Query psy9573
Match_columns 809
No_of_seqs 280 out of 1625
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:06:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pco_B Phenylalanyl-tRNA synth 100.0 5E-206 2E-210 1828.1 71.8 788 1-809 1-795 (795)
2 2rhq_B Phenylalanyl-tRNA synth 100.0 7E-196 2E-200 1747.4 81.1 779 1-807 1-795 (795)
3 1b7y_B Phers, protein (phenyla 100.0 3E-195 1E-199 1733.4 75.4 769 1-809 1-781 (785)
4 3l4g_B Phenylalanyl-tRNA synth 100.0 6E-105 2E-109 933.2 46.2 480 158-699 59-589 (589)
5 2cxi_A Phenylalanyl-tRNA synth 100.0 1.4E-62 4.8E-67 538.7 19.6 283 141-476 24-348 (348)
6 3cmq_A Phenylalanyl-tRNA synth 100.0 9.3E-50 3.2E-54 446.3 28.0 309 476-809 27-415 (415)
7 2du7_A O-phosphoseryl-tRNA syn 100.0 3.8E-47 1.3E-51 430.3 18.8 288 470-784 36-432 (549)
8 2odr_B Phosphoseryl-tRNA synth 100.0 1.8E-46 6.2E-51 426.0 20.7 282 479-784 50-439 (648)
9 2odr_A Phosphoseryl-tRNA synth 100.0 1.9E-46 6.4E-51 426.0 20.8 283 478-784 49-439 (665)
10 2odr_D Phosphoseryl-tRNA synth 100.0 2E-46 6.8E-51 426.0 19.1 284 478-785 49-440 (685)
11 2odr_C Phosphoseryl-tRNA synth 100.0 5.6E-46 1.9E-50 423.2 19.1 282 478-783 49-438 (701)
12 3ica_A Phenylalanyl-tRNA synth 100.0 5E-45 1.7E-49 375.6 18.5 203 496-699 6-213 (213)
13 3ig2_A Phenylalanyl-tRNA synth 100.0 5.2E-45 1.8E-49 375.4 14.9 204 495-699 5-213 (213)
14 2du3_A O-phosphoseryl-tRNA syn 100.0 1.2E-42 4E-47 394.5 20.7 289 455-776 11-418 (534)
15 2rhq_A Phenylalanyl-tRNA synth 100.0 2.9E-38 9.9E-43 340.2 21.4 214 462-700 21-264 (294)
16 3bu2_A Putative tRNA-binding p 100.0 4E-37 1.4E-41 307.1 15.0 127 18-152 69-197 (199)
17 3qtc_A Pyrrolysyl-tRNA synthet 100.0 4.4E-29 1.5E-33 268.5 21.9 202 489-715 72-282 (290)
18 1b7y_A Phers, protein (phenyla 100.0 1.5E-28 5.3E-33 268.6 21.8 202 477-700 84-324 (350)
19 3l4g_A Phenylalanyl-tRNA synth 99.9 6E-27 2.1E-31 265.0 22.1 208 471-700 207-466 (508)
20 3pco_A Phenylalanyl-tRNA synth 99.9 4.2E-27 1.5E-31 254.3 14.1 198 476-700 89-304 (327)
21 2e8g_A Hypothetical protein PH 99.9 1E-27 3.5E-32 244.6 7.4 127 5-148 85-226 (241)
22 3dsq_A Pyrrolysyl-tRNA synthet 99.9 1.3E-24 4.5E-29 232.8 17.9 207 490-713 67-277 (288)
23 1pyb_A Methionyl-tRNA syntheta 99.9 4E-26 1.4E-30 209.2 4.6 95 44-151 16-110 (111)
24 2cwp_A Metrs related protein; 99.9 1.5E-25 5.1E-30 205.5 5.8 95 44-151 16-111 (112)
25 1mkh_A Metrs;, C-terminal doma 99.9 3.9E-25 1.3E-29 201.3 5.6 93 44-151 12-106 (107)
26 1gd7_A CSAA protein; oligonucl 99.9 5.2E-25 1.8E-29 201.0 6.0 93 45-151 12-108 (109)
27 2nzh_A Protein CSAA; beta barr 99.9 6.3E-25 2.2E-29 201.7 3.3 94 44-151 14-112 (113)
28 2q2i_A AGR_C_4014P, secretion 99.9 1.7E-24 5.9E-29 199.7 5.0 94 44-151 17-115 (116)
29 2q2h_A AGR_C_4014P, secretion 99.9 8.3E-24 2.9E-28 198.5 5.1 93 45-151 33-130 (131)
30 1pxf_A Hypothetical protein YG 99.9 2.6E-22 9E-27 183.7 5.4 93 45-151 14-109 (111)
31 1ntg_A Tyrrs, tyrosyl-tRNA syn 99.8 2.2E-21 7.7E-26 190.3 9.0 90 44-151 11-109 (172)
32 1fl0_A Endothelial-monocyte ac 99.8 8.4E-22 2.9E-26 192.9 3.9 95 44-152 7-103 (171)
33 3g48_A Chaperone CSAA; structu 99.8 3.9E-21 1.3E-25 175.9 2.8 95 45-151 15-111 (112)
34 3ers_X TRNA-binding protein YG 99.8 2.3E-20 7.7E-25 172.3 6.8 93 45-151 14-109 (118)
35 1rqg_A Methionyl-tRNA syntheta 99.7 4.5E-18 1.5E-22 203.8 0.0 93 44-151 627-721 (722)
36 3hj7_A TRNA(Ile)-lysidine synt 97.3 0.00029 1E-08 67.0 6.7 68 269-336 42-125 (142)
37 1nnh_A Asparaginyl-tRNA synthe 97.3 0.0086 2.9E-07 63.8 18.2 191 497-715 19-287 (294)
38 3rac_A Histidine-tRNA ligase; 96.8 0.006 2.1E-07 67.3 11.8 138 496-643 40-179 (373)
39 3net_A Histidyl-tRNA synthetas 96.7 0.0046 1.6E-07 70.3 10.4 154 474-643 5-177 (465)
40 3od1_A ATP phosphoribosyltrans 96.6 0.01 3.4E-07 66.1 12.4 132 496-643 27-158 (400)
41 1z7m_A ATP phosphoribosyltrans 96.3 0.012 4E-07 64.2 10.0 130 496-643 39-172 (344)
42 1htt_A Histidyl-tRNA synthetas 96.2 0.036 1.2E-06 61.8 13.8 132 496-643 21-156 (423)
43 4e51_A Histidine--tRNA ligase; 96.0 0.034 1.2E-06 63.1 12.1 133 496-643 49-185 (467)
44 1h4v_B Histidyl-tRNA synthetas 95.9 0.056 1.9E-06 60.3 13.5 132 496-643 20-156 (421)
45 1wu7_A Histidyl-tRNA synthetas 95.9 0.031 1.1E-06 62.7 11.3 132 496-644 23-155 (434)
46 3lc0_A Histidyl-tRNA synthetas 95.7 0.032 1.1E-06 63.1 10.6 132 496-643 46-178 (456)
47 1qe0_A Histidyl-tRNA synthetas 95.4 0.029 9.9E-07 62.5 8.7 133 496-644 19-157 (420)
48 4g84_A Histidine--tRNA ligase, 94.4 0.23 7.9E-06 55.9 12.4 109 496-612 31-139 (464)
49 4g85_A Histidine-tRNA ligase, 94.0 0.22 7.5E-06 57.1 11.5 108 496-612 84-192 (517)
50 2i4l_A Proline-tRNA ligase; al 93.4 0.17 5.8E-06 57.1 8.8 136 496-645 70-212 (458)
51 3a2k_A TRNA(Ile)-lysidine synt 92.6 0.12 4.1E-06 58.5 6.1 67 270-336 374-455 (464)
52 1usy_A ATP phosphoribosyltrans 92.5 0.16 5.6E-06 53.3 6.6 114 499-643 6-122 (275)
53 2j3l_A Prolyl-tRNA synthetase; 92.3 0.37 1.3E-05 55.9 9.9 139 496-646 50-193 (572)
54 1wyd_A Hypothetical aspartyl-t 91.3 0.92 3.1E-05 50.7 11.4 112 497-641 138-249 (429)
55 3a32_A Probable threonyl-tRNA 91.3 0.84 2.9E-05 51.6 11.3 134 496-643 52-195 (471)
56 1x54_A Asparaginyl-tRNA synthe 91.2 0.97 3.3E-05 50.6 11.3 112 497-641 139-250 (434)
57 1nyr_A Threonyl-tRNA synthetas 90.8 0.4 1.4E-05 56.5 8.1 135 496-643 274-415 (645)
58 2dq3_A Seryl-tRNA synthetase; 90.4 0.76 2.6E-05 51.3 9.5 139 496-646 175-318 (425)
59 3a5y_A GENX, putative lysyl-tR 89.2 0.91 3.1E-05 49.2 8.7 114 498-641 41-158 (345)
60 1evl_A Threonyl-tRNA synthetas 88.5 0.72 2.5E-05 50.9 7.5 135 496-643 33-172 (401)
61 1n9w_A Aspartyl-tRNA synthetas 88.3 1.5 5E-05 49.0 9.8 113 497-641 129-241 (422)
62 3a74_A Lysyl-tRNA synthetase; 88.1 2.9 9.9E-05 47.5 12.2 112 498-641 179-291 (493)
63 1e1o_A Lysyl-tRNA synthetase, 87.2 3.3 0.00011 47.2 12.0 111 498-641 188-300 (504)
64 1nj8_A Proline-tRNA synthetase 87.0 1 3.5E-05 50.8 7.6 139 496-645 41-189 (459)
65 1ses_A Seryl-tRNA synthetase; 87.0 2 7E-05 47.8 10.0 140 496-645 169-313 (421)
66 3l4g_B Phenylalanyl-tRNA synth 86.5 0.65 2.2E-05 54.1 5.8 67 409-475 2-89 (589)
67 2dq0_A Seryl-tRNA synthetase; 85.6 2 6.7E-05 48.4 9.0 139 496-646 196-339 (455)
68 2xgt_A Asparaginyl-tRNA synthe 85.1 2.9 0.0001 46.7 10.1 110 498-641 137-247 (435)
69 3bju_A Lysyl-tRNA synthetase; 84.7 3.9 0.00013 46.7 11.0 113 498-641 181-293 (521)
70 1qf6_A THRRS, threonyl-tRNA sy 84.6 1.2 4E-05 52.5 6.8 135 496-643 274-413 (642)
71 4ex5_A Lysine--tRNA ligase; st 84.3 4.2 0.00014 46.5 11.0 113 498-641 209-321 (529)
72 1nj1_A PROR, proline-tRNA synt 84.3 2.2 7.4E-05 48.7 8.7 191 496-699 74-293 (501)
73 3vbb_A Seryl-tRNA synthetase, 84.0 5.7 0.0002 45.2 11.9 144 496-646 204-360 (522)
74 3err_A Fusion protein of micro 83.8 3.2 0.00011 47.6 9.8 141 496-646 278-423 (536)
75 1hc7_A Prolyl-tRNA synthetase; 82.9 2.2 7.6E-05 48.2 8.0 191 496-699 47-266 (477)
76 2cxi_A Phenylalanyl-tRNA synth 82.4 0.68 2.3E-05 50.3 3.3 70 409-478 2-77 (348)
77 3lss_A Seryl-tRNA synthetase; 82.0 5.5 0.00019 45.0 10.6 142 496-646 211-358 (484)
78 3uh0_A Threonyl-tRNA synthetas 78.3 5.1 0.00017 45.1 8.9 138 496-644 67-212 (460)
79 3i7f_A Aspartyl-tRNA synthetas 77.8 7.8 0.00027 44.4 10.2 112 498-640 249-360 (548)
80 3nem_A Aspartyl-tRNA synthetas 77.8 7.1 0.00024 43.6 9.7 112 498-641 142-254 (438)
81 1l0w_A Aspartyl-tRNA synthetas 77.7 13 0.00044 43.0 12.2 112 498-641 149-261 (580)
82 3ial_A Prolyl-tRNA synthetase; 77.0 4.1 0.00014 46.5 7.7 177 496-685 58-255 (518)
83 1eov_A ASPRS, aspartyl-tRNA sy 76.1 11 0.00037 42.7 10.8 112 498-641 183-295 (487)
84 1c0a_A Aspartyl tRNA synthetas 76.0 15 0.00052 42.5 12.2 112 498-641 143-255 (585)
85 4ah6_A Aspartate--tRNA ligase, 74.3 16 0.00054 42.5 11.6 111 498-641 153-265 (617)
86 3m4p_A Ehasnrs, asparaginyl-tR 72.5 15 0.00051 41.2 10.6 110 498-641 161-271 (456)
87 1wle_A Seryl-tRNA synthetase; 71.8 28 0.00096 39.4 12.7 142 496-646 222-370 (501)
88 3qne_A Seryl-tRNA synthetase, 66.5 9.2 0.00031 43.2 7.2 137 497-646 189-335 (485)
89 1ni5_A Putative cell cycle pro 64.4 6.2 0.00021 43.9 5.4 62 271-333 348-423 (433)
90 4hvc_A Bifunctional glutamate/ 62.3 10 0.00036 43.2 6.8 139 496-645 64-212 (519)
91 1ati_A Glycyl-tRNA synthetase; 57.9 31 0.001 39.1 9.6 83 548-644 182-270 (505)
92 2qt7_A Receptor-type tyrosine- 47.8 25 0.00084 30.3 5.0 38 768-807 45-82 (91)
93 1whz_A Hypothetical protein; a 41.9 40 0.0014 27.1 5.3 50 425-476 4-62 (70)
94 2zt5_A Glycyl-tRNA synthetase; 39.6 34 0.0012 40.4 6.4 58 545-607 236-297 (693)
95 2qw7_A Carbon dioxide concentr 37.5 66 0.0023 28.7 6.3 49 45-93 5-59 (111)
96 2hd3_A Ethanolamine utilizatio 31.2 76 0.0026 28.0 5.6 49 45-93 5-59 (103)
97 3mf2_A BLL0957 protein; aminoa 30.9 51 0.0018 35.4 5.4 175 497-685 68-288 (346)
98 4hti_A Receptor-type tyrosine- 28.2 74 0.0025 27.8 4.9 37 769-807 53-89 (99)
99 2cja_A Seryl-tRNA synthetase; 27.6 27 0.00093 39.7 2.7 138 497-644 235-407 (522)
100 4hlb_A Uncharacterized protein 26.5 84 0.0029 26.3 4.7 71 719-805 15-86 (115)
101 1x9z_A DNA mismatch repair pro 24.9 72 0.0024 30.9 4.9 59 408-474 60-119 (188)
102 2rcf_A Unidentified carboxysom 24.0 99 0.0034 26.6 4.9 49 45-93 5-54 (91)
103 2z1c_A Hydrogenase expression/ 21.4 1.5E+02 0.0053 24.4 5.4 40 47-93 6-46 (75)
104 3d3r_A Hydrogenase assembly ch 21.0 1.7E+02 0.006 25.7 6.0 42 47-93 27-70 (103)
No 1
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=5.4e-206 Score=1828.08 Aligned_cols=788 Identities=33% Similarity=0.592 Sum_probs=748.5
Q ss_pred CccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeC
Q psy9573 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCN 79 (809)
Q Consensus 1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~g 79 (809)
|+||++|||||||+++|++||+++|||+|+|||+|++++..+++++||+|++|++|||||||++|+||+|+ +++|||||
T Consensus 1 M~vs~~WL~e~v~~~~~~~el~~~Lt~~GlEVE~v~~~~~~~~~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~g 80 (795)
T 3pco_B 1 MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCG 80 (795)
T ss_dssp CEEEHHHHHTTCCCSCCTTHHHHHHHTTTCEEEEEEESSCCCCCEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECC
T ss_pred CcCCHHHHHHHcCCCCCHHHHHHHHhhcCcceeEEEecCcCCCCeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCc
