Query psy9573
Match_columns 809
No_of_seqs 280 out of 1625
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:05:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00629 pheT phenylalanyl-tRN 100.0 3E-191 6E-196 1712.2 87.1 783 1-809 1-791 (791)
2 TIGR00472 pheT_bact phenylalan 100.0 6E-186 1E-190 1668.7 87.0 785 1-808 1-798 (798)
3 CHL00192 syfB phenylalanyl-tRN 100.0 4E-159 8E-164 1410.9 71.5 668 1-809 1-704 (704)
4 COG0072 PheT Phenylalanyl-tRNA 100.0 4E-138 8E-143 1218.3 60.1 641 147-808 1-650 (650)
5 TIGR00471 pheT_arch phenylalan 100.0 9E-107 2E-111 941.6 50.7 469 161-698 43-550 (551)
6 PRK09616 pheT phenylalanyl-tRN 100.0 4E-105 8E-110 929.2 52.9 469 159-700 40-550 (552)
7 PLN02265 probable phenylalanyl 100.0 2E-103 5E-108 918.0 48.4 480 158-698 63-596 (597)
8 KOG2472|consensus 100.0 2.1E-64 4.5E-69 545.0 29.2 474 158-698 59-577 (578)
9 PF03483 B3_4: B3/4 domain; I 100.0 6.4E-45 1.4E-49 364.0 12.8 174 216-389 1-174 (174)
10 cd00769 PheRS_beta_core Phenyl 100.0 5.1E-42 1.1E-46 350.9 21.7 192 497-698 3-198 (198)
11 PLN02788 phenylalanine-tRNA sy 100.0 2.6E-40 5.6E-45 363.6 35.4 306 476-808 47-402 (402)
12 TIGR00469 pheS_mito phenylalan 100.0 1E-33 2.2E-38 313.0 32.2 298 491-807 39-460 (460)
13 cd00496 PheRS_alpha_core Pheny 100.0 9.7E-34 2.1E-38 293.8 20.2 182 495-700 2-201 (218)
14 smart00873 B3_4 B3/4 domain. T 100.0 4.5E-33 9.8E-38 278.6 18.9 173 217-389 1-174 (174)
15 PRK06253 O-phosphoseryl-tRNA s 100.0 9.6E-32 2.1E-36 299.4 22.3 227 484-727 37-364 (529)
16 TIGR00468 pheS phenylalanyl-tR 100.0 4.6E-30 1E-34 277.0 21.3 194 482-700 60-270 (294)
17 COG0073 ARC1 EMAP domain [Gene 100.0 4.6E-29 1E-33 234.8 10.5 120 25-150 1-122 (123)
18 TIGR02367 PylS pyrrolysyl-tRNA 100.0 1.1E-27 2.3E-32 263.5 20.3 208 470-700 209-428 (453)
19 cd02796 tRNA_bind_bactPheRS tR 99.9 4.6E-27 1E-31 215.3 10.8 102 45-151 1-103 (103)
20 PF01409 tRNA-synt_2d: tRNA sy 99.9 6.9E-25 1.5E-29 230.3 18.9 201 480-700 3-225 (247)
21 PF03147 FDX-ACB: Ferredoxin-f 99.9 8.8E-25 1.9E-29 196.8 12.1 94 710-808 1-94 (94)
22 PRK09537 pylS pyrolysyl-tRNA s 99.9 5E-23 1.1E-27 227.8 20.1 190 489-700 199-392 (417)
23 cd00768 class_II_aaRS-like_cor 99.9 1.3E-21 2.9E-26 200.4 14.9 174 497-685 3-188 (211)
24 PF01588 tRNA_bind: Putative t 99.9 7.3E-23 1.6E-27 184.6 4.8 95 45-150 1-95 (95)
25 KOG2783|consensus 99.8 4.5E-21 9.8E-26 203.4 11.5 173 629-808 229-436 (436)
26 cd02153 tRNA_bindingDomain The 99.8 7.3E-21 1.6E-25 173.1 10.5 93 45-151 1-99 (99)
27 PRK04172 pheS phenylalanyl-tRN 99.8 8E-20 1.7E-24 210.9 20.8 192 489-700 228-466 (489)
28 PF03484 B5: tRNA synthetase B 99.8 5.1E-20 1.1E-24 156.5 6.1 69 408-476 1-70 (70)
29 TIGR02306 RNA_lig_DRB0094 RNA 99.8 2.4E-19 5.2E-24 194.8 10.1 102 45-157 3-118 (341)
30 TIGR00470 sepS O-phosphoseryl- 99.8 4.9E-18 1.1E-22 186.6 19.9 198 484-700 37-329 (533)
31 PRK00488 pheS phenylalanyl-tRN 99.8 1E-17 2.2E-22 181.3 21.3 196 479-700 93-317 (339)
32 smart00874 B5 tRNA synthetase 99.7 2.8E-18 6E-23 146.4 7.1 68 409-476 2-71 (71)
33 cd02800 tRNA_bind_EcMetRS_like 99.7 2.9E-17 6.3E-22 151.0 6.9 95 44-151 10-104 (105)
34 cd02799 tRNA_bind_EMAP-II_like 99.7 9.7E-17 2.1E-21 147.5 10.1 92 44-151 7-104 (105)
35 COG3382 Solo B3/4 domain (OB-f 99.7 2.6E-16 5.5E-21 159.6 13.2 137 232-391 81-219 (229)
36 TIGR00399 metG_C_term methiony 99.7 9.4E-17 2E-21 153.9 7.8 95 43-151 40-136 (137)
37 PRK12267 methionyl-tRNA synthe 99.6 6.3E-16 1.4E-20 185.0 6.6 95 44-151 552-647 (648)
38 PRK00133 metG methionyl-tRNA s 99.6 1.3E-15 2.9E-20 182.6 5.5 93 44-151 577-672 (673)
39 PLN02853 Probable phenylalanyl 99.5 1E-12 2.2E-17 148.0 25.8 195 489-700 216-461 (492)
40 PLN02610 probable methionyl-tR 99.5 8.7E-15 1.9E-19 176.8 10.0 91 44-152 644-742 (801)
41 COG0016 PheS Phenylalanyl-tRNA 99.5 6.1E-13 1.3E-17 143.5 18.9 212 466-700 83-314 (335)
42 PTZ00326 phenylalanyl-tRNA syn 99.5 3.1E-12 6.8E-17 144.9 20.7 195 489-700 224-476 (494)
43 cd02798 tRNA_bind_CsaA tRNA-bi 99.4 6.6E-13 1.4E-17 122.3 6.9 88 44-150 10-106 (107)
44 PRK08655 prephenate dehydrogen 99.2 3.2E-11 7E-16 137.8 10.9 81 711-809 357-437 (437)
45 KOG2241|consensus 99.2 1.9E-11 4.1E-16 125.9 6.8 89 44-151 98-195 (255)
46 COG2517 Predicted RNA-binding 99.2 2.5E-11 5.3E-16 117.3 6.7 103 5-126 85-188 (219)
47 TIGR02222 chap_CsaA export-rel 99.1 3E-10 6.5E-15 104.6 7.3 88 44-151 8-106 (107)
48 PRK10089 tRNA-binding protein; 99.0 1.2E-09 2.5E-14 101.6 7.6 90 44-151 13-111 (112)
49 PHA02142 putative RNA ligase 98.6 7.3E-08 1.6E-12 105.7 8.6 101 45-156 10-124 (366)
50 KOG2784|consensus 98.4 1.8E-06 3.9E-11 92.5 11.1 226 453-695 165-445 (483)
51 COG2024 Phenylalanyl-tRNA synt 98.4 5.6E-07 1.2E-11 96.6 7.3 226 483-725 36-369 (536)
52 COG4937 Predicted regulatory d 98.2 8.1E-06 1.7E-10 76.5 10.0 82 713-808 81-163 (171)
53 PRK00037 hisS histidyl-tRNA sy 96.7 0.01 2.2E-07 67.8 11.8 107 496-612 21-131 (412)
54 cd00773 HisRS-like_core Class 96.7 0.021 4.6E-07 61.1 13.0 131 497-643 6-137 (261)
55 TIGR00442 hisS histidyl-tRNA s 96.5 0.022 4.7E-07 64.8 12.5 132 496-643 17-152 (397)
56 PF00587 tRNA-synt_2b: tRNA sy 96.4 0.027 5.8E-07 56.4 10.8 139 497-646 3-147 (173)
57 PF13393 tRNA-synt_His: Histid 96.1 0.053 1.1E-06 59.5 12.3 109 496-612 13-121 (311)
58 TIGR00443 hisZ_biosyn_reg ATP 96.0 0.066 1.4E-06 59.0 12.2 132 496-643 11-142 (314)
59 CHL00201 syh histidine-tRNA sy 95.8 0.093 2E-06 60.5 12.9 132 496-643 21-157 (430)
60 PRK12293 hisZ ATP phosphoribos 95.7 0.087 1.9E-06 57.2 11.7 119 497-643 23-141 (281)
61 PLN02530 histidine-tRNA ligase 95.7 0.089 1.9E-06 61.6 12.6 132 496-643 87-219 (487)
62 PRK12421 ATP phosphoribosyltra 95.7 0.12 2.7E-06 58.7 13.3 110 496-612 24-134 (392)
63 PRK12292 hisZ ATP phosphoribos 95.6 0.11 2.3E-06 59.2 12.3 133 496-643 20-153 (391)
64 PRK12420 histidyl-tRNA synthet 94.9 0.25 5.4E-06 56.8 12.6 131 496-643 21-154 (423)
65 cd00670 Gly_His_Pro_Ser_Thr_tR 94.1 0.25 5.4E-06 51.6 9.4 139 497-645 6-150 (235)
66 cd00669 Asp_Lys_Asn_RS_core As 93.8 0.59 1.3E-05 50.5 11.6 113 498-641 6-118 (269)
67 PRK12295 hisZ ATP phosphoribos 93.3 1 2.2E-05 50.9 13.1 128 496-643 7-135 (373)
68 PLN02972 Histidyl-tRNA synthet 93.1 0.93 2E-05 55.3 13.0 107 496-612 344-450 (763)
69 cd00771 ThrRS_core Threonyl-tR 92.7 0.92 2E-05 49.7 11.4 135 496-643 33-172 (298)
70 COG0124 HisS Histidyl-tRNA syn 92.2 1.4 3E-05 50.6 12.3 132 496-643 21-156 (429)
71 PRK00413 thrS threonyl-tRNA sy 92.1 0.49 1.1E-05 57.3 9.1 137 496-643 273-413 (638)
72 PRK09616 pheT phenylalanyl-tRN 91.9 0.18 4E-06 59.9 5.0 72 409-480 2-75 (552)
73 PRK09194 prolyl-tRNA synthetas 91.5 1.3 2.8E-05 52.9 11.7 139 496-646 50-193 (565)
74 PF00152 tRNA-synt_2: tRNA syn 91.3 1.6 3.6E-05 48.4 11.4 113 498-640 27-142 (335)
75 PF11734 TilS_C: TilS substrat 91.2 0.68 1.5E-05 39.8 6.5 58 280-337 1-72 (74)
76 cd00779 ProRS_core_prok Prolyl 91.0 0.48 1E-05 50.7 6.5 138 496-646 34-177 (255)
77 cd00772 ProRS_core Prolyl-tRNA 90.4 2.2 4.8E-05 45.9 11.0 139 496-646 35-184 (264)
78 TIGR00418 thrS threonyl-tRNA s 90.0 0.89 1.9E-05 54.3 8.4 136 496-643 203-343 (563)
79 TIGR00409 proS_fam_II prolyl-t 89.6 2.9 6.4E-05 49.9 12.2 136 496-646 50-193 (568)
80 PRK12444 threonyl-tRNA synthet 89.1 1 2.3E-05 54.6 8.1 136 496-644 277-417 (639)
81 PRK12305 thrS threonyl-tRNA sy 88.8 1 2.2E-05 53.9 7.7 137 496-643 209-349 (575)
82 PRK09350 poxB regulator PoxA; 88.4 1.2 2.6E-05 48.9 7.3 115 497-641 9-127 (306)
83 PLN02908 threonyl-tRNA synthet 88.2 1.6 3.5E-05 53.3 9.0 90 496-587 324-416 (686)
84 PRK06462 asparagine synthetase 87.1 3 6.4E-05 46.5 9.5 119 498-641 35-154 (335)
85 PTZ00417 lysine-tRNA ligase; P 86.7 3 6.4E-05 49.9 9.7 112 498-641 258-370 (585)
86 cd00770 SerRS_core Seryl-tRNA 86.7 2.1 4.6E-05 46.8 7.9 138 496-646 55-198 (297)
87 cd00775 LysRS_core Lys_tRNA sy 86.6 5.4 0.00012 44.4 11.2 112 498-641 13-125 (329)
88 PRK00484 lysS lysyl-tRNA synth 85.6 6 0.00013 46.5 11.4 111 498-641 177-289 (491)
89 cd00777 AspRS_core Asp tRNA sy 85.2 6.3 0.00014 42.8 10.6 111 498-640 6-117 (280)
90 PTZ00385 lysyl-tRNA synthetase 84.5 5.5 0.00012 48.1 10.5 112 498-641 238-350 (659)
91 TIGR00499 lysS_bact lysyl-tRNA 84.2 4 8.7E-05 48.0 9.1 111 498-641 177-289 (496)
92 PRK12445 lysyl-tRNA synthetase 83.7 4.8 0.0001 47.4 9.4 112 498-641 189-301 (505)
93 PRK12325 prolyl-tRNA synthetas 83.6 4.7 0.0001 46.7 9.3 139 495-645 49-192 (439)
94 PRK12294 hisZ ATP phosphoribos 83.6 8.1 0.00017 41.8 10.5 87 496-585 10-96 (272)
95 COG1190 LysU Lysyl-tRNA synthe 83.5 1.4 3.1E-05 50.7 4.8 113 498-641 185-297 (502)
96 smart00874 B5 tRNA synthetase 83.5 1.2 2.5E-05 37.6 3.2 34 1-34 4-37 (71)
97 PLN02265 probable phenylalanyl 83.3 1.4 3.1E-05 52.9 5.0 70 409-478 2-96 (597)
98 PRK03932 asnC asparaginyl-tRNA 82.7 8.8 0.00019 44.6 11.0 113 498-641 138-257 (450)
99 PRK14799 thrS threonyl-tRNA sy 81.7 4.1 8.8E-05 48.4 7.9 90 496-587 171-263 (545)
100 cd00776 AsxRS_core Asx tRNA sy 81.4 8.9 0.00019 42.5 10.1 112 498-641 29-140 (322)
101 cd00778 ProRS_core_arch_euk Pr 81.1 4.6 0.0001 43.3 7.5 141 496-647 35-185 (261)
102 cd00774 GlyRS-like_core Glycyl 80.3 5 0.00011 42.9 7.4 128 496-643 35-167 (254)
103 PLN02502 lysyl-tRNA synthetase 80.1 8.5 0.00018 45.8 9.8 112 498-641 234-346 (553)
104 TIGR00462 genX lysyl-tRNA synt 76.8 5.3 0.00011 43.9 6.4 115 497-641 5-122 (304)
105 TIGR00458 aspS_arch aspartyl-t 73.1 20 0.00044 41.3 10.2 112 498-641 138-249 (428)
106 PLN02850 aspartate-tRNA ligase 73.0 13 0.00028 44.1 8.7 113 498-641 230-342 (530)
107 PRK05431 seryl-tRNA synthetase 71.7 18 0.00038 41.8 9.3 181 452-646 128-317 (425)
108 TIGR00459 aspS_bact aspartyl-t 71.6 25 0.00055 42.1 10.7 113 498-641 143-255 (583)
109 PRK05159 aspC aspartyl-tRNA sy 70.8 23 0.0005 41.0 10.0 112 498-641 141-253 (437)
110 PRK00960 seryl-tRNA synthetase 70.7 13 0.00029 43.7 8.0 150 498-657 228-412 (517)
111 PF09840 DUF2067: Uncharacteri 70.3 29 0.00063 35.5 9.4 62 409-475 69-130 (190)
112 TIGR00457 asnS asparaginyl-tRN 69.5 16 0.00034 42.6 8.3 113 498-641 141-260 (453)
113 TIGR00408 proS_fam_I prolyl-tR 68.7 16 0.00034 42.8 8.2 91 496-586 41-138 (472)
114 PF03484 B5: tRNA synthetase B 68.6 3.8 8.3E-05 34.7 2.3 34 2-35 5-38 (70)
115 TIGR00471 pheT_arch phenylalan 68.0 5.1 0.00011 47.8 4.0 67 409-476 2-71 (551)
116 TIGR00414 serS seryl-tRNA synt 66.6 27 0.00058 40.2 9.3 138 496-646 176-319 (418)
117 PRK02983 lysS lysyl-tRNA synth 65.9 20 0.00043 46.3 8.8 111 498-641 775-887 (1094)
118 KOG1936|consensus 64.7 32 0.0007 39.1 9.0 128 499-643 80-208 (518)
119 PRK00476 aspS aspartyl-tRNA sy 64.4 37 0.00081 40.9 10.3 112 498-641 146-258 (588)
120 PRK12820 bifunctional aspartyl 62.7 38 0.00083 41.5 9.9 111 498-639 161-271 (706)
121 PLN02903 aminoacyl-tRNA ligase 60.7 53 0.0011 39.9 10.6 112 498-640 208-320 (652)
122 PLN02678 seryl-tRNA synthetase 60.2 50 0.0011 38.4 10.0 139 496-646 177-324 (448)
123 TIGR00415 serS_MJ seryl-tRNA s 57.4 81 0.0018 37.2 10.9 140 509-658 240-413 (520)
124 PTZ00401 aspartyl-tRNA synthet 56.2 43 0.00093 40.0 8.8 113 498-641 218-330 (550)
125 PF03319 EutN_CcmL: Ethanolami 55.3 33 0.00071 30.3 5.7 52 45-97 5-62 (83)
126 PF11148 DUF2922: Protein of u 49.7 26 0.00056 29.6 4.1 28 771-798 14-41 (69)
127 COG0072 PheT Phenylalanyl-tRNA 48.2 11 0.00024 45.9 2.2 173 162-352 43-235 (650)
128 TIGR02312 HpaH 2-oxo-hepta-3-e 47.8 71 0.0015 34.5 8.1 72 665-739 55-134 (267)
129 TIGR02703 carboxysome_A carbox 43.7 1E+02 0.0022 27.1 6.9 51 45-96 5-56 (81)
130 PRK08661 prolyl-tRNA synthetas 41.1 48 0.001 38.9 6.0 176 496-685 47-243 (477)
131 PF13592 HTH_33: Winged helix- 41.0 20 0.00042 29.4 2.0 28 416-443 12-39 (60)
132 COG0298 HypC Hydrogenase matur 40.8 61 0.0013 28.3 4.9 40 47-93 6-49 (82)
133 TIGR02704 carboxysome_B carbox 40.7 1.2E+02 0.0027 26.6 6.9 49 45-93 5-53 (80)
134 cd01614 EutN_CcmL Ethanolamine 39.4 1.3E+02 0.0028 26.7 6.9 49 45-93 5-59 (83)
135 KOG1885|consensus 36.0 24 0.00051 40.5 2.2 152 498-687 230-390 (560)
136 TIGR03220 catechol_dmpE 2-oxop 34.1 1.6E+02 0.0034 31.5 8.2 73 666-739 51-129 (255)
137 TIGR03218 catechol_dmpH 4-oxal 33.6 1.3E+02 0.0027 32.4 7.3 73 666-739 59-137 (263)
138 PLN02320 seryl-tRNA synthetase 33.1 51 0.0011 38.8 4.5 134 497-645 237-379 (502)
139 PRK04173 glycyl-tRNA synthetas 32.6 3.3E+02 0.0071 31.8 11.0 86 546-644 157-247 (456)
140 PF08536 Whirly: Whirly transc 31.2 74 0.0016 30.8 4.4 78 5-92 47-127 (139)
141 PRK15448 ethanolamine cataboli 31.1 1.9E+02 0.004 26.3 6.7 52 45-97 5-62 (95)
142 COG3705 HisZ ATP phosphoribosy 31.0 66 0.0014 36.7 4.8 108 496-612 20-128 (390)
143 PRK03991 threonyl-tRNA synthet 30.1 73 0.0016 38.6 5.3 90 496-587 230-323 (613)
144 PLN02837 threonine-tRNA ligase 29.2 64 0.0014 39.1 4.6 90 496-587 250-343 (614)
145 PRK10413 hydrogenase 2 accesso 28.3 1.5E+02 0.0033 26.1 5.6 43 47-93 6-53 (82)
146 CHL00192 syfB phenylalanyl-tRN 28.1 30 0.00065 42.6 1.6 66 412-477 2-77 (704)
147 TIGR00268 conserved hypothetic 27.9 1.9E+02 0.0042 30.7 7.5 90 341-442 143-241 (252)
148 TIGR00268 conserved hypothetic 27.6 39 0.00085 36.0 2.2 91 424-515 142-242 (252)
149 PRK10660 tilS tRNA(Ile)-lysidi 26.5 1.1E+02 0.0025 35.3 5.9 64 271-335 350-427 (436)
150 PF09409 PUB: PUB domain; Int 25.5 1.1E+02 0.0024 26.8 4.4 46 404-452 25-70 (87)
151 PLN02603 asparaginyl-tRNA synt 24.9 4.8E+02 0.01 31.4 10.7 118 498-641 231-371 (565)
152 PF14578 GTP_EFTU_D4: Elongati 24.7 2.4E+02 0.0052 24.9 6.1 47 31-97 24-71 (81)
153 PF11324 DUF3126: Protein of u 23.7 1.7E+02 0.0038 24.5 4.7 18 655-672 26-43 (63)
154 PF10246 MRP-S35: Mitochondria 23.4 3E+02 0.0065 25.4 6.6 54 37-98 18-76 (104)
155 PRK11342 mhpD 2-keto-4-penteno 23.0 2E+02 0.0044 30.8 6.6 72 666-739 55-133 (262)
156 COG4079 Uncharacterized protei 22.9 84 0.0018 33.2 3.4 48 45-92 221-271 (293)
157 PF09866 DUF2093: Uncharacteri 22.4 69 0.0015 24.5 2.0 17 83-99 2-18 (42)
158 COG4576 CcmL Carbon dioxide co 21.9 3.8E+02 0.0082 23.8 6.6 48 45-93 5-59 (89)
159 KOG0556|consensus 21.6 1.6E+02 0.0034 33.6 5.4 76 499-588 234-309 (533)
160 PHA02131 hypothetical protein 20.3 1E+02 0.0022 25.0 2.6 49 110-186 17-65 (70)
161 COG0017 AsnS Aspartyl/asparagi 20.2 4.9E+02 0.011 30.2 9.1 111 498-641 139-249 (435)
No 1
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=2.7e-191 Score=1712.19 Aligned_cols=783 Identities=39% Similarity=0.669 Sum_probs=728.3
Q ss_pred CccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCC
Q psy9573 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNI 80 (809)
Q Consensus 1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga 80 (809)
|+||++||+||+|+++|++||+++||++|+|||++++++..+++++||+|++++|||+||||++|+||+|++.+||||||
T Consensus 1 M~is~~WL~~~v~~~~~~~~l~~~Lt~~G~EVE~v~~~~~~~~~i~vg~i~~~~~hp~~~~L~v~~v~~g~~~~~iv~ga 80 (791)
T PRK00629 1 MKFSLSWLKEYVNPDISSEELAEALTMIGLEVEGVEDVAAGLSGVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGA 80 (791)
T ss_pred CcCCHHHHHHHhCCCCCHHHHHHHHHhcCcceeeEEecccCCCCEEEEEEEEEEecCCCCeEEEEEEEcCCeEEEEEeCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999779999999
Q ss_pred CcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCce
Q psy9573 81 PNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNL 160 (809)
Q Consensus 81 ~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D~ 160 (809)
+|+++|++|+||++||+||+ |++|+++++||++|+||+||++||||+++++||++||+++++|+++.++++|+|+
T Consensus 81 ~n~~~g~~v~~a~~G~~l~~-----~~~i~~~~~~Gv~S~GMlcs~~ELGl~~~~~GI~~L~~~~~~G~~~~~~l~l~D~ 155 (791)
T PRK00629 81 PNVRAGDKVPVALPGAVLPG-----GFKIKKAKLRGVESEGMLCSASELGLSDDHDGIIELPEDAPVGTDAREYLGLDDT 155 (791)
T ss_pred ccccCCCEEEEEccCCCccC-----CceEeeeecCCeEEchhcccHhHcCCCcCCCCeEECCCCCCCCccHHHHhCCCCe
Confidence 99999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEecccccccceEEEEEecccCCCCCHHHHHH
Q psy9573 161 KFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKI 240 (809)
Q Consensus 161 ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~lq~ 240 (809)
++||++|||||||||++||||||||+++.+++.|.+..........++|.+++++.||+|++++|+||++..+||+|||+
T Consensus 156 iiei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~c~~y~~~~i~~v~~~~~sp~wlq~ 235 (791)
T PRK00629 156 VIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPATIDDKLPVEIEDPDLCPRYAGRVIKGVKNIAPSPLWLQE 235 (791)
T ss_pred EEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccCCceEEEecCCCCCccEEEEEEECCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999886432222112357788877789999999999999933899999999
Q ss_pred HHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecCCcEEEEeCCceeEeccc
Q psy9573 241 RLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGI 320 (809)
Q Consensus 241 rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D~~~~lslagi 320 (809)
||+++|++++|++||+||||||+||||+||||+|||+++|+||.++++|+|++||+++++|+++++||+|+++++|+|||
T Consensus 236 rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~~i~vr~~~~~e~~~~l~~~~~~l~~~~lvi~d~~~~lsl~gi 315 (791)
T PRK00629 236 RLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEGEKLTTLDGKERTLDPEDLVIADDKKPLALAGV 315 (791)
T ss_pred HHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCCceEEEECCCCCEEEecCCceecCCCCcEEEEeCCCeEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCcccccc-ceE
Q psy9573 321 INGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKIS-QID 399 (809)
Q Consensus 321 ~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~-~~~ 399 (809)
|||++|+|+++|++||||+|+|+|.+||+|||+|||+||||||||||+||+.+..|++||++||.+++||+ +. ...
T Consensus 316 ~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~t~as~RfeRGvdp~~~~~al~~a~~ll~e~~~g~---i~~~~~ 392 (791)
T PRK00629 316 MGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFERGVDPALTLLALERATALILELGGGE---VVEGVV 392 (791)
T ss_pred ecCccccccCCCcEEEEEEcccChHHHHHHHHHhCCCchhhhheccCCCHHHHHHHHHHHHHHHHHHcCCe---EeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877 43 333
Q ss_pred eeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeC-CEEEEeCCCccCCCCcchhhhhhhhhhhccCC
Q psy9573 400 DQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKN-NIFLVIPPAHRFDLEIEEDIIEEIIRIYGFEN 478 (809)
Q Consensus 400 ~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~-~~~~v~vP~~R~DI~~~~DliEEIaR~yGydn 478 (809)
+.++.+. ++.|.++.++|+++||++|+.++|.++|++|||+++.++ +.|.|+||+||+||.+++||||||||+|||||
T Consensus 393 ~~~~~~~-~~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf~~~~~~~~~~~V~vPs~R~DI~~~~DliEEI~RiyGyd~ 471 (791)
T PRK00629 393 DVYPLPK-EPTITLRLERINRLLGTEISDEEIVDILKRLGFEVTEVDGDGLTVTVPSWRFDIEIEEDLVEEVARIYGYDN 471 (791)
T ss_pred ecCCCCC-CeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEecCCCeEEEECCCCccccCcccHHHHHHHHHhCccc
Confidence 3344444 789999999999999999999999999999999997665 67999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHH
Q psy9573 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGS 558 (809)
Q Consensus 479 ip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpg 558 (809)
||+++|......+..+..+++.+++|+.|+++||+|++||||++++.+..|++. ...++|+||+|+|+++||+||+||
T Consensus 472 i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~--~~~i~l~NPis~e~~~lR~SLlp~ 549 (791)
T PRK00629 472 IPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLN--PEPLLLLNPISEELSVMRTSLLPG 549 (791)
T ss_pred CcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCC--CCeEEEeCCCchHHHHHHHhhHHH
Confidence 999988643333456667888999999999999999999999999887777554 357999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHH
Q psy9573 559 LVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF 638 (809)
Q Consensus 559 LL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll 638 (809)
||+++++|++|++.++++||+|+||.+++ ..+.|..+||++++|.....+|..+ +.+|||++||+|++++
T Consensus 550 LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---------~~~~e~~~la~~~~g~~~~~~w~~~-~~~df~~~Kg~le~ll 619 (791)
T PRK00629 550 LLEAVAYNLNRGNKDVALFEIGRVFLPDG---------DLPREPEHLAGVLTGNRVEESWGGK-RPVDFFDLKGDVEALL 619 (791)
T ss_pred HHHHHHHHHhCCCCCEeEEeeeeeeCCCC---------CCCcchhEEEEEEECCCcccccccc-CCCCHHHHHHHHHHHH
Confidence 99999999999999999999999997542 1356889999999997777889877 7799999999999999
Q ss_pred HhcCC---eeee-ccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcc--cCCccccCCCC
Q psy9573 639 FPIKL---NFLK-INNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKR--QIPNYIQISKF 712 (809)
Q Consensus 639 ~~lgi---~~~~-~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~--~~~~~~~~skf 712 (809)
..+|+ +|.+ ..+++|||||||.|+++|+.+|++|+|||+++++|+|+.|+|+|||||+.|... ..++|+|+|+|
T Consensus 620 ~~l~~~~~~~~~~~~~~~~hPg~sA~I~~~g~~iG~iG~lhP~v~~~~~l~~~v~~~Ei~l~~l~~~~~~~~~~~~~skf 699 (791)
T PRK00629 620 EALGLPEVEFVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKVLKKLDLPGRTYVFELDLDALLEAARKLPKYKPISKF 699 (791)
T ss_pred HHcCCCceeEeecCCCcCcCCceEEEEEECCEEEEEEEEECHHHHHHcCCCCCEEEEEEEHHHhhhhhcccCCCCCCCCC
Confidence 99987 4666 677889999999999999999999999999999999999999999999999742 33479999999
Q ss_pred CCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHH
Q psy9573 713 PNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAI 792 (809)
Q Consensus 713 P~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~ 792 (809)
|+++|||||++|+++++++|.+.|++.+++ +|++|++||+|+|+++++|+||+|||++||+++|||||+||++++
T Consensus 700 P~v~RDls~vv~~~v~~~~i~~~i~~~~~~-----ll~~v~lfDvY~g~~i~~gkkSla~rl~~r~~~rTLtd~eI~~~~ 774 (791)
T PRK00629 700 PAVRRDLALVVDEDVPAADILKAIKKAGGK-----LLESVELFDVYEGKGIGEGKKSLAFRLTFQDPDRTLTDEEINAAM 774 (791)
T ss_pred CCccccEEEEECCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEeCCCCCCCCceEEEEEEEEECCCCCCCHHHHHHHH
Confidence 999999999999999999999999998888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCC
Q psy9573 793 NALINSVCKNFNAKLRN 809 (809)
Q Consensus 793 ~~ii~~L~~~~~a~lR~ 809 (809)
++|++.|+++|||+||+
T Consensus 775 ~~ii~~L~~~~~~~LR~ 791 (791)
T PRK00629 775 DKIVAALEEKFGAELRG 791 (791)
T ss_pred HHHHHHHHHHhCcEecC
Confidence 99999999999999995
No 2
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=6.2e-186 Score=1668.68 Aligned_cols=785 Identities=35% Similarity=0.608 Sum_probs=722.2
Q ss_pred CccCHHHHhhccCC-CCCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEe
Q psy9573 1 MQIPENWLRTIINP-KLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVC 78 (809)
Q Consensus 1 M~is~~WL~e~v~~-~~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ 78 (809)
|+||++||++|+|+ +++++||+++||++|+|||++++++..+++++||+|+++++||++|||++|+||+|+ +.+||||
T Consensus 1 M~is~~wL~~~v~~~~~~~~~l~~~lt~~G~EVE~v~~~~~~~~~~~vg~i~~~~~hp~~~~L~~~~vd~g~~~~~~Iv~ 80 (798)
T TIGR00472 1 MKISLKWLREYVPLSEIDNEEIAEALTSIGLEVEAVIPFSKPLKGVVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVC 80 (798)
T ss_pred CcCCHHHHHHHhCccCCCHHHHHHHHHhcCcceeeEEecccCcCCEEEEEEEEEEecCCCCcEEEEEEEcCCCceEEEEe
Confidence 99999999999998 899999999999999999999999987899999999999999999999999999996 6899999
Q ss_pred CCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccC
Q psy9573 79 NIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFN 158 (809)
Q Consensus 79 ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~ 158 (809)
||+|+++|++|+||+|||+||+ |++|+++++||++|+||+||+.|||++++++||++||+++++|+++.++++++
T Consensus 81 ga~n~~~g~~V~va~~Ga~l~~-----~~~i~~~~~~Gv~S~GMlcs~~elg~~~~~~gi~~l~~~~~~G~~~~~~l~l~ 155 (798)
T TIGR00472 81 GAPNVEAGKKVAVALPGAKLPN-----GLKIKKSKLRGVESEGMLCSEDELGLDEKSDGIIVLDEDAPLGTDIAEYLGLD 155 (798)
T ss_pred CCccccCCCEEEEEccCCCccC-----CceEeeeecCCeeechhcccHhHcCCCCCCCCEEEcCCCCCCCccHHHHhCCC
Confidence 9999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCcccc--CCCCCcceeEEecccccccceEEEEEecccCCCCCHH
Q psy9573 159 NLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKIT--LPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPK 236 (809)
Q Consensus 159 D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~--~~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~ 236 (809)
|+++||++|||||||||++||||||||+++++++.|.+... .......+.|.+++.+.||+|++++|+||++ .+||+
T Consensus 156 D~i~ei~itpNR~D~lS~~GiARelaa~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~y~~~~i~~v~~-~~sp~ 234 (798)
T TIGR00472 156 DDIIEVSITPNRGDCLSILGIARELAALFDLPLETPVPFEPETTETIDEGFKIEIEDPEVCPFYLGRVIKGVKV-KPSPL 234 (798)
T ss_pred CeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccccCCceEEEecCCCCCccEEEEEEeCCCC-CCChH
Confidence 99999999999999999999999999999999887744321 1112345778888778999999999999998 78999
Q ss_pred HHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCC-EEEEEcCCCCeEEecCCeeeeecCCcEEEEeCCcee
Q psy9573 237 WMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGE-LNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKII 315 (809)
Q Consensus 237 ~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~-i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D~~~~l 315 (809)
|||+||+++|++|+|++||+|||+|+++|||+|+||+|||+++ +.||.++++|+|++||++++.|+++++||+|+++++
T Consensus 235 wl~~~L~~~g~~~iN~ivDi~Nyv~l~~g~pih~yD~dki~~~~~~vr~~~~~e~~~~L~~~~~~l~~~~lvi~d~~~~l 314 (798)
T TIGR00472 235 WLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNIEVRSAKEGESFTTLDGKERELKKGDLVIADDKKPL 314 (798)
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHhCccceeeeHhHcCCCeEEEEEcCCCCEEEccCCeEEecCCCcEEEEECCceE
Confidence 9999999999999999999999999999999999999999987 555999999999999999999999999999999999
Q ss_pred EecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCccccc
Q psy9573 316 SLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKI 395 (809)
Q Consensus 316 slagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~ 395 (809)
|+||||||++|+|+++|++||||+|+|+|..||+|||+|||+||||||||||+||+.+..|++|+++||.++|||+ +
T Consensus 315 si~gi~~~~~s~i~~~T~~i~le~a~f~~~~ir~t~~~l~l~t~as~RferGvd~~~~~~al~~~~~ll~e~~~~~---~ 391 (798)
T TIGR00472 315 AIAGVMGGKESGVTDTTTNIFLESAYFNPERIRKTARRLGISTDSSYRFERGVDPELTELALDRALNLILEIFGGE---V 391 (798)
T ss_pred EEeeeecCccccccCCccEEEEEEEeeCHHHHHHHHHHhCCCchhhhhhhcCCCHHHHHHHHHHHHHHHHHHhCCe---e
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887 4
Q ss_pred cc-eEeeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhh
Q psy9573 396 SQ-IDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIY 474 (809)
Q Consensus 396 ~~-~~~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~y 474 (809)
.. ..+.+.....++.|.++.++|+++||++|+.++|.++|++|||+++.+++.|.|+||+||+||.+++||||||||+|
T Consensus 392 ~~~~~~~~~~~~~~~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf~~~~~~~~~~V~vP~~R~DI~~~~DliEEI~R~y 471 (798)
T TIGR00472 392 ISVVSDVYKEKAKEKKISLRIKKLNKILGISLSDEEVRDILKRLGFKVEKQKDGWEVTVPSYRHDITIEEDLIEEIARIY 471 (798)
T ss_pred cceeeeccCCCCCCeEEEecHHHHHHHhCCccCHHHHHHHHHHCCCEEEecCCeEEEECCCCccccccchhhHhhhhhhh
Confidence 32 33333344567889999999999999999999999999999999986667899999999999999999999999999
Q ss_pred ccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchh
Q psy9573 475 GFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRST 554 (809)
Q Consensus 475 Gydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~S 554 (809)
||||||+++|.........+..+...+++|+.|+++||+|++||+|+|++....+........++|.||+|+|+++||+|
T Consensus 472 Gydni~~~~p~~~~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPis~e~s~lR~S 551 (798)
T TIGR00472 472 GYDNIPAEPLSVSSKLNKNNENYLLLRKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPLSNERSVLRTS 551 (798)
T ss_pred CcccCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCCchHHHHHHHh
Confidence 99999999887544444445555556899999999999999999999997766553221112699999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHH
Q psy9573 555 LIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDL 634 (809)
Q Consensus 555 LlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~l 634 (809)
|+||||+++++|++|+.+++++||+|+||.+++. .+.|..+||++++|.....+|+.++.++|||++||+|
T Consensus 552 LlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~---------~~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~l 622 (798)
T TIGR00472 552 LLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL---------GVKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDV 622 (798)
T ss_pred hHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC---------CcchhhEEEEEEECCCCcccccCCCCcCChHHHHHHH
Confidence 9999999999999999999999999999965321 1468899999999987778898877789999999999
Q ss_pred HHHHHhcCCe----eee-ccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhccc--CCccc
Q psy9573 635 ENLFFPIKLN----FLK-INNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQ--IPNYI 707 (809)
Q Consensus 635 e~ll~~lgi~----~~~-~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~--~~~~~ 707 (809)
++++..+|+. +.+ ..+++|||||||.|+++|+.||++|+|||+++++|+|+.|+|+|||||+.|.+.. .++|+
T Consensus 623 e~ll~~l~~~~~~~~~~~~~~~~~hpg~sA~I~~~~~~iG~iG~lhP~v~~~~~l~~~v~~~Ei~l~~l~~~~~~~~~~~ 702 (798)
T TIGR00472 623 ESLLELLGLSDDVYFKNTAENEELHPGQSATIYLKGKKIGFIGELHPEIAKKYDLKEPTFVAELDLDRLLESLKKVPKYR 702 (798)
T ss_pred HHHHHHcCCCcceEEeecCCCCCCCCCcEEEEEECCEEEEEEEEECHHHHHHcCCCCCeEEEEEEHHHHhhhhcccCCcC
Confidence 9999999874 444 5567899999999999999999999999999999999999999999999986422 24799
Q ss_pred cCCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHH
Q psy9573 708 QISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNI 787 (809)
Q Consensus 708 ~~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~e 787 (809)
++|+||+++|||||++|++++++++.+.|++.+++ ++++|++||+|+|+++++|+||+|||++||+++||||++|
T Consensus 703 ~~sk~P~~~RDls~~v~~~v~~~~i~~~i~~~~~~-----ll~~v~lfDvY~g~~i~~gkkSlt~rl~~~~~~rTLtd~e 777 (798)
T TIGR00472 703 PISKFPAVTRDISFLVPKDVPANEIIKLIKKSGLE-----LLEEVELFDVYEGKNIGEGKKSLALRLVLRDKERTLTDEE 777 (798)
T ss_pred CCCCCCCcceeEEEEECCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEeCCCCCCCCceEEEEEEEEECCCCCCCHHH
Confidence 99999999999999999999999999999998788 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccC
Q psy9573 788 INNAINALINSVCKNFNAKLR 808 (809)
Q Consensus 788 v~~~~~~ii~~L~~~~~a~lR 808 (809)
|++++++|++.|+++||++||
T Consensus 778 i~~~~~~i~~~l~~~~g~~lR 798 (798)
T TIGR00472 778 INKIVEKVLNLLKEKLGAELR 798 (798)
T ss_pred HHHHHHHHHHHHHHHhCcEeC
Confidence 999999999999999999998
No 3
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=3.6e-159 Score=1410.86 Aligned_cols=668 Identities=30% Similarity=0.477 Sum_probs=604.5
Q ss_pred CccCHHHHhhccCCC-CCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeC
Q psy9573 1 MQIPENWLRTIINPK-LSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCN 79 (809)
Q Consensus 1 M~is~~WL~e~v~~~-~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~g 79 (809)
|+||++|||+||+++ ++++.||+.||++|++||++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------------------------- 40 (704)
T CHL00192 1 MKISLKWLKELINLENIDLDTLINKLTLAGFEVEDILSVK---------------------------------------- 40 (704)
T ss_pred CcccHHHHHHhcCcccCCHHHHHhhccCCCccccceeeec----------------------------------------
Confidence 999999999999998 999999999999999999884331
Q ss_pred CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCc
Q psy9573 80 IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNN 159 (809)
Q Consensus 80 a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D 159 (809)
.++++|
T Consensus 41 --------------------------------------------------------------------------~~~~~D 46 (704)
T CHL00192 41 --------------------------------------------------------------------------IGGESD 46 (704)
T ss_pred --------------------------------------------------------------------------cCCCCC
Confidence 112379
Q ss_pred eeEEeecCCCcccccChHHHHHHHHHhcCCC-CCCCCccccCCCCCcceeEEeccc--ccccceEEEEEecccCCCCCHH
Q psy9573 160 LKFVIKLTPNRGDCLSLLGIAREISILSNTP-LKLLNTKITLPNYKEILPVKISAI--DLCGRFSGRIIRGINPKALTPK 236 (809)
Q Consensus 160 ~ileieitpNR~D~ls~~GiARelaa~~~~~-~~~p~~~~~~~~~~~~~~v~i~~~--~~cp~y~~~vi~~v~v~~~sp~ 236 (809)
++|||++||||||||||+||||||||+++++ ++.|............++|.+++. +.||+|++++|+||++ ++||.
