RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9568
(248 letters)
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 144 bits (364), Expect = 8e-42
Identities = 75/175 (42%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Query: 20 ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
C C NGG C ++ CEC GF+G CE +CT +C+NGG CV C C GFYG+
Sbjct: 150 ECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVN 209
Query: 80 CEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
C+ + C C NGG C KC CPPG G+ CE ISKC PC NGG+C G +KC
Sbjct: 210 CDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCE------ISKCPQPCRNGGKCIGKSKC 263
Query: 140 RCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQRSDSGE 193
+C G+ GD C +C C G C C C EGW GR C++R ++
Sbjct: 264 KCSKGYQGDLCSK----PVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASL 314
Score = 124 bits (312), Expect = 4e-34
Identities = 59/175 (33%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
+ + G + Q + C+ C C NGG C ++ CEC GF+G
Sbjct: 119 FEVDVIVMNSEGNTI---LKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHG 175
Query: 78 LRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN 137
CE + C C+NGG C C CPPGF G C+ + C C NGG C
Sbjct: 176 PHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCD------KANCSTTCFNGGTCFYPG 229
Query: 138 KCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQRSDS 191
KC CPPG G+ CEI CP+PC+ G C C C +G+ G CS+
Sbjct: 230 KCICPPGLEGEQCEI----SKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCE 280
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 100 bits (251), Expect = 1e-26
Identities = 43/174 (24%), Positives = 59/174 (33%), Gaps = 16/174 (9%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCE-FCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
+ + G + C +YG C FC + C Q C +G+ G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62
Query: 80 CEFSKCI-IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI-IPCLNGGRCKGVN 137
C + C G CK CRC G+ G YC+ KCI P G C
Sbjct: 63 CNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCD--------KCIPHPGCVHGICNEPW 114
Query: 138 KCRCPPGFLGDYCEIWQRPYICPKPCKQG-----VCSAARTCACYEGWFGRTCS 186
+C C + G C+ +PC G C+C EG+ G C
Sbjct: 115 QCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 87.8 bits (218), Expect = 8e-22
Identities = 39/133 (29%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 25 CLNGGKCVQKDTCECQKGFYGLRCEFCICTEK-CLNGGKCVQKDTCECQKGFYGLRCEFS 83
C Q C +G+ G C IC + G C C CQ G+ GL C+
Sbjct: 40 FFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKC 99
Query: 84 KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN----KC 139
P G C +C C + G C+ + PCLNGG C +C
Sbjct: 100 IPH-PGCVHGICNEPWQCLCETNWGGQLCD--KDLNYCGTHQPCLNGGTCSNTGPDKYQC 156
Query: 140 RCPPGFLGDYCEI 152
CP G+ G CEI
Sbjct: 157 SCPEGYSGPNCEI 169
Score = 79.3 bits (196), Expect = 1e-18
Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCE-FSKCIIPCLNGGRCKGVNKCRCPPGFLGDY 111
+ + G + C +YG C F + C C G++G
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPE 62
Query: 112 CEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAA 171
C I + G CK CRC G+ G YC+ I C G+C+
Sbjct: 63 CNR----AICRQG-CSPKHGSCKLPGDCRCQYGWQGLYCD----KCIPHPGCVHGICNEP 113
Query: 172 RTCACYEGWFGRTCSQRSD 190
C C W G+ C + +
Sbjct: 114 WQCLCETNWGGQLCDKDLN 132
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 82.1 bits (202), Expect = 5e-18
Identities = 34/180 (18%), Positives = 49/180 (27%), Gaps = 24/180 (13%)
Query: 29 GKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCV-------QKDTCECQKGFYGLRCE 81
G+C+ + K YG CE + NG C C C GF G C+
Sbjct: 493 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQ 552
Query: 82 FSKCI--------IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC 133
+ + C GRC+ N C C G+ C+ C PC C
Sbjct: 553 CERTTEGCLNPRRVECSGRGRCRC-NVCECHSGYQLPLCQE-----CPGCPSPCGKYISC 606
Query: 134 KGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQRSDSG 192
+ G G C + C + C+ +
Sbjct: 607 --AECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYL 664
Score = 80.9 bits (199), Expect = 1e-17
Identities = 51/201 (25%), Positives = 64/201 (31%), Gaps = 38/201 (18%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCIC----------------TEKCLNGG 61
C G C C G+ G CE + C G
Sbjct: 430 QSRDRSLCHGKGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLG 488
Query: 62 KCVQKDTCECQKG------FYGLRCEFSKCIIPCLNGGRCKGVN-------KCRCPPGFL 108
CV C C YG CE NG C G KCRC PGF
Sbjct: 489 DCV-CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFE 547
Query: 109 GDYCEIWQRPY--ISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQG 166
G C+ + ++ + C GRC+ N C C G+ C+ CP PC +
Sbjct: 548 GSACQCERTTEGCLNPRRVECSGRGRCRC-NVCECHSGYQLPLCQE---CPGCPSPCGKY 603
Query: 167 VCSAARTCACYEGWFGRTCSQ 187
S A +G FG+ CS
Sbjct: 604 -ISCAECLKFEKGPFGKNCSA 623
Score = 75.1 bits (184), Expect = 1e-15
Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 13/140 (9%)
Query: 21 CTEKCLNGGKCV-QKDTCECQKGFYGLRCEFCICTEKCLNGGKCV-------QKDTCECQ 72
+ C G+ + C C GF G C+ TE CLN + + + CEC
Sbjct: 523 NGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECH 582
Query: 73 KGFYGLRCEFSKCII-PCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGG 131
G+ C+ PC C + G G C + + G
Sbjct: 583 SGYQLPLCQECPGCPSPCGKYISC--AECLKFEKGPFGKNCS--AACPGLQLSNNPVKGR 638
Query: 132 RCKGVNKCRCPPGFLGDYCE 151
CK + C + + +
Sbjct: 639 TCKERDSEGCWVAYTLEQQD 658
Score = 65.9 bits (160), Expect = 1e-12
Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 14/131 (10%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFC-ICTEKCLNGGKCVQKDTCECQKGFYGLR 79
+C G+C + CEC G+ C+ C C C C + + +KG +G
Sbjct: 564 RRVECSGRGRCRC-NVCECHSGYQLPLCQECPGCPSPCGKYISCAE--CLKFEKGPFGKN 620
Query: 80 CEFS----KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC-K 134
C + + + G CK + C + + + + +I C
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGM-----DRYLIYVDESRECVA 675
Query: 135 GVNKCRCPPGF 145
G + C F
Sbjct: 676 GPDGCGENLYF 686
Score = 50.1 bits (119), Expect = 3e-07
Identities = 33/196 (16%), Positives = 50/196 (25%), Gaps = 29/196 (14%)
Query: 25 CLNGGKCVQKDTCECQKGFYGLRCEF---CICTEKCLNGGKCVQKDTCECQKGFYGLR-- 79
C NG + +C + F TE ++ L
Sbjct: 364 CSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC 423
Query: 80 ---CEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI----------IP 126
C +G CRC G++G CE + S+ + I
Sbjct: 424 ECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSII 483
Query: 127 CLNGGRCKGVNKCRCPPGFLGDYCEIWQR----PYICPKPCKQGVCSAAR------TCAC 176
C G C +C C + Q C + Q R C C
Sbjct: 484 CSGLGDCVC-GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRC 542
Query: 177 YEGWFGRTCSQRSDSG 192
+ G+ G C +
Sbjct: 543 HPGFEGSACQCERTTE 558
Score = 32.4 bits (73), Expect = 0.13
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 19 GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTE-KCLNGGKCVQK-DTCECQKGF 75
+ + G C ++D+ C + + + +CV D C F
Sbjct: 628 LQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPDGCGENLYF 686
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 72.2 bits (178), Expect = 3e-16
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 17/109 (15%)
Query: 57 CLNGGKCVQKD---TCECQKGFYGLRCEFS--KCII-PCLNGGRCK-GVN--KCRCPPGF 107
C + GKC+ C+C +G+ G RCE +C+ PC N C + +C C PG+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 108 LGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
G +CE+ +C PCL+ GRC +N +C CP GF G C++
Sbjct: 75 EGVHCEV----NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 68.0 bits (167), Expect = 1e-14
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEFCI--CTEK-CLNGGKCVQKD---TCECQKGF 75
C + GKC+ C+C +G+ G RCE + C C N C+ + C C G+
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 76 YGLRCEFSK--CII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
G+ CE + C PCL+ GRC +N +C CP GF G C++
Sbjct: 75 EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQV 119
Score = 57.2 bits (139), Expect = 1e-10
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 88 PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCR 140
PC + G+C + +C+C G+ G CEI +++C+ PC N C + +C
Sbjct: 14 PCEHAGKCINTLGSFECQCLQGYTGPRCEI----DVNECVSNPCQNDATCLDQIGEFQCI 69
Query: 141 CPPGFLGDYCEIWQRPYICPKPCK-QGVCS---AARTCACYEGWFGRTCSQRSD 190
C PG+ G +CE+ PC G C C C G+ G C
Sbjct: 70 CMPGYEGVHCEV-NTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 75.5 bits (185), Expect = 5e-16
Identities = 46/199 (23%), Positives = 59/199 (29%), Gaps = 27/199 (13%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD-TCECQKGFYGLR 79
L + C+ +G C +CT C+N G C + C C GF G
