Query psy9570
Match_columns 218
No_of_seqs 157 out of 602
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:00:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4061|consensus 100.0 3.2E-68 6.9E-73 445.9 15.7 180 13-192 34-214 (217)
2 PF03232 COQ7: Ubiquinone bios 100.0 1.3E-65 2.8E-70 430.6 19.7 169 26-194 1-171 (172)
3 COG2941 CAT5 Ubiquinone biosyn 100.0 6.5E-64 1.4E-68 421.9 20.4 185 4-218 16-202 (204)
4 cd01042 DMQH Demethoxyubiquino 100.0 9.4E-64 2E-68 416.9 18.9 163 28-193 1-164 (165)
5 cd00657 Ferritin_like Ferritin 99.1 7.8E-09 1.7E-13 76.2 13.3 128 30-165 1-128 (130)
6 KOG4061|consensus 99.0 3.6E-10 7.7E-15 96.0 5.8 106 108-218 37-215 (217)
7 PF03232 COQ7: Ubiquinone bios 98.9 2.2E-08 4.7E-13 84.6 10.3 95 120-218 13-170 (172)
8 cd01045 Ferritin_like_AB Uncha 98.7 8.5E-07 1.8E-11 68.3 14.4 125 31-162 2-134 (139)
9 cd01042 DMQH Demethoxyubiquino 98.7 2.2E-07 4.8E-12 78.0 10.3 89 125-218 16-164 (165)
10 cd07908 Mn_catalase_like Manga 98.5 1.3E-06 2.9E-11 70.9 11.4 134 23-162 9-149 (154)
11 cd01044 Ferritin_CCC1_N Ferrit 98.5 2.5E-06 5.4E-11 67.4 12.5 117 31-162 2-118 (125)
12 cd01052 DPSL DPS-like protein, 98.4 1E-05 2.2E-10 64.6 14.2 136 25-163 4-144 (148)
13 COG1633 Uncharacterized conser 98.4 1.1E-05 2.4E-10 68.3 14.0 135 24-163 21-162 (176)
14 PF02915 Rubrerythrin: Rubrery 98.1 4.3E-05 9.3E-10 58.8 10.6 127 31-162 2-132 (137)
15 PRK10635 bacterioferritin; Pro 98.0 0.00011 2.3E-09 61.2 12.0 119 31-163 10-134 (158)
16 cd01051 Mn_catalase Manganese 98.0 9.3E-05 2E-09 61.4 11.4 127 24-162 17-147 (156)
17 cd00907 Bacterioferritin Bacte 97.9 0.00064 1.4E-08 54.5 13.8 124 27-162 5-132 (153)
18 PRK13456 DNA protection protei 97.7 0.0013 2.7E-08 56.5 13.0 135 24-165 17-160 (186)
19 TIGR00754 bfr bacterioferritin 97.7 0.0018 3.9E-08 52.8 13.2 127 25-163 4-134 (157)
20 PF00210 Ferritin: Ferritin-li 97.4 0.0088 1.9E-07 46.1 14.0 119 37-162 9-131 (142)
21 PRK13456 DNA protection protei 97.1 0.0017 3.7E-08 55.7 7.1 61 25-88 105-167 (186)
22 PF13668 Ferritin_2: Ferritin- 97.1 0.013 2.7E-07 46.5 11.8 118 31-162 5-130 (137)
23 cd01041 Rubrerythrin Rubreryth 97.0 0.017 3.6E-07 45.9 11.5 118 30-162 4-125 (134)
24 cd01055 Nonheme_Ferritin nonhe 97.0 0.033 7.1E-07 44.9 13.3 119 28-162 4-131 (156)
25 cd01053 AOX Alternative oxidas 96.8 0.0078 1.7E-07 50.9 8.4 97 62-163 45-161 (168)
26 TIGR02284 conserved hypothetic 96.8 0.11 2.3E-06 42.2 14.7 125 27-162 4-134 (139)
27 PLN02478 alternative oxidase 96.7 0.017 3.6E-07 53.1 10.0 97 60-162 188-304 (328)
28 PF01786 AOX: Alternative oxid 96.5 0.031 6.7E-07 48.7 10.1 96 62-162 85-201 (207)
29 PRK10635 bacterioferritin; Pro 96.3 0.0092 2E-07 49.6 5.5 57 26-82 81-140 (158)
30 cd01048 Ferritin_like_AB2 Unch 96.2 0.29 6.3E-06 39.3 13.9 115 39-165 12-133 (135)
31 cd07908 Mn_catalase_like Manga 96.1 0.012 2.5E-07 47.8 5.1 53 28-80 102-154 (154)
32 cd01051 Mn_catalase Manganese 96.0 0.021 4.7E-07 47.3 6.5 57 27-83 99-155 (156)
33 PF05974 DUF892: Domain of unk 95.9 0.79 1.7E-05 37.8 16.0 136 25-162 3-145 (159)
34 PRK12775 putative trifunctiona 95.8 0.14 3.1E-06 53.6 13.0 131 26-162 859-990 (1006)
35 cd01046 Rubrerythrin_like rubr 95.4 0.44 9.6E-06 37.5 11.7 107 30-162 4-114 (123)
36 PF10118 Metal_hydrol: Predict 95.3 0.53 1.2E-05 41.9 13.2 123 37-165 38-168 (253)
37 cd01052 DPSL DPS-like protein, 95.1 0.056 1.2E-06 42.9 5.6 54 27-80 93-148 (148)
38 cd01056 Euk_Ferritin eukaryoti 94.6 1 2.3E-05 36.8 12.2 115 37-164 13-137 (161)
39 PRK10304 ferritin; Provisional 94.5 1.1 2.3E-05 37.5 12.1 112 38-163 16-137 (165)
40 cd01045 Ferritin_like_AB Uncha 94.2 0.15 3.2E-06 38.9 5.9 55 25-79 84-138 (139)
41 cd01043 DPS DPS protein, ferri 93.4 1.1 2.4E-05 35.4 9.8 125 32-160 3-132 (139)
42 COG2406 Protein distantly rela 93.3 0.25 5.5E-06 41.4 6.0 62 22-83 99-162 (172)
43 PF09537 DUF2383: Domain of un 92.9 0.21 4.6E-06 38.1 4.8 102 27-132 5-109 (111)
44 PF13668 Ferritin_2: Ferritin- 91.9 0.42 9.1E-06 37.7 5.5 55 28-82 83-137 (137)
45 PF02915 Rubrerythrin: Rubrery 91.8 0.56 1.2E-05 35.7 6.0 54 26-79 83-136 (137)
46 cd00657 Ferritin_like Ferritin 91.3 0.65 1.4E-05 33.5 5.6 51 29-79 79-129 (130)
47 cd00904 Ferritin Ferritin iron 90.7 6 0.00013 32.4 11.5 110 37-159 13-132 (160)
48 PF11583 AurF: P-aminobenzoate 90.3 5.3 0.00011 35.7 11.6 138 20-165 66-222 (304)
49 TIGR00754 bfr bacterioferritin 88.9 1.2 2.5E-05 36.2 5.8 56 27-82 82-140 (157)
50 cd01041 Rubrerythrin Rubreryth 88.4 1.2 2.6E-05 35.2 5.4 58 26-83 72-133 (134)
51 COG3461 Uncharacterized conser 87.5 1.3 2.8E-05 34.3 4.7 58 32-96 22-79 (103)
52 cd00907 Bacterioferritin Bacte 86.9 2.1 4.5E-05 34.0 6.0 57 27-83 81-140 (153)
53 cd01044 Ferritin_CCC1_N Ferrit 86.1 2.3 5E-05 33.3 5.8 46 30-81 79-124 (125)
54 PF04305 DUF455: Protein of un 86.0 10 0.00022 34.0 10.5 118 39-164 78-202 (253)
55 cd01046 Rubrerythrin_like rubr 85.2 2.4 5.1E-05 33.4 5.5 58 26-83 62-122 (123)
56 COG2406 Protein distantly rela 81.4 32 0.00069 29.1 12.4 135 25-166 15-158 (172)
57 COG3546 Mn-containing catalase 80.0 13 0.00029 33.9 8.7 126 35-161 31-180 (277)
58 COG3687 Predicted metal-depend 78.0 41 0.00088 30.7 11.1 120 37-166 50-181 (280)
59 CHL00185 ycf59 magnesium-proto 77.7 28 0.0006 32.8 10.3 133 12-162 64-210 (351)
60 TIGR02029 AcsF magnesium-proto 77.7 32 0.00069 32.2 10.6 141 12-170 58-213 (337)
61 cd01047 ACSF Aerobic Cyclase S 77.2 26 0.00057 32.6 9.9 133 12-162 48-194 (323)
62 PRK13654 magnesium-protoporphy 77.0 23 0.0005 33.4 9.5 140 13-170 69-223 (355)
63 PRK09448 DNA starvation/statio 76.7 42 0.00091 27.8 13.3 77 13-89 8-87 (162)
64 COG1592 Rubrerythrin [Energy p 74.5 48 0.001 28.1 10.1 57 28-84 5-64 (166)
65 COG2193 Bfr Bacterioferritin ( 73.8 53 0.0012 27.6 12.4 121 28-162 7-133 (157)
66 PLN02508 magnesium-protoporphy 73.5 18 0.00039 34.0 7.9 132 13-162 65-210 (357)
67 PF05067 Mn_catalase: Manganes 73.3 33 0.00071 31.5 9.5 127 35-162 31-186 (283)
68 PF00210 Ferritin: Ferritin-li 73.1 9.6 0.00021 28.9 5.3 57 27-83 80-139 (142)
69 PF05067 Mn_catalase: Manganes 72.5 3.9 8.5E-05 37.4 3.4 84 5-90 118-201 (283)
70 COG2193 Bfr Bacterioferritin ( 71.3 12 0.00026 31.5 5.7 58 25-82 80-140 (157)
71 PF12960 DUF3849: Protein of u 71.0 4.9 0.00011 32.9 3.3 41 110-157 23-63 (133)
72 COG2976 Uncharacterized protei 70.9 39 0.00085 29.7 9.0 79 66-156 4-82 (207)
73 PF14518 Haem_oxygenas_2: Iron 70.7 22 0.00047 26.5 6.7 70 69-138 15-91 (106)
74 cd01055 Nonheme_Ferritin nonhe 69.8 18 0.00039 28.8 6.4 57 27-83 80-139 (156)
75 PRK12775 putative trifunctiona 69.3 13 0.00028 39.3 6.8 61 29-89 943-1005(1006)
76 COG1633 Uncharacterized conser 68.7 17 0.00037 30.7 6.2 57 23-83 113-169 (176)
77 COG2941 CAT5 Ubiquinone biosyn 63.2 6.2 0.00014 34.3 2.5 40 39-78 135-176 (204)
78 PF11553 DUF3231: Protein of u 62.4 84 0.0018 25.6 12.5 119 40-167 30-148 (166)
79 PF13794 MiaE_2: tRNA-(MS[2]IO 59.8 41 0.00089 29.0 6.9 71 25-95 4-75 (185)
80 cd07909 YciF YciF bacterial st 58.9 1E+02 0.0022 25.4 15.3 128 29-158 5-138 (147)
81 COG3105 Uncharacterized protei 56.0 57 0.0012 26.8 6.8 67 96-163 16-85 (138)
82 PRK15022 ferritin-like protein 54.1 41 0.0009 28.3 6.0 53 38-90 16-71 (167)
83 PF10624 TraS: Plasmid conjuga 52.9 8.4 0.00018 32.0 1.6 45 88-132 74-118 (164)
84 PF12902 Ferritin-like: Ferrit 50.4 65 0.0014 28.3 6.9 56 39-94 8-66 (227)
85 cd01043 DPS DPS protein, ferri 49.0 46 0.001 26.0 5.3 54 26-79 82-138 (139)
86 cd01048 Ferritin_like_AB2 Unch 45.7 47 0.001 26.5 4.8 54 26-79 81-134 (135)
87 cd01057 AAMH_A Aromatic and Al 44.2 3.2E+02 0.0069 26.7 11.8 120 38-165 89-225 (465)
88 PF07875 Coat_F: Coat F domain 44.1 92 0.002 21.4 5.6 48 38-85 12-59 (64)
89 COG3546 Mn-containing catalase 43.7 18 0.00038 33.0 2.3 56 29-84 135-190 (277)
90 PF02084 Bindin: Bindin; Inte 40.8 57 0.0012 29.2 4.9 38 124-163 133-171 (238)
91 PF05461 ApoL: Apolipoprotein 37.5 71 0.0015 29.5 5.3 41 94-139 130-170 (313)
92 PF09435 DUF2015: Fungal prote 37.2 68 0.0015 26.2 4.5 52 2-53 63-115 (128)
93 cd07910 MiaE MiaE tRNA-modifyi 35.1 82 0.0018 27.1 4.9 45 56-100 48-92 (180)
94 cd07911 RNRR2_Rv0233_like Ribo 33.4 3.4E+02 0.0074 24.0 16.2 143 19-164 38-198 (280)
95 COG1528 Ftn Ferritin-like prot 29.6 2E+02 0.0043 24.5 6.3 80 39-130 17-103 (167)
96 PF11239 DUF3040: Protein of u 29.2 2.3E+02 0.0049 20.6 6.2 34 76-109 25-59 (82)
97 PF05163 DinB: DinB family; I 29.1 80 0.0017 24.7 3.7 38 57-94 121-158 (168)
98 TIGR02284 conserved hypothetic 29.0 1.1E+02 0.0025 24.5 4.6 44 36-79 94-138 (139)
99 PRK10304 ferritin; Provisional 28.4 2.3E+02 0.0049 23.5 6.5 59 26-84 81-145 (165)
100 PF12732 YtxH: YtxH-like prote 27.1 2.3E+02 0.005 20.0 5.9 14 95-108 5-18 (74)
101 PRK07209 ribonucleotide-diphos 26.2 5.4E+02 0.012 24.0 15.2 143 19-164 90-256 (369)
102 cd01056 Euk_Ferritin eukaryoti 26.2 2.1E+02 0.0045 23.1 5.8 59 26-84 82-144 (161)
103 PF12597 DUF3767: Protein of u 25.9 2.6E+02 0.0055 22.2 6.0 38 87-124 38-77 (118)
104 PF00268 Ribonuc_red_sm: Ribon 23.7 3.1E+02 0.0067 24.2 6.8 141 20-164 48-202 (281)
105 PF10097 DUF2335: Predicted me 23.5 85 0.0018 21.3 2.5 32 55-86 13-44 (50)
106 cd01050 Acyl_ACP_Desat Acyl AC 23.4 2E+02 0.0042 26.5 5.6 44 39-82 159-204 (297)
107 PF06522 B12D: NADH-ubiquinone 22.0 52 0.0011 23.8 1.3 24 89-112 5-28 (73)
108 PF13608 Potyvirid-P3: Protein 21.8 3.5E+02 0.0075 26.2 7.2 84 119-205 286-375 (445)
109 cd01058 AAMH_B Aromatic and Al 21.8 6.1E+02 0.013 23.1 15.2 107 56-165 129-249 (304)
110 PF12713 DUF3806: Domain of un 21.4 1.4E+02 0.0031 22.1 3.6 35 73-108 3-38 (87)
111 cd04778 HTH_MerR-like_sg2 Heli 21.3 2.9E+02 0.0062 24.1 6.0 44 112-155 163-206 (219)
112 PF02830 V4R: V4R domain; Int 21.0 68 0.0015 22.0 1.7 19 94-112 23-41 (62)
113 PRK11677 hypothetical protein; 20.8 3.8E+02 0.0082 21.9 6.2 68 92-162 3-79 (134)
114 COG3685 Uncharacterized protei 20.6 3.1E+02 0.0068 23.4 5.8 64 27-90 9-72 (167)
115 COG1103 Archaea-specific pyrid 20.3 1.3E+02 0.0028 28.2 3.7 35 53-88 269-309 (382)
No 1
>KOG4061|consensus
Probab=100.00 E-value=3.2e-68 Score=445.89 Aligned_cols=180 Identities=61% Similarity=0.919 Sum_probs=162.2
Q ss_pred cccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh
Q psy9570 13 FRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLP 92 (218)
Q Consensus 13 ~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~P 92 (218)
+.+....|++.++..+++++|||||||+||++||.||++|+.+.+++|.|++|||||++|+..|++++.++|||||+|.|
T Consensus 34 ~~s~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P 113 (217)
T KOG4061|consen 34 VISRGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGTSVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVLTP 113 (217)
T ss_pred eecCCcccCchhHHHHHHhheeccccccccchhhhchhhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCchhhhh
Confidence 34445569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCc-ccHHHHHHHHHHHHHHHhHHHhhHhcCCCcC
Q psy9570 93 FWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPA-ANRELMDVIHKFRDEEQEHHDTGLEHGAEQA 171 (218)
Q Consensus 93 lW~~~gf~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~-~~~~l~~~i~~~rddE~eH~d~A~~~ga~~a 171 (218)
+|+++||+||++|||+|++++||||+|||++|..|||+||++|.+.|| +.++|+.+|.+|||||+||+|+|++|+++++
T Consensus 114 ~w~vagfalGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~~fRDeEleHhdtgv~hda~~A 193 (217)
T KOG4061|consen 114 LWNVAGFALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTITKFRDEELEHHDTGVEHDAEKA 193 (217)
T ss_pred HHHHHHHHhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHHHHhHHHHHhhccccccCcccC
Confidence 999999999999999999999999999999999999999999999887 7899999999999999999999988877765
Q ss_pred chHHHHHHHHHHHHHHHHHhc
Q psy9570 172 PFYKLMTDVIKVGCKVAIEHG 192 (218)
Q Consensus 172 p~~~~l~~~ik~~t~~AI~~~ 192 (218)
|+|.+|+++||.||++|||.+
T Consensus 194 pay~~lt~~Iq~gCk~AI~~~ 214 (217)
T KOG4061|consen 194 PAYAALTEIIQTGCKVAIWIA 214 (217)
T ss_pred cHHHHHHHHHHHHhHHHHHHh
Confidence 555555555544444444444
No 2
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=100.00 E-value=1.3e-65 Score=430.57 Aligned_cols=169 Identities=53% Similarity=0.844 Sum_probs=160.4
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLG-NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAG 104 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~-~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ 104 (218)
++++++||||||||+|||+||+||+++++ ++.++++|++|+++|++||+||+++|+++|+|||+|+|+|+++||+||++
T Consensus 1 ~~i~r~lRVdHAGE~~A~~iY~gQ~~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~ 80 (172)
T PF03232_consen 1 QLIARILRVDHAGEVGAVRIYRGQLAVARRDPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGAL 80 (172)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHhHHHhhHhcCCCcCchHHHHHHHHHH
Q psy9570 105 SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDP-AANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKV 183 (218)
Q Consensus 105 tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d-~~~~~l~~~i~~~rddE~eH~d~A~~~ga~~ap~~~~l~~~ik~ 183 (218)
||++|++++|+||+|||++|++|||+||++|++.+ +.+++++++|++|||||.+|+|+|+++|++++|+|++|+++|++
T Consensus 81 tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~d~A~~~~a~~~p~~~~l~~~i~~ 160 (172)
T PF03232_consen 81 TALLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHRDTAIEAGAEKAPAYRLLSAVIKA 160 (172)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999643 25688999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q psy9570 184 GCKVAIEHGAE 194 (218)
Q Consensus 184 ~t~~AI~~~ae 194 (218)
||++|||++++
T Consensus 161 ~~~~ai~~a~r 171 (172)
T PF03232_consen 161 GCKAAIWLAKR 171 (172)
T ss_pred HHHHHHHHHhc
Confidence 99988888764
No 3
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=100.00 E-value=6.5e-64 Score=421.87 Aligned_cols=185 Identities=42% Similarity=0.579 Sum_probs=165.0
Q ss_pred Ccccccccccccccc--cCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9570 4 STFRVNQQGFRLVRN--LHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIR 81 (218)
Q Consensus 4 ~~~~~~~~~~~~~~~--~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~ 81 (218)
++|..+|..-+.+.+ +||+.+++.++++||||||||+|||+||+||.++++.+..+..|+|||+||++||+||++++.
