RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9572
         (163 letters)



>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement
           receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 133 NLANLIKMPFGCGEQNMLNFVPNIVVLEYLK 163
            L +LI  P G GEQNM+   P ++ + YL 
Sbjct: 6   RLKHLIVTPSGAGEQNMIGMTPTVIAVHYLD 36


>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 326

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 130 SIPNLANLIKMPFGCGEQNMLNFVPNIVVLEYLK 163
           S   +A+L+++P GCGEQ M+   P +    YL 
Sbjct: 1   SPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLD 34


>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 31.5 bits (71), Expect = 0.016
 Identities = 9/76 (11%), Positives = 17/76 (22%), Gaps = 7/76 (9%)

Query: 6   NVLRYNIREKVYLYEFEVFR-----RKKLTIKANSGSTTTFVITPKELGYIGIKVTATSN 60
             L+  +  K YL      +     +    +  ++    TF         + I       
Sbjct: 32  TELKECMVVKTYLISSIPLQGAFNYKYTACLCDDN--PKTFYWDFYTNRTVQIAAVVDVI 89

Query: 61  LAGDSMEGKLLVKPEG 76
                      V P  
Sbjct: 90  RELGICPDDAAVIPIK 105


>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc
           43554 [TaxId: 232]}
          Length = 464

 Score = 28.1 bits (62), Expect = 0.55
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 12/95 (12%)

Query: 26  RKKLTIKANSGSTTTFVITPKELGYIGIKVTATSNLAGDSMEGKLLVKPEGETQYKNKAI 85
             +  I A S       +      Y  + +   SN+    +E  +++KP      KN  +
Sbjct: 41  ALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIR-VESDVIIKPTWNGDGKNHRL 99

Query: 86  FVDLRKNKT-----------FSVNVTLDMPKNIVP 109
           F     N             F V+      KN+  
Sbjct: 100 FEVGVNNIVRNFSFQGLGNGFLVDFKDSRDKNLAV 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 586,101
Number of extensions: 25000
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)