BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9568
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C C NGG C ++ CEC GF+G CE +CT +C+NGG CV C C GFYG+ C
Sbjct: 151 CPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNC 210
Query: 81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
+ + C C NGG C KC CPPG G+ CE ISKC PC NGG+C G +KC+
Sbjct: 211 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE------ISKCPQPCRNGGKCIGKSKCK 264
Query: 141 CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDS 191
C G+ GD C +P P G C C C EGW GR C++R ++
Sbjct: 265 CSKGYQGDLCS---KPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEA 312
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 19 GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
+CT +C+NGG CV C C GFYG+ C+ C+ C NGG C C C G G
Sbjct: 181 ALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGE 240
Query: 79 RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNK 138
+CE SKC PC NGG+C G +KC+C G+ GD C +P C C G C NK
Sbjct: 241 QCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCS---KPV---CEPGCGAHGTCHEPNK 294
Query: 139 CRCPPGFLGDYCE 151
C+C G+ G +C
Sbjct: 295 CQCQEGWHGRHCN 307
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 57 CLNGGKCVQKD---TCECQKGFYGLRCEF--SKCII-PCLNGGRCK---GVNKCRCPPGF 107
C + GKC+ C+C +G+ G RCE ++C+ PC N C G +C C PG+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 108 LGDYCEIWQRPYISKCIIPCLNGGRC-KGVN--KCRCPPGFLGDYCEI 152
G +CE+ S PCL+ GRC +N +C CP GF G C++
Sbjct: 75 EGVHCEVNTDECASS---PCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEFCI---CTEKCLNGGKCVQKD---TCECQKGF 75
C + GKC+ C+C +G+ G RCE + + C N C+ + C C G+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 76 YGLRCEFSK---CIIPCLNGGRC-KGVN--KCRCPPGFLGDYCEI 114
G+ CE + PCL+ GRC +N +C CP GF G C++
Sbjct: 75 EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 57 CLNGGKCVQ---KDTCECQKGFYGLRCEF--SKCII-PCLNGGRCK---GVNKCRCPPGF 107
C + GKC+ C+C +G+ G RCE ++C+ PC N C G +C C PG+
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 72
Query: 108 LGDYCEIWQRPYISKCIIPCLNGGRC-KGVN--KCRCPPGFLGDYCE 151
G +CE+ S PCL+ GRC +N +C CP GF G C+
Sbjct: 73 EGVHCEVNTDECASS---PCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 25 CLNGGKCVQ---KDTCECQKGFYGLRCEFCI---CTEKCLNGGKCVQKD---TCECQKGF 75
C + GKC+ C+C +G+ G RCE + + C N C+ + C C G+
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 72
Query: 76 YGLRCEFSK---CIIPCLNGGRC-KGVN--KCRCPPGFLGDYCE 113
G+ CE + PCL+ GRC +N +C CP GF G C+
Sbjct: 73 EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 88 PCLNGGRC---KGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRC 141
PC + G+C G +C+C G+ G CEI +S PC N C G +C C
Sbjct: 12 PCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSN---PCQNDATCLDQIGEFQCIC 68
Query: 142 PPGFLGDYCEI 152
PG+ G +CE+
Sbjct: 69 MPGYEGVHCEV 79
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 30 KCVQKDTCECQKGFYGLRCEFCICTEKCL-NGGKCVQKDTCECQKGFYGLRCEFSKCI-I 87
C Q C +G+ G C IC + C G C C CQ G+ GL C+ KCI
Sbjct: 45 ACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD--KCIPH 102
Query: 88 PCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN----KCRCPP 143
P G C +C C + G C+ + PCLNGG C +C CP
Sbjct: 103 PGCVHGICNEPWQCLCETNWGGQLCD--KDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPE 160
Query: 144 GFLGDYCEI 152
G+ G CEI
Sbjct: 161 GYSGPNCEI 169
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 29 GKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCE----FSK 84
G C C CQ G+ GL C+ CI C++ G C + C C+ + G C+ +
Sbjct: 77 GSCKLPGDCRCQYGWQGLYCDKCIPHPGCVH-GICNEPWQCLCETNWGGQLCDKDLNYCG 135
Query: 85 CIIPCLNGGRCKGVN----KCRCPPGFLGDYCEI 114
PCLNGG C +C CP G+ G CEI
Sbjct: 136 THQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI 169
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 113 EIWQRPYISKCIIPCLNG-----GRCKGVNKCRCPPGFLGDYCEIWQRPYICPKP-CKQG 166
E W P ++ I C G G CK CRC G+ G YC+ P P C G
Sbjct: 56 EGWMGPECNRAI--CRQGCSPKHGSCKLPGDCRCQYGWQGLYCDK-----CIPHPGCVHG 108
Query: 167 VCSAARTCACYEGWFGRTCSQ 187
+C+ C C W G+ C +
Sbjct: 109 ICNEPWQCLCETNWGGQLCDK 129
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
EC+ + S+C C NG C KC C PG+ GD+C +KC C +
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 432
Query: 130 GGRCKGVNKCRCPPGFLGDYCEIWQR 155
GG C NKC C G+LG CE R
