RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9567
(122 letters)
>gnl|CDD|216849 pfam02019, WIF, WIF domain. The WIF domain is found in the RYK
tyrosine kinase receptors and WIF, the Wnt-inhibitory-
factor. The domain is extracellular and contains two
conserved cysteines that may form a disulphide bridge.
This domain is Wnt binding in WIF, and it has been
suggested that RYK may also bind to Wnt. The WIF domain
is a member of the immunoglobulin superfamily, and it
comprises nine beta-strands and two alpha-helices, with
two of the beta-strands (6 and 9) interrupted by four
and six residues of irregular secondary structure,
respectively. Considering that the activity of Wnts
depends on the presence of a palmitoylated cysteine
residue in their amino-terminal polypeptide segment, Wnt
proteins are lipid-modified and can act as stem cell
growth factors, it is likely that the WIF domain
recognises and binds to Wnts that have been activated by
palmitoylation and that the recognition of palmitoylated
Wnts by WIF-1 is effected by its WIF domain rather than
by its EGF domains. A strong binding affinity for
palmitoylated cysteine residues would further explain
the remarkably high affinity of human WIF-1 not only for
mammalian Wnts, but also for Wnts from Xenopus and
Drosophila.
Length = 132
Score = 122 bits (308), Expect = 3e-37
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 19 EMGYVNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSG 77
E+ +NFTW+S G +KY Y+FD L S + IL+ P+++I +G +PR VFS+ L CSG
Sbjct: 40 EVNSLNFTWQSLGKRKYPYSFDVLVSSDPEILKAPTLNISHSGEVPREASVFSVDLPCSG 99
Query: 78 NRSGIASFTIGLLIESRKGKPLPGTPLRLKLRKEC 112
NRSG A FT+ L + + +GK GTPLR K +K C
Sbjct: 100 NRSGEAVFTVNLEVTNSRGK--NGTPLRFKRKKIC 132
>gnl|CDD|128745 smart00469, WIF, Wnt-inhibitory factor-1 like domain. Occurs as
extracellular domain in metazoan Ryk receptor tyrosine
kinases. C. elegans Ryk is required for cell-cuticle
recognition. WIF-1 binds to Wnt and inhibits its
activity.
Length = 136
Score = 65.2 bits (159), Expect = 1e-14
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 19 EMGYVNFTWKSGMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGN 78
+ ++FTW++ ++Y ++S ++ +L P V+I G +P +VF ++LKCSG
Sbjct: 43 NIHDLSFTWQALGQEYVPYSLNVRSDDKEVLPRPIVNISLLGTVPHTLQVFQVELKCSGK 102
Query: 79 RSGIASFTIGLLIESRKGKPLPGTPLRLKLRKECA 113
R A + +++E G TPL + +K C
Sbjct: 103 RD--AEVEVTVIVEVSLGSTKNPTPLNFRRKKICL 135
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 30.0 bits (67), Expect = 0.27
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 44 FNENILEPPSVSIKTTGRIPRRPKV 68
F+ IL PP +I TG I +RP+V
Sbjct: 501 FDTPILNPPQAAILGTGAIVKRPRV 525
>gnl|CDD|131508 TIGR02455, TreS_stutzeri, trehalose synthase, Pseudomonas stutzeri
type. Trehalose synthase catalyzes a one-step
conversion of maltose to trehalose. This is an
alternative to the OtsAB and TreYZ pathways. This family
includes a characterized example from Pseudomonas
stutzeri plus very closely related sequences from other
Pseudomonads. Cutoff scores are set to find a more
distantly related sequence from Desulfovibrio vulgaris,
likely to be functionally equivalent, between trusted
and noise limits [Energy metabolism, Biosynthesis and
degradation of polysaccharides, Cellular processes,
Adaptations to atypical conditions].
Length = 688
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 95 KGKPLPGTPLRLKLRKECAERM 116
KG+ LPG LR +R+E ER+
Sbjct: 424 KGQTLPGGHLREHIREEIYERL 445
>gnl|CDD|132153 TIGR03109, exosortase_1, exosortase A. The predicted
protein-sorting transpeptidase that we call exosortase
(see TIGR02602) has distinct subclasses that associated
with different types of exopolysaccharide production
loci. We designate this, the most common type so far,
exosortase 1. We propose the gene symbol xrtA, analogous
to srtA for the most common type of sortase in
Gram-positive bacteria.
Length = 267
Score = 27.2 bits (61), Expect = 2.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 68 VFSIQLKCSGNRSGIASFTIGLLI 91
F + CSG R IAS IG L
Sbjct: 170 TFEVAEACSGLRYLIASLAIGALY 193
>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed.
Length = 296
Score = 26.7 bits (60), Expect = 3.5
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 4 RCTVVSEK-MFLRRCTEMGYVNFTWKSGMKKYYYNFD 39
TV + K L R TEMG F S + + D
Sbjct: 177 NVTVGARKSAHLARITEMGLSPFHL-SELAEEVGKID 212
>gnl|CDD|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated.
Length = 603
Score = 26.3 bits (59), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 100 PGTPLRLKLRKECAERMC 117
PGTPLR L +E A R+
Sbjct: 249 PGTPLRDALTREAARRVL 266
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 26.0 bits (57), Expect = 6.2
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 66 PKVFSIQLKCSGNRSGIASFTIGLLIESRKGKPLPGTPLRLKLRKECA--ERMCYRLF 121
P+V +I LKC GL S+ PL TPL+L L + + YRLF
Sbjct: 222 PEVITIHLKCFAANGSEFDCYGGL---SKVNTPLL-TPLKLSLEEWSTKPKNDVYRLF 275
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase
(catalytic domain). These proteins contain one to three
copies of a lipoyl binding domain followed by the
catalytic domain.
Length = 212
Score = 25.2 bits (56), Expect = 8.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 48 ILEPPSVSIKTTGRIPRRPKVFSIQLK 74
I+ PP V+I G I +RP V ++
Sbjct: 146 IINPPQVAILGVGAIRKRPVVVDGEIV 172
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 25.3 bits (56), Expect = 9.8
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 11 KMFLRRCTEMGYV---NFTWKSGMKKYYY 36
+ E G + FT SG K YY
Sbjct: 4 RELAELLLEKGALKFGEFTLSSGRKSPYY 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.437
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,213,910
Number of extensions: 525900
Number of successful extensions: 531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 38
Effective length of database: 7,211,866
Effective search space: 274050908
Effective search space used: 274050908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)