T Consensus 16 ~~~~~~~~~~~~a~~rpdlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~~~R~~l~em~d~E~~HL~~f~~~l~ 95 (204)
T COG2941 16 SPFSGSPTRPRPAMPRPDLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSPEPRIQLKEMADEEIDHLAWFEQRLL 95 (204)
T ss_pred CCcCCCCCCCCCCCCCCCcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456544444333332 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHH
Q psy9570 82 KYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHD 161 (218)
Q Consensus 82 ~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d 161 (218)
++++|||+|+|+||.+||+||++||++|+|++|+||++||+||+.||++||++|+..| .++++.|.||||||++|.|
T Consensus 96 e~~vRPsll~P~W~~~~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L~~~d---~~lr~~l~qfR~DE~eH~d 172 (204)
T COG2941 96 ELGVRPSLLNPLWYAAAFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLRELPNLD---AELRAILAQFRDDELEHLD 172 (204)
T ss_pred HccCCccHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 6788889999999999999
Q ss_pred hhHhcCCCcCchHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHhHHHHHhcC
Q psy9570 162 TGLEHGAEQAPFYKLMTDVIKVGCKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK 218 (218)
Q Consensus 162 ~A~~~ga~~ap~~~~l~~~ik~~t~~AI~~~ae~a~~y~~l~~~Ik~gcr~AI~~s~ 218 (218)
+|+..| .+++|.+++++||.+||++||+||
T Consensus 173 ~Ai~a~---------------------------~a~~~~~i~~~m~~~cRi~i~~a~ 202 (204)
T COG2941 173 NAIAAG---------------------------EAIFPAPITKAMKLICRIMIKSAY 202 (204)
T ss_pred HHHHhC---------------------------CCCccchHHHHHHHHHHHHHHHHh
Confidence 988732 456777777777777777777765
No 4
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=100.00 E-value=9.4e-64 Score=416.87 Aligned_cols=163 Identities=56% Similarity=0.891 Sum_probs=153.1
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhh
Q psy9570 28 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL 107 (218)
Q Consensus 28 i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal 107 (218)
++++||||||||+|||+||+||+++++++.++++|++|+++|++||+||+++|+++|+|||+|+|+|+++||+||++||+
T Consensus 1 ~~~~~RVnHAGE~gA~~IY~gQ~~~~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal 80 (165)
T cd01042 1 LARILRVNHAGEVGAVRIYRGQLAVARDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTAL 80 (165)
T ss_pred CcchhhccccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhhCC-CcccHHHHHHHHHHHHHHHhHHHhhHhcCCCcCchHHHHHHHHHHHHH
Q psy9570 108 LGPKGAMACTVAVESVIVDHYNEQLRALMSD-PAANRELMDVIHKFRDEEQEHHDTGLEHGAEQAPFYKLMTDVIKVGCK 186 (218)
Q Consensus 108 ~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~-d~~~~~l~~~i~~~rddE~eH~d~A~~~ga~~ap~~~~l~~~ik~~t~ 186 (218)
+|++++|+||++||++|++||++||++|+.. | ++++++|++||+||.+|+|+|+++|++++|+|++++++|+.||+
T Consensus 81 ~G~~~a~~~~~avE~~V~~Hy~~ql~~L~~~~d---~~l~~~l~~~r~DE~~H~d~A~~~ga~~a~~~~~~~~~i~~~~~ 157 (165)
T cd01042 81 LGKKAAMACTAAVETVVEEHYNDQLRELPAQPD---KELRAIIEQFRDDELEHADIAEELGAEKAPLYALLKALIKAGCK 157 (165)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCcCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 4 77888899999999999999999999987777777777777777
Q ss_pred HHHHhcc
Q psy9570 187 VAIEHGA 193 (218)
Q Consensus 187 ~AI~~~a 193 (218)
++||.+.
T Consensus 158 ~~i~~a~ 164 (165)
T cd01042 158 VAIWLAK 164 (165)
T ss_pred HHHHHHc
Confidence 7777654
No 5
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.05 E-value=7.8e-09 Score=76.23 Aligned_cols=128 Identities=19% Similarity=0.201 Sum_probs=106.6
Q ss_pred HHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhcC
Q psy9570 30 EIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLG 109 (218)
Q Consensus 30 r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G 109 (218)
++|+....+|..|..+|.-+...++++.++..+..+..+|.+|...|.+++..++..|+...+. .....+......+
T Consensus 1 ~~L~~~~~~E~~a~~~y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 77 (130)
T cd00657 1 RLLNDALAGEYAAIIAYGQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH---LLAAYALPKTSDD 77 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH---HHHhcccCCCccC
Confidence 4677788899999999999999999889999999999999999999999999999999876655 2233344455666
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhHh
Q psy9570 110 PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 165 (218)
Q Consensus 110 ~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~ 165 (218)
...++......|..-.+.|...++.+. | .++++.+..+..||.+|.+...+
T Consensus 78 ~~~~l~~~~~~E~~~~~~y~~~~~~~~--d---~~~~~~~~~~~~~E~~H~~~~~~ 128 (130)
T cd00657 78 PAEALRAALEVEARAIAAYRELIEQAD--D---PELRRLLERILADEQRHAAWFRK 128 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--C---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888999999999999997764 3 55677799999999999986543
No 6
>KOG4061|consensus
Probab=99.03 E-value=3.6e-10 Score=95.98 Aligned_cols=106 Identities=29% Similarity=0.470 Sum_probs=75.3
Q ss_pred cCchhhhHHHHHHHHHH----------HHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhh----HhcCCCc---
Q psy9570 108 LGPKGAMACTVAVESVI----------VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQ--- 170 (218)
Q Consensus 108 ~G~~~~~a~t~aVE~~V----------~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A----~~~ga~~--- 170 (218)
.|.+.+-.--+.+++.| +.=|..|+.-|... .+..+|++|=|+|.+|+++= +.+.-.+
T Consensus 37 ~g~~l~~~~~a~~d~iIRVDhAGElGAdrIYaGQ~avL~~~-----~vgpvi~hmWdqEk~Hl~tf~~l~~k~rVrpT~l 111 (217)
T KOG4061|consen 37 RGTHLSASRQALLDRIIRVDHAGELGADRIYAGQMAVLQGT-----SVGPVIKHMWDQEKEHLKTFENLALKHRVRPTVL 111 (217)
T ss_pred CCcccCchhHHHHHHhheeccccccccchhhhchhhhhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHccCCchhh
Confidence 45555555566677776 45688888777543 26677999999999999763 4444444
Q ss_pred CchHHHHHHHHHH--------------------------------------------------------HHHHHHHhccc
Q psy9570 171 APFYKLMTDVIKV--------------------------------------------------------GCKVAIEHGAE 194 (218)
Q Consensus 171 ap~~~~l~~~ik~--------------------------------------------------------~t~~AI~~~ae 194 (218)
.|+..+...+..+ -.+++|.++++
T Consensus 112 ~P~w~vagfalGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~pe~~kell~~i~~fRDeEleHhdtgv~hda~ 191 (217)
T KOG4061|consen 112 TPLWNVAGFALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDDPEEHKELLSTITKFRDEELEHHDTGVEHDAE 191 (217)
T ss_pred hhHHHHHHHHhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhCcHhHHHHHHHHHHHhHHHHHhhccccccCcc
Confidence 2322222212111 26789999999
Q ss_pred CCcchHHHHHHHHHHhHHHHHhcC
Q psy9570 195 QAPFYKLMTDVIKVGCKVAIGVAK 218 (218)
Q Consensus 195 ~a~~y~~l~~~Ik~gcr~AI~~s~ 218 (218)
+||+|.+|+++|++|||+|||+||
T Consensus 192 ~Apay~~lt~~Iq~gCk~AI~~~e 215 (217)
T KOG4061|consen 192 KAPAYAALTEIIQTGCKVAIWIAE 215 (217)
T ss_pred cCcHHHHHHHHHHHHhHHHHHHhh
Confidence 999999999999999999999997
No 7
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=98.85 E-value=2.2e-08 Score=84.55 Aligned_cols=95 Identities=34% Similarity=0.383 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh----hHhcCCCcCchHHHHHH---HHHHH--------
Q psy9570 120 VESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT----GLEHGAEQAPFYKLMTD---VIKVG-------- 184 (218)
Q Consensus 120 VE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~----A~~~ga~~ap~~~~l~~---~ik~~-------- 184 (218)
=|.--..=|..|+.-+.. + +.++..|++|.++|.+|... ..+++..+..+.++|.. +.+.+
T Consensus 13 GE~~A~~iY~gQ~~~~~~-~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~tal~G~~~ 88 (172)
T PF03232_consen 13 GEVGAVRIYRGQLAVARR-D---PELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGALTALLGDKA 88 (172)
T ss_pred HHHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHHHHhhchHH
Confidence 344445569999987753 3 66777799999999999854 35577788665555542 22221
Q ss_pred ------------------------------------------------HHHHHHhcccCCcchHHHHHHHHHHhHHHHHh
Q psy9570 185 ------------------------------------------------CKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGV 216 (218)
Q Consensus 185 ------------------------------------------------t~~AI~~~ae~a~~y~~l~~~Ik~gcr~AI~~ 216 (218)
-++|+.++++++|+|++|+++||.|||+|||+
T Consensus 89 ~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~d~A~~~~a~~~p~~~~l~~~i~~~~~~ai~~ 168 (172)
T PF03232_consen 89 AMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHRDTAIEAGAEKAPAYRLLSAVIKAGCKAAIWL 168 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999
Q ss_pred cC
Q psy9570 217 AK 218 (218)
Q Consensus 217 s~ 218 (218)
||
T Consensus 169 a~ 170 (172)
T PF03232_consen 169 AK 170 (172)
T ss_pred Hh
Confidence 96
No 8
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.71 E-value=8.5e-07 Score=68.27 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=100.1
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcchhhHHHHHHHHH------
Q psy9570 31 IIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR--VRPTALLPFWNVAGFILG------ 102 (218)
Q Consensus 31 ~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~--~RpS~L~PlW~~~gf~LG------ 102 (218)
+|...-.+|..+...|.-++...+++.++..++.+..+|..|..++.+++.+++ .-|+. +.+...+..++
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPEL--EPEDYKEEVEEEPEFKK 79 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc--cHHHHHHHHhhhhhHHH
Confidence 466677899999999999999999999999999999999999999999999986 23333 22333333333
Q ss_pred HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 103 AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 103 a~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
......+..-++-.-...|+...+.|+.-+.... | +++++++.++.+||.+|.+.
T Consensus 80 ~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~--d---~~~~~~~~~l~~~E~~H~~~ 134 (139)
T cd01045 80 ALESLMDPLEALRLAIEIEKDAIEFYEELAEKAE--D---PEVKKLFEELAEEERGHLRL 134 (139)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999999997653 2 56777799999999999865
No 9
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=98.66 E-value=2.2e-07 Score=78.01 Aligned_cols=89 Identities=35% Similarity=0.451 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhh----HhcCCCcCchHHHHHH---HHHHH-------------
Q psy9570 125 VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG----LEHGAEQAPFYKLMTD---VIKVG------------- 184 (218)
Q Consensus 125 ~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A----~~~ga~~ap~~~~l~~---~ik~~------------- 184 (218)
..=|..|+.-+.. +.++..|++|.++|.+|.+.= .+.|+++..+.++|.. +...+
T Consensus 16 ~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~a~~~~ 90 (165)
T cd01042 16 VRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKAAMACT 90 (165)
T ss_pred HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 4559999977743 677888999999999999654 5578888555555542 22111
Q ss_pred ----------------------------------------HHHHHHhcccCCcchHHHHHHHHHHhHHHHHhcC
Q psy9570 185 ----------------------------------------CKVAIEHGAEQAPFYKLMTDVIKVGCKVAIGVAK 218 (218)
Q Consensus 185 ----------------------------------------t~~AI~~~ae~a~~y~~l~~~Ik~gcr~AI~~s~ 218 (218)
.++|+.+++++||+|++++++|+.|||++||+|+
T Consensus 91 ~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~~~ga~~a~~~~~~~~~i~~~~~~~i~~a~ 164 (165)
T cd01042 91 AAVETVVEEHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAEELGAEKAPLYALLKALIKAGCKVAIWLAK 164 (165)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCcCcchHHHHHHHHHHHHHHHHHHc
Confidence 3678888999999999999999999999999986
No 10
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=98.53 E-value=1.3e-06 Score=70.94 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=101.1
Q ss_pred HhHHHHHHHHhhhch---hHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHH
Q psy9570 23 RVSRQLDEIIRVDHA---GELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVA 97 (218)
Q Consensus 23 ~~~~~i~r~lRVdHA---GE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~ 97 (218)
.++...+++|.-+-+ ||+.|+.-|-=|....+ ++.++..+..+..+|..|..+|.+++.+++..|....+ +...
T Consensus 9 ~~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~-~~~~ 87 (154)
T cd07908 9 GPNPRYAELLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSS-SSDK 87 (154)
T ss_pred CCChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhh-cccc
Confidence 455677888888887 99999999999988876 57889999999999999999999999999998874321 1100
Q ss_pred -HHHHH-HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 98 -GFILG-AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 98 -gf~LG-a~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
.+..+ ......+..-.+-+-...|+.--++|++.+... .| ..+++.++.+..||.+|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~--~d---~~~r~ll~~I~~eE~~H~~~ 149 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI--KD---PYIRALLNRIILDEKLHIKI 149 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHHHHHHHHH
Confidence 00000 011111234477888899999999999999865 33 66677799999999999864
No 11
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.53 E-value=2.5e-06 Score=67.40 Aligned_cols=117 Identities=16% Similarity=0.253 Sum_probs=98.6
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhcCc
Q psy9570 31 IIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGP 110 (218)
Q Consensus 31 ~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~ 110 (218)
.++-+-..|.-+..+|+-.+...+++.++..+..++++|.+|...|.+++.+++..|. .|-+++ +.+..++..+|.
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~--~~~~~~--~~~~~l~~~~g~ 77 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP--RPKLKI--FFYKLLARIFGP 77 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CccHHH--HHHHHHHHHHhH
Confidence 4566778999999999999999999999999999999999999999999999999886 444444 455667778888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 111 KGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 111 ~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
..++-.....|+---.-|.++... +..+.++-.||.+|...
