Query psy9569
Match_columns 156
No_of_seqs 113 out of 157
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:57:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y69_E Cytochrome C oxidase su 100.0 5.8E-71 2E-75 436.4 12.8 122 24-146 31-152 (152)
2 1v54_E Cytochrome C oxidase po 100.0 5.2E-69 1.8E-73 406.9 13.0 109 37-146 1-109 (109)
3 1vdl_A Ubiquitin carboxyl-term 72.6 4.2 0.00014 29.2 3.9 45 66-112 25-69 (80)
4 4g26_A Pentatricopeptide repea 69.7 14 0.00049 31.7 7.4 61 64-124 158-218 (501)
5 2zc2_A DNAD-like replication p 69.3 8.8 0.0003 25.2 4.8 42 47-91 6-47 (78)
6 2lva_A Ubiquitin carboxyl-term 72.0 1 3.4E-05 34.9 0.0 44 66-111 19-62 (129)
7 3ox4_A Alcohol dehydrogenase 2 64.8 7.2 0.00025 32.7 4.5 31 118-148 319-350 (383)
8 1c9b_A General transcription f 61.6 10 0.00035 28.6 4.4 96 41-144 99-198 (207)
9 3r2d_A Protein NUSB, N utiliza 56.7 19 0.00065 26.7 5.1 50 61-111 82-131 (149)
10 2e2e_A Formate-dependent nitri 56.4 18 0.00062 24.4 4.6 62 81-144 115-176 (177)
11 2xcb_A PCRH, regulatory protei 54.9 34 0.0012 22.6 5.7 52 81-134 86-137 (142)
12 4g26_A Pentatricopeptide repea 51.1 50 0.0017 28.3 7.5 60 64-124 123-183 (501)
13 2czy_A Paired amphipathic heli 48.4 16 0.00056 24.8 3.3 34 97-131 4-37 (77)
14 1q5z_A SIPA, SIPA; cell invasi 47.8 41 0.0014 26.6 5.9 82 32-114 38-120 (177)
15 1ais_B TFB TFIIB, protein (tra 45.7 39 0.0013 25.1 5.3 86 42-137 106-197 (200)
16 1tzv_A NUSB protein, N utiliza 45.3 34 0.0012 24.8 4.8 50 61-111 81-130 (142)
17 3fnr_A Arginyl-tRNA synthetase 44.6 34 0.0012 30.1 5.5 61 81-143 384-456 (464)
18 1a17_A Serine/threonine protei 41.5 68 0.0023 20.5 7.3 67 81-148 81-166 (166)
19 1ttz_A Conserved hypothetical 41.1 8.9 0.0003 25.8 1.0 26 123-148 14-40 (87)
20 1vlj_A NADH-dependent butanol 40.6 18 0.00062 30.4 3.0 29 120-148 336-365 (407)
21 1d1d_A Protein (capsid protein 40.6 1E+02 0.0035 25.7 7.5 27 39-65 181-211 (262)
22 3d3b_A Protein NUSB, N utiliza 40.2 33 0.0011 24.8 4.0 50 61-111 83-132 (141)
23 1ef4_A Subunit N, DNA-directed 39.8 18 0.00062 24.1 2.3 27 110-136 8-40 (55)
24 1rrm_A Lactaldehyde reductase; 39.1 21 0.0007 29.6 3.1 29 120-148 321-350 (386)
25 2cr7_A Paired amphipathic heli 37.7 18 0.00061 24.8 2.1 33 98-131 11-43 (80)
26 2g3q_A Protein YBL047C; endocy 36.9 38 0.0013 20.0 3.3 33 68-104 7-39 (43)
27 2ekk_A UBA domain from E3 ubiq 36.7 26 0.00089 21.2 2.6 22 81-105 23-44 (47)
28 3vtf_A UDP-glucose 6-dehydroge 35.3 93 0.0032 27.3 6.8 57 54-111 248-328 (444)
29 4ayb_N DNA-directed RNA polyme 34.6 22 0.00077 24.4 2.2 27 110-136 9-41 (66)
30 1oj7_A Hypothetical oxidoreduc 34.6 28 0.00096 29.2 3.2 29 120-148 345-374 (408)
31 2vkj_A TM1634; membrane protei 33.4 31 0.0011 25.7 2.9 58 73-130 43-103 (106)
32 2vgx_A Chaperone SYCD; alterna 33.4 1.1E+02 0.0038 20.7 6.2 53 81-135 89-141 (148)
33 2jv7_A CBP, calcium-binding pr 33.4 35 0.0012 24.3 3.1 45 93-141 8-59 (78)
34 3bfj_A 1,3-propanediol oxidore 33.0 29 0.001 28.7 3.1 29 120-148 325-354 (387)
35 1e91_A Paired amphipathic heli 32.8 51 0.0017 22.7 3.8 41 96-138 6-46 (85)
36 2kat_A Uncharacterized protein 32.5 27 0.00092 22.0 2.2 49 83-134 55-103 (115)
37 1wji_A Tudor domain containing 32.1 58 0.002 21.3 3.9 34 68-105 12-45 (63)
38 1otk_A Protein PAAC, phenylace 32.0 53 0.0018 27.0 4.5 28 116-143 190-217 (249)
39 1wgl_A TOLL-interacting protei 32.0 21 0.0007 23.5 1.6 25 81-107 25-49 (59)
40 1twf_J DNA-directed RNA polyme 31.9 30 0.001 24.0 2.5 27 110-136 9-42 (70)
41 1wiv_A UBP14, ubiquitin-specif 31.2 33 0.0011 23.1 2.6 33 69-105 33-65 (73)
42 1ify_A HHR23A, UV excision rep 30.8 47 0.0016 20.5 3.1 35 67-105 10-44 (49)
43 1g1e_B SIN3A; four-helix bundl 30.7 60 0.0021 22.6 4.0 35 96-131 9-43 (89)
44 1eyv_A NUSB protein, N-utilizi 30.5 47 0.0016 24.7 3.6 52 61-113 89-140 (156)
45 3hl0_A Maleylacetate reductase 29.4 29 0.001 28.9 2.5 27 122-148 289-316 (353)
46 3ma5_A Tetratricopeptide repea 29.2 38 0.0013 21.3 2.5 53 82-137 42-94 (100)
47 2rpa_A Katanin P60 ATPase-cont 29.0 34 0.0012 23.7 2.4 44 84-127 12-66 (78)
48 2ptf_A Uncharacterized protein 28.7 58 0.002 26.0 4.1 46 82-127 171-221 (233)
49 2dhy_A CUE domain-containing p 28.6 49 0.0017 22.3 3.1 28 80-109 33-60 (67)
50 4djd_D C/Fe-SP, corrinoid/iron 28.6 14 0.00049 31.4 0.5 65 79-144 142-214 (323)
51 1vg5_A RSGI RUH-014, rhomboid 28.5 88 0.003 21.2 4.4 33 69-105 33-65 (73)
52 1z96_A DNA-damage, UBA-domain 28.1 54 0.0019 18.5 2.9 32 69-104 8-39 (40)
53 3qxl_A RAS-specific guanine nu 27.6 21 0.00073 28.9 1.3 22 88-109 111-132 (271)
54 1f7u_A Arginyl-tRNA synthetase 26.2 1E+02 0.0034 28.0 5.6 61 81-141 535-607 (607)
55 2nr4_A Conserved hypothetical 26.0 47 0.0016 26.0 3.0 45 82-126 162-211 (213)
56 1baj_A GAG polyprotein; capsid 25.8 43 0.0015 23.8 2.5 59 39-98 12-81 (101)
57 3jzd_A Iron-containing alcohol 25.7 38 0.0013 28.3 2.6 27 122-148 294-321 (358)
58 2ije_S Guanine nucleotide-rele 25.6 35 0.0012 26.8 2.2 57 48-109 46-105 (240)
59 3iv7_A Alcohol dehydrogenase I 25.5 39 0.0013 28.4 2.6 26 123-148 292-318 (364)
60 1t23_A Chromosomal protein MC1 25.4 28 0.00096 25.5 1.5 9 85-93 26-34 (93)
61 2rkl_A Vacuolar protein sortin 25.0 29 0.00098 22.9 1.4 29 77-105 10-44 (53)
62 3smv_A S-(-)-azetidine-2-carbo 24.2 48 0.0016 23.0 2.5 18 78-95 152-169 (240)
63 3uhj_A Probable glycerol dehyd 23.9 52 0.0018 27.8 3.1 25 120-144 314-339 (387)
64 2rno_A Putative DNA-binding pr 23.8 34 0.0011 25.7 1.7 15 123-137 22-36 (110)
65 2f05_A Paired amphipathic heli 23.5 92 0.0031 22.5 4.0 36 96-132 6-41 (105)
66 2pk8_A Uncharacterized protein 23.3 16 0.00054 27.2 -0.2 46 100-145 15-81 (103)
67 1z3e_B DNA-directed RNA polyme 23.0 40 0.0014 22.8 1.8 23 118-140 49-71 (73)
68 3w3e_A Cotyledoneous yieldin-l 22.9 3.2E+02 0.011 22.5 7.6 49 93-142 186-234 (242)
69 3hbe_X Class IV chitinase CHIA 22.5 1.5E+02 0.0051 23.8 5.4 69 71-141 116-202 (204)
70 3viq_A SWI5-dependent recombin 22.3 24 0.00083 26.3 0.6 21 126-147 97-117 (122)
71 2iml_A Hypothetical protein; F 22.1 1E+02 0.0036 23.9 4.3 46 82-127 137-191 (199)
72 2xpi_A Anaphase-promoting comp 21.9 2.5E+02 0.0086 22.4 6.6 38 76-113 509-548 (597)
73 1pc2_A Mitochondria fission pr 21.7 1.5E+02 0.005 22.4 5.0 44 90-135 80-123 (152)
74 2ond_A Cleavage stimulation fa 21.5 2.6E+02 0.0088 20.9 8.7 76 64-140 221-299 (308)
75 3lxu_X Tripeptidyl-peptidase 2 21.1 70 0.0024 32.4 3.8 62 62-136 1272-1333(1354)
76 2inc_A Toluene, O-xylene monoo 20.9 1.1E+02 0.0038 27.3 4.7 27 116-142 286-317 (491)
77 3bqs_A Uncharacterized protein 20.7 26 0.0009 24.7 0.5 16 126-141 16-31 (93)
78 2yru_A Steroid receptor RNA ac 20.2 1.3E+02 0.0046 21.9 4.3 44 63-108 39-88 (118)
79 3pvt_A Phenylacetic acid degra 20.2 63 0.0021 27.3 2.8 23 117-139 222-244 (311)
80 2ho1_A Type 4 fimbrial biogene 20.1 2.2E+02 0.0076 19.6 6.8 30 81-110 175-204 (252)
No 1
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=5.8e-71 Score=436.36 Aligned_cols=122 Identities=48% Similarity=0.873 Sum_probs=102.7
Q ss_pred cCCccccccccccCCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHH
Q psy9569 24 KVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRF 103 (156)
Q Consensus 24 ~~~~~~~~~~r~~s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~ 103 (156)
+...++..++|+||+|++|||||||+||++|||+++||+||+||||||||+|||||+|+||+|||||||||||||+||||