Sbjct: 433 GGVCVRPNKCLCKKGYLGPQCEQVDR 458
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
C+ C NG C C C G+ G C +KC C +GG C NKC C G+LG C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 113 EIWQR 117
E R
Sbjct: 454 EQVDR 458
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C+ C NG C C C G+ G C C C +GG CV+ + C C+KG+ G +C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 81 E 81
E
Sbjct: 454 E 454
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 83 SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRP---YISKCIIPCLNGGRCKGVNKC 139
SK + NG K V+ R + + C +P S+C C NG C KC
Sbjct: 355 SKSMTQTHNGKLYKIVDPKRP---LMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGKC 410
Query: 140 RCPPGFLGDYCEIWQRPYICPKPCKQG-VCSAARTCACYEGWFGRTCSQ 187
C PG+ GD+C R C C+ G VC C C +G+ G C Q
Sbjct: 411 CCSPGWEGDFC----RTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
EC+ + S+C C NG C KC C PG+ GD+C +KC C +
Sbjct: 401 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 453
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
GG C NKC C G+LG CE
Sbjct: 454 GGVCVRPNKCLCKKGYLGPQCE 475
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C+ C NG C C C G+ G C C C +GG CV+ + C C+KG+ G +C
Sbjct: 416 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474
Query: 81 E 81
E
Sbjct: 475 E 475
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
C+ C NG C C C G+ G C +KC C +GG C NKC C G+LG C
Sbjct: 416 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474
Query: 113 E 113
E
Sbjct: 475 E 475
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 83 SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRP---YISKCIIPCLNGGRCKGVNKC 139
SK + NG K V+ R + + C +P S+C C NG C KC
Sbjct: 376 SKSMTQTHNGKLYKIVDPKRP---LMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGKC 431
Query: 140 RCPPGFLGDYCEIWQRPYICPKPCKQG-VCSAARTCACYEGWFGRTC 185
C PG+ GD+C R C C+ G VC C C +G+ G C
Sbjct: 432 CCSPGWEGDFC----RTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
EC+ + S+C C NG C KC C PG+ GD+C +KC C +
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 432
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
GG C NKC C G+LG CE
Sbjct: 433 GGVCVRPNKCLCKKGYLGPQCE 454
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C+ C NG C C C G+ G C C C +GG CV+ + C C+KG+ G +C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 81 E 81
E
Sbjct: 454 E 454
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
C+ C NG C C C G+ G C +KC C +GG C NKC C G+LG C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 113 E 113
E
Sbjct: 454 E 454
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 83 SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRP---YISKCIIPCLNGGRCKGVNKC 139
SK + NG K V+ R + + C +P S+C C NG C KC
Sbjct: 355 SKSMTQTHNGKLYKIVDPKRP---LMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGKC 410
Query: 140 RCPPGFLGDYCEIWQRPYICPKPCKQG-VCSAARTCACYEGWFGRTCSQ 187
C PG+ GD+C R C C+ G VC C C +G+ G C Q
Sbjct: 411 CCSPGWEGDFC----RTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
EC+ + S+C C NG C KC C PG+ GD+C +KC C +
Sbjct: 380 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 432
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
GG C NKC C G+LG CE
Sbjct: 433 GGVCVRPNKCLCKKGYLGPQCE 454
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C+ C NG C C C G+ G C C C +GG CV+ + C C+KG+ G +C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 81 E 81
E
Sbjct: 454 E 454
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
C+ C NG C C C G+ G C +KC C +GG C NKC C G+LG C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 113 E 113
E
Sbjct: 454 E 454
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 83 SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRP---YISKCIIPCLNGGRCKGVNKC 139
SK + NG K V+ R + + C +P S+C C NG C KC
Sbjct: 355 SKSMTQTHNGKLYKIVDPKRP---LMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGKC 410
Query: 140 RCPPGFLGDYCEIWQRPYICPKPCKQG-VCSAARTCACYEGWFGRTCSQ 187
C PG+ GD+C R C C+ G VC C C +G+ G C Q
Sbjct: 411 CCSPGWEGDFC----RTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLN 129
EC+ + S+C C NG C KC C PG+ GD+C +KC C +
Sbjct: 401 ECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRT------AKCEPACRH 453
Query: 130 GGRCKGVNKCRCPPGFLGDYCE 151
GG C NKC C G+LG CE
Sbjct: 454 GGVCVRPNKCLCKKGYLGPQCE 475