T Consensus 78 ~~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~ 118 (125)
T cd01044 78 TFVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEV 118 (125)
T ss_pred HHHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHH
Confidence 888888888898888889888755 23478899999999864
No 12
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=98.44 E-value=1e-05 Score=64.56 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=103.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh-hHHHHHHH
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLP-FWNVAGFI 100 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~P-lW~~~gf~ 100 (218)
++.+...|-..-+-|+.+...|+.+....+.+ .+...+++...+|.+|...+.+++..+|++|..-.- +...+|..
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~ 83 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCK 83 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhccc
Confidence 55677888889999999999999999988865 577899999999999999999999999999998442 22222211
Q ss_pred HHH-HhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhh
Q psy9570 101 LGA-GSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 101 LGa-~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A 163 (218)
++- .....+.+-.+-.....|+.+.+.|++.++.-.+.| ....+.+..+-.||.+|.+.-
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D---~~t~~ll~~~l~de~~h~~~~ 144 (148)
T cd01052 84 CGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKD---PVTYDLALAILNEEIEHEEDL 144 (148)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHHHHHH
Confidence 111 122334456677778889999999999997644445 444455999999999998753
No 13
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.1e-05 Score=68.29 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=106.5
Q ss_pred hHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcchhhHHHHHHHHH
Q psy9570 24 VSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP-TALLPFWNVAGFILG 102 (218)
Q Consensus 24 ~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~Rp-S~L~PlW~~~gf~LG 102 (218)
.-.-+.++|+..=.+|..|...|.-|+..+.+.+++..+..+.++|.+|+.+|++++.++.-+| +..-+.|..-++.+.
T Consensus 21 ~~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (176)
T COG1633 21 KELSIEELLAIAIRGELEAIKFYEELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILE 100 (176)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhcc
Confidence 3456889999999999999999999999999999999999999999999999999999999888 666788888887777
Q ss_pred HHhh---hcCchh---hhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhh
Q psy9570 103 AGSA---LLGPKG---AMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 103 a~ta---l~G~~~---~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A 163 (218)
.+.= ..|... +.-.....|+.=.+-|...+..+.. .+.+.+++.+-++|..|...-
T Consensus 101 ~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l 162 (176)
T COG1633 101 YLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGL 162 (176)
T ss_pred ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6544 233211 1222233355556788888888754 556667999999999997653
No 14
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.11 E-value=4.3e-05 Score=58.84 Aligned_cols=127 Identities=18% Similarity=0.194 Sum_probs=90.0
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhh-
Q psy9570 31 IIRVDHAGELGADRIYAGQMAVLGN--SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL- 107 (218)
Q Consensus 31 ~lRVdHAGE~gA~~IY~GQ~~v~~~--~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal- 107 (218)
+|+..=.+|..+..+|.-.+..+++ |.++..+..+.++|..|..+|.+++.+.+.......+-..+.++........
T Consensus 2 ~L~~A~~~E~~~~~~Y~~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (137)
T PF02915_consen 2 ILEMAIKMELEAAKFYRELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEET 81 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhh
Confidence 5677778999999999999999987 5599999999999999999999999988532211100000000000000000
Q ss_pred -cCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 108 -LGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 108 -~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
.+...++-.....|+.--.+|....+.++. ++++..+..+..||.+|.+.
T Consensus 82 ~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~l~~~E~~H~~~ 132 (137)
T PF02915_consen 82 DENLEEALEMAIKEEKDAYEFYAELARKAPD-----PEIRKLFEELAKEEKEHEDL 132 (137)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 034555666667788888999999998853 55667799999999999875
No 15
>PRK10635 bacterioferritin; Provisional
Probab=98.03 E-value=0.00011 Score=61.18 Aligned_cols=119 Identities=16% Similarity=0.069 Sum_probs=92.9
Q ss_pred HHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--chhhHHHHHHHHHHHh
Q psy9570 31 IIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA--LLPFWNVAGFILGAGS 105 (218)
Q Consensus 31 ~lRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~--L~PlW~~~gf~LGa~t 105 (218)
.|=-.=+.|+.|+.-|.-+..++++ +.+...+..-..+|.+|-..|-++|..+|+.|++ +.|+ .+
T Consensus 10 ~LN~~L~~El~Ai~QY~~ha~~~~~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~-~~--------- 79 (158)
T PRK10635 10 YLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKL-NI--------- 79 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC-CC---------
Confidence 3333457899999999999999974 3455566666889999999999999999999997 3221 11
Q ss_pred hhcCchhhhHHHHHHHHHHHHHHHHHHHHhh-CCCcccHHHHHHHHHHHHHHHhHHHhh
Q psy9570 106 ALLGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 106 al~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~-~~d~~~~~l~~~i~~~rddE~eH~d~A 163 (218)
+ -.-+-.+-+--..|..+.+.|++-++.-. ..|..++.+ ++.|-+||.+|.|-=
T Consensus 80 g-~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~l---l~~iL~dEe~H~~~l 134 (158)
T PRK10635 80 G-EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDM---MIEILADEEGHIDWL 134 (158)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 1 13356678888999999999999998766 356566666 999999999999763
No 16
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.01 E-value=9.3e-05 Score=61.42 Aligned_cols=127 Identities=15% Similarity=0.128 Sum_probs=97.2
Q ss_pred hHHHHHHHHhhhc---hhHHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHH
Q psy9570 24 VSRQLDEIIRVDH---AGELGADRIYAGQMAVL-GNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGF 99 (218)
Q Consensus 24 ~~~~i~r~lRVdH---AGE~gA~~IY~GQ~~v~-~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf 99 (218)
+++..+++|=-+- -||+.|.-=|--|.++. +++.+++.+.....+|..|+.++.+++..++.-|.- -.|. +++
T Consensus 17 p~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g--~pw~-~~y 93 (156)
T cd01051 17 PDPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG--VPWT-AAY 93 (156)
T ss_pred CCHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CcCC-Ccc
Confidence 3444555555444 47999999999999999 688899999999999999999999999999975544 2342 333
Q ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 100 ILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 100 ~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
+...-.-...+--..+-|..--..|.++++... | +.+++++..+..||..|.+.
T Consensus 94 ----v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~ 147 (156)
T cd01051 94 ----IQSSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNA 147 (156)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHH
Confidence 222223355566667778888999999998863 4 66777899999999999865
No 17
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=97.89 E-value=0.00064 Score=54.46 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=92.7
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGA 103 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa 103 (218)
.+...|--.-++|+.|...|..+...++++ .+...+++...+|.+|..++-+++.++|.+|.. .|+..+- .|
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~-~~~~~~~---~~- 79 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNL-QRLGKLR---IG- 79 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CcCCCCC---cC-
Confidence 355666667799999999999999998765 556889999999999999999999999999976 3321110 00
Q ss_pred HhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhC-CCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 104 GSALLGPKGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 104 ~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~-~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
-...-.+.....-|+.+.+.|++-+..-.+ .| ....+.++.+-.||.+|...
T Consensus 80 ----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D---~~t~~~l~~~~~~e~~h~~~ 132 (153)
T cd00907 80 ----EDVPEMLENDLALEYEAIAALNEAIALCEEVGD---YVSRDLLEEILEDEEEHIDW 132 (153)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 123455666677788888888888754432 34 45556699999999999865
No 18
>PRK13456 DNA protection protein DPS; Provisional
Probab=97.67 E-value=0.0013 Score=56.50 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=101.0
Q ss_pred hHHHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhh-HHHHHH
Q psy9570 24 VSRQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPF-WNVAGF 99 (218)
Q Consensus 24 ~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~Pl-W~~~gf 99 (218)
.+..+-++|--+-|.|+-|.-=|.-..+++. ...++++++++..+|..|...+.+||.++|.-|.. +|- |.-.+
T Consensus 17 d~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~-~p~~~~~ls- 94 (186)
T PRK13456 17 DVDKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPR-DIREFHDIS- 94 (186)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ChHHHhhhh-
Confidence 5666777888899999999999998888876 45788999999999999999999999999999976 444 54321
Q ss_pred HHHHHhhhcCch--hhhHHH---HHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhHh
Q psy9570 100 ILGAGSALLGPK--GAMACT---VAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 165 (218)
Q Consensus 100 ~LGa~tal~G~~--~~~a~t---~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~ 165 (218)
+..-+-.+.. -...++ -.=|+-.-+.|++=++.....||....+ +.++-.||.+|.+.=.+
T Consensus 95 --~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l---~~~IL~dE~eH~~dl~~ 160 (186)
T PRK13456 95 --ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDL---ALAILQEEIEHEAWFSE 160 (186)
T ss_pred --cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHH
Confidence 1111122221 122222 2236666789999999999888877766 88899999999976544
No 19
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=97.65 E-value=0.0018 Score=52.81 Aligned_cols=127 Identities=16% Similarity=0.075 Sum_probs=92.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGNSS---VAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFIL 101 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~---~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~L 101 (218)
++.+...|=...+.|+.|...|..+..+..... +..++.+-+.+|.+|..+|-+++..+|++|.+- |+=
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~-~i~------- 75 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQ-DLG------- 75 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-cCC-------
Confidence 456677788888999999999999999886543 445778889999999999999999999999942 110
Q ss_pred HHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhh-CCCcccHHHHHHHHHHHHHHHhHHHhh
Q psy9570 102 GAGSALLGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 102 Ga~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~-~~d~~~~~l~~~i~~~rddE~eH~d~A 163 (218)
....--...-.+-..-.-|..+.+.|++.++.-. ..|+.+..+ ++.|-.||.+|.+.-
T Consensus 76 -~~~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~l---l~~~i~eee~h~~~l 134 (157)
T TIGR00754 76 -KLRIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDL---LEEILEDEEEHIDWL 134 (157)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHH
Confidence 0000011223444555667888899999987433 345444444 999999999998763
No 20
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=97.45 E-value=0.0088 Score=46.11 Aligned_cols=119 Identities=20% Similarity=0.251 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhcCchhh
Q psy9570 37 AGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGA 113 (218)
Q Consensus 37 AGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~ 113 (218)
+.|+.+.-.|..+......+ .+..+++.+.++|.+|..++.+++..+|..|+.-..-+.- +-.....-..+-.
T Consensus 9 ~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~----~~~~~~~~~~~~~ 84 (142)
T PF00210_consen 9 ALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPE----IPKPPEWTDPREA 84 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH----HHSSSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh----hhccccCCcHHHH
Confidence 57899999999998877644 5778899999999999999999999999999875543222 0000011256778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCC-CcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 114 MACTVAVESVIVDHYNEQLRALMSD-PAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 114 ~a~t~aVE~~V~~Hy~~Ql~~L~~~-d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
+...-+.|..+.+.|++.+..-... | ..+.+.+..|.+||.+|...
T Consensus 85 l~~~l~~e~~~~~~~~~l~~~a~~~~D---~~t~~~~~~~l~~~~~~~~~ 131 (142)
T PF00210_consen 85 LEAALEDEKEIIEEYRELIKLAEKEGD---PETADFLDEFLEEEEKHIWM 131 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999776653 4 56666699999999998754
No 21
>PRK13456 DNA protection protein DPS; Provisional
Probab=97.11 E-value=0.0017 Score=55.72 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPT 88 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS 88 (218)
..-+..||+.|-.+|.||+.-|+=-...++ +|-.+..+.+++.+|.+|..||+++|.. |||
T Consensus 105 ~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~---~~~ 167 (186)
T PRK13456 105 PTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFSELLGG---GPS 167 (186)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhc---CCC
Confidence 336899999999999999999998776664 6777899999999999999999999964 676
No 22
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.11 E-value=0.013 Score=46.48 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=87.2
Q ss_pred HHhhhchhHHHHHHHHHHHHHh--------hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH
Q psy9570 31 IIRVDHAGELGADRIYAGQMAV--------LGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILG 102 (218)
Q Consensus 31 ~lRVdHAGE~gA~~IY~GQ~~v--------~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LG 102 (218)
+|..--..|+-+...|...+.- ..++.++..++++.++|..|...+++.+. |.+|. -.|-...
T Consensus 5 iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~-~~~~~~~------ 75 (137)
T PF13668_consen 5 ILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV-PPPAYDF------ 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC-CCCcccc------
Confidence 3444445789999999988872 33567899999999999999999999996 33331 1111111
Q ss_pred HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 103 AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 103 a~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
.......+...+..-..+|.....-|......+. +++++..+.++-.+|.+|...
T Consensus 76 ~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~-----~~~~~~~~~~i~~~Ea~H~~~ 130 (137)
T PF13668_consen 76 PFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIE-----DPELKALAASIAGVEARHAAW 130 (137)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666777889999999999998774 367888899999999999753
No 23
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=97.00 E-value=0.017 Score=45.91 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=85.0
Q ss_pred HHHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhh
Q psy9570 30 EIIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSA 106 (218)
Q Consensus 30 r~lRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ta 106 (218)
..|+-.=+||.-|...|.....+++. +.+...++....+|..|-..|-++|..++.+|. .|.-...
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~--~~~~~~~--------- 72 (134)
T cd01041 4 KNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT--GPPIGIG--------- 72 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--CCCCCcc---------
Confidence 34566678999999999999999874 457788999999999999999999999999999 3311110
Q ss_pred hcCchhhhHHHHHHHHH-HHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 107 LLGPKGAMACTVAVESV-IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 107 l~G~~~~~a~t~aVE~~-V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
.-.-.+-..-..|.. +.+-|++=++.-...+ +......++.+..||.+|.+.
T Consensus 73 --~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~--d~~~~~~f~~i~~~E~~H~~~ 125 (134)
T cd01041 73 --DTLENLKAAIAGETYEYTEMYPEFAEVAEEEG--FKEAARSFEAIAEAEKVHAER 125 (134)
T ss_pred --hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 112333344445553 5577777665544332 355566699999999999864
No 24
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=96.99 E-value=0.033 Score=44.87 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=90.2
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch--h---hHHHHHH
Q psy9570 28 LDEIIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL--P---FWNVAGF 99 (218)
Q Consensus 28 i~r~lRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~--P---lW~~~gf 99 (218)
+...|----++|+.|...|.-+...+.+ |.+...++...++|.+|-..+-+++..+|..|++-. + -|.
T Consensus 4 ~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~---- 79 (156)
T cd01055 4 LEKALNEQINLELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFE---- 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccC----
Confidence 4445555668999999999999988863 567889999999999999999999999999987622 1 121
Q ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhh-CCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 100 ILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 100 ~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~-~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
...-++...-..|..+.+.|++=++.-. ..| ....+.++.|-+||.+|.+.
T Consensus 80 ---------~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D---~~~~~~l~~~l~~q~e~~~~ 131 (156)
T cd01055 80 ---------SLLEVFEAALEHEQKVTESINNLVDLALEEKD---YATFNFLQWFVKEQVEEEAL 131 (156)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHHHHHHHH
Confidence 1224566667788889999988776544 345 44455589999999999855
No 25
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=96.80 E-value=0.0078 Score=50.91 Aligned_cols=97 Identities=25% Similarity=0.251 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHH----HHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhC
Q psy9570 62 IQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFIL----GAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS 137 (218)
Q Consensus 62 l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~L----Ga~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~ 137 (218)
+-+=..+|.-||-.|.++- .||++.=.+-+.+-++ =++.=++.++.+.-++.-+|+.-..=|.+-|+++.+
T Consensus 45 lleEaeNErmHLltf~~l~-----~p~~~~r~~v~~~q~vfy~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~ 119 (168)
T cd01053 45 LLEEAENERMHLLIFEELG-----GPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEE 119 (168)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Confidence 3344678999999999653 3555443332222111 123556779999999999999999999999988864
Q ss_pred CC----------------cccHHHHHHHHHHHHHHHhHHHhh
Q psy9570 138 DP----------------AANRELMDVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 138 ~d----------------~~~~~l~~~i~~~rddE~eH~d~A 163 (218)
.. ++...|+++|..+|+||.+|+++=
T Consensus 120 g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~vn 161 (168)
T cd01053 120 GLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKVN 161 (168)
T ss_pred cccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHHHH
Confidence 21 245679999999999999999863
No 26
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.77 E-value=0.11 Score=42.21 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=92.7
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHH---
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGA--- 103 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa--- 103 (218)
.+..+|+.++=|+-| |+-=+.-.++|.++..++++..+=..|...++..+..+|..|---..+ .|.+-..
T Consensus 4 ~Ln~Lie~~~D~~~g----Y~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~---~g~lhr~w~~ 76 (139)
T TIGR02284 4 SLNDLIEISIDGKDG----FEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSM---VGSLHQFWGK 76 (139)
T ss_pred HHHHHHHHcccHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcH---HHHHHHHHHH
Confidence 466777777777644 444444457899999999999999999999999999999988642222 2222222
Q ss_pred HhhhcC---chhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 104 GSALLG---PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 104 ~tal~G---~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
+.+++| +.+++.=.+-.|+.+.+-|++=|..= + -.++++++|++.+.++..|+|.
