E-value=2.2e+02 Score=19.14 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred CeecccCCCcCCCCceEEEEEeeeCCCCCeE-EEEEEEEEEEe
Q psy9567 52 PSVSIKTTGRIPRRPKVFSIQLKCSGNRSGI-ASFTIGLLIES 93 (122)
Q Consensus 52 P~lnIs~~G~VP~~~~~F~V~LpCtG~~sge-a~~~v~Lni~~ 93 (122)
|.+.|...|.++ -=+.|.+.+..+...+-. -.+.+.|....
T Consensus 1 p~~~i~~~~~~~-vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~ 42 (107)
T PF00927_consen 1 PEIKIKLPGDPV-VGQDFTVSVSFTNPSSEPLRNVSLNLCAFT 42 (107)
T ss_dssp EEEEEEEESEEB-TTSEEEEEEEEEE-SSS-EECEEEEEEEEE
T ss_pred CeEEEEECCCcc-CCCCEEEEEEEEeCCcCccccceeEEEEEE
Confidence 344555555555 346666666666554444 34444444443
No 10
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=24.14 E-value=96 Score=21.39 Aligned_cols=35 Identities=3% Similarity=0.089 Sum_probs=29.1
Q ss_pred CCCcCCCCceEEEEEeeeCCCCCeEEEEEEE---EEEE
Q psy9567 58 TTGRIPRRPKVFSIQLKCSGNRSGIASFTIG---LLIE 92 (122)
Q Consensus 58 ~~G~VP~~~~~F~V~LpCtG~~sgea~~~v~---Lni~ 92 (122)
..|.+|..-+.|+|.|-.+|-...+..|.+. |.|+
T Consensus 6 ~~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~ 43 (91)
T cd06480 6 PRNPPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVS 43 (91)
T ss_pred ccCCCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEE
Confidence 4788999999999999999999997777764 5554
No 11
>PF05100 Phage_tail_L: Phage minor tail protein L ; InterPro: IPR006487 This entry is represented by Bacteriophage lambda, GpL, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.72 E-value=1e+02 Score=24.76 Aligned_cols=36 Identities=6% Similarity=0.258 Sum_probs=30.8
Q ss_pred EEEEeeCC-eeEEeeeeEeeecCCCcCCCCeecccCC
Q psy9567 24 NFTWKSGM-KKYYYNFDRLQSFNENILEPPSVSIKTT 59 (122)
Q Consensus 24 ~FTW~s~~-k~y~Y~~~~l~s~d~~iL~~P~lnIs~~ 59 (122)
..+||-.. .+|++.++-++.+....++.|+|.++--
T Consensus 20 ~I~WqG~~Y~~~Pi~~~Gfe~~~~G~~~rPtLtVsNi 56 (206)
T PF05100_consen 20 SIIWQGQEYQPWPIEASGFEMSGDGQAPRPTLTVSNI 56 (206)
T ss_pred ceeeCCcEeEEEeEEEeeeEEcCCCCCCCCeEEEecc
Confidence 78999776 5799999999988888999999998753
No 12
>PRK10040 hypothetical protein; Provisional
Probab=20.90 E-value=39 Score=21.61 Aligned_cols=18 Identities=39% Similarity=0.656 Sum_probs=13.7
Q ss_pred EeeeCCCCCeEEEEEEEE
Q psy9567 72 QLKCSGNRSGIASFTIGL 89 (122)
Q Consensus 72 ~LpCtG~~sgea~~~v~L 89 (122)
.-||+|+..|++.-+=..
T Consensus 18 n~PCSG~KGGis~C~g~~ 35 (52)
T PRK10040 18 NKPCSGKKGGISHCTGGK 35 (52)
T ss_pred CCCCCCCCCCcccccCCE
Confidence 469999999988766333
Done!