T Consensus 47 ~iiei~iTpNR~D~lS~~GiARElaA~~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~~~c~~y~~~~i~~v~v-~~SP~ 125 (704)
T CHL00192 47 IILDISSTANRSDVLSIQGLSREISALFNSDPIKLKYYNPSISWFDKLKNLISNDSSKLNCSMFIAVIIENIEI-KDSPK 125 (704)
T ss_pred EEEEEeCCCChHHHHHhHHHHHHHHHHhCCCcccCCCcccCccccCCceeEEEecCCccCCCcEEEEEEeCCCC-CCChH
Confidence 9999999999999999999999999999999 887611111111133466777755 6899999999999999 79999
Q ss_pred HHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCC-----CE--EEEEcCCCCeEEecCCeeeeecCCcEEEE
Q psy9573 237 WMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISG-----EL--NIRWGNIGETIKISNDLIIKIDKNIGIIS 309 (809)
Q Consensus 237 ~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~-----~i--~vr~a~~~e~~~~L~~~~~~l~~~~lvi~ 309 (809)
|||+||.++|+|||||+||||||||||+|||+||||+|||+| .| +||.|.++|+|++|||++++|+++++||+
T Consensus 126 Wl~~rL~~~Gir~iNniVDiTNyVmle~GqPlHafD~dki~g~~~~~~i~~~Vr~a~~ge~~~~Ld~~e~~L~~~~LvI~ 205 (704)
T CHL00192 126 WLQNRLSSSGFKSLNNLTDIQNYIMLETGQPIEIYDLDKIYSKNTTSSLALSSKFALQKSSFIASNSKNIELENNILVVQ 205 (704)
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHHhCCCchhhhHHhhcCCCccCcceeEEEEcCCCCEEEeeCCCEEEcCCCCEEEE
Confidence 999999999999999999999999999999999999999987 36 99999999999999999999999999999
Q ss_pred eCCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhC
Q psy9573 310 DNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICG 389 (809)
Q Consensus 310 D~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~g 389 (809)
|+++|+||||||||++|+|+++|+|||||||+|+|..||+|||+|||+||||||||||+||+.+..|++||++||.++||
T Consensus 206 d~~k~lalAGVmGg~~S~V~~~T~nIlLEsA~F~p~~Irktsr~l~l~TdaS~RfERgvdp~~~~~al~ra~~Li~e~~g 285 (704)
T CHL00192 206 ANNVIISIAGIISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLGLRTDRSIRYEKSLKNDNLLEAYYRLVSLLRILNP 285 (704)
T ss_pred eCCceeeecceecCCcceecCCccEEEEEEEEeCHHHHHHHHHHhCCcchHHhhhhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-cccccc-ceEeeeecCCcceEEEeehhhhhcccCc-----c---cCHHHHHHHHHhcCCEEEEe-CC-EEEEeCCCcc
Q psy9573 390 T-SSSKIS-QIDDQIINIPVRKEIKVRSERVIKILGI-----K---LTNQEISNIFIRLKFHFIQK-NN-IFLVIPPAHR 457 (809)
Q Consensus 390 g-~~~~~~-~~~~~~~~~~~~~~I~l~~~~i~~~lG~-----~---i~~~~i~~iL~~Lgf~v~~~-~~-~~~v~vP~~R 457 (809)
| + +. .+.+ ++.+..++.|.++.++|+++||. + ++.++|.++|++|||+++.+ ++ .|.|+||+||
T Consensus 286 g~~---~~~~~~~-~~~~~~~~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~~~~~~~V~vP~~R 361 (704)
T CHL00192 286 KLK---CKFHFIY-KKIKNSSRRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDSLKLNWEVLIPSYR 361 (704)
T ss_pred CCE---Eccceec-CCCCCCCeeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecCCCceEEEEcCCCC
Confidence 9 7 44 3444 44455678999999999999998 8 99999999999999999755 44 7999999999
Q ss_pred C-CCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCC
Q psy9573 458 F-DLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNY 536 (809)
Q Consensus 458 ~-DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~ 536 (809)
+ ||++++||||||||+|||||||+++|.. ...+..++.+++.+++|+.|+++||+|++||||++++. + . ..
T Consensus 362 ~~DI~~~~DliEEIaRiyGYdnI~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~---~--~--~~ 433 (704)
T CHL00192 362 KDDIVREIDVIEEIARIYGFNNFLSKLPNI-KFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQES---F--S--KN 433 (704)
T ss_pred chhcCchhHHHHHHHHhcCcccCccccccc-ccCCCCCHHHHHHHHHHHHHHhCCCceEecccccChhh---c--C--CC
Confidence 8 9999999999999999999999998864 33345566788899999999999999999999999974 2 2 34
Q ss_pred cEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCC-CC
Q psy9573 537 PIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPL-LE 615 (809)
Q Consensus 537 ~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~-~~ 615 (809)
.++|+||+|+|+++||+||+||||+++++|++|++.++++||+|+||.+++. ...|..+++++++|.. ..
T Consensus 434 ~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~---------~~~e~~~la~~~~g~~~~~ 504 (704)
T CHL00192 434 EIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS---------SIIEETELAGGIFGGIDIR 504 (704)
T ss_pred cEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc---------cccccceEEEEEECCCcCc
Confidence 6999999999999999999999999999999999999999999999975431 1257889999999975 56
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhcCC--eeee----ccCCCCcCccEEEEEE-CCEEEEEEEeecHHHHHhCCCCCce
Q psy9573 616 PQWGEENRNIDYFDLKNDLENLFFPIKL--NFLK----INNSILHPNRSALIFK-KTKNIGFIGEIHPILQQKYDLPLAP 688 (809)
Q Consensus 616 ~~w~~~~~~~df~dlKg~le~ll~~lgi--~~~~----~~~~~~hPgrsA~I~~-~g~~iG~iGelhP~vl~~~~i~~~v 688 (809)
.+|..+.+.+||||+||+|++++..+|+ .|.+ ..+++|||||||.|++ +|+.||++|+|||+++++|+|+.|+
T Consensus 505 ~~w~~~~~~~dF~d~Kg~le~ll~~l~i~~~~~~~~~~~~~~~~hPgrsA~I~~~~g~~iG~iG~lhP~v~~~~~l~~~v 584 (704)
T CHL00192 505 SSWSEKAQSLNWFEAKGIIENFFQKLNLPIYWKKYSDLDEKINFHPYCTSEIFLSNGQKIGIFGQLHPLLANKLNLNTEI 584 (704)
T ss_pred cccCCCCCccCHHHHHHHHHHHHHHCCCcEEEEeccccccCcCCCCCcEEEEEEECCcEEEEEEEECHHHHHHcCCCCCe
Confidence 8898888889999999999999999997 5554 3568899999999999 7899999999999999999999999
Q ss_pred EEEEeehHHHhccc--C--CccccCCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCC
Q psy9573 689 IFFEVDALELQKRQ--I--PNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLK 764 (809)
Q Consensus 689 ~~~El~l~~L~~~~--~--~~~~~~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~ 764 (809)
++|||||+.|.... . .+|+|+|+||+++|||||++|+++++++|+++|++.+++ ++++|++||+|+|++++
T Consensus 585 ~~~Ei~l~~l~~~~~~~~~~~~~~~skfP~v~RDia~vv~~~i~~~~i~~~i~~~~~~-----ll~~v~lfDvY~g~~i~ 659 (704)
T CHL00192 585 YLFEINLDILQYSIQQNNLISYQPYSSYPKIIRDLSFIIKKSISISKIKELIYQNGDN-----LLESITLFDYYKGKSIP 659 (704)
T ss_pred EEEEEEHHHhhhhhccccccccCCCCCCCCccceEEEEECCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEecCCCCC
Confidence 99999999996422 1 369999999999999999999999999999999998888 99999999999999999
Q ss_pred CCceEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCcccCC
Q psy9573 765 DNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN 809 (809)
Q Consensus 765 ~gkkSl~~rl~~~~~~rTLt~~ev~~~~~~ii~~L~~~~~a~lR~ 809 (809)
+|+||+|||++||+.+|||||+||++++++|++.|+++|||+||+
T Consensus 660 ~gkkSla~~l~~~~~~~TLtd~ei~~~~~~i~~~l~~~~~a~lR~ 704 (704)
T CHL00192 660 NGHTSLGLRLTFQSENKTLTNEEIDRIQQNLQKVLEKKLNAEIRE 704 (704)
T ss_pred CCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeCC
Confidence 999999999999999999999999999999999999999999995
No 4
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-138 Score=1218.30 Aligned_cols=641 Identities=35% Similarity=0.589 Sum_probs=597.1
Q ss_pred CCCchhhhcccCceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCcc--ccCCCCCcceeEEecc-cccccceEEE
Q psy9573 147 IGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTK--ITLPNYKEILPVKISA-IDLCGRFSGR 223 (809)
Q Consensus 147 ~G~~~~~~~~l~D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~--~~~~~~~~~~~v~i~~-~~~cp~y~~~ 223 (809)
.|++..++++|+|.++++++||||+||+|++|+|||+||.++.++..|+.. .........+.+.+++ +..||+|.++
T Consensus 1 ~g~~~~~~~~L~d~i~e~~~tpnr~D~ls~~GiarE~aa~~~~~~~~~~~~d~~~~~~~~~~~~v~ie~~~~~~~~~~~~ 80 (650)
T COG0072 1 MPTIVREYLDLDDLIIEISITPNRADCLSMLGIARELAAEYDLKLEFPKIRDLESAEGLARKIFLEIEAGKYACPRYAGR 80 (650)
T ss_pred CCchhhhhhhhccceeeccCCCCHHHhhccccceeehhhhcCCcccccccccccccccccceeEeecccccccCCccceE
Confidence 478889999999999999999999999999999999999999999888763 1122223367788877 5899999999
Q ss_pred EEecccCCCCCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecC
Q psy9573 224 IIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDK 303 (809)
Q Consensus 224 vi~~v~v~~~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~ 303 (809)
+|+|+++..+||+|||.||..+|++|+|++||+|||||+++|||+|+||++++.+++.||.++.+|++++||++++++..
T Consensus 81 ~i~~v~~~~~sP~~~~~~l~~~gir~in~lVDitnyv~l~~Gqp~h~~d~~~~~~~i~vr~a~~~e~~~~ld~~~~~l~~ 160 (650)
T COG0072 81 VIKGVKVNAPSPLWLQARLRGVGIRPINNLVDITNYVHLELGQPRHAFDIGKIDGKIPVRYAKEGETLVFLDGKERELLT 160 (650)
T ss_pred EEECcccCCCCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCcchHhhhhhccCceEEEEccCCCceEecCCcceeeCC
Confidence 99999966899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHH
Q psy9573 304 NIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNL 383 (809)
Q Consensus 304 ~~lvi~D~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~l 383 (809)
+++||+|+.+++|+||+|||++|.++++|+++++|+|+|+|..||+++|+++++|++|+|||||+|++.+..|+++|+++
T Consensus 161 ~~~vi~d~~~~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~al~~~~~l 240 (650)
T COG0072 161 GDLVIADHEKGLALAGVMGGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEKALNRATTL 240 (650)
T ss_pred CCEEEEeCCCceeeeeeeeccccCCCccceeeeeeeEecChHHHHhhcccccCCcceeEEeecCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCccccccceEeeee--cCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCC
Q psy9573 384 IIEICGTSSSKISQIDDQII--NIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLE 461 (809)
Q Consensus 384 l~~~~gg~~~~~~~~~~~~~--~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~ 461 (809)
|+++|||+ ++.+...+. ..++++.+.++.++|+++||.+++.++|.++|+||||.++..++.|.|++|+||+||+
T Consensus 241 l~e~~gg~---v~~~~~~~~~~~~~~~~~i~~~~~~i~~llG~~ls~eei~~iL~rLg~~~~~~~~~~~V~vPs~R~DI~ 317 (650)
T COG0072 241 LAEICGGE---VSSVVIVGGDEKLTPPRKIELRLERINRLLGLELSAEEIEKILKRLGFKVEVKGDGLTVTVPSYRVDIL 317 (650)
T ss_pred HHHhcCCe---eeeEEEecCCcCCCCCceEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeeEecCCcEEEeCCCCccccc
Confidence 99999998 765554432 2222789999999999999999999999999999999998887889999999999999
Q ss_pred cchhhhhhhhhhhccCCCCCCCCCccccCC-CCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCC-cEE
Q psy9573 462 IEEDIIEEIIRIYGFENIPISLPITVSKIS-PIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNY-PIE 539 (809)
Q Consensus 462 ~~~DliEEIaR~yGydnip~~~p~~~~~~~-~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~i~ 539 (809)
+++||||||||+|||||||+++|....... ..+..+.+.+.+|+.|+++||+|++||+|++++.+..++.. .. .++
T Consensus 318 ~e~DliEEv~r~yGy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~--~~~~~~ 395 (650)
T COG0072 318 IEADLIEEVARIYGYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLE--NDEALE 395 (650)
T ss_pred chhHHHHHHHHHhCcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccC--CCcceE
Confidence 999999999999999999999998765333 35667888999999999999999999999999998888654 33 899
Q ss_pred eeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCC
Q psy9573 540 LLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWG 619 (809)
Q Consensus 540 L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~ 619 (809)
|+||+|+|+++||+||+||||+++++|++|+++++++||+|.||..++. ...|..+++++++|.....+|+
T Consensus 396 l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~---------~~~~~~~~~~l~~g~~~~~~w~ 466 (650)
T COG0072 396 LANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEE---------AERETRHLAGLAAGLAGEESWQ 466 (650)
T ss_pred ecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCc---------ccchhHHHHHHhhccccccccc
Confidence 9999999999999999999999999999999999999999999998754 2467789999999966699999
Q ss_pred CCCCcCCHHHHHHHHHHHHHhcCC--eeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHH
Q psy9573 620 EENRNIDYFDLKNDLENLFFPIKL--NFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALE 697 (809)
Q Consensus 620 ~~~~~~df~dlKg~le~ll~~lgi--~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~ 697 (809)
.+ +.+|||++||+|+++++.+|+ +|.+.++++|||||||.|+++++.||++|+|||+++++|||+.|+|+||||++.
T Consensus 467 ~~-~~v~f~d~Kg~ve~ll~~lg~~~~~~~~~~~~~hpgrsA~I~~~~~~iG~iGeiHP~vl~~~dl~~~~~~fEi~l~~ 545 (650)
T COG0072 467 GK-RPVDFYDAKGDLEALLEALGVEYEFEPAEHPAFHPGRSAAIYLNKEVIGFIGELHPEVLKEFDLPGPVYVFEIDLDA 545 (650)
T ss_pred cC-CCcCHHHHHHHHHHHHHHhCCceEEEEccCCCccCCceEEEEECCEEEEEEeeeCHHHHHhcCCCCCeEEEEEehhh
Confidence 88 899999999999999999995 677788889999999999999889999999999999999999999999999999
Q ss_pred HhcccCCccccCCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEe
Q psy9573 698 LQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQ 777 (809)
Q Consensus 698 L~~~~~~~~~~~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~ 777 (809)
+.....+.|+|+|+||+++|||||+||+++++++|.++|++++++ +|++|+|||+|+ +++++|+||+|||++||
T Consensus 546 l~~~~~~~~~~~s~~pa~~RDia~~v~~~v~~~~i~~~i~~~~~~-----~l~~v~lfDvy~-~~~~~~~ks~a~~~~~~ 619 (650)
T COG0072 546 LLKRKKPAYKPISKFPAVRRDIALVVDEDVPAGDIVKAIKKAGGK-----LLESVNLFDVYQ-KGLGEGKKSLAIRLTFQ 619 (650)
T ss_pred hccccccccCCCCCCCcccceeEEEecCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEee-cccCCCceEEEEEEEEE
Confidence 988778899999999999999999999999999999999999999 999999999999 99999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q psy9573 778 DPKKTLKNNIINNAINALINSVCKNFNAKLR 808 (809)
Q Consensus 778 ~~~rTLt~~ev~~~~~~ii~~L~~~~~a~lR 808 (809)
+++|||||+||++++++++++|+++||++||
T Consensus 620 ~~~rTLtdeev~~~~~~~~~~l~~~~~~~lr 650 (650)
T COG0072 620 DPERTLTDEEVNALVNKIVEALKEKFGAELR 650 (650)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 9999999999999999999999999999998
No 5
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=9.4e-107 Score=941.63 Aligned_cols=469 Identities=22% Similarity=0.319 Sum_probs=415.7
Q ss_pred eEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEeccc--ccccceEEEEEecccCCC---CCH
Q psy9573 161 KFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAI--DLCGRFSGRIIRGINPKA---LTP 235 (809)
Q Consensus 161 ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~--~~cp~y~~~vi~~v~v~~---~sp 235 (809)
++||++||||||||||+||||||||++|.+++.|.+.. . ...++|.++++ +.||||+|++|+||+++. +||
T Consensus 43 i~eieiTpNR~D~lS~~GiARel~a~~~~~~~~p~~~~---~-~~~~~v~v~~~~~~~cp~y~~~vi~gv~~~~~~~~Sp 118 (551)
T TIGR00471 43 EIKVEFNPNRPDLLSVEGLARSLRGYLGIEKGLKSYDS---K-KGDVKLTVDESVLQIRPFITGAVVKGIILNDKVLESL 118 (551)
T ss_pred eEEEEcCCCCchhhhHHHHHHHHHHHhCCCCCCcceec---C-CCceEEEECCcccccCCeEEEEEEeCCccChhHHhhH
Confidence 59999999999999999999999999999998875531 1 33577888765 789999999999999933 899
Q ss_pred HHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEE-EcCCCCeEEecCCeeeeecCC----------
Q psy9573 236 KWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIR-WGNIGETIKISNDLIIKIDKN---------- 304 (809)
Q Consensus 236 ~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr-~a~~~e~~~~L~~~~~~l~~~---------- 304 (809)
+|||+||+++|+||+|++ ++||||+|||+++|+|| .+.++|+|+|||++ ++|+++
T Consensus 119 ~wlq~rL~~~g~R~in~l-------------~ihafD~dki~~~i~vr~~a~~ge~f~~Ld~~-~~L~~~~~~~~~~~~~ 184 (551)
T TIGR00471 119 IELQEKLHWNIGRNRRKV-------------AIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSD-QEMTPDEILEEHPKGI 184 (551)
T ss_pred HHHHHHHHHhhCccccee-------------eEEeccHHhCCCCeEEEEECCCCCEEEECCCC-CccCHHHHHhhCcccc
Confidence 999999999999999982 49999999999999999 99999999999998 999888
Q ss_pred -----------cEEEEeC-CceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHh
Q psy9573 305 -----------IGIISDN-FKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSK 372 (809)
Q Consensus 305 -----------~lvi~D~-~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~ 372 (809)
++||+|+ ++|+|+||||||++|+|+++||||||||| |+||+.
T Consensus 185 ~y~~l~~~~~~~~vI~D~~~~~lslaGImgg~~s~V~~~T~nIllE~A--------------------------g~D~~~ 238 (551)
T TIGR00471 185 RYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRNLLIDVT--------------------------GTDKTA 238 (551)
T ss_pred hhhhhhcCCCceeEEEeCCCCEEeeCCccCCCceEecCCCceEEEEEe--------------------------cCCHHH
Confidence 9999998 79999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhCCccccccc--eEe---eeec-CCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeC
Q psy9573 373 TIKCLERVTNLIIEICGTSSSKISQ--IDD---QIIN-IPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKN 446 (809)
Q Consensus 373 ~~~al~~~~~ll~~~~gg~~~~~~~--~~~---~~~~-~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~ 446 (809)
+..|+++|++||.++|||+ +.. +.+ .+.. +..++.|.++.++|+++||++|+.++|.++|++|||+++..+
T Consensus 239 ~~~al~~a~~li~~~~~g~---~~~~~v~~~~~~~~~p~~~~~~i~~~~~~i~~~lG~~l~~~ei~~iL~~Lg~~v~~~~ 315 (551)
T TIGR00471 239 VEITLNIACTMFADRGDGR---ITVVEVERPDEHLGQPNLAPRFMEVSVEYINSLLGLNLSADEIAHSLKKMRLDAVQSD 315 (551)
T ss_pred HHHHHHHHHHHHHHhCCCc---eeEEEEEECCCcccCCCCccceEEecHHHHHHHhCCCCCHHHHHHHHHHhCCCeEecC
Confidence 9999999999999999988 532 433 2333 335688999999999999999999999999999999997666
Q ss_pred CEEEEeCCCccCCCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH
Q psy9573 447 NIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE 526 (809)
Q Consensus 447 ~~~~v~vP~~R~DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~ 526 (809)
+.|.|+||+||.||++++||||||||+|||||||+++|.. ...+..++.+++.+++|+.|+++||+|++||||+|++.+
T Consensus 316 ~~~~v~vP~~R~DI~~~~DliEEIaR~yGyd~I~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~ 394 (551)
T TIGR00471 316 EKLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLI-NTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVN 394 (551)
T ss_pred CcEEEEcCCCccccCchhHHHHHHHHHhCcccCCccCCCc-cccCCcChHHHHHHHHHHHHHhCCceeeccceEccHHHH
Confidence 6799999999999999999999999999999999988865 333455667888999999999999999999999999776
Q ss_pred -hhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccce--e
Q psy9573 527 -KDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKEL--K 603 (809)
Q Consensus 527 -~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~--~ 603 (809)
+.++.. ..+.|+|.||+|+|+++||+||+||||+++++|+ |+..++++||+|+||.+++.. ...|+ .
T Consensus 395 ~~~~~~~-~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-~~~~~~~lFEiG~Vf~~~~~~--------~~~e~~~~ 464 (551)
T TIGR00471 395 FKRMRIE-DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-HHELPQKIFEIGDVVVKDDKS--------ETRSRVVT 464 (551)
T ss_pred HHHhccC-CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc-cCCCCeeEEEEEEEEEcCCcc--------ccccceee
Confidence 555322 1346999999999999999999999999999999 667789999999999765321 11345 8
Q ss_pred EEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC--eeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHh
Q psy9573 604 KIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL--NFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQK 681 (809)
Q Consensus 604 ~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi--~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~ 681 (809)
+++++++|. .+|||++||+|++++..+|+ .|.+..+++|||||+|.|+++|+.+|++|+|||+++++
T Consensus 465 ~l~~~~~g~-----------~~df~d~Kg~ve~ll~~l~i~~~~~~~~~~~~hpgrsa~I~~~g~~iG~iG~ihP~v~~~ 533 (551)
T TIGR00471 465 KLAVGITHS-----------EANFNEIKSIVAALARELGIEYEIEESEHPSFIPGRGAKIVFEGKAIGHFGEIHPEVLTN 533 (551)
T ss_pred EEEEEEECC-----------CCCHHHHHHHHHHHHHHcCCceEEeecCCCccCCCceEEEEECCcEEEEEEEECHHHHHh
Confidence 999999993 57999999999999999997 67777788999999999999999999999999999999
Q ss_pred CCCCCceEEEEeehHHH
Q psy9573 682 YDLPLAPIFFEVDALEL 698 (809)
Q Consensus 682 ~~i~~~v~~~El~l~~L 698 (809)
|+|+.|+++|||||+.|
T Consensus 534 ~~i~~~v~~~Ei~l~~l 550 (551)
T TIGR00471 534 FELEFPVSAFEVNIEVF 550 (551)
T ss_pred CCCCCceEEEEEEehhc
Confidence 99999999999999876
No 6
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=3.8e-105 Score=929.21 Aligned_cols=469 Identities=23% Similarity=0.353 Sum_probs=415.7
Q ss_pred ceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEeccc--ccccceEEEEEecccCCCCC--
Q psy9573 159 NLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAI--DLCGRFSGRIIRGINPKALT-- 234 (809)
Q Consensus 159 D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~--~~cp~y~~~vi~~v~v~~~s-- 234 (809)
|+++||++||||||||||+||||||||+++.+++.|..... ...++|.+++. +.||||+|++|+||++ ++|
T Consensus 40 D~ileieiTpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~----~~~~~v~v~~~~~~~cp~y~~~~i~~v~v-~~s~~ 114 (552)
T PRK09616 40 DDEIKIEFNPDRPDLLSVEGLARALRGFLGIETGLPKYEVK----DSDVKVEVDEEVPEIRPYIAGAVVRGVKL-DDEAL 114 (552)
T ss_pred CceEEEEcCCCchhhhhHHHHHHHHHHHhCCCCCCCceeec----CCceEEEECCCccccCCeEEEEEEECCcc-CHHHH
Confidence 77899999999999999999999999999999988755321 13467888765 7999999999999999 799
Q ss_pred --HHHHHHHHHHCCCCcccHhHHHHHHHHHHhCC-----CCCcccccccCCCEEEEEcCCCCeEEecCCeeeeec-----
Q psy9573 235 --PKWMKIRLEDSGQKLVSVLHDITNYVMLELGI-----PINIFDLSKISGELNIRWGNIGETIKISNDLIIKID----- 302 (809)
Q Consensus 235 --p~~lq~rL~~~g~~~in~iVDitNyv~le~Gq-----Plh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~----- 302 (809)
|+|||+||+++ +|| |+|+||+|||+++|+||.++++|.|++||+ +++++
T Consensus 115 ~~P~wlq~rL~~~------------------~Gq~r~~~pi~~~Dldki~~~i~~r~a~~~e~f~~L~~-~~~~~~~e~~ 175 (552)
T PRK09616 115 KSLIQLQEKLHWT------------------IGRKRKKVAIGIHDLDKIKPPIYYKAVDPDEKFVPLGF-DEEMTLREIL 175 (552)
T ss_pred HhHHHHHHHHHHH------------------hccccccceeEeecHHHCCCCeEEEEeCCCCeEeeCCC-CceeCHHHHH
Confidence 99999999997 666 999999999999999999999999999999 65565
Q ss_pred -------------C---CcEEEEeCCc-eeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccc
Q psy9573 303 -------------K---NIGIISDNFK-IISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFE 365 (809)
Q Consensus 303 -------------~---~~lvi~D~~~-~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~Rfe 365 (809)
+ +++||+|+++ ++|+||||||++|+|+++|||||||+|
T Consensus 176 ~~~~~~~~y~~L~~~~~~~~vI~D~~~~~lsl~gi~~~~~s~vt~~Tkni~lE~a------------------------- 230 (552)
T PRK09616 176 EKHPKGKEYGHLLKDFDRYPLIVDSEGNVLSFPPIINSELTRVTEGTRNLFIDVT------------------------- 230 (552)
T ss_pred hhCcccceehhhccCCCCcceEEcCCCCEEecCCccCCCceEEcCCCcEEEEEec-------------------------
Confidence 4 7899999987 999999999999999999999999999
Q ss_pred cCCCHHhHHHHHHHHHHHHHHHhCCccccccceEeeee-----cC-CcceEEEeehhhhhcccCcccCHHHHHHHHHhcC
Q psy9573 366 RGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQII-----NI-PVRKEIKVRSERVIKILGIKLTNQEISNIFIRLK 439 (809)
Q Consensus 366 rgvD~~~~~~al~~~~~ll~~~~gg~~~~~~~~~~~~~-----~~-~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lg 439 (809)
|+||+.+..|++++++++.++| |+ +..+.+.+. .+ ..++.|.++.++|+++||.+|+.++|.++|++||
T Consensus 231 -g~d~~~~~~al~~~~~ll~~~~-g~---v~~~~~~~~~~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg 305 (552)
T PRK09616 231 -GTDLEAVLLALNIIATALAERG-GT---IESVKVIYPDGELTTPDLTPRTREVSVEYINKLLGIDLSAEEIIELLERMR 305 (552)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhC-CE---EEEEEEEeCCCCEeCCCCCceEEEecHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 7899999999999999999997 77 655555554 33 4668899999999999999999999999999999
Q ss_pred CEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeecc
Q psy9573 440 FHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYS 519 (809)
Q Consensus 440 f~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitys 519 (809)
|+++..++.|.|+||+||+||++++||||||||+|||||||+++|. ....+..++.+++.+++|+.|+++||+|++|||
T Consensus 306 f~~~~~~~~~~v~vP~~R~DI~~~~DliEEiaR~yGyd~i~~~~p~-~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tys 384 (552)
T PRK09616 306 YDAEIGDDKVKVTVPPYRVDILHEVDVIEDVAIAYGYNNLEPELPK-VFTIGRLHPIEKLERAIRDLMVGLGFQEVMNFT 384 (552)
T ss_pred CCcEecCCeEEEEeCCCcccccccchHHHHHHHHhCcccCCccCCC-CccCCCCChHHHHHHHHHHHHHhCCcceeccce
Confidence 9997666789999999999999999999999999999999999887 333345666788999999999999999999999
Q ss_pred ccChHH-HhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCC
Q psy9573 520 FIEDSL-EKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSG 598 (809)
Q Consensus 520 f~s~~~-~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~ 598 (809)
|++++. .+.++.......++|.||+|+|+++||+||+||||+++++|+ |+..++++||+|+||.+++.+ ...
T Consensus 385 ~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~-~~~~~~~lFEiG~Vf~~~~~~------~~~ 457 (552)
T PRK09616 385 LTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK-HREYPQKIFEIGDVVLIDEST------ETG 457 (552)
T ss_pred EechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhcc-CCCCCeeEEEeeEEEecCCcc------ccC
Confidence 999977 565543211146999999999999999999999999999999 566779999999999875421 124
Q ss_pred ccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC--eeeeccCCCCcCccEEEEEECCEEEEEEEeecH
Q psy9573 599 YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL--NFLKINNSILHPNRSALIFKKTKNIGFIGEIHP 676 (809)
Q Consensus 599 ~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi--~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP 676 (809)
+.|..+++++++|. ++|||++||+|++++..+|+ .|.+..+++|||||||.|+++|+.||++|+|||
T Consensus 458 ~~e~~~l~~~~~g~-----------~~df~dlKg~ve~ll~~lgi~~~~~~~~~~~~hPg~sa~I~~~g~~iG~iG~lhP 526 (552)
T PRK09616 458 TRTERKLAAAIAHS-----------EASFTEIKSVVQALLRELGIEYEVEESEHPSFIPGRCADILVNGKKIGVIGEIHP 526 (552)
T ss_pred cchhhEEEEEEECC-----------CCCHHHHHHHHHHHHHHcCCeEEEecCCCCcccCCceEEEEECCEEEEEEEEECH
Confidence 57899999999994 57999999999999999997 677777789999999999999999999999999
Q ss_pred HHHHhCCCCCceEEEEeehHHHhc
Q psy9573 677 ILQQKYDLPLAPIFFEVDALELQK 700 (809)
Q Consensus 677 ~vl~~~~i~~~v~~~El~l~~L~~ 700 (809)
+++++|+|+.||++|||||+.|..
T Consensus 527 ~v~~~~~i~~~v~~~Eidl~~l~~ 550 (552)
T PRK09616 527 EVLENFGIEVPVVAFEIDLEALLK 550 (552)
T ss_pred HHHHhcCCCCceEEEEEEHHHhhc
Confidence 999999999999999999999864
No 7
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=2.4e-103 Score=917.97 Aligned_cols=480 Identities=20% Similarity=0.309 Sum_probs=421.4
Q ss_pred CceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEe--cccccccceEEEEEecccCCC---
Q psy9573 158 NNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKI--SAIDLCGRFSGRIIRGINPKA--- 232 (809)
Q Consensus 158 ~D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i--~~~~~cp~y~~~vi~~v~v~~--- 232 (809)
+|++++|++|||||||||++||||||+|++|.++ .|.+..........++|.+ +..+.||||+|++|+||+++.
T Consensus 63 ~d~i~eieitpNR~Dlls~~GiARel~a~~g~~~-~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 141 (597)
T PLN02265 63 EEVIYKIDVPANRYDLLCLEGLARALRVFLGTEP-IPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARY 141 (597)
T ss_pred CceEEEEEeCCCcHHHhhHHHHHHHHHHHhCCCC-CCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCcccc
Confidence 5999999999999999999999999999999888 7766432211124467777 556789999999999999943
Q ss_pred CCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCC-CeEEecCCe--------------
Q psy9573 233 LTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIG-ETIKISNDL-------------- 297 (809)
Q Consensus 233 ~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~-e~~~~L~~~-------------- 297 (809)
+||+|||+|||++|.|++| +|||+| ||+|||+++|+||.++++ ++|+|||++
T Consensus 142 ~Sp~~lQerL~~~g~R~r~-~VdIgn------------~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~ 208 (597)
T PLN02265 142 NSFIDLQDKLHQNICRRRT-LVAIGT------------HDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKS 208 (597)
T ss_pred CCHHHHHHHHHHhcCCcce-EEEEee------------ccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhccc
Confidence 8999999999999999999 999999 999999999999999999 899999998
Q ss_pred eeeec---------CCcEEEEeCCce-eEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccC
Q psy9573 298 IIKID---------KNIGIISDNFKI-ISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERG 367 (809)
Q Consensus 298 ~~~l~---------~~~lvi~D~~~~-lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~Rferg 367 (809)
+++|. +.++||+|++++ +|+||||||++|+|+++|||||||+| |
T Consensus 209 ~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslagIing~~S~It~~TknIfIE~a--------------------------~ 262 (597)
T PLN02265 209 DMKLKKFLHIIENSPVFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECT--------------------------A 262 (597)
T ss_pred CcccccccccccCCCCceEEEeCCCCEEEeCCeeCCCccEecCCCcEEEEEEe--------------------------c
Confidence 77777 889999999985 99999999999999999999999999 5
Q ss_pred CCHHhHHHHHHHHHHHHHHHhCCccccccc--eE------eeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcC
Q psy9573 368 IDFSKTIKCLERVTNLIIEICGTSSSKISQ--ID------DQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLK 439 (809)
Q Consensus 368 vD~~~~~~al~~~~~ll~~~~gg~~~~~~~--~~------~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lg 439 (809)
+||+.+..|+++++++|.++|||. +.+.. +. +.++. ..++.|.++.++|+++||++|+.++|.++|++||
T Consensus 263 ~D~~~~~~al~~~~~ll~e~~~~~-~~i~~v~v~~~~~~~~~~p~-~~~~~i~~~~~~i~~~lG~~l~~~ei~~iL~~l~ 340 (597)
T PLN02265 263 TDLTKAKIVLNTMVTMFSEYCARK-FEVEPVEVVYPDGKSTVYPD-LSVRTMEVDLSYINSSIGVSLDAEEVASLLNKMQ 340 (597)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCC-ceEEEEEEEccCCceEeccC-CcCceEEeeHHHHHHHhCCCCCHHHHHHHHHHCC
Confidence 999999999999999999998875 22333 22 22333 5568899999999999999999999999999999
Q ss_pred CEEEE---eCCEEEEeCCCccCCCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEee
Q psy9573 440 FHFIQ---KNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVI 516 (809)
Q Consensus 440 f~v~~---~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evi 516 (809)
|+++. +++.|.|+||+||+||.|++||||||||+|||||||+++|.. ...+...+.+++.+++|+.|+++||+|++
T Consensus 341 ~~~~~~~~~~~~~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~-~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~ 419 (597)
T PLN02265 341 LQAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKS-MTVGKQQPLNQFSDLLRAEVAMAGFTEVL 419 (597)
T ss_pred CCeEecccCCCceEEEcCCccccccchhhhhhhhHheeccccCCccCCCc-ccCCCCCHHHHHHHHHHHHHHHCCceeee
Confidence 99965 335699999999999999999999999999999999998875 33345666788999999999999999999
Q ss_pred eccccChHH-HhhhcCCC-CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCC
Q psy9573 517 NYSFIEDSL-EKDFSQNI-NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPF 594 (809)
Q Consensus 517 tysf~s~~~-~~~~~~~~-~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~ 594 (809)
||+|+|++. ...++... ....|+|+||+|+|+++||+||+||||+++++|++|+. ++++||+|+||.+++..
T Consensus 420 t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~-p~klFEiG~V~~~~~~~----- 493 (597)
T PLN02265 420 TWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPK-PIKLFEVSDVVLLDESK----- 493 (597)
T ss_pred ceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCC-CeeEEEeEeEEecCCcc-----
Confidence 999999976 55553221 12469999999999999999999999999999999999 79999999999875421
Q ss_pred ccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC---------ee--eeccCCCCcCccEEEEEE
Q psy9573 595 TVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL---------NF--LKINNSILHPNRSALIFK 663 (809)
Q Consensus 595 ~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi---------~~--~~~~~~~~hPgrsA~I~~ 663 (809)
..+..|.++||++++|. .+|||++||+|+++|..+|+ .| ++..+++|||||||.|++
T Consensus 494 -~~~~~e~~~la~~~~g~-----------~~~f~~ikg~le~ll~~l~i~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~ 561 (597)
T PLN02265 494 -DVGARNSRRLAALYCGT-----------TSGFEVIHGLVDRIMEVLGIPFVEIGDNNGYYVEPSNEPEYFPGRQASIIY 561 (597)
T ss_pred -cCCcchhhEEEEEEECC-----------CCCHhhHHHHHHHHHHHcCCcccccccCceEEEeecCCccccCCceEEEEE
Confidence 12346888999999994 37899999999999999998 46 566788999999999999
Q ss_pred CCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHH
Q psy9573 664 KTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALEL 698 (809)
Q Consensus 664 ~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L 698 (809)
+|+.||++|+|||+++++|+|+.|+++|||||+.|
T Consensus 562 ~g~~iG~iGelhP~vl~~f~l~~pv~~~Eidl~~l 596 (597)
T PLN02265 562 KGKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPL 596 (597)
T ss_pred CCeEEEEEEEECHHHHHHCCCCCceEEEEEEhHHh
Confidence 99999999999999999999999999999999976
No 8
>KOG2472|consensus
Probab=100.00 E-value=2.1e-64 Score=544.99 Aligned_cols=474 Identities=22% Similarity=0.308 Sum_probs=400.5
Q ss_pred CceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCC--CcceeEEecccccccceEEEEEecccCCCC--
Q psy9573 158 NNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNY--KEILPVKISAIDLCGRFSGRIIRGINPKAL-- 233 (809)
Q Consensus 158 ~D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~--~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~-- 233 (809)
+...+.+++.+||+|++|..|+++.+..+. .+...|.++...... ...+.|..+..+.+|++++++|+||+.+.+
T Consensus 59 e~~~ykidipANrydllC~egl~qalrvf~-~~~~~p~yk~~~~s~t~~~k~~v~~~t~qIRP~~v~aVir~v~l~~~ds 137 (578)
T KOG2472|consen 59 EEVRYKIDIPANRYDLLCLEGLAQALRVFP-RETEFPSYKLQDFSSTKRQKLIVKPETSQIRPFAVCAVIRNVSLDPPDS 137 (578)
T ss_pred cceeeehhcccccccccchHHHHHHHHhcc-ccCCCCcceeeccccccceEEEEcccccccchHHHHHHHhcCccCchhh
Confidence 456799999999999999999999997754 577788886543321 234556666778999999999999999633
Q ss_pred --CHHHHHHHHHHC--CCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCC-eEEecCCe-eeee------
Q psy9573 234 --TPKWMKIRLEDS--GQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGE-TIKISNDL-IIKI------ 301 (809)
Q Consensus 234 --sp~~lq~rL~~~--g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e-~~~~L~~~-~~~l------ 301 (809)
|.+.+|++||++ --|.+- .+|.||||.++|++.|+.-.++| +|.|||.. +++-
T Consensus 138 y~sFIdlQdKLHqnicrnRtLv---------------AiGTHDLDt~qgPf~Y~Al~peei~f~PLNqtre~~~~eL~~~ 202 (578)
T KOG2472|consen 138 YKSFIDLQDKLHQNICRNRTLV---------------AIGTHDLDTIQGPFEYEALPPEEIKFKPLNQTREVTASELMSF 202 (578)
T ss_pred hHhHHhHHHHHHHHHHhhcccc---------------ccccccchhccCCeeeeeeChhhcCcccchhhhcccccccccc
Confidence 568999999996 334454 58999999999999999888887 99999974 2211
Q ss_pred ----------------cCCcEEEEeCC-ceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCccccccc
Q psy9573 302 ----------------DKNIGIISDNF-KIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRF 364 (809)
Q Consensus 302 ----------------~~~~lvi~D~~-~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~Rf 364 (809)
++-++||-|.+ .++|+|||++|+.|+++.+|+|||+|++
T Consensus 203 y~~d~~l~rYlhII~~sPvypvi~Ds~~~V~SlPPIiNsd~Skitl~TknIfievT------------------------ 258 (578)
T KOG2472|consen 203 YKRDMHLKRYLHIIENSPVYPVIYDSKGVVCSLPPIINSDHSKITLNTKNIFIEVT------------------------ 258 (578)
T ss_pred ccCccchhhhehhhcCCCccceeeCCCCceEecCCccCcccceeeeccceEEEEee------------------------
Confidence 24668899987 5889999999999999999999999999
Q ss_pred ccCCCHHhHHHHHHHHHHHHHHHhCCccccccceEeeeec-----CC--cceEEEeehhhhhcccCcccCHHHHHHHHHh
Q psy9573 365 ERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIIN-----IP--VRKEIKVRSERVIKILGIKLTNQEISNIFIR 437 (809)
Q Consensus 365 ergvD~~~~~~al~~~~~ll~~~~gg~~~~~~~~~~~~~~-----~~--~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~ 437 (809)
++|...+..+++-.+.+++++|+-+ +.+.++...+.. .| ..+...++.+.+|..+|.+++.+++..+|+|
T Consensus 259 --aTd~~ka~ivl~~~v~lfS~~c~~~-ftiepveIv~~~G~~~l~P~l~~r~~~~~~~~in~~~g~~l~~~~~~~~l~R 335 (578)
T KOG2472|consen 259 --ATDFTKAKIVLNTIVTLFSQQCFLK-FTIEPVEIVCGEGGSILYPQLANRSMTMSIQAINFAIGLNLTIEEQAYYLTR 335 (578)
T ss_pred --eccchhhhcccceeeehhhhhhccC-ccccceEEEcCCCcEEECccccCcceeeehhhhhhhhccCCCHHHHHHHHhh
Confidence 7999999999999999999998866 456655444222 22 2577899999999999999999999999999
Q ss_pred cCCEEEEeC-CEEEEeCCCccCCCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEee
Q psy9573 438 LKFHFIQKN-NIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVI 516 (809)
Q Consensus 438 Lgf~v~~~~-~~~~v~vP~~R~DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evi 516 (809)
|..+.+..+ +.+.|.+|+-|.||.|.|||+||+|.+||||||+.++|.+.+...+ -+..++.+.+|..++.+||+|++
T Consensus 336 M~L~a~v~~~~~l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~lP~~~~~~~~-~plNkl~d~lR~e~a~ag~~E~l 414 (578)
T KOG2472|consen 336 MYLKAKVIGNGNLEVKIPPTRADILHACDIVEDAAIAYGYNNIQMTLPASNTIAKP-FPLNKLTDILRIEVAAAGFTEAL 414 (578)
T ss_pred hheeeEecCCCceEEecCCchhhhhhhhhhhhHHHHHhccccccccCcchhcccCc-cchHHHHHHHHHHHHHhhhhhhe
Confidence 999987644 3599999999999999999999999999999999999987664443 34677999999999999999999
Q ss_pred eccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCcc
Q psy9573 517 NYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTV 596 (809)
Q Consensus 517 tysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~ 596 (809)
||.|+|.++. ..+...+|.|.||.+-|++++|+||+||||++++.|.+...+ +|+||+++|...|++. +
T Consensus 415 ~~~LcS~de~----~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP-~klFEisDvv~~D~~~------e 483 (578)
T KOG2472|consen 415 TFTLCSRDEN----VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLP-IKLFEISDVVFKDSST------E 483 (578)
T ss_pred eeeeeccccC----CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCCc-eeEEEeeeEEEecccc------c
Confidence 9999999872 211246899999999999999999999999999999998876 9999999999988753 5
Q ss_pred CCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe---e-eeccCCCCcCccEEEEEECCEEEEEEE
Q psy9573 597 SGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN---F-LKINNSILHPNRSALIFKKTKNIGFIG 672 (809)
Q Consensus 597 ~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~---~-~~~~~~~~hPgrsA~I~~~g~~iG~iG 672 (809)
.+.++.+|||++.+| ....|..++|.|..+|+.-++. | +..+.+ |.|||||.|++.|+.||.+|
T Consensus 484 ~ga~N~R~l~A~y~g-----------~~~gfE~i~Glld~~l~~~~~~~~Y~i~~~~~~-yfpgr~A~v~~~g~~iG~~G 551 (578)
T KOG2472|consen 484 VGARNERHLAAVYCG-----------KTSGFEIIHGLLDQLLNVPPIRDSYYIEADEDP-YFPGRCAKVIVEGKVIGKIG 551 (578)
T ss_pred ccccchheeeeeecC-----------CCccHHHHHHHHHHHhcCCccccceEEecCcCC-cCCCcceEEEEcCceeeeec
Confidence 678899999999999 4568999999999887765542 3 344556 88999999999999999999
Q ss_pred eecHHHHHhCCCCCceEEEEeehHHH
Q psy9573 673 EIHPILQQKYDLPLAPIFFEVDALEL 698 (809)
Q Consensus 673 elhP~vl~~~~i~~~v~~~El~l~~L 698 (809)
.+||+|+++|+++.|+.++|||++.+
T Consensus 552 vlhPev~~~F~l~~~~s~~Ei~ie~~ 577 (578)
T KOG2472|consen 552 VLHPEVLTKFELTYPCSAVEIDIEPF 577 (578)
T ss_pred ccCHHHHhhcCCCCccceEEeeeEec
Confidence 99999999999999999999998754
No 9
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....