T Consensus 77 lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~-~---l~~~~r~~l~~q~~~i~~~~d~ 134 (139)
T TIGR02284 77 IRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQ-D---TPAAARDVALRQYPGVRACHDV 134 (139)
T ss_pred HHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcC-C---CChHHHHHHHHHHHHHHHHHHH
Confidence 235556 77888888888999999999988652 1 1356667799999999999986
No 27
>PLN02478 alternative oxidase
Probab=96.65 E-value=0.017 Score=53.13 Aligned_cols=97 Identities=27% Similarity=0.322 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHH--H--HHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHh
Q psy9570 60 PKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVA--G--FILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRAL 135 (218)
Q Consensus 60 ~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~--g--f~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L 135 (218)
..++| ..+|.-||-.|.++. .|+.+.=+.-+. | |.+=++.=++.++.+.-++.-+|+.-..-|.+-|+++
T Consensus 188 tLLeE-AeNERMHLLtf~~l~-----~p~w~eR~lv~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEEEAV~TYT~~L~ei 261 (328)
T PLN02478 188 ALLEE-AENERMHLMTFMEVA-----KPKWYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEFLKDL 261 (328)
T ss_pred HHHHH-HHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444 568999999999876 466554433111 1 1111345677899999999999999999999999987
Q ss_pred hCCC----------------cccHHHHHHHHHHHHHHHhHHHh
Q psy9570 136 MSDP----------------AANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 136 ~~~d----------------~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
.+.. |+..-|+++|..+|+||.+|+|.
T Consensus 262 d~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdV 304 (328)
T PLN02478 262 DAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDV 304 (328)
T ss_pred hcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhcc
Confidence 4311 34577999999999999999975
No 28
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=96.45 E-value=0.031 Score=48.74 Aligned_cols=96 Identities=28% Similarity=0.295 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHH---HHHHHHH-HHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhC
Q psy9570 62 IQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWN---VAGFILG-AGSALLGPKGAMACTVAVESVIVDHYNEQLRALMS 137 (218)
Q Consensus 62 l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~---~~gf~LG-a~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~ 137 (218)
+.+=.++|.-||-.|.++- .|+++.=+.- .+.|... ++.-++-++++.-+++-+|+.-..=|.+-|+++.+
T Consensus 85 lleEaeNErmHLli~~~l~-----~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~ 159 (207)
T PF01786_consen 85 LLEEAENERMHLLIFEELG-----KPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDE 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3344678999999999754 4554433221 1222222 45667889999999999999999999999988764
Q ss_pred CC----------------cc-cHHHHHHHHHHHHHHHhHHHh
Q psy9570 138 DP----------------AA-NRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 138 ~d----------------~~-~~~l~~~i~~~rddE~eH~d~ 162 (218)
.. |+ ...|+++|..+|+||.+|+|.
T Consensus 160 g~l~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~v 201 (207)
T PF01786_consen 160 GKLPNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDV 201 (207)
T ss_pred CCCCCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHh
Confidence 21 22 457999999999999999975
No 29
>PRK10635 bacterioferritin; Provisional
Probab=96.25 E-value=0.0092 Score=49.59 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=51.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRK 82 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~ 82 (218)
+-+..+++.|.+.|..|+..|+=-+..+. +...+..+++++++|.+|+.|+++.+..
T Consensus 81 ~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~ 140 (158)
T PRK10635 81 EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDL 140 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998888754 5577899999999999999999999865
No 30
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.23 E-value=0.29 Score=39.33 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CcchhhHHHHHHHHHHHhhhcCch
Q psy9570 39 ELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP-------TALLPFWNVAGFILGAGSALLGPK 111 (218)
Q Consensus 39 E~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~Rp-------S~L~PlW~~~gf~LGa~tal~G~~ 111 (218)
|.-|-..|....--.+ .++........|.+|...+..++.++++-- ..+.|.. +-=....+.....
T Consensus 12 Ek~a~~~Y~~~~~k~~---~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~----~~~l~~~~~~s~~ 84 (135)
T cd01048 12 EKLARDVYLALYEKFG---GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQ----YNQLVEQGPKSLQ 84 (135)
T ss_pred HHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccchh----HHHHHHhccccHH
Confidence 6677788888777654 345577788999999999999999888632 2222222 1111234555566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhHh
Q psy9570 112 GAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 165 (218)
Q Consensus 112 ~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~ 165 (218)
.++-.-..+|..=-..|++=+..-. +++++.++..+++.|.+|+.-+..
T Consensus 85 ~al~~g~~~E~~~i~~ye~~~~~~~-----d~d~k~v~~~L~~~e~~H~~~f~~ 133 (135)
T cd01048 85 DALEVGVLIEELDIADYDRLLERTQ-----NPDIRDVFENLQAASRNHHLPFFR 133 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777788888899998886653 377888899999999999986654
No 31
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.07 E-value=0.012 Score=47.76 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=48.9
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy9570 28 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELI 80 (218)
Q Consensus 28 i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l 80 (218)
+..+||.|=..|..|...|..++...+++.++..++++..+|+.|+.+|.++|
T Consensus 102 ~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 102 IKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45599999999999999999999988899999999999999999999998764
No 32
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=96.01 E-value=0.021 Score=47.33 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
-+..+|+-|-++|.+|...|.=+.....+|.++..+.....+|..|...|.+.|.+.
T Consensus 99 d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 99 NLVADLRSNIAAESRARLTYERLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999999999999999999999865
No 33
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=95.91 E-value=0.79 Score=37.84 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=89.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch-hhH-HHHHHHHH
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL-PFW-NVAGFILG 102 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~-PlW-~~~gf~LG 102 (218)
+.....-||==|+.|.-+...+..+...+.+|.++..++++.++...|..++++.+..+|..|+-.. |.- .+.+-+-+
T Consensus 3 ~~~~~~~L~d~y~aE~q~~~~l~~~~~~a~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~ 82 (159)
T PF05974_consen 3 RDLFIDELRDLYSAEKQLLKALPKLAEAASSPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQE 82 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHH
Confidence 3455667788899999999999999999999999999999999999999999999999999999876 433 23333333
Q ss_pred HHhhhcCchhhhHHHHHHHHHHHHHHHH-----HHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 103 AGSALLGPKGAMACTVAVESVIVDHYNE-----QLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 103 a~tal~G~~~~~a~t~aVE~~V~~Hy~~-----Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
++-...++....-...-.=-+..+||+- -+.--...+ ..+..+.+++..+||.+..+.
T Consensus 83 ~~~~~~~d~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG--~~e~a~lL~~~L~EE~~~~~~ 145 (159)
T PF05974_consen 83 LIEEFAEDPAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLG--DEEAAQLLEQNLDEEEAADEK 145 (159)
T ss_dssp HHHT-S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 4444345443332222222333455542 221111111 356777799999999877654
No 34
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.82 E-value=0.14 Score=53.64 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=91.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh-hHHHHHHHHHHH
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLP-FWNVAGFILGAG 104 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~P-lW~~~gf~LGa~ 104 (218)
.....+|+.---=|..+...|+-.+.-++++.++.++.+++++|.+|..+|.+++.+. -|..-.- .|....+..+..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 936 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETSDPVLKELFLKFAGMEQEHMATLARRYHAA--APSPTEGFKIERAAIMAGVK 936 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCcccccccchhhhhhhhc
Confidence 4455677777777999999999999988999999999999999999999999998642 1210000 011122222222
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 105 SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 105 tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
.......-++-.-...|+.--+.|.+-...-. |+ .+.++.+++|-++|.+|...
T Consensus 937 ~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~--d~--e~~k~l~~~LA~EEk~Hl~~ 990 (1006)
T PRK12775 937 GRPDDPGNLFRIAIEFERRAVKFFKERVAETP--DG--SVERQLYKELAAEEREHVAL 990 (1006)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhhCC--Ch--HHHHHHHHHHHHHHHHHHHH
Confidence 22334455777778889998999988775542 21 23566699999999999865
No 35
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=95.44 E-value=0.44 Score=37.55 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=81.1
Q ss_pred HHHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhh
Q psy9570 30 EIIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSA 106 (218)
Q Consensus 30 r~lRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ta 106 (218)
..|+---.||.-|...|.....+++. +.+...+.....+|..|-..|.+.+... |
T Consensus 4 ~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i---~------------------- 61 (123)
T cd01046 4 EDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKV---S------------------- 61 (123)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---c-------------------
Confidence 45666678999999999999999874 4677889999999999999999865221 1
Q ss_pred hcCc-hhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 107 LLGP-KGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 107 l~G~-~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
|+ .-.+-....-|..+.+.|++=++.-...+ +......++.+.++|.+|.+.
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~eg--d~~~~~~~~~~~~~E~~H~~~ 114 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEG--LDEAHDFFHEAAKDEARHGKM 114 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 22 45566667778888888887665554332 355556699999999999875
No 36
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=95.35 E-value=0.53 Score=41.86 Aligned_cols=123 Identities=22% Similarity=0.234 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCCcchhhHHHHH-HHHHHHhhhcCchh
Q psy9570 37 AGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKA---KFEELIRKYRVRPTALLPFWNVAG-FILGAGSALLGPKG 112 (218)
Q Consensus 37 AGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~---~f~~~l~~~~~RpS~L~PlW~~~g-f~LGa~tal~G~~~ 112 (218)
.||.==++-++.-..-+++|.+++.++-+..||.-|-+ .+++.+.+.|.. +.|.....- ...+.+.-..+.+.
T Consensus 38 ~GE~ffi~svr~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~~G~~---~~~~~~~~~~~~~~~l~~~~~~~~ 114 (253)
T PF10118_consen 38 EGERFFIRSVRRARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEAQGYD---VRPFLEKMEKLFLKFLEKRLSLKF 114 (253)
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHHHhhhcCHHH
Confidence 36743333333333444889999999999999999864 688888888764 566443333 33445555699999
Q ss_pred hhHHHHHHHHH--H-HHHHHHHHHHh-hCCCcccHHHHHHHHHHHHHHHhHHHhhHh
Q psy9570 113 AMACTVAVESV--I-VDHYNEQLRAL-MSDPAANRELMDVIHKFRDEEQEHHDTGLE 165 (218)
Q Consensus 113 ~~a~t~aVE~~--V-~~Hy~~Ql~~L-~~~d~~~~~l~~~i~~~rddE~eH~d~A~~ 165 (218)
-+|+|+|+|.. + .+.+=++-..+ .. .++.+++.+.==-.||.||+..|-+
T Consensus 115 ~La~taalEH~TA~la~~~L~~~~~~~~~---adp~~~~Lw~WHa~EE~EHksVAfD 168 (253)
T PF10118_consen 115 QLAYTAALEHFTAVLAEWLLNNPELLFAG---ADPEMRDLWRWHAAEEVEHKSVAFD 168 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhcc---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999842 1 11111111111 11 3455666677777899999998855
No 37
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=95.07 E-value=0.056 Score=42.88 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=48.3
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVL--GNSSVAPKIQEMWDQEKAHKAKFEELI 80 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~--~~~~~~~~l~~~~~~E~~Hl~~f~~~l 80 (218)
-+..+++.+-..|..+..-|+.....+ +++.....+.+++.+|.+|+.||+++|
T Consensus 93 ~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~~~~~~~~ 148 (148)
T cd01052 93 DVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHEEDLEELL 148 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456899999999999999999999877 566778999999999999999999874
No 38
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=94.62 E-value=1 Score=36.78 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch---hhHHHHHHHHHHHhhhc
Q psy9570 37 AGELGADRIYAGQMAVLGN-----SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFILGAGSALL 108 (218)
Q Consensus 37 AGE~gA~~IY~GQ~~v~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~ 108 (218)
..|+.|...|-.....+.+ +.+...++...++|.+|-..|-+++..+|.+|.+-. |. -.-.-
T Consensus 13 ~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~----------~~~~~ 82 (161)
T cd01056 13 NLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPE----------KDEWG 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCC----------CcccC
Confidence 3689999999999998763 456788999999999999999999999999998743 21 00112
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhC-CCcccHHHHHHHHH-HHHHHHhHHHhhH
Q psy9570 109 GPKGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHK-FRDEEQEHHDTGL 164 (218)
Q Consensus 109 G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~-~d~~~~~l~~~i~~-~rddE~eH~d~A~ 164 (218)
...-++...-+.|..|...|++-++.=.. .| .....-|+. |-+|+.+|-+..-
T Consensus 83 ~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D---~~t~~fl~~~fl~eQ~e~~~~~~ 137 (161)
T cd01056 83 SGLEALELALDLEKLVNQSLLDLHKLASEHND---PHLADFLESEFLEEQVESIKKLA 137 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCC---HhHHHHHHHHhhHHHHHHHHHHH
Confidence 34566778888999999999996643332 35 444455887 9999998887643
No 39
>PRK10304 ferritin; Provisional
Probab=94.49 E-value=1.1 Score=37.47 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch---hhHHHHHHHHHHHhhhcCch
Q psy9570 38 GELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFILGAGSALLGPK 111 (218)
Q Consensus 38 GE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~G~~ 111 (218)
-|+.|...|-.+...+.+ +.+...+.....+|.+|-..|-++|..+|.+|.+-. |.= .+ -...
T Consensus 16 ~El~As~~Yl~ma~~~~~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~-~~----------~s~~ 84 (165)
T PRK10304 16 LELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA-EY----------SSLD 84 (165)
T ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc-cc----------CCHH
Confidence 589999999999999874 456688889999999999999999999999998643 321 11 1224
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh-CCCcccHHHHHHHHHHHHH---HHhHHHhh
Q psy9570 112 GAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDE---EQEHHDTG 163 (218)
Q Consensus 112 ~~~a~t~aVE~~V~~Hy~~Ql~~L~-~~d~~~~~l~~~i~~~rdd---E~eH~d~A 163 (218)
..+-+.-+-|..|...|++=+..=. ..|..+..+ |..|-+| |..|.+.=
T Consensus 85 e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~f---l~~fl~EQveEe~~~~~l 137 (165)
T PRK10304 85 ELFQETYKHEQLITQKINELAHAAMTNQDYPTFNF---LQWYVSEQHEEEKLFKSI 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5677788889999999988664332 245444555 7788877 77776543
No 40
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=94.19 E-value=0.15 Score=38.85 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 79 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~ 79 (218)
..-...+|+..=-+|..++..|.-.+....++.++..++++.++|..|..+++++
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445668888899999999999999998888899999999999999999999875
No 41
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=93.43 E-value=1.1 Score=35.39 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=83.2
Q ss_pred HhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHh-hh
Q psy9570 32 IRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGS-AL 107 (218)
Q Consensus 32 lRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~t-al 107 (218)
|....|-+..+.--|+..-...+.+ .+.+++++..++|.+|...+.+|+..+|+.|..-..-+---+. +.-.. +-
T Consensus 3 Ln~~lA~~~~~~~~~~~~HW~v~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~-l~~~~~~~ 81 (139)
T cd01043 3 LNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELST-IKEEPAGV 81 (139)
T ss_pred HHHHHHHHHHHHHHHhCCCcCccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCC-CCCCCCCC
Confidence 4445556666666666665555544 5678899999999999999999999999999875422221111 11111 22
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhh-CCCcccHHHHHHHHHHHHHHHhHH
Q psy9570 108 LGPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHKFRDEEQEHH 160 (218)
Q Consensus 108 ~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~-~~d~~~~~l~~~i~~~rddE~eH~ 160 (218)
...+-.+......|+.+...|++-+..-. ..|+.+.++ +..+..++..|.
T Consensus 82 ~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~l---l~~il~~~ek~~ 132 (139)
T cd01043 82 LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADL---LTEIIRELEKQA 132 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHH
Confidence 23355567777888888889999887665 345555555 777777777665
No 42
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=93.26 E-value=0.25 Score=41.39 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=52.3
Q ss_pred hHhHHHHHHHHhhhchhHHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 22 KRVSRQLDEIIRVDHAGELGADRIYAGQMAV--LGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 22 ~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v--~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
|+.-.-++.+|+|-=+.|.||++=|.---.. -++|...+..+..+.+|.+|..||-+++.+.
T Consensus 99 Pedp~D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~~ 162 (172)
T COG2406 99 PEDPYDIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYELAEAILREEIEHRTWFLELLGKE 162 (172)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4555568999999999999999999875443 3578888999999999999999999999764
No 43
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=92.89 E-value=0.21 Score=38.12 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=51.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhh
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSA 106 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ta 106 (218)
.+..+++.+|-| ...|+-=+.-++++.++..++++..+-..|...+.+++.++|..|.-...++....=+.--+.+
T Consensus 5 ~Ln~Ll~~~~d~----~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~ 80 (111)
T PF09537_consen 5 ALNDLLKGLHDG----IEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKS 80 (111)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHH
Confidence 455566655554 4667766666778999999999999999999999999999999998887777655544444444
Q ss_pred hcCch---hhhHHHHHHHHHHHHHHHHHH
Q psy9570 107 LLGPK---GAMACTVAVESVIVDHYNEQL 132 (218)
Q Consensus 107 l~G~~---~~~a~t~aVE~~V~~Hy~~Ql 132 (218)
.++.. +.+.=..-.|+.+.+-|++=|
T Consensus 81 ~~~~~d~~aiL~~~~~gE~~~~~~y~~aL 109 (111)
T PF09537_consen 81 ALGGDDDEAILEECERGEDMALEAYEDAL 109 (111)
T ss_dssp S-----H----------------------
T ss_pred HhcCCCccchhhhhhhhhhhhhhhccccc
Confidence 34333 466666777777777777655
No 44
>PF13668 Ferritin_2: Ferritin-like domain
Probab=91.93 E-value=0.42 Score=37.70 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9570 28 LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRK 82 (218)
Q Consensus 28 i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~ 82 (218)
...+++.--.-|..+...|.|+...+.+++++..+-.+...|..|..|++.++.+
T Consensus 83 ~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 83 DASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666667799999999999999999999999999999999999999998854
No 45
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=91.79 E-value=0.56 Score=35.67 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=50.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 79 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~ 79 (218)
..+..+++..--+|.-+...|.-++....++.++..+..+..+|..|...|.++
T Consensus 83 ~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 83 ENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377899999999999999999999999999999999999999999999999886
No 46
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=91.31 E-value=0.65 Score=33.49 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9570 29 DEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 79 (218)
Q Consensus 29 ~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~ 79 (218)
..++.....+|..+...|......+.++.++..+..+..+|..|...+.+.
