RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9567
(122 letters)
>2ygn_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2d3j_A
Length = 156
Score = 114 bits (285), Expect = 1e-33
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 18 TEMGYVNFTWKSGMKK-YYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCS 76
+ +NFTW++ + Y+Y F L+S + I+ P+V++ G +P V + C
Sbjct: 51 VNIHSMNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCL 110
Query: 77 GNRSGIASFTIGLLIESRKGKPLPGTPLRLKLRKECAE 114
G + G+A+F + +++ + +G + TP K C
Sbjct: 111 GXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQG 148
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 92.6 bits (230), Expect = 6e-24
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 19 EMGYVNFTWKS-GMKKYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCSG 77
+ +NFTW++ G +Y+Y F L+S ++ I+ P+V++ G +P + V + C G
Sbjct: 52 NIHSMNFTWQAAGQAEYFYEFLSLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLG 111
Query: 78 NRSGIASFTIGLLIESRKGKPLPGTPLRLKLRKECAERMC 117
+ G+A+F + +++ + +G + TP K C + C
Sbjct: 112 KQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAEC 151
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 80.3 bits (197), Expect = 3e-20
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 18 TEMGYVNFTWKSGMK-KYYYNFDRLQSFNENILEPPSVSIKTTGRIPRRPKVFSIQLKCS 76
+ +NFTW++ + +Y+Y F L+S + I+ P+V++ G +P V + C
Sbjct: 51 VNIHSMNFTWQAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCL 110
Query: 77 GNRSGIASFTIGLLIESRKGKPLPGTPLRLKLRKECAERMC 117
G + G+A+F + +++ + +G + TP K C + C
Sbjct: 111 GXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAEC 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.050
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 11/35 (31%)
Query: 28 KSGMKKYYYNFDRLQSFNENILEP---PSVSIKTT 59
K +KK LQ+ + + P+++IK T
Sbjct: 19 KQALKK-------LQA-SLKLYADDSAPALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.18
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 32/111 (28%)
Query: 26 TWKSGMKKYY--YNFDRLQSFNE---NILEPP-------SVSI--KTTGRIPRRPKVFSI 71
TW + N D+L + E N+LEP +S+ + IP + S+
Sbjct: 343 TWD-----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIP--TILLSL 394
Query: 72 ---QLKCSGNRSGIASFTIGLLIESRKGKP----LPGTPLRLKLRKECAER 115
+ S + L+E ++ K +P + L+L+ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPS--IYLELKVKLENE 442
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 26.3 bits (58), Expect = 2.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 11 KMFLRRCTEMGYV---NFTWKSGMK-KYYYN 37
MF+ + + FT KSG Y++N
Sbjct: 24 AMFIEFALKNQVLKFGEFTLKSGRISPYFFN 54
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 25.0 bits (55), Expect = 4.3
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 36 YNFDRLQSFNENILEPPSVSIKTTGRIP 63
Y R+ + N PP + TTG +
Sbjct: 68 YEI-RIVARNGQQYSPPVSTTFTTGSLE 94
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 25.3 bits (56), Expect = 5.5
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 24 NFTWKSGMK-KYYYNFDRLQSF 44
+F KSG+ Y + + S
Sbjct: 20 DFVLKSGLSSPIYIDLRGIVSR 41
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 25.2 bits (55), Expect = 6.1
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 24 NFTWKSGMK-KYYYN 37
+F KSG + Y++N
Sbjct: 26 SFKLKSGRESPYFFN 40
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich,
carbohydrate binding protein, sugar binding protein;
HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A*
2d6n_A* 2d6p_A* 2d6o_X*
Length = 159
Score = 25.0 bits (54), Expect = 6.1
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 44 FNENILEPPSV--SIKTTGRIPRRPKVFSIQLKCSGNRSGIA 83
F I + G + F + + S N + IA
Sbjct: 19 FTGPIQGGLQEGLQVTLQGTTKSFAQRFVVNFQNSFNGNDIA 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.437
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,892,983
Number of extensions: 96659
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 16
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)