BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9573
(809 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/815 (31%), Positives = 413/815 (50%), Gaps = 26/815 (3%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDID 60
M+ E WLR +NP + S+ LAN +TM+GLE + +E HP+ D
Sbjct: 1 MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD 60
Query: 61 NFNICKVDTYKN-ILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119
+ KV+ + +LDIVC PN R GL+V A IG+ L F I K S
Sbjct: 61 KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVL-----PGDFKIKAAKLRGEPS 115
Query: 120 YGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGI 179
G+LCS +L I++ + + ELP DAPIG + +Y K ++ I +TPNR DCL ++G+
Sbjct: 116 EGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGV 175
Query: 180 AREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMK 239
AR++++L+ PL + LP+ + A + C R+ GR+++GIN KA TP WMK
Sbjct: 176 ARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMK 235
Query: 240 IRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETXXXXXXXXX 299
+L G + + + D+TNYV+LELG P++ FD +I G + +R GET
Sbjct: 236 EKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEA 295
Query: 300 XXXXXXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTE 359
K +++ GI G + V T+++ L AF+ P SI G++ + L T+
Sbjct: 296 KLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTD 355
Query: 360 SSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRKEIKVRSERVI 419
+S+R+ERG+D + K +ER T L+I+ICG +P R I +R ++
Sbjct: 356 ASHRYERGVDPALQHKAMERATRLLIDICGG-EAGPVIDITNEATLPKRATITLRRSKLD 414
Query: 420 KILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXXXXRIYGFENI 479
+++G + ++++++I RL + + + + P+ RFD+ R+YG+ NI
Sbjct: 415 RLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNI 474
Query: 480 PISLPITVSKI-SPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPI 538
P P+ S I +E SL ++ L YQEVI YSF++ +++ + +
Sbjct: 475 P-DEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVE--AL 531
Query: 539 ELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSG 598
L +PIS + + MR +L L+ + YN R+ R+R+FE +F+ D+ +
Sbjct: 532 LLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGL-----RFVPDTQAPLGI 586
Query: 599 YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF-FPIKLN---FLKINNSILH 654
++L VI G E W +D++DLK DLE++ KLN F N LH
Sbjct: 587 RQDLMLAGVIC-GNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPALH 645
Query: 655 PNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPN 714
P +SA I+ K + IGF+G +HP L++K DL + FE++ +L R +P +IS+FP
Sbjct: 646 PGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFPA 705
Query: 715 VVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRC 774
RDI + +N+ D++ + + ++LFD Y GK + + KS A
Sbjct: 706 NRRDIAVVVAENVPAADIL-----SECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISL 760
Query: 775 ILQDPKKTLKXXXXXXXXXXXXXSVCKNFNAKLRN 809
ILQD +TL+ ++ + F A LR+
Sbjct: 761 ILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD 795
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 223/798 (27%), Positives = 360/798 (45%), Gaps = 37/798 (4%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDID 60
M I WL+ ++ + DLA +T +G+E + + HPD D
Sbjct: 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKHPDAD 60
Query: 61 NFNICKVD-TYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119
NIC+VD + + IVC PN+ G V A +G L K K + E+ S
Sbjct: 61 KLNICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLPGGIKIKRAKLRGER-----S 115
Query: 120 YGLLCSEYDLKINNK------NKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDC 173
G++CS ++ I++ +F P + G + N+ LTPNR D
Sbjct: 116 EGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNRADA 175
Query: 174 LSLLGIAREISILSNTPLKLLNTKI--TLPNYKEILPVKISAIDLCGRFSGRIIRGINPK 231
LS++G A E++ L T + T+ T + L V I + +S R+++ ++ +
Sbjct: 176 LSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE 235
Query: 232 ALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKI-SGELNIRWGNIGET 290