T Consensus 79 ~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 79 AEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357777799999999999999998888999999999999999999998875
No 47
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=90.75 E-value=6 Score=32.37 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHHHhhC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch---hhHHHHHHHHHHHhhhc
Q psy9570 37 AGELGADRIYAGQMAVLG-----NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL---PFWNVAGFILGAGSALL 108 (218)
Q Consensus 37 AGE~gA~~IY~GQ~~v~~-----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~---PlW~~~gf~LGa~tal~ 108 (218)
.-|+.|...|-.....+. .+.+...++...++|..|-..+-+.|..+|.+|.+-. |- ...| -
T Consensus 13 ~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~--~~~~--------~ 82 (160)
T cd00904 13 NLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPP--SDEW--------G 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCc--cccc--------C
Confidence 469999999999999983 4567788999999999999999999999999988643 21 0000 0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhh-CCCcccHHHHHHHHH-HHHHHHhH
Q psy9570 109 GPKGAMACTVAVESVIVDHYNEQLRALM-SDPAANRELMDVIHK-FRDEEQEH 159 (218)
Q Consensus 109 G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~-~~d~~~~~l~~~i~~-~rddE~eH 159 (218)
...-++-..-+.|..|.+.|++-.+.-. ..|. ....-|+. |-+|..+-
T Consensus 83 ~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~---~t~~fl~~~fi~eQ~ee 132 (160)
T cd00904 83 GTLDAMEAALKLEKFVNQALLDLHELASEEKDP---HLCDFLESHFLDEQVKE 132 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHhhchhhHHHHHH
Confidence 1234677778889999998887764332 3443 33344666 66665543
No 48
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=90.33 E-value=5.3 Score=35.71 Aligned_cols=138 Identities=16% Similarity=0.108 Sum_probs=80.5
Q ss_pred CChHhHHHHHH-----HHhhhchhHHHHH-----HHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Q psy9570 20 HQKRVSRQLDE-----IIRVDHAGELGAD-----RIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR----V 85 (218)
Q Consensus 20 l~~~~~~~i~r-----~lRVdHAGE~gA~-----~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~----~ 85 (218)
|++++|..+.+ ++...=.+|...+ .|++++...-...+.+..+.+...+|..|-.-|.+.+.+.+ .
T Consensus 66 l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l 145 (304)
T PF11583_consen 66 LSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGL 145 (304)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 56666665544 4555556787776 67777665433345667777889999999999999997765 2
Q ss_pred CCCcchhhHHHHHHHHHHHhhhcCc----hhhhHHHHHHHHHHHHHHHHHHHHhhCCCcc-cHHHHHHHHHHHHHHHhHH
Q psy9570 86 RPTALLPFWNVAGFILGAGSALLGP----KGAMACTVAVESVIVDHYNEQLRALMSDPAA-NRELMDVIHKFRDEEQEHH 160 (218)
Q Consensus 86 RpS~L~PlW~~~gf~LGa~tal~G~----~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~-~~~l~~~i~~~rddE~eH~ 160 (218)
.| .|.-+.....+..+...++. -..++++-..|+.|+ +|+..+. .|+. .+-++.+.+--..||..|.
T Consensus 146 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~-~~~~~~~----~D~~iqP~~r~v~~iH~~DEaRHi 217 (304)
T PF11583_consen 146 AP---LPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID-AYQREIA----RDETIQPLVRQVMRIHVRDEARHI 217 (304)
T ss_dssp ------S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH-HHHHHHH----T-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred cc---CCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HHHHHhh----cCCCCChHHHHHHHHHHHHHHHHH
Confidence 22 22223333333333444443 345666666666655 6666552 2332 3455556666678999999
Q ss_pred HhhHh
Q psy9570 161 DTGLE 165 (218)
Q Consensus 161 d~A~~ 165 (218)
..|.+
T Consensus 218 ~f~~~ 222 (304)
T PF11583_consen 218 AFARE 222 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 49
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=88.88 E-value=1.2 Score=36.22 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEELIRK 82 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~ 82 (218)
-+..+++-+-..|..+..-|+..+..+ +++....+++.+..+|.+|+.+|++.+..
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~ 140 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLEL 140 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998755 46678899999999999999999999864
No 50
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=88.36 E-value=1.2 Score=35.15 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=47.7
Q ss_pred HHHHHHHhhhchhHHH-HHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 26 RQLDEIIRVDHAGELG-ADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~g-A~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
..+..+|+-+-.||.. +...|.-=..++. +......++.++.+|..|..||++.|..+
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALENL 133 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566899999999996 7678877666664 45677899999999999999999998753
No 51
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=87.46 E-value=1.3 Score=34.27 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=50.1
Q ss_pred HhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHH
Q psy9570 32 IRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNV 96 (218)
Q Consensus 32 lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~ 96 (218)
+|..---|+-|...|.--+.+.++++++..+++..++|.+|..-.-+.|.++ .|-|..
T Consensus 22 a~~SLiEEiEA~~wY~qR~~~tKD~~~r~ImehnrdeE~eHa~mlLEwlrR~-------~p~wd~ 79 (103)
T COG3461 22 ARQSLIEEIEAMMWYDQRADATKDEDLRAIMEHNRDEEKEHAAMLLEWLRRH-------DPAWDA 79 (103)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHcccHHHHHHHHHHHHHHHc-------CchHHH
Confidence 3455668999999999888888999999999999999999999999999887 566754
No 52
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=86.93 E-value=2.1 Score=34.00 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
-+..+|+-+...|..+...|+....++. ++.+..+++....+|++|..+|++++...
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~ 140 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLI 140 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999988763 56788999999999999999999998664
No 53
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=86.05 E-value=2.3 Score=33.26 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9570 30 EIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIR 81 (218)
Q Consensus 30 r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~ 81 (218)
.+++..=.+|..|...|..+... ++.+.++..+|..|...+.+++.
T Consensus 79 ~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 79 FVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 35565668999999999999876 67899999999999999998875
No 54
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=86.04 E-value=10 Score=34.00 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhh-CC-C-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---hhhHHHHHHHHHHHhhhcCchh
Q psy9570 39 ELGADRIYAGQMAVL-GN-S-SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL---LPFWNVAGFILGAGSALLGPKG 112 (218)
Q Consensus 39 E~gA~~IY~GQ~~v~-~~-~-~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L---~PlW~~~gf~LGa~tal~G~~~ 112 (218)
|+-|+.++-=-+.-+ ++ | +...-.-+.+.+|..|...++++|.++|++-.=| +-||..+--.- -.++.+
T Consensus 78 E~~AIdLa~Da~~RF~~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~---~dl~~R-- 152 (253)
T PF04305_consen 78 ELNAIDLALDAIYRFHPNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTA---HDLLAR-- 152 (253)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhc---cCHHHH--
Confidence 554444433333333 32 2 4556677889999999999999999999876543 44565541110 011111
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhH
Q psy9570 113 AMACTVAVESVI-VDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGL 164 (218)
Q Consensus 113 ~~a~t~aVE~~V-~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~ 164 (218)
||.+-=|=+.= -++--..+++|...+ +.+..++++.+..||..|=..|.
T Consensus 153 -~A~vp~~~EArGLD~~p~~~~k~~~~g--D~~sa~iL~~I~~DEi~HV~~G~ 202 (253)
T PF04305_consen 153 -MALVPRVLEARGLDVTPFIIEKFRSAG--DEESAAILEIILRDEIGHVAIGN 202 (253)
T ss_pred -HHHHHHHHHhhCCCCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHhhH
Confidence 11111111111 111122234443322 23444559999999999988874
No 55
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=85.24 E-value=2.4 Score=33.39 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=49.2
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
.-+..++..+..||.....-|..=..+++ +.....++....+.|..|..++++++..+
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667888899999999888987777775 45778999999999999999999999764
No 56
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=81.38 E-value=32 Score=29.08 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=98.6
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcchhhHHHHHHH
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP-TALLPFWNVAGFI 100 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~Rp-S~L~PlW~~~gf~ 100 (218)
.+.+-.+|=.+-|.|.-+-.-|.=-..-++. .....+++++..+-..|...+-++|.++++.| --+.-+|.++
T Consensus 15 ~~kli~~Llka~AaE~tt~YYYtilr~~l~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dIS--- 91 (172)
T COG2406 15 KDKLIELLLKAAAAEWTTYYYYTILRYALKGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDIS--- 91 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhc---
Confidence 3444555556888999888888765554442 24556777777788899999999999999875 4578889887
Q ss_pred HHHHhhhcCchh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhHhc
Q psy9570 101 LGAGSALLGPKG-----AMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEH 166 (218)
Q Consensus 101 LGa~tal~G~~~-----~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~~ 166 (218)
|.-.+-++.++ .+...++-|+--.+-|.+-.+--...||+.-+| -+.+-.||.+|+.-=++.
T Consensus 92 -gC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeL---a~~IL~eEi~hr~~~~~l 158 (172)
T COG2406 92 -GCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYEL---AEAILREEIEHRTWFLEL 158 (172)
T ss_pred -CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHH---HHHHHHHHHHHHHHHHHH
Confidence 45667776654 355566667777788888776666778877777 666778999999776664
No 57
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=80.00 E-value=13 Score=33.86 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=95.5
Q ss_pred hchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-----hhhHHH----------HHH
Q psy9570 35 DHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL-----LPFWNV----------AGF 99 (218)
Q Consensus 35 dHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L-----~PlW~~----------~gf 99 (218)
---||+.|-.=|--|-+-.+++..+..+.....+|.-|+.-....+..+..- .-. .|+-.. ...
T Consensus 31 G~~GElsaamqYl~Q~fn~r~~~~~dll~DI~TEEl~HlEmvat~I~~L~~g-a~~e~~~~~~l~~s~~~~~n~~h~~~~ 109 (277)
T COG3546 31 GAFGELSAAMQYLFQGFNVRDAKYKDLLMDIGTEELSHLEMVATMINLLNKG-ATGEGAEEAELYGSGLGGMNPHHISVL 109 (277)
T ss_pred CcchHHHHHHHHHHhhcccCchHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC-CCCCCCcchhhHHhhccCCCchhhhhh
Confidence 3469999999999999988888889999999999999999999998776422 222 444422 233
Q ss_pred HHHHH-hhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCC--------cccHHHHHHHHHHHHHHHhHHH
Q psy9570 100 ILGAG-SALLGPKGAMACTVAVESVIVDHYNEQLRALMSDP--------AANRELMDVIHKFRDEEQEHHD 161 (218)
Q Consensus 100 ~LGa~-tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d--------~~~~~l~~~i~~~rddE~eH~d 161 (218)
.+|+. +--.|-.|.-+++.+.-+.|.+-|.+--.+-...- .+++.++++|.-++.-|.-|..
T Consensus 110 ~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~ 180 (277)
T COG3546 110 LYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQN 180 (277)
T ss_pred ccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHH
Confidence 34444 55679999999999999999988877655543310 1357888999999999999974
No 58
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=77.96 E-value=41 Score=30.74 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHH---HHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhc--Cch
Q psy9570 37 AGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKA---KFEELIRKYRVRPTALLPFWNVAGFILGAGSALL--GPK 111 (218)
Q Consensus 37 AGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~---~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~--G~~ 111 (218)
+||.==+..|+.-..-+++|.++..++-+..||.-|-+ ..++++...+ .|.-....+..+-+.+-. |..
T Consensus 50 ~GE~fFvd~v~a~r~r~sdp~L~~dv~gFI~QEamHSraH~~yn~~~~a~~------~p~~e~~~~r~erll~~~~~~~~ 123 (280)
T COG3687 50 AGERFFVDSVKAYRPRLSDPQLRDDVQGFIGQEAMHSRAHAGYNDRLDAQG------TPFAEQIAWRFERLLGESPRGSP 123 (280)
T ss_pred chhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CchHHHHHHHHHHHhhhcCCCCc
Confidence 69988888888888888899999999999999987765 3566666655 677776666666443322 222
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHH-----HhhCCCcccHHHHHHHHHHHHHHHhHHHhhHhc
Q psy9570 112 --GAMACTVAVESVIVDHYNEQLR-----ALMSDPAANRELMDVIHKFRDEEQEHHDTGLEH 166 (218)
Q Consensus 112 --~~~a~t~aVE~~V~~Hy~~Ql~-----~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~~ 166 (218)
--.++|+|+|..- .=..++|- -+...| +...+..+==-.||.||++.|.+-
T Consensus 124 r~~q~a~~aAlEHfT-A~ma~~il~~~~l~~~~~d---P~m~~LwRWHa~EE~EHkaVAyDv 181 (280)
T COG3687 124 RLEQVAIIAALEHFT-AVMAEWILEHPQLLLVGAD---PVMLDLWRWHAAEEVEHKAVAYDV 181 (280)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhcCcchhccCCC---cHHHHHHHHhhHHHhhhHHHHHHH
Confidence 3567788887432 11112221 122233 445445666678999999999763
No 59
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=77.68 E-value=28 Score=32.76 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=101.1
Q ss_pred ccccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy9570 12 GFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA 89 (218)
Q Consensus 12 ~~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~ 89 (218)
.|..+-..++++.|+.--..|=-.=..|...-=+|+=-.--++ +|.+.+...-|..+|..|-...++-|.+.|+
T Consensus 64 eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l---- 139 (351)
T CHL00185 64 EFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNL---- 139 (351)
T ss_pred hhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCc----
Confidence 3444455688888888888888888999999999998777775 5899999999999999999999999999985
Q ss_pred chhhHHHHHHHHHHHhh-----hcCchhhhHHHHHHHH-------HHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHH
Q psy9570 90 LLPFWNVAGFILGAGSA-----LLGPKGAMACTVAVES-------VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQ 157 (218)
Q Consensus 90 L~PlW~~~gf~LGa~ta-----l~G~~~~~a~t~aVE~-------~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~ 157 (218)
+.=||.+|. .+.+|+++--|-=-|+ .|-+|++.| |+. +--.|-.-.+.-+.||-
T Consensus 140 --------~lDLgfLtk~rkYTfF~PkfI~YAtYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~FE~WCqDEn 205 (351)
T CHL00185 140 --------SLDLGFLTKSRKYTFFSPKFIFYATYLSEKIGYWRYITIYRHLEKN----PEY--RIYPIFKFFESWCQDEN 205 (351)
T ss_pred --------cccchhhccCCceeeecccceehhhHHHhhhhhhHHhHHHHHHHhC----ccc--ccchHHHHHHHHhcccc
Confidence 455666664 4566677666665555 345555544 211 34567778899999999
Q ss_pred hHHHh
Q psy9570 158 EHHDT 162 (218)
Q Consensus 158 eH~d~ 162 (218)
.|.|.