T Consensus 31 ~~~~~~~~~~R~~s~h~~Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~ 110 (152)
T 2y69_E 31 PGQAAAVQSLRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRI 110 (152)
T ss_dssp ------------------CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccchHHHHHHhhcCCCCCcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCccccCCCCc
Q psy9569 104 LETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKP 146 (156)
Q Consensus 104 lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgydkp 146 (156)
||+||+|||++ ++|||||+|||||||+||||+|||||||||.
T Consensus 111 lE~vK~K~~~~-~~iY~y~lqElkPtl~ELGI~t~EeLg~dk~ 152 (152)
T 2y69_E 111 LEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPEELGLDKV 152 (152)
T ss_dssp HHHHHHHTTTC-TTHHHHHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred HHHHHHhcCCc-hhhHHHHHHHHhhHHHHhCCCCHHHhCCCcC
Confidence 99999999999 8899999999999999999999999999983
No 2
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=100.00 E-value=5.2e-69 Score=406.89 Aligned_cols=109 Identities=53% Similarity=0.945 Sum_probs=103.5
Q ss_pred CCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCcc
Q psy9569 37 SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHD 116 (156)
Q Consensus 37 s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~ 116 (156)
|+|++||+|+|++||++||++++||+||+||||||||+|||||+|+||+|||||||||||||+||||||+||+|||++ +
T Consensus 1 s~h~~et~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~ 79 (109)
T 1v54_E 1 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-K 79 (109)
T ss_dssp ----CCCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-T
T ss_pred CCCCcccHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-h
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred chhHHHHHhhhhhhHhhCCCCccccCCCCc
Q psy9569 117 KIWPYIVQEITPTLKELGIETPAQLGYDKP 146 (156)
Q Consensus 117 ~iY~~~lqElkPtl~ELGI~t~EeLgydkp 146 (156)
+|||||+|||||||+||||+|||||||||.
T Consensus 80 ~iY~~~lqElkPtl~ELGI~t~EeLg~dk~ 109 (109)
T 1v54_E 80 EIYPYVIQELRPTLNELGISTPEELGLDKV 109 (109)
T ss_dssp THHHHHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred hhHHHHHHHHhhHHHHhCCCCHHHhCCCcC
Confidence 899999999999999999999999999983
No 3
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=72.59 E-value=4.2 Score=29.21 Aligned_cols=45 Identities=29% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC
Q psy9569 66 RRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTG 112 (156)
Q Consensus 66 rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~ 112 (156)
|.-||.|--.-=|-+|.++..||+|.+ +|+..||-||-.=..|..
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~--Gdl~~AV~~LT~~~~~~P 69 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSN--GNLELAVAFLTAKNAKTP 69 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHT--SCHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhcc--CCHHHHHHHHhcccccCC
Confidence 445666666666789999999999999 999999999976555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=69.67 E-value=14 Score=31.70 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=39.4
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHH
Q psy9569 64 DIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQ 124 (156)
Q Consensus 64 e~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lq 124 (156)
+..+-+..+....+.|+.....+-+++|-+.+++..|.++|+-+++..-......|.-++.
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4444455555667777777777777777777777777777777776544332456655544
No 5
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=69.28 E-value=8.8 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHH
Q psy9569 47 FVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAI 91 (156)
Q Consensus 47 F~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAc 91 (156)
.-.-|++.|.++ +-..|++. +++.+..+-. +|++|..|++-|
T Consensus 6 l~~~~e~~~gr~-ls~~e~~~-i~~w~~~~~~-~~elI~~A~~~a 47 (78)
T 2zc2_A 6 LVEDFERELGRM-LSPFELED-LQKTVSDDKT-DPDLVRSALREA 47 (78)
T ss_dssp HHHHHHHHHTSC-CCHHHHHH-HHHHHTTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCHHHHHH-HHHHHHHhCC-CHHHHHHHHHHH
Confidence 445688899876 67777653 4444443322 589999999887
No 6
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=71.98 E-value=1 Score=34.92 Aligned_cols=44 Identities=27% Similarity=0.316 Sum_probs=36.8
Q ss_pred HHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q psy9569 66 RRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKT 111 (156)
Q Consensus 66 rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~ 111 (156)
|.-||.|--.==|++|.++..||+||. +|+..||-||-.=..|.
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsn--Gdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASN--GDITQAVSLLTDERVKE 62 (129)
Confidence 446777777777999999999999999 99999999997655555
No 7
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=64.82 E-value=7.2 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.6
Q ss_pred hhHHHHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 118 IWPYIVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 118 iY~~~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
.-...+++|+..+++|||| +..|||.++-++
T Consensus 319 ~a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i 350 (383)
T 3ox4_A 319 GAEATIQAVRDLAASIGIPANLTELGAKKEDV 350 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSSTTTTCCGGGH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 3456789999999999999 689999986544
No 8
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=61.58 E-value=10 Score=28.56 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHhhCCCCCcHH-HHHHHhhhhhcCCCC---CCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCcc
Q psy9569 41 EESDEEFVKRYVAFFNQPDIDGW-DIRRGLMNLAHDDCV---PDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHD 116 (156)
Q Consensus 41 ~Et~eeF~aRy~~~F~~~~iD~w-e~rrglN~l~~~DlV---PeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~ 116 (156)
..+...|..||.+-++-++ +.. ..+.-+|+....|+. +...|..||+..+.|+++... ....|-..++-...
T Consensus 99 ~~~p~~~l~r~~~~l~l~~-~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~---~~~~i~~~~~v~~~ 174 (207)
T 1c9b_A 99 LITTGDFMSRFCSNLCLPK-QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKR---TQKEIGDIAGVADV 174 (207)
T ss_dssp CCCTHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCC---CHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCC---CHHHHHHHhCCCHH
Confidence 3567889999998887543 322 223345555556664 455677789998888888763 33344445554423
Q ss_pred chhHHHHHhhhhhhHhhCCCCccccCCC
Q psy9569 117 KIWPYIVQEITPTLKELGIETPAQLGYD 144 (156)
Q Consensus 117 ~iY~~~lqElkPtl~ELGI~t~EeLgyd 144 (156)
+|-+. .++| .++||+..|++..-+
T Consensus 175 tI~~~-~~~l---~~~l~~~~p~~~~~~ 198 (207)
T 1c9b_A 175 TIRQS-YRLI---YPRAPDLFPTDFKFD 198 (207)
T ss_dssp HHHHH-HHHH---GGGHHHHSCSSCCCS
T ss_pred HHHHH-HHHH---HHHHHHhChHHHccc
Confidence 33332 2333 345566668877543
No 9
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=56.75 E-value=19 Score=26.70 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=41.5
Q ss_pred cHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q psy9569 61 DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKT 111 (156)
Q Consensus 61 D~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~ 111 (156)
|.--+|-|+-.+.-.|=||...+|..|...|++..+ .-+-+|.-||=++.