Probab=100.00 E-value=6.4e-45 Score=364.00 Aligned_cols=174 Identities=40% Similarity=0.655 Sum_probs=156.1
Q ss_pred cccceEEEEEecccCCCCCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecC
Q psy9573 216 LCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISN 295 (809)
Q Consensus 216 ~cp~y~~~vi~~v~v~~~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~ 295 (809)
.||+|.+++++|++...+||+||++||.++|++|+|++||++||+|+++|||+|+||+|||+++|++|.++++|+|++|+
T Consensus 1 ~c~~~~~~~~~~i~~~~~sp~~L~~rL~~~g~~~iN~lvDi~N~i~l~~g~pi~~~D~dki~~~i~~~~~~~~e~~~~l~ 80 (174)
T PF03483_consen 1 ACRRYFSRVIKNINKNRPSPEWLKRRLKKSGILPINNLVDIQNYISLETGQPIGAYDLDKIKGPITLRLAKGGEKFTPLG 80 (174)
T ss_dssp CSSEEEEEEEESB-TTHHH-HHHHHHHHHTT---HHHHHHHHHHHHHHHTTEEEEEEGGGTBSEEEEEEESTTEEEEBTT
T ss_pred CcchhhEEEEECCCCCcCCHHHHHHHHHhCCCcccccHHHHHHHHHHHhCCCCchhhHhHCCCCEEEEEecCCceEEECC
Confidence 49999999999999668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCCcEEEEeCCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHH
Q psy9573 296 DLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIK 375 (809)
Q Consensus 296 ~~~~~l~~~~lvi~D~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~ 375 (809)
+++++|+++++|++|++++++++|+||+++|+|+++|++||+|+++|+|..||+++++++++|++|+|||||+||+.+..
T Consensus 81 ~~~~~l~~~~~vi~D~~~~i~~~gi~~~~~t~i~~~T~~ilie~~~~~~~~i~~~~~~~~l~t~~~~r~~k~~~~~~~~~ 160 (174)
T PF03483_consen 81 GKEVELDEGDLVICDDNGIISIAGIIGSERTKITENTKNILIEVAGFDPKSIRKSSKKLKLRTDASYRYEKGIDPNLLLN 160 (174)
T ss_dssp SEEEEECTTCEEEECTTCEEEETTTEEBSTTC--TT--EEEEEEEES-HHHHHHHHHHTT---HHHHHHHH-S-TTCHHH
T ss_pred CceeeccceEEEEEECCCCEeeccccCCccceeEcCCCeEEEEEeecCHHHHHHHHHhcCcccHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy9573 376 CLERVTNLIIEICG 389 (809)
Q Consensus 376 al~~~~~ll~~~~g 389 (809)
|++++++||.++||
T Consensus 161 a~~~~~~ll~~~~g 174 (174)
T PF03483_consen 161 ALNRATSLLLEICG 174 (174)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999987
No 10
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=100.00 E-value=5.1e-42 Score=350.89 Aligned_cols=192 Identities=33% Similarity=0.552 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+.+.+++|+.|+++||+|++||||++++.+..+... ....++|.||+|+|+++||+||+||||+++++|++|++.++++
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~-~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~l 81 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGG-LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRL 81 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhccCC-CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeE
Confidence 467899999999999999999999999877666222 1357999999999999999999999999999999999999999
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC--eeee--ccCCC
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL--NFLK--INNSI 652 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi--~~~~--~~~~~ 652 (809)
||+|+||.++.. .+.|..+++++++|.....+|..+.+++||||+||+|+.++..+|+ .|.. ...++
T Consensus 82 FEiG~vf~~~~~---------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~~~~~~~~~~~~~ 152 (198)
T cd00769 82 FEIGRVFLKDED---------GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGIIVEFELEELDADL 152 (198)
T ss_pred EEeEeEEecCCC---------CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 999999975421 3468899999999988789998877889999999999999999995 5654 55678
Q ss_pred CcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHH
Q psy9573 653 LHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALEL 698 (809)
Q Consensus 653 ~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L 698 (809)
|||||+|+|+++|+.+|++|+|||+++++|||+.|+++||||++.|
T Consensus 153 ~hpg~~a~I~~~g~~vG~~G~lhP~v~~~~~l~~~v~~~Ei~l~~l 198 (198)
T cd00769 153 FHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198 (198)
T ss_pred cCCCceEEEEECCEEEEEEEeeCHHHHHHcCCCCceEEEEEecccC
Confidence 9999999999999999999999999999999999999999999864
No 11
>PLN02788 phenylalanine-tRNA synthetase
Probab=100.00 E-value=2.6e-40 Score=363.63 Aligned_cols=306 Identities=14% Similarity=0.191 Sum_probs=250.7
Q ss_pred cCCCCCCCCCc---cccCCCCCcchHHHHHHHHHHHhC---CceEeee-ccccChHHH-hhh-cCC-----CCCCcEEee
Q psy9573 476 FENIPISLPIT---VSKISPIKEGYQSLFSIRHQLAFA---DYQEVIN-YSFIEDSLE-KDF-SQN-----INNYPIELL 541 (809)
Q Consensus 476 ydnip~~~p~~---~~~~~~~~~~~~~~~~lr~~L~~~---Gf~Evit-ysf~s~~~~-~~~-~~~-----~~~~~i~L~ 541 (809)
+.|+|+..... ....+...+...+.++|++++.++ ||.+.-. ...++.... +.+ .|. ...+..-|
T Consensus 47 ~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~- 125 (402)
T PLN02788 47 TNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV- 125 (402)
T ss_pred cCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-
Confidence 56776543322 223455667788999999999998 9988765 455554322 122 222 12234455
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCC
Q psy9573 542 NPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEE 621 (809)
Q Consensus 542 NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~ 621 (809)
| +..+|||+.-+.-.+.++.+. -++|-+|+||++|+-+ .++..+..++-++..... ..|..+
T Consensus 126 ~----~~~lLRTHTSa~q~~~l~~~~------~~~~~~g~VyRrD~iD------~tH~p~FhQ~EG~~v~~~--~~~~~~ 187 (402)
T PLN02788 126 D----AQTVLRCHTSAHQAELLRAGH------THFLVTGDVYRRDSID------ATHYPVFHQMEGVRVFSP--EEWEAS 187 (402)
T ss_pred c----CCccccCCCcHHHHHHHHhCC------CcEEEEeeEeecCCCC------cccCccceeEEEEEEecc--cccccc
Confidence 3 468999999999999998532 2899999999998754 467888888888877532 245543
Q ss_pred C---CcCCHHHHHHHHHHHHHhc-CC---eeeeccCCCCcCccEEEEEECCE---EEEEEEeecHHHHHhCCCCC-ceEE
Q psy9573 622 N---RNIDYFDLKNDLENLFFPI-KL---NFLKINNSILHPNRSALIFKKTK---NIGFIGEIHPILQQKYDLPL-APIF 690 (809)
Q Consensus 622 ~---~~~df~dlKg~le~ll~~l-gi---~~~~~~~~~~hPgrsA~I~~~g~---~iG~iGelhP~vl~~~~i~~-~v~~ 690 (809)
+ ..+.|.++||+|+.++..+ |. .|.++..|++|||++++|+++|+ .+| +|++||++++++|++. .+|+
T Consensus 188 ~~~~~~~~~~dLKg~Le~l~~~lfg~~~~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG-~G~vhP~Vl~~~gi~~~~g~A 266 (402)
T PLN02788 188 GLDGTDLAAEDLKKTLEGLARHLFGDVEMRWVDAYFPFTNPSFELEIFFKGEWLEVLG-CGVTEQEILKNNGRSDNVAWA 266 (402)
T ss_pred cccccccCHHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCCeEEEEEECCEEEEEee-EEEEcHHHHHHcCCCCCcEEE
Confidence 2 3578999999999999988 75 67788889999999999999998 778 9999999999999987 6899
Q ss_pred EEeehHHHhc-----------------------ccCC--ccccCCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCc
Q psy9573 691 FEVDALELQK-----------------------RQIP--NYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSN 745 (809)
Q Consensus 691 ~El~l~~L~~-----------------------~~~~--~~~~~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~ 745 (809)
|||+|++|.+ .... +|+|+||||+++||||||+|+++++++|.+.|++.+++
T Consensus 267 fglgLeRLaml~~~I~DIRlf~~~D~rfl~Qf~~~~~~~~fkp~SkfP~v~RDiSf~v~~~v~~~~i~~~Ir~~~g~--- 343 (402)
T PLN02788 267 FGLGLERLAMVLFDIPDIRLFWSDDERFTSQFKEGQLGVKFKPYSKYPPCYKDISFWISDEFTENNLCEVVRGIAGD--- 343 (402)
T ss_pred EEEeHHHHHHhhcCCchhhhhhcccHHHHHhccccccccccCcCCCCCCcceeEEEEECCCCCHHHHHHHHHHhCcC---
Confidence 9999998853 1122 69999999999999999999999999999999999888
Q ss_pred ccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q psy9573 746 CFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLR 808 (809)
Q Consensus 746 ~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~~~ii~~L~~~~~a~lR 808 (809)
++++|++||+|+|++ +|+||+|||++||+++||||++|||+++++|++.|.++||++||
T Consensus 344 --lle~V~lfD~Y~g~k--~GkkSl~~Rl~yrs~erTLTdeEIn~i~~kI~~~L~~klgv~LR 402 (402)
T PLN02788 344 --LVEEVKLIDNFTNPK--KGKTSHCYRIVYRSMERSLTDEEINALQDKVREEVQKKLGVELR 402 (402)
T ss_pred --eEEEEEEEEEecCCC--CCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeC
Confidence 999999999999987 99999999999999999999999999999999999999999998
No 12
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=100.00 E-value=1e-33 Score=313.01 Aligned_cols=298 Identities=17% Similarity=0.210 Sum_probs=229.3
Q ss_pred CCCCcchHHHHHHHHHHHhC--------CceEeeecc-ccChHHH-hhhc-CC-----CCCCcEEeeCCCCccccccchh
Q psy9573 491 SPIKEGYQSLFSIRHQLAFA--------DYQEVINYS-FIEDSLE-KDFS-QN-----INNYPIELLNPISKKFNTMRST 554 (809)
Q Consensus 491 ~~~~~~~~~~~~lr~~L~~~--------Gf~Evitys-f~s~~~~-~~~~-~~-----~~~~~i~L~NPis~e~s~lR~S 554 (809)
+...+....+++|.+++.++ ||+=+-.++ .++.... +.++ |. ...+..-+ | +...|||+
T Consensus 39 ~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~----~~~lLRTH 113 (460)
T TIGR00469 39 KEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N----EQHLLRAH 113 (460)
T ss_pred CCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c----CCceeCCC
Confidence 44566777899999999998 774433322 2332221 2222 21 11234445 3 56899999
Q ss_pred hHHHHHHHHHHHhcCCCCCee--EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCC---------------
Q psy9573 555 LIGSLVNNICYNLKRKLERIR--LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQ--------------- 617 (809)
Q Consensus 555 LlpgLL~~l~~N~~~~~~~i~--lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~--------------- 617 (809)
--+...++++.+... .++++ +.-.|+||++|+.+ .++.....++-|+.-.......
T Consensus 114 TSa~q~~~~~~~~~~-~~~~~~~~i~~G~VYRrD~iD------atH~p~FHQ~EG~~v~~~~~~~~~~~~~~~~~~~~~~ 186 (460)
T TIGR00469 114 TSAHELECFQGGLDD-SDNIKSGFLISADVYRRDEID------KTHYPVFHQADGAAIRKRTKADLFEKEPGYIEKFEED 186 (460)
T ss_pred CcHHHHHHHHhcccc-CCCcceeeEeecceeeCCCCc------cccCccceeeEEEEEeccccccccccccchhhhhhhh
Confidence 999999999976532 24465 99999999998754 3465566666654444311100
Q ss_pred CCC-------CCCcCC-----------------H---------HHHHHHHHHHHHhc-C-------------------Ce
Q psy9573 618 WGE-------ENRNID-----------------Y---------FDLKNDLENLFFPI-K-------------------LN 644 (809)
Q Consensus 618 w~~-------~~~~~d-----------------f---------~dlKg~le~ll~~l-g-------------------i~ 644 (809)
|.. .+.++. | -+||+.|+.+++.+ | ++
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~LK~~L~~~~~~lFg~~~~~~~~~~~~~~~~~~~~r 266 (460)
T TIGR00469 187 IRGTEADLNKENVKIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSIEGITKDLFGKKISSMIKNKANNTPKELKVR 266 (460)
T ss_pred hhhccccccccCcceeccCcccccccccchhhhccHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccccCccceEE
Confidence 000 000001 4 78999999998765 4 24
Q ss_pred eeeccCCCCcCccEEEEEECCE--EEEEEEeecHHHHHhCCCCCce---EEEEeehHHH---------------------
Q psy9573 645 FLKINNSILHPNRSALIFKKTK--NIGFIGEIHPILQQKYDLPLAP---IFFEVDALEL--------------------- 698 (809)
Q Consensus 645 ~~~~~~~~~hPgrsA~I~~~g~--~iG~iGelhP~vl~~~~i~~~v---~~~El~l~~L--------------------- 698 (809)
|+++.+|+.+|+..++|.++|+ +||.+|.+||+|+++.|++.++ ++|+++|++|
T Consensus 267 ~~ps~fPftePs~evdi~~~g~WiEi~gcG~v~p~vl~~~g~~~~~~~g~AfGiGleRlaMl~~gi~DiR~~~~~d~rfl 346 (460)
T TIGR00469 267 WIDAYFPFTAPSWEIEIWFKDEWLELCGCGIIRHDILLRAGVHPSETIGWAFGLGLDRIAMLLFDIPDIRLFWSNDEGFL 346 (460)
T ss_pred EEeccCCCCCcceEEEEEECCeeEEEeeeccCcHHHHHHcCCCccceEEEEEEecHHHHHHHHcCccHHHHHhcccHHHH
Confidence 6778889999999999999998 8999999999999999998764 8999999999
Q ss_pred hcc------cCCccccCCCCCCceeeEEEEEcCCCC------HHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCC
Q psy9573 699 QKR------QIPNYIQISKFPNVVRDIVFIFNKNIN------LQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDN 766 (809)
Q Consensus 699 ~~~------~~~~~~~~skfP~~~RDlS~vv~~~~~------~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~g 766 (809)
.+- ...+|+|+|+||+++||||||||++++ +++|.+.|++.+++ ++++|++||+|+|++ +|
T Consensus 347 ~qf~~~~~~~~~~fkpiSKfP~v~RDISfvV~~~v~~~~~~~~~dI~d~Ir~~~g~-----lle~V~LfDvY~g~k--~G 419 (460)
T TIGR00469 347 RQFSEGDLHLIPKFKPISHHPGCFNDLAFWLPEDIEDDAGFHENDFMDIIRNIAGD-----LVEQIKLVDKFKHPK--TG 419 (460)
T ss_pred HhhcccccccccccCcCCCCCCccccEEEEecCCCcccccccHHHHHHHHHHhCcC-----eEEEEEEEEEecCCC--CC
Confidence 221 346899999999999999999999988 79999999999888 999999999999997 99
Q ss_pred ceEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q psy9573 767 EKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKL 807 (809)
Q Consensus 767 kkSl~~rl~~~~~~rTLt~~ev~~~~~~ii~~L~~~~~a~l 807 (809)
+||+||||+||+++||||++|||+++++|+++|+++||++|
T Consensus 420 kKSLa~RL~yrs~eRTLTdeEVn~i~~kIi~~L~kkfga~~ 460 (460)
T TIGR00469 420 KKSMCFRINYQHMDRNLTNAEVNEIHDMIASALVDEFNVEI 460 (460)
T ss_pred cEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999975
No 13
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=100.00 E-value=9.7e-34 Score=293.83 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=154.5
Q ss_pred cchHHHHHHHHHHHhCCceEeeeccccChH-HHhhhcCCCCC------CcEEeeCCCCccccccchhhHHHHHHHHHHHh
Q psy9573 495 EGYQSLFSIRHQLAFADYQEVINYSFIEDS-LEKDFSQNINN------YPIELLNPISKKFNTMRSTLIGSLVNNICYNL 567 (809)
Q Consensus 495 ~~~~~~~~lr~~L~~~Gf~Evitysf~s~~-~~~~~~~~~~~------~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~ 567 (809)
+.+++.+++|+.|+++||+|++||+|++++ ..+.+...... +.++|.||+ +++||+||+||||+++++|
T Consensus 2 ~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~~l~~N- 77 (218)
T cd00496 2 PLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---RLLLRTHTSAVQARALAKL- 77 (218)
T ss_pred hHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc---eEEEeccCcHHHHHHHHhc-
Confidence 356789999999999999999999999994 45555322001 358999999 9999999999999999999
Q ss_pred cCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcC--C--
Q psy9573 568 KRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK--L-- 643 (809)
Q Consensus 568 ~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lg--i-- 643 (809)
..++++||+|+||++++.+ ..+..|..+++++++| ..+|||++||+++++++.+| +
T Consensus 78 ---~~~~~lFEiG~Vf~~~~~~------~~~~~E~~~l~~~~~g-----------~~~df~dlkg~ve~ll~~l~~~~~~ 137 (218)
T cd00496 78 ---KPPIRIFSIGRVYRNDEID------ATHLPEFHQIEGLVVD-----------KGLTFADLKGTLEEFAKELFGPITK 137 (218)
T ss_pred ---CCCeeEEEEcCeEECCCCC------CCcCCccEEEEEEEEC-----------CCCCHHHHHHHHHHHHHHhcCCCce
Confidence 4579999999999875421 1122389999999999 35799999999999999998 4
Q ss_pred -eeeeccCCCCcCccEEEEEECC----EEEEEEEeecHHHHHhCCC--CCceEEEEeehHHHhc
Q psy9573 644 -NFLKINNSILHPNRSALIFKKT----KNIGFIGEIHPILQQKYDL--PLAPIFFEVDALELQK 700 (809)
Q Consensus 644 -~~~~~~~~~~hPgrsA~I~~~g----~~iG~iGelhP~vl~~~~i--~~~v~~~El~l~~L~~ 700 (809)
.|.+..++++|||+||.|+++| +.||++|+|||+++++||| +.|+++||||++.|.+
T Consensus 138 ~~~~~~~~~~~hp~~sa~i~~~g~~~~~~iG~~G~lhP~vl~~~~i~~~~~v~~~Eidl~~l~~ 201 (218)
T cd00496 138 VRFRPSYFPFTEPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGIDEEYSGFAFGIGLERLAM 201 (218)
T ss_pred eEecCCcCCCCCCcEEEEEEeCCCCCeEEEEecccccHHHHHHCCCCCCceEEEEEecHHHHHH
Confidence 4556667889999999999999 8999999999999999999 9999999999999875
No 14
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=100.00 E-value=4.5e-33 Score=278.57 Aligned_cols=173 Identities=38% Similarity=0.667 Sum_probs=166.5
Q ss_pred ccceEEEEEecccCCCCCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCC-EEEEEcCCCCeEEecC
Q psy9573 217 CGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGE-LNIRWGNIGETIKISN 295 (809)
Q Consensus 217 cp~y~~~vi~~v~v~~~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~-i~vr~a~~~e~~~~L~ 295 (809)
||++.++++++++...+||+|||+||+++|.+++|++||++||+|+++|||+|+||+|+|++. +.++.++++|.|.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~s~~~l~~rL~~~~~~~~n~~vdi~n~~~l~~g~p~~~~D~d~i~~~~l~l~~~~~~e~~~~l~ 80 (174)
T smart00873 1 CPRYLGRVIRGVKNTRPSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGKDIPLRRAKEGETFETLD 80 (174)
T ss_pred CCcEEEEEEECCCCCCCCHHHHHHHHHHcCCCCcchhhhHHHHHHHHhCCCCeeEcHHHcCCCeEEEEECCCCCEEEecC
Confidence 788999999999964589999999999999989999999999999999999999999999987 9999999999999999
Q ss_pred CeeeeecCCcEEEEeCCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHH
Q psy9573 296 DLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIK 375 (809)
Q Consensus 296 ~~~~~l~~~~lvi~D~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~ 375 (809)
++++.+.++.+|+.|++++++++|+||+++++|+++|+++++|+++|+|..||.+++.+++.+++++||+||+||+.+..
T Consensus 81 ~~~~~~~~~~~vi~d~~~~~~i~g~~g~~~~~~~~~t~~i~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 160 (174)
T smart00873 81 GKEYELDEGDLVIADDEGPLALAGVMGGEESEVTENTTNIFLEPAIFSPRTIRITARTLNLFTDASGRFERGVDPELVEL 160 (174)
T ss_pred CcEEecCCCCEEEEeCCcCEEEEEEecCCcceecCCCCEEEEEEEEeCcHHHHHHHHHcCCcceeeecccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC
Q psy9573 376 CLERVTNLIIEICG 389 (809)
Q Consensus 376 al~~~~~ll~~~~g 389 (809)
|+++++.+|.++++
T Consensus 161 al~~l~~ll~~~~~ 174 (174)
T smart00873 161 ALDRAAALLLEICG 174 (174)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998764
No 15
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.98 E-value=9.6e-32 Score=299.42 Aligned_cols=227 Identities=14% Similarity=0.199 Sum_probs=181.9
Q ss_pred CCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHh-hhcCC-------------CCCCcE-----------
Q psy9573 484 PITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEK-DFSQN-------------INNYPI----------- 538 (809)
Q Consensus 484 p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~-~~~~~-------------~~~~~i----------- 538 (809)
|......+...+.+....++|+.-..+||.|++|-..+.+.+.. .|++. .....|
T Consensus 37 p~~~~~~~~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~ 116 (529)
T PRK06253 37 PRLKPSYGKPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIE 116 (529)
T ss_pred CcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHH
Confidence 33334445566788889999999999999999999999886432 22211 000000
Q ss_pred ----------------------------------Eee------------------------CCCCccccccchhhHHHHH
Q psy9573 539 ----------------------------------ELL------------------------NPISKKFNTMRSTLIGSLV 560 (809)
Q Consensus 539 ----------------------------------~L~------------------------NPis~e~s~lR~SLlpgLL 560 (809)
+|+ -|. ..+++||+||+||||
T Consensus 117 ~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~-~~~svLRtSLlPGLL 195 (529)
T PRK06253 117 EILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPE-SSRLTLRSHMTSGWF 195 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCc-cccCccccchHHHHH
Confidence 011 122 468999999999999
Q ss_pred HHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 561 NNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 561 ~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
+++++|++|+..++++||+|+||.++.. .|..+++++++| ..| ....++|||++||++++|+..
T Consensus 196 ~tLs~Nl~Rg~~piRLFEIGRVFr~d~~-----------eE~t~La~llsG----s~W-~~~e~vDFfDlKGiLE~LL~~ 259 (529)
T PRK06253 196 ITLSSLLEKRPLPIKLFSIDRCFRREQR-----------EDASRLMTYHSA----SCV-IADEDVTVDDGKAVAEGLLSQ 259 (529)
T ss_pred HHHHHHHhCCCCCEEEEEEeeEEecCCc-----------cchhheeEEEEc----ccc-ccCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999975421 267799999999 567 556778999999999999999
Q ss_pred cCC---eeeec--cCCCCcCccEEEEEE-----CC-EEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcc--c-----
Q psy9573 641 IKL---NFLKI--NNSILHPNRSALIFK-----KT-KNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKR--Q----- 702 (809)
Q Consensus 641 lgi---~~~~~--~~~~~hPgrsA~I~~-----~g-~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~--~----- 702 (809)
+|+ .|.+. ..++||||+||+|++ +| +.||++|++||+++++|||+.|+++||||+++|.+. .
T Consensus 260 LGI~~i~f~pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fDI~~pV~aFELDLErL~~i~~~~~dir 339 (529)
T PRK06253 260 FGFTKFKFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYGIDVPVMNLGLGVERLAMILYGAEDVR 339 (529)
T ss_pred cCCCeEEEeecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcCCCCceEEEEEeHHHHHhhhcCccccc
Confidence 997 45555 557899999999999 88 789999999999999999999999999999999642 2
Q ss_pred CCccccCCCCCCceeeEEEEEcCCC
Q psy9573 703 IPNYIQISKFPNVVRDIVFIFNKNI 727 (809)
Q Consensus 703 ~~~~~~~skfP~~~RDlS~vv~~~~ 727 (809)
..+|+++|+||++.|||||++.-+-
T Consensus 340 ~~~Y~~~SkFPav~RDLA~Vi~~~~ 364 (529)
T PRK06253 340 EMVYPQFYEWELSDREIARMIKVDK 364 (529)
T ss_pred ccCcCCCCCCCCccceEEEEEeccc
Confidence 2369999999999999999997653
No 16
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.97 E-value=4.6e-30 Score=277.03 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=158.1
Q ss_pred CCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChH-HHhhhcCCC------CCCcEEeeCCCCccccccchh
Q psy9573 482 SLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDS-LEKDFSQNI------NNYPIELLNPISKKFNTMRST 554 (809)
Q Consensus 482 ~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~-~~~~~~~~~------~~~~i~L~NPis~e~s~lR~S 554 (809)
++|......+..++.+++.+++|+.|+++||+|++||+|+++. ..+.++... ..+.+.|. |+++||||
T Consensus 60 tlp~~~~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~-----d~~vLRts 134 (294)
T TIGR00468 60 TLPGTKIYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK-----DRLLLRTH 134 (294)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec-----CCcceecc
Confidence 3443222335567788899999999999999999999999984 345553220 01334443 89999999
Q ss_pred hHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHH
Q psy9573 555 LIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDL 634 (809)
Q Consensus 555 LlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~l 634 (809)
|+|+||+++++|++ +++++||+|+||+++..+ .++..|..++++++.+ .++||||+||+|
T Consensus 135 l~p~ll~~l~~N~~---~pirlFEiGrVfr~d~~d------~~~~pef~ql~gl~~~-----------~~~~f~dLKg~l 194 (294)
T TIGR00468 135 TTAVQLRTMEENEK---PPIRIFSPGRVFRNDTVD------ATHLPEFHQVEGLVID-----------KNVSFTNLKGFL 194 (294)
T ss_pred cHHHHHHHHHhcCC---CCceEEEecceEEcCCCC------CccCChhhEEEEEEEC-----------CCCCHHHHHHHH
Confidence 99999999999987 679999999999876421 1233488899999765 467999999999
Q ss_pred HHHHHhcCC----eeeeccCCCCcCccEEEEEE-CCE---EEEEEEeecHHHHHhCCCCC--ceEEEEeehHHHhc
Q psy9573 635 ENLFFPIKL----NFLKINNSILHPNRSALIFK-KTK---NIGFIGEIHPILQQKYDLPL--APIFFEVDALELQK 700 (809)
Q Consensus 635 e~ll~~lgi----~~~~~~~~~~hPgrsA~I~~-~g~---~iG~iGelhP~vl~~~~i~~--~v~~~El~l~~L~~ 700 (809)
++++..+|+ +|+++..|++|||++|.|++ +|+ .||++|+|||+|++++||+. ++++|||++++|.+
T Consensus 195 e~ll~~l~~~~~~~~~~~~~p~~~Ps~e~~i~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~~~~v~afel~lerl~m 270 (294)
T TIGR00468 195 EEFLKKMFGETEIRFRPSYFPFTEPSAEIDVYCWEGKTWLEVLGAGMFRPEVLEPMGIDPTYPGFAWGIGIERLAM 270 (294)
T ss_pred HHHHHHhCCCcceeeccCCCCCCCCCEEEEEEEeCCCccEEEEEeccCcHHHHHHCCCCCCCeEEEEEeeHHHHHH
Confidence 999999986 56677789999999999999 888 99999999999999999999 99999999999874
No 17
>COG0073 ARC1 EMAP domain [General function prediction only]
Probab=99.96 E-value=4.6e-29 Score=234.83 Aligned_cols=120 Identities=31% Similarity=0.421 Sum_probs=113.8
Q ss_pred HHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCC--ceEEEEeCCCcccCCCEEEEEecCceecCcc
Q psy9573 25 LTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYK--NILDIVCNIPNIRVGLKVPCAIIGSSLLCIN 102 (809)
Q Consensus 25 Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~--~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~ 102 (809)
+++.|+|+|.+.........++||+|+++++||+||||.+|+||+|+ +.+||||||+|+++|++|++|++|+++|+
T Consensus 1 ~~~~~~e~e~i~~~~~~~~~l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~-- 78 (123)
T COG0073 1 LTRIGLEVEEIEIDDFAKVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNG-- 78 (123)
T ss_pred CcccccccccccccccccCCeEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCC--
Confidence 46889999999988877889999999999999999999999999996 58999999999999999999999999998
Q ss_pred cCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCc
Q psy9573 103 KKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKN 150 (809)
Q Consensus 103 ~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~ 150 (809)
| +||++++||++|+||+||+.|+|++.++.||+.+|++.+.|++
T Consensus 79 ---~-~ikp~klrG~~S~GMics~~e~~~~~~~~~il~~~~~~~~g~~ 122 (123)
T COG0073 79 ---G-KLKPAKLRGVESEGMLLSAEELGLSDENVGILTLDEGVPPGTK 122 (123)
T ss_pred ---C-cccceeecCcccceEEEEcccCCCccccceEEeCCCCCCCCCC
Confidence 7 9999999999999999999999999889999999999888875
No 18
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.95 E-value=1.1e-27 Score=263.48 Aligned_cols=208 Identities=14% Similarity=0.100 Sum_probs=176.7
Q ss_pred hhhhhccCCCCCCCC--------CccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee
Q psy9573 470 IIRIYGFENIPISLP--------ITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL 541 (809)
Q Consensus 470 IaR~yGydnip~~~p--------~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~ 541 (809)
|+|.||||+|++.+| ... ..+...+..++.+.+|+.|.++||+|+.|+.|++.+..+.+... ....+.
T Consensus 209 v~~~~gf~~~ep~lP~~~~~~~~~~~-TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~---~g~eI~ 284 (453)
T TIGR02367 209 LNMAKPFRELEPELLSRRKKDFQQIY-AEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGID---NDTELS 284 (453)
T ss_pred hHHhccccccCcccCccccccccccc-ccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCc---cCCccc
Confidence 499999999999999 433 44566677889999999999999999999999987776666432 124578
Q ss_pred CCC--CccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCC
Q psy9573 542 NPI--SKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWG 619 (809)
Q Consensus 542 NPi--s~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~ 619 (809)
||+ +.++.+||++++|+|++.++.|.++...++|+||+|+||+.+..+ .++..|.+++++.+.|
T Consensus 285 n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~------~thlREF~QL~~eIaG-------- 350 (453)
T TIGR02367 285 KQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDG------KEHLEEFTMLNFCQMG-------- 350 (453)
T ss_pred ccceEecCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCC------CCCcCeEEEEEEEEEC--------
Confidence 888 788999999999999999998765333469999999999876543 3567899999999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHhcCCeeeeccCCCCcCccEEEEEECCEEE--EEEEeecHHHHHhCCCCCceEEEEeehHH
Q psy9573 620 EENRNIDYFDLKNDLENLFFPIKLNFLKINNSILHPNRSALIFKKTKNI--GFIGEIHPILQQKYDLPLAPIFFEVDALE 697 (809)
Q Consensus 620 ~~~~~~df~dlKg~le~ll~~lgi~~~~~~~~~~hPgrsA~I~~~g~~i--G~iGelhP~vl~~~~i~~~v~~~El~l~~ 697 (809)
...+|.|+++.+..+|+.+|+.|+-..++.|.|||+|+|+.++..+ |+||++|| +++|||..||.+|||+|++
T Consensus 351 ---~~atfaDlealL~e~Lr~LGIdfeitE~s~FI~GR~A~I~~G~~Ev~~GvfGEihp--L~~fGIe~PVvAfEI~LeR 425 (453)
T TIGR02367 351 ---SGCTRENLEAIIKDFLDHLEIDFEIVGDSCMVYGDTLDIMHGDLELSSAVVGPIPL--DREWGIDKPWIGAGFGLER 425 (453)
T ss_pred ---CCCCHHHHHHHHHHHHHHCCCceEEeCCCceEecceeeeecCCEEEeeEEEeeccc--ccccCCCCccEEEEeehhH
Confidence 4678999999999999999987765667899999999999776666 99999997 9999999999999999999
Q ss_pred Hhc
Q psy9573 698 LQK 700 (809)
Q Consensus 698 L~~ 700 (809)
|..
T Consensus 426 Lam 428 (453)
T TIGR02367 426 LLK 428 (453)
T ss_pred HHH
Confidence 974
No 19
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.94 E-value=4.6e-27 Score=215.32 Aligned_cols=102 Identities=38% Similarity=0.719 Sum_probs=98.6
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
++||+|+++++||++++|.+|+|++|. +.+|||||++|+..|++|++|.+||.||+ +.+|+++++||+.|+|||
T Consensus 1 ~~vg~I~~~~~hp~~~kL~~~~vd~g~~~~~~Iv~~~~n~~~g~~vvv~~~gs~l~~-----~~~i~~~~~~G~~S~GMl 75 (103)
T cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVRAGDKVVVALPGAVLPG-----GLKIKKRKLRGVESEGML 75 (103)
T ss_pred CEEEEEEEEEecCCCCceEEEEEEeCCCcEEEEEcCccHhhcCCEEEEEecCCCcCC-----CceEcceeeCCcccchhC
Confidence 589999999999999999999999997 88999999999999999999999999998 889999999999999999
Q ss_pred cCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
||++|||++++++||++||+++++|+++
T Consensus 76 ~s~~elg~~~~~~gi~~l~~~~~~G~~~ 103 (103)
T cd02796 76 CSAKELGLGEDSDGIIELPEDAPVGTDI 103 (103)
T ss_pred cchhHcCCCCCCCeEEECCCCCCCCCCC
Confidence 9999999999999999999999999875
No 20
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.93 E-value=6.9e-25 Score=230.34 Aligned_cols=201 Identities=19% Similarity=0.287 Sum_probs=165.6
Q ss_pred CCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhhc-CCC-----CCCcEEeeCCCC--ccccc
Q psy9573 480 PISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDFS-QNI-----NNYPIELLNPIS--KKFNT 550 (809)
Q Consensus 480 p~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~~-~~~-----~~~~i~L~NPis--~e~s~ 550 (809)
..++|......+...+.+++.+++|++|+++||+|+.++.+.+.... ++++ |.+ ..+.+-|.||.+ ++.++
T Consensus 3 d~~~p~~~~~~G~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~v 82 (247)
T PF01409_consen 3 DVTLPGKRFTPGRLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSV 82 (247)
T ss_dssp -TTSGCTTCCCSBTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEE
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhh
Confidence 34555555566778889999999999999999999999999776653 4443 221 235688999999 99999
Q ss_pred cchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHH
Q psy9573 551 MRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDL 630 (809)
Q Consensus 551 lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dl 630 (809)
|||++.|++++++ |.++. +++|+||+|+||++++.+ .++..+..++.+++++ ..++|.++
T Consensus 83 LRThts~~~~~~l--~~~~~-~p~kif~iG~VyR~D~~D------~th~~~f~Qleg~~~~-----------~~~~f~~L 142 (247)
T PF01409_consen 83 LRTHTSPGQLRTL--NKHRP-PPIKIFEIGKVYRRDEID------ATHLPEFHQLEGLVVD-----------KNVTFEDL 142 (247)
T ss_dssp E-SSTHHHHHHHH--TTTSH-SSEEEEEEEEEESSSCSB------SSBESEEEEEEEEEEE-----------TTE-HHHH
T ss_pred hhhhhhHHHHHHH--HHhcC-CCeEEEecCceEecCCcc------cccCccceeEeeEEEe-----------cccchhHH
Confidence 9999999999999 55554 569999999999998754 4577899999999998 46899999
Q ss_pred HHHHHHHHHhc-CC----eeeeccCCCCcCccEEEEEE----CC--EEEEEEEeecHHHHHhCCC--CCceEEEEeehHH
Q psy9573 631 KNDLENLFFPI-KL----NFLKINNSILHPNRSALIFK----KT--KNIGFIGEIHPILQQKYDL--PLAPIFFEVDALE 697 (809)
Q Consensus 631 Kg~le~ll~~l-gi----~~~~~~~~~~hPgrsA~I~~----~g--~~iG~iGelhP~vl~~~~i--~~~v~~~El~l~~ 697 (809)
||.|+.+++.+ |. +|+++.+|+++||++++|++ ++ .+||.+|++||+|++++|+ +.++++|++.+|+
T Consensus 143 k~~l~~l~~~lfG~~~~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid~~~~~~A~G~GleR 222 (247)
T PF01409_consen 143 KGTLEELLKELFGIDVKVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGIDEEYPGFAFGLGLER 222 (247)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--TTSEEEEEEEEHHH
T ss_pred HHHHHHHHHHHhhcccceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcCccceEEEecCCHHH
Confidence 99999999999 85 46788899999999999999 33 3699999999999999999 7899999999999
Q ss_pred Hhc
Q psy9573 698 LQK 700 (809)
Q Consensus 698 L~~ 700 (809)
|..
T Consensus 223 lam 225 (247)
T PF01409_consen 223 LAM 225 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 21
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=99.92 E-value=8.8e-25 Score=196.79 Aligned_cols=94 Identities=33% Similarity=0.623 Sum_probs=82.9
Q ss_pred CCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHH
Q psy9573 710 SKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIIN 789 (809)
Q Consensus 710 skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~ 789 (809)
|+||+++|||||++|++++++++.++|++..++ ++++|++||+|+|+++++|+||+|||++||+.+||||++||+
T Consensus 1 S~fP~~~RDiS~~v~~~~~~~~i~~~i~~~~~~-----~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~ 75 (94)
T PF03147_consen 1 SKFPSVERDISFVVPEDVPFADIEEVIRSAGGP-----LLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVN 75 (94)
T ss_dssp -SS--EEEEEEEEEETTS-HHHHHHHHHHHHTT-----TEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHH
T ss_pred CcCCCccccEEEEECCCCCHHHHHHHHHHhCcc-----ceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHH
Confidence 799999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccC
Q psy9573 790 NAINALINSVCKNFNAKLR 808 (809)
Q Consensus 790 ~~~~~ii~~L~~~~~a~lR 808 (809)
+++++|+++|+++||++||
T Consensus 76 ~~~~~i~~~l~~~~~~~lR 94 (94)
T PF03147_consen 76 EIHDKIIKALEKKLGAELR 94 (94)
T ss_dssp HHHHHHHHHHHHTCT-BEE
T ss_pred HHHHHHHHHHHHHhCcEeC
Confidence 9999999999999999998
No 22
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=5e-23 Score=227.83 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=159.2
Q ss_pred cCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCC--CccccccchhhHHHHHHHHHHH
Q psy9573 489 KISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPI--SKKFNTMRSTLIGSLVNNICYN 566 (809)
Q Consensus 489 ~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPi--s~e~s~lR~SLlpgLL~~l~~N 566 (809)
..+...+...+.+.+|++|.++||+|+.|++|++.+..+.++.. . ...+.+|+ .++..+||++|+|+|++.++.|
T Consensus 199 ~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~--~-g~~i~~~my~ideel~LRpsLtPsLlr~la~n 275 (417)
T PRK09537 199 EEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGID--N-DTELSKQIFRVDKNFCLRPMLAPGLYNYLRKL 275 (417)
T ss_pred ccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCC--C-cccchhhheeeCCceEehhhhHHHHHHHHHhh
Confidence 34555667789999999999999999999999988876665432 1 12344555 5678999999999999999988
Q ss_pred hcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 567 LKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 567 ~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
.++...++|+||+|+||+.+..+ ..+..|..++++.+.| ...+|.+++++++++|+.||+.|.