T Consensus 206 RHGdf 210 (351)
T CHL00185 206 RHGDF 210 (351)
T ss_pred hhHHH
Confidence 99985
No 60
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=77.65 E-value=32 Score=32.23 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=102.4
Q ss_pred ccccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy9570 12 GFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGN--SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA 89 (218)
Q Consensus 12 ~~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~--~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~ 89 (218)
.|..+...++++.|+.--..|=-.=..|...-=+|+--.--+++ |.+.+...-|...|..|-...++-|.+.|+
T Consensus 58 ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l---- 133 (337)
T TIGR02029 58 EFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGL---- 133 (337)
T ss_pred hhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCc----
Confidence 34444445889988888888878889999999999988777764 458999999999999999999999999885
Q ss_pred chhhHHHHHHHHHHHhh-----hcCchhhhHHHHHHHH-------HHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHH
Q psy9570 90 LLPFWNVAGFILGAGSA-----LLGPKGAMACTVAVES-------VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQ 157 (218)
Q Consensus 90 L~PlW~~~gf~LGa~ta-----l~G~~~~~a~t~aVE~-------~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~ 157 (218)
+.=||.+|. .+.+|+++--|-=-|+ .|-+|++.| |+. .--.|-.-.+.-+.||-
T Consensus 134 --------~lDLgfLtk~r~YTfF~PkfI~YAtYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~Fe~WCqDEn 199 (337)
T TIGR02029 134 --------ALDLGFLTKTRKYTFFRPKFIYYATYLSEKIGYWRYITIYRHLEEN----PEN--QFYPIFKYFESWCQDEN 199 (337)
T ss_pred --------ccchhhhccCCceeeeccceeehhhHhHhhhhhHHHHHHHHHHHhC----ccc--ccchHHHHHHHHhcccc
Confidence 445666653 3556666666655554 345555544 221 34567788899999999
Q ss_pred hHHHhh-HhcCCCc
Q psy9570 158 EHHDTG-LEHGAEQ 170 (218)
Q Consensus 158 eH~d~A-~~~ga~~ 170 (218)
.|.|.= .-.-++|
T Consensus 200 RHGd~F~~lmrsqP 213 (337)
T TIGR02029 200 RHGDAFAALMRSQP 213 (337)
T ss_pred hhHHHHHHHHhcCh
Confidence 999852 2234444
No 61
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=77.23 E-value=26 Score=32.56 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=98.7
Q ss_pred ccccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy9570 12 GFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA 89 (218)
Q Consensus 12 ~~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~ 89 (218)
.|..+...++++.|+.--..|=-.=..|...-=+|+--.--++ +|.+.+...-|...|..|-...++-|.+.|+
T Consensus 48 ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l---- 123 (323)
T cd01047 48 EFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNL---- 123 (323)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc----
Confidence 3434444577887887777777788999999999998777775 4899999999999999999999999999885
Q ss_pred chhhHHHHHHHHHHHhh-----hcCchhhhHHHHHHHH-------HHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHH
Q psy9570 90 LLPFWNVAGFILGAGSA-----LLGPKGAMACTVAVES-------VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQ 157 (218)
Q Consensus 90 L~PlW~~~gf~LGa~ta-----l~G~~~~~a~t~aVE~-------~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~ 157 (218)
+.=||.+|. .+-+|+++--|-=-|+ .|-+|++.| |+. .--.|-.-.+.-+.||-
T Consensus 124 --------~lDLgfLtk~r~YTfF~PkfI~YatYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~Fe~WCqDEn 189 (323)
T cd01047 124 --------ALDLGFLTKTRKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLERN----PEN--QFHPIFKYFENWCQDEN 189 (323)
T ss_pred --------ccchhhhccCCceeeeCccceeehhHhhhhhhhHHHHHHHHHHHhC----ccc--ccchHHHHHHHHhcccc
Confidence 445566553 3455666655555554 355555544 221 34567788899999999
Q ss_pred hHHHh
Q psy9570 158 EHHDT 162 (218)
Q Consensus 158 eH~d~ 162 (218)
.|.|.
T Consensus 190 RHGd~ 194 (323)
T cd01047 190 RHGDF 194 (323)
T ss_pred hhhHH
Confidence 99985
No 62
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=76.99 E-value=23 Score=33.37 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=102.8
Q ss_pred cccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy9570 13 FRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL 90 (218)
Q Consensus 13 ~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L 90 (218)
|..+-..++++.|+.--..|=-.=..|...-=+|+=-.--++ +|.+.+...-|...|..|-...++-|.+.|+
T Consensus 69 f~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l----- 143 (355)
T PRK13654 69 FDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGL----- 143 (355)
T ss_pred hhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc-----
Confidence 434444588888888888888888999999999998777776 8999999999999999999999999999985
Q ss_pred hhhHHHHHHHHHHHhh-----hcCchhhhHHHHHHHH-------HHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHh
Q psy9570 91 LPFWNVAGFILGAGSA-----LLGPKGAMACTVAVES-------VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQE 158 (218)
Q Consensus 91 ~PlW~~~gf~LGa~ta-----l~G~~~~~a~t~aVE~-------~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~e 158 (218)
+.=||.+|. .+.+|+++--|-=-|+ .|-+|++.| |+. .--.|-.-.+.-+.||-.
T Consensus 144 -------~lDLgfLtk~k~YTfF~PkfIfYatYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIF~~Fe~WCqDEnR 210 (355)
T PRK13654 144 -------SLDLGFLTKKKKYTFFPPKFIFYATYLSEKIGYWRYITIYRHLEKH----PEH--RFHPIFKFFENWCQDENR 210 (355)
T ss_pred -------cccchhhccCCceeeeCcceeeehhHhHhhhhHHHHHHHHHHHHhC----ccc--ccCchHHHHHHHhcccch
Confidence 445666653 3556666665555554 345555544 221 345677788999999999
Q ss_pred HHHhh-HhcCCCc
Q psy9570 159 HHDTG-LEHGAEQ 170 (218)
Q Consensus 159 H~d~A-~~~ga~~ 170 (218)
|.|.= .-.-++|
T Consensus 211 HGd~F~~lmraqP 223 (355)
T PRK13654 211 HGDFFALLMRAQP 223 (355)
T ss_pred hHHHHHHHHhcCc
Confidence 99852 2234444
No 63
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=76.66 E-value=42 Score=27.78 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=66.0
Q ss_pred cccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy9570 13 FRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTA 89 (218)
Q Consensus 13 ~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~ 89 (218)
+..+...++++.++.+..+|-...|-++....-|+.--...+.+ .+.+++.+..+++.+|.....+|+..+|..|.-
T Consensus 8 ~~~~~~~l~~~~~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~ 87 (162)
T PRK09448 8 LLYTRNDVPDSEKKATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALG 87 (162)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCC
Confidence 44455568888999999999999999999988888887777765 457899999999999999999999999998865
No 64
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=74.47 E-value=48 Score=28.10 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=49.8
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9570 28 LDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYR 84 (218)
Q Consensus 28 i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~ 84 (218)
...-|+-+-+||--|+..|.-=+.+++ .+.+....+....+|..|...+-+.+.+.+
T Consensus 5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 5 TEENLRKAFAGESMAVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456688899999999999988777775 578889999999999999999999999875
No 65
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=73.80 E-value=53 Score=27.64 Aligned_cols=121 Identities=19% Similarity=0.142 Sum_probs=90.0
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH
Q psy9570 28 LDEIIRVDHAGELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAG 104 (218)
Q Consensus 28 i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~ 104 (218)
+-+.|--.-.+|++|+.=|-=-..+.++. .+.....+-..+|..|-..+-+|+--+..-|.+ .|+=.
T Consensus 7 Vi~~LN~~L~~EL~ainQYflHsrM~~~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnl-q~~~~--------- 76 (157)
T COG2193 7 VIRLLNEALGLELAAINQYFLHSRMYKNWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNL-QDLGK--------- 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-ccccc---------
Confidence 33444444579999999998888888765 455666777889999999999999999998876 22110
Q ss_pred hhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHhhC-CCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 105 SALLGP--KGAMACTVAVESVIVDHYNEQLRALMS-DPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 105 tal~G~--~~~~a~t~aVE~~V~~Hy~~Ql~~L~~-~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
=..|. +=.+.|--+.|.-+-+-|.+=|..... .|.-+++| ++.+-.||.||.|-
T Consensus 77 -l~iG~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl---~~~iL~deEEHid~ 133 (157)
T COG2193 77 -LRIGETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDL---LEEILADEEEHIDW 133 (157)
T ss_pred -cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH---HHHHHcchHHHHHH
Confidence 22344 445677778888888999988877765 46567777 88888888889875
No 66
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=73.46 E-value=18 Score=34.03 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=100.2
Q ss_pred cccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy9570 13 FRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLG--NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL 90 (218)
Q Consensus 13 ~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~--~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L 90 (218)
|..+...++++.|+..-..|=-.=.+|...-=+|+--.--++ +|.+.+...-|..+|..|-...++-|.+.|+
T Consensus 65 F~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l----- 139 (357)
T PLN02508 65 FKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNL----- 139 (357)
T ss_pred hccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCc-----
Confidence 434444588888888888888888999999999988777675 5899999999999999999999999999985
Q ss_pred hhhHHHHHHHHHHHhh-----hcCchhhhHHHHHHHH-------HHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHh
Q psy9570 91 LPFWNVAGFILGAGSA-----LLGPKGAMACTVAVES-------VIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQE 158 (218)
Q Consensus 91 ~PlW~~~gf~LGa~ta-----l~G~~~~~a~t~aVE~-------~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~e 158 (218)
+.=||.+|. .+-+|+++-.|-=-|+ .|-+|++.| |+. .--.|-.-.+.-+.||-.
T Consensus 140 -------~lDLgfLtk~rkYTfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~----Pe~--r~~PIFk~Fe~WCqDEnR 206 (357)
T PLN02508 140 -------ALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLQAN----PDY--QLYPIFKYFENWCQDENR 206 (357)
T ss_pred -------cccchhhcccCceeeeCcceeehhhHhhhhhhhhhHhHHHHHHHhC----ccc--ccchHHHHHHHHhcccch
Confidence 455676664 4566777666665555 344555443 221 345677888999999999
Q ss_pred HHHh
Q psy9570 159 HHDT 162 (218)
Q Consensus 159 H~d~ 162 (218)
|.|.
T Consensus 207 HGd~ 210 (357)
T PLN02508 207 HGDF 210 (357)
T ss_pred hHHH
Confidence 9985
No 67
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=73.30 E-value=33 Score=31.45 Aligned_cols=127 Identities=17% Similarity=0.105 Sum_probs=76.8
Q ss_pred hchhHHHHHHHHHHHHHhhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcc-------hhhH----------H
Q psy9570 35 DHAGELGADRIYAGQMAVLGNSSV-APKIQEMWDQEKAHKAKFEELIRKYRVR-PTAL-------LPFW----------N 95 (218)
Q Consensus 35 dHAGE~gA~~IY~GQ~~v~~~~~~-~~~l~~~~~~E~~Hl~~f~~~l~~~~~R-pS~L-------~PlW----------~ 95 (218)
-.-||+.|--=|--|.+.++++.. +..|.....+|.-|+.-....+..+--- |.-. .|+. +
T Consensus 31 G~~GElsaamqYl~Q~~~~~~~~~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h 110 (283)
T PF05067_consen 31 GPFGELSAAMQYLFQSFNMRGPEKYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQH 110 (283)
T ss_dssp STTSHHHHHHHHHHHHHH-SSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHH
T ss_pred CCcchHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchh
Confidence 356999999999999999998865 9999999999999999999888665321 2111 1211 1
Q ss_pred HHHHHHHH-HhhhcCchhhhHHHHHHHHHHHHHHHHHH---------HHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 96 VAGFILGA-GSALLGPKGAMACTVAVESVIVDHYNEQL---------RALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 96 ~~gf~LGa-~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql---------~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
...-++|+ .+...|..|+.+.+.+.-..|.+=+.+=- ..|.+. .+++.++++|.=++.-|.-|...
T Consensus 111 ~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~m-TdDpgvkd~L~FLl~Re~vH~~~ 186 (283)
T PF05067_consen 111 YIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEM-TDDPGVKDMLSFLLAREIVHQQQ 186 (283)
T ss_dssp HHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHH
Confidence 11112222 34567888998888776666644333211 111111 12478888899999999988754
No 68
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=73.08 E-value=9.6 Score=28.92 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=49.8
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
-+..+|...=+.|......|+.....+ +++.+..++.++.++|.+|..++++.|...
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777778889999999999999888 577889999999999999999999998764
No 69
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=72.54 E-value=3.9 Score=37.37 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=56.7
Q ss_pred cccccccccccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9570 5 TFRVNQQGFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR 84 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~ 84 (218)
+++++.+|.+=+..-. ...--+...||.|=+-|-.|--.|.=-.-+..+|.+++.|.-.+..|..|.+.|.+-|...+
T Consensus 118 ~~p~ds~G~PWt~~yv--~~sGdl~aDL~~NiaAE~~AR~~yerL~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~ 195 (283)
T PF05067_consen 118 AYPVDSNGVPWTAAYV--QASGDLIADLRSNIAAEQRARLQYERLYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEELQ 195 (283)
T ss_dssp --SB-TTS-B-BGGG------S-HHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCcccchhh--hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544333222 12334566799999999999999999988999999999999999999999999999998765
Q ss_pred CCCCcc
Q psy9570 85 VRPTAL 90 (218)
Q Consensus 85 ~RpS~L 90 (218)
..-+.+
T Consensus 196 ~~~~~~ 201 (283)
T PF05067_consen 196 ENFGKM 201 (283)
T ss_dssp HHHGGG
T ss_pred hhCCcc
Confidence 433333
No 70
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=71.34 E-value=12 Score=31.47 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRK 82 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~ 82 (218)
-+.+..++..|-++|+.|..-|+-=++++.+ .-.+..+.+.+.+|++|-.|.++.|.-
T Consensus 80 G~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~iL~deEEHid~LetqL~l 140 (157)
T COG2193 80 GETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEEILADEEEHIDWLETQLDL 140 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 3456789999999999999999998888763 445788888888888899999998753
No 71
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=71.02 E-value=4.9 Score=32.91 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=32.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHH
Q psy9570 110 PKGAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQ 157 (218)
Q Consensus 110 ~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~ 157 (218)
.++.++|-.++|..|.+||++- .|. ...+.++|++|=-|..
T Consensus 23 ~~aN~~Ck~aIE~aI~~~~~~~--~L~-----~~a~~~vie~fG~eR~ 63 (133)
T PF12960_consen 23 RKANIACKEAIEQAIREHFDGN--RLD-----PDAVKEVIEKFGYERV 63 (133)
T ss_pred HHhhHHHHHHHHHHHHHHcCCC--cCC-----HHHHHHHHHHHHHHHH
Confidence 8999999999999999999986 553 2455666888876654
No 72
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.89 E-value=39 Score=29.68 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHH
Q psy9570 66 WDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANREL 145 (218)
Q Consensus 66 ~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l 145 (218)
..+|.+|+..+....++.| .|-+.||+||++ +++|=++=-..-..==+.-+--|+.-+..+...+| +.
T Consensus 4 ~~~E~qql~~ik~wwkeNG--------k~li~gviLg~~-~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~---~~ 71 (207)
T COG2976 4 YLEEQQQLEAIKDWWKENG--------KALIVGVILGLG-GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP---KS 71 (207)
T ss_pred hhhHHHHHHHHHHHHHHCC--------chhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hh
Confidence 3589999999999999976 688899999865 56664443333333323556788888888877654 44
Q ss_pred HHHHHHHHHHH
Q psy9570 146 MDVIHKFRDEE 156 (218)
Q Consensus 146 ~~~i~~~rddE 156 (218)
...+++|.+.-
T Consensus 72 ~~~~ekf~~~n 82 (207)
T COG2976 72 IAAAEKFVQAN 82 (207)
T ss_pred HHHHHHHHhhc
Confidence 45577776654
No 73
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=70.70 E-value=22 Score=26.52 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCCCCC----cchhhHHHHHHHH-HHHh--hhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy9570 69 EKAHKAKFEELIRKYRVRPT----ALLPFWNVAGFIL-GAGS--ALLGPKGAMACTVAVESVIVDHYNEQLRALMSD 138 (218)
Q Consensus 69 E~~Hl~~f~~~l~~~~~RpS----~L~PlW~~~gf~L-Ga~t--al~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~ 138 (218)
|..|-..|++.|...|+-+. .-.+.|....+.= .... .--....++|+..++|..+-..|...++.|...
T Consensus 15 ~~~H~~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r~ 91 (106)
T PF14518_consen 15 ERSHPELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRRL 91 (106)
T ss_dssp GG-HHHHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHHc
Confidence 45799999999999998665 2223333222211 1111 223447889999999999999999888777543
No 74
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=69.84 E-value=18 Score=28.80 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=50.1
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
-+..+|+.+-.+|..+...|.-=..++. ++.+..++++++++|.+|..++++.+...
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l 139 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKL 139 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999998888764 66788999999999999999999999754
No 75
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=69.27 E-value=13 Score=39.33 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCc
Q psy9570 29 DEIIRVDHAGELGADRIYAGQMAVLGNSS-VAPKIQEMWDQEKAHKAKFEELIRKYR-VRPTA 89 (218)
Q Consensus 29 ~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~-~~~~l~~~~~~E~~Hl~~f~~~l~~~~-~RpS~ 89 (218)
..+||.--.-|--|..+|..-+....+++ .+..++++.++|+.|++.+.+++.++. .+|-+
T Consensus 943 ~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~~~~~~~ 1005 (1006)
T PRK12775 943 GNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREHVALLTTEFERWKQGKPGL 1005 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45778888889999999999998888875 589999999999999999999997653 34444
No 76
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=68.68 E-value=17 Score=30.73 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=48.2
Q ss_pred HhHHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9570 23 RVSRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 83 (218)
Q Consensus 23 ~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~ 83 (218)
.....|...|. +|.-+...|...+.-..++.++..++...++|..|+.++..++...
T Consensus 113 ~~~~~I~~a~~----~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 113 SYLEAIEAAME----AEKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 5999999999999999999999999999999999999999998775
No 77
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=63.18 E-value=6.2 Score=34.34 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHHHH
Q psy9570 39 ELGADRIYAGQMAVLGN--SSVAPKIQEMWDQEKAHKAKFEE 78 (218)
Q Consensus 39 E~gA~~IY~GQ~~v~~~--~~~~~~l~~~~~~E~~Hl~~f~~ 78 (218)
|.---.=|.||+..+.+ ..++..|.+|.++|.+|++.--.