Q psy9573 80 IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNN 159 (809)
Q Consensus 80 a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D 159 (809)
|+|+++|++||||++||+||+ |++||++|+||++|+|||||++||||+++++||++||+++++|+++.+||+|+|
T Consensus 81 a~n~~~g~~v~va~~Ga~l~~-----~~~ik~~k~rG~~S~GMlcs~~elgl~~~~~gi~~l~~~~~~G~~~~~~l~l~D 155 (795)
T 3pco_B 81 APNCRQGLRVAVATIGAVLPG-----DFKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDD 155 (795)
T ss_dssp CSSCCTTCEEEEECTTCBCTT-----SCBCCCEESSSSEESSEECCSGGGTSCCCCSSCCEECSSCCTTSBHHHHTCCCC
T ss_pred CccccCCCEEEEEecCcCcCC-----CceEcccccCCeecCcEecchhhcCCCCCCCeEEECCccccCCCCHHHHhCCCc
Confidence 999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEecccccccceEEEEEecccCCCCCHHHHH
Q psy9573 160 LKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWMK 239 (809)
Q Consensus 160 ~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~lq 239 (809)
++|||++||||||||||+|||||+||+++.+++.|.+..........++|.+++++.||||++++|+||++..+||+|||
T Consensus 156 ~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~~~~~~~v~v~~~~~cp~y~~~vi~~V~~~~~SP~wlq 235 (795)
T 3pco_B 156 NTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMK 235 (795)
T ss_dssp EEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCCSCCCCCCCCSCTTTCSEEEEEEEESCCTTCCCCTHHH
T ss_pred eeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccCCCcceEEEecCcccCceEEEEEEEcccCCCCCHHHHH
Confidence 99999999999999999999999999999999999876443333456788888899999999999999999546999999
Q ss_pred HHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecCCcEEEEeCCceeEecc
Q psy9573 240 IRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSG 319 (809)
Q Consensus 240 ~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D~~~~lslag 319 (809)
+||+++|+||||++|||||||||++|||+|+||+|||+++|+||.++++|+|++||+++++|+++++||+|+++++|+||
T Consensus 236 ~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g~i~vr~a~~ge~~~~Ld~~e~~l~~~~lvi~D~~~~~~lag 315 (795)
T 3pco_B 236 EKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGG 315 (795)
T ss_dssp HHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCSCCEEECCCSSCCEEETTTEEECCCTTCCEEECSSSEEEETT
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCCCeEEEEcCCCCEEEecCCceeecCCCcEEEEeCCceEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCccccccceE
Q psy9573 320 IINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQID 399 (809)
Q Consensus 320 i~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~~~~ 399 (809)
||||++|+|+++|++||||+|+|+|.+||+|||+|||+||||||||||+||+.+..|++||++||.++|||+ ++.+.
T Consensus 316 i~gg~~s~v~~~T~~i~lE~a~f~p~~Ir~tar~~~l~tdas~RfERGvDp~~~~~al~ra~~Li~e~~gg~---v~~v~ 392 (795)
T 3pco_B 316 IFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGE---AGPVI 392 (795)
T ss_dssp TCCBSTTBCCTTCCCEEEEEEECCGGGSTTHHHHTTCCCHHHHHHHHCCCTTCHHHHHHHHHHHHHTTSSCE---EEEEE
T ss_pred ccCCcceeeeCCCCeEEEEEeccCHHHHHHHHHHhCCCchHhhhhhcCCCHHHHHHHHHHHHHHHHHHhCCe---EEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 77666
Q ss_pred eeeec--CCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhhccC
Q psy9573 400 DQIIN--IPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFE 477 (809)
Q Consensus 400 ~~~~~--~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGyd 477 (809)
+.+.. ++.++.|.++.++|+++||++++.++|.++|++|||+++..++.|.|+||+||+||++++||||||||+||||
T Consensus 393 ~~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DliEEVaRiyGyd 472 (795)
T 3pco_B 393 DITNEATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYN 472 (795)
T ss_dssp EEECTTTSCCCCEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEETTEEEEECCSSCSSCSSHHHHHHHHHHHHCGG
T ss_pred EeCCccCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCCceEEEECCCCccccCCccHHHHHHHHHhCcc
Confidence 55543 5667899999999999999999999999999999999987667899999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHH
Q psy9573 478 NIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIG 557 (809)
Q Consensus 478 nip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlp 557 (809)
|||+++|......+..+..+++.+++|+.|+++||+|++||||++++.++.|.+. .+.++|+||+|+|+++||+||||
T Consensus 473 nIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~--~~~v~l~NPis~e~svmRtsLlp 550 (795)
T 3pco_B 473 NIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG--VEALLLPSPISVEMSAMRLSLWT 550 (795)
T ss_dssp GSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS--CCCCBCSSCSCSTTCEECSSSHH
T ss_pred cCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC--CCeEEEcCCCchhHHHHHHHHHH
Confidence 9999999876555556666777999999999999999999999999998888755 57899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHH
Q psy9573 558 SLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENL 637 (809)
Q Consensus 558 gLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~l 637 (809)
|||+++++|++|+++++++||+|+||.+++.. ..++.|..+||++++|...+.+|..+.+.+|||++||+|+++
T Consensus 551 gLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~------~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~l 624 (795)
T 3pco_B 551 GLLATVVYNQNRQQNRVRIFESGLRFVPDTQA------PLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV 624 (795)
T ss_dssp HHHHHHHHHHTSSCCCCEEEEEEEEEEECTTS------STTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccEEEeeeEEecCCCc------ccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999976532 236789999999999999999999999999999999999999
Q ss_pred HHhcCC----eeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcccCCccccCCCCC
Q psy9573 638 FFPIKL----NFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKFP 713 (809)
Q Consensus 638 l~~lgi----~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~~~~~~~skfP 713 (809)
|..+|+ +|++.++++|||||||.|+++|+.||++|+|||+++++|||+.|+|+|||||+.|.+...++|+|+|+||
T Consensus 625 l~~lg~~~~~~~~~~~~~~~hPGrsA~I~~~g~~iG~~GelHP~v~~~~dl~~~v~~~Eldld~L~~~~~~~~~~~skfP 704 (795)
T 3pco_B 625 LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRFP 704 (795)
T ss_dssp TTTSSCCSSCCEECCCCTTEEEEEEEEECTTTSCCEEEEEECTTTTTTTCCCSCEEEEEEEGGGSSBCCCCCCCCCCCSC
T ss_pred HHHcCCCcceEEEECCCCCCCCCCEEEEEECCEEEEEEEEECHHHHHHcCCCCCEEEEEEEHHHhhcccCCCcCCCCCCC
Confidence 999984 4677788999999999999999999999999999999999999999999999999876678999999999
Q ss_pred CceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHHH
Q psy9573 714 NVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAIN 793 (809)
Q Consensus 714 ~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~~ 793 (809)
+++|||||+||++++++++.++|++.+++ +|++|+|||+|+|+++++||||+|||++||+++|||||+||+++|+
T Consensus 705 ~v~RDlA~vv~~~v~~~~i~~~ir~~~~~-----ll~~V~lfDvY~g~~i~~gkKSla~~l~~r~~~rTLtdeev~~~~~ 779 (795)
T 3pco_B 705 ANRRDIAVVVAENVPAADILSECKKVGVN-----QVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVA 779 (795)
T ss_dssp CEEEEEEEEEETTSCHHHHHTTTSSTTTT-----TEEEEEECCCBCSTTSCTTEEEEEEEEEECCSSCCCCHHHHHHHHH
T ss_pred CcceeEEEEeCCCCCHHHHHHHHHHhCcc-----eEEEEEEEEEecCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccCC
Q psy9573 794 ALINSVCKNFNAKLRN 809 (809)
Q Consensus 794 ~ii~~L~~~~~a~lR~ 809 (809)
+|++.|+++|||+||+
T Consensus 780 ki~~~l~~~~ga~LR~ 795 (795)
T 3pco_B 780 KCVEALKERFQASLRD 795 (795)
T ss_dssp HHHHHTTTTTCCBCCC
T ss_pred HHHHHHHHHhCCEeCC
Confidence 9999999999999995
No 2
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=6.6e-196 Score=1747.39 Aligned_cols=779 Identities=28% Similarity=0.456 Sum_probs=727.0
Q ss_pred CccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeC
Q psy9573 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCN 79 (809)
Q Consensus 1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~g 79 (809)
|+||++|||||||+++|++||+++|||+|+|||+|+.++..++++|||+|++|+|| ||.+|+||+|+ +++|||||
T Consensus 1 M~~s~~WL~e~v~~~~~~~~l~~~lt~~GlEVe~v~~~~~~~~~~vvg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~g 76 (795)
T 2rhq_B 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKG----SGNICQVDIGEEEPVQIVCG 76 (795)
T ss_dssp CEEEHHHHTTTBCCSSCHHHHHHHHHHTTCEEEEEEETTTTCEEEEEEEEEEEECS----SSCEEEEECSSSSCEEEECC
T ss_pred CcCCHHHHHHHhCCCCCHHHHHHHHHhcCccceEEEecccCCCCeEEEEEEEEEEE----eEEEEEEEcCCCeEEEEEeC
Confidence 99999999999998899999999999999999999999989999999999999999 99999999998 68999999
Q ss_pred CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCC------CCceEEcCCCCCCCCchhh
Q psy9573 80 IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNK------NKYLFELPEDAPIGKNFYD 153 (809)
Q Consensus 80 a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~------~~GI~~l~~~~~~G~~~~~ 153 (809)
|+|+++|++|+||++||+||| |++||++|+||++|+|||||++||||+++ ++||++||+++++|+++.+
T Consensus 77 a~n~~~g~~v~va~~Ga~lpg-----~~~ik~~klrG~~S~GMlcs~~elGl~~~~~~~~~~~gi~~l~~~~~~G~~~~~ 151 (795)
T 2rhq_B 77 APNVDAGQHVIVAKVGGRLPG-----GIKIKRAKLRGERSEGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALT 151 (795)
T ss_dssp CTTCCTTCEEEEEEEEEEETT-----TEECCCEEETTEEECSEECCSGGGTCCGGGSCHHHHTSCCBCSSCCCTTSBHHH
T ss_pred CchhhCCCEEEEEecCcCcCC-----CceEcceeecCccccceeeeHHHcCCCcccccccCCCeEEECCCCCcCCCchhh
Confidence 999999999999999999998 89999999999999999999999999998 8999999999999999999
Q ss_pred hcccCceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccC--CCCCcceeEEecccccccceEEEEEecccCC
Q psy9573 154 YYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITL--PNYKEILPVKISAIDLCGRFSGRIIRGINPK 231 (809)
Q Consensus 154 ~~~l~D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~--~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~ 231 (809)
||+|+|++|||++|||||||||++||||||||+++.+++.|.+.... ......++|.+++++.||||+|++|+||++
T Consensus 152 ~l~l~D~viei~iTpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~v~v~~~~~cp~y~~~~i~~v~~- 230 (795)
T 2rhq_B 152 ALYLNDQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSI- 230 (795)
T ss_dssp HTTCSCEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCC-
T ss_pred ccCCCceEEEEeCCCChHHHhHHHHHHHHHHHHhCCCCCCCCccccccccCCCCceEEEecCcccCceEEEEEEECCCC-
Confidence 99999999999999999999999999999999999999988764221 122455889999999999999999999999
Q ss_pred CCCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccC-CCEEEEEcCCCCeEEecCCeeeeecCCcEEEEe
