BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9569
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94514|COX5A_DROME Cytochrome c oxidase subunit 5A, mitochondrial OS=Drosophila
melanogaster GN=CoVa PE=1 SV=2
Length = 149
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 100/152 (65%), Gaps = 15/152 (9%)
Query: 4 ALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGW 63
AL S L +SS+V A +R H EES EEF KRY +F++ IDGW
Sbjct: 12 ALRSSLVGTSSRV--------------AAVRCL-HGTEESAEEFDKRYEKYFSREGIDGW 56
Query: 64 DIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIV 123
+IR+G+ +L D VP P+II A L+A RRVND ALAIR+LE + K G ++PY++
Sbjct: 57 EIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGCKDKCGDQKATLYPYLL 116
Query: 124 QEITPTLKELGIETPAQLGYDKPELALESVYD 155
++ITPTL+ELGI T +LGYDKPELAL+SVYD
Sbjct: 117 EKITPTLQELGIPTIEELGYDKPELALKSVYD 148
>sp|B0VYY3|COX5A_OTOCR Cytochrome c oxidase subunit 5A, mitochondrial OS=Otolemur
crassicaudatus GN=COX5A PE=2 SV=1
Length = 150
Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 93/142 (65%), Gaps = 2/142 (1%)
Query: 4 ALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGW 63
A+A+ A S +L T V IR +SH E+DEEF R+V +FN+PDID W
Sbjct: 10 AVAAASRAGSRGLLHPTPVPGPT-AAIQSIRCYSHGSHETDEEFDARWVTYFNKPDIDAW 68
Query: 64 DIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIV 123
++R+G+ L D VP+P+II AAL+A RR+ND+A A+R LE + K G H +I+PY++
Sbjct: 69 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 127
Query: 124 QEITPTLKELGIETPAQLGYDK 145
QE+ PTL ELGI TP +LG DK
Sbjct: 128 QELRPTLNELGISTPEELGLDK 149
>sp|B0VYY2|COX5A_NYCCO Cytochrome c oxidase subunit 5A, mitochondrial OS=Nycticebus
coucang GN=COX5A PE=2 SV=1
Length = 150
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
IR +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A A+R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|P11240|COX5A_RAT Cytochrome c oxidase subunit 5A, mitochondrial OS=Rattus norvegicus
GN=Cox5a PE=1 SV=1
Length = 146
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
IR +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 34 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 93
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A A+R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 94 RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 145
>sp|P00426|COX5A_BOVIN Cytochrome c oxidase subunit 5A, mitochondrial OS=Bos taurus
GN=COX5A PE=1 SV=2
Length = 152
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 40 LRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A A+R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 100 RLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGISTPEELGLDK 151
>sp|B0VYY4|COX5A_EULFU Cytochrome c oxidase subunit 5A, mitochondrial OS=Eulemur fulvus
fulvus GN=COX5A PE=2 SV=1
Length = 152
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
IR +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 40 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A A+R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 100 RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 151
>sp|P12787|COX5A_MOUSE Cytochrome c oxidase subunit 5A, mitochondrial OS=Mus musculus
GN=Cox5a PE=1 SV=2
Length = 146
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
IR +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 34 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 93
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A A+R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 94 RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 145
>sp|B0VYX4|COX5A_PONPY Cytochrome c oxidase subunit 5A, mitochondrial OS=Pongo pygmaeus
GN=COX5A PE=2 SV=1
Length = 150
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX1|COX5A_PANTR Cytochrome c oxidase subunit 5A, mitochondrial OS=Pan troglodytes
GN=COX5A PE=2 SV=1
Length = 150
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|P20674|COX5A_HUMAN Cytochrome c oxidase subunit 5A, mitochondrial OS=Homo sapiens
GN=COX5A PE=1 SV=2
Length = 150