T Consensus 135 E~vIe~Hy~~ql~~L~~~d~~lr~~l~qfR~DE~eH~d~Ai~ 176 (204)
T COG2941 135 ETVIEKHYDGQLRELPNLDAELRAILAQFRDDELEHLDNAIA 176 (204)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33334569999999874 46789999999999999986554
No 78
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=62.43 E-value=84 Score=25.58 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhcCchhhhHHHHH
Q psy9570 40 LGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSALLGPKGAMACTVA 119 (218)
Q Consensus 40 ~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal~G~~~~~a~t~a 119 (218)
+...+++.+=..+++++++++.++...+.=..|...+++.+.+.++ |-. +-|. -.=.---...++.|+-.+-++.-
T Consensus 30 ~~~~~~~~~f~~~~~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~i-p~P--~~~~-~~~v~~~~~~lfsD~~~l~~~~~ 105 (166)
T PF11553_consen 30 YMSICLLQYFLQVAEDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGI-PVP--PGFP-ESDVTDSAPPLFSDKFMLFYISF 105 (166)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------GGGS-G--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCC--CCCc-ccccCCCCCCCCCcHHHHHHHHH
Confidence 4566777777788899999999999999999999999999999987 222 2221 11122224556777777777776
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhHhcC
Q psy9570 120 VESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLEHG 167 (218)
Q Consensus 120 VE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~~g 167 (218)
.=..--..|..-+..-.. .+|+....+|-.++.+-.+...+.+
T Consensus 106 ~~~~~~~~~~~al~~s~R-----~Dl~~~f~~~~~~~~~~~~~~~~l~ 148 (166)
T PF11553_consen 106 MSQAGITNYGRALSSSVR-----NDLRAFFMKFLMEALELYDKIVKLM 148 (166)
T ss_dssp HHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655432 4577778888888888877765543
No 79
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=59.79 E-value=41 Score=29.01 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cchhhHH
Q psy9570 25 SRQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPT-ALLPFWN 95 (218)
Q Consensus 25 ~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS-~L~PlW~ 95 (218)
+.-+..++=+==-||++|-.-+.-=...+.+-.-+-.|-+|...|..|.+...+++.++|+-|. .+.|+-.
T Consensus 4 ~~~v~~llg~lAy~eL~aF~rLa~da~~AP~l~~r~ala~mAaae~~hf~~L~~~l~~~G~d~~~am~pf~~ 75 (185)
T PF13794_consen 4 RAAVVDLLGVLAYGELAAFERLAEDARMAPTLADRIALARMAAAEFGHFERLEARLAERGVDPEEAMEPFVG 75 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-SSSTTHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444555555556777765444444444444456778899999999999999999999999887 5566543
No 80
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=58.86 E-value=1e+02 Score=25.37 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=82.8
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcch-hhHH-HHHHHHHHHhh
Q psy9570 29 DEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALL-PFWN-VAGFILGAGSA 106 (218)
Q Consensus 29 ~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~-PlW~-~~gf~LGa~ta 106 (218)
-.-||=-|+.|--+...-.-+.....+|.++..++++..+=..|....++.+..+|..||-.- +.-. +.+-+-+++..
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~ 84 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAKAATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEE 84 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhc
Confidence 345677788888888888888888889999999999999999999999999999999999876 5432 22223333322
Q ss_pred hcCchhhhHHHHHHHHHHHHHHHHH----HHHhhCCCcccHHHHHHHHHHHHHHHh
Q psy9570 107 LLGPKGAMACTVAVESVIVDHYNEQ----LRALMSDPAANRELMDVIHKFRDEEQE 158 (218)
Q Consensus 107 l~G~~~~~a~t~aVE~~V~~Hy~~Q----l~~L~~~d~~~~~l~~~i~~~rddE~e 158 (218)
. ++....=..--.=-+..+||.=- |..+-.. ....+..+.+++.-+||..
T Consensus 85 ~-~~~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~-lG~~e~a~lL~~~L~EE~~ 138 (147)
T cd07909 85 T-GDSAVLDAALIAAAQKVEHYEIAGYGTLRALAKL-LGLDDAADLLQETLDEEKA 138 (147)
T ss_pred c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHH
Confidence 2 22222222211334556777632 1111100 0124555668888888753
No 81
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.99 E-value=57 Score=26.84 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCchhhhHHHHHHHHH---HHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhh
Q psy9570 96 VAGFILGAGSALLGPKGAMACTVAVESV---IVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 96 ~~gf~LGa~tal~G~~~~~a~t~aVE~~---V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A 163 (218)
+.|.++|++.+-++++..-- -..++.. +-..+++|=++|..+-.++.+|.++|.+=-.+=.+|....
T Consensus 16 vvGi~IG~li~Rlt~~~~k~-q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~s 85 (138)
T COG3105 16 VVGIIIGALIARLTNRKLKQ-QQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAKS 85 (138)
T ss_pred HHHHHHHHHHHHHcchhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777788888887765432 1123322 3455666667776655577889888877777777887554
No 82
>PRK15022 ferritin-like protein; Provisional
Probab=54.06 E-value=41 Score=28.29 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy9570 38 GELGADRIYAGQMAVLGN---SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL 90 (218)
Q Consensus 38 GE~gA~~IY~GQ~~v~~~---~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L 90 (218)
-|+-|-.+|-.=...+.+ |....++....++|.+|-..|-+.+.++|.|+.+-
T Consensus 16 ~E~~aSy~YLsMa~~~~~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~ 71 (167)
T PRK15022 16 LEFYASNLYLHLSEWCSEQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVK 71 (167)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeC
Confidence 478888899888777753 56678899999999999999999999999998763
No 83
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=52.88 E-value=8.4 Score=31.97 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=33.9
Q ss_pred CcchhhHHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHH
Q psy9570 88 TALLPFWNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQL 132 (218)
Q Consensus 88 S~L~PlW~~~gf~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql 132 (218)
|+++|+-.+..|.+|-+--+---..-...-+.+..+|.+.||+++
T Consensus 74 sllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~q~~~q~~~~~ 118 (164)
T PF10624_consen 74 SLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQSQVNEQYDEDL 118 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHHHHhhhcCccc
Confidence 789999999999999876654433344556777888888888776
No 84
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=50.39 E-value=65 Score=28.29 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhH
Q psy9570 39 ELGADRIYAGQMAVLGNS---SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFW 94 (218)
Q Consensus 39 E~gA~~IY~GQ~~v~~~~---~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW 94 (218)
|++-.-.|=--+.-+++. ..+..|+...-+|.-|+.+...++...|.+|.+-.|-|
T Consensus 8 E~atip~YL~a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~~~~~ 66 (227)
T PF12902_consen 8 ELATIPPYLTALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLTSPDF 66 (227)
T ss_dssp HHHHHHHHHHHHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccccC
Confidence 445555554444444532 46789999999999999999999999999999987766
No 85
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=49.00 E-value=46 Score=26.00 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=46.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVL---GNSSVAPKIQEMWDQEKAHKAKFEEL 79 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~---~~~~~~~~l~~~~~~E~~Hl~~f~~~ 79 (218)
.....+++.+-.-|..+...|+.-+..+ +++...+.+.+...++.+|+-++++.
T Consensus 82 ~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a~ 138 (139)
T cd01043 82 LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLTEIIRELEKQAWMLRAH 138 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467889999999999999999998886 46778899999999999999888764
No 86
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=45.70 E-value=47 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEEL 79 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~ 79 (218)
.-....+|+-=..|.--+..|.-=+.-..+++++..+....+.|..|+.-|-.+
T Consensus 81 ~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 81 KSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888889999999999988888889999999999999999999988765
No 87
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=44.20 E-value=3.2e+02 Score=26.74 Aligned_cols=120 Identities=15% Similarity=0.037 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C----C----cchhhHHHHHHHHH-HH
Q psy9570 38 GELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVR-P----T----ALLPFWNVAGFILG-AG 104 (218)
Q Consensus 38 GE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~R-p----S----~L~PlW~~~gf~LG-a~ 104 (218)
+|+||+.=. +.+.+ .+.++.-+.-..-.|.+|.+..--+...+.-. | + .-.|.|...-=++. +.
T Consensus 89 ~Ey~a~~~~---a~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~~~R~~~ed~~ 165 (465)
T cd01057 89 GEYAAVRGM---AMLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAGAAKRFFFDGF 165 (465)
T ss_pred HHHHHHHHH---HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHHHHHHHHHHHH
Confidence 677776432 22222 33355555555567888877665555333211 1 0 14678877755554 32
Q ss_pred hhhcCc--hhhhHHHHHHHHHHHHHHHHHHHHhhCC--CcccHHHHHHHHHHHHHHHhHHHhhHh
Q psy9570 105 SALLGP--KGAMACTVAVESVIVDHYNEQLRALMSD--PAANRELMDVIHKFRDEEQEHHDTGLE 165 (218)
Q Consensus 105 tal~G~--~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~--d~~~~~l~~~i~~~rddE~eH~d~A~~ 165 (218)
. .++ +++.+++..+|..++.=+-..+.++-.. |...+.+ +-+...||..|...+.+
T Consensus 166 ~--t~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv---~~S~QsDe~Rh~~~g~~ 225 (465)
T cd01057 166 I--TGDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTV---FLSIQSDEARHMANGYP 225 (465)
T ss_pred h--cCCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHH---HHHHHHHHHHHHHhHHH
Confidence 3 244 7889999999999988888777666432 3233444 78888999999987744
No 88
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=44.15 E-value=92 Score=21.44 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9570 38 GELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRV 85 (218)
Q Consensus 38 GE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~ 85 (218)
.+-.+...|.-=+.-..+|.+|..+..++.++.++...+-+++.++|-
T Consensus 12 ~~K~~~~~y~~a~~E~~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 12 SEKAAARNYATAALECANPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445556666665666679999999999999999999998899988874
No 89
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=43.71 E-value=18 Score=33.04 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=49.3
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9570 29 DEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYR 84 (218)
Q Consensus 29 ~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~ 84 (218)
-.-+|.|-+-|.+|--.|.==..+..+|.+++.|..++..|.-|...|.+-|...+
T Consensus 135 iaDlr~NiaaE~~aR~~y~rLy~mtdDpgvrd~L~fLl~Re~~H~~~f~kAL~~l~ 190 (277)
T COG3546 135 IADLRSNIAAEARARLQYERLYEMTDDPGVRDTLSFLLTREIAHQNAFRKALESLE 190 (277)
T ss_pred HHHHHHHHHHHhccceeeeeeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999888877777788999999999999999999999999997654
No 90
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=40.81 E-value=57 Score=29.15 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhCCCcccHHHH-HHHHHHHHHHHhHHHhh
Q psy9570 124 IVDHYNEQLRALMSDPAANRELM-DVIHKFRDEEQEHHDTG 163 (218)
Q Consensus 124 V~~Hy~~Ql~~L~~~d~~~~~l~-~~i~~~rddE~eH~d~A 163 (218)
+.+|+..|-+-|-.-+ +++++ ++|..|++||.|--+.|
T Consensus 133 LLRhLRHHSNLLAnIg--dP~VreqVLsAMqEeeeEEe~DA 171 (238)
T PF02084_consen 133 LLRHLRHHSNLLANIG--DPEVREQVLSAMQEEEEEEEQDA 171 (238)
T ss_pred HHHHHHHHHHHHhhcC--CHHHHHHHHHHHhhhHHHHHHHH
Confidence 4689999987665432 34554 45788998877665544
No 91
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.51 E-value=71 Score=29.51 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy9570 94 WNVAGFILGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDP 139 (218)
Q Consensus 94 W~~~gf~LGa~tal~G~~~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d 139 (218)
..+.|.+||+.++.-| ..+.-||.+....+..+.++|-..+
T Consensus 130 LsaaG~GlgaaagvT~-----i~t~I~e~~~~~~~~~~a~~l~~~~ 170 (313)
T PF05461_consen 130 LSAAGIGLGAAAGVTS-----ISTSIVEHVSNKSARKEASELISTD 170 (313)
T ss_pred HHHhhhHHHHHhhhhH-----HHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 4445555555444443 2445577777778888888776544
No 92
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=37.21 E-value=68 Score=26.17 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=39.5
Q ss_pred CCCccccccc-ccccccccCChHhHHHHHHHHhhhchhHHHHHHHHHHHHHhh
Q psy9570 2 LSSTFRVNQQ-GFRLVRNLHQKRVSRQLDEIIRVDHAGELGADRIYAGQMAVL 53 (218)
Q Consensus 2 ~~~~~~~~~~-~~~~~~~~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~v~ 53 (218)
-|+.|..+.| .-.-+..-||+.-++.|.+||+-...+===|-.||.=|.+.-
T Consensus 63 sSs~FDl~~Ni~~~D~R~GLD~~ak~EI~~IM~~~~v~FDeARliy~~~~f~~ 115 (128)
T PF09435_consen 63 SSSNFDLSSNINSGDSRAGLDDAAKREIRRIMKRRRVNFDEARLIYTERRFKK 115 (128)
T ss_pred cccccChhhcccCCCcccCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3778888887 444555569999999999999988777666777777776643
No 93
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=35.07 E-value=82 Score=27.12 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=37.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHH
Q psy9570 56 SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFI 100 (218)
Q Consensus 56 ~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~ 100 (218)
+++...|.....+|..|....-+.|.++|+.-..+.|-=|+.|..
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~ 92 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLR 92 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 466677778889999999999999999999777777777777663
No 94
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=33.37 E-value=3.4e+02 Score=23.99 Aligned_cols=143 Identities=14% Similarity=0.046 Sum_probs=85.2
Q ss_pred cCChHhHHHHHHHHhhhchhHHHHHHHHHHHHH---hhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---Ccchh
Q psy9570 19 LHQKRVSRQLDEIIRVDHAGELGADRIYAGQMA---VLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRP---TALLP 92 (218)
Q Consensus 19 ~l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ~~---v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~Rp---S~L~P 92 (218)
.|++.+|..+.+++.-=-+||.....-+-.... ...+++.+..+..+..+|..|-..+...+...+..+ ....+
T Consensus 38 ~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~ 117 (280)
T cd07911 38 QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTA 117 (280)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhh
Confidence 589999999999999988999644433333332 224566788899999999999999999999887644 33444
Q ss_pred hHHHHHHH-HHH-HhhhcCc----hh---hhHHHHHHHHHHHHHHHHH--HH-HhhCCCcccHHHHHHHHHHHHHHHhHH
Q psy9570 93 FWNVAGFI-LGA-GSALLGP----KG---AMACTVAVESVIVDHYNEQ--LR-ALMSDPAANRELMDVIHKFRDEEQEHH 160 (218)
Q Consensus 93 lW~~~gf~-LGa-~tal~G~----~~---~~a~t~aVE~~V~~Hy~~Q--l~-~L~~~d~~~~~l~~~i~~~rddE~eH~ 160 (218)
.|....+- +.. ...+.-+ +. ++.+...+|-.. -|... +. -|...+ .-+.+.+.|+-+.-||..|-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGil--f~sgF~~~~~~l~~~g-~m~g~~~~i~~I~RDE~~H~ 194 (280)
T cd07911 118 VYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVL--AETGYYAWRTICEKRG-ILPGMQEGIRRLGDDESRHI 194 (280)
T ss_pred HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcC-CCcCHHHHHHHHHHHHHHHH
Confidence 44444321 100 1111111 11 111122344432 12222 11 122221 34556777999999999999
Q ss_pred HhhH
Q psy9570 161 DTGL 164 (218)
Q Consensus 161 d~A~ 164 (218)
.-+.
T Consensus 195 ~fg~ 198 (280)
T cd07911 195 AWGT 198 (280)
T ss_pred HHHH
Confidence 8773
No 95
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=29.55 E-value=2e+02 Score=24.51 Aligned_cols=80 Identities=21% Similarity=0.162 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhh----cCch
Q psy9570 39 ELGADRIYAGQMAVLG---NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL----LGPK 111 (218)
Q Consensus 39 E~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~tal----~G~~ 111 (218)
|+=|-.+|-.=.+.+. -+....++...+.+|..|-..|-+-+.+++.||-+ |++.+. -+.+
T Consensus 17 E~yas~lYl~maa~~~~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l------------~~I~~P~~~~~s~~ 84 (167)
T COG1528 17 EFYASNLYLQMAAWCSSESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPEL------------KAIEAPPNKFSSLK 84 (167)
T ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee------------cCcCCCccccCCHH
Confidence 6667778877777765 35678999999999999999999999999999864 222221 1223
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy9570 112 GAMACTVAVESVIVDHYNE 130 (218)
Q Consensus 112 ~~~a~t~aVE~~V~~Hy~~ 130 (218)
-.+--|-..|..|..+.++
T Consensus 85 e~f~~tlehEq~vt~~I~~ 103 (167)
T COG1528 85 ELFEKTLEHEQKVTSSINE 103 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665544
No 96
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.17 E-value=2.3e+02 Score=20.62 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHh-cCCCCCcchhhHHHHHHHHHHHhhhcC
Q psy9570 76 FEELIRK-YRVRPTALLPFWNVAGFILGAGSALLG 109 (218)
Q Consensus 76 f~~~l~~-~~~RpS~L~PlW~~~gf~LGa~tal~G 109 (218)
|.+.+.. ...||+.-.++|.+..+++|.+.=..|
T Consensus 25 fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G 59 (82)
T PF11239_consen 25 FAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAG 59 (82)
T ss_pred HHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3344433 345666666788888888886544444
No 97
>PF05163 DinB: DinB family; InterPro: IPR007837 This entry represents the DinB family, and includes DinB from Bacillus subtilis. DNA damage-inducible genes (dinA, dinB, and dinC) in Bacillus subtilis are coordinately regulated and together compose a global regulatory network that has been termed the SOS-like or SOB regulon [].; PDB: 3DKA_A 2QE9_A 3GOR_D 3DI5_A 2F22_A.