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C+ C NG C C C G+ G C C C +GG CV+ + C C+KG+ G +C
Sbjct: 416 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474
Query: 81 E 81
E
Sbjct: 475 E 475
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
C+ C NG C C C G+ G C +KC C +GG C NKC C G+LG C
Sbjct: 416 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 474
Query: 113 E 113
E
Sbjct: 475 E 475
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 121 SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQG-VCSAARTCACYEG 179
S+C C NG C KC C PG+ GD+C R C C+ G VC C C +G
Sbjct: 414 SECSRLCRNG-YCTPTGKCCCSPGWEGDFC----RTAKCEPACRHGGVCVRPNKCLCKKG 468
Query: 180 WFGRTC 185
+ G C
Sbjct: 469 YLGPQC 474
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 47/159 (29%)
Query: 20 ICTEKCLNGGKCVQKDT--CECQKGFYGLRCEFC--------ICTEKCLNGGKCVQ---- 65
+CT C+N G C +DT C C GF G CE C E+C C
Sbjct: 201 LCT-ACMNNGVC-HEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC 258
Query: 66 ---KDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISK 122
C C G+ GL+C + C PGF G C++ +
Sbjct: 259 LPDPYGCSCATGWKGLQCNEA-------------------CHPGFYGPDCKL-------R 292
Query: 123 CIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPK 161
C C NG C C C PG+ G CE P + PK
Sbjct: 293 C--SCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPK 329
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 127 CLNGGRC-KGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTC----------- 174
C+N G C + +C CPPGF+G CE + + CK+ CS C
Sbjct: 205 CMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKER-CSGQEGCKSYVFCLPDPY 263
Query: 175 --ACYEGWFGRTCSQ 187
+C GW G C++
Sbjct: 264 GCSCATGWKGLQCNE 278
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 51/144 (35%), Gaps = 35/144 (24%)
Query: 69 CECQKGFYGLRCEFSKCIIPCLNGGRC-KGVNKCRCPPGFLGDYCEIWQRPYISKCIIPC 127
CE QK +G C + C+N G C + +C CPPGF+G CE C +
Sbjct: 189 CEAQK--WGPEC--NHLCTACMNNGVCHEDTGECICPPGFMGRTCE-------KACELHT 237
Query: 128 LN---GGRCKGVNKCR----CPPGFLGDYCEIWQRPYICPKPCKQG-------------- 166
RC G C+ C P G C + C + C G
Sbjct: 238 FGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNN 297
Query: 167 --VCSAARTCACYEGWFGRTCSQR 188
+C + C C GW G C +
Sbjct: 298 GEMCDRFQGCLCSPGWQGLQCERE 321
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 17/82 (20%)
Query: 18 SGICT-EKCLNGGKCVQKDT----------CECQKGFYGLRCEFCIC---TEKCLNGGKC 63
+G CT C NGG C + C+C +GF G+ C+ I E C NGG C
Sbjct: 52 AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGIC 111
Query: 64 ---VQKDTCECQKGFYGLRCEF 82
V +CEC F G C++
Sbjct: 112 TDLVANYSCECPGEFMGRNCQY 133
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 38/129 (29%)
Query: 57 CLNGGKCVQ-----KDTCECQKGFYGLRCEFSKCII---------------PCLNGGRCK 96
C NGG C+ +CEC GF C + PC NGG C+
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCE 67
Query: 97 GVNK----------CRCPPGFLGDYCEIWQRPYISKC-IIPCLNGGRCKGV---NKCRCP 142
C+CP GF G +C+ I++C + PC NGG C + C CP
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQH----NINECEVEPCKNGGICTDLVANYSCECP 123
Query: 143 PGFLGDYCE 151
F+G C+
Sbjct: 124 GEFMGRNCQ 132
>pdb|2YGO|A Chain A, Wif Domain-Egf-Like Domain 1 Of Human Wnt Inhibitory
Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 40 QKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK 84
Q + C+ C C NGG C ++ CEC GF+G CE +K
Sbjct: 138 QNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTK 182
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 72 QKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE 113
Q + C+ ++C C NGG C C CP GF G +CE
Sbjct: 138 QNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCE 49
C C NGG C ++ CEC GF+G CE
Sbjct: 151 CPGGCRNGGFCNERRICECPDGFHGPHCE 179
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 127 CLNGGRCKGVNKCRCPPGFLGDYCE 151
C NGG C C CP GF G +CE
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCE 179
>pdb|2YGP|A Chain A, Wif Domain-Egf-Like Domain 1 Met77trp Of Human Wnt
Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 188
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 40 QKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK 84
Q + C+ C C NGG C ++ CEC GF+G CE +K
Sbjct: 138 QNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTK 182
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 72 QKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE 113