T Consensus 82 ~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~-~~~~~fVNgVLr~i 131 (149)
T 3r2d_A 82 ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYAD-EKAGKFVNGVLSAI 131 (149)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCC-CCccccchHHhhHH
Confidence 344678899899888889999999999999999875 45778888887665
No 10
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=56.35 E-value=18 Score=24.40 Aligned_cols=62 Identities=10% Similarity=-0.070 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCccccCCC
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYD 144 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgyd 144 (156)
+.+...--....+.+++..|+..++.+-....+. .....+++.|+-..+-.+..|+...|-|
T Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (177)
T 2e2e_A 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQLVESINMAKLLQRRSDLEHHHHH 176 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT--SCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--ccHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4444444456778999999999999887777665 3455777888877777777777766654
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=54.94 E-value=34 Score=22.62 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhC
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELG 134 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 134 (156)
|.+...-=.+....+|+..|+..|+.......+. ..|..+.+++.-.++.+.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ--PAHEALAARAGAMLEAVT 137 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--cchHHHHHHHHHHHHHHH
Confidence 4444444456778999999999999887777654 457777777777776653
No 12
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=51.10 E-value=50 Score=28.29 Aligned_cols=60 Identities=10% Similarity=-0.112 Sum_probs=38.4
Q ss_pred HHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-cCCCccchhHHHHH
Q psy9569 64 DIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFK-TGGSHDKIWPYIVQ 124 (156)
Q Consensus 64 e~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K-~~~~~~~iY~~~lq 124 (156)
+..+-++.+-...+.|......+.+.+|-+.+++..|.++|+.++.+ +.+. ...|..+++
T Consensus 123 ~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~ 183 (501)
T 4g26_A 123 MAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHH
Confidence 44444555556677777777777777777777788888777776654 2222 345555543
No 13
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=48.37 E-value=16 Score=24.76 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhH
Q psy9569 97 YALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLK 131 (156)
Q Consensus 97 ~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ 131 (156)
+.-|+.+|..||.+..++ .++|...++-++.-..
T Consensus 4 ~~dA~~yl~~VK~~F~~~-p~~Y~~FL~im~~~k~ 37 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKS 37 (77)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHH
Confidence 567999999999999986 6899999988876543
No 14
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=47.78 E-value=41 Score=26.63 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=60.8
Q ss_pred cccccCCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHH-HHhhhhHHHHHHHHHHhhhh
Q psy9569 32 PIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKA-IRRVNDYALAIRFLETTEFK 110 (156)
Q Consensus 32 ~~r~~s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrA-cRRvND~alAVR~lE~iK~K 110 (156)
++-+|++-+-..-|.|.---.+..+-..---|-+||++.-|-+ .+.|.-.|-.+||+| |--+|.-+.----++.+|+-
T Consensus 38 svt~m~smhf~are~flgvirkalepd~stpf~vrrafd~lra-eil~nd~iks~alkaqcsdi~~~~elk~kidtlke~ 116 (177)
T 1q5z_A 38 SVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRRAFDGLRA-EILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEV 116 (177)
T ss_dssp CHHHHTCTTCCHHHHHHHHHHHHTCBCTTSCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHH
T ss_pred ccchhhhhcccHHHHHHHHHHHhcCCCCCCCccHHHhhhhhhh-hhcCCchHHHHHHHHHhhhcccCHHHHHHHHHHHHH
Confidence 3444554444566777777777777555568999999988765 578999999999997 88999988776667777766
Q ss_pred cCCC
Q psy9569 111 TGGS 114 (156)
Q Consensus 111 ~~~~ 114 (156)
.--+
T Consensus 117 it~h 120 (177)
T 1q5z_A 117 ITHH 120 (177)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 5443
No 15
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=45.71 E-value=39 Score=25.10 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHhhCCCCC---cHHHHHHHhhhhhcCCCC---CCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCc
Q psy9569 42 ESDEEFVKRYVAFFNQPDI---DGWDIRRGLMNLAHDDCV---PDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSH 115 (156)
Q Consensus 42 Et~eeF~aRy~~~F~~~~i---D~we~rrglN~l~~~DlV---PeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~ 115 (156)
.+...|..||.+-++-++- ..|++ +++....+++ +...|..|||..+-|++++.. .+..|-.-+|-..
T Consensus 106 ~~p~~~i~r~~~~L~l~~~v~~~A~~i---~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~---t~~ei~~~~~vs~ 179 (200)
T 1ais_B 106 VKPTDYVNKFADELGLSEKVRRRAIEI---LDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKR---TQREVAEVARVTE 179 (200)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHHHHHHH---HHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCC---CHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHH---HHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCC---CHHHHHHHhCCCH
Confidence 6788899999998874421 23333 3444444443 445677788988888888763 4445555555442
Q ss_pred cchhHHHHHhhhhhhHhhCCCC
Q psy9569 116 DKIWPYIVQEITPTLKELGIET 137 (156)
Q Consensus 116 ~~iY~~~lqElkPtl~ELGI~t 137 (156)
.+|-+. .|-..++|||+.
T Consensus 180 ~ti~~~----~~~l~~~l~~~~ 197 (200)
T 1ais_B 180 VTVRNR----YKELVEKLKIKV 197 (200)
T ss_dssp HHHHHH----HHHHHHHHTCCC
T ss_pred HHHHHH----HHHHHHHcCCCC
Confidence 333322 233445667654
No 16
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=45.34 E-value=34 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.9
Q ss_pred cHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q psy9569 61 DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKT 111 (156)
Q Consensus 61 D~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~ 111 (156)
|..-||=|+-.+.-.|=||...+|..|...|++..+ +-+-+|.-||=+|.
T Consensus 81 ~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~-~~~~~fVNgVL~~i 130 (142)
T 1tzv_A 81 DRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGT-ENSGKFVNGILDRI 130 (142)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCC-CcchhhHHHHHHHH
Confidence 456678888888877779999999999999999864 44568888877665
No 17
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=44.60 E-value=34 Score=30.05 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHH------HHHhhhhHHHHH-HHHHHhhhhcCCC-cc----chhHHHHHhhhhhhHhhCCCCccccCC
Q psy9569 81 PEIIIAALK------AIRRVNDYALAI-RFLETTEFKTGGS-HD----KIWPYIVQEITPTLKELGIETPAQLGY 143 (156)
Q Consensus 81 P~Ii~AALr------AcRRvND~alAV-R~lE~iK~K~~~~-~~----~iY~~~lqElkPtl~ELGI~t~EeLgy 143 (156)
|++|.+|.+ +|+-+.+++.+. +|.+.++-...+. .. ..+... -|+-.|.=|||+.||.|-.
T Consensus 384 ~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ape~m~~ 456 (464)
T 3fnr_A 384 KAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAKNKMEH 456 (464)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCCSCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCchHHhhh
Confidence 556666653 677777777654 5666655443322 00 133344 6888888899999999843
No 18
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=41.49 E-value=68 Score=20.53 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHH------------------HHHhhhhhhHhhCCCC-cccc
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPY------------------IVQEITPTLKELGIET-PAQL 141 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~------------------~lqElkPtl~ELGI~t-~EeL 141 (156)
+.+....-.+..+.+++..|+..++..-....+. ...+.+ +.+....+.+.+++.. .+++
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 159 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIED 159 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccchhhccccc
Confidence 5555555567788999999999998877665544 233211 1223445566667544 3778
Q ss_pred CCCCccc
Q psy9569 142 GYDKPEL 148 (156)
Q Consensus 142 gydkpel 148 (156)
+|..|+|
T Consensus 160 ~~~~p~~ 166 (166)
T 1a17_A 160 EYSGPKL 166 (166)
T ss_dssp SCC----
T ss_pred ccccCCC
Confidence 8888875
No 19
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=41.11 E-value=8.9 Score=25.75 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=17.2
Q ss_pred HHhhhhhhHhhCCCCccccCCCC-ccc
Q psy9569 123 VQEITPTLKELGIETPAQLGYDK-PEL 148 (156)
Q Consensus 123 lqElkPtl~ELGI~t~EeLgydk-pel 148 (156)
-+.++|+|+++|+...++...|+ ||+
T Consensus 14 C~~~~~~L~~~~~~~~~~vdid~~~~l 40 (87)
T 1ttz_A 14 CDQAVEALAQARAGAFFSVFIDDDAAL 40 (87)
T ss_dssp HHHHHHHHHHTTCCCEEEEECTTCHHH
T ss_pred HHHHHHHHHHHHHhheEEEECCCCHHH
Confidence 35678888888876556666654 444
No 20
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=40.59 E-value=18 Score=30.41 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 120 PYIVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 120 ~~~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
...+++|+..++++|+| +..|||.++.++
T Consensus 336 ~~~~~~i~~l~~~lglP~~l~elgi~~~~i 365 (407)
T 1vlj_A 336 LKGIEAFKNWLKKVGAPVSLKDAGIPEEDI 365 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCSTGGGTCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 45678899999999999 589999987554
No 21
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=40.57 E-value=1e+02 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHHHhhCC----CCCcHHHH
Q psy9569 39 AVEESDEEFVKRYVAFFNQ----PDIDGWDI 65 (156)
Q Consensus 39 h~~Et~eeF~aRy~~~F~~----~~iD~we~ 65 (156)
+.+|+|++|..|+.+--.+ .+...|.+
T Consensus 181 GPkEpf~dfVdRl~kalrae~~~~~~~~~~~ 211 (262)
T 1d1d_A 181 GPSESFVDFANRLIKAVEGSDLPPSARAPVI 211 (262)
T ss_dssp CSSSCHHHHHHHHHHHHHTSSCCTTTTTHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhccCcccchhhH
Confidence 5679999999999887644 45567774
No 22
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=40.21 E-value=33 Score=24.82 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=38.3
Q ss_pred cHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q psy9569 61 DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKT 111 (156)
Q Consensus 61 D~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~ 111 (156)
|..-||=|+-.+.-.|=||...+|..|...|++..+- -+-+|.-||=++.