Sbjct: 171 YIGGNLFTSAFTRLIVRRCEAQKWGPECN-HLCTA-CMNNGVCHEDTGECICPPGFMGRT 228
Query: 80 CEFS--------------KCIIPCLNGGRCKGVN-KCRCPPGFLGDYCEIWQRPYIS--- 121
CE + C + C C C G+ G C P
Sbjct: 229 CEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPD 288
Query: 122 -KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVC----SAARTCAC 176
K C NG C C C PG+ G CE P + PK S C
Sbjct: 289 CKLRCSCNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPIC 348
Query: 177 Y-EGWFGRTCSQRSDSGED 194
GW T + + D
Sbjct: 349 KASGWPLPTNEEMTLVKPD 367
Score = 67.4 bits (164), Expect = 3e-13
Identities = 40/192 (20%), Positives = 56/192 (29%), Gaps = 21/192 (10%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
S I + ++ Q G+ L + C+ +G
Sbjct: 138 SFIHSVPRHEVPDILEVHLPHAQPQDAGVYS--ARYIGGNLFTSAFTRLIVRRCEAQKWG 195
Query: 78 LRCEFSKCIIPCLNGGRC-KGVNKCRCPPGFLGDYCEIWQRP--YISKCIIPCLNGGRCK 134
C C+N G C + +C CPPGF+G CE + C C CK
Sbjct: 196 PECN--HLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCK 253
Query: 135 GV-------NKCRCPPGFLGDYCEIWQRPYICPKPCKQ-------GVCSAARTCACYEGW 180
C C G+ G C P CK +C + C C GW
Sbjct: 254 SYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGW 313
Query: 181 FGRTCSQRSDSG 192
G C +
Sbjct: 314 QGLQCEREGIPR 325
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 72.0 bits (176), Expect = 1e-14
Identities = 36/186 (19%), Positives = 47/186 (25%), Gaps = 36/186 (19%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEF----------CICTEKCLNGGKCVQKDTCE 70
C G+C+ C C +G E C G+C C
Sbjct: 491 GQPVCSQRGECL-CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC-GDCL 548
Query: 71 CQKGFYGLRCEFSKCIIPCL--NGGRCKGVNKCRC------PPGFLGDYCEIWQRPYISK 122
C + G C + C+ NG C G KC C PG GD CE
Sbjct: 549 CDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEK-----CPT 603
Query: 123 CIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFG 182
C C C C G + C + G
Sbjct: 604 CPDACTFKKEC-----VECKKFDRGALHDENTCNRYCRDEIESV------KELKDTGKDA 652
Query: 183 RTCSQR 188
C+ +
Sbjct: 653 VNCTYK 658
Score = 66.3 bits (161), Expect = 1e-12
Identities = 34/198 (17%), Positives = 51/198 (25%), Gaps = 28/198 (14%)
Query: 21 CTEKCLNGGKCVQKDTCEC----QKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFY 76
CLN +C + + + C ++ +
Sbjct: 370 FNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429
Query: 77 GLRCEFS------KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI------ 124
C+ + C NG CRC PG+LG CE + Y
Sbjct: 430 TFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 125 ---IPCLNGGRCKGVNKCRCPPGFLGDYCE------IWQRPYICPKPCKQ-GVCSAARTC 174
C G C +C C G + + C G CS C
Sbjct: 490 EGQPVCSQRGECLC-GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG-DC 547
Query: 175 ACYEGWFGRTCSQRSDSG 192
C W G C+ + +
Sbjct: 548 LCDSDWTGYYCNCTTRTD 565
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 66.3 bits (162), Expect = 5e-14
Identities = 41/147 (27%), Positives = 55/147 (37%), Gaps = 40/147 (27%)
Query: 25 CLNGGKCVQKD-----TCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
C NGG C+ +CEC GF C + E + + C
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVV--EVASDEEEPTSAGPCTPN------- 58
Query: 80 CEFSKCIIPCLNGGRCKGVN----------KCRCPPGFLGDYCEIWQRPYISKCII-PCL 128
PC NGG C+ C+CP GF G +C+ I++C + PC
Sbjct: 59 --------PCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH----NINECEVEPCK 106
Query: 129 NGGRCK-GVN--KCRCPPGFLGDYCEI 152
NGG C V C CP F+G C+
Sbjct: 107 NGGICTDLVANYSCECPGEFMGRNCQY 133
Score = 54.0 bits (130), Expect = 1e-09
Identities = 36/131 (27%), Positives = 47/131 (35%), Gaps = 29/131 (22%)
Query: 88 PCLNGGRCKGVN-----KCRCPPGFLGDYCEIWQRPYISKCII---------PCLNGGRC 133
PC NGG C C CP GF C + PC NGG C
Sbjct: 7 PCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTC 66
Query: 134 KGVN----------KCRCPPGFLGDYCEIWQRPYICPKPCK-QGVCS---AARTCACYEG 179
+ C+CP GF G +C+ +PCK G+C+ A +C C
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGFNGIHCQH-NINECEVEPCKNGGICTDLVANYSCECPGE 125
Query: 180 WFGRTCSQRSD 190
+ GR C +
Sbjct: 126 FMGRNCQYKGG 136
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEFCI 52
C NGG C +CEC F G C++
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGRNCQYKG 135
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 61.4 bits (148), Expect = 4e-11
Identities = 27/127 (21%), Positives = 37/127 (29%), Gaps = 17/127 (13%)
Query: 31 CVQKDTCECQKGFYGLRCEFCI--CTEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKC 85
K TCEC+ G C C + + G + C +
Sbjct: 309 DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDN 368
Query: 86 I-IPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC-KGVNKCRCPP 143
+ C NGG C +C CP + G CE K C G C + P
Sbjct: 369 ELLHCQNGGTCHNNVRCLCPAAYTGILCE--------KL--RCEEAGSCGSDSGQGAPPH 418
Query: 144 GFLGDYC 150
G +
Sbjct: 419 GTHHHHH 425
Score = 50.6 bits (120), Expect = 1e-07
Identities = 29/132 (21%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 31 CVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD----TCECQKGFYGLRCEFSKCI 86
+ D + FY + KC D TCEC+ G C KC
Sbjct: 273 EIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCG--KCK 330
Query: 87 -----IPCLNGGRCKGVN--KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
P G C P ++ C NGG C +C
Sbjct: 331 KNYQGRPWSPGSYLPIPKGAANACIPSISSIGTN-----VCDNELLHCQNGGTCHNNVRC 385
Query: 140 RCPPGFLGDYCE 151
CP + G CE
Sbjct: 386 LCPAAYTGILCE 397
Score = 39.8 bits (92), Expect = 5e-04
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 25 CLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD-TCECQKGFYGLRC 80
C NGG C C C + G+ CE +C G C G +
Sbjct: 373 CQNGGTCHNNVRCLCPAAYTGILCEKL----RCEEAGSCGSDSGQGAPPHGTHHHHH 425
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 59.2 bits (142), Expect = 5e-11
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 37 CECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCK 96
C G+ G + Q + C+ ++C C NGG C
Sbjct: 107 FPCLGXQDGVAAFEVDVIVMNSEGNTILXT----PQNAIFFKTCQQAECPGGCRNGGFCN 162
Query: 97 GVNKCRCPPGFLGDYCE 113
C CP GF G +CE
Sbjct: 163 ERRICECPDGFHGPHCE 179
Score = 53.4 bits (127), Expect = 6e-09
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
G + Q + C+ C C NGG C ++ CEC GF+G C
Sbjct: 123 VIVMNSEGNTILXT----PQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHC 178
Query: 81 EFSKC 85
E +K
Sbjct: 179 EGTKH 183
Score = 51.1 bits (121), Expect = 3e-08
Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 10/102 (9%)
Query: 50 FCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLG 109
+ + V + C G+ I+ G
Sbjct: 88 VNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXT----PQNAIFF 143
Query: 110 DYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE 151
C ++C C NGG C C CP GF G +CE
Sbjct: 144 KTC------QQAECPGGCRNGGFCNERRICECPDGFHGPHCE 179
Score = 43.0 bits (100), Expect = 2e-05
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 11 MTILLFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKC 57
+ C C NGG C ++ CEC GF+G CE
Sbjct: 141 IFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTKHHHHH 187
Score = 39.9 bits (92), Expect = 3e-04
Identities = 19/137 (13%), Positives = 30/137 (21%), Gaps = 29/137 (21%)
Query: 52 ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDY 111
+ + L+ G G + PCL +
Sbjct: 72 FLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDV-------- 123
Query: 112 CEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQ-GVCSA 170
I+ G + CP C+ G C+
Sbjct: 124 ------------IVMNSEGNTILXTP--------QNAIFFKTCQQAECPGGCRNGGFCNE 163
Query: 171 ARTCACYEGWFGRTCSQ 187
R C C +G+ G C
Sbjct: 164 RRICECPDGFHGPHCEG 180
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 56.5 bits (136), Expect = 2e-09
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
+ C+ C NG C C C G+ G C C C +GG CV+ + C C+KG+ G
Sbjct: 392 TSECSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLG 450
Query: 78 LRCE 81
+CE
Sbjct: 451 PQCE 454
Score = 55.8 bits (134), Expect = 3e-09
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 93 GRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEI 152
G C KC C PG+ GD+C +KC C +GG C NKC C G+LG CE
Sbjct: 402 GYCTPTGKCCCSPGWEGDFCRT------AKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
Query: 153 WQR 155
Sbjct: 456 VDH 458
Score = 54.2 bits (130), Expect = 1e-08
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 112
C+ C NG C C C G+ G C +KC C +GG C NKC C G+LG C
Sbjct: 395 CSRLCRNG-YCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQC 453
Query: 113 EIWQR 117
E
Sbjct: 454 EQVDH 458
Score = 49.6 bits (118), Expect = 3e-07
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 91 NGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 150
NG K V+ R + S+C C NG C KC C PG+ GD+C
