RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9570
         (218 letters)



>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 158

 Score = 82.7 bits (203), Expect = 9e-21
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 27  QLDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKYRVR 86
            L+E++ +    E+GA   Y      +   ++  KI  + ++EK H+A   +L  +    
Sbjct: 11  SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPG 70

Query: 87  PTALLPFWNVAGFI---LGAGSALLGPKGAMACTVAVESVIVDHYNEQLRALMSDPAANR 143
              + P  ++   +         +      +   +  E +  + Y +     + +     
Sbjct: 71  KEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLK-----LEEMVKEE 125

Query: 144 ELMDVIHKFRDEEQEHHDT 162
           E   ++    D E+ H+ T
Sbjct: 126 EKKRLMRYLADMERGHYYT 144


>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284
           homologue {Magnetospirillum magnetotacticum ms-1 [TaxId:
           272627]}
          Length = 152

 Score = 28.7 bits (63), Expect = 0.29
 Identities = 9/56 (16%), Positives = 16/56 (28%)

Query: 28  LDEIIRVDHAGELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRKY 83
               +R     E+     Y    A   +  V     +   +E  H    ++ I K 
Sbjct: 91  PYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKT 146


>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea
           batatas) [TaxId: 4120]}
          Length = 341

 Score = 26.7 bits (58), Expect = 2.6
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 46  YAGQMAVLGNSSVAPKIQEMWDQEKAHK---AKFEELIRKYRVRPTALLPFWN 95
             G    +       ++   W     H+     +E ++ K    P+  LPFWN
Sbjct: 92  CNGGYDQVNFPDQEIQVHNSWLFFPFHRWYLYFYERILGKLIGDPSFGLPFWN 144


>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
          (IleRS) {Thermus thermophilus [TaxId: 274]}
          Length = 452

 Score = 26.1 bits (56), Expect = 4.4
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 58 VAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAG 98
          +  ++   W +EK  +   E   RK   R T         G
Sbjct: 13 LEEEVLAFWKREKIFQKSVEN--RKGGPRYTVYEGPPTANG 51


>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 152

 Score = 24.9 bits (54), Expect = 5.9
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 38  GELGADRIYAGQMAVLGNSSVAPKIQEMWDQEKAHKAKFEELIRK 82
           GE G + +  G  A LG +       ++ D+E        +++R+
Sbjct: 101 GEYGIENVAVGVPAKLGKNGAEVADIKLSDEEIEKLRNSAKILRE 145


>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score = 25.0 bits (54), Expect = 7.0
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 131 QLRALMSDPAANRELMD-VIHKFRDEEQEHHDTGLEHGAE 169
           +L   +  P    +    ++ KF  EE+   DT LE G +
Sbjct: 131 RLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVD 170


>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 494

 Score = 24.9 bits (53), Expect = 8.4
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 56  SSVAPKIQEMWDQEKAHKAKFEELIRKYRVRPTALLPFWNVAGFILGAGSAL 107
            ++  K Q  W+++   KAK        R +   L+ F   +G  L  G   
Sbjct: 7   HAIEAKWQRFWEEKGFMKAKDL---PGGRGKQYVLVMFPYPSG-DLHMGHLK 54


>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli
           [TaxId: 562]}
          Length = 111

 Score = 24.2 bits (52), Expect = 8.4
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 121 ESVIVDHYNEQLRALMSDPAA----NRELMDVIHKFRDEEQEHHDTGLEHGAEQ-APFYK 175
           E V++ H   +LR  M D        + L   + +    +QE  +              +
Sbjct: 10  ERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELR 69

Query: 176 LMTDVIKVGCKVAIE 190
            +  V ++  + A+ 
Sbjct: 70  NLVQVAELIVRCAMM 84


>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
          (IleRS) {Staphylococcus aureus [TaxId: 1280]}
          Length = 450

 Score = 24.9 bits (53), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 60 PKIQEMWDQEKAHKAKFEE 78
          P+IQE WD E  +    E+
Sbjct: 25 PQIQEKWDAEDQYHKALEK 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 801,052
Number of extensions: 35923
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 17
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)