T Consensus 276 ~k~~~~P~RIFEIG~VFR~E~~g------~~hlrEf~Ql~~~iiG-----------s~~~f~dL~~lleeLL~~LGI~f~ 338 (417)
T PRK09537 276 DRILPDPIKIFEIGPCYRKESDG------KEHLEEFTMVNFCQMG-----------SGCTRENLENIIDDFLKHLGIDYE 338 (417)
T ss_pred hhcccCCeeEEEEeceEecCCCC------CCCcceEEEEEEEEeC-----------CchHHHHHHHHHHHHHHHCCCCcE
Confidence 76555679999999999876532 2366799999999998 356899999999999999999876
Q ss_pred eccCCCCcCccEEEEEECCEEE--EEEEeecHHHHHhCCCCCceEEEEeehHHHhc
Q psy9573 647 KINNSILHPNRSALIFKKTKNI--GFIGEIHPILQQKYDLPLAPIFFEVDALELQK 700 (809)
Q Consensus 647 ~~~~~~~hPgrsA~I~~~g~~i--G~iGelhP~vl~~~~i~~~v~~~El~l~~L~~ 700 (809)
...++.|+|||+|+|..+++.+ |+||++| ++++|||..||++|||+|++|.+
T Consensus 339 i~s~~~fi~GR~adI~~g~~el~~G~fGEi~--VLe~fGI~~PVva~EIdLerL~~ 392 (417)
T PRK09537 339 IIGDNCMVYGDTIDIMHGDLELSSAVVGPIP--LDREWGIDKPWIGAGFGLERLLK 392 (417)
T ss_pred EecCCcceecCeEEEEeCCEEEeeEEEEEEe--hhhhcCCCCceEEEEEeHHHHHH
Confidence 5567799999999999998877 9999996 99999999999999999999974
No 23
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.87 E-value=1.3e-21 Score=200.39 Aligned_cols=174 Identities=17% Similarity=0.113 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
..+.+.+|+.|.++||+|+.||+|++.+........ ...+.+.||++.+..+||+|++|++++++++|+ + ..++++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~-~-~~~~~l 78 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHE--PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-R-KLPLRL 78 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCcc--HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc-c-cCCEEE
Confidence 357889999999999999999999999776554332 245789999999999999999999999999999 4 457999
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC----eee-eccCC
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL----NFL-KINNS 651 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi----~~~-~~~~~ 651 (809)
||+|+||+.+... . . .....|..++++.++|.... ...+|+++|+++++++..+|+ .+. ....+
T Consensus 79 feig~vfr~e~~~-~-~--~~~~~ef~~l~~~~~g~~~~-------~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~ 147 (211)
T cd00768 79 AEIGPAFRNEGGR-R-G--LRRVREFTQLEGEVFGEDGE-------EASEFEELIELTEELLRALGIKLDIVFVEKTPGE 147 (211)
T ss_pred EEEcceeecCCCc-c-c--cccceeEEEcCEEEEcCCch-------hHHHHHHHHHHHHHHHHHcCCCcceEEEecCchh
Confidence 9999999865321 0 0 01347899999999984311 124799999999999999995 344 23334
Q ss_pred CC--cCccEEEEEEC-----CEEEEEEEeecHHHHHhCCCC
Q psy9573 652 IL--HPNRSALIFKK-----TKNIGFIGEIHPILQQKYDLP 685 (809)
Q Consensus 652 ~~--hPgrsA~I~~~-----g~~iG~iGelhP~vl~~~~i~ 685 (809)
++ |||++|+|.++ ++.||.+|++||.++++++|.
T Consensus 148 ~~~~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~ 188 (211)
T cd00768 148 FSPGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLY 188 (211)
T ss_pred hccccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhh
Confidence 45 99999999999 999999999999999999986
No 24
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....
Probab=99.87 E-value=7.3e-23 Score=184.56 Aligned_cols=95 Identities=27% Similarity=0.374 Sum_probs=84.5
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCccc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLC 124 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlc 124 (809)
++||+|+++++||++|||++|+||+|++.+||||||+|+.. .+++++..++.+++ .++++|||+.|+||||
T Consensus 1 i~vg~I~~~~~hp~sdkL~~~~Vd~G~~~~~Ivsg~~n~~~-~~~lv~~~~~~v~n--------~~~~~i~Gv~SeGMll 71 (95)
T PF01588_consen 1 IRVGKILEVEPHPNSDKLYVLKVDIGEEERQIVSGAKNVYE-PEVLVGKKVVVVAN--------LKPRKIRGVESEGMLL 71 (95)
T ss_dssp EEEEEEEEEEEETTSSSEEEEEEESSSSEEEEEESCTTTST-HHHHTTTEEEEETT--------SCBEEETTEEEESEE-
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEeCCceEEEEeccccccC-hhhhcceeEEEEEc--------cCCcEEEeccCCEEEE
Confidence 68999999999999999999999999966999999999999 77777777777875 5666999999999999
Q ss_pred CccccCCCCCCCceEEcCCCCCCCCc
Q psy9573 125 SEYDLKINNKNKYLFELPEDAPIGKN 150 (809)
Q Consensus 125 s~~eLGl~~~~~GI~~l~~~~~~G~~ 150 (809)
|+.| +++.+.||+.+|+++|+|++
T Consensus 72 s~~e--~~~~~~~ll~~~~~~~~G~~ 95 (95)
T PF01588_consen 72 SASE--LGDGSVGLLVLPDDAPPGED 95 (95)
T ss_dssp EEEC--STSSEEEEEEESSTS-TTSB
T ss_pred Eeec--cCCCCEEEEECCCCCCCCCC
Confidence 9999 77788999999999999985
No 25
>KOG2783|consensus
Probab=99.84 E-value=4.5e-21 Score=203.42 Aligned_cols=173 Identities=19% Similarity=0.310 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhc-CC----eeeeccCCCCcCccEEEEEECCEE--EEEEEeecHHHHHhCCCCCce-EEEEeehHHHhc
Q psy9573 629 DLKNDLENLFFPI-KL----NFLKINNSILHPNRSALIFKKTKN--IGFIGEIHPILQQKYDLPLAP-IFFEVDALELQK 700 (809)
Q Consensus 629 dlKg~le~ll~~l-gi----~~~~~~~~~~hPgrsA~I~~~g~~--iG~iGelhP~vl~~~~i~~~v-~~~El~l~~L~~ 700 (809)
++|..++.|...| |. +|.....|+.||.-.-+|+..|.. +--+|.+.-.+++.-|+.+.+ ++|.++||+|.+
T Consensus 229 ~lk~~l~~L~~~Lf~~~~~~rwV~~yfpft~ps~eleI~~~~~wlevlgcgvi~~~il~~ag~~~~igwafglgLerLAM 308 (436)
T KOG2783|consen 229 HLKQTLEGLCDELFGKEVEYRWVDAYFPFTHPSWELEIYFKGEWLEVLGCGVMRQRLLKRAGLNNYIGWAFGLGLERLAM 308 (436)
T ss_pred HHHHHHHHHHHHhccchhheeheeeEcccCCCCeEEEEEecCCcHhhhccchhHHHHHhhccccceeeeeeeccHHHHHH
Confidence 5777888877765 42 566777899999999999998872 333788888999999998654 899999998842
Q ss_pred -------------------------ccCCccccCCCCCCceeeEEEEEcC--CCCHHHHHHHHHhccCCCCcccceEEEE
Q psy9573 701 -------------------------RQIPNYIQISKFPNVVRDIVFIFNK--NINLQDVMDTMFFEKNNNSNCFIIQSIS 753 (809)
Q Consensus 701 -------------------------~~~~~~~~~skfP~~~RDlS~vv~~--~~~~~~i~~~i~~~~~~~~~~~~l~~v~ 753 (809)
...++|+|+|+||++.+|||||+|. +....++.++||..+++ ++++|+
T Consensus 309 ll~~IpDiRlfWs~DeRFlkqF~~g~I~~~FKp~SkYP~c~~DiSFWl~~~~~f~endf~~viR~V~gD-----lVesV~ 383 (436)
T KOG2783|consen 309 LLFDIPDIRLFWSFDERFLKQFSPGKIEPKFKPYSKYPPCYKDISFWLPQDKGFDENDFYDVIRTVAGD-----LVESVK 383 (436)
T ss_pred HHhcCcchheeeccchHHHHhcCcccccccccccccCCCcccceeEeeccccCCChhHHHHHHHHHhhh-----hhhhhh
Confidence 1124799999999999999999999 88999999999999999 999999
Q ss_pred EEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCcccC
Q psy9573 754 LFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLR 808 (809)
Q Consensus 754 lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~~~ii~~L~~~~~a~lR 808 (809)
++|.|+.++ .|++|+|||++||+++|+||++|||.+++++.+.+.+.|++++|
T Consensus 384 lid~F~hpK--tgk~S~CYRi~YrsmeR~LTq~EVn~iq~q~r~~~~~~l~VelR 436 (436)
T KOG2783|consen 384 LIDQFTHPK--TGKTSLCYRIVYRSMERALTQEEVNSIQSQIRSELVQSLGVELR 436 (436)
T ss_pred hhhhccCCc--cCceeeEEEEehHhhhhhhhHHHHHHHHHHHHHHHHHhhCeecC
Confidence 999999885 89999999999999999999999999999999999999999998
No 26
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.84 E-value=7.3e-21 Score=173.07 Aligned_cols=93 Identities=33% Similarity=0.509 Sum_probs=87.5
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcc-----cCCCEEEEEecCceecCcccCCceEEeeceeccee
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNI-----RVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIK 118 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~-----~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~ 118 (809)
++||+|+++++||++|+|.+|+|++|. +.+|||||++|+ ..|.+|++|. .|+++++||+.
T Consensus 1 ~~vg~I~~~~~~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~--------------~l~~~~~~g~~ 66 (99)
T cd02153 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAV--------------NLKPKKLRGVE 66 (99)
T ss_pred CEEEEEEEEEECCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEE--------------ecccccCCCee
Confidence 579999999999999999999999997 889999999999 9999999985 48999999999
Q ss_pred ccCcccCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 119 SYGLLCSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 119 S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
|+||+||+.|||+++++.||+.+++++++|+++
T Consensus 67 S~GMl~s~~~~g~~~~~~~i~~~~~~~~~G~~~ 99 (99)
T cd02153 67 SEGMLLSAEELGLEEGSVGILELPEDAPVGDRI 99 (99)
T ss_pred cccEEeeccccCCCCCceEEEECCCCCCCCCcC
Confidence 999999999999988889999999999999864
No 27
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.84 E-value=8e-20 Score=210.91 Aligned_cols=192 Identities=13% Similarity=0.136 Sum_probs=151.4
Q ss_pred cCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHH-Hhh-hcCC-----CCCCcEEeeCCCC----------------
Q psy9573 489 KISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSL-EKD-FSQN-----INNYPIELLNPIS---------------- 545 (809)
Q Consensus 489 ~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~-~~~-~~~~-----~~~~~i~L~NPis---------------- 545 (809)
.++...+..++.+.+|+++..+||+|+-+-.+-+.-. .+. |.|. +..+.+.+.+|-.
T Consensus 228 ~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he 307 (489)
T PRK04172 228 YPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHE 307 (489)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHh
Confidence 3455667788999999999999999997655554311 111 2221 0123455655431
Q ss_pred ------------------ccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeE
Q psy9573 546 ------------------KKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAV 607 (809)
Q Consensus 546 ------------------~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~ 607 (809)
...-+||+++.|++++.++.+ +..++++||+|+||+.+..+ .++..|..++++
T Consensus 308 ~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~---~~~p~rlFeiGrVFR~e~~d------~~~l~Ef~ql~~ 378 (489)
T PRK04172 308 HGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR---PEPPQKYFSIGRVFRPDTID------ATHLPEFYQLEG 378 (489)
T ss_pred ccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhc---CCCCeEEEEecceEcCCCCC------cccCCchheEEE
Confidence 123599999999999999873 34679999999999875422 234579999999
Q ss_pred eeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC---eeeeccCCCCcCccEEEEEECC---EEEEEEEeecHHHHHh
Q psy9573 608 IAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL---NFLKINNSILHPNRSALIFKKT---KNIGFIGEIHPILQQK 681 (809)
Q Consensus 608 ~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi---~~~~~~~~~~hPgrsA~I~~~g---~~iG~iGelhP~vl~~ 681 (809)
+++|. .++|+++||+++.++..+|+ .|++..+|++||+++|.|+++| +.||++|++||+++++
T Consensus 379 ~i~G~-----------~~~f~elkg~l~~ll~~lGi~~~~~~~~~~p~~~P~~~~~i~~~g~~w~eiG~~G~l~Pevl~~ 447 (489)
T PRK04172 379 IVMGE-----------DVSFRDLLGILKEFYKRLGFEEVKFRPAYFPFTEPSVEVEVYHEGLGWVELGGAGIFRPEVLEP 447 (489)
T ss_pred EEEeC-----------CCCHHHHHHHHHHHHHHhCCceEEEcCCcCCCCCCeEEEEEEECCCCeEEEEeccccCHHHHHH
Confidence 99993 56899999999999999997 5677788999999999999977 7899999999999999
Q ss_pred CCCCCceEEEEeehHHHhc
Q psy9573 682 YDLPLAPIFFEVDALELQK 700 (809)
Q Consensus 682 ~~i~~~v~~~El~l~~L~~ 700 (809)
|||+.||++|||++++|.+
T Consensus 448 ~gi~~~v~~~el~le~l~m 466 (489)
T PRK04172 448 LGIDVPVLAWGLGIERLAM 466 (489)
T ss_pred CCCCCceEEEEEcHHHHHH
Confidence 9999999999999999864
No 28
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=99.80 E-value=5.1e-20 Score=156.48 Aligned_cols=69 Identities=42% Similarity=0.728 Sum_probs=61.0
Q ss_pred ceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEE-eCCEEEEeCCCccCCCCcchhhhhhhhhhhcc
Q psy9573 408 RKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQ-KNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGF 476 (809)
Q Consensus 408 ~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~-~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGy 476 (809)
+++|.++.++++++||++++.+++.++|++|||+++. +++.|.|+||+||+||++++||||||||+|||
T Consensus 1 p~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR~yGY 70 (70)
T PF03484_consen 1 PKKITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIARIYGY 70 (70)
T ss_dssp -EEEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHHHHTG
T ss_pred CeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999987 67899999999999999999999999999999
No 29
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Probab=99.79 E-value=2.4e-19 Score=194.80 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=83.5
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceec--Ccc------------cCCceEEe
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLL--CIN------------KKKSFIIN 110 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp--~~~------------~~~~~~i~ 110 (809)
.+||+|++++||||||+|.+|+||. +||||||+|+++|++||+|++||.|| ++. +.++++|+
T Consensus 3 ~vv~kV~~i~php~Ad~L~v~~Vd~----~~vV~ga~n~~~Gd~Vv~a~~gs~Lp~~~~~~~~~~~~~~~~~g~~~~~Ik 78 (341)
T TIGR02306 3 AVMREIADLQPHPNADALELATVGG----WEVVVKKGEYRVGSDCVYFPEDSVLPTDAGLFRFLETRAKILDGKMRARVK 78 (341)
T ss_pred eEEEEEEEeeecCCCCceEEEEEeC----EEEEcCCCcCCCCCEEEEECCCCCCCCCCCcchhhccccccccccccceEe
Confidence 6899999999999999999999995 99999999999999999999999999 522 12334999
Q ss_pred eceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhccc
Q psy9573 111 IEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKF 157 (809)
Q Consensus 111 ~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l 157 (809)
++++||+.|+||+||+++|.--.... ....|+++.+.||.
T Consensus 79 ~~klRG~~SqGMlcs~~~~~~~~~~~-------~~~~g~d~~~~Lgi 118 (341)
T TIGR02306 79 TVRLRGEISQGIALPTGALTDGELLG-------GQEMDKDIAEMLGI 118 (341)
T ss_pred EEEeccEEEccEEechhhcCcccccc-------ccccCCchHHhhCc
Confidence 99999999999999998864321111 12346777776663
No 30
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.78 E-value=4.9e-18 Score=186.60 Aligned_cols=198 Identities=15% Similarity=0.188 Sum_probs=156.5
Q ss_pred CCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHh-hhcCC-------------CCCCcE-----------
Q psy9573 484 PITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEK-DFSQN-------------INNYPI----------- 538 (809)
Q Consensus 484 p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~-~~~~~-------------~~~~~i----------- 538 (809)
|......+...+.+....++|+.-.++||.|++|-..+.+.+.. .|++. .....|
T Consensus 37 pr~~~~~gk~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~ 116 (533)
T TIGR00470 37 PRLKFVYGKPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIE 116 (533)
T ss_pred CcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHH
Confidence 33334445566788889999999999999999999999876432 22211 000000
Q ss_pred ---------------------------------Eee------------------------CCCCccccccchhhHHHHHH
Q psy9573 539 ---------------------------------ELL------------------------NPISKKFNTMRSTLIGSLVN 561 (809)
Q Consensus 539 ---------------------------------~L~------------------------NPis~e~s~lR~SLlpgLL~ 561 (809)
+|+ -|. +...+|||++.|+++.
T Consensus 117 ~~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~-s~~~lLRTHTTpgqir 195 (533)
T TIGR00470 117 NLGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPE-STTLTLRSHMTSGWFI 195 (533)
T ss_pred HhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChH-hhCcccccCChhHHHH
Confidence 011 122 3356999999999999
Q ss_pred HHHH-HhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Q psy9573 562 NICY-NLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFF 639 (809)
Q Consensus 562 ~l~~-N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~ 639 (809)
+++. |.++. .++|+|++|+||+++.. + .++..+..++++++.| .+++|-|+||+++.|++
T Consensus 196 tL~~L~~~~~-~PiRIFsIGRVfRrD~~~D------aTHl~eFhQlEGLVVd-----------edVSf~DLKgvLe~LLr 257 (533)
T TIGR00470 196 TLSSIIDKRK-LPLKLFSIDRCFRREQRED------RSHLMTYHSASCVVVD-----------EEVSVDDGKAVAEGLLA 257 (533)
T ss_pred HHHHHhhcCC-CCeEEEeeeeEEecCCCCC------CccCceeeeEEEEEEC-----------CCCCHHHHHHHHHHHHH
Confidence 9997 66555 56999999999998842 2 3578899999999999 57899999999999999
Q ss_pred hcCC---eeeeccC--CCCcCccEEEEEECC------EEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhc
Q psy9573 640 PIKL---NFLKINN--SILHPNRSALIFKKT------KNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQK 700 (809)
Q Consensus 640 ~lgi---~~~~~~~--~~~hPgrsA~I~~~g------~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~ 700 (809)
.+|+ .|+++++ ++|.|+++|+|.+.+ ..||.+|++||+|+++|||+.|+++|||++++|..
T Consensus 258 ~LG~~~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~PV~AFGIGVERlAM 329 (533)
T TIGR00470 258 QFGFTKFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVERLAM 329 (533)
T ss_pred HhCCceEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCceEEEEecHHHHHH
Confidence 9995 5777655 889999999999865 58999999999999999999999999999999974
No 31
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.78 E-value=1e-17 Score=181.30 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=158.4
Q ss_pred CCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHh-hhc-CC-----CCCCcEEeeCCCCcccccc
Q psy9573 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEK-DFS-QN-----INNYPIELLNPISKKFNTM 551 (809)
Q Consensus 479 ip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~-~~~-~~-----~~~~~i~L~NPis~e~s~l 551 (809)
+..++|......+...+...+.+++|++|+++||+|+.++.+.+..... .++ |. +.++.+.| +++.+|
T Consensus 93 ~d~t~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI-----~~~~lL 167 (339)
T PRK00488 93 IDVTLPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI-----DDGLLL 167 (339)
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE-----cCCcee
Confidence 3444454434556677788899999999999999999999999887643 332 22 01245667 578999
Q ss_pred chhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHH
Q psy9573 552 RSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLK 631 (809)
Q Consensus 552 R~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlK 631 (809)
||++.|+++++++. + .+++++||+|+||+++..+ .++..+..++.+++.+ ..++|.++|
T Consensus 168 RThTSp~qir~L~~---~-~~Pirif~~G~VyR~D~~D------atH~~~FhQleglvvd-----------~~vtf~dLK 226 (339)
T PRK00488 168 RTHTSPVQIRTMEK---Q-KPPIRIIAPGRVYRNDSDD------ATHSPMFHQVEGLVVD-----------KNISFADLK 226 (339)
T ss_pred eccCcHHHHHHHHh---c-CCCeEEEEeeeEEEcCCCC------cccCcceeeEEEEEEe-----------CCCCHHHHH
Confidence 99999999999986 2 3579999999999988643 4677889999999998 468999999
Q ss_pred HHHHHHHHhc-C----CeeeeccCCCCcCccEEEEEEC-------------CE-EEEEEEeecHHHHHhCCCCCc---eE
Q psy9573 632 NDLENLFFPI-K----LNFLKINNSILHPNRSALIFKK-------------TK-NIGFIGEIHPILQQKYDLPLA---PI 689 (809)
Q Consensus 632 g~le~ll~~l-g----i~~~~~~~~~~hPgrsA~I~~~-------------g~-~iG~iGelhP~vl~~~~i~~~---v~ 689 (809)
|.|+.+++.+ | ++|+++..|+..|+...+|.+. |+ +||-+|.+||+|+++.|++.+ .+
T Consensus 227 ~~L~~fl~~~fg~~~~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gid~~~~~G~ 306 (339)
T PRK00488 227 GTLEDFLKAFFGEDVKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGIDPEEYSGF 306 (339)
T ss_pred HHHHHHHHHHcCCCCeEEecCCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCCCcccceEE
Confidence 9999999987 5 3688899999999999998773 32 678899999999999999743 68
Q ss_pred EEEeehHHHhc
Q psy9573 690 FFEVDALELQK 700 (809)
Q Consensus 690 ~~El~l~~L~~ 700 (809)
+|.+.+|+|..
T Consensus 307 AfG~GleRlaM 317 (339)
T PRK00488 307 AFGMGIERLAM 317 (339)
T ss_pred EEeecHHHHHH
Confidence 99999999974
No 32
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.74 E-value=2.8e-18 Score=146.38 Aligned_cols=68 Identities=41% Similarity=0.761 Sum_probs=64.2
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEe--CCEEEEeCCCccCCCCcchhhhhhhhhhhcc
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQK--NNIFLVIPPAHRFDLEIEEDIIEEIIRIYGF 476 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~--~~~~~v~vP~~R~DI~~~~DliEEIaR~yGy 476 (809)
+.+.++.+++++++|.+++.+++.++|++|||+++.. ++.|.|.+|+||+||.+++||||||||+|||
T Consensus 2 ~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 2 RTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVARIYGY 71 (71)
T ss_pred cEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcccHHHHHHHHHhCC
Confidence 5799999999999999999999999999999999754 3679999999999999999999999999998
No 33
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=99.69 E-value=2.9e-17 Score=150.99 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=83.8
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
.++||+|+++++||++++|++|+||+|.+.+|||||++|+ +++.+++|+.+++ ..+|+++++||+.|+||+
T Consensus 10 di~vg~I~~~~~~p~a~kL~~~~vd~G~~~~~iv~g~~~~----~~~~~l~g~~v~~-----~~nl~~~~~~Gv~S~GMl 80 (105)
T cd02800 10 DLRVGKVLEAERVEGSDKLLKLTVDLGEEERQIVSGIAKF----YPPEELVGKKVVV-----VANLKPRKLRGVESQGMI 80 (105)
T ss_pred eEEEEEEEEEEecCCCCcceEEEEEeCCeEEEEEeCcccc----cCHhHhccCceEe-----EeeECCccCCCeEeceEE
Confidence 5899999999999999999999999998789999999998 6899999999987 789999999999999999
Q ss_pred cCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
||+.+- ..-.++..+.++++|+.+
T Consensus 81 ~s~~~~----~~~~l~~~~~~~~~G~~i 104 (105)
T cd02800 81 LAAEDG----GKLKLLTPDEEVEPGSRV 104 (105)
T ss_pred EEecCC----CeEEEEeCCCCCCCcCCc
Confidence 998752 223456667888999765
No 34
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=99.69 E-value=9.7e-17 Score=147.49 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=79.7
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCccc-----CCCEEEEEecCceecCcccCCceEEeeceecce
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIR-----VGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI 117 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~ 117 (809)
.++||+|+++++||++++|.+|+||+|. +.+|||||++|+. .|++|++. . +|++++|||+
T Consensus 7 ~i~vg~I~~~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg~~~~~~~~~~~g~~v~~l------~--------nl~~~~~~G~ 72 (105)
T cd02799 7 DIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVL------C--------NLKPRKMRGV 72 (105)
T ss_pred EEEEEEEEEEEecCCCCccEEEEEEeCCCcEEEEEcCccccCCHHHhCCCEEEEE------E--------eeccceECCe
Confidence 4899999999999999999999999996 7899999999997 89999993 2 5999999999
Q ss_pred eccCcccCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 118 KSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 118 ~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
.|+||+|++.+.+ ..+.+++.++.++++|+.+
T Consensus 73 ~S~GMll~~~~~~--~~~~~~~~~~~~~~~G~~i 104 (105)
T cd02799 73 KSQGMVLCASNAD--HEKVELLEPPEGAKPGERV 104 (105)
T ss_pred eeceEEEEeccCC--CCcEEEEECCCCCCCCCEe
Confidence 9999995554433 2246799999999999865
No 35
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=99.68 E-value=2.6e-16 Score=159.57 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHCC-CCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecCCcEEEEe
Q psy9573 232 ALTPKWMKIRLEDSG-QKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISD 310 (809)
Q Consensus 232 ~~sp~~lq~rL~~~g-~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D 310 (809)
.+|-+.|.+|.++.+ +.+||++||+.|.++++|+.|+++||+||+.|+++++.++.+|.|.+|+++.-...++.+|++|
T Consensus 81 r~S~EALlrRv~kg~~lp~InpvVD~yNa~Sl~y~vPig~~D~d~~~g~lrL~~a~ggE~f~~lg~~~~~~~~geiv~~D 160 (229)
T COG3382 81 RPSAEALLRRVLKGNSLPRINPVVDIYNAASLKYAVPIGGYDADKIVGDLRLTLADGGETFDTLGAKNEPPLEGEIVLVD 160 (229)
T ss_pred CCcHHHHHHHHHcCCCccccchhhhhhhHHHHhhcCCcccccHHHhCCCceEEeccCCceeecccCCCCCCCCCcEEEEc
Confidence 356799999998875 8899999999999999999999999999999999999999999999998555445589999999
Q ss_pred CCceeE-ecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhC
Q psy9573 311 NFKIIS-LSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICG 389 (809)
Q Consensus 311 ~~~~ls-lagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~g 389 (809)
+.++++ ..++.+|..|.||++|+|+|+-+..-+ ++.-+.+..|++.++.++.+++|
T Consensus 161 d~G~~~r~~~~Rds~rT~vt~~Tk~~l~I~e~vp-----------------------~~~~~~l~~a~~~l~~~l~~~~g 217 (229)
T COG3382 161 DEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVP-----------------------GVEVEDLVEALDSLADLLEKLLG 217 (229)
T ss_pred CCCCeeeecccccceeeehhhccceEEEEEecCC-----------------------CccHHHHHHHHHHHHHHHHHhcC
Confidence 976655 778899999999999999988777433 47788899999999999999999
Q ss_pred Cc
Q psy9573 390 TS 391 (809)
Q Consensus 390 g~ 391 (809)
|.
T Consensus 218 G~ 219 (229)
T COG3382 218 GT 219 (229)
T ss_pred Cc
Confidence 97
No 36
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.
Probab=99.67 E-value=9.4e-17 Score=153.85 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=82.4
Q ss_pred CCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 43 SKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 43 ~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
-.++||+|+++++||++++|++|+||+|.+.+|||||+ .|.+++.+++|+.+++ ..+|++++|||+.|+||
T Consensus 40 ldi~Vg~I~eve~hp~adkL~v~~Vd~G~~~~qIvsg~----~~~~~~~~l~G~~v~~-----~~nlkp~k~~Gv~S~GM 110 (137)
T TIGR00399 40 VDLRVGKILKAERVEKSDKLLKLKLDLGDEKRQIVSGI----AGYYTPEELVGKKVIV-----VANLKPAKLFGVKSEGM 110 (137)
T ss_pred eeeEEEEEEEEeecCCCCcceEEEEEeCCceEEEEeCc----ccCcCHhHcCCCEEEe-----eEEecCccCCCeEeccE
Confidence 35899999999999999999999999998679999999 7999999999999997 78999999999999999
Q ss_pred ccCccccCCCCCCCce--EEcCCCCCCCCch
Q psy9573 123 LCSEYDLKINNKNKYL--FELPEDAPIGKNF 151 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI--~~l~~~~~~G~~~ 151 (809)
|||+.. +++ .+ +..+.++++|+.+
T Consensus 111 lls~~~----~~~-~~~l~~~~~~~~~G~~i 136 (137)
T TIGR00399 111 ILAAED----DGK-VLFLLSPDQEAIAGERI 136 (137)
T ss_pred EEEEec----CCC-eEEEecCCCCCCCcCCc
Confidence 999863 221 23 3345778889865
No 37
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=6.3e-16 Score=185.00 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=88.6
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
.++||+|+++++||++|+|.+|+||+|. +.+|||||++|+. +|.+++|+.+++ ..+|++++||||+|+||
T Consensus 552 d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~----~~~~l~g~~v~~-----~~nl~~~~~~Gv~S~gM 622 (648)
T PRK12267 552 ELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFY----PPEELVGKKVVV-----VANLKPAKLMGEESQGM 622 (648)
T ss_pred ceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccC----CHhHhCCCeEEE-----EEeecccccCCcccceE
Confidence 4899999999999999999999999996 7899999999987 899999999997 78999999999999999
Q ss_pred ccCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 123 LCSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
|||+.| +++.||+.+++++++|+++
T Consensus 623 l~s~~~----~~~~~l~~~~~~~~~G~~~ 647 (648)
T PRK12267 623 ILAAED----DGKLTLLTVDKEVPNGSKV 647 (648)
T ss_pred EEEecc----CCeEEEEeCCCCCCCcCCC
Confidence 999998 4567999999999999876
No 38
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=1.3e-15 Score=182.58 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=85.7
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeecee-cceeccCc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKK-YKIKSYGL 122 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~-rG~~S~GM 122 (809)
.++||+|+++++||++|+|.+|+||+|++.+|||||++|+ +++.+++|+++++ ..+||+++| ||+ |+||
T Consensus 577 di~vg~I~~~~~~p~~~~l~~~~vd~G~~~~~iv~g~~~~----~~~~~l~G~~v~~-----~~nlkp~~~~~Gv-S~gM 646 (673)
T PRK00133 577 DLRVAKIVEAEKVEGADKLLKLTLDLGEETRQVFSGIKSA----YDPEELVGKLVVM-----VANLAPRKMKFGV-SEGM 646 (673)
T ss_pred hcceeeeEeeecCCCCCccceeeEecCCceeEEEcCcccc----CCHHHHhcCeeEE-----EEeeccccccCCc-ccee
Confidence 4899999999999999999999999998789999999999 7999999999997 789999999 999 9999
Q ss_pred ccCccccCCCCCCCceEEcCC--CCCCCCch
Q psy9573 123 LCSEYDLKINNKNKYLFELPE--DAPIGKNF 151 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI~~l~~--~~~~G~~~ 151 (809)
|||++ ++++||+.|++ ++++|+++
T Consensus 647 l~~~~-----~~~~~i~~l~~~~~~~~G~~~ 672 (673)
T PRK00133 647 VLAAG-----PGGGDLFLLEPDEGAKPGMRV 672 (673)
T ss_pred EEEee-----cCCCcEEEecCCCCCCCCCcC
Confidence 99998 35568999976 78999876
No 39
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.55 E-value=1e-12 Score=148.03 Aligned_cols=195 Identities=15% Similarity=0.202 Sum_probs=158.2
Q ss_pred cCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH--hhh-cCC-----CCCCcEEeeCCCCc--------------
Q psy9573 489 KISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE--KDF-SQN-----INNYPIELLNPISK-------------- 546 (809)
Q Consensus 489 ~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~--~~~-~~~-----~~~~~i~L~NPis~-------------- 546 (809)
..+...+..++.+++|++|.++||+|+-+-+++..+.. +.+ .|. +.++..-|.+|-..
T Consensus 216 ~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~ 295 (492)
T PLN02853 216 EGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTV 295 (492)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHH
Confidence 34556778889999999999999999965556544432 222 232 13456778776433
Q ss_pred --------------------cccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEe
Q psy9573 547 --------------------KFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIA 606 (809)
Q Consensus 547 --------------------e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~ 606 (809)
...+|||+..+.-.+.+..+.++..+++++|-+|+||+++.-+ .++..|..++-
T Consensus 296 He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iD------atH~~eFhQ~E 369 (492)
T PLN02853 296 HESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVD------RTHLAEFHQVE 369 (492)
T ss_pred HhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCC------cccCccceeEE
Confidence 4689999999999999997765556789999999999988754 46888999999
Q ss_pred EeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC---eeeeccCCCCcCccEEEEEEC--C--EEEEEEEeecHHHH
Q psy9573 607 VIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL---NFLKINNSILHPNRSALIFKK--T--KNIGFIGEIHPILQ 679 (809)
Q Consensus 607 ~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi---~~~~~~~~~~hPgrsA~I~~~--g--~~iG~iGelhP~vl 679 (809)
+++.+ ..++|-+++|+++.++..+|+ .|+|+..|+..|+....++.. | -+||-+|.+||+|+
T Consensus 370 G~vvd-----------~~~t~~~L~g~l~~f~~~lg~~~~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl 438 (492)
T PLN02853 370 GLVCD-----------RGLTLGDLIGVLEDFFSRLGMTKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEML 438 (492)
T ss_pred EEEEe-----------CCCCHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHH
Confidence 99998 578999999999999999984 688999999999999888775 5 27899999999999
Q ss_pred HhCCCCCc--eEEEEeehHHHhc
Q psy9573 680 QKYDLPLA--PIFFEVDALELQK 700 (809)
Q Consensus 680 ~~~~i~~~--v~~~El~l~~L~~ 700 (809)
+..|++.+ +++|.+.++++..
T Consensus 439 ~~~Gi~~~~~~~A~GlGleRlaM 461 (492)
T PLN02853 439 LPMGLPEDVNVIAWGLSLERPTM 461 (492)
T ss_pred HhCCCCCcceEEEEEecHHHHHH
Confidence 99999654 8999999999964
No 40
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.55 E-value=8.7e-15 Score=176.82 Aligned_cols=91 Identities=24% Similarity=0.308 Sum_probs=82.3
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCccc-----CCCEEEEEecCceecCcccCCceEEeeceecce
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIR-----VGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI 117 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~ 117 (809)
.++||+|+++++||+||||.+|+||+|+ +++|||||++|+. .|.+|+|+ .+||+++|||+
T Consensus 644 dlrVg~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~--------------~nlkp~klrGv 709 (801)
T PLN02610 644 DIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVL--------------CNLKPAAMRGI 709 (801)
T ss_pred eeEEEEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEE--------------EEecccccCCc
Confidence 3899999999999999999999999997 7899999999998 89999998 36999999999
Q ss_pred eccCcccCccccCCCCCCCc--eEEcCCCCCCCCchh
Q psy9573 118 KSYGLLCSEYDLKINNKNKY--LFELPEDAPIGKNFY 152 (809)
Q Consensus 118 ~S~GMlcs~~eLGl~~~~~G--I~~l~~~~~~G~~~~ 152 (809)
+|+|||||++ +++++| |+.+++++++|+++.
T Consensus 710 ~S~GMll~a~----~~~~~~~~ll~~~~~~~~G~~v~ 742 (801)
T PLN02610 710 KSQAMVLAAS----NSDHTKVELVEPPESAAVGERVT 742 (801)
T ss_pred ccceeEEecc----cCCCCceEEEeCCCCCCCCCEEE
Confidence 9999999987 345556 888899999998874
No 41
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=6.1e-13 Score=143.50 Aligned_cols=212 Identities=18% Similarity=0.175 Sum_probs=164.8
Q ss_pred hhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH--hhh-cCC-----CCCCc
Q psy9573 466 IIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE--KDF-SQN-----INNYP 537 (809)
Q Consensus 466 liEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~--~~~-~~~-----~~~~~ 537 (809)
+..+..+-.=+..+..++|......+...+...+.+++++++.++||+|+-.. .+..+.. +.+ .|. +.++.
T Consensus 83 ~~~~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp-~IE~d~~NFDaLn~P~dHPARdmqDT 161 (335)
T COG0016 83 EAAGLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGP-EIETDFYNFDALNIPQDHPARDMQDT 161 (335)
T ss_pred HHHHHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCC-cccccccchhhhcCCCCCCcccccce
Confidence 34444455667777777777655667777888899999999999999999876 3333321 122 222 12345
Q ss_pred EEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCC
Q psy9573 538 IELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQ 617 (809)
Q Consensus 538 i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~ 617 (809)
.-+.+ +.+..+|||+--|--.+.+..|.. +++|+|-+|+||+.|..+ .++..+..++-+++.+
T Consensus 162 Fy~~~--~~~~~lLRTHTs~vq~R~l~~~~~---~P~k~~~~grvyR~D~~D------aTHs~~FhQiEGlvvd------ 224 (335)
T COG0016 162 FYLKD--DREKLLLRTHTSPVQARTLAENAK---IPIKIFSPGRVYRNDTVD------ATHSPEFHQIEGLVVD------ 224 (335)
T ss_pred EEEcC--CCCceeecccCcHhhHHHHHhCCC---CCceEecccceecCCCCC------cccchheeeeEEEEEe------
Confidence 55655 333679999999998888887643 279999999999988654 5678899999999888
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHhcC-----CeeeeccCCCCcCccEEEEEECCE----EEEEEEeecHHHHHhCCC-CCc
Q psy9573 618 WGEENRNIDYFDLKNDLENLFFPIK-----LNFLKINNSILHPNRSALIFKKTK----NIGFIGEIHPILQQKYDL-PLA 687 (809)
Q Consensus 618 w~~~~~~~df~dlKg~le~ll~~lg-----i~~~~~~~~~~hPgrsA~I~~~g~----~iG~iGelhP~vl~~~~i-~~~ 687 (809)
..++|-+|||+++.++..++ ++|+++..||..|+-..+|++.+. +||-+|.+||+|++..|+ +.+
T Consensus 225 -----~~~s~~~Lkg~L~~f~~~~fg~~~~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~ 299 (335)
T COG0016 225 -----KNISFADLKGTLEEFAKKFFGEDVKVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEE 299 (335)
T ss_pred -----CCccHHHHHHHHHHHHHHhcCCCcceEeecCCCCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCCCCc
Confidence 57899999999999999986 368899999999999999999753 688899999999999995 555
Q ss_pred e--EEEEeehHHHhc
Q psy9573 688 P--IFFEVDALELQK 700 (809)
Q Consensus 688 v--~~~El~l~~L~~ 700 (809)
+ ++|.+.+|+|..
T Consensus 300 ~~GfAfGlGlERlAM 314 (335)
T COG0016 300 YSGFAFGLGLERLAM 314 (335)
T ss_pred ceEEEEeecHHHHHH
Confidence 4 599999999974
No 42
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.46 E-value=3.1e-12 Score=144.92 Aligned_cols=195 Identities=14% Similarity=0.185 Sum_probs=156.6
Q ss_pred cCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHH--Hhhh-cCC-----CCCCcEEeeCCCCc--------------
Q psy9573 489 KISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSL--EKDF-SQN-----INNYPIELLNPISK-------------- 546 (809)
Q Consensus 489 ~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~--~~~~-~~~-----~~~~~i~L~NPis~-------------- 546 (809)
..+...+..++.+++|+++.++||+|+-+-+++..+. .+.+ .|. +.++.+-|.+|-..
T Consensus 224 ~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk 303 (494)
T PTZ00326 224 GGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVK 303 (494)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHH
Confidence 3456677888999999999999999997665554432 1222 232 13456778777443
Q ss_pred ----------------------cccccchhhHHHHHHHHHHHhcC-----CCCCeeEEEEeeEEecCCCCCCCCCccCCc
Q psy9573 547 ----------------------KFNTMRSTLIGSLVNNICYNLKR-----KLERIRLFEIANVYLHDKFIKDSPFTVSGY 599 (809)
Q Consensus 547 ----------------------e~s~lR~SLlpgLL~~l~~N~~~-----~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~ 599 (809)
...+|||+..+...+.++.+.+. ..+++|+|-+|+||+.+..+ .++.
T Consensus 304 ~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~D------atH~ 377 (494)
T PTZ00326 304 KVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLD------ATHL 377 (494)
T ss_pred HHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCC------CCcC
Confidence 35799999999999999987542 23579999999999988654 4688
Q ss_pred cceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC---eeeeccCCCCcCccEEEEEECC----EEEEEEE
Q psy9573 600 KELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL---NFLKINNSILHPNRSALIFKKT----KNIGFIG 672 (809)
Q Consensus 600 ~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi---~~~~~~~~~~hPgrsA~I~~~g----~~iG~iG 672 (809)
.|..++.+++.| ...+|-+++|++..++..+|+ .|+|+..|+.+|+....+++.+ -.||-+|
T Consensus 378 ~eFhQ~Eg~vi~-----------~~~s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~G 446 (494)
T PTZ00326 378 AEFHQVEGFVID-----------RNLTLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSG 446 (494)
T ss_pred ceeEEEEEEEEe-----------CCCCHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcC
Confidence 999999999998 356899999999999999985 5899999999999888888853 3789999
Q ss_pred eecHHHHHhCCCCC--ceEEEEeehHHHhc
Q psy9573 673 EIHPILQQKYDLPL--APIFFEVDALELQK 700 (809)
Q Consensus 673 elhP~vl~~~~i~~--~v~~~El~l~~L~~ 700 (809)
.+||++++..|++. ++++|.+.++++..
