BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9572
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 79.7 bits (195), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 77/159 (48%), Gaps = 43/159 (27%)
Query: 31 IKANSGSTTTFVITPKELGYIGIKVTA----TSNLAG------------DSMEGKLLVKP 74
I AN T ++ +TPK LG + V+A + L G D++ LLV+P
Sbjct: 825 ICANGRQTVSWAVTPKSLGNVNFTVSAEALESQELCGTEVPSVPEHGRKDTVIKPLLVEP 884
Query: 75 EGETQYKNKAIFVDLRKNKTF-----------SVNVTLDMPKNIVPGSEHVEVSAVACKI 123
EG L K TF S ++L +P N+V S VS +
Sbjct: 885 EG------------LEKETTFNSLLCPSGGEVSEELSLKLPPNVVEESARASVSV----L 928
Query: 124 GDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
GD+LG ++ N NL++MP+GCGE NM+ F PNI VL+YL
Sbjct: 929 GDILGSAMQNTQNLLQMPYGCGEXNMVLFAPNIYVLDYL 967
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 27 KKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAG--DSMEGKLLVKPEGETQYKNKA 84
K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q K
Sbjct: 723 KSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLAQPKMDT 782
Query: 85 IFV--DLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVACKIGDLLGPSIPNLANLIKMPF 142
F D KN+TF N LD+ K GS+ +E +LL I NL NL+ +P
Sbjct: 783 SFFCFDDYKNQTFPFN--LDINKKADNGSKKIEFRLNP----NLLTMVIKNLDNLLAVPT 836
Query: 143 GCGEQNMLNFVPNIVVLEYL 162
GCGEQNM+ FVPNI+VL+YL
Sbjct: 837 GCGEQNMVKFVPNILVLDYL 856
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 27 KKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAG--DSMEGKLLVKPEGETQYKNKA 84
K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q +
Sbjct: 723 KSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRMDT 782
Query: 85 IFV--DLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVACKIGDLLGPSIPNLANLIKMPF 142
F D KN+TF +N LD+ K GS +E +LL I NL +L+ +P
Sbjct: 783 RFFCFDDHKNQTFPIN--LDINKKADSGSTKIEFRLNP----NLLTTVIKNLDHLLGVPT 836
Query: 143 GCGEQNMLNFVPNIVVLEYL 162
GCGEQNM+ FVPNI+VL+YL
Sbjct: 837 GCGEQNMVKFVPNILVLDYL 856
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 10/140 (7%)
Query: 27 KKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAG--DSMEGKLLVKPEGETQYKNKA 84
K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q +
Sbjct: 723 KSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRMDT 782
Query: 85 IFV--DLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVACKIGDLLGPSIPNLANLIKMPF 142
F D KN+TF +N LD+ K GS +E +LL I NL +L+ +P
Sbjct: 783 RFFCFDDHKNQTFPIN--LDINKKADSGSTKIEFRLNP----NLLTTVIKNLDHLLGVPT 836
Query: 143 GCGEQNMLNFVPNIVVLEYL 162
GCGEQNM+ FVPNI+VL+YL
Sbjct: 837 GCGEQNMVKFVPNILVLDYL 856
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 26 RKKLTIKANSGSTTTFVITPKELGY--IGIKVTATSNLAGDSMEGKLLVKPEGETQYKNK 83
R++ IKA S FVI P E G + IK + L D + KL V PEG +
Sbjct: 867 RQQFPIKALSSRAVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKVVPEGVQKSIVT 926
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVACKIGDLLGPSIPN------LANL 137
+ +D R + + + + E+ GD + I N L +L
Sbjct: 927 IVKLDPRAKGVGGTQLEVIKARKLDDRVPDTEIETKIIIQGDPVAQIIENSIDGSKLNHL 986
Query: 138 IKMPFGCGEQNMLNFVPNIVVLEYL 162
I P GCGEQNM+ ++ YL
Sbjct: 987 IITPSGCGEQNMIRMAAPVIATYYL 1011
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 37/161 (22%)
Query: 25 RRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLVKPEGETQYKN 82
++ +TI A S +VI P ++G ++V A ++ D ++ L V PEG
Sbjct: 881 HQQTITIPARSSVAVPYVIVPLKIGLHEVEVKAAVYNHFISDGVKKTLKVVPEG------ 934
Query: 83 KAIFVDLRKNKTFSVNVTLDMPKNIVPGS---EHVEVSAVACKIGD--------LLGPSI 131
+R NKT +V TL+ P+++ G E V + ++ ++ D L G +
Sbjct: 935 ------VRVNKTVAVR-TLN-PEHLGQGGVQREEVPAADLSDQVPDTESETKILLQGTPV 986
Query: 132 PN----------LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI+ P GCGEQNM+ P ++ + YL
Sbjct: 987 AQMTEDAIDGERLKHLIQTPSGCGEQNMIGMTPTVIAVHYL 1027
>pdb|4FXK|B Chain B, Human Complement C4
Length = 767
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 27 KKLTIKANSGSTTTFVITPKELGYIGIKVTATSNL---AGDSMEGKLLVKPEGETQYKNK 83
+++ + A S F + P + +KV A + GD++ L ++ EG +
Sbjct: 206 QQVLVPAGSARPVAFSVVPTAAAAVSLKVVARGSFEFPVGDAVSKVLQIEKEGAIHREEL 265
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNIVP-GSEHVEVSAVACKIGDLLGP----SIPNLANLI 138
++ ++ ++ + + N++P G + V A D LG S +A+L+
Sbjct: 266 VYELNPLDHRGRTLEIPGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLL 325
