RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9567
         (122 letters)



>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania
           mexicana [TaxId: 5665]}
          Length = 99

 Score = 25.6 bits (56), Expect = 1.1
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 67  KVFSIQLKCSGNRSGIASFTIGLLIESRKGKPLPGTPLRL 106
            +          ++   + T    I  R+G  LPG  + L
Sbjct: 60  ILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDL 99


>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId:
          38577]}
          Length = 134

 Score = 24.1 bits (52), Expect = 4.3
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 52 PSVSIKTTGRIPRRPKVFSIQLKCSGN 78
          P   ++  G IP   K F++ L    +
Sbjct: 14 PGHCVEIKGSIPPDCKGFAVNLGEDAS 40


>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 134

 Score = 24.1 bits (52), Expect = 5.1
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 52 PSVSIKTTGRIPRRPKVFSIQLKCSGN 78
          P   ++  G +    K F + L    N
Sbjct: 13 PGECLRVRGEVAPDAKSFVLNLGKDSN 39


>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 102

 Score = 23.7 bits (51), Expect = 5.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 69  FSIQLKCSGNRSGIASFTIGLLIESRKGKPLPGTPLRL 106
            S+Q+K  G    +     G  + S+KG  LPG  + L
Sbjct: 65  ISLQVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDL 102


>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 137

 Score = 23.7 bits (51), Expect = 6.2
 Identities = 3/27 (11%), Positives = 9/27 (33%)

Query: 52 PSVSIKTTGRIPRRPKVFSIQLKCSGN 78
          P + I   G +       ++  +   +
Sbjct: 15 PRMLITILGTVKPNANRIALDFQRGND 41


>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 132

 Score = 23.3 bits (50), Expect = 7.1
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 52 PSVSIKTTGRIPRRPKVFSIQLKCSGN 78
          P   +K  G+I    K FS+ +    +
Sbjct: 12 PGECVKVKGKILSDAKGFSVNVGKDSS 38


>d1qoxa_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus circulans, subsp.
           alkalophilus [TaxId: 1397]}
          Length = 449

 Score = 24.0 bits (51), Expect = 7.5
 Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 4/23 (17%)

Query: 24  NFTWKSGMKK----YYYNFDRLQ 42
           NF W  G        + ++D L 
Sbjct: 406 NFEWAEGYGMRFGLVHVDYDTLV 428


>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 129

 Score = 23.2 bits (50), Expect = 7.5
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 52 PSVSIKTTGRIPRRPKVFSIQLKCSGN 78
          P  ++K TG I      F I L    +
Sbjct: 11 PGSTLKITGSIADGTDGFVINLGQGTD 37


>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 133

 Score = 23.3 bits (50), Expect = 7.9
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 52 PSVSIKTTGRIPRRPKVFSIQLKCSGNRSGIASFTI 87
          P   ++  G +P     F + L C   +   A+   
Sbjct: 13 PGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHF 48


>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium
          [TaxId: 90371]}
          Length = 213

 Score = 23.6 bits (50), Expect = 8.3
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)

Query: 24 NFTWKSGMK-KYYYNFDRLQSFNE 46
           FT KSG K  Y++N     +  +
Sbjct: 22 EFTLKSGRKSPYFFNAGLFNTGRD 45


>d1is3a_ b.29.1.3 (A:) Congerin II {Conger eel (Conger myriaster)
          [TaxId: 7943]}
          Length = 134

 Score = 23.3 bits (50), Expect = 8.6
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 46 ENILEPPSVSIKTTGRIPRRPKVFSIQLKCSGN 78
           NI     + +   G +      FSI +  S +
Sbjct: 6  RNIPFKLGMYLTVGGVVNSNATRFSINVGESTD 38


>d1c1la_ b.29.1.3 (A:) Congerin I {Conger eel (Conger myriaster)
          [TaxId: 7943]}
          Length = 135

 Score = 23.3 bits (50), Expect = 8.6
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 55 SIKTTGRIPRRPKVFSIQLKCSGN 78
           +   G I   P+ FS+ +  S N
Sbjct: 15 FLTVGGFINNSPQRFSVNVGESMN 38


>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 489

 Score = 23.7 bits (50), Expect = 9.3
 Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 4/23 (17%)

Query: 24  NFTWKSGMKK----YYYNFDRLQ 42
           N+ W SG          +++  +
Sbjct: 430 NYEWASGFSMRFGLLKVDYNTKR 452


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,223
Number of extensions: 21324
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 22
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)