T Consensus 447 m~rpevL~~~Gi~~~~~~~A~GlGleRlaM 476 (494)
T PTZ00326 447 IFRPEMLRPMGFPEDVTVIAWGLSLERPTM 476 (494)
T ss_pred ccCHHHHHhcCCCCcceEEEEEecHHHHHH
Confidence 99999999999964 48999999999974
No 43
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.
Probab=99.38 E-value=6.6e-13 Score=122.34 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=73.6
Q ss_pred CeEEEEEEEEeeCCCC-CceeEEEEecCC-ceEEEEeCCCccc-----CCCEEEEEecCceecCcccCCceEEeeceecc
Q psy9573 44 KIIIGKIINIIKHPDI-DNFNICKVDTYK-NILDIVCNIPNIR-----VGLKVPCAIIGSSLLCINKKKSFIINIEKKYK 116 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~a-d~L~~~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG 116 (809)
.+++|+|+++++||++ ++|.+|+|++|. +.+|||+|..+.. .|.+|++. .++|++||||
T Consensus 10 di~vG~V~~~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v--------------~Nlkp~k~~G 75 (107)
T cd02798 10 DLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAV--------------VNFPPKQIAG 75 (107)
T ss_pred eeEEEEEEEEEECCCcccceEEEEEEecCccceehhhhhhhcCCHHHhcCCcEEEE--------------eCCCCceecc
Confidence 4899999999999999 999999999998 8899999988876 79999885 3699999999
Q ss_pred eeccCcccCccccCCCCCCCceEEc--CCCCCCCCc
Q psy9573 117 IKSYGLLCSEYDLKINNKNKYLFEL--PEDAPIGKN 150 (809)
Q Consensus 117 ~~S~GMlcs~~eLGl~~~~~GI~~l--~~~~~~G~~ 150 (809)
++|+||+|++.. ++.++..+ +.++++|+.
T Consensus 76 ~~S~gm~l~~~~-----~~~~~~~~~~~~~~~~G~~ 106 (107)
T cd02798 76 VLSEVLVLGADD-----EGGEVVLLVPDREVPNGAK 106 (107)
T ss_pred eeccEEEEEEEc-----CCCcEEEecCCCCCCCcCC
Confidence 999999987642 23344333 567888875
No 44
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.22 E-value=3.2e-11 Score=137.81 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=71.3
Q ss_pred CCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHH
Q psy9573 711 KFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINN 790 (809)
Q Consensus 711 kfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~ 790 (809)
.||+++|||||++|+++++++|.+.|++. + +++++++||+|+|+++++|+||+|||++||..+ .-+.+..
T Consensus 357 ~fp~~~RDis~~v~~~~~~~~i~~~i~~~--~-----~l~~v~~fDvY~g~~i~~g~kSla~r~~~~~~~---~~~~~~~ 426 (437)
T PRK08655 357 NLEKYVRDISVLFPKGADPEVILDLLDNL--K-----HVFDIEIIDVYSGKQIEEGYLSVTFRITVFGKE---DLENVEE 426 (437)
T ss_pred cCCccceeEEEEECCCCCHHHHHHHHhcC--C-----CcceEEEEEEeCCCCCCCCceEEEEEEEEEccc---cHHHHHH
Confidence 69999999999999999999999999987 6 999999999999999999999999999999976 3444433
Q ss_pred HHHHHHHHHHHhcCcccCC
Q psy9573 791 AINALINSVCKNFNAKLRN 809 (809)
Q Consensus 791 ~~~~ii~~L~~~~~a~lR~ 809 (809)
+-+.+|..+|.
T Consensus 427 --------~~~~~~~~~~~ 437 (437)
T PRK08655 427 --------ILEGIGGKIRY 437 (437)
T ss_pred --------HHhhcCCEeCC
Confidence 34478998884
No 45
>KOG2241|consensus
Probab=99.20 E-value=1.9e-11 Score=125.86 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=74.4
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCccc-----CCCEEEEEecCceecCcccCCceEEeeceecce
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIR-----VGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI 117 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~ 117 (809)
.+.||+|+++.+||+||.|++.+||+|+ +++|||+|--.+. .|.+|+|- .++|++|||||
T Consensus 98 DiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~Vvvl--------------cNLKPakmRgv 163 (255)
T KOG2241|consen 98 DIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVL--------------CNLKPAKMRGV 163 (255)
T ss_pred eEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEE--------------ecccccccccc
Confidence 5899999999999999999999999999 9999999987653 67777774 47999999999
Q ss_pred eccCcc-cCccccCCCCCCC--ceEEcCCCCCCCCch
Q psy9573 118 KSYGLL-CSEYDLKINNKNK--YLFELPEDAPIGKNF 151 (809)
Q Consensus 118 ~S~GMl-cs~~eLGl~~~~~--GI~~l~~~~~~G~~~ 151 (809)
+|+||+ |+..+ ++. -++..|.++.+|..+
T Consensus 164 ~S~gMvlcaSs~-----d~~~VE~l~pP~gs~pGdRv 195 (255)
T KOG2241|consen 164 KSQGMVLCASSP-----DKSVVEPLAPPAGSKPGDRV 195 (255)
T ss_pred ccceeEEecCCc-----ccceeeeccCCCCCCCCCee
Confidence 999995 87654 332 356777888888766
No 46
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=99.19 E-value=2.5e-11 Score=117.34 Aligned_cols=103 Identities=19% Similarity=0.402 Sum_probs=76.9
Q ss_pred HHHHhhccCCCCCHHHHHHHHHh-cCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcc
Q psy9573 5 ENWLRTIINPKLSSNDLANLLTM-SGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNI 83 (809)
Q Consensus 5 ~~WL~e~v~~~~~~~el~~~Lt~-~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~ 83 (809)
..|..+|++-- +|+-=-|+. .+++=-.|.+....+ .+++|+|.++.+||+||+|.+|.|++|.-.+++||....|
T Consensus 85 kdw~~~~l~~a---~ev~fflnt~~~ldRGeI~d~~~aV-~~vvGEV~Sv~~hp~aD~L~v~vvn~G~r~~tVVTN~~~v 160 (219)
T COG2517 85 KDWSTKFLEQA---DEVRFFLNTILNLDRGEINDPVIAV-DIVVGEVMSVGKHPNADKLLVTVVNIGGRAVTVVTNDLDV 160 (219)
T ss_pred chHHHHHHHHH---HHHHHHHhchhhccccccCCcceeE-EEEeeeeeecccCCCCCceEEEEEecCCeEEEEEeccccc
Confidence 36777776642 333212221 122222333333332 2899999999999999999999999998669999999999
Q ss_pred cCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCc
Q psy9573 84 RVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSE 126 (809)
Q Consensus 84 ~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~ 126 (809)
++|++|+||+ || ++.+-|+.|+||+|-.
T Consensus 161 reg~~vaVAl----LP-----------Pr~F~gvvSeGMFlg~ 188 (219)
T COG2517 161 REGDRVAVAL----LP-----------PRNFFGVVSEGMFLGA 188 (219)
T ss_pred ccCCEEEEEe----cC-----------hhHhccccccceeecc
Confidence 9999999996 55 6789999999999977
No 47
>TIGR02222 chap_CsaA export-related chaperone CsaA. This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.
Probab=99.06 E-value=3e-10 Score=104.61 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=69.7
Q ss_pred CeEEEEEEEEeeCCCCCc-eeEEEEecCC--ceEEEEeCCCc-cc----CCCEEEEEecCceecCcccCCceEEeeceec
Q psy9573 44 KIIIGKIINIIKHPDIDN-FNICKVDTYK--NILDIVCNIPN-IR----VGLKVPCAIIGSSLLCINKKKSFIINIEKKY 115 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~-L~~~~v~~g~--~~~~iv~ga~n-~~----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~r 115 (809)
.+.||+|.++++||+++| |.+.+||.|. +.+||++|-.. +. .|.+|++. .++++++||
T Consensus 8 dlrvg~I~~~~~~p~a~k~L~~l~vd~G~~~~~r~ivsgi~~~~~~e~L~gk~v~~v--------------~Nl~p~k~~ 73 (107)
T TIGR02222 8 DLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAV--------------VNFPPKQIA 73 (107)
T ss_pred hheeEEEEEEeecCCcccceeEEEEEecCcCCcceEehhhhhhCCHHHhCCCeEEEE--------------ECCCCceeC
Confidence 478999999999999998 9999999996 47999999544 43 58888875 469999999
Q ss_pred ceeccCcccCccccCCCCCCCc-e--EEcCCCCCCCCch
Q psy9573 116 KIKSYGLLCSEYDLKINNKNKY-L--FELPEDAPIGKNF 151 (809)
Q Consensus 116 G~~S~GMlcs~~eLGl~~~~~G-I--~~l~~~~~~G~~~ 151 (809)
|+.|+||++++.. ++| + +..++++++|+.+
T Consensus 74 G~~S~gMil~~~~------~~~~~~l~~~~~~~~~G~~v 106 (107)
T TIGR02222 74 GFLSEVLVLGVID------EQGRVVLLQPDRPVPNGTKI 106 (107)
T ss_pred CccccEEEEEEEC------CCCeEEEecCCCCCCCcCCc
Confidence 9999999865532 223 3 4445678889764
No 48
>PRK10089 tRNA-binding protein; Provisional
Probab=98.98 E-value=1.2e-09 Score=101.65 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=68.6
Q ss_pred CeEEEEEEEEeeCCCCCce-eEEEEecCC--ceEEEEeCCCccc-----CCCEEEEEecCceecCcccCCceEEeeceec
Q psy9573 44 KIIIGKIINIIKHPDIDNF-NICKVDTYK--NILDIVCNIPNIR-----VGLKVPCAIIGSSLLCINKKKSFIINIEKKY 115 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L-~~~~v~~g~--~~~~iv~ga~n~~-----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~r 115 (809)
.+.+|+|.++++||++++| .+.+||+|. +.+||++|-.... .|.+|++. .++|+++||
T Consensus 13 dlrvg~I~~~~~~p~a~kL~~~l~vd~G~~~~~r~i~sgl~~~~~~eel~gk~v~~v--------------~Nlkp~~~~ 78 (112)
T PRK10089 13 DIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAV--------------VNFPPKQIA 78 (112)
T ss_pred heeeEEEEEEEEcCCcCcceEEEEEEecCccCcceEehhhcccCCHHHHccCcEEEE--------------ECCCcceec
Confidence 4889999999999999999 999999997 3899999854432 57777775 369999999
Q ss_pred ceeccCcc-cCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 116 KIKSYGLL-CSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 116 G~~S~GMl-cs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
|++|+||+ |+..+-| .--++..+.++++|+.+
T Consensus 79 G~~S~gmil~~~~~~~----~~~l~~p~~~~~~G~~i 111 (112)
T PRK10089 79 GFMSEVLVLGFEDEDG----EVVLLTPDRPVPNGVKL 111 (112)
T ss_pred CccccEEEEEEEcCCC----eEEEecCCCCCCCcCCc
Confidence 99999996 5433211 11234445678888754
No 49
>PHA02142 putative RNA ligase
Probab=98.63 E-value=7.3e-08 Score=105.74 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=84.9
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCc-------------cc-CCceEEe
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCI-------------NK-KKSFIIN 110 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~-------------~~-~~~~~i~ 110 (809)
+.|-+|..++||||||.+.+|+|+ -+++|.....+++|+.|+++.+.|.||.. ++ .+++.|+
T Consensus 10 v~v~~i~~i~pi~~Ad~ie~a~V~----gw~vVV~kg~f~~GD~~vY~eiDS~lP~~~~~~~~l~~~~~~~~g~~~~Ri~ 85 (366)
T PHA02142 10 ASMRKIADLQPIPGADAIEVATID----GWEVVVKKGEFRVGDDCVYFEIDSLLPTDNPAFRFLETRARIYDGKMRARIK 85 (366)
T ss_pred EEEEEEeeecccCCCCceeEEEEC----CEEEEEeccccccCCeEEEecccccccCCchhhhhhhccccccCCcccceEE
Confidence 678999999999999999999999 59999999999999999999999999943 12 2578999
Q ss_pred eceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcc
Q psy9573 111 IEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYK 156 (809)
Q Consensus 111 ~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~ 156 (809)
..|+||+.||||++..+++...+..+| .+.|+++.+.||
T Consensus 86 t~klRG~iSQGl~lpl~~f~~~~~~~g-------~~~g~~~~~~LG 124 (366)
T PHA02142 86 TIKLRGQISQGIALPTGAFTVGELLGG-------QEMDKTLDQMLG 124 (366)
T ss_pred EEEEeeEEeeeEEecccccchhhhhcc-------cccCcchHHhhC
Confidence 999999999999999887765432222 346888887777
No 50
>KOG2784|consensus
Probab=98.39 E-value=1.8e-06 Score=92.47 Aligned_cols=226 Identities=14% Similarity=0.199 Sum_probs=155.7
Q ss_pred CCCccCCCC-cchhhhhhhhhhhccCCCCCCCCCc-----cccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH
Q psy9573 453 PPAHRFDLE-IEEDIIEEIIRIYGFENIPISLPIT-----VSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE 526 (809)
Q Consensus 453 vP~~R~DI~-~~~DliEEIaR~yGydnip~~~p~~-----~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~ 526 (809)
=|.|-.+++ -+-||--|..--=-|..++-++-.. +...+...+..+.+...|+++..+||.|+-|-.|+.....
T Consensus 165 Gp~Fst~l~k~eTdLT~emi~~gsw~dl~FK~YNF~a~G~~p~~G~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFW 244 (483)
T KOG2784|consen 165 GPNFSTSLTKLETDLTSEMIASGSWKDLKFKPYNFNAEGVPPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFW 244 (483)
T ss_pred CCcccchHHHHhhhccHHHhccCchhhccCcccCcccCCCCCCCCccchHHHHHHHHHHHHHHccccccccccchhhccc
Confidence 355555543 3556655554443333333222111 1123456677888999999999999999999888876531
Q ss_pred --hhh-cCC-----CCCCcEEeeCCCCc----------------------------------cccccchhhHHHHHHHHH
Q psy9573 527 --KDF-SQN-----INNYPIELLNPISK----------------------------------KFNTMRSTLIGSLVNNIC 564 (809)
Q Consensus 527 --~~~-~~~-----~~~~~i~L~NPis~----------------------------------e~s~lR~SLlpgLL~~l~ 564 (809)
+++ .|. +..+..-|.+|.+. ...+|||+-..---+.+.
T Consensus 245 NFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy 324 (483)
T KOG2784|consen 245 NFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLY 324 (483)
T ss_pred cchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHH
Confidence 222 222 12346778888642 245788765543333332
Q ss_pred HHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC-
Q psy9573 565 YNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL- 643 (809)
Q Consensus 565 ~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi- 643 (809)
.=...+..+.++|-|-+||+...-+ .++..|...+-+++++ ...+.-|+-|+++.++.++|+
T Consensus 325 ~LAk~~f~p~K~FSIDrVFRNEtvD------aTHLAEFHQVEGviad-----------~gltLgdLig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 325 RLAKKGFKPAKYFSIDRVFRNETVD------ATHLAEFHQVEGVIAD-----------KGLTLGDLIGILMEFFTKLGAT 387 (483)
T ss_pred HHHhCCCCcccccchhhhhhccccc------hHHHHHHhhhceeeec-----------CCCcHHHHHHHHHHHHhccCCc
Confidence 2224567789999999999876554 4677899999999998 578899999999999999996
Q ss_pred --eeeeccCCCCcCccEEEEEECCE----EEEEEEeecHHHHHhCCCCCceEEEEeeh
Q psy9573 644 --NFLKINNSILHPNRSALIFKKTK----NIGFIGEIHPILQQKYDLPLAPIFFEVDA 695 (809)
Q Consensus 644 --~~~~~~~~~~hPgrsA~I~~~g~----~iG~iGelhP~vl~~~~i~~~v~~~El~l 695 (809)
.|+|..+|+-||.-..-.+..|. .+|--|..||+.+...|++..+.+..-+|
T Consensus 388 nlrfKPaynpYtepsmeif~yh~gl~kwvEvgnSg~frPeml~pMGLp~Dv~vl~~gl 445 (483)
T KOG2784|consen 388 NLRFKPAYNPYTEPSMEIFSYHHGLFKWVEVGNSGMFRPEMLLPMGLPMDVVVLAWGL 445 (483)
T ss_pred cccccCCCCCCCCceeEEEEeccccceEEEEcCCCCCCHhHhhccCCCccceeeeecc
Confidence 68888888888876555555552 68999999999999999998765554444
No 51
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=5.6e-07 Score=96.59 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=160.5
Q ss_pred CCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhhcCC-------------CCCCc-----------
Q psy9573 483 LPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDFSQN-------------INNYP----------- 537 (809)
Q Consensus 483 ~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~~~~-------------~~~~~----------- 537 (809)
.|......+...+.+....++|+.-..+||.|++|-..++++.. +.|++. .....
T Consensus 36 YPRl~f~~Gk~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~evykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i 115 (536)
T COG2024 36 YPRLKFETGKPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQI 115 (536)
T ss_pred CCccccccCCcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHHHHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHH
Confidence 34444444556677888999999999999999999999887642 222211 00000
Q ss_pred ---------------------------------------------------------EEeeCCCCccccccchhhHHHHH
Q psy9573 538 ---------------------------------------------------------IELLNPISKKFNTMRSTLIGSLV 560 (809)
Q Consensus 538 ---------------------------------------------------------i~L~NPis~e~s~lR~SLlpgLL 560 (809)
++=+-|. +..-.||+++..|..
T Consensus 116 ~~i~~d~~de~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~-s~tlTLRSHMTsGWF 194 (536)
T COG2024 116 EEIGIDEPDEKVERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPE-SSTLTLRSHMTSGWF 194 (536)
T ss_pred HHhcCCCchhhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccCcchHHHHHHHhChHHhhcCCC-CCceehhhhccccee
Confidence 0011233 334579999999999
Q ss_pred HHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 561 NNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 561 ~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
=+++.=++|..+++++|-|-+||+....+.+| +.-.-..-++++.+ .+++.-+-|.+.|.||+.
T Consensus 195 ItLs~i~~r~~~PlklFSIDRCFRREQ~ED~s-----hLmtYhSASCVvvd-----------e~vtvD~GKaVAEglL~q 258 (536)
T COG2024 195 ITLSEILKREDPPLKLFSIDRCFRREQREDAS-----HLMTYHSASCVVVD-----------EDVTVDDGKAVAEGLLRQ 258 (536)
T ss_pred eeHHHHHhccCCCceeeehhHHhhhhhhcchh-----hhhhhccceEEEEc-----------CcccccccHHHHHHHHHH
Confidence 99998888988899999999999876543222 11123345566666 356666999999999999
Q ss_pred cCC---eeeec--cCCCCcCccEEEEEE-------------CCE-EEEEEEeecHHHHHhCCCCCceEEEEeehHHHhc-
Q psy9573 641 IKL---NFLKI--NNSILHPNRSALIFK-------------KTK-NIGFIGEIHPILQQKYDLPLAPIFFEVDALELQK- 700 (809)
Q Consensus 641 lgi---~~~~~--~~~~~hPgrsA~I~~-------------~g~-~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~- 700 (809)
+|+ .|++. ...+|.||-+.+++- +|. .|..||.-.|--+.+|||+.||-=+.+..++|..
T Consensus 259 fGFe~F~FrpDEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALaeY~Id~pVMNLGlGVERlaMI 338 (536)
T COG2024 259 FGFEKFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAEYGIDYPVMNLGLGVERLAMI 338 (536)
T ss_pred hCccceeeccccccccccCCCccceEEEecccccccccccCCCcEEEEeecccChHHHHHcCCCCceeecchhHHHHHHH
Confidence 997 46653 346777887777753 233 6888999999999999999999999999999863
Q ss_pred ------ccCCccccCCCCCCceeeEEEEEcC
Q psy9573 701 ------RQIPNYIQISKFPNVVRDIVFIFNK 725 (809)
Q Consensus 701 ------~~~~~~~~~skfP~~~RDlS~vv~~ 725 (809)
-..-.|-++..+-.+.|||+=.+.-
T Consensus 339 l~g~~DVR~mvYpqi~ew~lSD~diA~mi~v 369 (536)
T COG2024 339 LHGADDVRSMVYPQIYEWRLSDRDIARMIRV 369 (536)
T ss_pred HhCchHHhhhhcccccccccchHHHHhhhhh
Confidence 1223566666777889999866544
No 52
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=8.1e-06 Score=76.50 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=65.5
Q ss_pred CCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCC-ceEEEEEEEEeCCCCCCCHHHHHHH
Q psy9573 713 PNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDN-EKSFAFRCILQDPKKTLKNNIINNA 791 (809)
Q Consensus 713 P~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~g-kkSl~~rl~~~~~~rTLt~~ev~~~ 791 (809)
-...||+|.+++++++.+-|..++.-.. .+.++++.|+|+|++++++ ++|+|||++..+.+ ...+|.+-
T Consensus 81 ~~~v~DvSvlf~~~vDpEvil~avkllk-------~~vd~~I~DvY~G~~i~ede~~siT~Ri~~f~~d---c~~~ie~E 150 (171)
T COG4937 81 EKKVIDVSVLFKKDVDPEVILNAVKLLK-------KMVDIEIIDVYEGEKIEEDEYKSITFRIYGFNKD---CLKNIEKE 150 (171)
T ss_pred heEEEEEEEEecCCCCHHHHHhHHHhhh-------heeEEEEEEeecCCcCCCCceeeEEEEEEEeChh---hhhhHHHH
Confidence 4468999999999999999999887543 6899999999999999999 59999999998866 33445554
Q ss_pred HHHHHHHHHHhcCcccC
Q psy9573 792 INALINSVCKNFNAKLR 808 (809)
Q Consensus 792 ~~~ii~~L~~~~~a~lR 808 (809)
+-+++. .+|.++|
T Consensus 151 ~l~i~~----g~gc~~r 163 (171)
T COG4937 151 FLKIIK----GIGCKER 163 (171)
T ss_pred HHHHHh----ccCceee
Confidence 444444 5677666
No 53
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=96.73 E-value=0.01 Score=67.78 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCC---CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNI---NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~---~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+.+.+.+++.+...||+|+.|-.|...+..... +... .++.+++..+ +.+.-+||+.+.|++.+.++.|.+
T Consensus 21 ~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~~--- 96 (412)
T PRK00037 21 WQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHKL--- 96 (412)
T ss_pred HHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCCC---
Confidence 4567888999999999999999999877654332 1110 1456778777 677889999999999999998744
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
.++|+|++|+||+.+... ....+|..+.++=+.|.
T Consensus 97 ~p~r~~~~g~vfR~e~~~------~gr~ref~Q~g~ei~g~ 131 (412)
T PRK00037 97 QPFKLYYIGPMFRYERPQ------KGRYRQFHQFGVEVIGS 131 (412)
T ss_pred CCeEEEEEcCccccCCCC------CCcccceEEcCeeeeCC
Confidence 569999999999865332 12467888888877774
No 54
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=96.67 E-value=0.021 Score=61.13 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhc-CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS-QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
..+.+.+++.+...||.|+.|-.|...+...... ....++.+++..+ +.+.-+||+.+.|++.+.++.|......++|
T Consensus 6 ~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 6 RYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 4578889999999999999999999887654321 1112456788776 4566799999999999999987654234699
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
+|.+|+||+..... ...++|..++++=+.|.. ....| .++-.++..+++.+|+
T Consensus 85 ~~y~g~vfR~e~~~------~g~~re~~Q~g~Eiig~~--------~~~~d-aE~i~l~~~~l~~lg~ 137 (261)
T cd00773 85 LYYIGPVFRYERPQ------KGRYREFYQVGVEIIGSD--------SPLAD-AEVIALAVEILEALGL 137 (261)
T ss_pred EEEEcCEEecCCCC------CCCccceEEeceeeeCCC--------ChHHH-HHHHHHHHHHHHHcCC
Confidence 99999999865432 235678888888777741 11122 3566666667777763
No 55
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=96.52 E-value=0.022 Score=64.82 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc-CC---CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS-QN---INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~-~~---~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+++.+.+++.+...||+|+.|-+|...+.+.... .. ..++.+++..+ +.+.-+||+.+.+++.+.++.|.+...
T Consensus 17 ~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~ 95 (397)
T TIGR00442 17 WQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENKLLLP 95 (397)
T ss_pred HHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhcccccC
Confidence 45678889999999999999999998877654432 11 01345667666 556778999999999999987765444
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.+.|+|.+|+||+.+... ....+|..++++=+.|... ...| .++-.++..++..+|+
T Consensus 96 ~p~r~~y~g~vfR~e~~~------~gr~ref~Q~g~eiig~~~--------~~~d-~E~i~l~~e~l~~lg~ 152 (397)
T TIGR00442 96 KPFKLYYIGPMFRYERPQ------KGRYRQFHQFGVEVIGSDS--------PLAD-AEIIALAAEILKELGI 152 (397)
T ss_pred CCeEEEEEcCeecCCCCC------CCcccceEEcCeeeeCCCC--------HHHH-HHHHHHHHHHHHHcCC
Confidence 469999999999865322 1246788888887777431 1112 2455555666666664
No 56
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=96.38 E-value=0.027 Score=56.36 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHH-hCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC--CC
Q psy9573 497 YQSLFSIRHQLA-FADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR--KL 571 (809)
Q Consensus 497 ~~~~~~lr~~L~-~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~--~~ 571 (809)
.++.+.+++.+. ..||+|+.+-.|++.+....-+. .-....+.+.+.-. +.-+||++.-|++....+..... +.
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~-~~~~L~pt~~~~~~~~~~~~~~~~~~~ 81 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGD-EEYCLRPTSEPGIYSLFKNEIRSSYRD 81 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTT-EEEEE-SSSHHHHHHHHHHHEEBHGGG
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeeccc-ccEEeccccccceeeeecceeeecccc
Confidence 457888999999 99999999999999987665311 00134677766544 34599999999999999987654 22
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC-eee
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL-NFL 646 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi-~~~ 646 (809)
-++++|++|++|+.......+ -...+|..+.-+...+.. . ...-.+.++......+++.||+ .++
T Consensus 82 LP~~~~~~g~~fR~E~~~~~g---l~R~reF~~~e~~~f~~~-~------~~~~~~~~~~~~~~~i~~~lgl~~~~ 147 (173)
T PF00587_consen 82 LPLKLYQIGTCFRNEARPTRG---LFRLREFTMDEMHIFCTP-E------QSEEEFEELLELYKEILEKLGLEPYR 147 (173)
T ss_dssp SSEEEEEEEEEEBSSSSSBST---TTS-SEEEEEEEEEEESS-H------HHHHHHHHHHHHHHHHHHHTTSGCEE
T ss_pred CCeEEeecccccccccccccc---cceeeEeeeeceEEEeCC-c------ccHHHHHHHHHHHHHHHHHcCCceEE
Confidence 369999999999866321000 113468888877777632 0 0123478899999999999998 653
No 57
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.11 E-value=0.053 Score=59.48 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
.....+++++.+...||.|+.|-+|...+.+........++.+++..+ +.+.-+||+-+.+++.+.++.|.+ .....|
T Consensus 13 ~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~-~~~~~r 90 (311)
T PF13393_consen 13 RERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLN-LPRPKR 90 (311)
T ss_dssp HHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCG-SSSSEE
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcC-cCCCce
Confidence 345688899999999999999999988776544322112467899998 889999999999999999999976 456799
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
+|-+|+||+..... ...++|...+++=+-|.
T Consensus 91 ~~y~g~vfR~~~~~------~g~~re~~Q~g~Eiig~ 121 (311)
T PF13393_consen 91 YYYIGPVFRYERPG------KGRPREFYQCGFEIIGS 121 (311)
T ss_dssp EEEEEEEEEEETTT------TTBESEEEEEEEEEESS
T ss_pred EEEEcceeeccccC------CCCCceeEEEEEEEECC
Confidence 99999999865431 12568999999988884
No 58
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=95.97 E-value=0.066 Score=59.04 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
...+.+.+++.+...||.|+.|-+|...+.+........++.+++..+- .+.-+||+-+.+++.+.++.+.+....+.|
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r 89 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPLPLR 89 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCCCeE
Confidence 3456788899999999999999888887665433211124567777763 567799999999999998877654445699
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
+|.+|.||+..... ...++|...+++=+-|.. ....|. ++-.++..++..+|+
T Consensus 90 ~~y~g~VfR~~~~~------~gr~re~~Q~g~Eiig~~--------~~~ada-Evi~l~~~~l~~lg~ 142 (314)
T TIGR00443 90 LCYAGNVFRTNESG------AGRSREFTQAGVELIGAG--------GPAADA-EVIALLIEALKALGL 142 (314)
T ss_pred EEEeceEeecCCCc------CCCcccccccceEEeCCC--------CchhHH-HHHHHHHHHHHHcCC
Confidence 99999999865432 225678888888777732 123453 666666667777775
No 59
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=95.79 E-value=0.093 Score=60.46 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=89.2
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCC---CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNI---NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RK 570 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~---~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~ 570 (809)
.+.+.+.+++.+...||+|+.|-+|-..+.+..- +... .++..++..+ +.+.-+||+-+.|++.+.++.|.. ..
T Consensus 21 ~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~~ 99 (430)
T CHL00201 21 WQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDYH 99 (430)
T ss_pred HHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC-CCCEEEeCCCCcHHHHHHHHHcccccc
Confidence 4456788888899999999999999988765442 2110 1345667665 455678999999999998766644 33
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
..++|+|++|.||+.+... ....+|..+.++=+-|... ...| .++-.++...|..+|+
T Consensus 100 ~~p~R~~y~g~vfR~e~~q------~GR~Ref~Q~g~EiiG~~~--------~~aD-~Evi~l~~~~l~~lGl 157 (430)
T CHL00201 100 SNLQRLWYSGPMFRYERPQ------SGRQRQFHQLGIEFIGSID--------ARAD-TEVIHLAMQIFNELQV 157 (430)
T ss_pred CCCeEEEEEcceecCCCCc------CCccceeEEeceEEECCCC--------hhhH-HHHHHHHHHHHHHcCC
Confidence 3568999999999865321 1245788888887777432 1223 3445555555555553
No 60
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.74 E-value=0.087 Score=57.18 Aligned_cols=119 Identities=16% Similarity=0.148 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+.+.+.+++.+...||+|+.|-+|-.-+.... .. .++.+++..+ +.+.-+||+-+.+++.+.++.|.++...+.|+
T Consensus 23 ~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-~~--~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r~ 98 (281)
T PRK12293 23 REIENVASEILYENGFEEIVTPFFSYHQHQSI-AD--EKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEHKKW 98 (281)
T ss_pred HHHHHHHHHHHHHcCCeEeeccceeehhhhcc-cc--hhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCceeE
Confidence 44567788889999999999999965443211 11 2456788777 66678999999999999998876544456999
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|-+|+||+.. .+|..++++=+-|.. +..++-.++...|+.+|+
T Consensus 99 ~Y~g~vfR~~------------~rEf~Q~GvEliG~~------------~~~Evi~la~~~l~~lgl 141 (281)
T PRK12293 99 FYIQPVFRYP------------SNEIYQIGAELIGEE------------DLSEILNIAAEIFEELEL 141 (281)
T ss_pred EEeccEEecC------------CCcccccCeEeeCCC------------CHHHHHHHHHHHHHHcCC
Confidence 9999999742 257788888777742 234888888888888875
No 61
>PLN02530 histidine-tRNA ligase
Probab=95.73 E-value=0.089 Score=61.60 Aligned_cols=132 Identities=12% Similarity=0.084 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+.+.+.+++.+...||+|+.|-.|-..+.+..- +....++.+++..+ +.+.=+||+-+.|++.+.++.|.+....++
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~ 165 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSLPL 165 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCCCe
Confidence 4456788888899999999999999886654332 22112346677665 455669999999999999998865443469
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|+|.+|+||+.+... ....+|..++++=+-|... ...|. |+-.++..+|..+|+
T Consensus 166 r~~y~g~vfR~e~~q------~gr~REf~Q~giEiiG~~~--------~~aDa-Evi~l~~~~l~~lgl 219 (487)
T PLN02530 166 KWFAIGQCWRYERMT------RGRRREHYQWNMDIIGVPG--------VEAEA-ELLAAIVTFFKRVGI 219 (487)
T ss_pred EEEEEcCEEcCcCCC------CCCccceEEcCeeEeCCCC--------cchhH-HHHHHHHHHHHHcCC
Confidence 999999999865321 2246788888887777421 12333 444555556666665
No 62
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.70 E-value=0.12 Score=58.70 Aligned_cols=110 Identities=15% Similarity=0.028 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+...+++++.+...||.|+.|-.|-.-+.+..- +.......+++.++.+.+.-+||+=+.+++.+.++.|.+. ..+.
T Consensus 24 ~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~-~~p~ 102 (392)
T PRK12421 24 IERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNR-EGVA 102 (392)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCC-CCce
Confidence 3456788999999999999999999665543221 2211235678888876667789999999999998877544 3469
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
|+|-+|+||+.+... ....+|..++++=+-|.
T Consensus 103 R~~Y~g~VfR~~~~~------~gr~rEf~Q~GvEiiG~ 134 (392)
T PRK12421 103 RLCYAGSVLHTLPQG------LFGSRTPLQLGAELYGH 134 (392)
T ss_pred EEEEeeeEEEcCCCc------CCCcCccceeceEEeCC
Confidence 999999999754321 12457888999888884
No 63
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.60 E-value=0.11 Score=59.24 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc-CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS-QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.....+++++.+...||.|+.|-+|-..+.+.... ....+..+++..+.+...-+||+-+.+++.+.++.+.++...++
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 99 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGPL 99 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCCe
Confidence 34567788888999999999999998766543321 11124567787765667789999999999999998875544579
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|+|.+|+||+.+... ...++|..++++=+-|... ...|. |+-.++..++..+|+
T Consensus 100 r~~y~g~vfR~~~~~------~gr~ref~Q~g~EiiG~~~--------~~aDa-Evi~l~~~~l~~lgl 153 (391)
T PRK12292 100 RLCYAGNVFRAQERG------LGRSREFLQSGVELIGDAG--------LEADA-EVILLLLEALKALGL 153 (391)
T ss_pred EEEeeceeeecCCCc------CCCccchhccceEEeCCCC--------chHHH-HHHHHHHHHHHHcCC
Confidence 999999999865321 1246788888887777421 12232 444555555555553
No 64
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=94.89 E-value=0.25 Score=56.83 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-c--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-S--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~ 572 (809)
.+.+.+++++.+...||.|+.|-.|-..+.+... . ....+..+++..+ +...=+||+-+.+++.+.++.|.+.. .
T Consensus 21 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~-~ 98 (423)
T PRK12420 21 RNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIR-L 98 (423)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCC-C
Confidence 3456778888899999999999999887655331 1 1112346788877 45567999999999999999875433 3
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++|+|.+|+||+..... ...++|..++++=+-|... ...| .++-.++-..++.+|+
T Consensus 99 p~r~~y~g~vfR~~~~~------~gr~rE~~Q~g~EiiG~~~--------~~ad-aEvi~la~~~l~~lg~ 154 (423)
T PRK12420 99 PFKRYEIGKVFRDGPIK------QGRFREFIQCDVDIVGVES--------VMAE-AELMSMAFELFRRLNL 154 (423)
T ss_pred CeeEEEEcceECCCCCC------CCccceeEECCeeeECCCC--------Cccc-HHHHHHHHHHHHHCCC
Confidence 69999999999864321 1246788888887777321 2233 3455555556666664
No 65
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=94.08 E-value=0.25 Score=51.59 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhc-CCC-CCCcEEeeCCC---CccccccchhhHHHHHHHHHHHhcC-C
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS-QNI-NNYPIELLNPI---SKKFNTMRSTLIGSLVNNICYNLKR-K 570 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~-~~~-~~~~i~L~NPi---s~e~s~lR~SLlpgLL~~l~~N~~~-~ 570 (809)
..+.+.+++.+...||+|+.+-.+...+....-. ... .+....+..+- ..+.-+||+..-+++....+.+... .
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~~ 85 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYR 85 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccch
Confidence 4577888899999999999999999888654422 110 12344555442 1355689999999999988876543 2
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
..+++++++|+||+.+.....+ ....+|..+..+-+.|... ....-+.++......++..+|+.+
T Consensus 86 ~lP~r~~~~g~~fR~E~~~~~g---l~R~reF~q~e~~~~~~~~-------~~~~~~~e~~~~~~~~l~~lgl~~ 150 (235)
T cd00670 86 ALPLRLDQIGPCFRHEPSGRRG---LMRVREFRQVEYVVFGEPE-------EAEEERREWLELAEEIARELGLPV 150 (235)
T ss_pred hcCeeeeeecccccCCCCCCCC---ChhheeeeeceEEEEcCHH-------HHHHHHHHHHHHHHHHHHHcCCcE
Confidence 3469999999999865431000 0123677788887777321 011236788888999999998754
No 66
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=93.77 E-value=0.59 Score=50.46 Aligned_cols=113 Identities=15% Similarity=0.040 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
...+.+|+.|...||.||-|-.+++... ... .+.+.+..........||+|---.+-..++.+. -++|
T Consensus 6 ~i~~~ir~~f~~~gf~ev~tP~l~~~~~----~~~--~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~------~~vf 73 (269)
T cd00669 6 KIIKAIRDFMDDRGFLEVETPMLQKITG----GAG--ARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL------DRVF 73 (269)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEeccCC----ccc--cceEEeeecCCCCcEEeecCHHHHHHHHHhcCC------CcEE
Confidence 4678999999999999999999985421 111 223444221124455778665444333333332 2899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||+||+.++.. ..+..|.+++-+-+.. .|+.|+...+|.++..+
T Consensus 74 ~i~~~fR~e~~~------~~hl~EF~~le~e~~~-------------~~~~dvm~~~e~lv~~i 118 (269)
T cd00669 74 EINRNFRNEDLR------ARHQPEFTMMDLEMAF-------------ADYEDVIELTERLVRHL 118 (269)
T ss_pred EEecceeCCCCC------CCcccceeEEEEEEec-------------CCHHHHHHHHHHHHHHH
Confidence 999999976432 3467788888876554 37888888888777643
No 67
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=93.31 E-value=1 Score=50.92 Aligned_cols=128 Identities=9% Similarity=-0.020 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.....+++++.+...||.|+.|-+|-..+.+... .....+..+++..+ +...-+||+-+.+++.+....| +. ..+.
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~-~~-~~p~ 83 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIAT-AG-GEPA 83 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHc-CC-CCCe
Confidence 4457889999999999999999999877654332 22111345677777 4556799999999999987665 33 3468
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|+|-+|+||+.+.. .++|.+++++=+-|.... ...|. |+-.++...+..+|+
T Consensus 84 R~~Y~g~VfR~~~g---------r~rEf~Q~GvEiiG~~~~-------~~aDa-Evi~l~~~~L~~lgl 135 (373)
T PRK12295 84 RYAYLGEVFRQRRD---------RASEFLQAGIESFGRADP-------AAADA-EVLALALEALAALGP 135 (373)
T ss_pred EEEEEccEEECCCC---------CCCcceEeeEEeeCCCCC-------ccchH-HHHHHHHHHHHHcCC
Confidence 99999999986522 468888998877773210 11232 445555556677764
No 68
>PLN02972 Histidyl-tRNA synthetase
Probab=93.14 E-value=0.93 Score=55.28 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=78.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
.+...+.+++.+...||.|+.|-.|-..+.+......+.+..+++..+ +.+.-+||+-+.+++.+.++.|.. .++|
T Consensus 344 re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~-gGr~LaLRPDlTvPiAR~vA~n~~---~p~K 419 (763)
T PLN02972 344 REKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNGI---TSFK 419 (763)
T ss_pred HHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECC-CCCEEEeCCCChHHHHHHHHhCCC---Ccce
Confidence 345677888889999999999999976665433211111345677776 445669999999999999998742 3589
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
.|.+|+||+.+... ...++|..++++=+.|.
T Consensus 420 rYyiG~VFR~e~pq------kGR~REF~Q~G~EIIG~ 450 (763)
T PLN02972 420 RYQIAKVYRRDNPS------KGRYREFYQCDFDIAGV 450 (763)
T ss_pred EEEeccEEecCCCC------CCCCccceEEeEEEEcC
Confidence 99999999865321 22468999999988884
No 69
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=92.72 E-value=0.92 Score=49.68 Aligned_cols=135 Identities=7% Similarity=-0.053 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+.+++.+...||+|+.|-.+...+....-+. ...++...+.. ..+.-+||++-.|++....+.+.. ...-
T Consensus 33 ~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~~L 110 (298)
T cd00771 33 RNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYRDL 110 (298)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchhhC
Confidence 455677788888999999999999999987654221 00133455521 234568999999999888776543 2233
Q ss_pred CeeEEEEeeEEecCCCCCCCCCcc--CCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTV--SGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~--~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++|++++|.||+..... .+. .-.+|..+..+-+.+... .....+.++-..+..+++.+|+
T Consensus 111 Plr~~~~g~vfR~E~~~----~~~Gl~R~reF~q~e~~i~~~~e-------~~~~e~~e~l~~~~~~l~~lgl 172 (298)
T cd00771 111 PLRLAEFGTVHRYEQSG----ALHGLTRVRGFTQDDAHIFCTPD-------QIKEEIKGVLDLIKEVYSDFGF 172 (298)
T ss_pred CeEEEEecCcccCCCCC----CCCCccccccEEECCEEEEeCCc-------chHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999865331 000 123577676665554210 1122455788888888888886
No 70
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.23 E-value=1.4 Score=50.55 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCC----CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNI----NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~----~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+...+.+|+.+...||.|+-|-.|-.-+.+....+.. .++......- +...=.||+-+.+++.+.+..|.....