Query: 139 KMPFGCGEQNMLNFVPNIVVLEYL 162
++P GCGEQ M+ P + YL
Sbjct: 326 RLPRGCGEQTMIYLAPTLAASRYL 349
>pdb|4FXG|B Chain B, Complement C4 In Complex With Masp-2
pdb|4FXG|E Chain E, Complement C4 In Complex With Masp-2
Length = 767
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 27 KKLTIKANSGSTTTFVITPKELGYIGIKVTATSNL---AGDSMEGKLLVKPEGETQYKNK 83
+++ + A S F + P + +KV A + GD++ L ++ EG +
Sbjct: 206 QQVLVPAGSARPVAFSVVPTAAAAVSLKVVARGSFEFPVGDAVSKVLQIEKEGAIHREEL 265
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNIVP-GSEHVEVSAVACKIGDLLGP----SIPNLANLI 138
++ ++ ++ + + N++P G + V A D LG S +A+L+
Sbjct: 266 VYELNPLDHRGRTLEIPGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLL 325
Query: 139 KMPFGCGEQNMLNFVPNIVVLEYL 162
++P GCGEQ M+ P + YL
Sbjct: 326 RLPRGCGEQTMIYLAPTLAASRYL 349
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 41/162 (25%)
Query: 26 RKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLVKPEGETQYKNK 83
++ +TI S + +VI P + G ++V A + D + L V PEG
Sbjct: 211 QQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEG------- 263
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH-----VEVSAVA 120
+R NKT +V TLD P+ + VP +E ++ + VA
Sbjct: 264 -----IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVA 316
Query: 121 CKIGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
D + L +LI P GCGEQNM+ P ++ + YL
Sbjct: 317 QMTEDAVDAE--RLKHLIVTPSGCGEQNMIGMTPTVIAVHYL 356
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 41/162 (25%)
Query: 26 RKKLTIKANSGSTTTFVITPKELGY--IGIKVTATSNLAGDSMEGKLLVKPEGETQYKNK 83
++ +TI S + +VI P + G + +K + D + L V PEG
Sbjct: 135 QQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEG------- 187
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH-----VEVSAVA 120
+R NKT +V TLD P+ + VP +E ++ + VA
Sbjct: 188 -----IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVA 240
Query: 121 CKIGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
D + L +LI P GCGEQNM+ P ++ + YL
Sbjct: 241 QMTEDAVDAE--RLKHLIVTPSGCGEQNMIGMTPTVIAVHYL 280
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 912
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 41/162 (25%)
Query: 26 RKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLVKPEGETQYKNK 83
++ +TI S + +VI P + G ++V A + D + L V PEG
Sbjct: 132 QQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEG------- 184
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH-----VEVSAVA 120
+R NKT +V TLD P+ + VP +E ++ + VA
Sbjct: 185 -----IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVA 237
Query: 121 CKIGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
D + L +LI P GCGE+NM+ P ++ + YL
Sbjct: 238 QMTEDAVDAE--RLKHLIVTPSGCGEENMIGMTPTVIAVHYL 277
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 915
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 41/162 (25%)
Query: 26 RKKLTIKANSGSTTTFVITPKELGY--IGIKVTATSNLAGDSMEGKLLVKPEGETQYKNK 83
++ +TI S + +VI P + G + +K + D + L V PEG
Sbjct: 135 QQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEG------- 187
Query: 84 AIFVDLRKNKTFSVNVTLDMPKNI------------------VPGSEH-----VEVSAVA 120
+R NKT +V TLD P+ + VP +E ++ + VA
Sbjct: 188 -----IRMNKTVAVR-TLD-PERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVA 240
Query: 121 CKIGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
D + L +LI P GCGE+NM+ P ++ + YL
Sbjct: 241 QMTEDAVDAE--RLKHLIVTPSGCGEENMIGMTPTVIAVHYL 280
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 31 IKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVDLR 90
++ +S TF + P E+G I + + + + L V PEG + + +D R
Sbjct: 888 VEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPR 947
Query: 91 -------KNKTFSVNVTLDMPKNIVPGSEHVEVSAV-ACKIGDLLGP--SIPNLANLIKM 140
+ K F + LD+ VP +E + +V +G++L S + L +
Sbjct: 948 GIYGTISRRKEFPYRIPLDL----VPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHL 1003
Query: 141 PFGCGEQNMLNFVPNIVVLEYLK 163
P G E +++ VP V YL+
Sbjct: 1004 PKGSAEAELMSVVPVFYVFHYLE 1026
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 31 IKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVDLR 90
++ +S TF + P E+G I + + + + L V PEG + + +D R
Sbjct: 792 VEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPR 851
Query: 91 -------KNKTFSVNVTLDMPKNIVPGSEHVEVSAV-ACKIGDLLGP--SIPNLANLIKM 140
+ K F + LD+ VP +E + +V +G++L S + L +