T Consensus 83 ~r~iLrla~yEll~~~~iP~~vaInEaVelaK~~~~~-~~~~fVNgVLr~i 132 (141)
T 3d3b_A 83 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE-DSHKFVNGVLDKA 132 (141)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCC-CchHHHHHHHHHH
Confidence 4567888888888776699999999999999998643 2347777766553
No 23
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=39.75 E-value=18 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=18.9
Q ss_pred hcCCCccchhHHHHHhhhh------hhHhhCCC
Q psy9569 110 KTGGSHDKIWPYIVQEITP------TLKELGIE 136 (156)
Q Consensus 110 K~~~~~~~iY~~~lqElkP------tl~ELGI~ 136 (156)
-||.-...-|+.|++-++. +|++||+.
T Consensus 8 TCGkvi~~~we~y~~~~~~~~~~~~~LD~Lg~~ 40 (55)
T 1ef4_A 8 SCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLK 40 (55)
T ss_dssp CTTSCCHHHHHHHHHHHHHTCCHHHHHHHHTCS
T ss_pred CCCCChhHHHHHHHHHHHcCCCHHHHHHHcCCc
Confidence 3666666677777766654 58888875
No 24
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=39.07 E-value=21 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=24.2
Q ss_pred HHHHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 120 PYIVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 120 ~~~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
...+++|+..++++|+| +..|+|.++.++
T Consensus 321 ~~~~~~i~~l~~~lglp~~l~~~gi~~~~~ 350 (386)
T 1rrm_A 321 NAAVEAVFALNRDVGIPPHLRDVGVRKEDI 350 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSSGGGGTCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCHHhcCCCHHHH
Confidence 45678899999999999 589999987654
No 25
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=37.72 E-value=18 Score=24.77 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhH
Q psy9569 98 ALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLK 131 (156)
Q Consensus 98 alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ 131 (156)
.-|+.+|..||.++.++ -++|...++-++.-..
T Consensus 11 ~dA~~yl~~VK~rF~~~-p~~Y~~FL~im~~fk~ 43 (80)
T 2cr7_A 11 EDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKS 43 (80)
T ss_dssp CCSHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHh
Confidence 35889999999999986 6899998887776543
No 26
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=36.86 E-value=38 Score=19.97 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=24.2
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9569 68 GLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFL 104 (156)
Q Consensus 68 glN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~l 104 (156)
.++.|..|- . +...+..||++|. ||...|+-+|
T Consensus 7 ~i~~L~~MG-F-~~~~a~~AL~~~~--~n~e~A~~~L 39 (43)
T 2g3q_A 7 AVEELSGMG-F-TEEEAHNALEKCN--WDLEAATNFL 39 (43)
T ss_dssp HHHHHHTTT-S-CHHHHHHHHHHHT--SCHHHHHHHH
T ss_pred HHHHHHHcC-C-CHHHHHHHHHHhC--cCHHHHHHHH
Confidence 355566665 2 4577888999994 7999999876
No 27
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.69 E-value=26 Score=21.24 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLE 105 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE 105 (156)
..-+..||++| ||...|+-+|-
T Consensus 23 ~~~a~~AL~~~---~n~e~A~~~L~ 44 (47)
T 2ekk_A 23 REHAMEALLNT---STMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHS---CSHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHH
Confidence 46677788888 68999988763
No 28
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=35.26 E-value=93 Score=27.29 Aligned_cols=57 Identities=18% Similarity=0.101 Sum_probs=34.7
Q ss_pred hhCCCCCcHHHHHHHhhh--hhc-CCCCCCH-----------H-HHH---------HHHHHHHhhhhHHHHHHHHHHhhh
Q psy9569 54 FFNQPDIDGWDIRRGLMN--LAH-DDCVPDP-----------E-III---------AALKAIRRVNDYALAIRFLETTEF 109 (156)
Q Consensus 54 ~F~~~~iD~we~rrglN~--l~~-~DlVPeP-----------~-Ii~---------AALrAcRRvND~alAVR~lE~iK~ 109 (156)
++++-.+|.||+.++++. =++ +=+-|.| . ++. .-++++|++||.- .-++.+.|+.
T Consensus 248 ice~~GiDv~eV~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~-~~~vv~~l~~ 326 (444)
T 3vtf_A 248 LAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYM-PRYAVQLLEE 326 (444)
T ss_dssp HHHHTTCCHHHHHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 457788999999999983 222 2344544 2 221 1357899999974 2344555554
Q ss_pred hc
Q psy9569 110 KT 111 (156)
Q Consensus 110 K~ 111 (156)
+.
T Consensus 327 ~~ 328 (444)
T 3vtf_A 327 RL 328 (444)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 29
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=34.60 E-value=22 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=19.2
Q ss_pred hcCCCccchhHHHHHhhh------hhhHhhCCC
Q psy9569 110 KTGGSHDKIWPYIVQEIT------PTLKELGIE 136 (156)
Q Consensus 110 K~~~~~~~iY~~~lqElk------Ptl~ELGI~ 136 (156)
-||.-...-|.+|++.++ -+|++||+.