Q psy9573 232 ALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKIS-GELNIRWGNIGETIKISNDLIIKIDKNIGIISD 310 (809)
Q Consensus 232 ~~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~-~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D 310 (809)
++||+|||+||+++|+||||++|||||||||++|||+|+||+|||+ ++|+||.+++||+|++||+++++|+++++||+|
T Consensus 231 ~~sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~ge~~~~L~~~~~~l~~~~lvi~D 310 (795)
T 2rhq_B 231 EPSPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEETMTTLDNNERKLVDTDIVISN 310 (795)
T ss_dssp CCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTCEEEBTTSCEEECCTTCEEEES
T ss_pred CCCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCCCEEEecCCceeecCCCcEEEEE
Confidence 8999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred CCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCC
Q psy9573 311 NFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGT 390 (809)
Q Consensus 311 ~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg 390 (809)
+++++|+||||||++|+|+++|||||||+|+|+|.+||+|||+|||+||||||||||+||+.+..|+++|++||.++|||
T Consensus 311 ~~~~~~~agi~gg~~s~v~~~T~~i~le~a~f~p~~Ir~tar~~~l~tdas~RfERGvD~~~~~~al~~~~~ll~~~~gg 390 (795)
T 2rhq_B 311 GQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVDEAVDRACYLLQELASG 390 (795)
T ss_dssp SSSEEEETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHTCCCGGGHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEecceeCCCceeeeCCCCEEEEEEEeeCHHHHHHHHHHcCCCchhhhhhccCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceEeeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhh
Q psy9573 391 SSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEI 470 (809)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEI 470 (809)
+ +++++.+.++.+..++.|.++.++|+++||++++.++|.++|++|||+++.+++.|.|+||+||+||++++||||||
T Consensus 391 ~--v~~~v~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~~~~~~~V~vPs~R~Di~~e~DliEEV 468 (795)
T 2rhq_B 391 E--VLQDRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEV 468 (795)
T ss_dssp E--ECBCCEEEECCCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEEEETTCTTCCSHHHHHHHH
T ss_pred c--cccceEEccCCCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCCceEEEECCCCccccCCccHHHHHH
Confidence 8 33677777765566779999999999999999999999999999999997666789999999999999999999999
Q ss_pred hhhhccCCCCCCCCC-ccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCC-cEEeeCCCCccc
Q psy9573 471 IRIYGFENIPISLPI-TVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNY-PIELLNPISKKF 548 (809)
Q Consensus 471 aR~yGydnip~~~p~-~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~i~L~NPis~e~ 548 (809)
||+|||||||+++|. .....+..++.+++.+++|+.|+++||+|++||||++++..+.|++. .+ .++|.||+|+|+
T Consensus 469 aRiyGydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~--~~~~v~L~NPis~e~ 546 (795)
T 2rhq_B 469 ARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQ--ERPTISLLMPMSEAH 546 (795)
T ss_dssp HHHHCTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSS--CCCCEECSSCSCTTS
T ss_pred HHHhCcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCC--CCceEEEcCCCchhh
Confidence 999999999999997 44455667778889999999999999999999999999876555443 56 699999999999
Q ss_pred cccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHH
Q psy9573 549 NTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYF 628 (809)
Q Consensus 549 s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~ 628 (809)
++|||||+||||+++++|++|+++++++||+|+||++++.. .++ .|..+++++++|...+.+|+.+.+.+|||
T Consensus 547 svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~------~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~ 619 (795)
T 2rhq_B 547 ATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEG------ELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFF 619 (795)
T ss_dssp SEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTT------SCC-EEEEEEEEEEESEEEEEGGGTEEEECCHH
T ss_pred hhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcc------cCc-chhhEEEEEEEeccccccccCCCCCCCHH
Confidence 99999999999999999999999999999999999865321 112 78999999999988889998777889999
Q ss_pred HHHHHHHHHHHhcCC--eeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcccC--C
Q psy9573 629 DLKNDLENLFFPIKL--NFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQI--P 704 (809)
Q Consensus 629 dlKg~le~ll~~lgi--~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~--~ 704 (809)
|+||+|+++++.+|+ .|++..+|+|||||+|+|+++|+.||++|+|||+++++|||+.+ |+|||+|++|..... .
T Consensus 620 dlKg~le~ll~~lG~~~~~~~~~~p~~hPGr~a~I~~~g~~IG~~G~lHP~Vl~~~~l~~~-~afEL~le~L~~~~~~~~ 698 (795)
T 2rhq_B 620 IAKGVVDRVAEKLNLEFSYKAGKIEGLHPGRTAIVSLEGQDIGFIGELHPQVAADNDLKRT-YVFELNYDAMMQVAVGYI 698 (795)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCTTEEEEEEEEEEETTEEEEEEEEECHHHHHHTTCCSE-EEEEEEHHHHTTCCCCSC
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCcccCCcEEEEEECCEEEEEEEEECHHHHHHcCCCCc-EEEEEEHHHHhhhcccCC
Confidence 999999999999995 67777889999999999999999999999999999999999999 999999999985332 5
Q ss_pred ccccCCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCC
Q psy9573 705 NYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLK 784 (809)
Q Consensus 705 ~~~~~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt 784 (809)
+|+|+|+||+++|||||+||+++++++|.++|++.+++ +|++|++||+|+|+++++||||+|||++||+.+||||
T Consensus 699 ~~~~~skfP~v~RDlA~vv~~~v~~~~i~~~i~~~~~~-----ll~~v~lFDvY~G~~~~~gkKSla~~l~~r~~~rTLt 773 (795)
T 2rhq_B 699 NYEQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGED-----ILQSTLVFDVYEGEHLEKGKKSVAIRLNYLDTEDTLT 773 (795)
T ss_dssp CCCCCCSSCCEEEEEECBEETTSCHHHHHHHHHHHCGG-----GEEEEEEEEEEC-----CCEEEEEEEEEECCSSSCCC
T ss_pred ccCCCCCCCCcceeEEEEECCCCCHHHHHHHHHHhCcc-----ceeeeEEEEEecCCCCCCCcEEEEEEEEEECCCCCCC
Confidence 89999999999999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccc
Q psy9573 785 NNIINNAINALINSVCKNFNAKL 807 (809)
Q Consensus 785 ~~ev~~~~~~ii~~L~~~~~a~l 807 (809)
|+||++++++|+++|+++ ||+|
T Consensus 774 d~ei~~~~~~i~~~l~~~-ga~L 795 (795)
T 2rhq_B 774 DERVSKIHDKILEALQAE-GATI 795 (795)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCBC
T ss_pred HHHHHHHHHHHHHHHHHc-CCCC
Confidence 999999999999999999 9986
No 3
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=2.9e-195 Score=1733.40 Aligned_cols=769 Identities=27% Similarity=0.440 Sum_probs=717.0
Q ss_pred CccCHHHHhhccCCCC-CHHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeC
Q psy9573 1 MQIPENWLRTIINPKL-SSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCN 79 (809)
Q Consensus 1 M~is~~WL~e~v~~~~-~~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~g 79 (809)
|+||++|||||||. + |++||+++|||+|+|||+|+.++..+++++||+|++|+||||| ||.+|+||+| +++|||||
T Consensus 1 M~~s~~WL~e~v~~-~~~~~el~~~lt~~GlEVe~v~~~~~~~~~~~vg~V~~~~~hp~a-kL~v~~Vd~G-~~~qIv~G 77 (785)
T 1b7y_B 1 MRVPFSWLKAYVPE-LESPEVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPGT-RLKRLVLDAG-RTVEVVSG 77 (785)
T ss_dssp CEEEHHHHTTTSTT-CCCHHHHHHHHHHHTCCCCEEEECCCCCTTEEEEEEEEEEECTTS-SCEEEEEESS-SEEEEEEC
T ss_pred CcCCHHHHHHHhCC-CCCHHHHHHHHHhcCcceeEEEecCcCCCCeEEEEEEEEEECCCC-eEEEEEEecC-CEEEEEeC
Confidence 99999999999993 6 9999999999999999999999999999999999999999999 9999999999 88999999
Q ss_pred CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCceEEcCCCC-CCCCchhhhcccC
Q psy9573 80 IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDA-PIGKNFYDYYKFN 158 (809)
Q Consensus 80 a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~GI~~l~~~~-~~G~~~~~~~~l~ 158 (809)
|+|+++|++||+|++|++||+. +++||++|+||++|+|||||++||||+++++||++||+++ ++|+++.+||+ +
T Consensus 78 a~n~~~g~~v~~a~~G~~l~~~----~~~ik~~klrGv~S~GMlcs~~eLgl~~~~~gi~~l~~~~~~~G~~~~~~l~-~ 152 (785)
T 1b7y_B 78 AENARKGIGVALALPGTELPGL----GQKVGERVIQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWP-E 152 (785)
T ss_dssp CTTCCTTCEEEEECTTCCCSSC----SSCCCCEECSSSEECSEECCHHHHTSCSCCSSCCCBCTTSSCTTCBGGGTSC-C
T ss_pred CCccCCCCEeEEEcCCCEeecC----ceEEeeeEeccccccceeeeHHHhCCCCCCCceEECccccccCCCcHHHccC-C
Confidence 9999999999999999999951 3899999999999999999999999999999999999999 99999999999 9
Q ss_pred ceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEecccccccceEEEEEecccCCCCCHHHH
Q psy9573 159 NLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKWM 238 (809)
Q Consensus 159 D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~l 238 (809)
|++|||++||||||||||+|||||+||+ +.+++.|............++|.+++++.||||++++|+||++ ++||+||
T Consensus 153 D~viei~iTpNR~D~ls~~GiARE~aa~-~~~~~~p~~~~~~~~~~~~~~v~i~~~~~cp~y~~~~i~~v~~-~~Sp~wl 230 (785)
T 1b7y_B 153 EVVLDLEVTPNRPDALGLLGLARDLHAL-GYALVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLRV-APSPLWM 230 (785)
T ss_dssp CEEEECCCCTTCGGGGSHHHHHHHHHHT-TCCCCCCCCCCCEECCCCSSEEEESCTTTCSEEEEEEEESCCC-CCCCHHH
T ss_pred ceEEEecCCCChHHHhHHHHHHHHHHhc-CCCCCCCCccccccccCCceEEEecCcccCceEEEEEEECCCC-CCCHHHH
Confidence 9999999999999999999999999999 9999888662110123455889999999999999999999999 8999999
Q ss_pred HHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCCCeEEecCCeeeeecCCcEEEEe----CCce
Q psy9573 239 KIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISD----NFKI 314 (809)
Q Consensus 239 q~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~e~~~~L~~~~~~l~~~~lvi~D----~~~~ 314 (809)
|+||+++|+||||++|||||||||++|||+|+||+|||+|+|+||.+++||+|++||+++++|+++++||+| ++++
T Consensus 231 ~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~ge~~~~Ld~~~~~l~~~~lvi~D~~~~~~~~ 310 (785)
T 1b7y_B 231 QRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDLVIAGWRGEESFP 310 (785)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTTCEEEBTTSCEEECCTTCEEEEEEETTEEEE
T ss_pred HHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCCCEEEeCCCceeecCCCcEEEEeccCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred eEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCcccc
Q psy9573 315 ISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSK 394 (809)
Q Consensus 315 lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~ 394 (809)
+|+||||||++|+|+++|+|||||+|+|+|.+||+|||+|||+||||||||||+||+.+..|+++|++||.++|||+ +