Q + C+ ++C C NGG C C CP GF G +CE
Sbjct: 138 QNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCE 49
C C NGG C ++ CEC GF+G CE
Sbjct: 151 CPGGCRNGGFCNERRICECPDGFHGPHCE 179
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 127 CLNGGRCKGVNKCRCPPGFLGDYCE 151
C NGG C C CP GF G +CE
Sbjct: 155 CRNGGFCNERRICECPDGFHGPHCE 179
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 88 PCLNGGRC---KGVNKCRCPPGFLGDYCEI 114
PCL+GGRC +G C CP G+ G +C++
Sbjct: 52 PCLHGGRCLEVEGHRLCHCPVGYTGPFCDV 81
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 126 PCLNGGRC---KGVNKCRCPPGFLGDYCEI 152
PCL+GGRC +G C CP G+ G +C++
Sbjct: 52 PCLHGGRCLEVEGHRLCHCPVGYTGPFCDV 81
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 192 GEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKS 225
G+D FY + E GP R LY L+G G+ ++
Sbjct: 317 GDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEA 350
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 42 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 85
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 88 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
PCLNGG CK +N +C CP GF G CE+
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
PCLNGG CK +N +C CP GF G CE+
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 4 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 47
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 3 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 46
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 47 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 90
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR 117
G +CE S PC N G+CK G C C GF G CE++ R
Sbjct: 42 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 81
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 4 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 47
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 3 GDQCETS----PCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRKLCS 46
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIS 121
G +CE S PC N G+CK G C C GF G CE++ R S
Sbjct: 2 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCS 45
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 126 PCLNGGRCKG-VN--KCRCPPGFLGDYCEIWQRPYI----CPKPCKQGVCSAARTCACYE 178
PCLNGG CK +N +C C GF G CE+ I C + CK G S C+C
Sbjct: 55 PCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKV-LCSCTT 113
Query: 179 GW 180
G+
Sbjct: 114 GY 115
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 77 GLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR 117
G +CE S PC N G+CK G C C GF G CE++ R
Sbjct: 2 GDQCETS----PCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR 41
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 81/240 (33%), Gaps = 63/240 (26%)
Query: 37 CECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKG---------------------- 74
C C G+ G CE C G+ Q+ C+K
Sbjct: 448 CRCDTGYIGKNCE-------CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTS 500
Query: 75 ------FYGLRCEFSKCIIPCLNGGRCKGV-------NKCRCPPGFLGDYCEIWQRPYIS 121
YG CE NG C G KCRC PGF G C+ +
Sbjct: 501 DVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERT--TE 558
Query: 122 KCIIP----CLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACY 177
C+ P C GRC+ N C C G+ C Q CP PC + + S A
Sbjct: 559 GCLNPRRVECSGRGRCR-CNVCECHSGYQLPLC---QECPGCPSPCGKYI-SCAECLKFE 613
Query: 178 EGWFGRTCS------QRSDSGEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKSTFYHDD 231
+G FG+ CS Q S++ T D EG V + L G D+ Y D+
Sbjct: 614 KGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWV----AYTLEQQDGMDRYLIYVDE 669
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 88 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR 117
PCLN G CK G C C GF G CE R
Sbjct: 54 PCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 126 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR 155
PCLN G CK G C C GF G CE R
Sbjct: 54 PCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 86
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 88 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR 117
PCLN G CK G C C GF G CE R
Sbjct: 10 PCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 126 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQR 155
PCLN G CK G C C GF G CE R
Sbjct: 10 PCLNQGHCKXGIGDYTCTCAEGFEGKNCEFSTR 42