T Consensus 21 ~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~ 99 (429)
T COG0124 21 REYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDLP 99 (429)
T ss_pred HHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhcccccc
Confidence 44578889999999999999999998887765432221 1233344444 556668999999999999999976666
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.++|+|=+|.||+.+... ..-.+|.+++++=+-|... ..+|. ++-.++..+++.+|+
T Consensus 100 ~p~k~yy~g~vfRyErPQ------~GR~RqF~Q~g~E~iG~~~--------~~~DA-Evi~l~~~~l~~lGi 156 (429)
T COG0124 100 KPLKLYYFGPVFRYERPQ------KGRYRQFYQFGVEVIGSDS--------PDADA-EVIALAVEILEALGI 156 (429)
T ss_pred CCeeEEEecceecCCCCC------CCCceeeEEcCeEEeCCCC--------cccCH-HHHHHHHHHHHHcCC
Confidence 779999999999865432 3357899999988888532 23343 555666777888886
No 71
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=92.09 E-value=0.49 Score=57.33 Aligned_cols=137 Identities=11% Similarity=0.031 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC-CC-CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ-NI-NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~-~~-~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
.+.+.+.+++.+...||+|+.|-.|.+.+....-+. .. .++...+... +.+.=+||+...|+.....+.+.+. ..-
T Consensus 273 ~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~r~~~~~~~s~~~l 351 (638)
T PRK00413 273 RRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTES-DGEEYALKPMNCPGHVQIYKQGLRSYRDL 351 (638)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecC-CCcEEEEecCCcHHHHHHHhCcCCChhhC
Confidence 456788888999999999999999999987654221 10 1233444332 4566799999999999998877653 233
Q ss_pred CeeEEEEeeEEecCCCCC-CCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIK-DSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~-~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++|+|++|.||+.+.... .+ ....+|..+.++=+-|... ....++.++-.....+++.+|+
T Consensus 352 P~r~~~~g~~fR~E~~~~~~G---l~R~reF~q~~~~~~g~~~-------~~~~e~~eii~l~~~~~~~lg~ 413 (638)
T PRK00413 352 PLRLAEFGTVHRYEPSGALHG---LMRVRGFTQDDAHIFCTPE-------QIEEEVKKVIDLILDVYKDFGF 413 (638)
T ss_pred CceeeeccCeecCCCCCCCcC---cceeeeeEEeeEEEEcCHH-------HHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999998653210 00 0123677777776666310 0112457777777888888886
No 72
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=91.92 E-value=0.18 Score=59.89 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=64.4
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEE-eCCEEEEeCCCccCCCCcchhhhhhhhhhhccC-CCC
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQ-KNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFE-NIP 480 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~-~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGyd-nip 480 (809)
+.|.++...+++++|.+++++++.++|...|++++. ++..+.+.+++.|.|...-.=|+-|++-++|-. ++|
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~l~~~l~~~G~e~~~~~D~ileieiTpNR~D~ls~~GiARelaa~~~~~~~~p 75 (552)
T PRK09616 2 PVIRVNKDDLERLIGIDLEDDELEDLLPMLKCEVEEIEDDEIKIEFNPDRPDLLSVEGLARALRGFLGIETGLP 75 (552)
T ss_pred CEEEEcHHHHHHHHCCCCCHHHHHHHHHHcCCccccCCCceEEEEcCCCchhhhhHHHHHHHHHHHhCCCCCCC
Confidence 468999999999999999999999999999999973 345799999999999999999999999999865 344
No 73
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=91.54 E-value=1.3 Score=52.92 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
.+++.+.+++.+...||+|+.+-.|...+....-+ ..-.++..++..... +.-+||++--+.+...++..... +.-
T Consensus 50 ~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~-~~l~LrPt~e~~~~~~~~~~~~s~~~L 128 (565)
T PRK09194 50 LRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHG-RDFVLGPTHEEVITDLVRNEIKSYKQL 128 (565)
T ss_pred HHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCC-CEEEECCCChHHHHHHHHhhhhhcccC
Confidence 45678888999999999999999999888764321 100134566766443 34589996666666555554432 223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
++++|++|.+|+.+... +.. ..+|..+..+-+.|.... .....+.++......+++.||+.|.
T Consensus 129 P~r~yqi~~~fR~E~rp-----~~Gl~R~reF~q~d~~~f~~~~~------~a~~~~~~~~~~~~~i~~~lgl~~~ 193 (565)
T PRK09194 129 PLNLYQIQTKFRDEIRP-----RFGLMRGREFIMKDAYSFHADEE------SLDETYDAMYQAYSRIFDRLGLDFR 193 (565)
T ss_pred CeEEEEeeCCccCCCCC-----CCcccccccEEEeeEEEEcCChH------HHHHHHHHHHHHHHHHHHHhCCccE
Confidence 69999999999865221 111 246777777766663110 0122356677888999999997653
No 74
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=91.27 E-value=1.6 Score=48.44 Aligned_cols=113 Identities=19% Similarity=0.109 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee---CCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL---NPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~---NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+.+.+|+.|...||.||-|-.+++...-. ..+...+. +.....-..|++|----+=..++... -
T Consensus 27 ~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~------~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~------~ 94 (335)
T PF00152_consen 27 AILQAIREFFDKRGFIEVDTPILTSSTCEG------GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL------E 94 (335)
T ss_dssp HHHHHHHHHHHHTT-EEE---SEESSSSSS------SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH------S
T ss_pred HHHHHHHHHHHhCCceEEcCceeeccccCc------cccccccccchhhhcccceecCcChHHHHhhhccccc------h
Confidence 467899999999999999998888764211 13455665 33333455788886664444444322 5
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
++||||.||+.++.. +..+..|.++|-+=+++ .|++++-..+|.++..
T Consensus 95 ~vf~i~~~FR~E~~~-----~~rHl~EFtmLE~e~a~-------------~~~~~lm~~~e~li~~ 142 (335)
T PF00152_consen 95 RVFEIGPCFRNEESR-----TRRHLPEFTMLEWEMAF-------------ADYDDLMDLIEELIKY 142 (335)
T ss_dssp EEEEEEEEE-BSSSC-----BTTBSSEEEEEEEEEET-------------SSHHHHHHHHHHHHHH
T ss_pred hhhheecceeccCcc-----cccchhhhhhhhhcccc-------------CcHHHhHHHHHHHHHH
Confidence 799999999976541 13466799999887776 4788877777776654
No 75
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=91.21 E-value=0.68 Score=39.76 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=43.9
Q ss_pred EEEEEcCCCCeEEecCCe-eeee-------------cCCcEEEEeCCceeEecccccCccceeecCCceEEE
Q psy9573 280 LNIRWGNIGETIKISNDL-IIKI-------------DKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYL 337 (809)
Q Consensus 280 i~vr~a~~~e~~~~L~~~-~~~l-------------~~~~lvi~D~~~~lslagi~g~~~s~v~~~T~~ill 337 (809)
+++|...+|++|.+.++. ..+| .+..+++++++++++++|+--++...++++|+.+-|
T Consensus 1 l~iR~r~~gdri~~~g~~~~k~lKk~~~e~kIP~~~R~~~Pll~~~~~iv~v~g~~~~~~~~~~~~~~~~~i 72 (74)
T PF11734_consen 1 LTIRFRQPGDRIRPAGRGGSKKLKKLFQEAKIPPWQRDRLPLLCDGGEIVWVPGLRVSERFSADPNTKGWRI 72 (74)
T ss_dssp EEEEC--TTSEEEBTTSSSEEEHHHHHHHCT--HHHCCCSEEEEETTEEEEETTTEEBCCGC-SSSS--EEE
T ss_pred CEEEecCCCCEEEECCCCCCchHHHHHHHcCCCHHHHCcEEEEEECCEEEEEeCeeeChhheecCCCCcEEE
Confidence 578888999999997764 3343 367899999999999999999999999999988744
No 76
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=90.96 E-value=0.48 Score=50.66 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc--CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK--RKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~--~~~ 571 (809)
.+++.+.+++.+...||+|+.+-.|.+.+....-+. ...++...+...-. +.-+||++.-+.+...++.... +..
T Consensus 34 ~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~-~~l~LrPt~e~~~t~~~~~~i~s~~~L 112 (255)
T cd00779 34 LKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHG-KEFLLGPTHEEVITDLVANEIKSYKQL 112 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCC-CeEEEecCCcHHHHHHHHhccccHhhC
Confidence 455677788888899999999999999887654211 10134456654322 3348999844444444443221 233
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
++++|++|.||+.+..+ +.. ..+|..+..+-..|..... ....+.++..+.+.+++.||+.+.
T Consensus 113 -Plr~~~~~~~FR~E~~~-----~~Gl~R~reF~q~e~~~~~~~~~~------a~~~~~~i~~~~~~il~~Lgl~~~ 177 (255)
T cd00779 113 -PLNLYQIQTKFRDEIRP-----RFGLMRGREFLMKDAYSFDIDEES------LEETYEKMYQAYSRIFKRLGLPFV 177 (255)
T ss_pred -CHHHHhCcceecCCCCC-----CCceeeeeeEeHhhheeccCCHHH------HHHHHHHHHHHHHHHHHHcCCcEE
Confidence 59999999999865221 011 2356555555544421100 122355788888899999998654
No 77
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=90.36 E-value=2.2 Score=45.90 Aligned_cols=139 Identities=11% Similarity=0.030 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCC--C-CCcEEeeCCCC---ccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNI--N-NYPIELLNPIS---KKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~--~-~~~i~L~NPis---~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+++.+.+++.+...||+|+.+-.|.+.+....-+... . ++...+...-. ++.-+||++.-+.+....+.++.
T Consensus 35 ~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s 114 (264)
T cd00772 35 LDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKS 114 (264)
T ss_pred HHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhh
Confidence 45567778888899999999999999988764422110 0 12233321111 13458999999999988877654
Q ss_pred -CCCCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcC-Ce
Q psy9573 569 -RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK-LN 644 (809)
Q Consensus 569 -~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lg-i~ 644 (809)
+.. +++++++|.||+.+..+ +.. ..+|..+..+-..+.... ....-+-.+....+.+++.+| +.
T Consensus 115 ~~~L-Plrl~~~~~~fR~E~r~-----~~Gl~R~reF~~~e~~~~~~~~e------~a~~e~~~~~~~~~~i~~~l~~lp 182 (264)
T cd00772 115 WKDL-PQHLNQIGNKFRDEIRP-----RFGFLRAREFIMKDGHSAHADAE------EADEEFLNMLSAYAEIARDLAAID 182 (264)
T ss_pred hhcc-CeeEEEEeCeEeCcCCC-----CCCcceeeEEEEeeeEEecCCHH------HHHHHHHHHHHHHHHHHHhcCCcc
Confidence 334 59999999999865321 011 235665655544432110 112236667777799999999 65
Q ss_pred ee
Q psy9573 645 FL 646 (809)
Q Consensus 645 ~~ 646 (809)
+.
T Consensus 183 ~~ 184 (264)
T cd00772 183 FI 184 (264)
T ss_pred EE
Confidence 53
No 78
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=90.02 E-value=0.89 Score=54.29 Aligned_cols=136 Identities=6% Similarity=-0.063 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC--CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN--INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~--~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
.+.+.+.+++.+...||+|+.|-.|.+.+....-+.. -.++...+.. ...+.-+|||.-.|++......+... +.-
T Consensus 203 ~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~~~s~~~l 281 (563)
T TIGR00418 203 RNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSSLRSYRDL 281 (563)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCcCCChHHC
Confidence 4567888899999999999999999988765542110 0122333332 23356689999999999999887642 223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCcc--CCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTV--SGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~--~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++|+|++|.+|+..... ... .-.+|..+..+-+.|.. + .....|.++......+++.+|+
T Consensus 282 P~rl~~~g~~fR~E~~g----~~~Gl~R~reF~q~~~~~~~~~-~------~~~~e~~~~i~~~~~~~~~lgl 343 (563)
T TIGR00418 282 PLRIAELGYSHRYEQSG----ELHGLMRVRGFTQDDAHIFCTE-D------QIKEEFKNQFRLIQKVYSDFGF 343 (563)
T ss_pred CceeeEeccccCCCCCc----CCcCcccccceEEeeeEEEcCH-H------HHHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999865321 000 02357777766555421 0 0123355566666677777775
No 79
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=89.64 E-value=2.9 Score=49.94 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchh----hHHHHHHHHHHHhcC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRST----LIGSLVNNICYNLKR 569 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~S----LlpgLL~~l~~N~~~ 569 (809)
.+++.+.+|+.|...||+|+.+-.|...+..+.-+. .-.++..++.....+ .=+||++ +. .++....... +
T Consensus 50 ~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~-~l~LrPT~Ee~~t-~~~~~~i~sy-r 126 (568)
T TIGR00409 50 LKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGR-EFVLGPTHEEVIT-DLARNEIKSY-K 126 (568)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCC-EEEEcCCCcHHHH-HHHHHHHhhc-c
Confidence 456788889999999999999999999766543211 001345677665433 4589997 33 3333222221 3
Q ss_pred CCCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 570 KLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 570 ~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+. ++++|.+|.+|+.+... +.. ..+|..+..+-..+... .+ ....+-.+......+|+.||+.|.
T Consensus 127 ~L-Plrlyqi~~~fR~E~rp-----r~Gl~R~REF~~~d~~~f~~~~-~~-----a~~e~~~~~~~y~~if~~LgL~~~ 193 (568)
T TIGR00409 127 QL-PLNLYQIQTKFRDEIRP-----RFGLMRGREFIMKDAYSFHSDE-ES-----LDATYQKMYQAYSNIFSRLGLDFR 193 (568)
T ss_pred cc-CeEEEEeeCEeeCCCCC-----CCCccccccEEEEEEEEEeCCh-HH-----HHHHHHHHHHHHHHHHHHhCCcce
Confidence 44 59999999999865221 011 24677777766665311 00 112355667778999999997653
No 80
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=89.12 E-value=1 Score=54.60 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC-C-CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN-I-NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~-~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
...+.+.+++.+...||+|+.|-.|.+.+....-+.. . .++.. . .....+.-+||++--|++....+..... +.-
T Consensus 277 ~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy-~-~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 277 RNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMY-F-SEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcC-e-ecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 4457888899999999999999999999876542210 0 01222 1 1334455579999999999999655542 233
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~ 644 (809)
++|+|++|.+|+.+.... ... -.+|..+..+-+-+... .....+.++-...+.+++.+|+.
T Consensus 355 P~r~~~~g~~fR~E~~~~----~~Gl~R~reF~q~d~~~f~~~~-------~~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 355 PIRMCEFGQVHRHEFSGA----LNGLLRVRTFCQDDAHLFVTPD-------QIEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred CceeEEeccccCCCCCcC----CcCcceeeeeEEccEEEECCHH-------HHHHHHHHHHHHHHHHHHHcCCc
Confidence 699999999998653210 001 13455555444433210 01223556777777777777764
No 81
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=88.80 E-value=1 Score=53.88 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
.+.+.+.+++.+...||+|+.|-.|.+.+....-+. ...++...+... ..+.-+||+.-.|++....+.+.+. ..-
T Consensus 209 ~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~~~l 287 (575)
T PRK12305 209 RREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSYRDL 287 (575)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccccc-CCceEEEecCCCHHHHHHHhcccCChhhC
Confidence 456788888889999999999999999987654211 001233444322 4566799999999988888776542 123
Q ss_pred CeeEEEEeeEEecCCCCCCCCCc-cCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFT-VSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~-~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++|+|++|.||+..... ... ..-.+|..+.++-+-|... + ..-.+.++...+..++..+|+
T Consensus 288 P~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~if~~~~--~-----~~~e~~e~i~l~~~~~~~lgl 349 (575)
T PRK12305 288 PLRLAEFGTVYRYEKSG---VLHGLTRVRGFTQDDAHIFCTPD--Q-----IEDEILKVLDFVLELLKDFGF 349 (575)
T ss_pred CHhhEEecccccCCCCC---CCcCcccccCeEEcceEEEeCHH--H-----HHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999865321 000 0123566666665555210 0 011235566666666666665
No 82
>PRK09350 poxB regulator PoxA; Provisional
Probab=88.37 E-value=1.2 Score=48.95 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee-C-CC--CccccccchhhHHHHHHHHHHHhcCCCC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL-N-PI--SKKFNTMRSTLIGSLVNNICYNLKRKLE 572 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~-N-Pi--s~e~s~lR~SLlpgLL~~l~~N~~~~~~ 572 (809)
..+.+.+|+.|...||.||.|-.|..-.. .... ..++.+. . |- .....+||+|-=..+=..++. +.
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~~~~---~~~~--~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~----~~- 78 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQATV---TDIH--LVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAA----GS- 78 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecccC---CCcc--CCceeeeeccccccCCcceEEecCHHHHHHHHhhc----cc-
Confidence 34688999999999999999998864221 1111 1112211 1 10 123447886633222223332 22
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
-|+|++|+||+..+.. ..+..|.+++-.=.. ..|+.|+-..+|.++..+
T Consensus 79 -~rvf~i~~~FR~e~~~------~~H~~EFt~lE~y~~-------------~~d~~dlm~~~E~li~~i 127 (306)
T PRK09350 79 -GPIFQICKSFRNEEAG------RYHNPEFTMLEWYRP-------------HYDMYRLMNEVDDLLQQV 127 (306)
T ss_pred -cceEEecceeecCCCC------CCCCcHHHhhhhhhh-------------CCCHHHHHHHHHHHHHHH
Confidence 3999999999865431 234456555543222 248999999999988754
No 83
>PLN02908 threonyl-tRNA synthetase
Probab=88.24 E-value=1.6 Score=53.34 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC--CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN--INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~--~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
...+.+.+|+.+...||+||.|-.+.+.+....-+.. -.++...+ -+..+.-.||++.-|++....+...+. +.-
T Consensus 324 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~L 401 (686)
T PLN02908 324 YNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVRSYREL 401 (686)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhccccChhhC
Confidence 4567888899999999999999999999876642211 01223333 234567789999999998877655431 123
Q ss_pred CeeEEEEeeEEecCC
Q psy9573 573 RIRLFEIANVYLHDK 587 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~ 587 (809)
++++|++|.+|+.+.
T Consensus 402 Plr~~~~g~~fR~E~ 416 (686)
T PLN02908 402 PLRLADFGVLHRNEL 416 (686)
T ss_pred CHhHEEeeccccCCC
Confidence 599999999998654
No 84
>PRK06462 asparagine synthetase A; Reviewed
Probab=87.07 E-value=3 Score=46.53 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.++.... ....... ...+.+ ..........|++|---- ++.+..- . =++
T Consensus 35 ~i~~~iR~ff~~~~f~EV~TP~l~~~~~-~~~~~g~-~~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g----~--~rV 105 (335)
T PRK06462 35 SILRYTREFLDGRGFVEVLPPIISPSTD-PLMGLGS-DLPVKQISIDFYGVEYYLADSMILH-KQLALRM----L--GKI 105 (335)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEecCCC-CCCCccc-cCCccccccccCCCceeeccCHHHH-HHHHHhh----c--CcE
Confidence 4678899999999999999998886421 0010100 000110 001123445788875333 5555532 2 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||++|+.++.+.+ +..+..|.++|-+=+.+ .|+.|+-..+|.++..+
T Consensus 106 feI~p~FR~E~~~~~---~~rHl~EFtmlE~e~~~-------------~d~~dlm~~~e~lv~~i 154 (335)
T PRK06462 106 FYLSPNFRLEPVDKD---TGRHLYEFTQLDIEIEG-------------ADLDEVMDLIEDLIKYL 154 (335)
T ss_pred EEEeccccCCCCCCC---CCCCCCchheeeehhhc-------------CCHHHHHHHHHHHHHHH
Confidence 999999987654300 01355677777553333 47889999988888653
No 85
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=86.75 E-value=3 Score=49.87 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcE-EeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPI-ELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i-~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.+++..- +.. ..++ .=.|.+..++ +||.|-=--| +.+ +--+. =|+
T Consensus 258 ~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G----GA~--a~PF~T~~n~~d~~l-YLriSpEL~l-KrL---lvgG~--~rV 324 (585)
T PTZ00417 258 KIINYLRNFLNDRGFIEVETPTMNLVAG----GAN--ARPFITHHNDLDLDL-YLRIATELPL-KML---IVGGI--DKV 324 (585)
T ss_pred HHHHHHHHHHHHCCeEEEeCCeeeccCC----ccc--ceeEEecccCCCcce-EEeecHHHHH-HHH---HHhCC--CCE
Confidence 4678899999999999999999986521 111 1112 1124443333 7887643332 222 11233 479
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||++|+.++.+ ..+-.|.++|-+=.++ .|+.|+-..+|.++..+
T Consensus 325 feIgp~FRnE~~~------~rHnpEFTmlE~y~ay-------------~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 325 YEIGKVFRNEGID------NTHNPEFTSCEFYWAY-------------ADFYDLIKWSEDFFSQL 370 (585)
T ss_pred EEEcccccCCCCC------CCccceeeeeeeeeec-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876543 2456677777655443 48999998888887653
No 86
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=86.66 E-value=2.1 Score=46.83 Aligned_cols=138 Identities=9% Similarity=0.010 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHh-cCCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNL-KRKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~-~~~~~ 572 (809)
.+++.+-+++.+...||+|+.+-.|+..+..+.-+ +...++..++.+ +.-+||++--+.+....+... ..+.-
T Consensus 55 ~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~~L 130 (297)
T cd00770 55 ERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEG----EDLYLIATAEVPLAALHRDEILEEEEL 130 (297)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecC----CCEEEeecCCHHHHHHHhcccCCHhhC
Confidence 44567778888999999999999999998865432 111134456644 456899999998877665432 22223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeEe-eeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVI-AYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~~-~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
++++|++|++|+...... +..+... .+|..+.-+. ++-. .....-|.++....+.+++.||+.+.
T Consensus 131 Plr~~~~~~~fR~E~~~~-g~~~~GL~R~reF~~~e~~~f~~~--------e~~~~~~~~~l~~~~~i~~~lgl~~~ 198 (297)
T cd00770 131 PLKYAGYSPCFRKEAGSA-GRDTRGLFRVHQFEKVEQFVFTKP--------EESWEELEELISNAEEILQELGLPYR 198 (297)
T ss_pred CchheecChhHhCccccC-CCCCCCceEEEeeeeeeEEEEECc--------hHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 699999999998543210 0000001 2344443332 2211 01123488899999999999998653
No 87
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=86.65 E-value=5.4 Score=44.37 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHH-HHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLV-NNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL-~~l~~N~~~~~~~i~l 576 (809)
.+.+.+|+.|...||.||-|-.+++... ... ...+.+...-......|++|- .|. +.+. ..+. -++
T Consensus 13 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~----~~~--~~~f~~~~~~~~~~~yL~~Sp--ql~~k~ll---~~g~--~~v 79 (329)
T cd00775 13 KIISYIRKFLDDRGFLEVETPMLQPIAG----GAA--ARPFITHHNALDMDLYLRIAP--ELYLKRLI---VGGF--ERV 79 (329)
T ss_pred HHHHHHHHHHHHCCCEEEECCccccCCC----Ccc--ceeEEeccCCCCcceeeccCH--HHHHHHHH---hcCC--CcE
Confidence 4678999999999999999988875421 010 112222111224455677764 332 3321 1222 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||.||+.++.+ ..+..|.++|-+=+++ .|+.++...+|.++..+
T Consensus 80 f~i~~~FR~E~~~------~rHl~EFt~le~e~~~-------------~~~~~~m~~~e~li~~i 125 (329)
T cd00775 80 YEIGRNFRNEGID------LTHNPEFTMIEFYEAY-------------ADYNDMMDLTEDLFSGL 125 (329)
T ss_pred EEEeccccCCCCC------CCCCCceEEEEEeeec-------------CCHHHHHHHHHHHHHHH
Confidence 9999999866532 2466788888765554 37889999999888753
No 88
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=85.59 E-value=6 Score=46.50 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHH-HHHHHHhcCCCCCee
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLV-NNICYNLKRKLERIR 575 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL-~~l~~N~~~~~~~i~ 575 (809)
+..+.+|++|...||.||-|-.+++... +.. ...+.. .|-.. ...+||.|- .|. +.+. .-+. =|
T Consensus 177 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~----Ga~--a~pF~t~~~~~~-~~~yL~~Sp--ql~lk~l~---v~g~--~r 242 (491)
T PRK00484 177 KIISAIRRFLDNRGFLEVETPMLQPIAG----GAA--ARPFITHHNALD-IDLYLRIAP--ELYLKRLI---VGGF--ER 242 (491)
T ss_pred HHHHHHHHHHHHCCCEEEECCceeccCC----Ccc--ceeeeeccccCC-CceEeccCH--HHHHHHHH---hccC--Cc
Confidence 4678899999999999999999874321 110 112222 13222 334577764 432 2221 1122 57
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||||++|+.++.+ ..+-.|.++|-+=++. .|+.|+-..+|.++..+
T Consensus 243 Vfei~~~FR~E~~~------~rH~pEFt~lE~e~a~-------------~d~~d~m~~~E~li~~i 289 (491)
T PRK00484 243 VYEIGRNFRNEGID------TRHNPEFTMLEFYQAY-------------ADYNDMMDLTEELIRHL 289 (491)
T ss_pred EEEEecceecCCCC------CCcCCceEEEEEEEec-------------CCHHHHHHHHHHHHHHH
Confidence 89999999976543 2466788888765554 48999999999988764
No 89
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=85.23 E-value=6.3 Score=42.79 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCC-CccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPI-SKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPi-s~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|+.|...||.||-|-.++....... ....+.-+. ..+.-.||+|----+=..++ -+. =|+
T Consensus 6 ~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~-------~~f~~~~~~~~~~~~~L~~Spql~lk~ll~----~g~--~~v 72 (280)
T cd00777 6 RVIKAIRNFLDEQGFVEIETPILTKSTPEGA-------RDFLVPSRLHPGKFYALPQSPQLFKQLLMV----SGF--DRY 72 (280)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecCCCCCC-------CCceeccccCCCceeecccCHHHHHHHHHh----cCc--CcE
Confidence 4678999999999999999998874322111 111221111 12222377764332211222 122 579
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
|++|+||+.+... .....|.+++.+=+++ .|+.++...+|.++..
T Consensus 73 ~~i~~~fR~e~~~------~~r~~Ef~~~e~e~~~-------------~~~~dlm~~~e~li~~ 117 (280)
T cd00777 73 FQIARCFRDEDLR------ADRQPEFTQIDIEMSF-------------VDQEDIMSLIEGLLKY 117 (280)
T ss_pred EEeccceeCCCCC------CCccceeEEeEeeecc-------------CCHHHHHHHHHHHHHH
Confidence 9999999876542 1123477787766554 3899999999988864
No 90
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=84.50 E-value=5.5 Score=48.07 Aligned_cols=112 Identities=19% Similarity=0.108 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee-CCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL-NPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~-NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.+++... ... ...+... |-. ....+||+|-=--|=..+. -+. =++
T Consensus 238 ~I~~aiR~ff~~~gFlEVeTPiL~~~~~----ga~--a~pF~t~~n~~-~~~~yL~~SPELylKrLiv----gG~--erV 304 (659)
T PTZ00385 238 VMLQALRDYFNERNFVEVETPVLHTVAS----GAN--AKSFVTHHNAN-AMDLFLRVAPELHLKQCIV----GGM--ERI 304 (659)
T ss_pred HHHHHHHHHHHHCCCEEeeCCEeeccCC----CCC--ccceEeecccC-CCCEEecCChHHHHHHHhh----ccc--CCE
Confidence 4678899999999999999999865321 000 1222221 222 2234577763322222222 222 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||++|+.++.+ ..+-.|.+++-+=.++ .|+.++-..+|.++..+
T Consensus 305 yeIg~~FRnE~~~------~rH~pEFTmlE~y~a~-------------~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 305 YEIGKVFRNEDAD------RSHNPEFTSCEFYAAY-------------HTYEDLMPMTEDIFRQL 350 (659)
T ss_pred EEEeceecCCCCC------CCccccccceeeeeec-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876542 2355677666544332 48999999999888754
No 91
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=84.19 E-value=4 Score=47.96 Aligned_cols=111 Identities=20% Similarity=0.141 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHHH-HHHHHhcCCCCCee
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLVN-NICYNLKRKLERIR 575 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL~-~l~~N~~~~~~~i~ 575 (809)
+..+.+|++|...||.||-|-.+++..- +.. ..++.. .|-. ....+||.| |.|.. .+. --+. =|
T Consensus 177 ~i~~~iR~fl~~~gF~EVeTP~L~~~~g----ga~--a~pF~t~~~~~-~~~~yLriS--pELylKrli---vgG~--~r 242 (496)
T TIGR00499 177 KIIKAIRRFLDDRGFIEVETPMLQVIPG----GAN--ARPFITHHNAL-DMDLYLRIA--PELYLKRLI---VGGF--EK 242 (496)
T ss_pred HHHHHHHHHHHHCcCEEEeCCeeecCCC----Ccc--ceeEEeecccC-CCceEEecC--HHHHHHHHH---hCCC--Cc
Confidence 4678899999999999999998876421 110 122222 2333 234569988 55542 221 1222 57
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||||++|+..+.+ ..+-.|.++|-+=++. .|+.|+-..+|.++..+
T Consensus 243 VfeIg~~FRnE~~~------~rH~pEFTmlE~y~a~-------------~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 243 VYEIGRNFRNEGVD------TTHNPEFTMIEFYQAY-------------ADYEDLMDLTENLFKFL 289 (496)
T ss_pred eEEEecceecCCCC------Ccccchhheeehhhhc-------------CCHHHHHHHHHHHHHHH
Confidence 89999999976543 2455677776543222 48999999999888754
No 92
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=83.65 E-value=4.8 Score=47.43 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHH-HHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSL-VNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgL-L~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.+.+..- +.. ....+.-.|-... ..+||.|- .| |+.+. --+. =|+
T Consensus 189 ~i~~~iR~f~~~~gFiEVeTPiL~~~~g----Ga~-a~pF~t~~~~~~~-~~yL~~Sp--ELylKrli---vgG~--~rV 255 (505)
T PRK12445 189 KILAAIRQFMVARGFMEVETPMMQVIPG----GAS-ARPFITHHNALDL-DMYLRIAP--ELYLKRLV---VGGF--ERV 255 (505)
T ss_pred HHHHHHHHHHHHCCCEEeeCCeeEecCC----CCc-ccceecccccCCc-ceeeecCH--HHHHHHHH---hccC--CcE
Confidence 4678899999999999999998865311 100 0011111233322 34688875 33 22221 1222 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||++|+..+.+ ..+-.|.++|-+=++. .|+.++-..+|.++..+
T Consensus 256 feIg~~FRnE~~~------~rH~pEFTmlE~y~a~-------------~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 256 FEINRNFRNEGIS------VRHNPEFTMMELYMAY-------------ADYHDLIELTESLFRTL 301 (505)
T ss_pred EEEehhccCCCCC------CCcCcccceeeeeeec-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876532 3456787777655443 48999999999998765
No 93
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=83.63 E-value=4.7 Score=46.71 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC--CCCCcEEeeCCCCccccccchhh---HHHHHHHHHHHhcC
Q psy9573 495 EGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN--INNYPIELLNPISKKFNTMRSTL---IGSLVNNICYNLKR 569 (809)
Q Consensus 495 ~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~--~~~~~i~L~NPis~e~s~lR~SL---lpgLL~~l~~N~~~ 569 (809)
..+++.+.+++.+...||+|+.+-.+.+.+..+.-+.. -.++..++.... .+.-+||++- ...+.+....+. +
T Consensus 49 i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~-~~~~~L~Pt~e~~~~~~~~~~~~sy-r 126 (439)
T PRK12325 49 VLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRH-DREMLYGPTNEEMITDIFRSYVKSY-K 126 (439)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCC-CCEEEEcCCCcHHHHHHHHHHhhhc-h
Confidence 35567888999999999999999999988765432110 013445665443 4456799844 444444444432 3
Q ss_pred CCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 570 KLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 570 ~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
.. ++++|++|.+|+....+..| -...+|..+--+-..+.. .......+.++......+++.||+.+
T Consensus 127 dL-Plrl~q~~~~fR~E~~~~~G---L~R~reF~~~D~h~f~~~------~~~a~~~~~~~~~~~~~i~~~lgl~~ 192 (439)
T PRK12325 127 DL-PLNLYHIQWKFRDEIRPRFG---VMRGREFLMKDAYSFDLD------EEGARHSYNRMFVAYLRTFARLGLKA 192 (439)
T ss_pred hh-chHheEecCEecCCCCCCCC---ccccceEeEeccEEEeCC------HHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 34 59999999999854221000 001223322100001000 00011236778888888999999753
No 94
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=83.62 E-value=8.1 Score=41.82 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
....++++++.+...||.|+.|-.|-.-+..............+...+.+-+.-+||+-+.|++.+.++.+. . ...|
T Consensus 10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--~-~~~R 86 (272)
T PRK12294 10 LKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--T-AATK 86 (272)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--C-CCce
Confidence 345788899999999999999998866554311111101223444555678888999999999999887653 2 2369
Q ss_pred EEEEeeEEec
Q psy9573 576 LFEIANVYLH 585 (809)
Q Consensus 576 lFEiG~Vf~~ 585 (809)
+|-+|+||+.
T Consensus 87 l~Y~g~VfR~ 96 (272)
T PRK12294 87 VAYAGLIIRN 96 (272)
T ss_pred EEEeccEecc
Confidence 9999999974
No 95
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=83.54 E-value=1.4 Score=50.71 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
+..+.+|++|-..||-||-|-.+..-- +.......+.--|-+..|+ +||=+. -| .|++=+--+. -|+|
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA~ArPF~ThhNald~dl-yLRIAp--EL--yLKRliVGG~--erVf 252 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPMLQPIP-----GGAAARPFITHHNALDMDL-YLRIAP--EL--YLKRLIVGGF--ERVF 252 (502)
T ss_pred HHHHHHHHHHHHCCCeEeccccccccC-----CCcccccceeeecccCCce-EEeecc--HH--HHHHHHhcCc--hhhe
Confidence 467889999999999999997776532 1111134567778777776 466432 22 1222222232 3899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||++|+..+-+ .++-.|.+++-+=.+ -+||.|+....|.+++.+
T Consensus 253 EIgr~FRNEGid------~tHNPEFTmlE~Y~A-------------YaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 253 EIGRNFRNEGID------TTHNPEFTMLEFYQA-------------YADYEDLMDLTEELIKEL 297 (502)
T ss_pred eeccccccCCCc------cccCcchhhHHHHHH-------------HhHHHHHHHHHHHHHHHH
Confidence 999999977653 334456555533211 358899998888888765
No 96
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=83.48 E-value=1.2 Score=37.64 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=31.3
Q ss_pred CccCHHHHhhccCCCCCHHHHHHHHHhcCceeee
Q psy9573 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEK 34 (809)
Q Consensus 1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~ 34 (809)
|.++.+++++++..+++.+++.+.|+++|++++.
T Consensus 4 i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~ 37 (71)
T smart00874 4 ITLRRERINRLLGLDLSAEEIEEILKRLGFEVEV 37 (71)
T ss_pred EEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEe
Confidence 4688999999999999999999999999999964
No 97
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=83.33 E-value=1.4 Score=52.93 Aligned_cols=70 Identities=21% Similarity=0.366 Sum_probs=62.0
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEE-e------------------------CCEEEEeCCCccCCCCcc
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQ-K------------------------NNIFLVIPPAHRFDLEIE 463 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~-~------------------------~~~~~v~vP~~R~DI~~~ 463 (809)
++|.++.+.+.+++|.+++.+++.+.|-.+|++++. . +..+.+.+|+.|.|...-
T Consensus 2 P~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls~ 81 (597)
T PLN02265 2 PTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLCL 81 (597)
T ss_pred CEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhhH
Confidence 479999999999999999999999999999999963 1 226899999999999999
Q ss_pred hhhhhhhhhhhccCC
Q psy9573 464 EDIIEEIIRIYGFEN 478 (809)
Q Consensus 464 ~DliEEIaR~yGydn 478 (809)
.=|+-|++-++|-.-
T Consensus 82 ~GiARel~a~~g~~~ 96 (597)
T PLN02265 82 EGLARALRVFLGTEP 96 (597)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998444
No 98
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=82.67 E-value=8.8 Score=44.60 Aligned_cols=113 Identities=9% Similarity=-0.079 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeC---C----CCccccccchhhHHHHHHHHHHHhcCC
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLN---P----ISKKFNTMRSTLIGSLVNNICYNLKRK 570 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~N---P----is~e~s~lR~SLlpgLL~~l~~N~~~~ 570 (809)
...+.+|++|...||.||-|-.+++..- .+. .+.+.+.. | .-.....|++|----+ +.+.. +
T Consensus 138 ~i~~~iR~f~~~~gf~EV~TP~L~~~~~----eg~--~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~----g 206 (450)
T PRK03932 138 TLAQAIHEFFNENGFVWVDTPIITASDC----EGA--GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAM----A 206 (450)
T ss_pred HHHHHHHHHHHHCCCEEecCCceeccCC----CCC--CCceEeecccccccccccCCCcccccCHHHHH-HHHHh----c
Confidence 4678899999999999999999886421 011 22344421 1 1123347888765443 44432 3
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
. =|+||||++|+..+.. +..+..|.++|-+=+++ .|+.++-..+|.++..+
T Consensus 207 ~--~rVf~i~~~FR~E~~~-----t~rHl~EFt~lE~e~~~-------------~~~~~~m~~~e~li~~~ 257 (450)
T PRK03932 207 L--GKVYTFGPTFRAENSN-----TRRHLAEFWMIEPEMAF-------------ADLEDNMDLAEEMLKYV 257 (450)
T ss_pred c--CCeEEeeeccccCCCC-----CccccccccccceEEec-------------cCHHHHHHHHHHHHHHH
Confidence 3 5789999999875431 12355677777665554 37889998888888754
No 99
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=81.75 E-value=4.1 Score=48.44 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=62.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC-CC-CCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN-IN-NYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~-~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
.+.+.+.+|+.+...||+||.|-.+.+.+....-+.. .. ++...+ -...+.-.||++.-|++....+.+.+. +.-
T Consensus 171 ~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdL 248 (545)
T PRK14799 171 RNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKPRTYRDL 248 (545)
T ss_pred HHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhccccChhhC
Confidence 4557778888889999999999998877765542111 00 111112 123466789999999999888876542 123
Q ss_pred CeeEEEEeeEEecCC
Q psy9573 573 RIRLFEIANVYLHDK 587 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~ 587 (809)
++|+||+|.||+.+.
T Consensus 249 PlR~~e~g~vfR~E~ 263 (545)
T PRK14799 249 PIRFSEFGHVYRWEK 263 (545)
T ss_pred CHhhEEecceecCCC
Confidence 699999999998654
No 100
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=81.40 E-value=8.9 Score=42.51 Aligned_cols=112 Identities=16% Similarity=0.064 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
.+.+.+|+.+...||.||-|-.++.... ... .+.+++ | ....-..||+|---- ++.+..- --++|
T Consensus 29 ~i~~~ir~~f~~~gf~eV~TP~l~~~~~----e~~--~~~f~~-~-~~~~~~yL~~Spql~-lk~l~~~------~~~vf 93 (322)
T cd00776 29 EVLRAFREFLRENGFTEVHTPKITSTDT----EGG--AELFKV-S-YFGKPAYLAQSPQLY-KEMLIAA------LERVY 93 (322)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceecCCC----Ccc--CCcccc-c-cCCCcceecCCHHHH-HHHHHHh------hhhhE
Confidence 4678899999999999999998886321 011 112222 1 122344677775553 3333321 14689
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||+||+..+.. +..+..|.++|-+=+.+. -|+.++-..+|.++..+
T Consensus 94 ~i~~~FR~E~~~-----~~rHl~EFtmlE~e~~~~------------~~~~dlm~~~e~ll~~~ 140 (322)
T cd00776 94 EIGPVFRAEKSN-----TRRHLSEFWMLEAEMAFI------------EDYNEVMDLIEELIKYI 140 (322)
T ss_pred EeccccccCCCC-----cCCCcceeeccceeeecc------------CCHHHHHHHHHHHHHHH
Confidence 999999876532 123557888876655541 27889998888888654
No 101
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=81.15 E-value=4.6 Score=43.29 Aligned_cols=141 Identities=8% Similarity=-0.020 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-h--cCCCCCCcEEeeCCCC---ccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-F--SQNINNYPIELLNPIS---KKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~--~~~~~~~~i~L~NPis---~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
..++.+.+++.+...||+|+.+-.+.+.+.... - .+.-.++..++.+--. ++.-+||++--|.+....+....
T Consensus 35 ~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s 114 (261)
T cd00778 35 WENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRS 114 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccc
Confidence 455677789999999999999999999876432 1 1110134556654221 24568999966666655555433
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeE--eeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc-CCee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAV--IAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI-KLNF 645 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~--~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l-gi~~ 645 (809)
++.-+++++++|.+|+.+..+.-| -...+|..+.-+ +.+. ......-+.++....+.++..+ |+.+
T Consensus 115 ~r~LPlr~~~~~~~fR~E~~~~~G---l~R~reF~~~d~h~~~~~--------~e~~~~~~~~~~~~~~~i~~~llgl~~ 183 (261)
T cd00778 115 YRDLPLKINQWVNVFRWETKTTRP---FLRTREFLWQEGHTAHAT--------EEEAEEEVLQILDLYKEFYEDLLAIPV 183 (261)
T ss_pred hhhcCHHHHhhhhhccCCCCCCCc---eeEeeeeeeeceeeccCC--------HHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 222369999999999865421000 001123322221 1111 0011224777888899999998 9866
Q ss_pred ee
Q psy9573 646 LK 647 (809)
Q Consensus 646 ~~ 647 (809)
..
