RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9569
(156 letters)
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos
taurus) [TaxId: 9913]}
Length = 105
Score = 165 bits (419), Expect = 1e-54
Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Query: 41 EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALA 100
E+DEEF R+V +FN+PDID W++R+G+ L D VP+P+II AAL+A RR+ND+A A
Sbjct: 1 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASA 60
Query: 101 IRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
+R LE + K G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 61 VRILEVVKDKAGP-HKEIYPYVIQELRPTLNELGISTPEELGLDK 104
>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus
subtilis [TaxId: 1423]}
Length = 139
Score = 28.4 bits (62), Expect = 0.21
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 42 ESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
E E +++++A+ + D+ W L ++ V
Sbjct: 5 EKACETLRKFMAYMLEKDMKSW------TELWDENAV 35
>d2cvla1 d.79.1.1 (A:1-124) Putative translation intiation
inhibitor TTHA0137 {Thermus thermophilus [TaxId: 274]}
Length = 124
Score = 27.5 bits (60), Expect = 0.41
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 31 APIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDI 65
A I ++ AV+ FV + + DI
Sbjct: 11 AAIGPYAQAVKAGGFVFVSGQIPLAPDGSLVEGDI 45
>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092
{Burkholderia xenovorans [TaxId: 36873]}
Length = 127
Score = 26.4 bits (57), Expect = 0.99
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 41 EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
EE E + + D D ++ DD +
Sbjct: 3 EEKIREALNAHWQASAAGDFDAE------HDIYDDDAI 34
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid
delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Length = 125
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 45 EEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV---PDPEIIIAALKAIRRVNDYALA 100
+ + RY+ + DI+ + + DD P + I + I L
Sbjct: 8 QGLMARYIELVDVGDIEAI------VQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 60
>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 123
Score = 26.3 bits (57), Expect = 1.1
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 45 EEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
E V++ + +N DID + M DDC
Sbjct: 6 ELPVQKQLEAYNARDIDAF------MAWWADDCQ 33
>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 145
Score = 26.0 bits (56), Expect = 1.8
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 31 APIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWD 64
A S + A DE+ V ++ D
Sbjct: 7 ASKDSAAGAASTPDEKIVLEFMDALTSNDAAKLI 40
>d1tuha_ d.17.4.11 (A:) Hypothetical protein egc068 from a
soil-derived mobile gene cassette {uncultured organism
[TaxId: 155900]}
Length = 131
Score = 25.2 bits (54), Expect = 2.7
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 42 ESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
E + E V+R A FN D+ L ++
Sbjct: 4 EQNAETVRRGYAAFNSGDMKTL------TELFDENAS 34
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051
{Burkholderia thailandensis [TaxId: 57975]}
Length = 130
Score = 25.4 bits (54), Expect = 2.8
Identities = 4/37 (10%), Positives = 9/37 (24%), Gaps = 6/37 (16%)
Query: 42 ESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
+ + V + A ++ D M
Sbjct: 2 RTPYQIVADHYAASDRHDPAAM------MADIAPAIE 32
>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 135
Score = 24.9 bits (53), Expect = 4.0
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 6/38 (15%)
Query: 41 EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCV 78
E S F + N + + D+
Sbjct: 3 EHSLWRFSRALHRALNDRQTEEL------ATIIDDNID 34
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 356
Score = 25.1 bits (54), Expect = 4.1
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 35 SFSHAV--EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
++ +AV S +F + V DG +I A D I L +
Sbjct: 107 NYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIRTLLNQQ 166
Query: 93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIET 137
+ D A+ + T G + + +I L + + T
Sbjct: 167 TITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMT 211
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
circulans [TaxId: 1397]}
Length = 347
Score = 24.8 bits (53), Expect = 5.1
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 7/102 (6%)
Query: 36 FSHAV--EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVP----DPEIIIAALK 89
FS + E F V F + + DG D+ D D + L
Sbjct: 138 FSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLS 197
Query: 90 AIRRV-NDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTL 130
IR + +G S + +I +
Sbjct: 198 KIREKLDAAGAVDGKKYLLTIASGASATYAANTELAKIAAIV 239
>d1qd9a_ d.79.1.1 (A:) Purine regulatory protein YabJ {Bacillus
subtilis [TaxId: 1423]}
Length = 124
Score = 24.3 bits (52), Expect = 5.5
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 31 APIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKA 90
A I +S + ++ + + ++ DI + + A L+
Sbjct: 11 AAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDI--------KEQTHQVFSNLKAVLEE 62
>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW
{Escherichia coli [TaxId: 562]}
Length = 474
Score = 24.8 bits (53), Expect = 5.6
Identities = 8/72 (11%), Positives = 27/72 (37%)
Query: 38 HAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDY 97
AVEE+ + + + +G+ L+ A D + + + ++ ++
Sbjct: 333 KAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNE 392
Query: 98 ALAIRFLETTEF 109
+ + +++
Sbjct: 393 EQVVNWANDSQY 404
>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 298
Score = 24.6 bits (53), Expect = 5.8
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 64 DIRRGLMNLAHDDCVPDPEIIIAALKAIRR 93
+I L ++ + V EI A KAI R
Sbjct: 266 NIYESLKDMKYKVEV-PEEIARKARKAIER 294
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 24.8 bits (53), Expect = 6.1
Identities = 13/70 (18%), Positives = 21/70 (30%)
Query: 40 VEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYAL 99
VE + + + +G I L + D E + I RV
Sbjct: 333 VEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEE 392
Query: 100 AIRFLETTEF 109
AI +E+
Sbjct: 393 AIEISNKSEY 402
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 24.6 bits (53), Expect = 6.5
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 3 RALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDG 62
R L R A S+S+ + +T V+ + V+ +E ++ Y A F++ +
Sbjct: 15 RQLLMRPAISASESITRT-VNDIL-----------DNVKARGDEALREYSAKFDKTTVTA 62
Query: 63 WDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHD 116
+ + A + E+ A A++ + + A + G
Sbjct: 63 LKVSAEEIAAASERL--SDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRC 114
>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
cochlearium [TaxId: 1494]}
Length = 483
Score = 24.4 bits (53), Expect = 7.4
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 20/49 (40%)
Query: 45 EEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRR 93
E+ VK + + N+ D IAAL+ +
Sbjct: 242 EQGVKNITVGYGE-----------CGNMIQD---------IAALRCLEE 270
>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein,
C-terminal domain {Cyanobacteria (Arthrospira maxima)
[TaxId: 129910]}
Length = 142
Score = 23.7 bits (51), Expect = 9.3
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 39 AVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPE 82
+E V +Y+ N D D ++L +D P
Sbjct: 16 QIEGVTNSTVLQYMDNLNANDFDNL------ISLFAEDGALQPP 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.397
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,043
Number of extensions: 29341
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 29
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.3 bits)