T Consensus 9 TCGkvi~~k~~~y~~~~~~~~~~g~~LD~Lgl~ 41 (66)
T 4ayb_N 9 TCGSLIADKWQPFITRVNAGENPGKVLDDLGVK 41 (66)
T ss_dssp TTCCBCHHHHHHHHHHHHTTCCHHHHHHHSSCC
T ss_pred CCcHhHHHHHHHHHHHHhcCCCHHHHHHHhCCc
Confidence 367666667888887664 478888864
No 30
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=34.57 E-value=28 Score=29.18 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=24.1
Q ss_pred HHHHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 120 PYIVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 120 ~~~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
+..+++|+..++++|+| +..+||.++.++
T Consensus 345 ~~~~~~i~~l~~~lglP~~l~~lgi~~~~i 374 (408)
T 1oj7_A 345 DAAIAATRNFFEQLGVPTHLSDYGLDGSSI 374 (408)
T ss_dssp HHHHHHHHHHHHHHTCCCSGGGGTCCSTTH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 45788899999999999 578999987654
No 31
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=33.40 E-value=31 Score=25.72 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=41.0
Q ss_pred hcCCCCCCHHH--HHHHHHHHHhhhhHHHHHHHHHHhhhhcCCC-ccchhHHHHHhhhhhh
Q psy9569 73 AHDDCVPDPEI--IIAALKAIRRVNDYALAIRFLETTEFKTGGS-HDKIWPYIVQEITPTL 130 (156)
Q Consensus 73 ~~~DlVPeP~I--i~AALrAcRRvND~alAVR~lE~iK~K~~~~-~~~iY~~~lqElkPtl 130 (156)
.+|||.-+-++ ..+--+--=|..+|..|.-+||.|+.-.+|. .++||..|+.|.|.-|
T Consensus 43 l~~~ll~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 43 EGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKL 103 (106)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHh
Confidence 34444444322 2333344558899999999999999888883 3569999999988655
No 32
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=33.38 E-value=1.1e+02 Score=20.68 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCC
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGI 135 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI 135 (156)
|...-.-=.+....+++..|+..|+..-...++. ..|..+.+++.-.++.|.-
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~l~~l~~ 141 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANX--PEFXELSTRVSSMLEAIKL 141 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC--CcchHHHHHHHHHHHHHHh
Confidence 4444444556778999999999999887777664 5677778888777777654
No 33
>2jv7_A CBP, calcium-binding protein; virulence factor, homodimer, all alpha helical, glycoprotein, secreted, metal binding protein; NMR {Ajellomyces capsulatus}
Probab=33.36 E-value=35 Score=24.31 Aligned_cols=45 Identities=20% Similarity=0.486 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhh-------hHhhCCCCcccc
Q psy9569 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPT-------LKELGIETPAQL 141 (156)
Q Consensus 93 RvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPt-------l~ELGI~t~EeL 141 (156)
-+|||-.+|+.|+..|.-.+=. |-.-|.-|-|+ +.|||.+.|-++
T Consensus 8 A~~~~n~~v~~F~kAksA~~C~----~~~Cl~sLa~ssA~C~aA~aelG~~~~~D~ 59 (78)
T 2jv7_A 8 AFDKYNEAVRVFTQLSSAANCD----WAACLSSLSASSAACIAAVGELGLDVPLDL 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC----CCHHHHHHTTCCHHHHHHHHSSSSTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhccCCC----HHHHHHHHhhHHHHHHHHHHHcCCCcchhH
Confidence 3799999999999999877655 34667778775 678887776543
No 34
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=32.97 E-value=29 Score=28.73 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.3
Q ss_pred HHHHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 120 PYIVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 120 ~~~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
...+++|+..++++|+| +..|||+++.++
T Consensus 325 ~~~~~~i~~l~~~~glp~~l~~~gi~~~~~ 354 (387)
T 3bfj_A 325 EKAIAAITRLSMDIGIPQHLRDLGVKETDF 354 (387)
T ss_dssp HHHHHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 56789999999999999 578999987554
No 35
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=32.77 E-value=51 Score=22.69 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCc
Q psy9569 96 DYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETP 138 (156)
Q Consensus 96 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~ 138 (156)
++.-|+.++-.||.+..++ -++|...|+-|+.-..+ .|+|+
T Consensus 6 ~~~~A~~yv~kVK~rF~~~-p~~Y~~FL~il~~yk~~-~~d~~ 46 (85)
T 1e91_A 6 EFNNAISYVNKIKTRFLDH-PEIYRSFLEILHTYQKE-QLHTK 46 (85)
T ss_dssp HHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHT-TCSSS
T ss_pred cHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHc-ccccc
Confidence 4667999999999999986 68999999999866554 45443
No 36
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=32.51 E-value=27 Score=21.99 Aligned_cols=49 Identities=18% Similarity=0.004 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhC
Q psy9569 83 IIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELG 134 (156)
Q Consensus 83 Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELG 134 (156)
....--.+..+.+++..|+..++..-...... .......++.-.+..||
T Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSR---GDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---ccHHHHHHHHHHHHHhc
Confidence 33333456678999999999999876655432 12345666666666665
No 37
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.13 E-value=58 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=24.3
Q ss_pred HhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9569 68 GLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLE 105 (156)
Q Consensus 68 glN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE 105 (156)
.+..|..|=. +...+..||++|. ||...|+-+|-
T Consensus 12 ~I~~L~~MGF--~~~~a~~AL~~~~--~nve~A~e~L~ 45 (63)
T 1wji_A 12 ALKHITEMGF--SKEASRQALMDNG--NNLEAALNVLL 45 (63)
T ss_dssp HHHHHHTTTC--CHHHHHHHHHHTT--SCHHHHHHHHH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 3555655543 5566788999996 68999998764
No 38
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=32.04 E-value=53 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=24.9
Q ss_pred cchhHHHHHhhhhhhHhhCCCCccccCC
Q psy9569 116 DKIWPYIVQEITPTLKELGIETPAQLGY 143 (156)
Q Consensus 116 ~~iY~~~lqElkPtl~ELGI~t~EeLgy 143 (156)
.+.-+..++.+.|+++++|+..|+.-++
T Consensus 190 ~~Lr~~w~~~v~~~l~~agL~~P~~~~~ 217 (249)
T 1otk_A 190 RTLRAAWEAEVFAGINEATLNVPQEQAY 217 (249)
T ss_dssp GGGHHHHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccc
Confidence 4899999999999999999999987554
No 39
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.03 E-value=21 Score=23.45 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLETT 107 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE~i 107 (156)
+.+|+++|+||. ||...||..|=.+
T Consensus 25 ~~~I~~vL~a~~--gdvd~aI~~LL~m 49 (59)
T 1wgl_A 25 QEVIRSVLEAQR--GNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHTTTT--TCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHcC
Confidence 578888888886 7888888776443
No 40
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=31.93 E-value=30 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=18.4
Q ss_pred hcCCCccchhHHHHHhhhh-------hhHhhCCC
Q psy9569 110 KTGGSHDKIWPYIVQEITP-------TLKELGIE 136 (156)
Q Consensus 110 K~~~~~~~iY~~~lqElkP-------tl~ELGI~ 136 (156)
-||.....-|+.|++-++. +|++||+.
T Consensus 9 TCGkvi~~~we~y~~~~~~g~l~~~~~LD~Lg~~ 42 (70)
T 1twf_J 9 SCGKVVGDKWESYLNLLQEDELDEGTALSRLGLK 42 (70)
T ss_dssp TTCCBCTTCHHHHHHHHHTSCCCHHHHHHHTTCC
T ss_pred CCCCChHHHHHHHHHHHHcCCCCHHHHHHHcCCc
Confidence 4676666667777765554 48999885
No 41
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.18 E-value=33 Score=23.10 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=24.3
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9569 69 LMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLE 105 (156)
Q Consensus 69 lN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE 105 (156)
+..|..|- -+...+..||++|. ||...||-+|-
T Consensus 33 v~~L~~MG--F~~~~a~~AL~~t~--~nve~Ave~L~ 65 (73)
T 1wiv_A 33 VDTLLSFG--FAEDVARKALKASG--GDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHT--CCHHHHHHHHHHTT--SCHHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 44454444 25777889999998 69999998874
No 42
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.76 E-value=47 Score=20.50 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9569 67 RGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLE 105 (156)
Q Consensus 67 rglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE 105 (156)
..+..|..|=. +..-+..||++|- ||...|+-+|-
T Consensus 10 ~~i~~L~~MGF--~~~~a~~AL~~~~--~n~e~A~e~L~ 44 (49)
T 1ify_A 10 TMLTEIMSMGY--ERERVVAALRASY--NNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHTTC--CHHHHHHHHHTTT--SCSHHHHHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 34566666653 7788889999987 78999988764
No 43
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=30.66 E-value=60 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhH
Q psy9569 96 DYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLK 131 (156)
Q Consensus 96 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ 131 (156)
.+.-|+.++-.||.++.++ -++|...|+-|+...+
T Consensus 9 ~~~~A~~YvnkVK~rF~~~-p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQ-PDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHh
Confidence 4667999999999999986 6899999988887654
No 44
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=30.52 E-value=47 Score=24.69 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=41.4
Q ss_pred cHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCC
Q psy9569 61 DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGG 113 (156)
Q Consensus 61 D~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~ 113 (156)
|..-||-|+-.++-.|=||...+|..|...|++..+ .-+-+|.-||=++...
T Consensus 89 ~r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~-~~~~~fVNgVLr~i~r 140 (156)
T 1eyv_A 89 DRAILRVSVWELLHAADVPEPVVVDEAVQLAKELST-DDSPGFVNGVLGQVML 140 (156)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSC-TTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCC-CccccchHHHHHHHHH
Confidence 355688888888887779999999999999999864 3456888888887754
No 45
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=29.41 E-value=29 Score=28.89 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 122 IVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 122 ~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
.++.|+-.+++|||| +..|+|.++-++
T Consensus 289 ~~~~i~~l~~~lglP~~L~e~Gi~~~~i 316 (353)
T 3hl0_A 289 AGAGLFDFAARLGAPSSLAALGVGADDL 316 (353)
T ss_dssp HHHHHHHHHHHHTCCCCTGGGTCCGGGH
T ss_pred HHHHHHHHHHHcCCCccHHhcCCCHHHH
Confidence 367899999999999 589999987544
No 46
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=29.20 E-value=38 Score=21.34 Aligned_cols=53 Identities=9% Similarity=-0.185 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCC
Q psy9569 82 EIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIET 137 (156)
Q Consensus 82 ~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t 137 (156)
.+...-=.+..+.+++..|+..++..-...... --.....|+.-.|..+|...