Sbjct: 363 NGKLYKIVDPKRPLMPEECRATVQPAQTLTSECSRLCRNG-YCTPTGKCCCSPGWEGDFC 421
Query: 151 EIWQRPYICPKPCKQ-GVCSAARTCACYEGWFGRTCSQ 187
+ C C+ GVC C C +G+ G C Q
Sbjct: 422 RTAK----CEPACRHGGVCVRPNKCLCKKGYLGPQCEQ 455
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 52.7 bits (127), Expect = 4e-09
Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 21/127 (16%)
Query: 25 CLNGGKC---VQKDTCECQKGFYGLRCEFCI--CTEK-CLNGGKCVQKD---TCECQKGF 75
C+ ++ + K C C N GKC TC C +GF
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 76 YGLRCE---FSKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYISKCI-IPC 127
G CE C + C N C C G+ PC
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK----ACIPTGPYPC 127
Query: 128 LNGGRCK 134
+
Sbjct: 128 GKQTLER 134
Score = 52.3 bits (126), Expect = 6e-09
Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 18/110 (16%)
Query: 57 CLNGGKC---VQKDTCECQKGFYGLRCEF--SKCII-PCLNGGRCK-GVN--KCRCPPGF 107
C+ ++ + K +C PC N G+CK G+ C C GF
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 108 LGDYCEIWQRPYISKC--IIPCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
G CE+ + K + C N C C G+
Sbjct: 72 EGKNCEL----FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGK 117
Score = 48.4 bits (116), Expect = 1e-07
Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 15/114 (13%)
Query: 88 PCLNGGRCKGV---NKCRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCR 140
C+ +C PC N G+CK G+ C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKD----GDQCETSPCQNQGKCKDGLGEYTCT 66
Query: 141 CPPGFLGDYCEIWQRPYICPKPCK-QGVCS---AARTCACYEGWFGRTCSQRSD 190
C GF G CE++ R C + C+C G+ +
Sbjct: 67 CLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI 120
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 51.6 bits (124), Expect = 1e-08
Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 69 CECQKGFYGLRCEFSKC---IIPCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRPYISK 122
+K + PCLNGG CK +N +C C GF G CE+ I
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 123 CIIPCLNGGRCKGVN---KCRCPPGFLGDYCEI 152
G + C C G+ +
Sbjct: 93 G---RCKQFCKTGADSKVLCSCTTGYRLAPDQK 122
Score = 51.2 bits (123), Expect = 2e-08
Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 15/115 (13%)
Query: 37 CECQKGFYGLRCEFCICTEK---CLNGGKCVQKD---TCECQKGFYGLRCEFSK---CII 87
+K + + CLNGG C C CQ GF G CE
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKN 92
Query: 88 PCLNGGRCKGVN---KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKC 139
G + C C G+ + +P + PC
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF---PCGRVSVSHSPTTL 144
Score = 43.9 bits (104), Expect = 6e-06
Identities = 21/89 (23%), Positives = 25/89 (28%), Gaps = 12/89 (13%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEFCI--CTEKCLNGGKCVQKD----TCECQKGF 75
CLNGG C C CQ GF G CE + C C C G+
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGY 115
Query: 76 YGLRCEFS--KCI-IPCLNGGRCKGVNKC 101
+ S + PC
Sbjct: 116 RLAPDQKSCKPAVPFPCGRVSVSHSPTTL 144
Score = 43.1 bits (102), Expect = 1e-05
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 101 CRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQRP 156
+ +C PCLNGG CK +N +C C GF G CE+
Sbjct: 33 ENTEKTNEFWKQYV----DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATC 88
Query: 157 YICPKPCKQGVCS---AARTCACYEGWFGRTCSQ 187
I CKQ + + C+C G+ +
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK 122
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 50.9 bits (122), Expect = 4e-08
Identities = 26/130 (20%), Positives = 36/130 (27%), Gaps = 20/130 (15%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEFCI---CTEK-CLNGGKCVQKD---TCECQKG 74
C N GKC TC C +GF G CE C+ C ++ C C +G
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
Query: 75 FYGLRCEFS--KCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISKCII-PC 127
+ + PC + V + G D + P
Sbjct: 110 YTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKP---YDAADLDPT 166
Query: 128 LNGGRCKGVN 137
N N
Sbjct: 167 ENPFDLLDFN 176
Score = 49.8 bits (119), Expect = 1e-07
Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 18/140 (12%)
Query: 63 CVQKDTCECQKGFYGLRCEF--SKCII-PCLNGGRCK-GVN--KCRCPPGFLGDYCEIWQ 116
++ + K +C PC N G+CK G+ C C GF G CE+
Sbjct: 21 EAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCEL-- 78
Query: 117 RPYISKCII-PCLNGGRCKGVN---KCRCPPGFLGDYCEIWQRPYICPKPCKQGVC---- 168
C + C C C G+ P P PC +
Sbjct: 79 -FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP-TGPYPCGKQTLERRK 136
Query: 169 SAARTCACYEGWFGRTCSQR 188
+ G + + +
Sbjct: 137 RSVAQATSSSGEAPDSITWK 156
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 46.6 bits (111), Expect = 7e-07
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 22/110 (20%)
Query: 61 GKCVQKDTCE----CQKGFYGLRCEF--SKCII-PCLNGGRCK-GVN--KCRCPPGFLGD 110
+C ++ E ++ +C PC NGG CK + C C P F G
Sbjct: 20 EQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Query: 111 YCEIWQRPYISKCII-PCLNGGRCKGVN-------KCRCPPGFLGDYCEI 152
CE + +I NGG + + CRC G+ +
Sbjct: 80 NCET----HKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGV 125
Score = 34.6 bits (80), Expect = 0.010
Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEFCI--CTEK-CLNGG---KCVQKD----TCEC 71
C NGG C + C C F G CE NGG C +C C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRC 114
Query: 72 QKGFYGLRCEFSKCIIPC 89
+G+ L S P
Sbjct: 115 HEGYSLLADGVS--CTPT 130
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 44.7 bits (105), Expect = 1e-05
Identities = 28/183 (15%), Positives = 40/183 (21%), Gaps = 35/183 (19%)
Query: 37 CECQKGFYGLRCEFCICTEKCLNGGKCVQK-DTCECQKGFYGLRCEFSKCIIPCLNGGRC 95
CQ G CE C D C+ + I
Sbjct: 346 DNCQHNTMGRNCEQCKP---FYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSV 402
Query: 96 KGVN-KCRCPPGFLGDYCEI-------WQRPYISKCIIP-------CLNGGRCKGVN-KC 139
+ +CRC G+ C++ C G C C
Sbjct: 403 GLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYC 462
Query: 140 RCPPGFLGDYCEI----WQRPYICPKPCKQGVCSAART-----------CACYEGWFGRT 184
C G C+ C+ C C+C GR
Sbjct: 463 YCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQ 522
Query: 185 CSQ 187
C++
Sbjct: 523 CNE 525
Score = 35.1 bits (80), Expect = 0.017
Identities = 26/167 (15%), Positives = 42/167 (25%), Gaps = 23/167 (13%)
Query: 31 CVQKDTCECQKGFYGLRCEFCI--CTEKCLNGGKCVQKDTCE-CQKGFYGLRCEFSK--- 84
+ C C+ GL CE C+ + + + C+ C + C F
Sbjct: 275 GMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVF 334
Query: 85 CIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN-KCRCPP 143
++GG C C +G CE P + + C P
Sbjct: 335 LATGNVSGGVC-----DNCQHNTMGRNCE---------QCKPFYFQHPERDIRDPNLCEP 380
Query: 144 GFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSD 190
G+ + C C G C +
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAG--QCRCKLHVEGERCDVCKE 425
Score = 31.6 bits (71), Expect = 0.24
Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 14/140 (10%)
Query: 51 CICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK---CIIPCLNGGRCKGVNKCRCPPGF 107
C + + + C C+ GL CE +P +C
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNE 322
Query: 108 LGDYCEIWQRPYISKCIIPCLNGGRCK-------GVNKCRCPPGFLGDYCEIWQRPYIC- 159
C +++ ++GG C G N +C P + + P +C
Sbjct: 323 HSSSCHFDMAVFLATG---NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCE 379
Query: 160 PKPCKQGVCSAARTCACYEG 179
P C C Y
Sbjct: 380 PCTCDPAGSENGGICDGYTD 399
Score = 29.3 bits (65), Expect = 1.2
Identities = 28/149 (18%), Positives = 42/149 (28%), Gaps = 43/149 (28%)
Query: 19 GICTEKCLNGGKCVQKDTCECQKGFYGLR------CEFCICTEKC--LNGGKCVQKD-TC 69
G+ +C + C++GFY L C+ C C G C + C
Sbjct: 403 GLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYC 462
Query: 70 ECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPC-- 127
C++ G RC+ +C P W PC
Sbjct: 463 YCKRLVTGQRCD--------------------QCLPQH-------WGLSNDLDGCRPCDC 495
Query: 128 ----LNGGRCKGVN-KCRCPPGFLGDYCE 151
C + +C C P +G C
Sbjct: 496 DLGGALNNSCSEDSGQCSCLPHMIGRQCN 524
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 41.3 bits (97), Expect = 2e-05
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 94 RCKGVNKCRCPPGFLGDYCEIWQRPYISKCII-PCLNGGRCKGVNK-----CRCPPGFLG 147
R V C C G + + C C NGG C+ C+CP GF G
Sbjct: 27 RSNRVEYCWCNSGRAQCHSV-----PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAG 81
Query: 148 DYCEI 152
CEI
Sbjct: 82 KSCEI 86
Score = 35.9 bits (83), Expect = 0.001
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 69 CECQKGFYGLRC-EFSKCII-PCLNGGRCKGVNK-----CRCPPGFLGDYCEI 114
C C G C C NGG C+ C+CP GF G CEI
Sbjct: 34 CWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 86
Score = 30.1 bits (68), Expect = 0.18
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 18/93 (19%)