+P W++ RL +G + ++ + DI+NYV+LE G P+++FD I S E+ +R ET
Sbjct: 236 P-SPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEET 294
Query: 291 XXXXXXXXXXXXXXXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGK 350
+ I+L+G++ G + VT T ++ + A + P SIR
Sbjct: 295 MTTLDNNERKLVDTDIVISNGQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHT 354
Query: 351 SNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRKE 410
S NL +E+S RFE+GI + ++R L+ E+ +
Sbjct: 355 SRRLNLRSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVLQDRVSSGDLGSFVT--P 412
Query: 411 IKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXXX 470
I + +E+V K +G L+N EI +IF +L F K V P+ R D+
Sbjct: 413 IDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEV 472
Query: 471 XRIYGFENIPISLPITVSKIS-PIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF 529
RIYG++ IP SLP+ S + + +++ L A + I YS + KDF
Sbjct: 473 ARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDF 532
Query: 530 SQNINNYP-IELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKF 588
+ + P I LL P+S+ T+R +L+ L+ YN+ RK + +RL+EI V+ +
Sbjct: 533 A--LQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGE 590
Query: 589 IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKI 648
+ P E++ ++ I G + W + ID+F K ++ + + L F
Sbjct: 591 -GELP------DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYK 643
Query: 649 NNSI--LHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIF-FEVDALELQKRQIPN 705
I LHP R+A++ IGFIGE+HP + DL +F DA+ N
Sbjct: 644 AGKIEGLHPGRTAIVSLGGAGIGFIGELHPQVAADNDLKRTYVFELNYDAMMQVAVGYIN 703
Query: 706 YIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKD 765
Y QI KFP V RDI N DV + + +N+ I+QS +FD Y G+ L+
Sbjct: 704 YEQIPKFPGVTRDIALEVN-----HDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEK 758
Query: 766 NEKSFAFRCILQDPKKTL 783
+KS A R D + TL
Sbjct: 759 GKKSVAIRLNYLDTEDTL 776
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 265 bits (676), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 220/798 (27%), Positives = 361/798 (45%), Gaps = 41/798 (5%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDID 60
M I WL+ ++ + DLA +T +G+E + N +
Sbjct: 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVD----NMIDYSKDIKNLVVGYIQSKEKG 56
Query: 61 NFNICKVD-TYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119
+ NIC+VD + + IVC PN+ G V A +G L K K + E+ S
Sbjct: 57 SGNICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLPGGIKIKRAKLRGER-----S 111
Query: 120 YGLLCSEYDLKINNK------NKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDC 173
G++CS ++ I++ +F P + G + N+ LTPNR D
Sbjct: 112 EGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNRADA 171
Query: 174 LSLLGIAREISILSNTPLKLLNTKI--TLPNYKEILPVKISAIDLCGRFSGRIIRGINPK 231
LS++G A E++ L T + T+ T + L V I + +S R+++ ++ +
Sbjct: 172 LSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE 231
Query: 232 ALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKI-SGELNIRWGNIGET 290
+P W++ RL +G + ++ + DI+NYV+LE G P+++FD I S E+ +R ET
Sbjct: 232 P-SPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEET 290
Query: 291 XXXXXXXXXXXXXXXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGK 350
+ I+L+G++ G + VT T ++ + A + P SIR
Sbjct: 291 MTTLDNNERKLVDTDIVISNGQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHT 350
Query: 351 SNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRKE 410
S NL +E+S RFE+GI + ++R L+ E+ +
Sbjct: 351 SRRLNLRSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVLQDRVSSGDLGSFVT--P 408
Query: 411 IKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXXX 470
I + +E+V K +G L+N EI +IF +L F K V P+ R D+
Sbjct: 409 IDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEV 468
Query: 471 XRIYGFENIPISLPITVSKIS-PIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF 529
RIYG++ IP SLP+ S + + +++ L A + I YS + KDF
Sbjct: 469 ARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDF 528
Query: 530 SQNINNYP-IELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKF 588