Sbjct: 852 GIYGTISRRKEFPYRIPLDL----VPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHL 907
Query: 141 PFGCGEQNMLNFVPNIVVLEYLK 163
P G E +++ VP V YL+
Sbjct: 908 PKGSAEAELMSVVPVFYVFHYLE 930
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 31 IKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVDLR 90
++ +S TF + P E+G I + + + + L V PEG + + +D R
Sbjct: 888 VEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPR 947
Query: 91 -------KNKTFSVNVTLDMPKNIVPGSEHVEVSAV-ACKIGDLLGP--SIPNLANLIKM 140
+ K F + LD+ VP +E + +V +G++L S + L +
Sbjct: 948 GIYGTISRRKEFPYRIPLDL----VPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHL 1003
Query: 141 PFGCGEQNMLNFVPNIVVLEYLK 163
P G E +++ VP V YL+
Sbjct: 1004 PKGSAEAELMSVVPVFYVFHYLE 1026
>pdb|1HZF|A Chain A, C4adg Fragment Of Human Complement Factor C4a
Length = 367
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 100 TLDMPKNIVP-----GSEHVEVSAVACKIGDLLGP----SIPNLANLIKMPFGCGEQNML 150
TL++P N P G + V A D LG S +A+L+++P GCGEQ +
Sbjct: 1 TLEIPGNSDPNXIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTXI 60
Query: 151 NFVPNIVVLEYL 162
P + YL
Sbjct: 61 YLAPTLAASRYL 72
>pdb|3FRP|G Chain G, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|B Chain B, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|G Chain G, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 252
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 26 RKKLTIKANSGSTTTFVITPKELGY--IGIKVTATSNLAGDSMEGKLLVKPEG 76
R++ IKA S FVI P E G + IK + L D + KL V PEG
Sbjct: 135 RQQFPIKALSSRAVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKVVPEG 187
>pdb|2GOX|A Chain A, Crystal Structure Of Efb-c / C3d Complex
pdb|2GOX|C Chain C, Crystal Structure Of Efb-c / C3d Complex
pdb|2NOJ|A Chain A, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|C Chain C, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|E Chain E, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|G Chain G, Crystal Structure Of Ehp C3D COMPLEX
pdb|3D5R|A Chain A, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5R|B Chain B, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5S|A Chain A, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
pdb|3D5S|B Chain B, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
Length = 297
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI P G GEQNM+ P ++ + YL
Sbjct: 10 LKHLIVTPSGAGEQNMIGMTPTVIAVHYL 38
>pdb|3OXU|A Chain A, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|B Chain B, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|C Chain C, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3RJ3|A Chain A, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|B Chain B, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|C Chain C, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
Length = 317
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI P G GEQNM+ P ++ + YL
Sbjct: 14 LKHLIVTPSGAGEQNMIGMTPTVIAVHYL 42
>pdb|1C3D|A Chain A, X-ray Crystal Structure Of C3d: A C3 Fragment And Ligand
For Complement Receptor 2
pdb|2XQW|A Chain A, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
pdb|2XQW|B Chain B, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 294
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI P G GEQNM+ P ++ + YL
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYL 35
>pdb|1W2S|A Chain A, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 307
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI P G GEQNM+ P ++ + YL
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYL 35
>pdb|2WY7|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d Revealing An
Alternative Binding Mode
pdb|2WY8|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d
pdb|3OED|A Chain A, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|B Chain B, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 310
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI P G GEQNM+ P ++ + YL
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYL 35
>pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure
Length = 308
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 LANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
L +LI P G GEQNM+ P ++ + YL
Sbjct: 7 LKHLIVTPSGAGEQNMIGMTPTVIAVHYL 35