Probab=29.13 E-value=80 Score=24.75 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhH
Q psy9570 57 SVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFW 94 (218)
Q Consensus 57 ~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW 94 (218)
.....|.++..++..|...+-.+|.+.|+.|-.+.=++
T Consensus 121 ~~~~~L~h~~~H~~hHRGQi~~~Lr~~G~~pp~~d~~~ 158 (168)
T PF05163_consen 121 SRAEILQHVINHETHHRGQISVLLRQLGIEPPSTDYIF 158 (168)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHTT------SS--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHH
Confidence 45688999999999999999999999999886554333
No 98
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=28.99 E-value=1.1e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy9570 36 HAGELGADRIYAGQMAVL-GNSSVAPKIQEMWDQEKAHKAKFEEL 79 (218)
Q Consensus 36 HAGE~gA~~IY~GQ~~v~-~~~~~~~~l~~~~~~E~~Hl~~f~~~ 79 (218)
.-||-.++.-|+--+.-- -.++++..+++.+..++.|+.|+..+
T Consensus 94 e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~l 138 (139)
T TIGR02284 94 ERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRAL 138 (139)
T ss_pred HHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347777888887666543 24577788888888888888887653
No 99
>PRK10304 ferritin; Provisional
Probab=28.44 E-value=2.3e+02 Score=23.47 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=48.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHHHHHH---HHHHHHHHHHHHHhcC
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQEMWDQ---EKAHKAKFEELIRKYR 84 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~~~~~---E~~Hl~~f~~~l~~~~ 84 (218)
.-+..++..+-+-|..+..-|.-=..++. +.....+++++.++ |..|..|..+.+...+
T Consensus 81 ~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 81 SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34678888899999988888877766654 56778999999998 9999999999998775
No 100
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.07 E-value=2.3e+02 Score=20.03 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhc
Q psy9570 95 NVAGFILGAGSALL 108 (218)
Q Consensus 95 ~~~gf~LGa~tal~ 108 (218)
-+.|.++|++++++
T Consensus 5 ~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 5 FLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666777777766
No 101
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=26.21 E-value=5.4e+02 Score=24.01 Aligned_cols=143 Identities=10% Similarity=0.112 Sum_probs=88.7
Q ss_pred cCChHhHHHHHHHHhhhchhHH-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHH-
Q psy9570 19 LHQKRVSRQLDEIIRVDHAGEL-GADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNV- 96 (218)
Q Consensus 19 ~l~~~~~~~i~r~lRVdHAGE~-gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW~~- 96 (218)
.|++.+|..+.+++.-==++|. -+..|...-......|.++..+.....+|.-|-..+.-++..++.-|..+...|.-
T Consensus 90 ~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e~f~~~~~~ 169 (369)
T PRK07209 90 GLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEV 169 (369)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 5999999999999998667775 33444445555666788889999999999999999999999998767654444321
Q ss_pred ------HHHHHHHHhhhcC----------c-hhhhHHH---HHHHHHHHHHHHHH--HHHhhCCCcccHHHHHHHHHHHH
Q psy9570 97 ------AGFILGAGSALLG----------P-KGAMACT---VAVESVIVDHYNEQ--LRALMSDPAANRELMDVIHKFRD 154 (218)
Q Consensus 97 ------~gf~LGa~tal~G----------~-~~~~a~t---~aVE~~V~~Hy~~Q--l~~L~~~d~~~~~l~~~i~~~rd 154 (218)
.-|+....-.+.. + +...+++ .-+|-..- |... +--|...+ .-+.+...|+-+.-
T Consensus 170 p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~ilEGi~F--ysgFa~~~~l~r~g-~M~G~~~~i~~I~R 246 (369)
T PRK07209 170 PSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYCIMEGIFF--YVGFTQILSLGRQN-KMTGIAEQYQYILR 246 (369)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhcC-CcccHHHHHHHHHH
Confidence 1222222211110 1 1111121 12344332 2222 22233332 34556677999999
Q ss_pred HHHhHHHhhH
Q psy9570 155 EEQEHHDTGL 164 (218)
Q Consensus 155 dE~eH~d~A~ 164 (218)
||.-|..-+.
T Consensus 247 DE~~H~~f~~ 256 (369)
T PRK07209 247 DESMHLNFGI 256 (369)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 102
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=26.21 E-value=2.1e+02 Score=23.12 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=46.1
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHhhC---CCCcHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q psy9570 26 RQLDEIIRVDHAGELGADRIYAGQMAVLG---NSSVAPKIQE-MWDQEKAHKAKFEELIRKYR 84 (218)
Q Consensus 26 ~~i~r~lRVdHAGE~gA~~IY~GQ~~v~~---~~~~~~~l~~-~~~~E~~Hl~~f~~~l~~~~ 84 (218)
.-+..++..+-+=|.-+..-|.--...+. +.....+++. +.+++.+|.+++...+.+.+
T Consensus 82 ~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~ 144 (161)
T cd01056 82 GSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLK 144 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34667788888888777766666555553 5678899998 99999999999999987764
No 103
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=25.92 E-value=2.6e+02 Score=22.22 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=28.4
Q ss_pred CCcchhhHH--HHHHHHHHHhhhcCchhhhHHHHHHHHHH
Q psy9570 87 PTALLPFWN--VAGFILGAGSALLGPKGAMACTVAVESVI 124 (218)
Q Consensus 87 pS~L~PlW~--~~gf~LGa~tal~G~~~~~a~t~aVE~~V 124 (218)
||.=+-+-+ .+|+++|+++-+++.+...+|.-+|=..+
T Consensus 38 PCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~ 77 (118)
T PF12597_consen 38 PCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFF 77 (118)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHH
Confidence 554444443 57899999999999988788877777766
No 104
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=23.75 E-value=3.1e+02 Score=24.16 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=84.1
Q ss_pred CChHhHHHHHHHHhhhchhHHHHHHHHHHH-HHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhH----
Q psy9570 20 HQKRVSRQLDEIIRVDHAGELGADRIYAGQ-MAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFW---- 94 (218)
Q Consensus 20 l~~~~~~~i~r~lRVdHAGE~gA~~IY~GQ-~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L~PlW---- 94 (218)
||+.+|..+.+++..==.||.....-+-.. ...+..|..+..+.....+|..|-..+...+...+-.|.-..-+.
T Consensus 48 Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~ 127 (281)
T PF00268_consen 48 LSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVE 127 (281)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 899999999999999999997555544333 345678888899999999999999999999988863222111111
Q ss_pred ------HHHHHHHHHHhh--hcCch-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhH
Q psy9570 95 ------NVAGFILGAGSA--LLGPK-GAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGL 164 (218)
Q Consensus 95 ------~~~gf~LGa~ta--l~G~~-~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~ 164 (218)
.-.-|+...... -+.++ .++.|++++=-. +..+- +-.|...+ .-+.+.+.++.+.-||.-|..-+.
T Consensus 128 ~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~-s~F~~--~~~l~~~g-~m~g~~~~i~~I~RDE~~H~~~~~ 202 (281)
T PF00268_consen 128 EDPELQKKLDWIEKWYEDNDSLAEKLVASVILEGILFY-SGFAY--ILYLARQG-KMPGLAEIIKLIMRDESLHVEFGI 202 (281)
T ss_dssp HSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTTTH-HHHHH--HHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHHHHHHhhchhhhhHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHcC-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 112233332221 01122 122222222111 11110 11222222 356677889999999999998774
No 105
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.55 E-value=85 Score=21.28 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9570 55 NSSVAPKIQEMWDQEKAHKAKFEELIRKYRVR 86 (218)
Q Consensus 55 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~R 86 (218)
.|.....|-.|.+.|..|....++...+...|
T Consensus 13 ~Pg~aerI~~mae~eq~hR~~~e~~~l~~~~~ 44 (50)
T PF10097_consen 13 LPGAAERIFAMAEKEQEHRHELEKKALKSEIR 44 (50)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999888665444
No 106
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=23.38 E-value=2e+02 Score=26.54 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9570 39 ELGADRIYAGQMAVL--GNSSVAPKIQEMWDQEKAHKAKFEELIRK 82 (218)
Q Consensus 39 E~gA~~IY~GQ~~v~--~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~ 82 (218)
|.|.+--|+-=.... ++|.++..+.....+|..|...|.+.+..
T Consensus 159 E~aT~v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~ 204 (297)
T cd01050 159 ELATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEA 204 (297)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444344456 67888899999999999999999999865
No 107
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=22.04 E-value=52 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHHHhhhcCchh
Q psy9570 89 ALLPFWNVAGFILGAGSALLGPKG 112 (218)
Q Consensus 89 ~L~PlW~~~gf~LGa~tal~G~~~ 112 (218)
-+.||+-+.|+++|..+..+.+.+
T Consensus 5 el~PL~~~vg~a~~~a~~~~~r~l 28 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATFYLYRLL 28 (73)
T ss_pred cccchHHHHHHHHHHHHHHHHHHH
Confidence 358999999999998887766544
No 108
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=21.85 E-value=3.5e+02 Score=26.23 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh-----hHhcCCCcCchHHHHHHHHHHHHHHHHHhcc
Q psy9570 119 AVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT-----GLEHGAEQAPFYKLMTDVIKVGCKVAIEHGA 193 (218)
Q Consensus 119 aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~-----A~~~ga~~ap~~~~l~~~ik~~t~~AI~~~a 193 (218)
.-|..|...| ++.......|...+-.+.|++.+.|-.++... -++|-++ .+.-.-|-.+|-++.=+..-.++
T Consensus 286 ~~~~~i~~ly--~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK-~~~e~~lEkIiAf~aL~~M~FD~ 362 (445)
T PF13608_consen 286 KEEDEIEHLY--MLCKKHGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAK-TASEKNLEKIIAFVALLMMMFDA 362 (445)
T ss_pred HHHHHHHHHH--HHHHHhCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCC-ChHHHHHHHHHHHHHHHHHHhCc
Confidence 3455566666 55555556677778888888888888888763 2344442 45556666777788777888877
Q ss_pred cCCc-chHHHHHH
Q psy9570 194 EQAP-FYKLMTDV 205 (218)
Q Consensus 194 e~a~-~y~~l~~~ 205 (218)
|++- -|++|+.+
T Consensus 363 ERSD~VyKiLnKl 375 (445)
T PF13608_consen 363 ERSDCVYKILNKL 375 (445)
T ss_pred hhhHHHHHHHHHH
Confidence 7664 48888765
No 109
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=21.80 E-value=6.1e+02 Score=23.07 Aligned_cols=107 Identities=8% Similarity=-0.009 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC----------cchhhHHHHHHHHH-HHhhhcCc--hhhhHHHHHHH
Q psy9570 56 SSVAPKIQEMWDQEKAHKAKFEELIRKYRVR-PT----------ALLPFWNVAGFILG-AGSALLGP--KGAMACTVAVE 121 (218)
Q Consensus 56 ~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~R-pS----------~L~PlW~~~gf~LG-a~tal~G~--~~~~a~t~aVE 121 (218)
+.++.-+.-..-.|.+|.+...-+-..+..- |. .-.|.|...==.+. .+.. ++ ++..+..-.+|
T Consensus 129 ~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp~Wq~~R~~~E~~~~~--~Dw~E~~va~nlv~e 206 (304)
T cd01058 129 TTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVT--YDWGEAFVAQNLVFD 206 (304)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCchhHHHHHHHHHHHhh--ccHHHHHHHHHHHHH
Confidence 3445555555677888888776444333321 33 47899996533332 3333 44 77888899999
Q ss_pred HHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHhhHh
Q psy9570 122 SVIVDHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDTGLE 165 (218)
Q Consensus 122 ~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~A~~ 165 (218)
..+..=.-.++.++-... .+..+--.+..+..||.+|..-+.+
T Consensus 207 ~l~~~l~~~~~~~~Aa~n-GD~~t~~l~~s~q~d~~Rh~~~~~a 249 (304)
T cd01058 207 PLVGELVRRELDRLAASN-GDTLTPLLTEFMLDDAQRHRRWTDA 249 (304)
T ss_pred HHHHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 988877777776664321 1122333489999999999987643
No 110
>PF12713 DUF3806: Domain of unknown function (DUF3806); InterPro: IPR024266 This entry represents a domain found at the C terminus of a family of bacterial proteins, whose function is unknown. In two related Bacteroides species the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7, whose C-terminal domain is a phage integrase.; PDB: 3HLZ_A.
Probab=21.45 E-value=1.4e+02 Score=22.12 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH-hhhc
Q psy9570 73 KAKFEELIRKYRVRPTALLPFWNVAGFILGAG-SALL 108 (218)
Q Consensus 73 l~~f~~~l~~~~~RpS~L~PlW~~~gf~LGa~-tal~ 108 (218)
+..+++.+.+..+.|.=..+ |...|++||-+ ..-+
T Consensus 3 l~~lq~~id~~~~~~~d~~~-~~alGialG~~L~~e~ 38 (87)
T PF12713_consen 3 LEKLQRVIDSGEISPDDKDE-WQALGIALGDLLANEV 38 (87)
T ss_dssp HHHHHHHHHTT-S-TT-HHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcHHH-HHHHHHHHHHHHHhhc
Confidence 45677888787888888888 99999999953 4434
No 111
>cd04778 HTH_MerR-like_sg2 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.33 E-value=2.9e+02 Score=24.08 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHH
Q psy9570 112 GAMACTVAVESVIVDHYNEQLRALMSDPAANRELMDVIHKFRDE 155 (218)
Q Consensus 112 ~~~a~t~aVE~~V~~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rdd 155 (218)
.+-.....+++.+..|+-++....+..+.+..++.+.+.+||.=
T Consensus 163 ~ad~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~rpl 206 (219)
T cd04778 163 HADDVAERFVDAVGERIHAREGGLLPRPADVDEIAQVVQRYRPL 206 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHH
Confidence 33444455666667777666655333322456677777777753
No 112
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=21.02 E-value=68 Score=21.99 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhcCchh
Q psy9570 94 WNVAGFILGAGSALLGPKG 112 (218)
Q Consensus 94 W~~~gf~LGa~tal~G~~~ 112 (218)
|...|++-|+++.++|++.
T Consensus 23 ~~~~G~~~G~~~~~~~~~~ 41 (62)
T PF02830_consen 23 WFTAGYLAGFFSALFGKEV 41 (62)
T ss_dssp HHHHHHHHHHHHHHHSSEE
T ss_pred HHHHHHHHHHHHHHhCCce
Confidence 6789999999999999874
No 113
>PRK11677 hypothetical protein; Provisional
Probab=20.76 E-value=3.8e+02 Score=21.85 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhhhcCchhhhH---HHHHHHHHHH------HHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHhHHHh
Q psy9570 92 PFWNVAGFILGAGSALLGPKGAMA---CTVAVESVIV------DHYNEQLRALMSDPAANRELMDVIHKFRDEEQEHHDT 162 (218)
Q Consensus 92 PlW~~~gf~LGa~tal~G~~~~~a---~t~aVE~~V~------~Hy~~Ql~~L~~~d~~~~~l~~~i~~~rddE~eH~d~ 162 (218)
|+.-+.||++|++.|.+.-+..-. -...+|+.++ +.|++++ .++-..+.+|.+.|.+=-.+=.+|...
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV---~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQEL---VSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777776655554433221 1222333332 1233333 222224567755565555555666633
No 114
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=3.1e+02 Score=23.36 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=48.1
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy9570 27 QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTAL 90 (218)
Q Consensus 27 ~i~r~lRVdHAGE~gA~~IY~GQ~~v~~~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~L 90 (218)
+.---||=-|+-|--+-..-.-++.-+.+|.++..++.++++-++|....++-+...|.+|...
T Consensus 9 ~f~~~LrD~y~aEkq~~kaL~kma~~~~~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~~~ 72 (167)
T COG3685 9 LFIDTLRDIYAAEKQILKALPKMARRAQYPELKAAIEKHLEETKGQIERLEQVFERLGKKARRV 72 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 3344567777777665555555555556889999999999999999999999998877666543
No 115
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=20.35 E-value=1.3e+02 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=27.1
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHH------HhcCCCCC
Q psy9570 53 LGNSSVAPKIQEMWDQEKAHKAKFEELI------RKYRVRPT 88 (218)
Q Consensus 53 ~~~~~~~~~l~~~~~~E~~Hl~~f~~~l------~~~~~RpS 88 (218)
+.-|.+++-++. |++|.+--+||-+.| .++|.||-
T Consensus 269 ASfP~V~eRVkr-WdeEv~kaR~fv~elEkigg~~qlG~rPk 309 (382)
T COG1103 269 ASFPHVVERVKR-WDEEVEKARWFVAELEKIGGVKQLGERPK 309 (382)
T ss_pred hcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHhCCCCc
Confidence 445667666666 999999999999987 45667774
Done!