T Consensus 311 ~~lagi~gg~~s~v~~~T~~i~lE~a~F~p~~Ir~tar~~~l~tdas~RfERGvD~~~~~~al~~~~~ll~~~~gg~--v 388 (785)
T 1b7y_B 311 LGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAGAR--V 388 (785)
T ss_dssp EEETTTEEBTTTBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHHCCCTTCHHHHHHHHHHHHHHHSCCE--E
T ss_pred EEecceeCCCceEeecCCceEEEEEEeeCHHHHHHHHHHcCCCchhhhhhccCCCHHHHHHHHHHHHHHHHHHcCCc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred ccceEeeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhh
Q psy9573 395 ISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIY 474 (809)
Q Consensus 395 ~~~~~~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~y 474 (809)
++++.+.++ +..++.|.++.++++++||++++.++|.++|++|||+++.+++.|.|+||+||+||++++||||||||+|
T Consensus 389 ~~~v~~~~~-~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~~~~~~~V~vPs~R~Di~~e~DliEEVaRiy 467 (785)
T 1b7y_B 389 AEALLEAGS-PKPPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQ 467 (785)
T ss_dssp ESCCEEECC-CCCCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEESSSSSEEEECCTTCCSCCSHHHHHHHHHHHH
T ss_pred ccceEEecc-CCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCCceEEEECCCcccccCCccHHHHHHHHHh
Confidence 366776666 4456789999999999999999999999999999999975556799999999999999999999999999
Q ss_pred ccCCCCCCCCCc---cccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCcccccc
Q psy9573 475 GFENIPISLPIT---VSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTM 551 (809)
Q Consensus 475 Gydnip~~~p~~---~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~l 551 (809)
||||||+++|.. .... ..++.+++.+++|+.|+++||+|++||||++++..+.|... ++.++|.||+|+|+++|
T Consensus 468 GydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~--~~~v~L~NPis~d~svL 544 (785)
T 1b7y_B 468 GYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLD--PPRLLLLNPLAPEKAAL 544 (785)
T ss_dssp CGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCC--CCSCEESSCSSTTSSEE
T ss_pred CcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCC--CCeEEEcCCCchhhhhh
Confidence 999999999976 4444 66778889999999999999999999999999876555323 56799999999999999
Q ss_pred chhhHHHHHHHHHHHhcCC-CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHH
Q psy9573 552 RSTLIGSLVNNICYNLKRK-LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDL 630 (809)
Q Consensus 552 R~SLlpgLL~~l~~N~~~~-~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dl 630 (809)
|+||+||||+++++|++|+ ++++++||+|+||+ + .|..+++++++|...+.+|. +.+.+||||+
T Consensus 545 RtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------------~e~~~lagl~~G~~~~~~w~-~~~~vdf~dl 609 (785)
T 1b7y_B 545 RTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------------REETHLAGLLFGEGVGLPWA-KERLSGYFLL 609 (785)
T ss_dssp CSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------------SEEEEEEEEEESSCBSCSSS-SCCBCSHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------------ChhhEEEEEEECCCcccccC-ccCCcCHHHH
Confidence 9999999999999999999 89999999999996 1 37899999999998899997 7888999999
Q ss_pred HHHHHHHHHhcCC--eeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhcccCCcccc
Q psy9573 631 KNDLENLFFPIKL--NFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQ 708 (809)
Q Consensus 631 Kg~le~ll~~lgi--~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~~~~~~~ 708 (809)
||+|+++++.+|+ .|++..+|+|||||+|+|+++|+.+|++|+|||+++++|||+ ++|+|||+|+ |. ....+|++
T Consensus 610 Kg~le~ll~~lgi~~~~~~~~~p~~hPGr~a~I~~~g~~iG~~G~lHP~Vl~~~~l~-~v~afEl~Ld-L~-~~~~~~~~ 686 (785)
T 1b7y_B 610 KGYLEALFARLGLAFRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLP-LP-DKPLAFQD 686 (785)
T ss_dssp HHHHHHHHHHHTCCCEEECCCCTTEEEEEEEEEEETTEEEEEEEEECHHHHHHTTCC-CCEEEEEEES-CC-CCCCCCCC
T ss_pred HHHHHHHHHHcCCceEEeecCCCcccCceEEEEEECCEEEEEEEEECHHHHHHCCCC-cEEEEEEEee-hh-hCcccccC
Confidence 9999999999985 677778899999999999999999999999999999999999 9999999999 87 33248999
Q ss_pred CCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHH
Q psy9573 709 ISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNII 788 (809)
Q Consensus 709 ~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev 788 (809)
+|+||+++|||||+||+++++++|.++|++.+++ +|++|+|||+|+|+++++||||+|||++||+.+|||||+||
T Consensus 687 ~skfP~v~RDlA~vv~~~v~~~~i~~~i~~~~~~-----ll~~v~lfDvY~G~~i~~gkKSla~~l~~r~~~rTLtd~ei 761 (785)
T 1b7y_B 687 PSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGP-----YLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRTLRDEEV 761 (785)
T ss_dssp CCCSCCEEEEECCCEESSSCHHHHHHHHHHHHCT-----TEEEEEEEECCCCTTSCTTEECCEEEEEECCSSSCCCHHHH
T ss_pred CCCCCCcceeEEEEeCCCCCHHHHHHHHHHhCcc-----ceeEEEEEEEecCCCCCCCceEEEEEEEEECCCCCCCHHHH
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccCC
Q psy9573 789 NNAINALINSVCKNFNAKLRN 809 (809)
Q Consensus 789 ~~~~~~ii~~L~~~~~a~lR~ 809 (809)
++++++|+++|+++ ||+||.
T Consensus 762 ~~~~~~i~~~l~~~-ga~LR~ 781 (785)
T 1b7y_B 762 EEAVSRVAEALRAR-GFGLRG 781 (785)
T ss_dssp HHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHc-CCEeec
Confidence 99999999999999 999994
No 4
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.9e-105 Score=933.19 Aligned_cols=480 Identities=21% Similarity=0.320 Sum_probs=415.7
Q ss_pred CceeEEeecCCCcccccChHHHHHHHHHhcCCCCCCCCccccCCC-CCcceeEEecccccccceEEEEEecccCCCC---
Q psy9573 158 NNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPN-YKEILPVKISAIDLCGRFSGRIIRGINPKAL--- 233 (809)
Q Consensus 158 ~D~ileieitpNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~-~~~~~~v~i~~~~~cp~y~~~vi~~v~v~~~--- 233 (809)
+|.++||++|||||||||++|||||+|++.+ +++.|.+...... ....+.|.+++++.||||+|++|+||++ ++
T Consensus 59 ~d~i~ei~itpNR~D~ls~~GiARela~~~~-~~~~p~~~~~~~~~~~~~i~v~~~~~~~cp~y~~~vi~~V~~-~~~~~ 136 (589)
T 3l4g_B 59 DVVLYKIDVPANRYDLLCLEGLVRGLQVFKE-RIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKF-TKDRY 136 (589)
T ss_dssp SSEEEEEECCTTCSTTSSHHHHHHHHHHHTT-SSCCCCCEEECCSSCCCEEEECTTTTTTSCEEEEEEECCBCC-CHHHH
T ss_pred CCeEEEEecCCChhHHhHHHHHHHHHHHhcC-CCCCCCccccCCCCCceeEEEeecCcccCCeEEEEEEECcCc-Ccccc
Confidence 6999999999999999999999999988766 8888887654322 2344666667789999999999999999 55
Q ss_pred -CHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCCC-CeEEecCC-eeeeec--------
Q psy9573 234 -TPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIG-ETIKISND-LIIKID-------- 302 (809)
Q Consensus 234 -sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~~-e~~~~L~~-~~~~l~-------- 302 (809)
||+|||+||+++|.|+ |++||||| ||+|||+++++|+.+.++ ++|++||+ +++++.
T Consensus 137 ~Sp~wlq~rL~~~~~r~-~~~VdItn------------~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~ 203 (589)
T 3l4g_B 137 DSFIELQEKLHQNICRK-RALVAIGT------------HDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKT 203 (589)
T ss_dssp HHHHHHHHHTTTTTTTT-TTSEEEEE------------EEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTT
T ss_pred CCHHHHHHHHHHccCCC-ceEEehhh------------hhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcc
Confidence 8999999999999998 77999999 899999999999888865 59999998 334441
Q ss_pred --------------CCcEEEEeCCce-eEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCcccccccccC
Q psy9573 303 --------------KNIGIISDNFKI-ISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERG 367 (809)
Q Consensus 303 --------------~~~lvi~D~~~~-lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tdas~Rferg 367 (809)
+.++||+|++++ +||||||||++|+|+++||||||||| |
T Consensus 204 ~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImgG~~S~Vt~~T~~V~lE~A--------------------------g 257 (589)
T 3l4g_B 204 DNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECT--------------------------G 257 (589)
T ss_dssp CTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEEBSTTCCCTTCCCEEEEEE--------------------------E
T ss_pred cccccccceecccCCCcEEEEECCCCEEEECCccCCccceeeCCCCEEEEEEe--------------------------e
Confidence 345899999986 79999999999999999999999999 5
Q ss_pred CCHHhHHHHHHHHHHHHHHHhCCcccccc--ce------EeeeecCCcceEEEeehhhhhcccCcccCHHHHHHHHHhcC
Q psy9573 368 IDFSKTIKCLERVTNLIIEICGTSSSKIS--QI------DDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLK 439 (809)
Q Consensus 368 vD~~~~~~al~~~~~ll~~~~gg~~~~~~--~~------~~~~~~~~~~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lg 439 (809)
+||+.+..|+++|++||.++|||+ +.+. .+ .+.++. ..++.|.++.++|+++||++++.++|.++|++||
T Consensus 258 ~D~~~~~~al~~a~~li~e~~gg~-~~~e~~~v~~~~g~~~~~p~-~~~~~i~l~~~~i~~llG~~i~~~~i~~iL~~Lg 335 (589)
T 3l4g_B 258 TDFTKAKIVLDIIVTMFSEYCENQ-FTVEAAEVVFPNGKSHTFPE-LAYRKEMVRADLINKKVGIRETPENLAKLLTRMY 335 (589)
T ss_dssp SCHHHHHHHHHHHHHHHGGGBTTS-SEEECEEEECTTSCEEEECC-CCCEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTT
T ss_pred eCHHHHHHHHHHHHHHHHHHcCCC-ceEEEEEEEecCCceEeccc-ccceEEEecHHHHHHhhCCCCCHHHHHHHHHHCC
Confidence 889999999999999999999985 1111 11 222333 3457899999999999999999999999999999
Q ss_pred CEEEEe--CCEEEEeCCCccCCCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeee
Q psy9573 440 FHFIQK--NNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVIN 517 (809)
Q Consensus 440 f~v~~~--~~~~~v~vP~~R~DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evit 517 (809)
|+++.. ++.|.|+||+||+||++++||||||||+|||||||+++|... ..+..++.+++.+++|+.|+++||+|++|
T Consensus 336 f~~~~~~~~~~~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~-~~g~~~~~~~~~~~ir~~l~~~Gf~Evit 414 (589)
T 3l4g_B 336 LKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTY-TIANQFPLNKLTELLRHDMAAAGFTEALT 414 (589)
T ss_dssp CEEEECSSSSEEEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHTTCEECCC
T ss_pred CeEEEcCCCceEEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCcc-ccCCCCHHHHHHHHHHHHHHHCCCEEEec
Confidence 999754 457999999999999999999999999999999999999764 34456778889999999999999999999
Q ss_pred ccccChHHH-hhhc-CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCc
Q psy9573 518 YSFIEDSLE-KDFS-QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFT 595 (809)
Q Consensus 518 ysf~s~~~~-~~~~-~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~ 595 (809)
|||++++.. +.|+ +....+.++|+||+|+|+++||+||+||||+++++|++|+ .++|+||+|+||++++..