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYI----CPKPCKQGVCSAARTCACYE 178
PCLNGG CK +N +C C GF G CE+ I C + CK G S C+C
Sbjct: 55 PCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKV-LCSCTT 113
Query: 179 GW 180
G+
Sbjct: 114 GY 115
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 86 IIPCLNGGRCKGVNKCRCPPGFLGDYCE 113
++ C NGG C +C CP + G CE
Sbjct: 370 LLHCQNGGTCHNNVRCLCPAAYTGILCE 397
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 124 IIPCLNGGRCKGVNKCRCPPGFLGDYCE 151
++ C NGG C +C CP + G CE
Sbjct: 370 LLHCQNGGTCHNNVRCLCPAAYTGILCE 397
>pdb|2J5L|A Chain A, Structure Of A Plasmodium Falciparum Apical Membrane
Antigen 1-Fab F8.12.19 Complex
Length = 581
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Query: 187 QRSDSGEDKSTFYHD---DEEG----PPVRNLYSSL 215
Q+ DSGED++T H D EG P +NL+SS+
Sbjct: 30 QQEDSGEDENTLQHAYPIDHEGAEPAPQEQNLFSSI 65
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 135
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 89 CLNGGRC------KGVNKCRCPPGFLGDYCEI 114
CLNGG C ++ C CP F G +CEI
Sbjct: 15 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 46
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 127 CLNGGRC------KGVNKCRCPPGFLGDYCEI 152
CLNGG C ++ C CP F G +CEI
Sbjct: 15 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 46
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 89 CLNGGRC------KGVNKCRCPPGFLGDYCEI 114
CLNGG C ++ C CP F G +CEI
Sbjct: 13 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 44
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 127 CLNGGRC------KGVNKCRCPPGFLGDYCEI 152
CLNGG C ++ C CP F G +CEI
Sbjct: 13 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 44
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 57 CLNGGKCVQKD-----TCECQKGFYGLRCEFSKCI 86
CLNGG C+ + TC C G+ G RCE + +
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCEHADLL 48
>pdb|2I9A|A Chain A, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|B Chain B, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|C Chain C, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|D Chain D, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9B|A Chain A, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|B Chain B, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|C Chain C, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|D Chain D, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 145
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 89 CLNGGRC------KGVNKCRCPPGFLGDYCEI 114
CLNGG C ++ C CP F G +CEI
Sbjct: 15 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 46
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 127 CLNGGRC------KGVNKCRCPPGFLGDYCEI 152
CLNGG C ++ C CP F G +CEI
Sbjct: 15 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 46
>pdb|2FD6|A Chain A, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 122
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 89 CLNGGRC------KGVNKCRCPPGFLGDYCEI 114
CLNGG C ++ C CP F G +CEI
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 34
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 127 CLNGGRC------KGVNKCRCPPGFLGDYCEI 152
CLNGG C ++ C CP F G +CEI
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 34
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 192 GEDKSTFYHDDEEGPPVRNLYSSLLGSDSGEDKS 225
G+D FY + E GP LY L G G+ K+
Sbjct: 302 GDDFHVFYSETEVGPVTHKLYDELTGIQFGDVKA 335
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 89 CLNGGRCKGVNK-----CRCPPGFLGDYCEI 114
C NGG C+ C+CP GF G CEI
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 127 CLNGGRCKGVNK-----CRCPPGFLGDYCEI 152
C NGG C+ C+CP GF G CEI
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 89 CLNGGRC------KGVNKCRCPPGFLGDYCEI 114
CLNGG C ++ C CP F G +CEI
Sbjct: 8 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 39
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 127 CLNGGRC------KGVNKCRCPPGFLGDYCEI 152
CLNGG C ++ C CP F G +CEI
Sbjct: 8 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.144 0.512
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,686,043
Number of Sequences: 62578
Number of extensions: 400523
Number of successful extensions: 1391
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 348
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)