Query: 100 KCRCPPGFLGDYC---EIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRP 156
+ C + W RP + R V C C G + +
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPVL-----------RSNRVEYCWCNSGRAQCHSVPVKSC 51
Query: 157 YICP----KPCKQGVCSAARTCACYEGWFGRTC 185
C+Q + + C C EG+ G++C
Sbjct: 52 SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84
Score = 27.1 bits (60), Expect = 1.8
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 25 CLNGGKCVQKD-----TCECQKGFYGLRCE 49
C NGG C Q C+C +GF G CE
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 21 CTEKCLNGGKCVQKD---TCECQKGFYGLRCEFCICTEKCL-----NGGKCVQKD---TC 69
C C G C+ +C+C+ G+ G C+ + C C+++ C
Sbjct: 18 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRC 77
Query: 70 ECQKGFYGLRCEFSKCI----IPCLNGGRCK 96
C G+ C PC +
Sbjct: 78 SCAPGYKLGDDLLQ-CHPAVKFPCGRPWKRM 107
Score = 37.4 bits (87), Expect = 8e-04
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 18/96 (18%)
Query: 30 KCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKCI 86
K V D C C C G C+ +C+C+ G+ G C+
Sbjct: 2 KHVDGDQCLVLP-------LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF 54
Query: 87 I-----PCLNGGRCKGVN---KCRCPPGFLGDYCEI 114
+ C +C C PG+ +
Sbjct: 55 LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90
Score = 37.0 bits (86), Expect = 9e-04
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 62 KCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRP 118
K V D C C C G C G C C G+ G +C+ +
Sbjct: 2 KHVDGDQCLVLP-------LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQR-EVS 53
Query: 119 YISKCIIPCLNGGRCKGVN---KCRCPPGFLGDYCEI 152
+++ + C +C C PG+ +
Sbjct: 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 109 GDYCEIWQRPYISKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYIC-PKPCK 164
GD C + P C C G C G C C G+ G +C+ C
Sbjct: 6 GDQCLV--LPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGG 63
Query: 165 -QGVCS---AARTCACYEGWFGRTCSQ 187
C R C+C G+
Sbjct: 64 CTHYCLEEVGWRRCSCAPGYKLGDDLL 90
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 37.1 bits (87), Expect = 2e-04
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 88 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 114
PCLNGG CK +N +C CP GF G CE+
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 37.1 bits (87), Expect = 2e-04
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 126 PCLNGGRCK-GVN--KCRCPPGFLGDYCEI 152
PCLNGG CK +N +C CP GF G CE+
Sbjct: 10 PCLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 29.0 bits (66), Expect = 0.13
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 25 CLNGGKCVQKD---TCECQKGFYGLRCEF 50
CLNGG C C C GF G CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
Score = 29.0 bits (66), Expect = 0.13
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 57 CLNGGKCVQKD---TCECQKGFYGLRCEF 82
CLNGG C C C GF G CE
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGKNCEL 39
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 40.0 bits (93), Expect = 3e-04
Identities = 33/139 (23%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C G C C G+ G CE C G+ Q+ C+K
Sbjct: 94 DRSLCHGKGFLECG-ICRCDTGYIGKNCE-------CQTQGRSSQELEGSCRKD------ 139
Query: 81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGV---- 136
I C G C +C C + Q NG C G
Sbjct: 140 ---NNSIICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGL 195
Query: 137 ---NKCRCPPGFLGDYCEI 152
KCRC PGF G C+
Sbjct: 196 CFCGKCRCHPGFEGSACQH 214
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 39.3 bits (92), Expect = 6e-04
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 88 PCLNGGRCK---GVNKCRCPPGFLGDYCEIWQRPYISK----CIIPCLNGGRCKGVNKCR 140
PCL+ G C+ C C PG+ G CE+ + + C CL G C
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYT---CS 68
Query: 141 CPPGF 145
C G+
Sbjct: 69 CAQGY 73
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 22 TEKCLNGGKCVQKD---TCECQKGFYGLRCEFCICTEKCLNGGKCVQ-------KDTCEC 71
++ CL+ G C TC C G+ G CE C TC C
Sbjct: 10 SQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSC 69
Query: 72 QKGFYGLRCEFSKCIIPCLNGGRC 95
+G+ G
Sbjct: 70 AQGYRLGEDHKQCVPHDQCACGVL 93
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 33 QKDTCECQKGFYGLRCEF-CICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLN 91
Q + Q+ + C + C G+CVQ +C C + + GL C+ + +P
Sbjct: 516 QPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETSLPTQL 574
Query: 92 GGR----CKGVNKCRCPPGFLGDYC 112
N G L C
Sbjct: 575 KDNFNRAPSNQNWLTVSGGKLSTVC 599
Score = 37.3 bits (85), Expect = 0.004
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 65 QKDTCECQKGFYGLRCEFS-KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKC 123
Q + Q+ + C+ C GRC C C + G YC+ + ++
Sbjct: 516 QPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETSLPTQL 574
Query: 124 IIPCLNGGRCKGVNKCRCPPGFLGDYC 150
N G L C
Sbjct: 575 KDNFNRA--PSNQNWLTVSGGKLSTVC 599
Score = 34.6 bits (78), Expect = 0.028
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 15 LFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGK----CVQKDTCE 70
+++ C + C G+CVQ +C C + + GL C+ + ++
Sbjct: 531 VYIGDGCLDMCSGHGRCVQ-GSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLT 589
Query: 71 CQKGFYGLRCEFSKCIIPCLNGGRCKG 97
G C + G C
Sbjct: 590 VSGGKLSTVCGAVASGLALHFSGGCSR 616
Score = 32.7 bits (73), Expect = 0.12
Identities = 19/73 (26%), Positives = 25/73 (34%)
Query: 120 ISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEG 179
+C C G C KC C PG+ G C+I + K +G + R G
Sbjct: 185 GPQCEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDFLKDDFEGQLESDRFLLMSGG 244
Query: 180 WFGRTCSQRSDSG 192
R C S
Sbjct: 245 KPSRKCGILSSGN 257
Score = 31.2 bits (69), Expect = 0.39
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 84 KCIIPCLNGGRCKGVNKCRCPPGFLGDYCEI 114
+C C G C KC C PG+ G C+I
Sbjct: 187 QCEEMCYGHGSCINGTKCICDPGYSGPTCKI 217
Score = 30.8 bits (68), Expect = 0.52
Identities = 20/151 (13%), Positives = 33/151 (21%), Gaps = 19/151 (12%)
Query: 69 CECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPG------------FLGDYCEIWQ 116
C Y + E+S ++ G C P + D W
Sbjct: 442 CSVTDSCYAIELEYS------VDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWT 495
Query: 117 RPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCAC 176
R + R + ++ C C +C C
Sbjct: 496 RITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGD-GCLDMCSGHGRCVQGSCVC 554
Query: 177 YEGWFGRTCSQRSDSGEDKSTFYHDDEEGPP 207
E W G C + S + +
Sbjct: 555 DEQWGGLYCDEPETSLPTQLKDNFNRAPSNQ 585
Score = 30.8 bits (68), Expect = 0.54
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 159 CPKPC-KQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLG 217
C + C G C C C G+ G TC + + F DD EG + + + G
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNP----DFLKDDFEGQLESDRFLLMSG 243
Query: 218 SDSGEDKSTF 227
Sbjct: 244 GKPSRKCGIL 253
Score = 29.2 bits (64), Expect = 1.3
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 15 LFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFC 51
+++ C E C G C+ C C G+ G C+
Sbjct: 182 VYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKIS 218
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 53 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK 84
C E C G C+ C C G+ G C+ S
Sbjct: 188 CEEMCYGHGSCINGTKCICDPGYSGPTCKIST 219
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 37.5 bits (86), Expect = 0.004
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 15 LFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCL--NGGKCVQKDTCECQ 72
LFV G + + + ++ F G + + + L + G+ D
Sbjct: 123 LFVGG-LPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNS 181
Query: 73 KGFYGLRCEFSKCIIPCLNGGRCKGVN---KCRCP-PGFLGDYCEIWQRPYIS 121
G CLNGG C V+ C C GF G C + YI+
Sbjct: 182 GGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIA 234
Score = 32.9 bits (74), Expect = 0.11
Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 8/99 (8%)
Query: 65 QKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI 124
+ ++ F G + L + P G CE +
Sbjct: 140 TLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGG--- 196
Query: 125 IPCLNGGRCKGVN---KCRCP-PGFLGDYCEIWQRPYIC 159
CLNGG C V+ C C GF G C + YI
Sbjct: 197 -VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIA 234
Score = 27.9 bits (61), Expect = 4.1
Identities = 8/64 (12%), Positives = 14/64 (21%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG 77
+ + G ++ F G ++ K D CE F
Sbjct: 773 TRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGF 832
Query: 78 LRCE 81
Sbjct: 833 RNII 836
Score = 27.5 bits (60), Expect = 5.9
Identities = 9/29 (31%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 88 PCLNGGRCKGVN---KCRCP-PGFLGDYC 112