T Consensus 415 ysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~-~~vrlFEiG~Vf~~d~~~------ 487 (589)
T 3l4g_B 415 FALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMP-LPLKLFEISDIVIKDSNT------ 487 (589)
T ss_dssp CSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSC-SCEEEEEEEEEEEECTTS------
T ss_pred CcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCC-CceEEEEeeeEEecCCcc------
Confidence 999999864 4554 2212457999999999999999999999999999999986 479999999999986542
Q ss_pred cCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe---------eeeccCCCCcCccEEEEEECCE
Q psy9573 596 VSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN---------FLKINNSILHPNRSALIFKKTK 666 (809)
Q Consensus 596 ~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~---------~~~~~~~~~hPgrsA~I~~~g~ 666 (809)
..+..|..+++++++|. ..+||++||+++.+++.+|+. +++..+++|||||||.|+++|+
T Consensus 488 ~~~~~e~~~la~~~~g~-----------~~~f~~lkg~le~ll~~lg~~~~~~~~~~~~~~~~~~~~hPGr~A~I~~~g~ 556 (589)
T 3l4g_B 488 DVGAKNYRHLCAVYYNK-----------NPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQ 556 (589)
T ss_dssp TTSEEEEEEEEEEEESS-----------SCCHHHHHHHHHHHHHHTTCCBSTTTTSEEEEECCCTTEEEEEEEEEEETTE
T ss_pred ccCCccccEEEEEEECC-----------CCCHHHHHHHHHHHHHHcCCCccccccceEEeccCCCCccCCCEEEEEECCe
Confidence 23567899999999993 468999999999999999863 5567889999999999999999
Q ss_pred EEEEEEeecHHHHHhCCCCCceEEEEeehHHHh
Q psy9573 667 NIGFIGEIHPILQQKYDLPLAPIFFEVDALELQ 699 (809)
Q Consensus 667 ~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~ 699 (809)
.||++|+|||+++++|||+.|+|+|||||+.|.
T Consensus 557 ~iG~~GelHP~v~~~~~l~~~v~~~El~l~~l~ 589 (589)
T 3l4g_B 557 SVGKLGVLHPDVITKFELTMPCSSLEINIGPFL 589 (589)
T ss_dssp EEEEEEEECHHHHHHTTCCSCEEEEEEECGGGC
T ss_pred EEEEEEEECHHHHHHcCCCCCeEEEEEEhHHhC
Confidence 999999999999999999999999999999863
No 5
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-62 Score=538.70 Aligned_cols=283 Identities=20% Similarity=0.247 Sum_probs=253.7
Q ss_pred cCCCCC-CCCchhhhcccCceeEEeecC-----CCcccccChHHHHHHHHHhcCCCCCCCCccccCCCCCcceeEEeccc
Q psy9573 141 LPEDAP-IGKNFYDYYKFNNLKFVIKLT-----PNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAI 214 (809)
Q Consensus 141 l~~~~~-~G~~~~~~~~l~D~ileieit-----pNR~D~ls~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~v~i~~~ 214 (809)
|.++++ +|.++.+++ |.++||++| ||||||||++||||||||+++.+++.|.+... ...++|.++++
T Consensus 24 l~~~~~~~G~~~~~~~---d~iiei~it~~~~~pNR~D~lS~~GiARelaa~~~~~~~~p~~~~~----~~~~~v~v~~~ 96 (348)
T 2cxi_A 24 WEDLVLYAKCELDDVW---EENGKVYFKLDSKDTNRPDLWSAEGVARQIKWALGIEKGLPKYEVK----KSNVTVYVDEK 96 (348)
T ss_dssp HHHHHHHTTEEEEEEE---EETTEEEEEEEECCTTCGGGSSHHHHHHHHHHHTTSSCSSCCCCEE----EEEEEEEECGG
T ss_pred HHhhhhhccCCHHHcC---ceEEEEEccCCCCCCChHHHhHHHHHHHHHHHHhCCCCCCCCcccc----ccceEEEECCC
Confidence 444566 899999986 899999999 99999999999999999999999988876421 23477888876
Q ss_pred --ccccceEEEEEecccCCC----CCHHHHHHHHHHC-CCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEEcCC
Q psy9573 215 --DLCGRFSGRIIRGINPKA----LTPKWMKIRLEDS-GQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNI 287 (809)
Q Consensus 215 --~~cp~y~~~vi~~v~v~~----~sp~~lq~rL~~~-g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~a~~ 287 (809)
+.||+|+|++|+||++ . +||+|||+||+++ |++ +|.+ |+|+||+|||+++|+||.+++
T Consensus 97 ~~~~~p~~~~~vi~~v~~-~~~~~~sp~wlq~rL~~~~G~~-r~~V-------------pi~a~Dldki~g~i~vr~a~~ 161 (348)
T 2cxi_A 97 LKDIRPYGVYAIVEGLRL-DEDSLSQMIQLQEKIALTFGRR-RREV-------------AIGIFDFDKIKPPIYYKAAEK 161 (348)
T ss_dssp GTTTSCEEEEEEEESCCC-CHHHHHHHHHHHHHHHHTTTTT-TTSE-------------EEEEEEGGGSCSSEEEEEECT
T ss_pred ccccCCeEEEEEEECccc-CcCCCCCHHHHHHHHHHHhCCc-ccCC-------------cccccCHHHCCCCeEEEEcCC
Confidence 8999999999999998 7 8999999999997 665 3321 999999999999999999999
Q ss_pred CCeEEecCCeeeeecC---------------------CcEEEEeCCc-eeEecccccCccc-eeecCCceEEEEEeecCc
Q psy9573 288 GETIKISNDLIIKIDK---------------------NIGIISDNFK-IISLSGIINGFDA-SVTLNTKDIYLGVAFWWP 344 (809)
Q Consensus 288 ~e~~~~L~~~~~~l~~---------------------~~lvi~D~~~-~lslagi~g~~~s-~v~~~T~~illE~a~F~p 344 (809)
+|+|++||+++ +++. +++||+|+++ ++|+||||||++| +|+++|+|||||+|
T Consensus 162 ge~f~~L~~~~-~l~~~e~~~~~~~~~ky~~~~~~~~~~~vI~D~~~~vlsl~gi~~g~~sg~Vt~~T~~iliE~a---- 236 (348)
T 2cxi_A 162 TEKFAPLGYKE-EMTLEEILEKHEKGREYGHLIKDKQFYPLLIDSEGNVLSMPPIINSEFTGRVTTDTKNVFIDVT---- 236 (348)
T ss_dssp TCEECBTTCSS-CEEHHHHHHHSHHHHHHGGGTTTSSSEEEEEETTSCEEEETTTEEBSSSSCCCTTCCSEEEEEE----
T ss_pred CCEEEECCCcc-ccCHHHhhhhhccccccchhhccCCceEEEEECCCCEEEecCeecCCCcCcccCCCCEEEEEEe----
Confidence 99999999987 6653 4899999998 9999999999999 99999999999999
Q ss_pred hhHhhhccccCCCcccccccccCCCHHhHHHHHHHHHHHHHHHhCCccccccceEeeee-----cC-CcceEEEeehhhh
Q psy9573 345 NSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQII-----NI-PVRKEIKVRSERV 418 (809)
Q Consensus 345 ~~Ir~t~r~l~l~tdas~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~~~~~~~~-----~~-~~~~~I~l~~~~i 418 (809)
|+||+.+..|+++++++|.++ ||+ ++++.+.++ .+ ..++.|.++.++|
T Consensus 237 ----------------------g~d~~~~~~al~~~~~ll~e~-gg~---v~~v~~~~~~~~~~~~~~~~~~i~~~~~~i 290 (348)
T 2cxi_A 237 ----------------------GWKLEKVMLALNVMVTALAER-GGK---IRSVRVVYKDFEIETPDLTPKEFEVELDYI 290 (348)
T ss_dssp ----------------------ESCHHHHHHHHHHHHHHHHTT-TCE---EEEEEEECSSCEEEECCCCCEEEEEEHHHH
T ss_pred ----------------------cCCHHHHHHHHHHHHHHHHHh-CCC---ccceEEEecCcccccCCCCCeEEEecHHHH
Confidence 899999999999999999999 777 676666554 33 4567999999999
Q ss_pred hcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhhcc
Q psy9573 419 IKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGF 476 (809)
Q Consensus 419 ~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGy 476 (809)
+++||++++.++|.++|++|||+++..++.|.|+||+||+||.+++||||||||+|||
T Consensus 291 ~~~lG~~l~~~~i~~iL~~lg~~~~~~~~~~~V~vP~~R~DI~~~~DliEEVaR~yGy 348 (348)
T 2cxi_A 291 RKLSGLELNDGEIKELLEKMMYEVEISRGRAKLKYPAFRDDIMHARDILEDVLIAYGY 348 (348)
T ss_dssp HHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEEECTTCCCCCSHHHHHHHHHHHHTC
T ss_pred HHHhCCCCCHHHHHHHHHHcCCeEEeCCCeEEEECCCCcccCCcccHHHHHhHHhcCC
Confidence 9999999999999999999999997666789999999999999999999999999999
No 6
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=100.00 E-value=9.3e-50 Score=446.30 Aligned_cols=309 Identities=14% Similarity=0.144 Sum_probs=257.7
Q ss_pred cCCCCCC---CCCccccCCCCCcchHHHHHHHHHHHhC--------CceEeee-ccccChHHHh-hhc-CCCC-----CC
Q psy9573 476 FENIPIS---LPITVSKISPIKEGYQSLFSIRHQLAFA--------DYQEVIN-YSFIEDSLEK-DFS-QNIN-----NY 536 (809)
Q Consensus 476 ydnip~~---~p~~~~~~~~~~~~~~~~~~lr~~L~~~--------Gf~Evit-ysf~s~~~~~-~~~-~~~~-----~~ 536 (809)
|+|||++ .|......+...+...+.+++|+.|.++ ||+|+.+ +.+++..... .++ |.+. .+
T Consensus 27 ~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~D 106 (415)
T 3cmq_A 27 HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGD 106 (415)
T ss_dssp SCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGG
T ss_pred cccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccc
Confidence 7899876 4543445566778888999999999999 9999999 7888777643 332 2200 11
Q ss_pred cEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCc-----------------
Q psy9573 537 PIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGY----------------- 599 (809)
Q Consensus 537 ~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~----------------- 599 (809)
.+.| .+..+|||++.|+++++++.| ++ ++||+|+||++|+.+ .++.