T Consensus 184 ~~ 185 (261)
T cd00778 184 VK 185 (261)
T ss_pred EE
Confidence 43
No 102
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=80.30 E-value=5 Score=42.86 Aligned_cols=128 Identities=7% Similarity=0.012 Sum_probs=79.3
Q ss_pred chHHHHHHHHHHHhCC--ceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc--CC
Q psy9573 496 GYQSLFSIRHQLAFAD--YQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK--RK 570 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~G--f~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~--~~ 570 (809)
.+++.+.+|+.+...| |+|+.|-.+.+.+..... ++. .+ ..+.-+||+.+.|+.+-.+++... ++
T Consensus 35 ~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~--d~--------~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 35 KNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV--ES--------GGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc--CC--------CCcccccCCcccchHHHHHHHHHHHhCC
Confidence 4567788888888885 999999999998553321 111 00 123568999999877765554432 22
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.-+++++++|++|+.+.....+ -.-.+|..+..+-+-+... ...-.|..++.....++..+|+
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~g---l~R~ReF~q~d~~~f~~~~-------~~~e~~~~v~~~~~~~l~~~G~ 167 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNG---LFRVREFTQAEIEFFVDPE-------KSHPWFDYWADQRLKWLPKFAQ 167 (254)
T ss_pred CCCchhhhhchhhccccCcccc---eeeeccchhhheeeeECCC-------CchHHHHHHHHHHHHHHHHcCC
Confidence 3359999999999865322000 0123455554444433211 1122377788888889988886
No 103
>PLN02502 lysyl-tRNA synthetase
Probab=80.07 E-value=8.5 Score=45.80 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.+++..- +.. ..++.. .|-+ ....+||.|-=--|=..+.- +. =++
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~g----GA~--a~pF~t~~n~~-~~~~yL~~Spel~lK~L~v~----g~--~rV 300 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIAG----GAA--ARPFVTHHNDL-NMDLYLRIATELHLKRLVVG----GF--ERV 300 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccCC----Ccc--ccceeeecccC-CcceeeecCHHHHHHHHHHh----cc--CCE
Confidence 4578899999999999999998875321 111 112222 1333 23457887743322122222 22 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||++|+..+.+ ..+-.|.++|-+=++. .|+.|+-..+|.++..+
T Consensus 301 feIg~~FRnE~~~------~rH~pEFtmlE~y~a~-------------~d~~dlm~~~E~li~~i 346 (553)
T PLN02502 301 YEIGRQFRNEGIS------TRHNPEFTTCEFYQAY-------------ADYNDMMELTEEMVSGM 346 (553)
T ss_pred EEEcCeeeCCCCC------Cccccceeehhhhhhc-------------CCHHHHHHHHHHHHHHH
Confidence 9999999976543 2355666666442222 48999999999888754
No 104
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=76.82 E-value=5.3 Score=43.94 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee--CC-CCccccccchhhHHHHHHHHHHHhcCCCCC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL--NP-ISKKFNTMRSTLIGSLVNNICYNLKRKLER 573 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~--NP-is~e~s~lR~SLlpgLL~~l~~N~~~~~~~ 573 (809)
..+.+.+|+.+...||.||-|-.|+...-.+. . .+.+++. +| -......||+|-=-.+=..++. +.
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~---~--~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~----g~-- 73 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAPVTDP---H--LDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAA----GS-- 73 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCCCCCc---C--CcceeeeccCCCCCCcceeeecCHHHHHHHHHhc----cC--
Confidence 34688999999999999999999986521000 0 1122221 11 1223467887743322223332 22
Q ss_pred eeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 574 IRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 574 i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
-|+||||+||+.++.+ ..+..|.++|-+=.+ -.|+.|+-..+|.++..+
T Consensus 74 ~rVfeigp~FRaE~~~------~rHl~EFtmLE~e~~-------------~~d~~d~m~~~e~li~~i 122 (304)
T TIGR00462 74 GPIFQICKVFRNGERG------RRHNPEFTMLEWYRP-------------GFDYHDLMDEVEALLQEL 122 (304)
T ss_pred CCEEEEcCceeCCCCC------CCcccHHHhHHHHHH-------------cCCHHHHHHHHHHHHHHH
Confidence 5789999999876532 234556665543222 248999999999888653
No 105
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=73.05 E-value=20 Score=41.35 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
...+.+|++|...||.||-|-.+++... + .. .+.+.+. .......||+|----+=..++. +. =++|
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~-e---g~--~~~f~v~--~~~~~~yL~~Spql~~q~li~~----g~--~rVf 203 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVASAT-E---GG--TELFPIT--YFEREAFLGQSPQLYKQQLMAA----GF--ERVY 203 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecCCC-C---CC--cceeeeE--ecCCcEEECcCHHHHHHHHHhc----cc--CcEE
Confidence 4678899999999999999988875431 0 00 1222221 1123445777643322112221 22 5789
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||++|+..+.+ +..+..|.++|-+=+++ .|+.++-..+|.++..+
T Consensus 204 ~i~~~FR~E~~~-----t~rHl~EFt~lE~e~a~-------------~~~~dlm~~~e~li~~i 249 (428)
T TIGR00458 204 EIGPIFRAEEHN-----THRHLNEATSIDIEMAF-------------EDHHDVMDILEELVVRV 249 (428)
T ss_pred EEecccccCCCC-----CccchheeeEeeeeecc-------------CCHHHHHHHHHHHHHHH
Confidence 999999876542 11255688888665554 36778888888777643
No 106
>PLN02850 aspartate-tRNA ligase
Probab=72.99 E-value=13 Score=44.14 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
...+.+|++|...||.||-|-.+++... + +. ...+.+.- .....+|++|- .|..-+.- .-+. =++|
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~-e---gg--a~~F~v~y--f~~~~~L~qSp--ql~kq~li--~~g~--~rVf 295 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGAS-E---GG--SAVFRLDY--KGQPACLAQSP--QLHKQMAI--CGDF--RRVF 295 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCC-c---cc--cceeeecc--CCcceecCCCH--HHHHHHHH--HhcC--CceE
Confidence 4678899999999999999988866431 0 00 12334421 23445677764 33332211 1122 4789
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||.||+.++.. +..+..|.++|-+=++ -..++.++-..+|.++..+
T Consensus 296 eIgp~FRaE~s~-----t~RHl~EFt~Le~Em~------------~~~~y~evm~~~E~ll~~i 342 (530)
T PLN02850 296 EIGPVFRAEDSF-----THRHLCEFTGLDLEME------------IKEHYSEVLDVVDELFVAI 342 (530)
T ss_pred EEecccccCCCC-----CCccchhhccchhhhh------------hhcCHHHHHHHHHHHHHHH
Confidence 999999875531 1123456555532111 1236778888888877653
No 107
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.66 E-value=18 Score=41.83 Aligned_cols=181 Identities=12% Similarity=0.074 Sum_probs=97.9
Q ss_pred eCCCccCCCCcchhhhhhhhhhhccCCCC-CCCCCccc-cCCCCCcchHHHHHHHHHHH-hCCceEeeeccccChHHHhh
Q psy9573 452 IPPAHRFDLEIEEDIIEEIIRIYGFENIP-ISLPITVS-KISPIKEGYQSLFSIRHQLA-FADYQEVINYSFIEDSLEKD 528 (809)
Q Consensus 452 ~vP~~R~DI~~~~DliEEIaR~yGydnip-~~~p~~~~-~~~~~~~~~~~~~~lr~~L~-~~Gf~Evitysf~s~~~~~~ 528 (809)
.+|.|.++...-.+|.++. -++-|+.-- ..-+.... .+....-.+.+.+-+++.+. ..||+|+.+-.|++.+....
T Consensus 128 ~~~~~~f~~~dH~ei~~~l-~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~ 206 (425)
T PRK05431 128 EPREFDFEPKDHWELGEKL-GILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYG 206 (425)
T ss_pred CCCCCCCCCCCHHHHHhhc-CceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhh
Confidence 3466666666666676663 233333210 11111111 11111223345555666777 89999999999999987654
Q ss_pred hc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCCCeeEEEEeeEEecCCCCCCCCCccC--Ccccee
Q psy9573 529 FS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELK 603 (809)
Q Consensus 529 ~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~ 603 (809)
-+ +...++..+|.+ +.-+||++-=+.+....+.... ...-+++++++|.+|+..... .|..+.. -.+|..
T Consensus 207 ~G~~~~f~~~ly~i~~----~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~-~g~~~~GL~Rv~qF~ 281 (425)
T PRK05431 207 TGQLPKFEEDLYKIED----DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGS-AGRDTRGLIRVHQFD 281 (425)
T ss_pred cCccccchhhceEecC----CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCc-CCCCCCceeeeeeee
Confidence 32 111134456643 3457888776666544443321 111269999999999865321 0001111 124444
Q ss_pred EEeEe-eeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 604 KIAVI-AYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 604 ~l~~~-~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+.-+. ++-. . ....-|.++....+.++..||+.|+
T Consensus 282 k~E~~~f~~~--e------~s~~~~~~~l~~~~~i~~~Lglpyr 317 (425)
T PRK05431 282 KVELVKFTKP--E------DSYAELEELTANAEEILQKLELPYR 317 (425)
T ss_pred eeeEEEEECH--H------HHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 44332 2221 1 1123488899999999999998654
No 108
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=71.64 E-value=25 Score=42.14 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
+..+.+|++|...||.||-|-.++....-. . .+.+.-.+-...++-.||+| |.|..-+.- .-+. =|+|
T Consensus 143 ~i~~~iR~ff~~~gFiEVeTP~L~~s~~eG---a---r~f~vp~~~~~~~~y~L~qS--pQlykq~l~--v~G~--ervf 210 (583)
T TIGR00459 143 KVTKAVRNFLDQQGFLEIETPMLTKSTPEG---A---RDYLVPSRVHKGEFYALPQS--PQLFKQLLM--VSGV--DRYY 210 (583)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeccCCCCC---C---cceeeeeecCCCceeecCCC--HHHHHHHHH--hccc--CcEE
Confidence 467889999999999999999998532100 0 11110001011222236655 444433211 1233 4789
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||+||+.++.. ...-.|.++|-+=++. +|+.|+-..+|.++..+
T Consensus 211 qI~~~FR~E~~~------t~r~pEFT~le~E~af-------------~d~~dvm~~~E~li~~v 255 (583)
T TIGR00459 211 QIARCFRDEDLR------ADRQPEFTQIDMEMSF-------------MTQEDVMELIEKLVSHV 255 (583)
T ss_pred EEcceeeCCCCC------CCCCcccCcceeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 999999876542 1123677777665554 47889998888887643
No 109
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=70.77 E-value=23 Score=41.01 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
...+.+|++|...||.||-|-.+++... ... .+.+.+.. ......||+|---- ++.+.. -+. =++|
T Consensus 141 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~--~~~f~~~~--~~~~~~L~~Spql~-~q~l~~---~g~--~rVf 206 (437)
T PRK05159 141 EVLRAFREFLYENGFTEIFTPKIVASGT----EGG--AELFPIDY--FEKEAYLAQSPQLY-KQMMVG---AGF--ERVF 206 (437)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccCC----CCC--cceEeEEe--cCCceEecCCHHHH-HHHHHh---cCC--CcEE
Confidence 4678899999999999999988875321 001 12233321 12334677775443 333321 222 5789
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCC-HHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNID-YFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~d-f~dlKg~le~ll~~l 641 (809)
|||++|+.++.+ +..+..|.++|-+=+++ .| +.++-..+|.++..+
T Consensus 207 ~i~~~FR~E~~~-----t~rHl~EFt~lE~e~a~-------------~~~~~~lm~~~e~lv~~i 253 (437)
T PRK05159 207 EIGPVFRAEEHN-----TSRHLNEYTSIDVEMGF-------------IDDHEDVMDLLENLLRYM 253 (437)
T ss_pred EEeceeeCCCCC-----Ccccchhhheeeeeeee-------------cccHHHHHHHHHHHHHHH
Confidence 999999866542 11245688877665554 34 888888888777653
No 110
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=70.69 E-value=13 Score=43.71 Aligned_cols=150 Identities=9% Similarity=0.004 Sum_probs=86.1
Q ss_pred HHHHHHHHH-HHhCCceEeeeccccChHHHhhhcC--CCCCCcEEee----------------------------CCCCc
Q psy9573 498 QSLFSIRHQ-LAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELL----------------------------NPISK 546 (809)
Q Consensus 498 ~~~~~lr~~-L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~----------------------------NPis~ 546 (809)
.+.+-+++. ....||+|+.+-.+++.+.+..-+. .-..+...+. +.+..
T Consensus 228 aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~ 307 (517)
T PRK00960 228 AFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRD 307 (517)
T ss_pred HHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccccccccccc
Confidence 344445444 3456999999999999887664311 0001222232 22233
Q ss_pred cccccchhhHHHHHHHHHHH-hcCCCCCeeEEE-EeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCc
Q psy9573 547 KFNTMRSTLIGSLVNNICYN-LKRKLERIRLFE-IANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRN 624 (809)
Q Consensus 547 e~s~lR~SLlpgLL~~l~~N-~~~~~~~i~lFE-iG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~ 624 (809)
..-+||++--|.+....+.= +....=++++|+ .|.||+...+.-.+ -.-.+|..+.-+.+.+... ...
T Consensus 308 ~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~G---L~RV~eF~kvE~h~f~tpE-------qs~ 377 (517)
T PRK00960 308 PGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHG---LERVNEFHRIEIVWLGTPE-------QVE 377 (517)
T ss_pred ccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCC---CcccceeEEEEEEEEeCHH-------HHH
Confidence 44589999999988776622 111111599999 77999876421000 0013455555555554210 011
Q ss_pred CCHHHHHHHHHHHHHhcCCe-eee-ccCCCCcCcc
Q psy9573 625 IDYFDLKNDLENLFFPIKLN-FLK-INNSILHPNR 657 (809)
Q Consensus 625 ~df~dlKg~le~ll~~lgi~-~~~-~~~~~~hPgr 657 (809)
.-+.++....+.+++.||+. ++. .+.|||..|+
T Consensus 378 ee~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~~~~ 412 (517)
T PRK00960 378 EIRDELLKYAHILAEKLDLEYWREVGDDPFYLEGR 412 (517)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEecccccccccC
Confidence 12556667778888999998 544 5678887664
No 111
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=70.28 E-value=29 Score=35.53 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=51.3
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhhc
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYG 475 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yG 475 (809)
.....+.+.|.+-.|..++++-+.+.|+.+|+.++..++.+...+| +.--.+++|++.++|-
T Consensus 69 g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~-----~eev~~l~~~Lse~~~ 130 (190)
T PF09840_consen 69 GLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAP-----LEEVVELAERLSEIYK 130 (190)
T ss_pred CceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCC-----HHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999987775554443 3455788999999885
No 112
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=69.52 E-value=16 Score=42.63 Aligned_cols=113 Identities=13% Similarity=0.016 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee--C-C----CCccccccchhhHHHHHHHHHHHhcCC
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL--N-P----ISKKFNTMRSTLIGSLVNNICYNLKRK 570 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~--N-P----is~e~s~lR~SLlpgLL~~l~~N~~~~ 570 (809)
...+.+|++|...||.||-|-.+++..- . .. .+.+.+. | + .......|++| |.|..-+. . -+
T Consensus 141 ~i~~~~r~~~~~~gf~eV~TP~l~~~~~-e---g~--~~~F~v~~~~~~~~~~~~~~~~yL~~S--pql~lq~l--~-~g 209 (453)
T TIGR00457 141 ALSQAIHRYFQENGFTWVSPPILTSNDC-E---GA--GELFRVSTDGIDFSQDFFGKEAYLTVS--GQLYLETY--A-LA 209 (453)
T ss_pred HHHHHHHHHHHHCCCEEecCCeEeecCC-C---CC--CCceEecccccccchhccCCccccccC--HHHHHHHH--h-hc
Confidence 4678899999999999999998885421 0 00 1222232 1 0 11233457777 44443332 1 23
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
. =|+||||++|+.++.+ +..+..|.++|-+=+++ .|+.|+-..+|.++..+
T Consensus 210 ~--~rVf~i~~~FR~E~~~-----t~rHl~EFt~le~e~~~-------------~~~~dvm~~~E~lv~~i 260 (453)
T TIGR00457 210 L--SKVYTFGPTFRAEKSN-----TSRHLSEFWMIEPEMAF-------------ANLNDLLQLAETLIKYI 260 (453)
T ss_pred c--cCceEeeeccccCCCC-----CCcCcchhccceeeeec-------------CCHHHHHHHHHHHHHHH
Confidence 2 5789999999875432 12355677777654443 36888888888888754
No 113
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=68.75 E-value=16 Score=42.83 Aligned_cols=91 Identities=12% Similarity=-0.062 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC---CCCCCcEEeeCCCC---ccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ---NINNYPIELLNPIS---KKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~---~~~~~~i~L~NPis---~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
..++.+.+++.+...||+|+.+-.|.+.+.+..-.. .-..+...+..--. .+.-+||++.-|.+....+...+
T Consensus 41 ~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S 120 (472)
T TIGR00408 41 WKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKS 120 (472)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccC
Confidence 445677778888999999999999999887653210 00123445543211 23459999999999977766543
Q ss_pred CCCCCeeEEEEeeEEecC
Q psy9573 569 RKLERIRLFEIANVYLHD 586 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~ 586 (809)
++.-+++++++|+||+..
T Consensus 121 ~rdLPlr~~q~~~vfR~E 138 (472)
T TIGR00408 121 YTDLPLKINQWVNVFRYE 138 (472)
T ss_pred hhhcCHHHhheeeeecCC
Confidence 223359999999999854
No 114
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=68.61 E-value=3.8 Score=34.70 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=27.0
Q ss_pred ccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeE
Q psy9573 2 QIPENWLRTIINPKLSSNDLANLLTMSGLETEKI 35 (809)
Q Consensus 2 ~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v 35 (809)
.++.+.+++++-.+++.+++.+.|+.+|++++..
T Consensus 5 ~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 5 TLSLDKINKLLGIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp EEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-
T ss_pred EecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEEC
Confidence 5788999999999999999999999999999865
No 115
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=67.99 E-value=5.1 Score=47.78 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=59.1
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEe-CC--EEEEeCCCccCCCCcchhhhhhhhhhhcc
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQK-NN--IFLVIPPAHRFDLEIEEDIIEEIIRIYGF 476 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~-~~--~~~v~vP~~R~DI~~~~DliEEIaR~yGy 476 (809)
++|.+...++.+++ ..++.+++.+.|..+|++++.. ++ .+.+.+++.|.|...-.=|+-|++-++|-
T Consensus 2 p~i~~~~~~l~~~l-~~~~~~~l~~~l~~~~~eve~~~~~~~i~eieiTpNR~D~lS~~GiARel~a~~~~ 71 (551)
T TIGR00471 2 PTVTVYKDDLEDLL-IGTDRDEILEELPMMGDEIEGFDEESPEIKVEFNPNRPDLLSVEGLARSLRGYLGI 71 (551)
T ss_pred CEEEEcHHHHHHHh-cCCCHHHHHHHhcccccccccccCCcceEEEEcCCCCchhhhHHHHHHHHHHHhCC
Confidence 46899999999998 7888999999999999998643 22 38999999999999999999999999874
No 116
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.56 E-value=27 Score=40.25 Aligned_cols=138 Identities=12% Similarity=0.084 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc--CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK--RKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~--~~~ 571 (809)
...+.+-+++.+...||+|+.+-.+++.+....-+ +...++...|.+ +.-+||++-=+.+....+.... +..
T Consensus 176 ~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~----~~~~L~pTsE~~~~~~~~~~i~s~~~L 251 (418)
T TIGR00414 176 ERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED----TDLYLIPTAEVPLTNLHRNEILEEEEL 251 (418)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC----CCEEEEeCCcHHHHHHHhCcCCChHhC
Confidence 34456666888888999999999999998765432 111134456643 3358888755555444332221 223
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
++++|++|.||+...+. .|..+.. -.+|..+.-+...-.. .. ...-|.++....+.++..||+.|.
T Consensus 252 -Plr~~~~s~~FR~E~g~-~G~~t~GL~Rv~qF~k~E~~~f~~~-e~------s~~~~~~~~~~~~~i~~~Lglp~r 319 (418)
T TIGR00414 252 -PIKYTAHSPCFRSEAGS-YGKDTKGLIRVHQFNKVELVKFCKP-EE------SAEELEEMTSDAEQILQELELPYR 319 (418)
T ss_pred -CeeEEEEcccccCCCCc-cCCCCCccccccceeeeeEEEEcCH-HH------HHHHHHHHHHHHHHHHHHcCCceE
Confidence 59999999999865321 0001111 1244444433222110 11 122478899999999999998653
No 117
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=65.87 E-value=20 Score=46.28 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHH-HHHHHHhcCCCCCee
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLV-NNICYNLKRKLERIR 575 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL-~~l~~N~~~~~~~i~ 575 (809)
+..+.+|++|...||.||-|-.+++..- +.. ..++.. .|-...+ -+||.| |.|. +.+. --+. =|
T Consensus 775 ~i~~~iR~fl~~~gFlEVeTPiL~~~~g----Ga~--a~pF~t~~~~~~~~-~yLriS--PELylKrLi---vgG~--er 840 (1094)
T PRK02983 775 AVVRAVRETLVARGFLEVETPILQQVHG----GAN--ARPFVTHINAYDMD-LYLRIA--PELYLKRLC---VGGV--ER 840 (1094)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEeeccCC----Ccc--cceeEeeecCCCcc-chhhcC--hHHHHHHHH---hccc--Cc
Confidence 3567899999999999999999974321 100 112221 1322222 367766 4332 2222 1233 57
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||||++|+.++.+ ..+-.|.++|-+=.+ -.|+.|+-..+|.++..+
T Consensus 841 VFEIg~~FRnE~~~------~rHnpEFTmLE~y~a-------------~~dy~d~m~l~E~li~~i 887 (1094)
T PRK02983 841 VFELGRNFRNEGVD------ATHNPEFTLLEAYQA-------------HADYDTMRDLTRELIQNA 887 (1094)
T ss_pred eEEEcceecCCCCC------CCccccccchhhhhh-------------cCCHHHHHHHHHHHHHHH
Confidence 89999999876543 235556666543222 248999999999998764
No 118
>KOG1936|consensus
Probab=64.74 E-value=32 Score=39.15 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhCCceEeeeccccChHHHhh-hcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 499 SLFSIRHQLAFADYQEVINYSFIEDSLEKD-FSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 499 ~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
....+++.+...|+.++=|-.|--++.+.. .+.+ .+.|-=.-----|.=.||.-|.+.+-+-++-| +..+++-|
T Consensus 80 if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd--skLiYdlkDQGGEl~SLRYDLTVPfARylAmN---ki~sikRy 154 (518)
T KOG1936|consen 80 IFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED--SKLIYDLKDQGGELCSLRYDLTVPFARYLAMN---KITSIKRY 154 (518)
T ss_pred HHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc--cceeEehhhcCCcEEEeecccccHHHHHHHHc---ccccceee
Confidence 455677778888998888888876665432 2222 11111111123456689999999999999999 35679999
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
-|++||+.+.. .++....+|..+.-+=+.|...+ --.|+ +.-+++-.+|..|||
T Consensus 155 ~iAkVyRRd~P----~mtrGR~REFYQcDFDIAG~~d~-------M~pda-E~lkiv~e~L~~l~I 208 (518)
T KOG1936|consen 155 HIAKVYRRDQP----AMTRGRYREFYQCDFDIAGQFDP-------MIPDA-ECLKIVVEILSRLGI 208 (518)
T ss_pred eEEEEEeccCc----hhhchhhhhhhccCccccccCCC-------CCchH-HHHHHHHHHHhhcCc
Confidence 99999998754 24444567887777777774321 12233 455566667788875
No 119
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=64.43 E-value=37 Score=40.86 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCC-CCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNP-ISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NP-is~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
++.+.+|++|...||.||-|-.++....-. .....+... ...++-.|++| |.|..-+. ..-+. =|+
T Consensus 146 ~i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-------a~~f~v~~~~~~~~~~~L~qS--pql~kq~l--~~~g~--~rv 212 (588)
T PRK00476 146 KVTSAIRNFLDDNGFLEIETPILTKSTPEG-------ARDYLVPSRVHPGKFYALPQS--PQLFKQLL--MVAGF--DRY 212 (588)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeecCCCCC-------CccceecccccCCceeecCCC--HHHHHHHH--Hhccc--Cce
Confidence 467889999999999999999988532100 011112111 12233346655 44433321 11222 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||+||+.++.. +.-++ |.++|-+=+++ +|+.|+-..+|.++..+
T Consensus 213 fqi~~~FR~E~~~-----~~r~~-EFt~le~e~af-------------~~~~dvm~~~E~li~~i 258 (588)
T PRK00476 213 YQIARCFRDEDLR-----ADRQP-EFTQIDIEMSF-------------VTQEDVMALMEGLIRHV 258 (588)
T ss_pred EEEeceeecCCCC-----CCcCc-ccccceeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 9999999875532 11244 77777665554 47888888888887653
No 120
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=62.68 E-value=38 Score=41.51 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
+..+.+|++|...||.||-|-.++..... +. .+.+.-.+-...+.-.|++| |.|..-+.- .-+. =|+|
T Consensus 161 ~i~~~iR~fl~~~gFiEVeTPiL~~s~~e---GA---r~~~~p~~~~~~~~y~L~qS--PQlykq~lm--~~G~--~rvf 228 (706)
T PRK12820 161 RIIKCARDFLDSRGFLEIETPILTKSTPE---GA---RDYLVPSRIHPKEFYALPQS--PQLFKQLLM--IAGF--ERYF 228 (706)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCCC---CC---cceEEeeecCCCcceecCCC--HHHHHHHHH--hccC--CcEE
Confidence 46788999999999999999988853210 00 11111111011222336665 454443321 1232 5789
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFF 639 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~ 639 (809)
|||+||+..+.. .....|.++|-+=+++ +|+.++-..+|.++.
T Consensus 229 qI~~~FR~E~~~------t~r~pEFT~LE~E~af-------------~d~~dvm~l~E~li~ 271 (706)
T PRK12820 229 QLARCFRDEDLR------PNRQPEFTQLDIEASF-------------IDEEFIFELIEELTA 271 (706)
T ss_pred EEechhcCCCCC------CCcCccccccceeecc-------------CCHHHHHHHHHHHHH
Confidence 999999866542 1123577777655554 478888888887775
No 121
>PLN02903 aminoacyl-tRNA ligase
Probab=60.69 E-value=53 Score=39.92 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHh-CCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAF-ADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~-~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|.. .||.||-|-.++....... .+.+...+-...+.-.|++| |.|..-+. ..-+. =|+
T Consensus 208 ~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGa------rdf~v~~~~~~g~~y~L~qS--PQlykQ~L--m~~G~--~Rv 275 (652)
T PLN02903 208 RVVKLIRRYLEDVHGFVEIETPILSRSTPEGA------RDYLVPSRVQPGTFYALPQS--PQLFKQML--MVSGF--DRY 275 (652)
T ss_pred HHHHHHHHHHHhcCCeEEEECCeeccCCCCCC------cccEEeeecCCCcccccCCC--HHHHHHHH--HhccC--CcE
Confidence 467889999997 9999999998874421000 11111111111223346655 55544322 11232 578
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
||||+||+.++.. ...-.|.++|-+=++. +|+.|+-..+|.++..
T Consensus 276 FqIa~~FR~E~~~------t~RhpEFTqLE~E~sf-------------~d~~dvm~~~E~li~~ 320 (652)
T PLN02903 276 YQIARCFRDEDLR------ADRQPEFTQLDMELAF-------------TPLEDMLKLNEDLIRQ 320 (652)
T ss_pred EEEehhhccCCCC------CCcccceeeeeeeecC-------------CCHHHHHHHHHHHHHH
Confidence 9999999866542 1122677777765554 4788999999988764
No 122
>PLN02678 seryl-tRNA synthetase
Probab=60.22 E-value=50 Score=38.36 Aligned_cols=139 Identities=9% Similarity=0.040 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchh---hHHHHHHH-HHHHhcC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRST---LIGSLVNN-ICYNLKR 569 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~S---LlpgLL~~-l~~N~~~ 569 (809)
.+.+.+-+++.+...||+||.+-.++..+....-+ +...++..++.+. .++.-.+.|+ |.|..... +.+ +
T Consensus 177 ~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~h~~~~~s~---~ 252 (448)
T PLN02678 177 NQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAYHRGDWIDP---K 252 (448)
T ss_pred HHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCC-CCceeeecccccccChHHhcccCCH---H
Confidence 44566677778888999999999999988766432 1111344556432 1344455543 55444321 111 1
Q ss_pred CCCCeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeE-eeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 570 KLERIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAV-IAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 570 ~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~-~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
.. +++++|+|.||+...+. .|..+... .++..++-+ .++......+ ..-|.++.+..+.++..||+.|+
T Consensus 253 eL-Plr~~~~s~cfR~Eags-~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s------~~~~e~~l~~~~~i~~~L~lpyr 324 (448)
T PLN02678 253 EL-PIRYAGYSTCFRKEAGS-HGRDTLGIFRVHQFEKVEQFCITSPNGNES------WEMHEEMLKNSEDFYQSLGIPYQ 324 (448)
T ss_pred hC-CceeEEecccccccccc-CCCcCCcceEEEEEEEEEEEEEECCCchhH------HHHHHHHHHHHHHHHHHcCCCeE
Confidence 23 69999999999865431 01111111 234444433 2332211001 12478899999999999998654
No 123
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=57.38 E-value=81 Score=37.16 Aligned_cols=140 Identities=9% Similarity=0.001 Sum_probs=82.8
Q ss_pred hCCceEeeeccccChHHHhhhc--CCCCCCcEEe----------------------------eCCCCccccccchhhHHH
Q psy9573 509 FADYQEVINYSFIEDSLEKDFS--QNINNYPIEL----------------------------LNPISKKFNTMRSTLIGS 558 (809)
Q Consensus 509 ~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L----------------------------~NPis~e~s~lR~SLlpg 558 (809)
..||+|+..-.|++.+.+.... +....+...+ .+.+..+.-+||++--..
T Consensus 240 k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~p 319 (520)
T TIGR00415 240 KIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEP 319 (520)
T ss_pred hcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHH
Confidence 4599999999999998766531 1100112222 223344466799988888
Q ss_pred HHHHHHHHh-cCCCCCeeEEE-EeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHH
Q psy9573 559 LVNNICYNL-KRKLERIRLFE-IANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLEN 636 (809)
Q Consensus 559 LL~~l~~N~-~~~~~~i~lFE-iG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ 636 (809)
+....+.-+ ....-++++|. .|.||+...+...+ -.-..|..+.-++.-|... . ...-+.++.+..+.
T Consensus 320 ly~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrG---L~RvhEF~kvE~v~~~tpE-e------a~e~~e~mle~~~~ 389 (520)
T TIGR00415 320 FYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKG---LDRVHEFLRVECVWIAEPE-E------TEEIRDKTLELAED 389 (520)
T ss_pred HHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCC---CceeeEEEEEEEEEEeCHH-H------HHHHHHHHHHHHHH
Confidence 887776433 12222599999 66899876531000 0012455555555544211 0 11225567888889
Q ss_pred HHHhcCCeee--eccCCCCcCccE
Q psy9573 637 LFFPIKLNFL--KINNSILHPNRS 658 (809)
Q Consensus 637 ll~~lgi~~~--~~~~~~~hPgrs 658 (809)
+++.|++.|+ .++.|||..|++
T Consensus 390 ~l~~L~Lpyrv~~adDPFf~~g~k 413 (520)
T TIGR00415 390 AADELDLEWWTEVGDDPFYLEGRK 413 (520)
T ss_pred HHHHcCCCeEEeecCCcccccccC
Confidence 9999998653 456687776665
No 124
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=56.21 E-value=43 Score=39.97 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
...+.+|++|...||.||-|-.+++... +. . .+.+.+. --....+|++| |.|.+-+.- .-+. -++|
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~~-eg---g--a~~F~v~--yf~~~~~L~qS--pql~kq~li--~~g~--~rVf 283 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAPS-EG---G--ANVFKLE--YFNRFAYLAQS--PQLYKQMVL--QGDV--PRVF 283 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCCC-Cc---c--ccccccc--cCCCCeecCCC--HHHHHHHHH--hcCC--CCEE
Confidence 4678899999999999999988876431 10 0 1222221 12345577776 444433321 1122 5789
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||.||+.++.. +..+..|.++|-+=++ -..++.++-..+|.++..+
T Consensus 284 eI~p~FRaE~s~-----T~RHl~EFt~Le~E~~------------~~~~y~evm~~~e~l~~~i 330 (550)
T PTZ00401 284 EVGPVFRSENSN-----THRHLTEFVGLDVEMR------------INEHYYEVLDLAESLFNYI 330 (550)
T ss_pred EEeCeEeCCCCC-----CCCCccchhhhhhhhH------------hcCCHHHHHHHHHHHHHHH
Confidence 999999865432 1124456665543111 0136778888888887643
No 125
>PF03319 EutN_CcmL: Ethanolamine utilisation protein EutN/carboxysome; InterPro: IPR004992 The ethanolamine utilization protein EutN is involved in the cobalamin-dependent degradation of ethanolamine []. The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB: 2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a hole in the centre. This suggests that EutN forms a pore, with an opening of 26 Amstrong in diameter on one face and 14 Amstrong on the other face []. This entry represents a family of related bacterial proteins with roles in ethanolamine and carbon dioxide metabolism.; PDB: 2QW7_F 2RCF_E 2HD3_F 2Z9H_D.
Probab=55.34 E-value=33 Score=30.31 Aligned_cols=52 Identities=23% Similarity=0.209 Sum_probs=35.1
Q ss_pred eEEEEEEEEeeCC--CCCceeEEEEecCC----ceEEEEeCCCcccCCCEEEEEecCce
Q psy9573 45 IIIGKIINIIKHP--DIDNFNICKVDTYK----NILDIVCNIPNIRVGLKVPCAIIGSS 97 (809)
Q Consensus 45 vvvg~i~~~~~hp--~ad~L~~~~v~~g~----~~~~iv~ga~n~~~g~~v~~a~~Ga~ 97 (809)
-|+|.|.+-.||| ...||.++|.-..+ ...+|.+-.-...+|++|.++. |+.
T Consensus 5 rViG~vvaT~K~~~L~G~kLlivqp~~~~~~~~g~~~VA~D~vGAG~Ge~Vlv~~-Gs~ 62 (83)
T PF03319_consen 5 RVIGSVVATRKHPSLKGKKLLIVQPLDPDGQPTGEPIVAVDTVGAGVGEWVLVTS-GSS 62 (83)
T ss_dssp EEEEEEECSCE-GGGTTSEEEEEEEETTTSSEEEEEEEEEESS---TT-EEEEEE-THH
T ss_pred EEEeEEEEccccCCCCCCeEEEEEEcccCCCcCCCEEEEEeCCCCCCCCEEEEEC-CHH
Confidence 5899999999999 45667777766532 4556777777778999999987 654
No 126
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=49.68 E-value=26 Score=29.59 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=24.7
Q ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy9573 771 AFRCILQDPKKTLKNNIINNAINALINS 798 (809)
Q Consensus 771 ~~rl~~~~~~rTLt~~ev~~~~~~ii~~ 798 (809)
++++.+.++...||.++|.++|+.|+..
T Consensus 14 ~~ti~i~~pk~~lt~~~V~~~m~~ii~~ 41 (69)
T PF11148_consen 14 TFTISIPNPKEDLTEAEVKAAMQAIIAK 41 (69)
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 4677778999999999999999999874
No 127
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=48.19 E-value=11 Score=45.93 Aligned_cols=173 Identities=17% Similarity=0.087 Sum_probs=98.7
Q ss_pred EEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEe--cccccccceEEEEEecccCCCC--CHHH
Q psy9573 162 FVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKI--SAIDLCGRFSGRIIRGINPKAL--TPKW 237 (809)
Q Consensus 162 leieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i--~~~~~cp~y~~~vi~~v~v~~~--sp~~ 237 (809)
.+++..+.| |.+|..|+|+ ....+.+-. + +.. + .....+.. ......|+++.++++++.+. + +-..
T Consensus 43 ~~~~~~~~~-d~~~~~~~~~--~~~v~ie~~-~-~~~--~--~~~~~~i~~v~~~~~sP~~~~~~l~~~gir-~in~lVD 112 (650)
T COG0072 43 LKLEFPKIR-DLESAEGLAR--KIFLEIEAG-K-YAC--P--RYAGRVIKGVKVNAPSPLWLQARLRGVGIR-PINNLVD 112 (650)
T ss_pred Ccccccccc-cccccccccc--eeEeecccc-c-ccC--C--ccceEEEECcccCCCCCHHHHHHHHhcCCC-cHHHHHH
Confidence 677778888 9999999999 222222221 1 110 0 11122222 21357899999999999984 3 3478
Q ss_pred HHHHHHHC-CCCcccHhHHHHHHHHHHhCCCCC---------cccccccC---CCEEEEEcCCCCeEEecCCee-eeecC
Q psy9573 238 MKIRLEDS-GQKLVSVLHDITNYVMLELGIPIN---------IFDLSKIS---GELNIRWGNIGETIKISNDLI-IKIDK 303 (809)
Q Consensus 238 lq~rL~~~-g~~~in~iVDitNyv~le~GqPlh---------~fD~dki~---~~i~vr~a~~~e~~~~L~~~~-~~l~~ 303 (809)
+|+.++.. |++. + .+|+.-+-. +.|++ .-|..+-. +...+....++. .|.|-- ..-.+
T Consensus 113 itnyv~l~~Gqp~-h-~~d~~~~~~---~i~vr~a~~~e~~~~ld~~~~~l~~~~~vi~d~~~~~---alagv~g~~~s~ 184 (650)
T COG0072 113 ITNYVHLELGQPR-H-AFDIGKIDG---KIPVRYAKEGETLVFLDGKERELLTGDLVIADHEKGL---ALAGVMGGADSE 184 (650)
T ss_pred HHHHHHHHhCCcc-h-HhhhhhccC---ceEEEEccCCCceEecCCcceeeCCCCEEEEeCCCce---eeeeeeeccccC
Confidence 99999886 6553 2 234333222 22222 11111110 112222222222 111000 00012
Q ss_pred CcEEEEeCC-ceeEecccccCccc-eeecCCceEEEEEeecCchhHhhhcc
Q psy9573 304 NIGIISDNF-KIISLSGIINGFDA-SVTLNTKDIYLGVAFWWPNSIRGKSN 352 (809)
Q Consensus 304 ~~lvi~D~~-~~lslagi~g~~~s-~v~~~T~~illE~a~F~p~~Ir~t~r 352 (809)
-+..+.|-. .+.+++|++.+..| +++..|+..+......||..+.....
T Consensus 185 ~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~al~ 235 (650)
T COG0072 185 VDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEKALN 235 (650)
T ss_pred CCccceeeeeeeEecChHHHHhhcccccCCcceeEEeecCCCHHHHHHHHH
Confidence 334445544 68899999999999 99999999999999999988876543
No 128
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=47.77 E-value=71 Score=34.47 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=50.6
Q ss_pred CEEEEE-EEeecHHHHHhCCCCCceEEEEeehHHHhcccCCccccCCCC--CCceeeEEEEEcCCC-----CHHHHHHHH
Q psy9573 665 TKNIGF-IGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKF--PNVVRDIVFIFNKNI-----NLQDVMDTM 736 (809)
Q Consensus 665 g~~iG~-iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~~~~~~~skf--P~~~RDlS~vv~~~~-----~~~~i~~~i 736 (809)
++.+|| +|-..|...+.+++..|+|..=++ +.+.... .. -+.+.| |.+.=.|+|++.++. +.+++.++|
T Consensus 55 ~~~~G~KvG~ts~a~q~~~gv~~P~~g~l~~-~~~~~~g-~~-~~~~~~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai 131 (267)
T TIGR02312 55 RRVIGHKIGLTSRAMQQASNIDEPDYGVLLD-DMFFEDG-ST-IPADRFIQPRVEVELAFVLKKDLEGPNVTIFDVLNAT 131 (267)
T ss_pred CceeEEEEecCCHHHHHHcCCCCCeeEEecC-ccccCCC-Ce-eccccccccccceEEEEEECCCCCCCCCCHHHHHHHh
Confidence 456666 777889999999999999865444 2222111 11 233556 999999999999876 567888887
Q ss_pred Hhc
Q psy9573 737 FFE 739 (809)
Q Consensus 737 ~~~ 739 (809)
...
T Consensus 132 ~~v 134 (267)
T TIGR02312 132 DYV 134 (267)
T ss_pred heE
Confidence 654
No 129
>TIGR02703 carboxysome_A carboxysome peptide A. This model distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins, also belonging to Pfam family pfam03319, participate in other types of shell such as the ethanolamine degradation organelle.
Probab=43.70 E-value=1e+02 Score=27.14 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=34.7
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecC-CceEEEEeCCCcccCCCEEEEEecCc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTY-KNILDIVCNIPNIRVGLKVPCAIIGS 96 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g-~~~~~iv~ga~n~~~g~~v~~a~~Ga 96 (809)
-|+|.|.+-.|||.=...++.-|..- .....|..-.-...+|++|.++ -|+
T Consensus 5 kViG~vvaT~K~~~L~g~kLliVq~~~~g~~~VAvD~vGAG~Ge~Vlv~-~Gs 56 (81)
T TIGR02703 5 QVEKTLVSTNRIADMGHKPLLVVWEKPGGARQVAVDAIGCKPGDWVLCV-GSS 56 (81)
T ss_pred EEEeEEEEeeecCCCCCcEEEEEEEcCCCCEEEEEECCCCCCCCEEEEe-CCH
Confidence 58999999999997666666666531 1224455555556788999886 454
No 130
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=41.09 E-value=48 Score=38.89 Aligned_cols=176 Identities=9% Similarity=-0.046 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC---CCCCCcEEeeCC---CCccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ---NINNYPIELLNP---ISKKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~---~~~~~~i~L~NP---is~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
...+.+.+++.+...||+|+.+-.|...+....-.. ....+...+..- -..+.-+||++.-+++....+.-.+
T Consensus 47 ~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~S 126 (477)
T PRK08661 47 WENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQS 126 (477)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcc
Confidence 445677788899999999999999999887532110 001233444321 1145678999997777766655442
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeE--eeeCCCCCCCCCCCCCcCCHHHHHHHHHHHH-HhcCC
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAV--IAYGPLLEPQWGEENRNIDYFDLKNDLENLF-FPIKL 643 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~--~~~G~~~~~~w~~~~~~~df~dlKg~le~ll-~~lgi 643 (809)
++.-+++++++|+||+..... .. ..+|..+.-+ +.+. ......-+.++......++ +.||+
T Consensus 127 yrdLPlrl~q~~~vfR~E~~~------rgl~R~rEF~~~E~h~~~~~--------~eea~~e~~~~l~~y~~i~~~~Lgl 192 (477)
T PRK08661 127 YRDLPLLYNQWVNVVRWETKT------RPFLRTREFLWQEGHTAHAT--------EEEAEEETLEMLEIYKEFFEDYLAI 192 (477)
T ss_pred hhhcCHHHhcccceeeCCCCC------CCcceeeeEEEcceeeeeCC--------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222369999999999854311 00 0122221111 0000 0001123566777888888 88898
Q ss_pred eeeeccCC---CCc---CccEEEEEE-CCE--EEEEEEeecHHHHHhCCCC
Q psy9573 644 NFLKINNS---ILH---PNRSALIFK-KTK--NIGFIGEIHPILQQKYDLP 685 (809)
Q Consensus 644 ~~~~~~~~---~~h---PgrsA~I~~-~g~--~iG~iGelhP~vl~~~~i~ 685 (809)
.+.....+ -|+ ..-..+.++ +|+ .+|.+-.+--...++|+|.