T Consensus 42 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~---~~~~~~~~l~~~l~~~~~~~ 94 (100)
T 3ma5_A 42 GTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE---GTQKDLSELQDAKLKAEGLE 94 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC---CchhHHHHHHHHHHHccccc
Confidence 344444457789999999999998665544332 12356778888888777543
No 47
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.98 E-value=34 Score=23.74 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=32.0
Q ss_pred HHHHHHHHH---hhhhHHHHHHHHHHhhhhc-------CC-CccchhHHHHHhhh
Q psy9569 84 IIAALKAIR---RVNDYALAIRFLETTEFKT-------GG-SHDKIWPYIVQEIT 127 (156)
Q Consensus 84 i~AALrAcR---RvND~alAVR~lE~iK~K~-------~~-~~~~iY~~~lqElk 127 (156)
|...++-+| .+.||.+|+-+.+++.... .+ ..+..|..+.|||.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~ 66 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEIN 66 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHH
Confidence 445566666 6899999999999987653 33 23457888888875
No 48
>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4
Probab=28.66 E-value=58 Score=25.98 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHh-h---hhHHHHHHHHHHhhhhcCCC-ccchhHHHHHhhh
Q psy9569 82 EIIIAALKAIRR-V---NDYALAIRFLETTEFKTGGS-HDKIWPYIVQEIT 127 (156)
Q Consensus 82 ~Ii~AALrAcRR-v---ND~alAVR~lE~iK~K~~~~-~~~iY~~~lqElk 127 (156)
.||+|+..|.|= + .++-.=++.+..+=.|||++ .++.+.++++.+.
T Consensus 171 avIEa~V~aTRl~~~~~~~l~~~i~~~~~~v~K~gg~~e~ea~~~l~~~~~ 221 (233)
T 2ptf_A 171 AVIESLIAYTRAEFSDPLVLRERIAEMNRVARKVGGPREKEAMRRIIQALE 221 (233)
T ss_dssp HHHHHHHHHHTC----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 678877766651 2 23455567777888899875 2334888887664
No 49
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.62 E-value=49 Score=22.29 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q psy9569 80 DPEIIIAALKAIRRVNDYALAIRFLETTEF 109 (156)
Q Consensus 80 eP~Ii~AALrAcRRvND~alAVR~lE~iK~ 109 (156)
++.+|++.|++|. ||...||.-|=.+..
T Consensus 33 D~~vI~~vL~a~~--G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 33 DYDIIECVLRANS--GAVDATIDQLLQMNL 60 (67)
T ss_dssp CHHHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC--CCHHHHHHHHHhcCC
Confidence 3678888888886 677777776654443
No 50
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=28.58 E-value=14 Score=31.42 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHH--h--hhhHHHH--HHHHHHhhh-hcCCCcc-chhHHHHHhhhhhhHhhCCCCccccCCC
Q psy9569 79 PDPEIIIAALKAIR--R--VNDYALA--IRFLETTEF-KTGGSHD-KIWPYIVQEITPTLKELGIETPAQLGYD 144 (156)
Q Consensus 79 PeP~Ii~AALrAcR--R--vND~alA--VR~lE~iK~-K~~~~~~-~iY~~~lqElkPtl~ELGI~t~EeLgyd 144 (156)
..|+|+++||++|- + +|+...- -++++.++. +|.--.- -..-.+++++--.+.++||+ +|++=+|
T Consensus 142 ~~~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~-~e~IIlD 214 (323)
T 4djd_D 142 KDHEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLP-LDHIVID 214 (323)
T ss_dssp HHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCC-GGGEEEE
T ss_pred CCHHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCC-HHHEEEe
Confidence 35999999999993 3 5665433 355665553 2221100 01125778888888999997 4555333
No 51
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.52 E-value=88 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=24.7
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9569 69 LMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLE 105 (156)
Q Consensus 69 lN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE 105 (156)
++.|..|= -+...+..||++|- ||...|+-+|-
T Consensus 33 I~~L~eMG--F~r~~a~~AL~~~~--~nve~Ave~Ll 65 (73)
T 1vg5_A 33 IQKLVAMG--FDRTQVEVALAAAD--DDLTVAVEILM 65 (73)
T ss_dssp HHHHHTTT--CCHHHHHHHHHHHT--SCHHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 44555554 46778888999997 79999998874
No 52
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=28.06 E-value=54 Score=18.53 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=21.7
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9569 69 LMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFL 104 (156)
Q Consensus 69 lN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~l 104 (156)
+..|..|- + +..-+..||++|. ||...|+-+|
T Consensus 8 i~~L~~mG-f-~~~~a~~AL~~~~--~n~e~A~~~L 39 (40)
T 1z96_A 8 IAQLVSMG-F-DPLEAAQALDAAN--GDLDVAASFL 39 (40)
T ss_dssp HHHHHHTT-C-CHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHcC-C-CHHHHHHHHHHcC--CCHHHHHHHH
Confidence 44454442 2 4567788999994 6899988765
No 53
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=27.58 E-value=21 Score=28.87 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=18.7
Q ss_pred HHHHHhhhhHHHHHHHHHHhhh
Q psy9569 88 LKAIRRVNDYALAIRFLETTEF 109 (156)
Q Consensus 88 LrAcRRvND~alAVR~lE~iK~ 109 (156)
-+.||.+|+|.+..-|+-|+..
T Consensus 111 A~~c~~l~Nfnsl~AIisgL~s 132 (271)
T 3qxl_A 111 AKKLLELNNLHSLMSVVSALQS 132 (271)
T ss_dssp HHHHHHTTBHHHHHHHHHHHTS
T ss_pred HHHHHhcCCchHHHHHHHHccc
Confidence 3569999999999999988763
No 54
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=26.16 E-value=1e+02 Score=27.96 Aligned_cols=61 Identities=8% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHH------HHHHhhhhHHHHH-HHHHHhhhhcCCC-cc----chhHHHHHhhhhhhHhhCCCCcccc
Q psy9569 81 PEIIIAAL------KAIRRVNDYALAI-RFLETTEFKTGGS-HD----KIWPYIVQEITPTLKELGIETPAQL 141 (156)
Q Consensus 81 P~Ii~AAL------rAcRRvND~alAV-R~lE~iK~K~~~~-~~----~iY~~~lqElkPtl~ELGI~t~EeL 141 (156)
|++|+.|. +.|+-+-++|.+. +|.+.++-.-++. .+ ..+...-+-|+--|.=|||++||.|
T Consensus 535 p~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~perM 607 (607)
T 1f7u_A 535 PDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM 607 (607)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 66777666 4566666665554 3344443332221 00 2566677888889999999999976
No 55
>2nr4_A Conserved hypothetical protein; structural genomics, unknown function, flavoprotein, PSI-2, protein structure initiative; HET: FMN; 1.85A {Methanosarcina mazei} SCOP: b.45.1.4
Probab=26.03 E-value=47 Score=26.02 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHh-h---hhHHHHHHHHHHhhhhcCC-CccchhHHHHHhh
Q psy9569 82 EIIIAALKAIRR-V---NDYALAIRFLETTEFKTGG-SHDKIWPYIVQEI 126 (156)
Q Consensus 82 ~Ii~AALrAcRR-v---ND~alAVR~lE~iK~K~~~-~~~~iY~~~lqEl 126 (156)
.|||||..|.|= + ..+-.=++.+..+=.|||+ +.++.+.++++.+
T Consensus 162 aviEa~V~~tRl~~~~~~~~~~~i~~~~~~v~K~gg~~e~ea~~~l~~~~ 211 (213)
T 2nr4_A 162 AVLEATVHATRYQLTGEEKYLELIRHYESLASKCGGDAEKKAMKLIYEAL 211 (213)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 689988887772 2 2355556677777799976 3345677766543
No 56
>1baj_A GAG polyprotein; capsid, HIV-1 assembly protein, viral protein; 2.60A {Human immunodeficiency virus 1} SCOP: a.28.3.1
Probab=25.81 E-value=43 Score=23.77 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhc-CCCCCCHHHHHHH----------HHHHHhhhhHH
Q psy9569 39 AVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAH-DDCVPDPEIIIAA----------LKAIRRVNDYA 98 (156)
Q Consensus 39 h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~-~DlVPeP~Ii~AA----------LrAcRRvND~a 98 (156)
+..|+|++|..|+-+--... +-.=+++.+|.+-.. .-.-|+=+-+-.+ ++||+.|.+-.
