BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9569
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Y69|E Chain E, Bovine Heart Cytochrome C Oxidase Re-Refined With
           Molecular Oxygen
 pdb|2Y69|R Chain R, Bovine Heart Cytochrome C Oxidase Re-Refined With
           Molecular Oxygen
          Length = 152

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           +R +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 40  LRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 100 RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 151


>pdb|1OCC|E Chain E, Structure Of Bovine Heart Cytochrome C Oxidase At The
           Fully Oxidized State
 pdb|1OCC|R Chain R, Structure Of Bovine Heart Cytochrome C Oxidase At The
           Fully Oxidized State
 pdb|2OCC|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State
 pdb|2OCC|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State
 pdb|1OCO|E Chain E, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
           State
 pdb|1OCO|R Chain R, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
           State
 pdb|1OCR|E Chain E, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
           State
 pdb|1OCR|R Chain R, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
           State
 pdb|1OCZ|E Chain E, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
 pdb|1OCZ|R Chain R, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
 pdb|1V54|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State
 pdb|1V54|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State
 pdb|1V55|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
           State
 pdb|1V55|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
           State
 pdb|2DYR|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State
 pdb|2DYR|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State
 pdb|2DYS|E Chain E, Bovine Heart Cytochrome C Oxidase Modified By Dccd
 pdb|2DYS|R Chain R, Bovine Heart Cytochrome C Oxidase Modified By Dccd
 pdb|2EIJ|E Chain E, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
           State
 pdb|2EIJ|R Chain R, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
           State
 pdb|2EIK|E Chain E, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Reduced State
 pdb|2EIK|R Chain R, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Reduced State
 pdb|2EIL|E Chain E, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Oxidized State
 pdb|2EIL|R Chain R, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Oxidized State
 pdb|2EIM|E Chain E, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Reduced State
 pdb|2EIM|R Chain R, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Reduced State
 pdb|2EIN|E Chain E, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Oxidized State
 pdb|2EIN|R Chain R, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
           Oxidase In The Fully Oxidized State
 pdb|2ZXW|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State (1-S X-Ray Exposure Dataset)
 pdb|2ZXW|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State (1-S X-Ray Exposure Dataset)
 pdb|3ABL|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State (15-S X-Ray Exposure Dataset)
 pdb|3ABL|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State (15-S X-Ray Exposure Dataset)
 pdb|3ABM|E Chain E, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State (200-S X-Ray Exposure Dataset)
 pdb|3ABM|R Chain R, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
           State (200-S X-Ray Exposure Dataset)
 pdb|3ABK|E Chain E, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
           Reduced State (50k)
 pdb|3ABK|R Chain R, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
           Reduced State (50k)
 pdb|3AG1|E Chain E, Bovine Heart Cytochrome C Oxidase In The Carbon
           Monoxide-Bou Reduced State At 280 K
 pdb|3AG1|R Chain R, Bovine Heart Cytochrome C Oxidase In The Carbon
           Monoxide-Bou Reduced State At 280 K
 pdb|3AG2|E Chain E, Bovine Heart Cytochrome C Oxidase In The Carbon
           Monoxide-Bou Reduced State At 100 K
 pdb|3AG2|R Chain R, Bovine Heart Cytochrome C Oxidase In The Carbon
           Monoxide-Bou Reduced State At 100 K
 pdb|3AG3|E Chain E, Bovine Heart Cytochrome C Oxidase In The Nitric
           Oxide-Bound Reduced State At 100 K
 pdb|3AG3|R Chain R, Bovine Heart Cytochrome C Oxidase In The Nitric
           Oxide-Bound Reduced State At 100 K
 pdb|3AG4|E Chain E, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
           F Reduced State At 100 K
 pdb|3AG4|R Chain R, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
           F Reduced State At 100 K
 pdb|3ASN|E Chain E, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
           State Measured At 1.7470 Angstrom Wavelength
 pdb|3ASN|R Chain R, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
           State Measured At 1.7470 Angstrom Wavelength
 pdb|3ASO|E Chain E, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
           State Measured At 0.9 Angstrom Wavelength
 pdb|3ASO|R Chain R, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
           State Measured At 0.9 Angstrom Wavelength
 pdb|2YBB|P Chain P, Fitted Model For Bovine  Mitochondrial Supercomplex
           I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
          Length = 109

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 37  SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVND 96
           SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A RR+ND
Sbjct: 1   SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLND 60

Query: 97  YALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           +A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 61  FASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 108


>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
          Length = 382

 Score = 27.7 bits (60), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 49  KRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
           +  + +F Q D D + +   + N+ HDDC 
Sbjct: 137 RNIIGYFEQKDSDNYRVFERVANILHDDCA 166


>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
          Length = 227

 Score = 26.6 bits (57), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 55  FNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKA----IRRVNDYALAIRFLETTEFK 110
           FN P   G D   G   +  +D    PE +I  LKA     + V +Y      LET    
Sbjct: 142 FNPPKTVGIDDLTGEPLIQREDD--KPETVIKRLKAYEDQTKPVLEYYQKKGVLETF--- 196

Query: 111 TGGSHDKIWPYI 122
           +G   +KIWPY+
Sbjct: 197 SGTETNKIWPYV 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,229,394
Number of Sequences: 62578
Number of extensions: 160625
Number of successful extensions: 420
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 8
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)