T Consensus 107 tfyi-----~~~~vLRThts~~~~~~l~~~-----~~-k~~~~G~VyR~D~~d------a~h~n~fhQ~egv~lfe~g~~ 169 (415)
T 3cmq_A 107 NYYL-----NRTHMLRAHTSAHQWDLLHAG-----LD-AFLVVGDVYRRDQID------SQHYPIFHQLEAVRLFSKHEL 169 (415)
T ss_dssp SCBS-----SSSEEECSSGGGGHHHHHHTT-----CS-EEEEEEEEECCCCCB------TTBCSEEEEEEEEEEEEHHHH
T ss_pred eEEe-----cCCeEEcCCCcHHHHHHHHHC-----CC-CEEEeeeEEeccchh------hhhhHHhcCCCcEEEEeccce
Confidence 1222 145899999999999999876 23 999999999987532 1111
Q ss_pred ----cceeEEeEeeeCCC-CCCCCCCCCCcCC--HHHHHHHHHHHHHhc-CC----eeeeccCCCCcCccEEEEEECCE-
Q psy9573 600 ----KELKKIAVIAYGPL-LEPQWGEENRNID--YFDLKNDLENLFFPI-KL----NFLKINNSILHPNRSALIFKKTK- 666 (809)
Q Consensus 600 ----~E~~~l~~~~~G~~-~~~~w~~~~~~~d--f~dlKg~le~ll~~l-gi----~~~~~~~~~~hPgrsA~I~~~g~- 666 (809)
.|..+++++.+|.. .+.+|+.....+| ||++||+|+.+++.+ |+ .|++..+|++|||++|+|+++|+
T Consensus 170 f~~~~~~~~la~~~~g~~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~~~~~~~~~~p~~hPgr~a~I~~~g~w 249 (415)
T 3cmq_A 170 FAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEW 249 (415)
T ss_dssp TTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTEEEEEEEEEEETTEE
T ss_pred eccccccceEEEEEecCcccccccccccccccccHHHHHHHHHHHHHHHcCCCceEEEecCCCCCCCCceEEEEEECCee
Confidence 22455777778865 5667876655555 999999999999986 75 45777789999999999999999
Q ss_pred --EEEEEEeecHHHHHhCCCCCce-EEEEeehHHHhc------------------------c-c--CCccccCCCCCCce
Q psy9573 667 --NIGFIGEIHPILQQKYDLPLAP-IFFEVDALELQK------------------------R-Q--IPNYIQISKFPNVV 716 (809)
Q Consensus 667 --~iG~iGelhP~vl~~~~i~~~v-~~~El~l~~L~~------------------------~-~--~~~~~~~skfP~~~ 716 (809)
.+|+ |+|||+++++|||+.++ |+|||+|++|.+ . . ..+|+|+|+||+++
T Consensus 250 lE~lG~-G~lhP~Vl~~~gl~~~vg~afel~le~l~~~~~~i~DiR~~~~~d~rfl~qf~~~~~~~~~~~~~~skfP~v~ 328 (415)
T 3cmq_A 250 LEVLGC-GVMEQQLVNSAGAQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVI 328 (415)
T ss_dssp EEEEEE-EEECHHHHHHTTCTTEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCCCEE
T ss_pred EEEEEE-EEeCHHHHHHcCCCCcceEEEEEcHHHHhhhhcCcchhhhhhcccHHHHHhcccccccccccccCcCCCCCcc
Confidence 8999 99999999999999889 999999999863 1 1 24899999999999
Q ss_pred eeEEEEEcCC-CCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHHHHH
Q psy9573 717 RDIVFIFNKN-INLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINAL 795 (809)
Q Consensus 717 RDlS~vv~~~-~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~~~i 795 (809)
||||||||++ ++++++.++|++++++ +|++|+|||+|+|+ ++|+||+|||++||+.+|||||+||++++++|
T Consensus 329 RDla~~v~~~~v~~~~i~~~ir~~~~~-----lle~v~lfDvy~g~--~~gkkSla~rl~~r~~~rTLtd~ev~~~~~~i 401 (415)
T 3cmq_A 329 NDISFWLPSENYAENDFYDLVRTIGGD-----LVEKVDLIDKFVHP--KTHKTSHCYRITYRHMERTLSQREVRHIHQAL 401 (415)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHGG-----GEEEEEEEEEEECT--TTCCEEEEEEEEECCSSSCCCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCccHHHHHHHHHHhCCC-----ceEEEEEEEEEeCC--CCCcEEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence 9999999999 9999999999999988 99999999999998 79999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCC
Q psy9573 796 INSVCKNFNAKLRN 809 (809)
Q Consensus 796 i~~L~~~~~a~lR~ 809 (809)
+++|++++||+||.
T Consensus 402 ~~~l~~~~ga~LR~ 415 (415)
T 3cmq_A 402 QEAAVQLLGVEGRF 415 (415)
T ss_dssp HHHHHHHSCCEECC
T ss_pred HHHHHHHhCCEeCC
Confidence 99999999999993
No 7
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.8e-47 Score=430.31 Aligned_cols=288 Identities=14% Similarity=0.157 Sum_probs=243.1
Q ss_pred hhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHh-hhcCC--CCCC-cEEeeCCC-
Q psy9573 470 IIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEK-DFSQN--INNY-PIELLNPI- 544 (809)
Q Consensus 470 IaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~-~~~~~--~~~~-~i~L~NPi- 544 (809)
+++-|++| .+.|......+...+..++.+++|+.+.++||+|+.++.+++..... .++.. ...+ .+.|.||.
T Consensus 36 ~~~~~~~d---~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~ 112 (549)
T 2du7_A 36 LIKDKHID---NKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPR 112 (549)
T ss_dssp SSCCCTTT---TSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCC
T ss_pred hhhccCcC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCC
Confidence 56777777 44554434456677888899999999999999999999999887652 22121 0023 67788873
Q ss_pred -------------------------------------------------------------------Cc---------cc
Q psy9573 545 -------------------------------------------------------------------SK---------KF 548 (809)
Q Consensus 545 -------------------------------------------------------------------s~---------e~ 548 (809)
+. ++
T Consensus 113 ~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~ 192 (549)
T 2du7_A 113 PDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTT 192 (549)
T ss_dssp CCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEE
T ss_pred cccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccc
Confidence 12 58
Q ss_pred cccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCH
Q psy9573 549 NTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDY 627 (809)
Q Consensus 549 s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df 627 (809)
++|||||+||||.++++|++|+.+++++||+|+||++++. + .+++.|..+++++++|. .+||
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d------~th~~ef~qLaglv~G~-----------~vdF 255 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQRED------RSHLMSYHSASCVVVGE-----------DVSV 255 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCS------SSCCSCEEEEEEEEECT-----------TCCH
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCccc------CcCCCcceEEEEEEECC-----------CCCH
Confidence 9999999999999999999999999999999999987542 1 23568999999999993 6899
Q ss_pred HHHHHHHHHHHHhcCC---eeeec--cCCCCcCccEEEEEEC-----C-EEEEEEEeecHHHHHhCCCCCceEEEEeehH
Q psy9573 628 FDLKNDLENLFFPIKL---NFLKI--NNSILHPNRSALIFKK-----T-KNIGFIGEIHPILQQKYDLPLAPIFFEVDAL 696 (809)
Q Consensus 628 ~dlKg~le~ll~~lgi---~~~~~--~~~~~hPgrsA~I~~~-----g-~~iG~iGelhP~vl~~~~i~~~v~~~El~l~ 696 (809)
||+||+|+.+++.+|+ .|++. .+++||||++|+|.++ | +.||++|+|||+++++|||+.++|+|||+|+
T Consensus 256 ~DLKG~Le~ll~~LGi~~~rfrps~~~~p~yhPGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~v~aFELgLE 335 (549)
T 2du7_A 256 DDGKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNLGLGVE 335 (549)
T ss_dssp HHHHHHHHHHHGGGTCCCCCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEEEEEEBHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCCCCcccCCceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCCeEEEEEeHH
Confidence 9999999999999985 46665 3688999999999996 6 7999999999999999999999999999999
Q ss_pred HHhccc--CC-----ccccCCCCCCceeeEEEEEc-CCCC--------HHHHHHHHHhccCCCCcccceEEEEEEEEEec
Q psy9573 697 ELQKRQ--IP-----NYIQISKFPNVVRDIVFIFN-KNIN--------LQDVMDTMFFEKNNNSNCFIIQSISLFDKYCG 760 (809)
Q Consensus 697 ~L~~~~--~~-----~~~~~skfP~~~RDlS~vv~-~~~~--------~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g 760 (809)
+|.+.. .+ .|.++|+||++.|||||+|| ++++ +++|+++|++.+ .+++|+|||+|+|
T Consensus 336 rL~m~~~~i~dIR~~~~~dlsrFPav~RDlAlvVd~~~Vp~~v~~~~~a~~I~~~i~~~~-------~Le~V~LFDVY~G 408 (549)
T 2du7_A 336 RLAMIIYGYEDVRAMVYPQFYEYRLSDRDIAGMIRVDKVPILDEFYNFANELIDICIANK-------DKESPCSVEVKRE 408 (549)
T ss_dssp HHHHHHTTCSCSHHHHSSSSSCCCCCHHHHHTTCCCSCCCSSHHHHHHHHHHHHHHCCCC-------CCSSCCSCCCCCC
T ss_pred HHHHHhcCCCcccccccCCcccCCcccccEEEEEcHHhCCcccccchHHHHHHHHHHHhC-------CCCceEEEEEEcC
Confidence 997421 12 68999999999999999999 8888 999999999764 3889999999999
Q ss_pred CCCCCCceEEEEEEEEeCCCCCCC
Q psy9573 761 KKLKDNEKSFAFRCILQDPKKTLK 784 (809)
Q Consensus 761 ~~i~~gkkSl~~rl~~~~~~rTLt 784 (809)
+++++|+||||||++||+.+|-|-
T Consensus 409 ~~i~eGkKSlA~sl~~r~~dr~l~ 432 (549)
T 2du7_A 409 FNFNGERRVIKVEIFENEPNKKLL 432 (549)
T ss_dssp CCSSSSCCCCEECCCCCSTTSCSS
T ss_pred CCCCCCceEEEEEEEEECCCCCcC
Confidence 999999999999999999999874
No 8
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=1.8e-46 Score=426.01 Aligned_cols=282 Identities=14% Similarity=0.149 Sum_probs=202.1
Q ss_pred CCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhh-cCC-CCCC-cEEeeCCC----------
Q psy9573 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDF-SQN-INNY-PIELLNPI---------- 544 (809)
Q Consensus 479 ip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~-~~~-~~~~-~i~L~NPi---------- 544 (809)
|+.+.|......+...+..++.+++|+++.++||+|+.++.+++.... ..+ .+. ...+ .+.|.||.
T Consensus 50 id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~ 129 (648)
T 2odr_B 50 INESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEK 129 (648)
T ss_dssp CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC---------
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhh
Confidence 344555443345666778889999999999999999999999988764 222 111 0012 67788875
Q ss_pred ---------------------------------------------------------Cc---------cccccchhhHHH
Q psy9573 545 ---------------------------------------------------------SK---------KFNTMRSTLIGS 558 (809)
Q Consensus 545 ---------------------------------------------------------s~---------e~s~lR~SLlpg 558 (809)
+. ++++|||||+||
T Consensus 130 ~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPG 209 (648)
T 2odr_B 130 ISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSG 209 (648)
T ss_dssp ------------------------------------------------------------CCCCCCBCCSEEECCCTHHH
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhh
Confidence 11 489999999999
Q ss_pred HHHHHHHHhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHH
Q psy9573 559 LVNNICYNLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENL 637 (809)
Q Consensus 559 LL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~l 637 (809)
||.++++|++|+.+++++||+|+||++++. + .+++.|..+++++++|. .+||||+||+|+.+
T Consensus 210 LL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lD------ath~~Ef~qLeGlv~G~-----------~vdF~DLKGvLE~L 272 (648)
T 2odr_B 210 WFLTVSDLMNKKPLPFKLFSIDRCFRREQKED------KSHLMTYHSASCAIAGE-----------GVDINDGKAIAEGL 272 (648)
T ss_dssp HHHHHHHHTTTSCSCEEEEEEEEEECCCSCCC------SSCCSEEEEEEEEEECT-----------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEEeeEEecCcccc------ccCCCcceEEEEEEECC-----------CCCHHHHHHHHHHH
Confidence 999999999999999999999999986542 2 23567999999999993 68999999999999
Q ss_pred HHhcCC---eeeecc--CCCCcCccEEEEEEC-----C-EEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhccc--CC
Q psy9573 638 FFPIKL---NFLKIN--NSILHPNRSALIFKK-----T-KNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQ--IP 704 (809)
Q Consensus 638 l~~lgi---~~~~~~--~~~~hPgrsA~I~~~-----g-~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~--~~ 704 (809)
++.+|+ +|++.. +++||||++|+|.++ | +.||++|+|||+++++|||+.++|+|||+|++|.+.. .+
T Consensus 273 L~~LGi~~vrfrpse~~~p~yhPGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~V~AFELgLErLaml~~gi~ 352 (648)
T 2odr_B 273 LSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNFA 352 (648)
T ss_dssp HHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTCS
T ss_pred HHHcCCCeEEEEECCCCCcCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHHHHHhcCCC
Confidence 999986 466653 688999999999985 5 7999999999999999999999999999999997422 22
Q ss_pred -----ccccCCCCCCceeeEEEEEc-CCCC--------HHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEE
Q psy9573 705 -----NYIQISKFPNVVRDIVFIFN-KNIN--------LQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSF 770 (809)
Q Consensus 705 -----~~~~~skfP~~~RDlS~vv~-~~~~--------~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl 770 (809)
.|.++|+||+++|||||+|| ++++ +++|+++|++.+ .+++|.|||+|+|+++++|+|||
T Consensus 353 DIR~~~~~diSRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~~~-------gLesV~LFDVYeGe~I~eGKKSL 425 (648)
T 2odr_B 353 DVREMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK-------DLKSPCELAIEKTFSFGKTKKNV 425 (648)
T ss_dssp CHHHHHCGGGSCCCCCHHHHHTTEEESCCCSSHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred cccccccCCcCCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcC-------CCCeEEEEEEecCCCCCCCceEE
Confidence 68999999999999999999 8888 999999999875 48999999999999999999999
Q ss_pred EEEEEEeCCCCCCC
Q psy9573 771 AFRCILQDPKKTLK 784 (809)
Q Consensus 771 ~~rl~~~~~~rTLt 784 (809)
||+++||+.+|-|-
T Consensus 426 AfsLtfr~~dr~l~ 439 (648)
T 2odr_B 426 KINIFEKEEGKNLL 439 (648)
T ss_dssp --------------
T ss_pred EEEEEEECCCCCcC
Confidence 99999999998764
No 9
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=1.9e-46 Score=425.98 Aligned_cols=283 Identities=14% Similarity=0.150 Sum_probs=203.4
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhh-cCC-CCCC-cEEeeCCC---------
Q psy9573 478 NIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDF-SQN-INNY-PIELLNPI--------- 544 (809)
Q Consensus 478 nip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~-~~~-~~~~-~i~L~NPi--------- 544 (809)
+|+.+.|......+...+..++.+++|+++.++||+|+.++.+++.... ..+ .+. ...+ .+.|.||.