>pdb|1QSJ|A Chain A, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|B Chain B, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|C Chain C, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|D Chain D, N-Terminally Truncated C3dg Fragment
Length = 277
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 144 CGEQNMLNFVPNIVVLEYL 162
CGEQNM+ P ++ + YL
Sbjct: 1 CGEQNMIGMTPTVIAVHYL 19
>pdb|4GHU|A Chain A, Crystal Structure Of Traf3CARDIF
Length = 198
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 8 LRYNIREK-----VYLYEFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA 62
LR+ + E V +++ ++R+K +A G T + P GY G K+ A L
Sbjct: 28 LRFQVLETASYNGVLIWKIRDYKRRKQ--EAVMGKTLSLYSQPFYTGYFGYKMCARVYLN 85
Query: 63 GDSM 66
GD M
Sbjct: 86 GDGM 89
>pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1ZMS|A Chain A, Lmp1 Protein Binds To Traf3 As A Structural Cd40
pdb|2GKW|A Chain A, Key Contacts Promote Recongnito Of Baff-R By Traf3
Length = 192
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 8 LRYNIREK-----VYLYEFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA 62
LR+ + E V +++ ++R+K +A G T + P GY G K+ A L
Sbjct: 28 LRFQVLETASYNGVLIWKIRDYKRRKQ--EAVMGKTLSLYSQPFYTGYFGYKMCARVYLN 85
Query: 63 GDSM 66
GD M
Sbjct: 86 GDGM 89
>pdb|1RF3|A Chain A, Structurally Distinct Recognition Motifs In
Lymphotoxin-B Receptor And Cd40 For Traf-Mediated
Signaling
Length = 200
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 8 LRYNIREK-----VYLYEFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA 62
LR+ + E V +++ ++R+K +A G T + P GY G K+ A L
Sbjct: 28 LRFQVLETASYNGVLIWKIRDYKRRKQ--EAVMGKTLSLYSQPFYTGYFGYKMCARVYLN 85
Query: 63 GDSM 66
GD M
Sbjct: 86 GDGM 89
>pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein In Superopen Form
pdb|1Z16|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein With Bound Leucine
pdb|1Z17|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Ligand Isoleucine
pdb|1Z18|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Valine
Length = 344
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 48 LGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVDLRKNK 93
+G G+ + SN+AG+S EG L+ KP+ Q VD K K
Sbjct: 223 MGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAK 268
>pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function.
Refined X-Ray Structures Of The
LeucineISOLEUCINEVALINE-Binding Protein And Its Complex
With Leucine
Length = 344
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 48 LGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAIFVDLRKNK 93
+G G+ + SN+AG+S EG L+ KP+ Q VD K K
Sbjct: 223 MGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAK 268
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 8 LRYNIREK-----VYLYEFEVFRRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLA 62
LR+ + E V +++ ++R+K +A G T + P GY G K+ A L
Sbjct: 64 LRFQVLETASYNGVLIWKIRDYKRRKQ--EAVMGKTLSLYSQPFYTGYFGYKMCARVYLN 121
Query: 63 GDSM 66
GD M
Sbjct: 122 GDGM 125
>pdb|1USG|A Chain A, L-Leucine-Binding Protein, Apo Form
pdb|1USK|A Chain A, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|B Chain B, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|C Chain C, L-Leucine-Binding Protein With Leucine Bound
pdb|1USK|D Chain D, L-Leucine-Binding Protein With Leucine Bound
pdb|1USI|A Chain A, L-Leucine-Binding Protein With Phenylalanine Bound
pdb|1USI|C Chain C, L-Leucine-Binding Protein With Phenylalanine Bound
Length = 346
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 48 LGYIGIKVTATSNLAGDSMEGKLLVKPEGETQY-KNKAIFVDLRKNK 93
+G G+ + SN+AGD+ EG L+ P+ Q N+ I L+ +K
Sbjct: 223 MGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK 269
>pdb|2LBP|A Chain A, Structure Of The L-Leucine-Binding Protein Refined At 2.4
Angstroms Resolution And Comparison With The Leu(Slash)
Ile(Slash)val-Binding Protein Structure
Length = 346
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 48 LGYIGIKVTATSNLAGDSMEGKLLVKPEGETQY-KNKAIFVDLRKNK 93
+G G+ + SN+AGD+ EG L+ P+ Q N+ I L+ +K
Sbjct: 223 MGPEGVGNASLSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,727,217
Number of Sequences: 62578
Number of extensions: 183462
Number of successful extensions: 431
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 39
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)