C N G C C C F G C
Sbjct: 1024 SCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
Score = 27.5 bits (60), Expect = 5.9
Identities = 9/29 (31%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 126 PCLNGGRCKGVN---KCRCP-PGFLGDYC 150
C N G C C C F G C
Sbjct: 1024 SCSNQGVCLQQWDGFSCDCSMTSFSGPLC 1052
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 9/122 (7%)
Query: 35 DTCECQKGFYGLRCEFCI----CTEKCLNGGKCVQKDTCECQKGFYGLRCEFS--KCIIP 88
+ G + I + +Q+ + + +GL + C
Sbjct: 138 EPTVYYTGDFEEWTRITIAIPRSLASSKTRFRWIQESSSQKNVPPFGLDGVYISEPCPSY 197
Query: 89 CLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGD 148
C G C C C G+ + G + G +G
Sbjct: 198 CSGHGDCIS-GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLS--PLWYKITGGQVGT 254
Query: 149 YC 150
C
Sbjct: 255 GC 256
Score = 31.9 bits (71), Expect = 0.16
Identities = 11/81 (13%), Positives = 17/81 (20%), Gaps = 4/81 (4%)
Query: 119 YISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYE 178
C C G C C C G+ P + + +
Sbjct: 190 ISEPCPSYCSGHGDCIS-GVCFCDLGYTAAQGTCVSN---TPNHSEMFDRFEGKLSPLWY 245
Query: 179 GWFGRTCSQRSDSGEDKSTFY 199
G + D + Y
Sbjct: 246 KITGGQVGTGCGTLNDGRSLY 266
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 34.6 bits (79), Expect = 0.011
Identities = 32/159 (20%), Positives = 40/159 (25%), Gaps = 27/159 (16%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEK-----------CLNGGKCVQKDTC 69
+C N C Q C + G C+ C C N C Q C
Sbjct: 8 SNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYC 67
Query: 70 ECQKGFYGLRCEFSKCIIP-----------CLNGGRCKGVNKCRCPPGFLGDYCEIWQRP 118
+ G C+ C C N C C F G C+
Sbjct: 68 GFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACS 127
Query: 119 YISKCII-----PCLNGGRCKGVNKCRCPPGFLGDYCEI 152
C C N C C PG+ G C+
Sbjct: 128 TDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQS 166
Score = 34.2 bits (78), Expect = 0.018
Identities = 30/167 (17%), Positives = 38/167 (22%), Gaps = 24/167 (14%)
Query: 47 RCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGV-------- 98
RC +C N C Q C + G C+ C G + G
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCC 61
Query: 99 --------NKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 150
C G G C + C N C C F G C
Sbjct: 62 SQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGC 121
Query: 151 EIWQRPYICPKPCK--------QGVCSAARTCACYEGWFGRTCSQRS 189
+ P CS +C G+ G C
Sbjct: 122 QSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGG 168
Score = 27.7 bits (61), Expect = 2.6
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEK-----------CLNGGKCVQK 66
S + C N C Q C F G C+ C+ C N C +
Sbjct: 91 SQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKW 150
Query: 67 DTCECQKGFYGLRCEFSKC 85
+C G+ G C+ C
Sbjct: 151 GSCGIGPGYCGAGCQSGGC 169
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 35.3 bits (80), Expect = 0.017
Identities = 30/169 (17%), Positives = 45/169 (26%), Gaps = 12/169 (7%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGK-CVQKDTC-ECQKGF 75
+G E+C C + C+ C +CL C C+ +
Sbjct: 175 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGL--CCHSECLGNCSQPDDPTKCVACRNFY 232
Query: 76 YGLRCEFSKCIIPC--LNGGRCKGVNKCR-CPPGFLGDYCEIWQRPYI--SKCIIPCLNG 130
RC C P RC + C+ + + I +KCI C +G
Sbjct: 233 LDGRCV-ETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSG 291
Query: 131 GRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEG 179
N C P G ++ R C G
Sbjct: 292 YTMNSSNLL-CTPCL-GPCPKVCHLLEGEKTIDSVTSAQELRGCTVING 338
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 34.2 bits (78), Expect = 0.029
Identities = 18/109 (16%), Positives = 25/109 (22%), Gaps = 18/109 (16%)
Query: 99 NKCRCPPGFLGDYCEIWQRPYISKCI--------IPCLNGGRCKGVNK-----CRCPPGF 145
K C + +Y + P+I C GRC P
Sbjct: 310 TKESCQ--AIKEYMDTTLGPFILNVTSGALLCSQALCSGHGRCVRRTSHPKALLLLNPAS 367
Query: 146 LGDYCEIWQRPYICPKPCKQGVCSAAR---TCACYEGWFGRTCSQRSDS 191
P + C CY GW C ++S
Sbjct: 368 FSIQLTPGGGPLSLRGALSLEDQAQMAVEFKCRCYPGWQAPWCERKSMW 416
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 30.9 bits (70), Expect = 0.034
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 57 CLNGGKC-----VQKDTCECQKGFYGLRCEFS 83
CLNGG C + TC C G+ G RC+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQTR 45
Score = 30.6 bits (69), Expect = 0.051
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 25 CLNGGKC-----VQKDTCECQKGFYGLRCEF 50
CLNGG C + TC C G+ G RC+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 29.8 bits (67), Expect = 0.096
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 88 PCLNGGRCKGVNK-----CRCPPGFLGDYCE 113
CLNGG C + C C G+ GD C+
Sbjct: 13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 29.8 bits (67), Expect = 0.096
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 126 PCLNGGRCKGVNK-----CRCPPGFLGDYCE 151
CLNGG C + C C G+ GD C+
Sbjct: 13 YCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 31.0 bits (70), Expect = 0.038
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 57 CLNGGKC-----VQKDTCECQKGFYGLRCEFS 83
CL+ G C + K C C G+ G RC++
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQYR 45
Score = 30.6 bits (69), Expect = 0.046
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 25 CLNGGKC-----VQKDTCECQKGFYGLRCEF 50
CL+ G C + K C C G+ G RC++
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
Score = 29.0 bits (65), Expect = 0.20
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 89 CLNGGRCKGVNK-----CRCPPGFLGDYCE 113
CL+ G C + C C G++G+ C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 29.0 bits (65), Expect = 0.20
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 127 CLNGGRCKGVNK-----CRCPPGFLGDYCE 151
CL+ G C + C C G++G+ C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 34.0 bits (77), Expect = 0.041
Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 126 PCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTC 185
PC C ++C F C + IC GVCS C C W G C
Sbjct: 424 PCGPQMMCLE-HRCLPVASFNFSTCLSSKEGTIC---SGNGVCSNELKCVCNRHWIGSDC 479
Query: 186 SQRSDSGEDKSTFYHDDEEGPPVRNLY 212
+ +D T G N +
Sbjct: 480 NTYFPHNDDAKTGITLSGNGVAGTNHH 506
Score = 28.2 bits (62), Expect = 3.0
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 56 KCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEI 114
C C++ C F C SK C G C KC C ++G C
Sbjct: 424 PCGPQMMCLEH-RCLPVASFNFSTCLSSKEGTICSGNGVCSNELKCVCNRHWIGSDCNT 481
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 34.2 bits (77), Expect = 0.042
Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 22/148 (14%)
Query: 35 DTCECQKGFYGLRCEF-CI---CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCL 90
D RC C+ T + Q + +C SKC+ PC
Sbjct: 13 DESLSAGSVQRARCASRCLSLQITRISAFF-QHFQNNGSLVWCQ-NHKQC--SKCLEPCK 68
Query: 91 NGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYC 150
G + ++C+ +CE +C+ C V + CP
Sbjct: 69 ESGDLRK-HQCQS-------FCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAP-----E 115
Query: 151 EIWQRPYICPKPC-KQGVCSAARTCACY 177
+ C + C CS + C
Sbjct: 116 KASGFAAACVESCEVDNECSGVKKCCSN 143
Score = 29.2 bits (64), Expect = 1.6
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C E C G + + + + C+ + + L V++ C + G
Sbjct: 63 CLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFA- 121
Query: 81 EFSKCIIPCLNGGRCKGVNKC 101
+ C+ C C GV KC
Sbjct: 122 --AACVESCEVDNECSGVKKC 140
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 31.0 bits (70), Expect = 0.044
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 43 FYGLRCEFCICTEKCLNGGKCV-------QKDTCECQKGFYGLRCEFS 83
F +C CLN C +CEC GF G RCE+
Sbjct: 2 FPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 30.3 bits (68), Expect = 0.067
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 25 CLNGGKCV-------QKDTCECQKGFYGLRCEF 50
CLN C +CEC GF G RCE+
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 29.5 bits (66), Expect = 0.13
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 75 FYGLRCEFSKCIIPCLNGGRC-------KGVNKCRCPPGFLGDYCE 113
F +C + CLN C V C C GF+G CE
Sbjct: 2 FPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 29.1 bits (65), Expect = 0.21
Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 22/58 (37%)
Query: 101 CRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRC-------KGVNKCRCPPGFLGDYCE 151
+CP F YC LN C V C C GF+G CE
Sbjct: 5 YKCPETFDAWYC---------------LNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 33.7 bits (77), Expect = 0.051
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 19/115 (16%)
Query: 20 ICTEKCLNGG---KCVQKDTCECQKGFYGLRCEFCICTEKCLNG---GKCVQ--KDTCEC 71
I K L+G C C FY +F + C + + C
Sbjct: 269 IKKSKALSGFSLQSCRHSIPVFCHSSFYH-DTDFLGEELDIVAAKSHEACQKLCTNAVRC 327