+ + P I LL P+S+ T+R +L+ L+ YN+ RK + +RL+EI V+ +
Sbjct: 529 A--LQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGE 586
Query: 589 IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKI 648
+ P E++ ++ I G + W + ID+F K ++ + + L F
Sbjct: 587 -GELP------DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYK 639
Query: 649 NNSI--LHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIF-FEVDALELQKRQIPN 705
I LHP R+A++ + ++IGFIGE+HP + DL +F DA+ N
Sbjct: 640 AGKIEGLHPGRTAIVSLEGQDIGFIGELHPQVAADNDLKRTYVFELNYDAMMQVAVGYIN 699
Query: 706 YIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKD 765
Y QI KFP V RDI N DV + + +N+ I+QS +FD Y G+ L+
Sbjct: 700 YEQIPKFPGVTRDIALEVN-----HDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEK 754
Query: 766 NEKSFAFRCILQDPKKTL 783
+KS A R D + TL
Sbjct: 755 GKKSVAIRLNYLDTEDTL 772
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 208/803 (25%), Positives = 344/803 (42%), Gaps = 65/803 (8%)
Query: 1 MQIPENWLRTIINPKLSSND-LANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDI 59
M++P +WL+ + P+L S + L L G ET++IE HP I
Sbjct: 1 MRVPFSWLKAYV-PELESPEVLEERLAGLGFETDRIER--VFPIPRGVVFARVLEAHP-I 56
Query: 60 DNFNICKV--DTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI 117
+ ++ D + + ++V N R G+ V A+ G+ L + +K + +
Sbjct: 57 PGTRLKRLVLDAGRTV-EVVSGAENARKGIGVALALPGTELPGLGQK----VGERVIQGV 111
Query: 118 KSYGLLCSEYDLKINNKNKYLFELPEDA-PIGKNFYDYYKFNNLKFVIKLTPNRGDCLSL 176
+S+G+ S +L + L E PEDA P G + + + +++TPNR D L L
Sbjct: 112 RSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWP-EEVVLDLEVTPNRPDALGL 170
Query: 177 LGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCG--RFSGRIIRGINPKALT 234
LG+AR++ L L+ + L LP + D G F+ G+ A +
Sbjct: 171 LGLARDLHALGYA---LVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLR-VAPS 226
Query: 235 PKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETXXXX 294
P WM+ L +G + ++ + D+TNYVMLE P++ FDL + + +R GE
Sbjct: 227 PLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTL 286
Query: 295 XXXXXXXXX-----XXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRG 349
F + L+G++ G ++ V +T+ I L VA + P SIR
Sbjct: 287 DGVERTLHPEDLVIAGWRGEESFPL-GLAGVMGGAESEVREDTEAIALEVACFDPVSIRK 345
Query: 350 KSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRK 409
+ + L TE+S+RFERG+D + R +L+ + G +
Sbjct: 346 TARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAGARVAEALLEAGSPKPP---E 402
Query: 410 EIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXX 469
I R E ++LG E I RL + + V PP+HR DL
Sbjct: 403 AIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEE 462
Query: 470 XXRIYGFENIPISLPITVSKISPIKEGYQSLF----SIRHQLAFADYQEVINYSFIEDSL 525
RI G+E IP++LP +P G ++ + +R L+ +QEV YSF++
Sbjct: 463 VARIQGYETIPLALPAFFP--APDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPED 520
Query: 526 EKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLERIRLFEIANVYL 584
+ F + + K +R+ L LV + NL + ER LFE+ V+
Sbjct: 521 ARRFRLDPPRLLLLNPLAPEKA--ALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR 578
Query: 585 HDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN 644
+E +A + +G + W +E R YF LK LE LF + L
Sbjct: 579 E--------------REETHLAGLLFGEGVGLPWAKE-RLSGYFLLKGYLEALFARLGLA 623
Query: 645 FLKINNS--ILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPI-FFEVDALELQKR 701
F + LHP S + + + +GF+G +HP + Q+ +LP P+ FE+ L L +
Sbjct: 624 FRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP--PVHLFELR-LPLPDK 680
Query: 702 QIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGK 761
+ + S+ P RD+ + +V + + ++S++LFD Y G
Sbjct: 681 PL-AFQDPSRHPAAFRDLAVVVPAPTPYGEVEALV-----REAAGPYLESLALFDLYQGP 734
Query: 762 KLKDNEKSFAFRCILQDPKKTLK 784
L + KS AF + PK+TL+
Sbjct: 735 PLPEGHKSLAFHLRFRHPKRTLR 757
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 207/801 (25%), Positives = 342/801 (42%), Gaps = 61/801 (7%)
Query: 1 MQIPENWLRTIINPKLSSND-LANLLTMSGLETEKIETNXXXXXXXXXXXXXXXXXHPDI 59