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX8|COX5A_PAPAN Cytochrome c oxidase subunit 5A, mitochondrial OS=Papio anubis
GN=COX5A PE=2 SV=1
Length = 150
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ LA D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSYETDEEFDARWVTYFNKPDIDAWELRKGINTLATYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX5|COX5A_NOMGA Cytochrome c oxidase subunit 5A, mitochondrial OS=Nomascus
gabriellae GN=COX5A PE=2 SV=1
Length = 150
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX6|COX5A_HYLSY Cytochrome c oxidase subunit 5A, mitochondrial OS=Hylobates
syndactylus GN=COX5A PE=2 SV=1
Length = 150
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX9|COX5A_CALPY Cytochrome c oxidase subunit 5A, mitochondrial OS=Callithrix
pygmaea GN=COX5A PE=2 SV=1
Length = 150
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSSETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYY0|COX5A_SAGLB Cytochrome c oxidase subunit 5A, mitochondrial OS=Saguinus labiatus
GN=COX5A PE=2 SV=1
Length = 150
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSSETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|Q53CF8|COX5A_MACMU Cytochrome c oxidase subunit 5A, mitochondrial OS=Macaca mulatta
GN=COX5A PE=2 SV=1
Length = 150
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX7|COX5A_COLGU Cytochrome c oxidase subunit 5A, mitochondrial OS=Colobus guereza
GN=COX5A PE=2 SV=1
Length = 150
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX3|COX5A_GORGO Cytochrome c oxidase subunit 5A, mitochondrial OS=Gorilla gorilla
gorilla GN=COX5A PE=2 SV=1
Length = 150
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+N++A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNEFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYX2|COX5A_PANPA Cytochrome c oxidase subunit 5A, mitochondrial OS=Pan paniscus
GN=COX5A PE=2 SV=1
Length = 150
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R SH +E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCXSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|B0VYY5|COX5A_MACPM Cytochrome c oxidase subunit 5A, mitochondrial OS=Macropus parma
GN=COX5A PE=2 SV=1
Length = 154
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +F++PD+D W++R+G+ L D VP+P+II AAL+A R
Sbjct: 42 VRCYSHGSHETDEEFDARWVTYFSKPDLDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 101
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKP 146
R++D+A A+R LE + K G H +I+PYI+QE+ PTL ELGI TP +LG DKP
Sbjct: 102 RLDDFASAVRILEVVKDK-AGPHKEIYPYIIQELRPTLDELGISTPEELGLDKP 154
>sp|B0VYY1|COX5A_CALDO Cytochrome c oxidase subunit 5A, mitochondrial OS=Callicebus
donacophilus GN=COX5A PE=2 SV=1
Length = 150
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSSETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|Q53CG1|COX5A_SAISC Cytochrome c oxidase subunit 5A, mitochondrial OS=Saimiri sciureus
GN=COX5A PE=2 SV=1
Length = 150
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
+R +SH E+DEEF R+V FN+PDID W++R+G+ L D VP+P+II AAL+A R
Sbjct: 38 VRCYSHGSSETDEEFDARWVTXFNKPDIDAWELRKGINTLVTYDLVPEPKIIDAALRACR 97
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
R+ND+A +R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98 RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149
>sp|P55954|COX5A_CAEEL Cytochrome c oxidase subunit 5A, mitochondrial OS=Caenorhabditis
elegans GN=cco-2 PE=1 SV=2
Length = 174
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 11/146 (7%)
Query: 7 SRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEES--DEEFVKRYVAFFNQPDIDGWD 64
+RLA + Q +R A T P+ + E ++F ++ + N+P+IDGW+
Sbjct: 9 TRLAIAGRQAVRTIA-------TTTPVSGHGDDIMEKWPADKFDNHFINYLNRPEIDGWE 61
Query: 65 IRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGG--SHDKIWPYI 122
+R+ L L D +PDP+++ AAL+A RRVND+ALA+RFLE + K G + D ++ YI
Sbjct: 62 VRKALSELHDYDVIPDPKVVEAALRACRRVNDFALAVRFLEAIKIKCGAQKNRDTVYAYI 121
Query: 123 VQEITPTLKELGIETPAQLGYDKPEL 148
V+++ P LKELGI+TP QLGY +PE
Sbjct: 122 VKQVEPVLKELGIDTPEQLGYGEPEF 147
>sp|P00427|COX6_YEAST Cytochrome c oxidase subunit 6, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX6 PE=1
SV=1
Length = 148