Query: 72 QKGFYGLRCEFSKCIIP--------CLNGGRCKGVNKCRCPPGFLGDYCEIWQRP 118
Q F+ + C NG K ++ G+ C++
Sbjct: 328 Q--FFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNEC 380
Score = 32.1 bits (73), Expect = 0.17
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 126 PCLNGG---RCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFG 182
L+G C+ C F D + + I C T A +F
Sbjct: 273 KALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSH-EACQKLCTNAVRCQFFT 331
Query: 183 RTCSQRSDSGEDKSTFYHDDEEGPPVRNLYSS 214
T +Q S + + G P + L+
Sbjct: 332 YTPAQASCNEGKGKCYLKLSSNGSPTKILHGR 363
Score = 31.0 bits (70), Expect = 0.44
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 21/140 (15%)
Query: 63 CVQKDTCECQKGFYGLRCEFSKCIIPCLNGG---RCKGVNKCRCPPGFLGDYCEIWQRPY 119
C+ K + G R + S L+G C+ C F D + +
Sbjct: 255 CLLKT---SESGLPSTRIKKS----KALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELD 307
Query: 120 I------SKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKP-----CKQGVC 168
I C C N RC+ + + + P + G+
Sbjct: 308 IVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGIS 367
Query: 169 SAARTCACYEGWFGRTCSQR 188
+ R
Sbjct: 368 GYTLRLCKMDNECTTKIKPR 387
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 32.5 bits (74), Expect = 0.056
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 21 CTEKCLNGGKCVQKD---TCECQKGFYGLRCEFCICTEK 56
C G+CV+ TC C G+YG +C+F +
Sbjct: 123 QPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQVDPR 161
Score = 30.9 bits (70), Expect = 0.21
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 53 CTEKCLNGGKCVQKD---TCECQKGFYGLRCEFSKC 85
C G+CV+ TC C G+YG +C+F +
Sbjct: 123 QPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVQV 158
Score = 29.8 bits (67), Expect = 0.52
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 116 QRPYI----SKCIIPCLNGGRCKGVN---KCRCPPGFLGDYCE 151
+ + S C G C + C C G+ G C+
Sbjct: 112 LKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 29.4 bits (66), Expect = 0.72
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 83 SKCIIPCLNGGRCKGVN---KCRCPPGFLGDYCE 113
S C G C + C C G+ G C+
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 26.7 bits (59), Expect = 6.1
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 10/42 (23%)
Query: 154 QRPYIC------PKPC-KQGVCSAAR---TCACYEGWFGRTC 185
+ +C P C G C TC C G++G C
Sbjct: 112 LKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 33.3 bits (75), Expect = 0.058
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 9/126 (7%)
Query: 19 GICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGL 78
G C+ C + + C C GF + C ++C + C Q C +G Y
Sbjct: 8 GGCSHVCNDLKIGYE---CLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEGGYKC 62
Query: 79 RCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNK 138
+CE L+ F + E+ + + R
Sbjct: 63 QCEEG----FQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 139 CRCPPG 144
Sbjct: 119 TEVASN 124
>3ca7_A Protein spitz; argos, EGF, developmental protein,
differentiation, EGF-like domain, endoplasmic
reticulum, glycoprotein, golgi apparatus; 1.50A
{Drosophila melanogaster} PDB: 3c9a_C 3ltg_D
Length = 52
Score = 29.9 bits (67), Expect = 0.085
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 43 FYGLRCEFCICTEKCLNGGKCVQKDT-------CECQKGFYGLRCEFS 83
F +C CLN C CEC GF G RCE+
Sbjct: 2 FPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK 49
Score = 29.5 bits (66), Expect = 0.11
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 25 CLNGGKCVQKDT-------CECQKGFYGLRCEF 50
CLN C CEC GF G RCE+
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
Score = 28.0 bits (62), Expect = 0.48
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 89 CLNGGRC-------KGVNKCRCPPGFLGDYCE 113
CLN C V C C GF+G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 28.0 bits (62), Expect = 0.48
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 7/32 (21%)
Query: 127 CLNGGRC-------KGVNKCRCPPGFLGDYCE 151
CLN C V C C GF+G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 31.9 bits (73), Expect = 0.089
Identities = 9/80 (11%), Positives = 14/80 (17%), Gaps = 6/80 (7%)
Query: 36 TCECQKGFYGLRCEFC---ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNG 92
CEC + C CE L+ + +
Sbjct: 25 ICECSSESTLDPTKTICIETIKGTCWQTVID---GRCEININGATLKSQCCSSLGAAWGS 81
Query: 93 GRCKGVNKCRCPPGFLGDYC 112
C G+
Sbjct: 82 PCTLCQVDPICGKGYSRIKG 101
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 32.9 bits (74), Expect = 0.098
Identities = 25/176 (14%), Positives = 39/176 (22%), Gaps = 26/176 (14%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFC--ICTEKCLNGGKCVQKDTC------ 69
+G E+C C + C+ C C C + C
Sbjct: 175 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD 234
Query: 70 -----ECQKGFYGLRCEFSKCIIPCLNG-GRCKGVNKCRCPPGFLGDYCEIWQRPYISKC 123
C +Y + C + +CK + C + + +KC
Sbjct: 235 GRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHN----------NKC 284
Query: 124 IIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEG 179
I C +G N P R C G
Sbjct: 285 IPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQEL--RGCTVING 338
Score = 32.1 bits (72), Expect = 0.14
Identities = 20/165 (12%), Positives = 37/165 (22%), Gaps = 13/165 (7%)
Query: 26 LNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYG------LR 79
G ++K+ C + + K ++ + G
Sbjct: 113 TRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPAT 172
Query: 80 CEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGG--RCKGV- 136
+ + C C+ V C + C P C+
Sbjct: 173 VINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFY 232
Query: 137 --NKC--RCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACY 177
+C CPP + C + S + C Y
Sbjct: 233 LDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQY 277
Score = 29.4 bits (65), Expect = 1.1
Identities = 16/136 (11%), Positives = 26/136 (19%), Gaps = 5/136 (3%)
Query: 58 LNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQR 117
G ++K+ C + + PG
Sbjct: 113 TRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPAT 172
Query: 118 PYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTC-AC 176
+ + C C+ V C C C Q C AC
Sbjct: 173 VINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSE--CLGNCSQ--PDDPTKCVAC 228
Query: 177 YEGWFGRTCSQRSDSG 192
+ C +
Sbjct: 229 RNFYLDGRCVETCPPP 244
Score = 26.7 bits (58), Expect = 9.1
Identities = 24/180 (13%), Positives = 36/180 (20%), Gaps = 19/180 (10%)
Query: 20 ICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
I K N K E+C C + C+
Sbjct: 145 IVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAE 204
Query: 80 CEF--SKCIIPCLNGGRCKGVNKCR-----------CPPGFLGDYCEIWQRPYISKCIIP 126
S+C+ C CR CPP + + W+ S C
Sbjct: 205 GLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHF--QDWRCVNFSFCQDL 262
Query: 127 CLNGGRCKGVNKCRCPPGFL-GDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTC 185
+CK + C + + C C
Sbjct: 263 H---HKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEK 319
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.9 bits (72), Expect = 0.20
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 45 GLRCEFCICTEK-CLNGGKCVQKD---TCECQK-GFYGLRCEFSKCIIPCLNGGRC 95
G C E C N G C+Q+ +C+C F G C GG
Sbjct: 180 GCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQ 235
Score = 30.4 bits (68), Expect = 0.54
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 18 SGICTEK-CLNGGKCVQKD---TCECQK-GFYGLRCEFCICTEKCLNGGKCV 64
S C E C N G C+Q+ +C+C F G C T GG +
Sbjct: 185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQI 236
Score = 28.8 bits (64), Expect = 1.7
Identities = 9/31 (29%), Positives = 9/31 (29%), Gaps = 4/31 (12%)
Query: 126 PCLNGGRC---KGVNKCRCP-PGFLGDYCEI 152
C N G C C C F G C
Sbjct: 192 SCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 222
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.9 bits (70), Expect = 0.21
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 69 CECQKGFYGLRCEFSKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCE 113
C +K C + C C G C C+C PGF G CE
Sbjct: 109 CSKKKLAL---CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 30.5 bits (69), Expect = 0.30
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 37 CECQKGFYGLRCEFCICTE-KCLNGGKCVQKD---TCECQKGFYGLRCEF 82
C +K C CT C G+CV+ TC+C GF GL+CE
Sbjct: 109 CSKKKLAL---CYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ 155
Score = 29.3 bits (66), Expect = 0.62
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 115 WQRPYI----SKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCE 151
++ + + C G C C+C PGF G CE
Sbjct: 111 KKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 29.3 bits (66), Expect = 0.64
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 20 ICTEKCLNGGKCVQKD---TCECQKGFYGLRCEFCI 52