M++P +WL+ + P+L S + L L G ET++IE HP I
Sbjct: 1 MRVPFSWLKAYV-PELESPEVLEERLAGLGFETDRIER--VFPIPRGVVFARVLEAHP-I 56
Query: 60 DNFNICKV--DTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI 117
+ ++ D + + ++V N R G+ V A+ G+ L + +K + +
Sbjct: 57 PGTRLKRLVLDAGRTV-EVVSGAENARKGIGVALALPGTELPGLGQK----VGERVIQGV 111
Query: 118 KSYGLLCSEYDLKINNKNKYLFELPEDA-PIGKNFYDYYKFNNLKFVIKLTPNRGDCLSL 176
+S+G+ S +L + L E PEDA P G + + + +++TPNR D L L
Sbjct: 112 RSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWP-EEVVLDLEVTPNRPDALGL 170
Query: 177 LGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCG--RFSGRIIRGINPKALT 234
LG+AR++ L L+ + L LP + D G F+ G+ A +
Sbjct: 171 LGLARDLHALGYA---LVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLR-VAPS 226
Query: 235 PKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETXXXX 294
P WM+ L +G + ++ + D+TNYVMLE P++ FDL + + +R GE
Sbjct: 227 PLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTL 286
Query: 295 XXXXXXXXX-----XXXXXXXXFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRG 349
F + L+G++ G ++ V +T+ I L VA + P SIR
Sbjct: 287 DGVERTLHPEDLVIAGWRGEESFPL-GLAGVMGGAESEVREDTEAIALEVACFDPVSIRK 345
Query: 350 KSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTXXXXXXXXXXXXXNIPVRK 409
+ + L TE+S+RFERG+D + R +L+ + G +
Sbjct: 346 TARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAGARVAEALLEAGSPKPP---E 402
Query: 410 EIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLXXXXXXXXX 469
I R E ++LG E I RL + + V PP+HR DL
Sbjct: 403 AIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEE 462
Query: 470 XXRIYGFENIPISLPI--TVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEK 527
RI G+E IP++LP ++ Y+ +R L+ +QEV YSF++ +
Sbjct: 463 VARIEGYETIPLALPAFFPAPDNRAVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDAR 522
Query: 528 DFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLERIRLFEIANVYLHD 586
F + + K +R+ L LV + NL + ER LFE+ V+
Sbjct: 523 RFRLDPPRLLLLNPLAPEKA--ALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRE- 579
Query: 587 KFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646
+E +A + +G + W +E R YF LK LE LF + L F
Sbjct: 580 -------------REETHLAGLLFGEGVGLPWAKE-RLSGYFLLKGYLEALFARLGLAFR 625
Query: 647 KINNS--ILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPI-FFEVDALELQKRQI 703
+ LHP S + + + +GF+G +HP + Q+ +LP P+ FE+ L L + +
Sbjct: 626 VEAEAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP--PVHLFELR-LPLPDKPL 682
Query: 704 PNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKL 763
+ S+ P RD+ + +V + + ++S++LFD Y G L
Sbjct: 683 -AFQDPSRHPAAFRDLAVVVPAPTPYGEVEALV-----REAAGPYLESLALFDLYQGPPL 736
Query: 764 KDNEKSFAFRCILQDPKKTLK 784
+ KS AF + PK+TL+
Sbjct: 737 PEGHKSLAFHLRFRHPKRTLR 757
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 167/392 (42%), Gaps = 64/392 (16%)
Query: 314 IISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKT 373
++S+ IING + +T+NT++I++ G DF+K
Sbjct: 230 VLSMPPIINGDHSRITVNTRNIFIECT--------------------------GTDFTKA 263
Query: 374 IKCLERVTNLIIEIC-------GTXXXXXXXXXXXXXNIPVRKEIKVRSERVIKILGIKL 426
L+ + + E C + RKE+ VR++ + K +GI+
Sbjct: 264 KIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEM-VRADLINKKVGIRE 322
Query: 427 TNQEISNIFIR--LKFHFI-QKNNIFLVIPPAHRFDLXXXXXXXXXXXRIYGFENIPISL 483
T + ++ + R LK I N I + IPP R D+ YG+ NI ++L
Sbjct: 323 TPENLAKLLTRMYLKSEVIGDGNQIEIEIPPT-RADIIHACDIVEDAAIAYGYNNIQMTL 381
Query: 484 P--ITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSF-----IEDSLEKDFSQNINNY 536
P T++ P+ + + L RH +A A + E + ++ I D L D S
Sbjct: 382 PKTYTIANQFPLNKLTELL---RHDMAAAGFTEALTFALCSQEDIADKLGVDISAT---K 435
Query: 537 PIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTV 596
+ + NP + +F R+TL+ L+ I N K L ++LFEI+++ IKDS V
Sbjct: 436 AVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLP-LKLFEISDI-----VIKDSNTDV 489
Query: 597 SGYKELKKIAVIAYG--PLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFLKINNSILH 654
G K + + + Y P E G +R + D+ + + IK +