T Consensus 12 Gpkepf~d~v~R~~k~l~~e-~~~~~vK~~~~~tL~~qnanp~Ck~~lk~l~~~~~l~e~~~ac~~vg~p~ 81 (101)
T 1baj_A 12 GPKEPFRDYVDRFYKTLRAE-QASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPG 81 (101)
T ss_dssp CSSCCHHHHHHHHHHHHHHT-TCCHHHHHHHHHTHHHHTSCHHHHHHHHHHCSSCCHHHHHHHC-------
T ss_pred CCCCcHHHHHHHHHHHHHHh-hccHHHHHHHhhhHHHHhhchhhhHHHHccCCCCCHHHHHHhccccCCcc
Confidence 45799999999987655432 344456666654332 2223333333333 46777765543
No 57
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=25.70 E-value=38 Score=28.29 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=22.4
Q ss_pred HHHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 122 IVQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 122 ~lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
.++.|+-.+++|||| +..|+|+++-++
T Consensus 294 ~~~~i~~l~~~lglP~~L~e~Gi~~~~i 321 (358)
T 3jzd_A 294 AAATLFDLAQRHGAPVALRDIGMREEDL 321 (358)
T ss_dssp HHHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHHHcCCCCCHHHcCCCHHHH
Confidence 358899999999999 589999987554
No 58
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=25.58 E-value=35 Score=26.80 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHH---HHHHHHHhhhhHHHHHHHHHHhhh
Q psy9569 48 VKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIII---AALKAIRRVNDYALAIRFLETTEF 109 (156)
Q Consensus 48 ~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~---AALrAcRRvND~alAVR~lE~iK~ 109 (156)
-.++.+.||. +-.|-..--+.. -|+-.--++|. .-.+.||.+|+|.+..-|+-|+..
T Consensus 46 i~~~i~~fN~--ls~wV~~~Il~~---~~~~~Ra~~i~~fI~iA~~~~~l~Nfns~~aI~~gL~~ 105 (240)
T 2ije_S 46 IMKTTKHFNH--VSNFIASEIIRN---EDISARASAIEKWVAVADICRCLHNYNAVLEITSSINR 105 (240)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTS
T ss_pred HHHHHHHHHH--HHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHhcc
Confidence 4577778876 355654433321 11111123443 234679999999999999999864
No 59
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=25.49 E-value=39 Score=28.38 Aligned_cols=26 Identities=4% Similarity=0.207 Sum_probs=21.6
Q ss_pred HHhhhhhhHhhCCC-CccccCCCCccc
Q psy9569 123 VQEITPTLKELGIE-TPAQLGYDKPEL 148 (156)
Q Consensus 123 lqElkPtl~ELGI~-t~EeLgydkpel 148 (156)
++.|+-.+++|||| +..|+|.++-++
T Consensus 292 ~~~i~~l~~~lglP~~L~e~Gi~~~~i 318 (364)
T 3iv7_A 292 LEGLQRLRLSVNAPKRLSDYGFEASGI 318 (364)
T ss_dssp HHHHHHHHHHTTCCCCGGGGTCCGGGH
T ss_pred HHHHHHHHHHcCCCCcHHHcCCCHHHH
Confidence 57788899999999 689999987554
No 60
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=25.42 E-value=28 Score=25.53 Aligned_cols=9 Identities=67% Similarity=0.619 Sum_probs=8.4
Q ss_pred HHHHHHHHh
Q psy9569 85 IAALKAIRR 93 (156)
Q Consensus 85 ~AALrAcRR 93 (156)
+|||+|+||
T Consensus 26 qAALKAA~R 34 (93)
T 1t23_A 26 QAALKAANR 34 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 699999999
No 61
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=25.04 E-value=29 Score=22.92 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHH------hhhhHHHHHHHHH
Q psy9569 77 CVPDPEIIIAALKAIR------RVNDYALAIRFLE 105 (156)
Q Consensus 77 lVPeP~Ii~AALrAcR------RvND~alAVR~lE 105 (156)
++|+|.-|..|-|.|| -.-|.++|++-|.
T Consensus 10 ~~~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~ 44 (53)
T 2rkl_A 10 IMDRASKIEQIQKLAKYAISALNYEDLPTAKDELT 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 4688999999999998 4668888887765
No 62
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}
Probab=24.19 E-value=48 Score=23.05 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHhhh
Q psy9569 78 VPDPEIIIAALKAIRRVN 95 (156)
Q Consensus 78 VPeP~Ii~AALrAcRRvN 95 (156)
-|.|.+...||+.|+++|
T Consensus 152 KP~~~~~~~~l~~~~~lg 169 (240)
T 3smv_A 152 KPNPNNFTYMIDALAKAG 169 (240)
T ss_dssp TTSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 599999999988887654
No 63
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=23.90 E-value=52 Score=27.81 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.1
Q ss_pred HHHHHhhhhhhHhhCCC-CccccCCC
Q psy9569 120 PYIVQEITPTLKELGIE-TPAQLGYD 144 (156)
Q Consensus 120 ~~~lqElkPtl~ELGI~-t~EeLgyd 144 (156)
...+++|+..+++|||| +..|||.+
T Consensus 314 ~~~i~~i~~l~~~lglP~~L~elGi~ 339 (387)
T 3uhj_A 314 RAEIEAMIRFCRSVGLPTKLADLGIV 339 (387)
T ss_dssp HHHHHHHHHHHHHHTCCCSGGGGTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHcCCC
Confidence 45678999999999999 68999998
No 64
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=23.79 E-value=34 Score=25.75 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=13.7
Q ss_pred HHhhhhhhHhhCCCC
Q psy9569 123 VQEITPTLKELGIET 137 (156)
Q Consensus 123 lqElkPtl~ELGI~t 137 (156)
+.|||.+|..||+|-
T Consensus 22 ikelkdvl~~lgl~k 36 (110)
T 2rno_A 22 IKELKDILNQLGLPK 36 (110)
T ss_dssp HHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHhCCcc
Confidence 789999999999984
No 65
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=23.53 E-value=92 Score=22.46 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHh
Q psy9569 96 DYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKE 132 (156)
Q Consensus 96 D~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~E 132 (156)
+|.-|+.++-.||....++ -++|...|+-|+.-..+
T Consensus 6 ~~~dA~~YvnkVK~rF~d~-p~vY~~FL~IL~~yk~~ 41 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDH-PEIYRSFLEILHTYQKE 41 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHhc
Confidence 4567999999999999986 68999999988866554
No 66
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=23.34 E-value=16 Score=27.25 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhcCC--------C----ccchhHHHHHhh-------hhhhHhhC--CCCccccCCCC
Q psy9569 100 AIRFLETTEFKTGG--------S----HDKIWPYIVQEI-------TPTLKELG--IETPAQLGYDK 145 (156)
Q Consensus 100 AVR~lE~iK~K~~~--------~----~~~iY~~~lqEl-------kPtl~ELG--I~t~EeLgydk 145 (156)
-+|||+.|..|..- . -.+-|.++-.++ .|.++..| |--.||||+|-
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL~G~eayef~~e~v~~e~g~e~~~l~~s~LkV~~ieELG~DA 81 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDA 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEECHHHHHHHHHHHHHHHTCCCCCCEETTEEEEECGGGTTEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEcHHHHHHHHHHHhHhhccccchhhccCceEEEHHhcCCce
Confidence 36888888777531 0 125688877665 45566666 45679999984
No 67
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=22.99 E-value=40 Score=22.84 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=17.6
Q ss_pred hhHHHHHhhhhhhHhhCCCCccc
Q psy9569 118 IWPYIVQEITPTLKELGIETPAQ 140 (156)
Q Consensus 118 iY~~~lqElkPtl~ELGI~t~Ee 140 (156)
.=+.-++||+-.|+++|++.+++
T Consensus 49 ~G~kSl~EI~~~L~~~gl~l~~~ 71 (73)
T 1z3e_B 49 LGRKSLEEVKAKLEELGLGLRKD 71 (73)
T ss_dssp CCHHHHHHHHHHHHHTTCCCC--
T ss_pred CCHHHHHHHHHHHHHhCCCCCCC
Confidence 34566899999999999987654
No 68
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A
Probab=22.89 E-value=3.2e+02 Score=22.52 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCccccC
Q psy9569 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLG 142 (156)
Q Consensus 93 RvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLg 142 (156)
|+++|...+|++-|=- .|+.......+.-+.--+-.++-||++.-+.|.