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 29 TFAPIRSFSHAV-EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAA 87
TF R +S A EE+ EEF RY F++ D ++++R L N D VP P +I A
Sbjct: 33 TFIQSRKYSDAHDEETFEEFTARYEKEFDEA-YDLFEVQRVLNNCFSYDLVPAPAVIEKA 91
Query: 88 LKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQL 141
L+A RRVND AIR E ++K D+ Y+ E+ +ELG+ +L
Sbjct: 92 LRAARRVNDLPTAIRVFEALKYKVEN-EDQYKAYL-DELKDVRQELGVPLKEEL 143
>sp|Q9UTF6|COX6_SCHPO Cytochrome c oxidase subunit 6, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox6 PE=3 SV=1
Length = 140
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 35 SFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRV 94
S +H V S EE +Y FF+ D ++++RGL N D VP ++I AL+A RRV
Sbjct: 37 SSNHGV--SLEEINTKYNDFFSNVQ-DQFELQRGLNNCFAYDIVPSSDVIEQALRAARRV 93
Query: 95 NDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGI 135
ND+ A+R E + K + ++ Y V+E+ P ELGI
Sbjct: 94 NDFPTAVRIFEGIKVKL-PTKEQYQAY-VKELKPVCNELGI 132
>sp|O61694|COX5A_MANSE Cytochrome c oxidase subunit 5A, mitochondrial (Fragment)
OS=Manduca sexta GN=COVA PE=3 SV=1
Length = 63
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 14 SQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRR 67
+ VL+++ V + P+R ESDEEF RY AFFN+ DIDGW+IR+
Sbjct: 10 ANVLKRSLVPAARVTAVVPLRRSHGGPVESDEEFDSRYEAFFNRKDIDGWEIRK 63
>sp|Q01359|COX6_NEUCR Cytochrome c oxidase subunit 6, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cox-6 PE=3 SV=2
Length = 148
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 61 DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120
D ++++R L N D VP P ++ AALKA RRVND+ A+R E + K + +
Sbjct: 64 DVFELQRNLNNAFAYDLVPSPSVLAAALKAARRVNDFPTAVRVFEGIKAKV--ENKGQYE 121
Query: 121 YIVQEITPTLKELGI 135
+ E+ P +ELGI
Sbjct: 122 QYLAELKPLREELGI 136
>sp|P80973|COXC_THUOB Cytochrome c oxidase subunit 5A-2, mitochondrial (Fragment)
OS=Thunnus obesus PE=1 SV=1
Length = 24
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 37 SHAVEESDEEFVKRYVAFFNQPDI 60
SH +E+DEEF R+V +FN+ DI
Sbjct: 1 SHGKQETDEEFDARWVTYFNKSDI 24
>sp|P16235|LSHR_RAT Lutropin-choriogonadotropic hormone receptor OS=Rattus norvegicus
GN=Lhcgr PE=1 SV=1
Length = 700
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 24 KVKPLTFAPIRSFSHAVE----ESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVP 79
K + +F+ +FS E ++D E + Y A F + ++ GWD G + C P
Sbjct: 292 KEQNFSFSIFENFSKQCESTVRKADNETL--YSAIFEENELSGWDYDYGFCSPKTLQCAP 349
Query: 80 DPE 82
+P+
Sbjct: 350 EPD 352
>sp|C3PE74|RECF_CORA7 DNA replication and repair protein RecF OS=Corynebacterium
aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
GN=recF PE=3 SV=1
Length = 392
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 8 RLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDID 61
RLAA + QVL AV + P PI F+ V ++DE + + D D
Sbjct: 338 RLAAGAEQVLITAAVDEDLPGNLQPIERFTVTVRDTDEGRISEIAPYTAGGDED 391
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 56 NQPDIDGWDIRRGLMNLAHDDCVP 79
N D DGW R+GL N + DC+P
Sbjct: 103 NALDYDGWAERKGLENWTYLDCLP 126
>sp|A0RQ36|NAPA_CAMFF Periplasmic nitrate reductase OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=napA PE=3 SV=1
Length = 925
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 41 EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALA 100
E DEEFVK F P G+ +R N+ H +P A K+ + +
Sbjct: 280 EAIDEEFVKANCVFTTGPVDIGYGMR---ANIKHPKYLPSELDTAAKEKSTVLSENEGVT 336
Query: 101 IRFL-----ETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALE 151
+ +L +T E K+ G+ DK W ++ L ++ A+L P LE
Sbjct: 337 LAYLGMKAGDTLENKSTGAPDKHWIIQYEDFKKALAPYTLDFVAKLAKGDPNEDLE 392
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 19 QTAVSKVKPLTFAPI-RSFSHAVEESDEEFVKRY 51
+T +S+ K + +AP+ H VEE ++EF RY
Sbjct: 482 ETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRY 515
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,963,112
Number of Sequences: 539616
Number of extensions: 2111215
Number of successful extensions: 4928
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4873
Number of HSP's gapped (non-prelim): 40
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)