Sbjct: 490 -GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKAS----EGPAFF 544
Query: 655 PNRSALIFKKTKNIGFIGEIHPILQQKYDLPL 686
P R A IF + +++G +G +HP + K++L +
Sbjct: 545 PGRCAEIFARGQSVGKLGVLHPDVITKFELTM 576
>pdb|3IG2|A Chain A, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|B Chain B, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|C Chain C, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|D Chain D, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
Length = 213
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 503 IRHQLAFADYQEVINYSFIE----DSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGS 558
+ QL + E++N S D LE S+N+ + LLNP+S N R TL+
Sbjct: 13 VAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL----VXLLNPLSADLNCXRQTLLFG 68
Query: 559 LVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQW 618
+ +I +N RK ++ FE N Y D K+ ++ Y E + + G + W
Sbjct: 69 GLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKXVSNSW 128
Query: 619 GEENRNIDYFDLKNDLENLFFPIKLNF 645
+ N ++LK +EN+F + L+
Sbjct: 129 AHADENTSVYELKAYVENIFKRLGLDL 155
>pdb|3ICA|A Chain A, The Crystal Structure Of The Beta Subunit Of A
Phenylalanyl-Trna Synthetase From Porphyromonas
Gingivalis W83
pdb|3ICA|B Chain B, The Crystal Structure Of The Beta Subunit Of A
Phenylalanyl-Trna Synthetase From Porphyromonas
Gingivalis W83
Length = 213
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
Query: 503 IRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNN 562
+ QL A + E++N S S + + +EL NP+S++ N R TL+ +
Sbjct: 13 VSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREXAVELXNPLSQELNCXRQTLLFGGLET 72
Query: 563 ICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEEN 622
+ +NL+RK + LFE Y + ++ Y E ++ + G + W
Sbjct: 73 LSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPE 132
Query: 623 RNIDYFDLKNDLENLFFPIKLN----FLKINNSILHPNRSALIFKKTKNIGFIGEIHPIL 678
F+LK +E + + + LK ++ L+ + + + K +G G + L
Sbjct: 133 EPTSVFELKAVVEQVLCRVGIETGAYTLKTADNDLYASAXEVKTRSGKLLGTFGTVSTEL 192
Query: 679 QQKYDLPLAPIFF 691
+++++ P++F
Sbjct: 193 IKRFEIE-QPVYF 204
>pdb|3BU2|A Chain A, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
pdb|3BU2|B Chain B, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
pdb|3BU2|C Chain C, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
pdb|3BU2|D Chain D, Crystal Structure Of A Trna-Binding Protein From
Staphylococcus Saprophyticus Subsp. Saprophyticus.
Northeast Structural Genomics Consortium Target Syr77
Length = 199
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 56 HPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKY 115
HPD D ++ VD L IVC PN+ G + + + +I +
Sbjct: 104 HPDADKLSVLSVDVATEKLQIVCGAPNVEAG-----QKVVVAKVGAVXPSGXVIKDAELR 158
Query: 116 KIKSYGLLCSEYDLKINN--KNKYLFELPEDAPIGKNFYD 153
+ S G +CS +L + N + K + L +D +G++F++
Sbjct: 159 GVASSGXICSXKELGLPNAPQEKGIXVLSDDYTVGQSFFE 198
>pdb|1WZU|A Chain A, Crystal Structure Of Quinolinate Synthase (Nada)
Length = 300
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 643 LNFLKINNSILHPNRSALIFKKTKNIGFIG--EIHPILQQKYDLPLAPIFFEVDALELQK 700
++F+ IL+P++ LI + ++ IL+ K P AP+ V++ K
Sbjct: 58 VDFMAETAKILNPDKVVLIPSREATCAMANMLKVEHILEAKRKYPNAPVVLYVNSTAEAK 117
Query: 701 RQIPNYIQISKFPNVVRDI---VFIFNKNINLQDVMDTMFFEK----NNNSNCFIIQSIS 753
+ + VV+ + V IF + NL + M +K + +C++ Q +
Sbjct: 118 AYADVTVTSANAVEVVKKLDSDVVIFGPDKNLAHYVAKMTGKKIIPVPSKGHCYVHQKFT 177
Query: 754 LFDKYCGKKLKDNEK 768
L D KKL N K
Sbjct: 178 LDDVERAKKLHPNAK 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,400,066
Number of Sequences: 62578
Number of extensions: 863522
Number of successful extensions: 1977
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 27
length of query: 809
length of database: 14,973,337
effective HSP length: 107
effective length of query: 702
effective length of database: 8,277,491
effective search space: 5810798682
effective search space used: 5810798682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)