T Consensus 186 r~~gfg~tt~iINGGl-ECg~~~~~~~~dRi~~Y~r~~~~Lgv~~G~nl~ 234 (242)
T 3w3e_A 186 RVPGFGVITNIINGGL-ECGKGPTPASGDRIGFYKRYCDVFGVSYGPNLN 234 (242)
T ss_dssp CCSSHHHHHHHHHHHH-HSSSSCCHHHHHHHHHHHHHHHHHTCCCCSCCC
T ss_pred ccCChhhheeeecCcc-ccCCCCchHHHHHHHHHHHHHHHhCCCCCCCcC
Confidence 5688999999998632 265542344555556666677889999776663
No 69
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=22.54 E-value=1.5e+02 Score=23.78 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=44.2
Q ss_pred hhhcCCCCCCHHHHHH----HHHHH----------Hh----hhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHh
Q psy9569 71 NLAHDDCVPDPEIIIA----ALKAI----------RR----VNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKE 132 (156)
Q Consensus 71 ~l~~~DlVPeP~Ii~A----ALrAc----------RR----vND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~E 132 (156)
+..+.|||-.|+.|.. |.+++ .. ..||...+|++-++ -|+........--+.--+-.++-
T Consensus 116 ~~lg~Dll~nPdlva~dp~~a~~sA~wfW~t~~~~~~~~~~~~gfg~tt~~ING~--eC~~~~~~~~~dRi~~Y~r~~~~ 193 (204)
T 3hbe_X 116 KSIGFDGLNNPEKVGQDSTISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAINSM--ECNGGNSGEVSSRVNYYKKICSQ 193 (204)
T ss_dssp HHHTSCTTTCGGGGGTCHHHHHHHHHHHHHHSSSHHHHHTTTCHHHHHHHHHHGG--GTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhhCHHHHHHHHHhhhccCCCHHHHhccCCCHHHHHHHHhcc--ccCCCCchhHHHHHHHHHHHHHH
Confidence 4457899988887753 44433 22 34678888888844 47654334555556666677788
Q ss_pred hCCCCcccc
Q psy9569 133 LGIETPAQL 141 (156)
Q Consensus 133 LGI~t~EeL 141 (156)
||++.-+.|
T Consensus 194 Lgv~~g~nl 202 (204)
T 3hbe_X 194 LGVDPGANV 202 (204)
T ss_dssp HTCCCCSCC
T ss_pred hCCCCCCCC
Confidence 999865544
No 70
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=22.30 E-value=24 Score=26.30 Aligned_cols=21 Identities=14% Similarity=0.437 Sum_probs=17.3
Q ss_pred hhhhhHhhCCCCccccCCCCcc
Q psy9569 126 ITPTLKELGIETPAQLGYDKPE 147 (156)
Q Consensus 126 lkPtl~ELGI~t~EeLgydkpe 147 (156)
+.-.|+.|||+ |+=+|||+-|
T Consensus 97 m~~mLk~L~Id-~~liGyD~ee 117 (122)
T 3viq_A 97 MSMFLNQFGVP-VHLMSFDEEN 117 (122)
T ss_dssp HHHHHHHTTCC-TTTSCEETTT
T ss_pred HHHHHHHcCCC-HHHcCCCCcc
Confidence 44567899999 8999999865
No 71
>2iml_A Hypothetical protein; FMN binding, PSI-2, structural genomics, protein structure initiative; HET: FMN; 1.65A {Archaeoglobus fulgidus} SCOP: b.45.1.4
Probab=22.08 E-value=1e+02 Score=23.91 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH-hh--h-----hHHHHHHHHHHhhhhcCCC-ccchhHHHHHhhh
Q psy9569 82 EIIIAALKAIR-RV--N-----DYALAIRFLETTEFKTGGS-HDKIWPYIVQEIT 127 (156)
Q Consensus 82 ~Ii~AALrAcR-Rv--N-----D~alAVR~lE~iK~K~~~~-~~~iY~~~lqElk 127 (156)
.|||||.-|.| .+ + ++-.=++.+..+=.|||++ .++.|.++++.+.
T Consensus 137 avIEa~V~~TRl~~~~~~~~~~~~~~~i~~~~~~v~K~gg~~e~ea~~~l~~~~~ 191 (199)
T 2iml_A 137 AVIEALVHATRYVAIKSDERRKELLERIHYYREIVQKCGSEREKRAFEIIMEKIG 191 (199)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccChhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 68998888887 22 2 2566677788888899984 3457888876654
No 72
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=21.89 E-value=2.5e+02 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.6
Q ss_pred CCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCC
Q psy9569 76 DCVPD--PEIIIAALKAIRRVNDYALAIRFLETTEFKTGG 113 (156)
Q Consensus 76 DlVPe--P~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~ 113 (156)
..-|. +.+...-..+|.+.+++..|+.+++.+.....+
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34566 778888889999999999999999887766543
No 73
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=21.65 E-value=1.5e+02 Score=22.41 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCC
Q psy9569 90 AIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGI 135 (156)
Q Consensus 90 AcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI 135 (156)
++=|+.||..|.+.++.+-..=.++ .|=..+.+.|+-.+++=|+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n--~QA~~Lk~~ie~~~~kdgl 123 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQN--NQAKELERLIDKAMKKDGL 123 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHhhH
Confidence 4579999999999999998877665 6888888888888877665
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=21.45 E-value=2.6e+02 Score=20.86 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=40.0
Q ss_pred HHHHHhhhhhcCC-CCC--CHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCccc
Q psy9569 64 DIRRGLMNLAHDD-CVP--DPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQ 140 (156)
Q Consensus 64 e~rrglN~l~~~D-lVP--eP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~Ee 140 (156)
+.+.-++...... +-| .+.+...-+..-++.+|+..|..+++.....+.+....-+-..+....++++ |.=.++++
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~r~~~l~-~~P~~~~~ 299 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMD-LYPCSASE 299 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHHHTTTCBTT-BCSSCHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHHHHHHHhcc-cCCCCHHH
Confidence 4444444444432 222 3455555566666777777777777777666665423333344444444444 44444444
No 75
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.08 E-value=70 Score=32.44 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCC
Q psy9569 62 GWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIE 136 (156)
Q Consensus 62 ~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~ 136 (156)
.|||+|++. .=+.|++.-+++-++|.+-|..|.++|--+-+.-.. ++.|. ++--++++||-+
T Consensus 1272 ~~el~k~~d-------~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~--~~~~~----~~~~~~~~l~w~ 1333 (1354)
T 3lxu_X 1272 YTEIIKFVD-------ANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT--RDHFV----ELAAINGALGHE 1333 (1354)
T ss_dssp HHHHTTSSC-------TTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC--HHHHH----HHHHHHHHHSCH
T ss_pred HHHHHhhcc-------cCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHH----HHHHHHHHcCCH
Confidence 356666653 335699999999999999999999998765443333 36554 444566777753
No 76
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=20.86 E-value=1.1e+02 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=22.2
Q ss_pred cchhHHHHHh-----hhhhhHhhCCCCccccC
Q psy9569 116 DKIWPYIVQE-----ITPTLKELGIETPAQLG 142 (156)
Q Consensus 116 ~~iY~~~lqE-----lkPtl~ELGI~t~EeLg 142 (156)
+..|..++++ ....|++|||..|..|.
T Consensus 286 ~~s~~e~~~~Wv~~~~~~~L~~lGL~~P~~~~ 317 (491)
T 2inc_A 286 NQSFKEFMLEWIVAQFERQLLDLGLDKPWYWD 317 (491)
T ss_dssp CSCHHHHHHHHTHHHHHHHHHHHTCCCCTTHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCChHHH
Confidence 5678887777 88889999999998764
No 77
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=20.68 E-value=26 Score=24.73 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=13.0
Q ss_pred hhhhhHhhCCCCcccc
Q psy9569 126 ITPTLKELGIETPAQL 141 (156)
Q Consensus 126 lkPtl~ELGI~t~EeL 141 (156)
+.-.|.++||.|+|+|
T Consensus 16 ~e~~L~~vGI~s~e~L 31 (93)
T 3bqs_A 16 LEQDLIKAGIKTPVEL 31 (93)
T ss_dssp HHHHHHHTTCCSHHHH
T ss_pred HHHHHHHcCCCCHHHH
Confidence 4456789999999987
No 78
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.23 E-value=1.3e+02 Score=21.92 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhcC----CCCCCHHHHHHHHHHHHhh--hhHHHHHHHHHHhh
Q psy9569 63 WDIRRGLMNLAHD----DCVPDPEIIIAALKAIRRV--NDYALAIRFLETTE 108 (156)
Q Consensus 63 we~rrglN~l~~~----DlVPeP~Ii~AALrAcRRv--ND~alAVR~lE~iK 108 (156)
=++.|.||-||.+ || +|.|+..-..-|+=+ +||++|-.+-=.|-
T Consensus 39 ~D~~KRL~~LfdkLn~~~L--s~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 39 DDISRRLALLREQWAGGKL--SIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3678888888877 98 788888877777755 59999998875554
No 79
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=20.19 E-value=63 Score=27.34 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.7
Q ss_pred chhHHHHHhhhhhhHhhCCCCcc
Q psy9569 117 KIWPYIVQEITPTLKELGIETPA 139 (156)
Q Consensus 117 ~iY~~~lqElkPtl~ELGI~t~E 139 (156)
+.-+..++.+.|+|+++|+..|+
T Consensus 222 eLR~~w~~~v~~~l~~~gL~~P~ 244 (311)
T 3pvt_A 222 ELRQRFVDNTVPQVEMLGMTVPD 244 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC
Confidence 56788999999999999999986
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=20.09 E-value=2.2e+02 Score=19.61 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q psy9569 81 PEIIIAALKAIRRVNDYALAIRFLETTEFK 110 (156)
Q Consensus 81 P~Ii~AALrAcRRvND~alAVR~lE~iK~K 110 (156)
+.+...--..+.+.+|+..|+.+++.+...
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444444455555555555555554443
Done!