C G+CV+ TC+C GF GL+CE +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.0 bits (69), Expect = 0.34
Identities = 23/173 (13%), Positives = 42/173 (24%), Gaps = 23/173 (13%)
Query: 18 SGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCI--CTEKCLNGGKCVQKDTCECQKGF 75
+ +C +C + C K E C C C C+ +
Sbjct: 168 NNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDND--TACVACRHYY 225
Query: 76 YGLRCE-------FSKCIIPCLNGGRCKGVNKC--RCPPGFLGDYCEIWQRPYISKCIIP 126
Y C + C++ C + GF+ + +C+
Sbjct: 226 YAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFV---------IHDGECMQE 276
Query: 127 CLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEG 179
C +G G C P + + C ++G
Sbjct: 277 CPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTS-AQMLQGCTIFKG 328
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.8 bits (69), Expect = 0.37
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 123 CIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWF- 181
++ N + +GVN C G C+ Y+C + S TCAC +G
Sbjct: 254 DMVLFHNLTQPRGVNWCERTTLSNGG-CQ-----YLCLPAPQINPHSPKFTCACPDGMLL 307
Query: 182 ---GRTC 185
R+C
Sbjct: 308 ARDMRSC 314
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 30.9 bits (69), Expect = 0.42
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 9/81 (11%)
Query: 37 CECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGF---YGLRCEFSK-CIIPCLNG 92
C C+ YG+ CE C+ + + EC C F +G
Sbjct: 274 CNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHG 333
Query: 93 GRCKGVNKCRCPPGFLGDYCE 113
G C C G CE
Sbjct: 334 GHC-----TNCRDNTDGAKCE 349
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 29.8 bits (67), Expect = 0.52
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 20 ICTEKCLNGGKCV---QKDTCECQKGFYGLRCEFCI 52
C G+C+ TC C GFYG CE+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVR 157
Score = 29.4 bits (66), Expect = 0.73
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 52 ICTEKCLNGGKCV---QKDTCECQKGFYGLRCEF 82
C G+C+ TC C GFYG CE+
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 155
Score = 28.6 bits (64), Expect = 1.3
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 116 QRPYI----SKCIIPCLNGGRCK---GVNKCRCPPGFLGDYCE 151
++ + S + C G C G C C PGF G CE
Sbjct: 112 KKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 28.2 bits (63), Expect = 1.5
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 80 CEFSKCI-IPCLNGGRCK---GVNKCRCPPGFLGDYCE 113
C + C + C G C G C C PGF G CE
Sbjct: 117 CYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
Score = 26.7 bits (59), Expect = 6.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 154 QRPYICPKP-CKQGVCSAARTCA---------CYEGWFGRTCSQRSDSGE 193
++ +C C+ CS C CY G++G C D +
Sbjct: 112 KKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDDD 161
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.4 bits (68), Expect = 0.57
Identities = 24/192 (12%), Positives = 39/192 (20%), Gaps = 13/192 (6%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
T+ C C G + T + G V CQ +
Sbjct: 228 TTDPNKRWELCDIPR-CTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWS--AQT 284
Query: 81 EFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCR 140
+ P + N CR P G +C + CK + C
Sbjct: 285 PHTHNRTPENFPCKNLDENYCRNPDGKRAPWC---------HTTNSQVRWEYCK-IPSCD 334
Query: 141 CPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGEDKSTFYH 200
P + G+ C S +
Sbjct: 335 SSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTP 394
Query: 201 DDEEGPPVRNLY 212
++ + Y
Sbjct: 395 ENYPNAGLTMNY 406
Score = 27.7 bits (61), Expect = 4.8
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 25/137 (18%)
Query: 45 GLRCEFCI---CTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNG-------GR 94
R ++C C E+C++ + + K GL C+ P +G +
Sbjct: 151 EKRYDYCDILECEEECMHC--SGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNK 208
Query: 95 CKGVNKCRCP------------PGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVN-KCRC 141
N CR P P + C+I + P + G N +
Sbjct: 209 NLKKNYCRNPDRELRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNV 268
Query: 142 PPGFLGDYCEIWQRPYI 158
G C+ W
Sbjct: 269 AVTVSGHTCQHWSAQTP 285
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 30.3 bits (67), Expect = 0.67
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 94 RCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE 151
+ C C C+ P +C G + CRC PG+LG CE
Sbjct: 426 IVQVTFDCDCA-------CQAQAEPNSHRC---NNGNGTFEC-GVCRCGPGWLGSQCE 472
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 27.4 bits (60), Expect = 0.95
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 88 PCLNGGRC--------KGVNKCRCPPGFLGDYCE 113
C+NGG C C+C PGF G C
Sbjct: 13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 27.4 bits (60), Expect = 0.95
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 8/34 (23%)
Query: 126 PCLNGGRC--------KGVNKCRCPPGFLGDYCE 151
C+NGG C C+C PGF G C
Sbjct: 13 FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 26.2 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 25 CLNGGKC--------VQKDTCECQKGFYGLRCE 49
C+NGG+C + C+CQ GF G RC
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 26.2 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 57 CLNGGKC--------VQKDTCECQKGFYGLRCE 81
C+NGG+C + C+CQ GF G RC
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 28.1 bits (63), Expect = 1.3
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 12/87 (13%)
Query: 36 TCECQKGFYGLRCEFCICTEKCLNGG---KCVQKD--TCECQKGFYGLRCEFSKCIIPCL 90
C C +GF + E C C C +CEC +G+ I C
Sbjct: 25 LCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDECE 84
Query: 91 NGGRCKG--VN-----KCRCPPGFLGD 110
NGG C G N +C C P
Sbjct: 85 NGGFCSGVCHNLPGTFECICGPDSALA 111
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 29.2 bits (65), Expect = 1.3
Identities = 34/192 (17%), Positives = 49/192 (25%), Gaps = 46/192 (23%)
Query: 25 CLNGGKCVQKD----TC-ECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLR 79
C G +C +C C GF G NG C D C
Sbjct: 11 CFPGAQCSSFPDGSWSCGFCPVGFLG-------------NGTHCEDLDECALVPDICFST 57
Query: 80 CEFSKCIIPCLNGG-RCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCK---- 134
+ +C+ G C CPP + G+ C CK
Sbjct: 58 SKVPRCV--NTQPGFHCL-----PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTH 110
Query: 135 ----------------GVNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTCACYE 178
+ KC C G+ GD + + P VC+ T C +
Sbjct: 111 NCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIK 170
Query: 179 GWFGRTCSQRSD 190
+ +
Sbjct: 171 DNCPHLPNSGQE 182
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 28.7 bits (63), Expect = 2.0
Identities = 23/153 (15%), Positives = 32/153 (20%), Gaps = 47/153 (30%)
Query: 25 CLNGGKCVQKDTCECQKGFYGLRCEFCI--------------CTEKCLNGGKCVQKDTCE 70
+ C CQ G C+ C +C + C
Sbjct: 276 DAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCY 335
Query: 71 CQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNG 130
+ GG C C G CE
Sbjct: 336 YDPEVDRREASQN-QDNVYQGGGVC-----LDCQHHTTGINCE----------------- 372
Query: 131 GRCKGVNKCRCPPGFLGDYCEIWQRPYICPKPC 163
RC PGF + P++C +P
Sbjct: 373 ---------RCLPGFFRAPDQPLDSPHVC-RPA 395
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 28.5 bits (63), Expect = 2.1
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 13/56 (23%)
Query: 143 PGFLGDYCEIWQRPYICPKPCKQGVCS---------AARTCACYEGWF----GRTC 185
P + + + Q P G CS CAC G G+TC
Sbjct: 252 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 28.2 bits (64), Expect = 2.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 86 IIPCL--NGGRC---KGVN 99
IIPCL +GG KGVN
Sbjct: 7 IIPCLDIDGGAKVVVKGVN 25
Score = 28.2 bits (64), Expect = 2.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 5/19 (26%)
Query: 124 IIPCL--NGGRC---KGVN 137
IIPCL +GG KGVN
Sbjct: 7 IIPCLDIDGGAKVVVKGVN 25
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM;
2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 53 CTEKCLNGGKCVQKD----TCEC-QKGFYGLRCEFSK 84
C C + G CV+ C+C + G+ G C +
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPE 42
Score = 28.1 bits (62), Expect = 3.3
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 21 CTEKCLNGGKCVQKD----TCEC-QKGFYGLRCEF 50
C C + G CV+ C+C + G+ G C
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
Score = 26.9 bits (59), Expect = 7.2
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 123 CIIPCLNGGRCKGVN----KCRC-PPGFLGDYCEI-----WQRPYICPKP 162
C PC + G C +C C G+ G C I W R + P P
Sbjct: 6 CYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSP 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 2.4
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 18/54 (33%)