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~ 128 (665)
T 2odr_A 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (665)
T ss_dssp CTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 4555666544445667788889999999999999999999999988764 222 111 0012 67788875
Q ss_pred ----------------------------------------------------------Cc---------cccccchhhHH
Q psy9573 545 ----------------------------------------------------------SK---------KFNTMRSTLIG 557 (809)
Q Consensus 545 ----------------------------------------------------------s~---------e~s~lR~SLlp 557 (809)
+. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlP 208 (665)
T 2odr_A 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (665)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 11 48999999999
Q ss_pred HHHHHHHHHhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHH
Q psy9573 558 SLVNNICYNLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLEN 636 (809)
Q Consensus 558 gLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ 636 (809)
|||.++++|++|+.+++++||+|+||++++. + .+++.|..+++++++|. .+||||+||+|+.
T Consensus 209 GLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lD------ath~~Ef~qLeGlv~G~-----------~vdF~DLKGvLE~ 271 (665)
T 2odr_A 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED------KSHLMTYHSASCAIAGE-----------GVDINDGKAIAEG 271 (665)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCC------SSCCSEEEEEEEEEECT-----------TCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCCeEEEEEeeEEecCcccc------ccCCCcceEEEEEEECC-----------CCCHHHHHHHHHH
Confidence 9999999999999999999999999986542 2 23567999999999993 6899999999999
Q ss_pred HHHhcCC---eeeecc--CCCCcCccEEEEEEC-----C-EEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhccc--C
Q psy9573 637 LFFPIKL---NFLKIN--NSILHPNRSALIFKK-----T-KNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQ--I 703 (809)
Q Consensus 637 ll~~lgi---~~~~~~--~~~~hPgrsA~I~~~-----g-~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~--~ 703 (809)
+++.+|+ +|++.. +++||||++|+|.++ | +.||++|+|||+++++|||+.++|+|||+|++|.+.. .
T Consensus 272 LL~~LGi~~vrfrpse~~~p~yhPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFELgLErLaml~~gi 351 (665)
T 2odr_A 272 LLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNF 351 (665)
T ss_dssp HHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTC
T ss_pred HHHHcCCCeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHHHHHhcCC
Confidence 9999986 466653 688999999999985 5 7999999999999999999999999999999997422 2
Q ss_pred C-----ccccCCCCCCceeeEEEEEc-CCCC--------HHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceE
Q psy9573 704 P-----NYIQISKFPNVVRDIVFIFN-KNIN--------LQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKS 769 (809)
Q Consensus 704 ~-----~~~~~skfP~~~RDlS~vv~-~~~~--------~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkS 769 (809)
+ .|.++|+||+++|||||+|| ++++ +++|+++|++.+ .+++|.|||+|+|+++++|+||
T Consensus 352 ~DIR~~~~~diSRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~~~-------gLesV~LFDVYeGe~I~eGKKS 424 (665)
T 2odr_A 352 ADVREMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK-------DLKSPCELAIEKTFSFGKTKKN 424 (665)
T ss_dssp SCHHHHHCGGGSCCCCCHHHHHTTEEESCCCSSHHHHHHHHHHHHHHHHC------------------------------
T ss_pred CcccccccCCcCCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcC-------CCCeEEEEEEecCCCCCCCceE
Confidence 2 68999999999999999999 8888 999999999875 4899999999999999999999
Q ss_pred EEEEEEEeCCCCCCC
Q psy9573 770 FAFRCILQDPKKTLK 784 (809)
Q Consensus 770 l~~rl~~~~~~rTLt 784 (809)
|||+++||+.+|-|-
T Consensus 425 LAfsLtfr~~dr~l~ 439 (665)
T 2odr_A 425 VKINIFEKEEGKNLL 439 (665)
T ss_dssp ---------------
T ss_pred EEEEEEEECCCCCcC
Confidence 999999999998764
No 10
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=2e-46 Score=425.98 Aligned_cols=284 Identities=14% Similarity=0.150 Sum_probs=192.3
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhh-cCC-CCCC-cEEeeCCC---------
Q psy9573 478 NIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDF-SQN-INNY-PIELLNPI--------- 544 (809)
Q Consensus 478 nip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~-~~~-~~~~-~i~L~NPi--------- 544 (809)
+|+.+.|......+...+..++.+++|+++.++||+|+.++.+++.... ..+ .+. ...+ .+.|.||.
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~ 128 (685)
T 2odr_D 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (685)
T ss_dssp CGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 3455556544445667788889999999999999999999999988764 222 111 0012 67788874
Q ss_pred ----------------------------------------------------------Cc---------cccccchhhHH
Q psy9573 545 ----------------------------------------------------------SK---------KFNTMRSTLIG 557 (809)
Q Consensus 545 ----------------------------------------------------------s~---------e~s~lR~SLlp 557 (809)
+. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (685)
T 2odr_D 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (685)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 11 48999999999
Q ss_pred HHHHHHHHHhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHH
Q psy9573 558 SLVNNICYNLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLEN 636 (809)
Q Consensus 558 gLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ 636 (809)
|||.++++|++|+.+++++||+|+||++++. + .+++.|..+++++++|. .+||||+||+|+.
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lD------ath~~Ef~qLeGlv~G~-----------~vDF~DLKGvLE~ 271 (685)
T 2odr_D 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED------KSHLMTYHSASCAIAGE-----------GVDINDGKAIAEG 271 (685)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCC------SSCCSEEEEEEEEEECT-----------TCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCeEEEEeccEEecCcccc------ccCCCcceEEEEEEECC-----------CCCHHHHHHHHHH
Confidence 9999999999999999999999999986542 2 23567999999999993 6899999999999
Q ss_pred HHHhcCC---eeeecc--CCCCcCccEEEEEEC-----C-EEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhccc--C
Q psy9573 637 LFFPIKL---NFLKIN--NSILHPNRSALIFKK-----T-KNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQ--I 703 (809)
Q Consensus 637 ll~~lgi---~~~~~~--~~~~hPgrsA~I~~~-----g-~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~--~ 703 (809)
+++.+|+ +|++.. +++||||++|+|.++ | +.||++|+|||+++++|||+.++|+|||+|++|.+.. .
T Consensus 272 LL~~LGi~~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFELgLErLamlk~gi 351 (685)
T 2odr_D 272 LLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNF 351 (685)
T ss_dssp HHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTC
T ss_pred HHHHcCCCeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHHHHHhcCC
Confidence 9999986 466653 688999999999985 4 7999999999999999999999999999999997422 2
Q ss_pred C-----ccccCCCCCCceeeEEEEEc-CCCC--------HHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceE
Q psy9573 704 P-----NYIQISKFPNVVRDIVFIFN-KNIN--------LQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKS 769 (809)
Q Consensus 704 ~-----~~~~~skfP~~~RDlS~vv~-~~~~--------~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkS 769 (809)
+ .|.++|+||+++|||||+|| ++++ +++|+++|++.+ .+++|.|||+|+|+++++|+||
T Consensus 352 ~DIR~~~~~dISRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~a~-------gLesV~LFDVYeGe~I~eGKKS 424 (685)
T 2odr_D 352 ADVREMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK-------DLKSPCELAIEKTFSFGKTKKN 424 (685)
T ss_dssp SCHHHHHCGGGSCCCCCHHHHHHHEECSSCC-------------------------------------------------
T ss_pred CcccccccCCcCCCCcccccEEEEECHHHCCcccccchHHHHHHHHHHHcC-------CCCeEEEEEEEcCCCCCCCceE
Confidence 2 68999999999999999999 8888 999999999875 4899999999999999999999
Q ss_pred EEEEEEEeCCCCCCCH
Q psy9573 770 FAFRCILQDPKKTLKN 785 (809)
Q Consensus 770 l~~rl~~~~~~rTLt~ 785 (809)
|||+++||+.+|-|-.
T Consensus 425 LAfsLtfr~~drkl~g 440 (685)
T 2odr_D 425 VKINIFEKEEGKNLLG 440 (685)
T ss_dssp ----------------
T ss_pred EEEEEEEECCCCCcCC
Confidence 9999999999987643
No 11
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=5.6e-46 Score=423.17 Aligned_cols=282 Identities=14% Similarity=0.153 Sum_probs=192.8
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhh-cCC-CCCC-cEEeeCCC---------
Q psy9573 478 NIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDF-SQN-INNY-PIELLNPI--------- 544 (809)
Q Consensus 478 nip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~-~~~-~~~~-~i~L~NPi--------- 544 (809)
+|+.+.|......+...+..++.+++|+++.++||+|+.++.+++.... ..+ .+. ...+ .+.|.||.
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~ 128 (701)
T 2odr_C 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (701)
T ss_dssp CTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 4556666554455667788889999999999999999999999988764 222 111 0012 67788874
Q ss_pred ----------------------------------------------------------Cc---------cccccchhhHH
Q psy9573 545 ----------------------------------------------------------SK---------KFNTMRSTLIG 557 (809)
Q Consensus 545 ----------------------------------------------------------s~---------e~s~lR~SLlp 557 (809)
+. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (701)
T 2odr_C 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (701)
T ss_dssp -------------------------------------------------------------CCCCCCEEEEEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 11 48999999999
Q ss_pred HHHHHHHHHhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHH
Q psy9573 558 SLVNNICYNLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLEN 636 (809)
Q Consensus 558 gLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ 636 (809)
|||.++++|++|+.+++++||+|+||++++. + .+++.|..+++++++|. .+||||+||+|+.
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lD------ath~~EfhqLeGlv~G~-----------~vDF~DLKGvLE~ 271 (701)
T 2odr_C 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED------KSHLMTYHSASCAIAGE-----------GVDINDGKAIAEG 271 (701)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCC------SSCCSEEEEEEEEEECT-----------TCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeeEEccCcccc------ccCCCcceEEEEEEECC-----------CCCHHHHHHHHHH
Confidence 9999999999999999999999999986542 2 23567999999999993 6899999999999
Q ss_pred HHHhcCC---eeeecc--CCCCcCccEEEEEEC-----C-EEEEEEEeecHHHHHhCCCCCceEEEEeehHHHhccc--C
Q psy9573 637 LFFPIKL---NFLKIN--NSILHPNRSALIFKK-----T-KNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQ--I 703 (809)
Q Consensus 637 ll~~lgi---~~~~~~--~~~~hPgrsA~I~~~-----g-~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~~~~--~ 703 (809)
+++.+|+ +|++.. +++||||++|+|.++ | +.||++|+|||+++++|||+.++|+|||+|++|.+.. .
