RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9572
(163 letters)
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 114 bits (285), Expect = 3e-30
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 25 RRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAG--DSMEGKLLVKPEGETQYKN 82
K +++ G +F+I ++LG + ++V A+ L D++E + V PE Q +
Sbjct: 721 YTKSVSVPPKVGVPISFLIKARKLGEMAVRVKASIMLGHETDALEKVIRVMPESLVQPRM 780
Query: 83 KAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVSAVACKIGDLLGPSIPNLANLIKMPF 142
F +K + + LD+ K GS +E +LL I NL +L+ +P
Sbjct: 781 DTRFFCFDDHKNQTFPINLDINKKADSGSTKIEFRL----NPNLLTTVIKNLDHLLGVPT 836
Query: 143 GCGEQNMLNFVPNIVVLEYLK 163
GCGEQNM+ FVPNI+VL+YL
Sbjct: 837 GCGEQNMVKFVPNILVLDYLH 857
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 102 bits (255), Expect = 3e-26
Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 25 RRKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKA 84
+ + ++ +S TF + P E+G I + + + + L V PEG +
Sbjct: 882 KCVRQKVEGSSSHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSG 941
Query: 85 IFVDLR---KNKTFSVNVTLDMPKNIVPGSEHVE-VSAVACKIGDLLGPSIP--NLANLI 138
+ +D R + +P ++VP +E +S +G++L + + L
Sbjct: 942 VTLDPRGIYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILT 1001
Query: 139 KMPFGCGEQNMLNFVPNIVVLEYLK 163
+P G E +++ VP V YL+
Sbjct: 1002 HLPKGSAEAELMSVVPVFYVFHYLE 1026
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 95.2 bits (235), Expect = 1e-23
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 25 RRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLVKPEGETQYKN 82
++ +TI A S +VI P ++G ++V A ++ D ++ L V PEG K
Sbjct: 881 HQQTITIPARSSVAVPYVIVPLKIGLHEVEVKAAVYNHFISDGVKKTLKVVPEGVRVNKT 940
Query: 83 KAIFVDL----RKNKTFSVNVTLDMPKNIVP-GSEHVEVSAVACKIGDLLGPSIP--NLA 135
A+ + V + VP ++ + + +I L
Sbjct: 941 VAVRTLNPEHLGQGGVQREEVPAADLSDQVPDTESETKILLQGTPVAQMTEDAIDGERLK 1000
Query: 136 NLIKMPFGCGEQNMLNFVPNIVVLEYLK 163
+LI+ P GCGEQNM+ P ++ + YL
Sbjct: 1001 HLIQTPSGCGEQNMIGMTPTVIAVHYLD 1028
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change,
blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo
sapiens}
Length = 1451
Score = 92.1 bits (227), Expect = 2e-22
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 6 NVLRYNIREKVYLYEFEVF-------RRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT 58
N L IR V L F + I AN T ++ +TPK LG + V+A
Sbjct: 793 NYLPKCIRVSVQLEASPAFLAVPVEKEQAPHCICANGRQTVSWAVTPKSLGNVNFTVSAE 852
Query: 59 SNLAG----------------DSMEGKLLVKPEGETQYKNKAIFVDLRKNKTFSVNVTLD 102
+ + D++ LLV+PEG + + S ++L
Sbjct: 853 ALESQELCGTEVPSVPEHGRKDTVIKPLLVEPEGLEKETTFNSLLCP-SGGEVSEELSLK 911
Query: 103 MPKNIVPGSEHVEVSAVACKIGDLLGPSIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYL 162
+P N+V S VS +GD+LG ++ N NL++MP+GCGE NM+ F PNI VL+YL
Sbjct: 912 LPPNVVEESARASVS----VLGDILGSAMQNTQNLLQMPYGCGEXNMVLFAPNIYVLDYL 967
Query: 163 K 163
Sbjct: 968 N 968
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 91.0 bits (224), Expect = 4e-22
Identities = 44/179 (24%), Positives = 67/179 (37%), Gaps = 25/179 (13%)
Query: 6 NVLRYNIREKVYLYEFEVF---------RRKKLTIKANSGSTTTFVITPKELGYIGIKVT 56
N + +I +V L F R++ IKA S FVI P E G +++
Sbjct: 838 NYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQGLHDVEIK 897
Query: 57 AT--SNLAGDSMEGKLLVKPEGETQYKNKAIFVDLRKNKTFSVNVT----LDMPKNIVPG 110
A+ L D + KL V PEG + + +D R + + +
Sbjct: 898 ASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDT 957
Query: 111 SEHVEVSAVACKIGDLLGPSIPN------LANLIKMPFGCGEQNMLNFVPNIVVLEYLK 163
++ GD + I N L +LI P GCGEQNM+ ++ YL
Sbjct: 958 EIETKIII----QGDPVAQIIENSIDGSKLNHLIITPSGCGEQNMIRMAAPVIATYYLD 1012
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune
system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B*
2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B*
2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C*
3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Length = 915
Score = 88.2 bits (217), Expect = 4e-21
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 9/148 (6%)
Query: 25 RRKKLTIKANSGSTTTFVITPKELGYIGIKVTAT--SNLAGDSMEGKLLVKPEGETQYKN 82
++ +TI S + +VI P + G ++V A + D + L V PEG K
Sbjct: 134 HQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKT 193
Query: 83 KAIFV----DLRKNKTFSVNVTLDMPKNIVP-GSEHVEVSAVACKIGDLLGPSIP--NLA 135
A+ L + ++ + VP + + + ++ L
Sbjct: 194 VAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLK 253
Query: 136 NLIKMPFGCGEQNMLNFVPNIVVLEYLK 163
+LI P GCGEQNM+ P ++ + YL
Sbjct: 254 HLIVTPSGCGEQNMIGMTPTVIAVHYLD 281
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_G* 3hs0_B*
Length = 252
Score = 83.7 bits (206), Expect = 2e-20