T Consensus 193 p~~~~~~~~~ekf~ga~~~~~ie~~~~dgr~~q~gt~~~Lg~~~s~~f~i~ 243 (477)
T PRK08661 193 PVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIK 243 (477)
T ss_pred eEEEEecChHHhhCCCcceeEEEEEeCCCCEEEEEEecccccchhHhcCCE
Confidence 65332111 111 111223333 343 4455444444566777875
No 131
>PF13592 HTH_33: Winged helix-turn helix
Probab=41.00 E-value=20 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.403 Sum_probs=24.2
Q ss_pred hhhhcccCcccCHHHHHHHHHhcCCEEE
Q psy9573 416 ERVIKILGIKLTNQEISNIFIRLKFHFI 443 (809)
Q Consensus 416 ~~i~~~lG~~i~~~~i~~iL~~Lgf~v~ 443 (809)
..|.+-.|+.++.+.+-++|++|||+..
T Consensus 12 ~~I~~~fgv~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 12 AYIEEEFGVKYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HHHHHHHCCEEcHHHHHHHHHHcCCccc
Confidence 4677788999999999999999999753
No 132
>COG0298 HypC Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=40.75 E-value=61 Score=28.33 Aligned_cols=40 Identities=28% Similarity=0.371 Sum_probs=28.9
Q ss_pred EEEEEEEeeCCCCCceeEEEEecCC--c--eEEEEeCCCcccCCCEEEEEe
Q psy9573 47 IGKIINIIKHPDIDNFNICKVDTYK--N--ILDIVCNIPNIRVGLKVPCAI 93 (809)
Q Consensus 47 vg~i~~~~~hp~ad~L~~~~v~~g~--~--~~~iv~ga~n~~~g~~v~~a~ 93 (809)
-|+|+++...-+ +..||+|+ . .+..+|. .++.|++|.|=.
T Consensus 6 PgqI~~I~~~~~-----~A~Vd~gGvkreV~l~Lv~~--~v~~GdyVLVHv 49 (82)
T COG0298 6 PGQIVEIDDNNH-----LAIVDVGGVKREVNLDLVGE--EVKVGDYVLVHV 49 (82)
T ss_pred ccEEEEEeCCCc-----eEEEEeccEeEEEEeeeecC--ccccCCEEEEEe
Confidence 478888865422 78999997 2 3445666 899999998854
No 133
>TIGR02704 carboxysome_B carboxysome peptide B. This model distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins, also belonging to Pfam family pfam03319, participate in other types of shell such as the ethanolamine degradation organelle.
Probab=40.65 E-value=1.2e+02 Score=26.58 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=31.3
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEe
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAI 93 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~ 93 (809)
-|+|.|.+-.|||.=...++.-|..-.....|..-.-...+|++|.++.
T Consensus 5 kViG~vvaT~K~~~L~g~kLliv~~~~g~~~VAvD~vGAG~Ge~Vlv~~ 53 (80)
T TIGR02704 5 RVMSDLVCTRRIPGLKNASLRVLRDAKGKISVAVDPVGAPEGKWVFTAS 53 (80)
T ss_pred EEEeEEEEeeecCCCCCcEEEEEEeCCCCEEEEEECCCCCCCCEEEEeC
Confidence 5899999999999655444444443222344544444456788888874
No 134
>cd01614 EutN_CcmL Ethanolamine utilisation protein and carboxysome structural protein domain family. Beside the Escherichia coli ethanolamine utilization protein EutN and the Synechocystis sp. carboxysome (beta-type) structural protein CcmL, this family also includes alpha-type carboxysome structural proteins CsoS4A and CsoS4B (previously known as OrfA and OrfB), propanediol utilizationprotein PduN, and some hypothetical homologous of various bacterial microcompartments. The carboxysome, a polyhedral organelle, participates in carbon fixation by sequestering enzymes. It is the prototypical bacterial microcompartment. Its enzymatic components, ribulose bisphosphate carboxylase/oxygenase(RuBisCO) and carbonic anhydrase (CA), are surrounded by a polyhedral protein shell. Similarly, the ethanolamine utilization (eut) microcompartment, and the 1,2-propanediol utilization (pdu) microcompartment encapsulate the enzymes necessary for the process of cobalamin-dependent ethanolamine degradation,
Probab=39.45 E-value=1.3e+02 Score=26.67 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=32.0
Q ss_pred eEEEEEEEEeeCCC--CCceeEEEEecCC----ceEEEEeCCCcccCCCEEEEEe
Q psy9573 45 IIIGKIINIIKHPD--IDNFNICKVDTYK----NILDIVCNIPNIRVGLKVPCAI 93 (809)
Q Consensus 45 vvvg~i~~~~~hp~--ad~L~~~~v~~g~----~~~~iv~ga~n~~~g~~v~~a~ 93 (809)
-|+|.|.+-.|||. ..||-+++.-..+ ....|..-.-..-+|++|.++.
T Consensus 5 kViG~vvaT~K~~~L~G~kLliVq~~~~~~~~~g~~~VA~D~vGAG~Ge~Vlv~~ 59 (83)
T cd01614 5 RVIGTVVATRKHPSLAGKKLLVVQPLDGEGKPKGEPLVAVDPVGAGVGEWVLVAT 59 (83)
T ss_pred EEEeEEEEeeEcCCCCCcEEEEEEECccCCCcCCCEEEEEECCCCCCCCEEEEeC
Confidence 58999999999995 5566666633222 2344544444456788888874
No 135
>KOG1885|consensus
Probab=35.96 E-value=24 Score=40.55 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHH-HHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLV-NNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL-~~l~~N~~~~~~~i~l 576 (809)
+....||.+|-++||-||-|-.+.... +....+..|.=-|-+--+ =+||- .|-|. +-+- =-+. -|+
T Consensus 230 kII~~iRkfld~rgFlEVETPmmn~ia-----GGA~AkPFIT~hndldm~-LylRi--APEL~lK~Lv---VGGl--drV 296 (560)
T KOG1885|consen 230 KIISYIRKFLDSRGFLEVETPMMNMIA-----GGATAKPFITHHNDLDMD-LYLRI--APELYLKMLV---VGGL--DRV 296 (560)
T ss_pred HHHHHHHHHhhhcCceEecchhhcccc-----CccccCceeecccccCcc-eeeee--chHHHHHHHH---hccH--HHH
Confidence 467789999999999999987665432 111012234433433221 24553 23331 1111 0122 478
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcC--C--eeeeccCCC
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK--L--NFLKINNSI 652 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lg--i--~~~~~~~~~ 652 (809)
||||+.|+..+-+ .++-.|...+-+-.+ -.|++|+...-|.++..+- + .++- .
T Consensus 297 YEIGr~FRNEGID------lTHNPEFTTcEfY~A-------------Yady~dlm~~TE~l~s~mv~~i~G~~~i----~ 353 (560)
T KOG1885|consen 297 YEIGRQFRNEGID------LTHNPEFTTCEFYMA-------------YADYEDLMDMTEELLSGMVKNITGSYKI----T 353 (560)
T ss_pred HHHHHHhhhcCcc------cccCCCcchHHHHHH-------------HhhHHHHHHHHHHHHHHHHHhhcCceeE----e
Confidence 9999999977654 233334443322111 2478888888887776542 1 1221 1
Q ss_pred CcC----ccEEEEEECCEEEEEEEeecHHHHHhCCCCCc
Q psy9573 653 LHP----NRSALIFKKTKNIGFIGEIHPILQQKYDLPLA 687 (809)
Q Consensus 653 ~hP----grsA~I~~~g~~iG~iGelhP~vl~~~~i~~~ 687 (809)
+|| ....++-+.-. .= -=+++|.+.+.++++-|
T Consensus 354 y~p~~~~~~~~eldf~~p-fr-ri~mi~~L~k~lgi~l~ 390 (560)
T KOG1885|consen 354 YHPNGPEEPELELDFTRP-FR-RIEMIEELEKELGIKLP 390 (560)
T ss_pred ecCCCCCCCceeeeccCC-ee-eeeHHHHHHHHhCCCCC
Confidence 232 11233322221 11 12567888999988754
No 136
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=34.06 E-value=1.6e+02 Score=31.51 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=48.0
Q ss_pred EEEEE-EEeecHHHHHhCCCCCceEEEEeehHHHhcccCCccccCCCCCCceeeEEEEEcCCC-----CHHHHHHHHHhc
Q psy9573 666 KNIGF-IGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNI-----NLQDVMDTMFFE 739 (809)
Q Consensus 666 ~~iG~-iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~~~~~~~skfP~~~RDlS~vv~~~~-----~~~~i~~~i~~~ 739 (809)
+.+|| +|-..|...+.+++..|+|..=++=--+..........+ .+|.++=.|+|++.++. +.+++.+++...
T Consensus 51 ~~~G~K~g~ts~~~~~~~gv~~P~~g~l~~~~~~~~g~~i~~~~~-~~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v 129 (255)
T TIGR03220 51 RIIGKKIGVTSKAVMNMLGVYQPDFGYLLDGMVYNEGEPIPTDTL-IQPKAEGEIAFVLKKDLMGPGVTAADVLAATECV 129 (255)
T ss_pred eeEEEEEecCCHHHHHHhCCCCCcEEEeeccccccCCCeeccccC-ccceeeeEEEEEECCCCCCCCCCHHHHHHHHhhe
Confidence 34555 666789999999999998765544211211111112222 36889999999999864 677887777654
No 137
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=33.57 E-value=1.3e+02 Score=32.45 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=46.6
Q ss_pred EEEEE-EEeecHHHHHhCCCCCceEEEEeehHHHhcccCCccccCCCCCCceeeEEEEEcCCC-----CHHHHHHHHHhc
Q psy9573 666 KNIGF-IGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNI-----NLQDVMDTMFFE 739 (809)
Q Consensus 666 ~~iG~-iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~~~~~~~skfP~~~RDlS~vv~~~~-----~~~~i~~~i~~~ 739 (809)
+.+|| +|-..|...+.+++..|+|.-=++--.+..........+ .+|.++=.|+|++..+. +.+++.++|...
T Consensus 59 ~~~G~Kvg~ts~~~q~~~gv~~P~~g~l~~~~~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v 137 (263)
T TIGR03218 59 KIVGLKAGLTSWAKMKQMGVETPVFGFLVDYFSVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFV 137 (263)
T ss_pred ceeEEEEecCCHHHHHhcCCCCCeeeeecccccccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEE
Confidence 34555 677789999999999998764433111111111111222 45899999999998866 456777777643
No 138
>PLN02320 seryl-tRNA synthetase
Probab=33.05 E-value=51 Score=38.79 Aligned_cols=134 Identities=10% Similarity=0.093 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCC-CcEEeeCCCCccccccchhhHHHHHHHHHHHh---cCC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINN-YPIELLNPISKKFNTMRSTLIGSLVNNICYNL---KRK 570 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~-~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~---~~~ 570 (809)
+.+.+-.++.+...||+|+.+-.++..+....-+ +.... ...++.+ +++-.+-|+=.|- .+...|. .+.
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~---ed~~Li~TaE~Pl--~~~~~~~ils~~d 311 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDG---SDQCLIGTAEIPV--GGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECC---CceEEeecccccc--cccccccccCHhh
Confidence 4566677777788899999999999998766432 21001 2344433 2332222222220 0111111 122
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEe-EeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIA-VIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~-~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
. ++|+++.|.||+...+. .|..+... .++..++- .++|-.. ....-|.++....+.+++.||+.|
T Consensus 312 L-PlRy~~~s~cFR~EAgs-~G~d~rGL~RvhQF~KvE~~if~~pe--------qs~~e~e~ll~~~e~i~~~LgLpy 379 (502)
T PLN02320 312 L-PLKYVAFSHCFRTEAGA-AGAATRGLYRVHQFSKVEMFVICRPE--------ESESFHEELIQIEEDLFTSLGLHF 379 (502)
T ss_pred C-CceeEEecccccccccc-CCCcCCCceeeeeeecccEEEEECHH--------HHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3 59999999999865431 01111111 12333222 2233210 112237789999999999999854
No 139
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=32.56 E-value=3.3e+02 Score=31.81 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=49.9
Q ss_pred ccccccchhhHHHHHHHHHHHhc--C-CCCCeeEEEEeeEEecCCCCCCCCCcc-CCccceeEEeE-eeeCCCCCCCCCC
Q psy9573 546 KKFNTMRSTLIGSLVNNICYNLK--R-KLERIRLFEIANVYLHDKFIKDSPFTV-SGYKELKKIAV-IAYGPLLEPQWGE 620 (809)
Q Consensus 546 ~e~s~lR~SLlpgLL~~l~~N~~--~-~~~~i~lFEiG~Vf~~~~~~~~~~~~~-~~~~E~~~l~~-~~~G~~~~~~w~~ 620 (809)
++.-+||+....|+.-..+..++ | .. +++++|+|+||+..... .+- .-.+|....-+ +++-...
T Consensus 157 ~~~~~lRpetaqg~~~~f~~~~~syr~dL-Plr~aq~g~~~RnE~s~----~~gL~RvReF~q~e~hiF~~peq------ 225 (456)
T PRK04173 157 KSLGYLRPETAQGIFVNFKNVLRTARKKL-PFGIAQIGKSFRNEITP----RNFIFRTREFEQMELEFFVKPGT------ 225 (456)
T ss_pred CcceeeccccchhHHHHHHHHHHhccccC-CeeeeEEchhHhCccCC----CCCceeeceeeeeEEEEEECcCh------
Confidence 34567899888888877666554 3 33 59999999999864321 000 01133332222 2232110
Q ss_pred CCCcCCHHHHHHHHHHHHHhcCCe
Q psy9573 621 ENRNIDYFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 621 ~~~~~df~dlKg~le~ll~~lgi~ 644 (809)
..--+......+..++..+|+.
T Consensus 226 --~~~e~~~~l~~~~~~l~~lG~~ 247 (456)
T PRK04173 226 --DNEWFAYWIELRKNWLLDLGID 247 (456)
T ss_pred --HHHHHHHHHHHHHHHHHHcCCC
Confidence 1112666777788888888873
No 140
>PF08536 Whirly: Whirly transcription factor; InterPro: IPR013742 This is a family of plant transcription factors. ; PDB: 3R9Y_A 3N1I_A 3N1K_A 3RA0_A 3N1H_A 3N1J_A 3N1L_A 3R9Z_A 1L3A_D.
Probab=31.15 E-value=74 Score=30.77 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=43.6
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCce--eeeEEecCCC-CCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCC
Q psy9573 5 ENWLRTIINPKLSSNDLANLLTMSGLE--TEKIETNIPI-FSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIP 81 (809)
Q Consensus 5 ~~WL~e~v~~~~~~~el~~~Lt~~G~E--Ve~v~~~~~~-~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~ 81 (809)
|+|=++-+ +.+|+.|+...|. .|-- .|-.++.... -+.=.|-|+++++|||+..-..+ .++++-+..
T Consensus 47 YDW~kKq~-FsLS~tEvG~ll~-l~~~~s~effHdP~~~~s~~G~v~K~Lkv~p~~dgsg~f~--------~Lsv~~~~~ 116 (139)
T PF08536_consen 47 YDWSKKQT-FSLSPTEVGSLLS-LGARESCEFFHDPNMGSSNEGKVRKSLKVEPLPDGSGYFF--------NLSVQNKLL 116 (139)
T ss_dssp B-GGG-EE-EEE-HHHHHHHHT---TT--EEEEE-TTTTSTTTTSEEEEEEEEE-TTSSEEEE--------EEEEEECCC
T ss_pred cccccceE-EEEcHHHhhhhhh-hccCCceEEEeccccCCCCCCceEEEEEeEECCCCCceEE--------EEEEecccc
Confidence 56766643 5789999999888 4432 4444555432 23457899999999998543221 245555555
Q ss_pred cccCCCEEEEE
Q psy9573 82 NIRVGLKVPCA 92 (809)
Q Consensus 82 n~~~g~~v~~a 92 (809)
|......|||-
T Consensus 117 ~~~~~~~ipVt 127 (139)
T PF08536_consen 117 NGDENFSIPVT 127 (139)
T ss_dssp TEEEEEEEEEE
T ss_pred cccceEEEech
Confidence 55544455553
No 141
>PRK15448 ethanolamine catabolic microcompartment shell protein EutN; Provisional
Probab=31.07 E-value=1.9e+02 Score=26.33 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=32.0
Q ss_pred eEEEEEEEEeeCCCCC--ceeEEEEe-cCC---ceEEEEeCCCcccCCCEEEEEecCce
Q psy9573 45 IIIGKIINIIKHPDID--NFNICKVD-TYK---NILDIVCNIPNIRVGLKVPCAIIGSS 97 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad--~L~~~~v~-~g~---~~~~iv~ga~n~~~g~~v~~a~~Ga~ 97 (809)
-|+|.|.+-.|||.=. ||-+++-- ... ....|..-.-...+|++|.++. |+.
T Consensus 5 kViG~vvaT~K~~~L~G~kLliVq~~~~~~~~~g~~~VAvD~vGAG~Ge~Vlv~~-Gss 62 (95)
T PRK15448 5 VVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVS-GSS 62 (95)
T ss_pred EEEeEEEEeeecCCCCCcEEEEEEECccCCCcCCCEEEEEECCCCCCCCEEEEeC-ChH
Confidence 5899999999999554 55555531 111 2233434444456788888875 543
No 142
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=31.05 E-value=66 Score=36.66 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
...+.+++++.+...||..|.|-.+---+-+... .....++.+++.+.-++. -+||+-+.+.+-.....-.+. .+.
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~~~~~--~P~ 96 (390)
T COG3705 20 KEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGR-LGLRPDFTIPVARIHATLLAG--TPL 96 (390)
T ss_pred HHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCe-EEecccccHHHHHHHHHhcCC--CCc
Confidence 4457888899999999999998777665543333 111125678999999998 899999999999999887766 459
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
|+-=-|+||+..+.. .....|..++|+=+.|.
T Consensus 97 Rl~Y~G~Vfr~~~~~------~g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 97 RLSYAGKVFRAREGR------HGRRAEFLQAGIELLGD 128 (390)
T ss_pred eeeecchhhhcchhc------cCcccchhhhhhHHhCC
Confidence 999999999876321 11223777877766663
No 143
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=30.12 E-value=73 Score=38.63 Aligned_cols=90 Identities=8% Similarity=-0.107 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
...+.+-+++.+...||+||.|-.+.+.+.....+ ..-.++...+.. ..+.-+||++--|++....+.... .+.-
T Consensus 230 ~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~SyrdL 307 (613)
T PRK03991 230 RDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTISYKNL 307 (613)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcCchhhC
Confidence 44567778888999999999999887765443321 100123444432 245668999999998766554432 1222
Q ss_pred CeeEEEEee-EEecCC
Q psy9573 573 RIRLFEIAN-VYLHDK 587 (809)
Q Consensus 573 ~i~lFEiG~-Vf~~~~ 587 (809)
+++++|+|+ +|+...
T Consensus 308 Plr~~e~~~~~fR~E~ 323 (613)
T PRK03991 308 PLKMYELSTYSFRLEQ 323 (613)
T ss_pred ChhhheecchheeCCC
Confidence 699999999 998653
No 144
>PLN02837 threonine-tRNA ligase
Probab=29.18 E-value=64 Score=39.14 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc--CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK--RKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~--~~~ 571 (809)
.+.+.+-+++.+...||+||.|-.+.+.+....-+. .-.++...+.+ +..+.-+|||+=.|......+.-.+ |..
T Consensus 250 ~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~~SyrdL 328 (614)
T PLN02837 250 RHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKLHSYRDL 328 (614)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCccCChhHC
Confidence 445677778888889999999999999987654321 10122333321 2245558999998886544432221 233
Q ss_pred CCeeEEEEeeEEecCC
Q psy9573 572 ERIRLFEIANVYLHDK 587 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~ 587 (809)
+++++|+|+||+...
T Consensus 329 -Plr~~~~~~~~R~E~ 343 (614)
T PLN02837 329 -PIRVAELGTVYRYEL 343 (614)
T ss_pred -CHhhEeecccccCCC
Confidence 599999999998643
No 145
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=28.29 E-value=1.5e+02 Score=26.09 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=28.8
Q ss_pred EEEEEEEeeCCCCCceeEEEEecCCceEE----EEeCC-CcccCCCEEEEEe
Q psy9573 47 IGKIINIIKHPDIDNFNICKVDTYKNILD----IVCNI-PNIRVGLKVPCAI 93 (809)
Q Consensus 47 vg~i~~~~~hp~ad~L~~~~v~~g~~~~~----iv~ga-~n~~~g~~v~~a~ 93 (809)
-|||+++... .+....|+.++..++ .|+.. |.+.+|++|.|-.
T Consensus 6 P~kVi~i~~~----~~~~A~vd~~Gv~r~V~l~Lv~~~~~~~~vGDyVLVHa 53 (82)
T PRK10413 6 PGQVLAVGED----IHQLAQVEVCGIKRDVNIALICEGNPADLLGQWVLVHV 53 (82)
T ss_pred ceEEEEECCC----CCcEEEEEcCCeEEEEEeeeeccCCcccccCCEEEEec
Confidence 4889998543 255778888872222 35543 5789999998853
No 146
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=28.13 E-value=30 Score=42.62 Aligned_cols=66 Identities=14% Similarity=0.253 Sum_probs=57.6
Q ss_pred EeehhhhhcccCcc-cCHHHHHHHHHhcCCEEEE--------eCC-EEEEeCCCccCCCCcchhhhhhhhhhhccC
Q psy9573 412 KVRSERVIKILGIK-LTNQEISNIFIRLKFHFIQ--------KNN-IFLVIPPAHRFDLEIEEDIIEEIIRIYGFE 477 (809)
Q Consensus 412 ~l~~~~i~~~lG~~-i~~~~i~~iL~~Lgf~v~~--------~~~-~~~v~vP~~R~DI~~~~DliEEIaR~yGyd 477 (809)
.+++.+++.++-++ ++.+.+.+.|..-|+.++. .+| .+.+.+++.|.|...-.=++-|+|-++|-.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~iiei~iTpNR~D~lS~~GiARElaA~~~~~ 77 (704)
T CHL00192 2 KISLKWLKELINLENIDLDTLINKLTLAGFEVEDILSVKIGGESDIILDISSTANRSDVLSIQGLSREISALFNSD 77 (704)
T ss_pred cccHHHHHHhcCcccCCHHHHHhhccCCCccccceeeeccCCCCCEEEEEeCCCChHHHHHhHHHHHHHHHHhCCC
Confidence 46788999999999 9999999999999998842 123 589999999999999999999999999844
No 147
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=27.87 E-value=1.9e+02 Score=30.69 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=64.4
Q ss_pred ecCchhHhhhccccCCCcc--c-----ccccccC--CCHHhHHHHHHHHHHHHHHHhCCccccccceEeeeecCCcceEE
Q psy9573 341 FWWPNSIRGKSNHYNLVTE--S-----SYRFERG--IDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEI 411 (809)
Q Consensus 341 ~F~p~~Ir~t~r~l~l~td--a-----s~Rferg--vD~~~~~~al~~~~~ll~~~~gg~~~~~~~~~~~~~~~~~~~~I 411 (809)
.|.-..||..|+++|+..- . +.|+.-| ++++.... .+.+=..|.++ |-. .+-. ........|
T Consensus 143 ~l~K~eIr~la~~~gl~~~~~ps~~Cl~sr~~~g~~it~~~l~~-v~~~E~~l~~~-g~~-----~~rv--r~~~~~a~i 213 (252)
T TIGR00268 143 GITKKEIREIAKSLGISFPDKPSEACLASRFPFGREIDEEKLKM-VDEAEEVLRNA-GVG-----QVRV--RNYDNLAVI 213 (252)
T ss_pred CCCHHHHHHHHHHcCCCccCCCCCCceEeecCCCCcCCHHHHHH-HHHHHHHHHHc-CCC-----eEEE--EecCCeEEE
Confidence 5688899999999999742 2 3587655 88887665 66666667664 422 1111 112345789
Q ss_pred EeehhhhhcccCcccCHHHHHHHHHhcCCEE
Q psy9573 412 KVRSERVIKILGIKLTNQEISNIFIRLKFHF 442 (809)
Q Consensus 412 ~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v 442 (809)
.+..+.+.+++-. .++|.+.|+.+||..
T Consensus 214 e~~~~~~~~~~~~---~~~i~~~~~~~gf~~ 241 (252)
T TIGR00268 214 EVPEDELSKLLNE---AEEVRDKFKDIGFRK 241 (252)
T ss_pred EECHHHHHHHHhh---HHHHHHHHHHcCCCe
Confidence 9999999998865 578999999999975
No 148
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=27.61 E-value=39 Score=35.98 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=56.9
Q ss_pred cccCHHHHHHHHHhcCCEEEE--eCCEEEEeCCCc-cC--CCCcchhhhhhhhhhhccCCCCCCCCCccc--cCCCCCcc
Q psy9573 424 IKLTNQEISNIFIRLKFHFIQ--KNNIFLVIPPAH-RF--DLEIEEDIIEEIIRIYGFENIPISLPITVS--KISPIKEG 496 (809)
Q Consensus 424 ~~i~~~~i~~iL~~Lgf~v~~--~~~~~~v~vP~~-R~--DI~~~~DliEEIaR~yGydnip~~~p~~~~--~~~~~~~~ 496 (809)
..+++++|.++.+.+|+.+.. ...++.-..|.- +. +-...++-+|+.+|-.|+..+--..-.... ...+ ...
T Consensus 142 ~~l~K~eIr~la~~~gl~~~~~ps~~Cl~sr~~~g~~it~~~l~~v~~~E~~l~~~g~~~~rvr~~~~~a~ie~~~-~~~ 220 (252)
T TIGR00268 142 FGITKKEIREIAKSLGISFPDKPSEACLASRFPFGREIDEEKLKMVDEAEEVLRNAGVGQVRVRNYDNLAVIEVPE-DEL 220 (252)
T ss_pred cCCCHHHHHHHHHHcCCCccCCCCCCceEeecCCCCcCCHHHHHHHHHHHHHHHHcCCCeEEEEecCCeEEEEECH-HHH
Confidence 357899999999999998742 223544444432 22 344568999999999999887533221110 1111 111
Q ss_pred hHH---HHHHHHHHHhCCceEe
Q psy9573 497 YQS---LFSIRHQLAFADYQEV 515 (809)
Q Consensus 497 ~~~---~~~lr~~L~~~Gf~Ev 515 (809)
.++ ...+.+.|..+||..|
T Consensus 221 ~~~~~~~~~i~~~~~~~gf~~v 242 (252)
T TIGR00268 221 SKLLNEAEEVRDKFKDIGFRKV 242 (252)
T ss_pred HHHHhhHHHHHHHHHHcCCCeE
Confidence 111 3568888999999877
No 149
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=26.48 E-value=1.1e+02 Score=35.32 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=46.6
Q ss_pred ccccccCCCEEEEEcCCCCeEEecCCe-eeee-------------cCCcEEEEeCCceeEecccccCccceeecCCceE
Q psy9573 271 FDLSKISGELNIRWGNIGETIKISNDL-IIKI-------------DKNIGIISDNFKIISLSGIINGFDASVTLNTKDI 335 (809)
Q Consensus 271 fD~dki~~~i~vr~a~~~e~~~~L~~~-~~~l-------------~~~~lvi~D~~~~lslagi~g~~~s~v~~~T~~i 335 (809)
.|.+++..++++|.-++|..+ +++.. ..+| .+..+|+++++++++++|+.-+....+++.+..+
T Consensus 350 ~~~~~~~~~l~lR~r~~Gd~~-~~g~~g~KklKk~f~d~kIP~~~R~~iPll~~~~~iv~v~g~~~~~~~~~~~~~~~~ 427 (436)
T PRK10660 350 VRPPRADEAVSVRFKAQGLLH-IVGRNHGRKLKKIWQELGVPPWLRDRTPLLFYGETLIAAAGVFVTQEGQAEEGENGV 427 (436)
T ss_pred ccccCCCCcEEEEecCCCcEE-ECCCCCCchHHHHHHHcCCCHHHhCCCCEEEECCEEEEEeCEEECcccccCCCCCce
Confidence 577777778999999999544 76653 2333 2577888989999999998666666776666554
No 150
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=25.46 E-value=1.1e+02 Score=26.78 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=29.6
Q ss_pred cCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEe
Q psy9573 404 NIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVI 452 (809)
Q Consensus 404 ~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~ 452 (809)
..++-++|.++-..+.+.+|.- ....++|..+||.....++.+...
T Consensus 25 ~~~kyR~Ir~~N~~f~~~i~~~---~g~~~~L~~~GF~~~~~~~~~vl~ 70 (87)
T PF09409_consen 25 NEEKYRRIRLSNKTFQEKILPV---PGARELLEALGFREVTDEEFLVLP 70 (87)
T ss_dssp T-CGGGEEETTSHHHHHHTTTS---TTHHHHHHHHT-EE---SSEEE--
T ss_pred CcccceEeecCcchHHHHhcCC---hhHHHHHHHCCCEEecCCCEEEEe
Confidence 4455689999999999888754 237789999999986544444433
No 151
>PLN02603 asparaginyl-tRNA synthetase
Probab=24.92 E-value=4.8e+02 Score=31.41 Aligned_cols=118 Identities=11% Similarity=0.004 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHH--H-hhhcC-----CCC--CCcEEeeCC--------CCccc----cccchhh
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSL--E-KDFSQ-----NIN--NYPIELLNP--------ISKKF----NTMRSTL 555 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~--~-~~~~~-----~~~--~~~i~L~NP--------is~e~----s~lR~SL 555 (809)
++...+|++|...||.||-|-.+++..- . +.|.- ... .....-.-| .+.++ ..|+.|-
T Consensus 231 ~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~ 310 (565)
T PLN02603 231 ALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSG 310 (565)
T ss_pred HHHHHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCc
Confidence 4677899999999999999999986531 1 11100 000 000000001 11222 2344332
Q ss_pred HHHHH-HHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHH
Q psy9573 556 IGSLV-NNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDL 634 (809)
Q Consensus 556 lpgLL-~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~l 634 (809)
.|. +.++. +. =++||+|.+|+.++.+ +..+..|.+++-+=++. .|+.|+-..+
T Consensus 311 --QL~~E~~~~----~l--~rVy~igp~FRaE~s~-----T~RHL~EF~mlE~E~af-------------~dl~d~m~~~ 364 (565)
T PLN02603 311 --QLNGETYAT----AL--SDVYTFGPTFRAENSN-----TSRHLAEFWMIEPELAF-------------ADLNDDMACA 364 (565)
T ss_pred --hHHHHHHHh----cc--cceEEEecceeCCCCC-----Cccccccceeeeeeeec-------------CCHHHHHHHH
Confidence 222 22222 22 3579999999875542 12355677777654442 4788888888
Q ss_pred HHHHHhc
Q psy9573 635 ENLFFPI 641 (809)
Q Consensus 635 e~ll~~l 641 (809)
|.++..+
T Consensus 365 E~~l~~~ 371 (565)
T PLN02603 365 TAYLQYV 371 (565)
T ss_pred HHHHHHH
Confidence 8777654
No 152
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=24.67 E-value=2.4e+02 Score=24.88 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=24.7
Q ss_pred ee-eeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCce
Q psy9573 31 ET-EKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSS 97 (809)
Q Consensus 31 EV-e~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~ 97 (809)
|| +++-+.+.+++|..+|+|.+++.+-.. + .-.+.|+.|+++..|..
T Consensus 24 ~V~~G~ik~G~~l~G~~iG~I~sIe~~~k~----v----------------~~A~~G~eVai~Ieg~~ 71 (81)
T PF14578_consen 24 EVLEGIIKPGYPLDGRKIGRIKSIEDNGKN----V----------------DEAKKGDEVAISIEGPT 71 (81)
T ss_dssp EEEEEEEETT-EECSSCEEEEEEEEETTEE----E----------------SEEETT-EEEEEEET--
T ss_pred EEeeeEEeCCCccCCEEEEEEEEeEECCcC----c----------------cccCCCCEEEEEEeCCc
Confidence 55 445566656666666666666655211 0 11246777888777754
No 153
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=23.73 E-value=1.7e+02 Score=24.47 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.1
Q ss_pred CccEEEEEECCEEEEEEE
Q psy9573 655 PNRSALIFKKTKNIGFIG 672 (809)
Q Consensus 655 PgrsA~I~~~g~~iG~iG 672 (809)
.+-||+++++++.||++-
T Consensus 26 ~~dsaEV~~g~EfiGvi~ 43 (63)
T PF11324_consen 26 KDDSAEVYIGDEFIGVIY 43 (63)
T ss_pred CCCceEEEeCCEEEEEEE
Confidence 467899999999888764
No 154
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=23.37 E-value=3e+02 Score=25.37 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=37.1
Q ss_pred ecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcc-----cCCCEEEEEecCcee
Q psy9573 37 TNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNI-----RVGLKVPCAIIGSSL 98 (809)
Q Consensus 37 ~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~-----~~g~~v~~a~~Ga~l 98 (809)
.++..-.++|+|+|..+. .|.|+ ||+|.+ ...||-.|.. ..|.+|.+-+--..|
T Consensus 18 ~lG~~~gk~V~G~I~hvv----~ddLY---IDfG~K-FhcVc~rp~~~~~~y~~G~rV~lrLkdlEL 76 (104)
T PF10246_consen 18 QLGDPEGKIVIGKIFHVV----DDDLY---IDFGGK-FHCVCKRPAVNGEKYVRGSRVRLRLKDLEL 76 (104)
T ss_pred hcCCccCCEEEEEEEEEe----cCceE---EEeCCc-eeEEEecccccccccccCCEEEEEECCHhh
Confidence 456666789999999884 44666 689975 7889977764 456666665543333
No 155
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=22.99 E-value=2e+02 Score=30.79 Aligned_cols=72 Identities=14% Similarity=0.288 Sum_probs=47.0
Q ss_pred EEEEE-EEeecHHHHHhCCCCCceEEEEeehHHHhccc-CCccccCCCCCCceeeEEEEEcCCC-----CHHHHHHHHHh
Q psy9573 666 KNIGF-IGEIHPILQQKYDLPLAPIFFEVDALELQKRQ-IPNYIQISKFPNVVRDIVFIFNKNI-----NLQDVMDTMFF 738 (809)
Q Consensus 666 ~~iG~-iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~-~~~~~~~skfP~~~RDlS~vv~~~~-----~~~~i~~~i~~ 738 (809)
+.+|| +|--.|...+.+++..|+|..=++ +.+.... ......+ ..|.+.=.|+|++.++. +.+++.++|..
T Consensus 55 ~~~G~K~G~ts~~~~~~~gv~~P~~g~l~~-~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~ 132 (262)
T PRK11342 55 RVVGRKVGLTHPKVQQQLGVDQPDFGTLFA-DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEW 132 (262)
T ss_pred ceEEEEecCCCHHHHHHhCCCCCCcccccc-hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhce
Confidence 45666 677789999999999998754333 2222111 1111111 35789999999999866 56677777764
Q ss_pred c
Q psy9573 739 E 739 (809)
Q Consensus 739 ~ 739 (809)
.
T Consensus 133 v 133 (262)
T PRK11342 133 V 133 (262)
T ss_pred E
Confidence 3
No 156
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.86 E-value=84 Score=33.18 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=35.9
Q ss_pred eEEEEEEEE---eeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEE
Q psy9573 45 IIIGKIINI---IKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCA 92 (809)
Q Consensus 45 vvvg~i~~~---~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a 92 (809)
.++|+|-.+ .-|-++++......+-|++.+-.|.|-+|+.+|++|+|-
T Consensus 221 ~~~GEvg~v~~~~e~~d~r~~~~~vagPg~~v~m~v~~~g~~~pGd~vvv~ 271 (293)
T COG4079 221 GVVGEVGEVGRLAEDVDARHMGDVVAGPGEEVVMAVEGNGEVEPGDRVVVK 271 (293)
T ss_pred hccceeEEecCchhhhhhhhhcceeeCCCceEEEEEccCCccCCCCEEEEe
Confidence 344544444 456677777666666677888999999999999999885
No 157
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.36 E-value=69 Score=24.50 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=15.6
Q ss_pred ccCCCEEEEEecCceec
Q psy9573 83 IRVGLKVPCAIIGSSLL 99 (809)
Q Consensus 83 ~~~g~~v~~a~~Ga~lp 99 (809)
+++|.+|.+|.-|..+|
T Consensus 2 l~pG~~V~CAVTg~~Ip 18 (42)
T PF09866_consen 2 LSPGSFVRCAVTGQPIP 18 (42)
T ss_pred ccCCCEEEEEeeCCccc
Confidence 57899999999999998
No 158
>COG4576 CcmL Carbon dioxide concentrating mechanism/carboxysome shell protein [Secondary metabolites biosynthesis, transport, and catabolism / Energy production and conversion]
Probab=21.87 E-value=3.8e+02 Score=23.81 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=28.5
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEec----CC-ceEEEEeCCCcc--cCCCEEEEEe
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDT----YK-NILDIVCNIPNI--RVGLKVPCAI 93 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~----g~-~~~~iv~ga~n~--~~g~~v~~a~ 93 (809)
.|.|.|.+..|||+-..+++.-|.. |+ .....|... ++ -.|.+|.++.
T Consensus 5 kVtG~vvsT~K~~~L~G~KLLlV~~id~~ge~~~~~eVA~D-svGAG~gE~VLvs~ 59 (89)
T COG4576 5 KVTGQVVSTVKHPGLAGDKLLLVEMIDAEGEPDGQCEVAID-SVGAGTGEWVLLSR 59 (89)
T ss_pred EEEEEEEEeecCCCcCccEEEEEEEeccCCCcccceEEEEe-cccCCcCcEEEEec
Confidence 5889999999999765555554444 22 111233222 33 3467887775
No 159
>KOG0556|consensus
Probab=21.63 E-value=1.6e+02 Score=33.61 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEE
Q psy9573 499 SLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFE 578 (809)
Q Consensus 499 ~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFE 578 (809)
.-...|++|...||.|+.|--+++.... + ..+.+++.-.... .+|-. -|.|.+..+---.. =|+||
T Consensus 234 vc~~FRe~L~~kgF~EIhTpKli~asSE---G---GanvF~v~Yfk~~--A~LAQ--SPQLyKQMaI~gdf----~rVye 299 (533)
T KOG0556|consen 234 VCFAFREYLRSKGFVEIHTPKLIGASSE---G---GANVFRVSYFKQK--AYLAQ--SPQLYKQMAICGDF----ERVYE 299 (533)
T ss_pred HHHHHHHHHHhcCcceecccccccccCC---C---CceeEEEEeccCc--chhhc--ChHHHHHHHHhcch----hheee
Confidence 4667899999999999999877765321 0 1234455433222 23333 37777776654322 47899
Q ss_pred EeeEEecCCC
Q psy9573 579 IANVYLHDKF 588 (809)
Q Consensus 579 iG~Vf~~~~~ 588 (809)
||.||+..+.
T Consensus 300 IGpVfRAEdS 309 (533)
T KOG0556|consen 300 IGPVFRAEDS 309 (533)
T ss_pred ecceeecccc
Confidence 9999986543
No 160
>PHA02131 hypothetical protein
Probab=20.32 E-value=1e+02 Score=24.95 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=37.5
Q ss_pred eeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCceeEEeecCCCcccccChHHHHHHHHHh
Q psy9573 110 NIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISIL 186 (809)
Q Consensus 110 ~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D~ileieitpNR~D~ls~~GiARelaa~ 186 (809)
|..-+||-..+|.-|- ||. .+|.++|.....+-+..-|+.-+||++||-
T Consensus 17 kvdmirgh~~~g~~c~------------imf----------------k~~~v~dctfk~dtaqfr~mek~ar~vaae 65 (70)
T PHA02131 17 KVDMIRGHYRFGISCW------------IMF----------------KNDQVIDCTFKNDTAQFRSMEKAARQVAAE 65 (70)
T ss_pred EEEEeccceecceEEE------------EEE----------------cCCCEEEeeecCcHHHHhhHHHHHHHHHHh
Confidence 4556788888888772 211 157788888888888899999999999984
No 161
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.24 E-value=4.9e+02 Score=30.22 Aligned_cols=111 Identities=18% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
...+.+|++|...||.||-|--+++...--. .+.+++.-- -.+ ..-+--|.|-.-+.-=. . =|+|
T Consensus 139 ~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg------~elF~v~yf-~~~---a~LtqS~QLyke~~~~a---l--~rVf 203 (435)
T COG0017 139 SILRAIREFFYENGFTEVHTPIITASATEGG------GELFKVDYF-DKE---AYLTQSPQLYKEALAAA---L--ERVF 203 (435)
T ss_pred HHHHHHHHHHHhCCcEEecCceEeccCCCCC------ceeEEEeec-Ccc---eEEecCHHHHHHHHHHH---h--CceE
Confidence 4577899999999999999988887643110 122233111 001 22233344433322111 1 4689
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|+|.+|+..+.. |.-+..|.+++-.=++. +++.|+-.++|.++..+
T Consensus 204 ~igP~FRAE~s~-----T~RHL~EF~~ld~Emaf-------------~~~~d~m~l~E~~i~~i 249 (435)
T COG0017 204 TIGPTFRAEKSN-----TRRHLSEFWMLDPEMAF-------------ADLNDVMDLAEELIKYL 249 (435)
T ss_pred EecCceecCCCC-----CcchhhhHheecceecc-------------CcHHHHHHHHHHHHHHH
Confidence 999999875432 12244566665544443 35677777777766553
Done!