Query: 197 TFYHDDEEGPPVRNLYSSLLGSDSGEDKS-----------------TFYHDDEE 233
T + E+G +R YS+++ ++ D TF +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 28.3 bits (62), Expect = 2.5
Identities = 30/159 (18%), Positives = 46/159 (28%), Gaps = 39/159 (24%)
Query: 24 KCLNGGKCVQKDTCECQKGFYGLRCEF--CICTEKCLNGG-------------KCVQKDT 68
C NG + +C + F + +C+
Sbjct: 124 FCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQ 183
Query: 69 CECQKGFYGLRCEFSKCIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCI---- 124
CEC+ + S+ C G + CRC G++G CE + S+ +
Sbjct: 184 CECRC------RDQSRDRSLCHGKGFLEC-GICRCDTGYIGKNCECQTQGRSSQELEGSC 236
Query: 125 ------IPCLNGGRCKGVNKCRCPPG------FLGDYCE 151
I C G C +C C G YCE
Sbjct: 237 RKDNNSIICSGLGDCVC-GQCLCHTSDVPGKLIYGQYCE 274
Score = 27.9 bits (61), Expect = 3.1
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 1/106 (0%)
Query: 89 CLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGD 148
C NG + + C + + ++CI R G
Sbjct: 125 CSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQC 184
Query: 149 YCEIWQRPYICPKPCKQGVCSAARTCACYEGWFGRTCSQRSDSGED 194
C + +G C C G+ G+ C ++
Sbjct: 185 ECRCRDQSRDRSLCHGKGFLECG-ICRCDTGYIGKNCECQTQGRSS 229
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 27.8 bits (63), Expect = 2.8
Identities = 9/17 (52%), Positives = 9/17 (52%), Gaps = 3/17 (17%)
Query: 86 IIPCL--NGGRC-KGVN 99
II CL GR KG N
Sbjct: 6 IIACLDVKDGRVVKGSN 22
Score = 27.8 bits (63), Expect = 2.8
Identities = 9/17 (52%), Positives = 9/17 (52%), Gaps = 3/17 (17%)
Query: 124 IIPCL--NGGRC-KGVN 137
II CL GR KG N
Sbjct: 6 IIACLDVKDGRVVKGSN 22
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 27.8 bits (63), Expect = 2.9
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 82 FSKCIIPCL--NGGRC-KGVN 99
+K I+PCL + GR KGVN
Sbjct: 3 LAKRIVPCLDVHAGRVVKGVN 23
Score = 27.8 bits (63), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Query: 124 IIPCL--NGGRC-KGVN 137
I+PCL + GR KGVN
Sbjct: 7 IVPCLDVHAGRVVKGVN 23
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 27.7 bits (60), Expect = 2.9
Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 19/138 (13%)
Query: 27 NGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK-- 84
+ C + + C + V C C +G+
Sbjct: 37 SENTCEEXNECXXETLGXACGEFGQCIENPDPAQ---VNMYXCGCIEGYTLXEDTCVLDV 93
Query: 85 -CIIPCLNGGRCK-------GVNKCRCPPGFLGDYCEIWQRPYISKC---IIPCLNGGRC 133
C G C C C G + + + + + + C
Sbjct: 94 CQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVC 153
Query: 134 ---KGVNKCRCPPGFLGD 148
+GV C+C GF D
Sbjct: 154 XNVEGVYXCQCMEGFTFD 171
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.0 bits (61), Expect = 3.2
Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 12/52 (23%)
Query: 100 KCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNKCRCPPGFLGDYCE 151
C C C +P C G + C C PG LG CE
Sbjct: 454 LCDCN-------CS-DTQPQAPHC---SDGQGHLQC-GVCSCAPGRLGRLCE 493
Score = 27.6 bits (60), Expect = 4.3
Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 16/111 (14%)
Query: 15 LFVSGICTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQ------KDT 68
+ C GK + C + + + CL ++ +
Sbjct: 387 ISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLPEPHLLRLRALGFSEE 446
Query: 69 CECQKGFYGLRCEFSKCIIPCLNGGRCKGVN------KCRCPPGFLGDYCE 113
+ C+ + C C C C PG LG CE
Sbjct: 447 LIVELHTL---CDCN-CSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
Score = 26.4 bits (57), Expect = 9.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 174 CACYEGWFGRTCS 186
C+C G GR C
Sbjct: 481 CSCAPGRLGRLCE 493
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS
HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 27.8 bits (61), Expect = 3.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 53 CTEKCLNGGKCVQKD----TCEC-QKGFYGLRCEFS 83
C+ C N G+C+ C+C + GFYG C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTP 40
Score = 27.4 bits (60), Expect = 4.7
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 21 CTEKCLNGGKCVQKD----TCEC-QKGFYGLRCEF 50
C+ C N G+C+ C+C + GFYG C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
Score = 27.0 bits (59), Expect = 6.5
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 123 CIIPCLNGGRCKGVN----KCRCPP-GFLGDYCEI---WQRPYICPKP 162
C PC N G C KC C GF G+ C R + KP
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTTPEFLTRIKLLLKP 52
Score = 26.6 bits (58), Expect = 9.5
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 85 CIIPCLNGGRCKGVN----KCRCPP-GFLGDYCEI 114
C PC N G C KC C GF G+ C
Sbjct: 5 CSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like
domain, repeat; HET: ABA; NMR {Mus musculus} SCOP:
g.3.11.1
Length = 45
Score = 25.1 bits (54), Expect = 4.0
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 57 CLNGGKC-----VQKDTCECQKGFYGLRCEFS 83
CLNGG + TC C G+ G RC+
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR 42
Score = 24.3 bits (52), Expect = 8.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 25 CLNGGKC-----VQKDTCECQKGFYGLRCEF 50
CLNGG + TC C G+ G RC+
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQT 41
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 27.5 bits (60), Expect = 4.9
Identities = 27/157 (17%), Positives = 41/157 (26%), Gaps = 21/157 (13%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
+ C K C+ + G C E C + + + + F C
Sbjct: 736 NSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPAC 795
Query: 81 EFSKCIIPCLNGGRCKGVNKCRC-PPGFLGDYCEIWQRPYISKCIIPCLNG-----GRCK 134
+F CLN + ++ C L E + S C +C
Sbjct: 796 KF--LAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCS 853
Query: 135 G-VNKCRCPPGFLGDYCEIWQRPYICPKPCKQGVCSA 170
+KC C P C K Q C
Sbjct: 854 ASTSKCVC------------LLPPQCFKGGNQLYCVK 878
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 26.3 bits (58), Expect = 7.0
Identities = 28/146 (19%), Positives = 32/146 (21%), Gaps = 38/146 (26%)
Query: 21 CTEKCLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRC 80
C C CV C C GF E C D EC
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC--------DDINECATLSKV--- 53
Query: 81 EFSKCIIPCLNGGRCKGVN-----KCRCPPGFLGDYCEIWQRPYISKCII---------- 125
C C N C C PG+ +
Sbjct: 54 -------SCGKFSDC--WNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQH 104
Query: 126 PCLNGGRCK---GVNKCRCPPGFLGD 148
C + C G CRC PG+
Sbjct: 105 QCDSSTVCFNTVGSYSCRCRPGWKPR 130
Score = 25.9 bits (57), Expect = 9.9
Identities = 11/37 (29%), Positives = 11/37 (29%)
Query: 123 CIIPCLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYIC 159
C C C CRC PGF I C
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC 41
>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus
actinomycetemcomitans, oligomerization, stability and
toxic activity; 2.40A {Aggregatibacter
actinomycetemcomitans} SCOP: b.42.2.1
Length = 186
Score = 26.4 bits (57), Expect = 7.7
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 184 TCSQRSDSGEDKSTFYHDDEEGPPVRNLYSSLLG 217
T + ++S D +T+ + PP +L S L
Sbjct: 15 TLTSHAESNPDPTTYPDVELSPPPRISLRSLLTA 48
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 26.7 bits (58), Expect = 8.3
Identities = 16/156 (10%), Positives = 33/156 (21%), Gaps = 6/156 (3%)
Query: 25 CLNGGKCVQKDTCECQKGFYGLRCEFCICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSK 84
C+N C + +C G + C C + K+ + C
Sbjct: 249 CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 308
Query: 85 CIIP------CLNGGRCKGVNKCRCPPGFLGDYCEIWQRPYISKCIIPCLNGGRCKGVNK 138
+ C +G + +C + G +
Sbjct: 309 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHT 368
Query: 139 CRCPPGFLGDYCEIWQRPYICPKPCKQGVCSAARTC 174
C Y R + + ++
Sbjct: 369 KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 404
>3fju_B Carboxypeptidase A inhibitor; ascariasis, HOST resistance,
metallocarboxypeptidase inhibit immunolocalization,
hydrolase; 1.60A {Ascaris suum}
Length = 65
Score = 24.7 bits (53), Expect = 9.1
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 51 CICTEKCLNGGKCVQKDTCECQKGFYGLRCEFSKCIIPCLNGGRCK 96
C+ C NG KCVQK+ C RCE IPC + C+
Sbjct: 4 CLSDTDCTNGEKCVQKNKI-CSTIVEIQRCEKEHFTIPCKSNNDCQ 48
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 24.4 bits (53), Expect = 9.4
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 57 CLNGGKC-----VQKDTCECQKGFYGLRCEFS 83
C +G C K C C G+ G RCE +
Sbjct: 16 CFHG-TCRFLVQEDKPACVCHSGYVGARCEHA 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.144 0.512
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,836,051
Number of extensions: 237353
Number of successful extensions: 2170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1189
Number of HSP's successfully gapped: 508
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)