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 19/150 (12%)
Query: 6 NVLRYNIREKVYLYEFEVF---------RRKKLTIKANSGSTTTFVITPKELGYIGIKVT 56
N + +I +V L F R++ IKA S FVI P E G +++
Sbjct: 106 NYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPLEQGLHDVEIK 165
Query: 57 AT--SNLAGDSMEGKLLVKPEGETQYKNKAIFVDLRKNKTFSVN---VTLDMPKNIVPGS 111
A+ L D + KL V PEG + + +D R + + VP +
Sbjct: 166 ASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDDRVPDT 225
Query: 112 E-HVEVSAVACKIGDLLGPSIPNLANLIKM 140
E ++ GD + I N + K+
Sbjct: 226 EIETKIIIQ----GDPVAQIIENSIDGSKL 251
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A
{Homo sapiens} SCOP: a.102.4.4
Length = 367
Score = 69.3 bits (168), Expect = 1e-14
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 96 SVNVTLDMPKNIVPGSE-HVEVSAVACKIGDLLGPSIP----NLANLIKMPFGCGEQNML 150
++ + + N++P + + V A D LG +A+L+++P GCGEQ M+
Sbjct: 1 TLEIPGNSDPNMIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMI 60
Query: 151 NFVPNIVVLEYLK 163
P + YL
Sbjct: 61 YLAPTLAASRYLD 73
>2wy7_A Complement C3D fragment; immune system, immune response, innate
immunity, complement inflammatory response; 1.70A {Homo
sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Length = 310
Score = 57.6 bits (138), Expect = 1e-10
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 130 SIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLK 163
L +LI P G GEQNM+ P ++ + YL
Sbjct: 3 DAERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLD 36
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A
{Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A
2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Length = 277
Score = 47.9 bits (113), Expect = 2e-07
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 144 CGEQNMLNFVPNIVVLEYLK 163
CGEQNM+ P ++ + YL
Sbjct: 1 CGEQNMIGMTPTVIAVHYLD 20
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-05
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 76 GETQYKNKAIFVDLRKN--KTFSVNVTLDMPKNIVPGSEHVEVSAVACKIGDLLGPSIPN 133
GE QY+ K I F DMPK+I+ E I ++ +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE----------IDHIIM--SKD 59
Query: 134 LANLIKMPFGC----GEQNMLNFVPNIVVLEY 161
+ F E+ + FV ++ + Y
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.0
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 58/148 (39%)
Query: 33 ANSGSTTTFVITPKE----LGYIGIK-------VTATSNLAGDSM---EGK----LLVKP 74
A + S +F ++ ++ L +IG++ + ++ DS+ EG L +
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS- 342
Query: 75 EGETQYKNKAIFVDLRKNKTFSVNVTLDMPKNIVPGSEHVEVS-------AVACKIGDLL 127
TQ + + + K N L P + VE+S V
Sbjct: 343 -NLTQ---EQVQDYVNK-----TNSHL-------PAGKQVEISLVNGAKNLVVS------ 380
Query: 128 GPSIPN-LANL------IKMPFGCGEQN 148
GP P L L K P G +Q+
Sbjct: 381 GP--PQSLYGLNLTLRKAKAPSGL-DQS 405
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 1.7
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 43 ITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKN-KAIFVDLRKNKT------- 94
+T +LG T+T A D E + + + +K T
Sbjct: 1332 LTIDDLGVASFHGTSTK--ANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAA 1389
Query: 95 --FSVNVTLDMPKN-IVPGSEHVEVSAVACKIGDLL 127
+ +N L + + I+PG+ + + + + +
Sbjct: 1390 GAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYV 1425
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU
PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1
g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A
2opf_A* 1q3b_A*
Length = 262
Score = 25.6 bits (57), Expect = 8.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 66 MEGKLLVKPEGETQYKNKAIFVDLR 90
+ G V GE + + V L+
Sbjct: 70 LYGVWRVVDTGEEPQTTRVLRVKLQ 94
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton,
actin-binding inflammatory response, metal-binding,
signaling protein; 1.35A {Homo sapiens}
Length = 191
Score = 25.2 bits (56), Expect = 9.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 88 DLRKNKTFSVNVTLD 102
+L + +VNV LD
Sbjct: 4 ELIGAQAHAVNVILD 18
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR
{Human immunodeficiency virus 1} SCOP: a.61.1.1
a.73.1.1
Length = 289
Score = 25.4 bits (56), Expect = 9.9
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 58 TSNLAG---DSMEGKLLVKPEGETQYKNKAIFVDLRKNKTFSVN 98
S L+G D E K+ ++P G+ QYK K I R+ + F+VN
Sbjct: 5 ASVLSGGELDKWE-KIRLRPGGKKQYKLKHIVWASRELERFAVN 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.386
Gapped
Lambda K H
0.267 0.0386 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,412,592
Number of extensions: 135575
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 18
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)