T Consensus 272 LL~~LGi~~vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AFELgLErLamlk~gi 351 (701)
T 2odr_C 272 LLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNLGLGVERLAMISGNF 351 (701)
T ss_dssp HHHTTTCCCEEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEEEEEHHHHHHHHTTC
T ss_pred HHHHcCCCeEEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEEEEeHHHHHHHhcCC
Confidence 9999986 466653 688999999999985 4 7999999999999999999999999999999997422 2
Q ss_pred C-----ccccCCCCCCceeeEEEEEc-CCCC--------HHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceE
Q psy9573 704 P-----NYIQISKFPNVVRDIVFIFN-KNIN--------LQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKS 769 (809)
Q Consensus 704 ~-----~~~~~skfP~~~RDlS~vv~-~~~~--------~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkS 769 (809)
+ .|.++|+||+++|||||+|| ++++ +++|+++|++.+ .+++|.|||+|+|+++++|+||
T Consensus 352 ~DIR~~~~~dISRFPaV~RDIAlVVd~~~Vp~~v~~~~~a~eI~~~Ir~a~-------gLesV~LFDVYeGe~I~eGKKS 424 (701)
T 2odr_C 352 ADVREMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDLTKELIESCVKNK-------DLKSPCELAIEKTFSFGKTKKN 424 (701)
T ss_dssp SCHHHHHCGGGSCCCCCHHHHHHHBCCSSCC-------------------------------------------------
T ss_pred CcccccccCCcCCCCccccCEEEEECHHHCCcccccchHHHHHHHHHHHcC-------CCCeEEEEEEEcCCCCCCCceE
Confidence 2 68999999999999999999 8888 999999999875 4899999999999999999999
Q ss_pred EEEEEEEeCCCCCC
Q psy9573 770 FAFRCILQDPKKTL 783 (809)
Q Consensus 770 l~~rl~~~~~~rTL 783 (809)
|||+++||+.+.-|
T Consensus 425 LAfsLtfr~~d~kl 438 (701)
T 2odr_C 425 VKINIFEKEEGKNL 438 (701)
T ss_dssp --------------
T ss_pred EEEEEEEECCCcCc
Confidence 99999999988644
No 12
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=100.00 E-value=5e-45 Score=375.57 Aligned_cols=203 Identities=21% Similarity=0.347 Sum_probs=172.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
.+++.+++|+.|+++||+|++||||++++.++.+......+.|+|+||+|+|+++||+||+||||+++++|++|++++++
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~ 85 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLY 85 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCee
Confidence 56789999999999999999999999998777664211146799999999999999999999999999999999999999
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe-----eeeccC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN-----FLKINN 650 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~-----~~~~~~ 650 (809)
+||+|+||.+++....+.....++.|..+||++++|...+.+|..+.+.+||||+||+|+.++..+|+. +++..+
T Consensus 86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~~~~~ 165 (213)
T 3ica_A 86 LFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTADN 165 (213)
T ss_dssp EEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEEECCC
T ss_pred EEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEeeccC
Confidence 999999998764210000000134789999999999999999999999999999999999999999874 456778
Q ss_pred CCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHh
Q psy9573 651 SILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQ 699 (809)
Q Consensus 651 ~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~ 699 (809)
++|||||+|. +++|+.||++|+|||+++++|||+.|||+|||||+.|.
T Consensus 166 ~~~hpgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~Eldl~~l~ 213 (213)
T 3ica_A 166 DLYASAMEVK-TRSGKLLGTFGTVSTELIKRFEIEQPVYFAELLWDALM 213 (213)
T ss_dssp TTEEEEEEEE-ETTCCEEEEEEEECHHHHHHTTCCSCEEEEEEEHHHHC
T ss_pred CCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCCCCCeEEEEEEhHHhC
Confidence 9999999999 88999999999999999999999999999999999873
No 13
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=100.00 E-value=5.2e-45 Score=375.40 Aligned_cols=204 Identities=21% Similarity=0.332 Sum_probs=167.5
Q ss_pred cchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 495 EGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 495 ~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
..+++.+++|+.|+++||+|++||||++++.++.+......+.|+|+||+|+|+++||+||+||||+++++|++|+++++
T Consensus 5 ~~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 5 KSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 46789999999999999999999999999877766421114679999999999999999999999999999999999999
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe-----eeecc
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN-----FLKIN 649 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~-----~~~~~ 649 (809)
++||+|+||.+++....+.....++.|..+||++++|...+.+|..+.+.+||||+||+|++++..+|+. +++..
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~~~~ 164 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVGNLS 164 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEEEEC
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEeecc
Confidence 9999999999764210000000135799999999999999999999889999999999999999999864 56778
Q ss_pred CCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehHHHh
Q psy9573 650 NSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQ 699 (809)
Q Consensus 650 ~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~~L~ 699 (809)
+++|||||+|. +++|+.||++|+|||+++++|||+.|||+|||||+.|.
T Consensus 165 ~~~~hPgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~Eldl~~l~ 213 (213)
T 3ig2_A 165 DDIYSTALTVN-TKGGKRLATFGVVTKKMLKAFDVDNEVYYADLNWKELM 213 (213)
T ss_dssp SSSEEEEEEEE-CTTCCEEEEEEEECHHHHHHTTCCEEEEEEEEETGGGC
T ss_pred CCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCcCCCeEEEEEEhHHhC
Confidence 89999999999 89999999999999999999999999999999999873
No 14
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00 E-value=1.2e-42 Score=394.48 Aligned_cols=289 Identities=15% Similarity=0.156 Sum_probs=230.0
Q ss_pred CccCCCCcchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHH---H-----
Q psy9573 455 AHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSL---E----- 526 (809)
Q Consensus 455 ~~R~DI~~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~---~----- 526 (809)
.-|.||++++|++|||||+||||++|++.+ ...+..++.+++.+++|+.|+++||+|++||+|++++. +
T Consensus 11 ~tR~Di~~~~DliEEvaR~yGyd~i~~~~~---~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n~p~~~Hpa 87 (534)
T 2du3_A 11 LAEKDFEAAWKAGKEILAERSPNELYPRVG---FSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREA 87 (534)
T ss_dssp HHHHCHHHHHHHGGGGSCCCCGGGSTTSSC---CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGH
T ss_pred CChhhcchhhHHHhhhhhccCCCCCCCccC---CCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhcccccccch
Confidence 358999999999999999999999998762 23455677888999999999999999999999999976 3
Q ss_pred ----h-hhcCCC------------------------------------------CCC---------------cEEeeCCC
Q psy9573 527 ----K-DFSQNI------------------------------------------NNY---------------PIELLNPI 544 (809)
Q Consensus 527 ----~-~~~~~~------------------------------------------~~~---------------~i~L~NPi 544 (809)
+ .|.... ..+ .++++||+
T Consensus 88 r~~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPi 167 (534)
T 2du3_A 88 LAVLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEV 167 (534)
T ss_dssp HHHHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTT
T ss_pred hhhccceeeccCcccccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCC
Confidence 2 221000 001 16899999
Q ss_pred Ccc---------ccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCC-CCCCCCccCCccceeEEeEeeeCCCC
Q psy9573 545 SKK---------FNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKF-IKDSPFTVSGYKELKKIAVIAYGPLL 614 (809)
Q Consensus 545 s~e---------~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~-~~~~~~~~~~~~E~~~l~~~~~G~~~ 614 (809)
|+| +++|||||+||||+++++|++|+.+++++||+|+||+++.. + .++..|..+++++++|.
T Consensus 168 s~e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d------~th~~Ef~qLagli~G~-- 239 (534)
T 2du3_A 168 FPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGED------ATRLYTYFSASCVLVDE-- 239 (534)
T ss_dssp CTTTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCS------SSCCSEEEEEEEEEECS--
T ss_pred ChhhccccccccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCcccc------ccccceeeEEEEEEECC--
Confidence 999 89999999999999999999998889999999999987542 2 23568999999999993
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhcCC---eeeeccCC--CCcCccEEEEEE-------------CC-EEEEEEEeec
Q psy9573 615 EPQWGEENRNIDYFDLKNDLENLFFPIKL---NFLKINNS--ILHPNRSALIFK-------------KT-KNIGFIGEIH 675 (809)
Q Consensus 615 ~~~w~~~~~~~df~dlKg~le~ll~~lgi---~~~~~~~~--~~hPgrsA~I~~-------------~g-~~iG~iGelh 675 (809)
.+|||++||+++.+++.+|+ .|++.+++ +||||++|+|++ +| ..||++|++|
T Consensus 240 ---------~vdf~dLKgilE~LL~~LGi~~~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vh 310 (534)
T 2du3_A 240 ---------ELSVDDGKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYS 310 (534)
T ss_dssp ---------SCCHHHHHHHHHHHHGGGTCCEEEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBC
T ss_pred ---------CCCHHHHHHHHHHHHHHcCCCeEEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEEC
Confidence 67999999999999999996 36666666 599999999988 57 7999999999
Q ss_pred HHHHHhCCCCCceEEEEeehHHHhcc--cC--------Ccc--ccCCCCCCceeeEEEEEcCCCC--------HHHHHHH
Q psy9573 676 PILQQKYDLPLAPIFFEVDALELQKR--QI--------PNY--IQISKFPNVVRDIVFIFNKNIN--------LQDVMDT 735 (809)
Q Consensus 676 P~vl~~~~i~~~v~~~El~l~~L~~~--~~--------~~~--~~~skfP~~~RDlS~vv~~~~~--------~~~i~~~ 735 (809)
|+++++|||+.++++|||+|++|.+. .. +.. +-+++|+.+.|++++ +.++ +.+|++.
T Consensus 311 P~VL~~~gi~~~v~afeLgLErLaMl~~gi~DIR~~~~~d~~~rfl~qf~~i~~~~~~---~~~P~~~~~~~~~~~i~~~ 387 (534)
T 2du3_A 311 PTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKMVYPQIHGEIKLSDLDIAREIKV---KEVPQTAVGLKIAQSIVET 387 (534)
T ss_dssp HHHHHTTTCCSCEEEEEEEHHHHHHHHTTCSCHHHHHCTTTTTCCCCCHHHHHHHCEE---SSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcEEEEEecHHHHHHhhcCCchhhhhhcccccHhHHhhhhhhhcCccH---hhCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999741 11 112 344555556666665 6666 5666666
Q ss_pred HHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEE
Q psy9573 736 MFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCIL 776 (809)
Q Consensus 736 i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~ 776 (809)
+.+.+. ..+...||+|+|+.++ |.+-+.++=
T Consensus 388 ~~~~~~-------~~~~~~f~~~~g~~~~---~~~~~~~~~ 418 (534)
T 2du3_A 388 AEKHAS-------EPSPCSFLAFEGEMMG---RNVRVYVVE 418 (534)
T ss_dssp HHHSSS-------CBSSEEEEEEEEESSS---SEEEEEEEE
T ss_pred HHHhCC-------CCCCcEEEEEecccCC---cEEEEEEEc
Confidence 666543 3589999999999864 345555543
No 15
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=100.00 E-value=2.9e-38 Score=340.17 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=177.3
Q ss_pred cchhhhhhhhhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH--hhh-cCCC-----
Q psy9573 462 IEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE--KDF-SQNI----- 533 (809)
Q Consensus 462 ~~~DliEEIaR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~--~~~-~~~~----- 533 (809)
-++||||||+|+|||||||.++|......+..++.+++.+++|++|+++||+|+ +|+|++++.. +.+ .+..
T Consensus 21 ~~~DliEEv~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~ 99 (294)
T 2rhq_A 21 MGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARD 99 (294)
T ss_dssp ----CTTHHHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGGC
T ss_pred CcchHHHHHHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCccccc
Confidence 467999999999999999999996655566677888899999999999999999 9999998754 233 2220
Q ss_pred CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCC
Q psy9573 534 NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPL 613 (809)
Q Consensus 534 ~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~ 613 (809)
..+.+.|. |+++|||||+|+|++++++|+ +.+++++||+|+||++++.+ .++..|..+|+++++|
T Consensus 100 ~~d~~~l~-----e~~vLRtsl~p~ll~~l~~N~--~~~~~riFEiG~Vfr~d~~d------~~h~~Ef~~Le~~~~g-- 164 (294)
T 2rhq_A 100 MQDSFYIT-----DEILMRTHTSPVQARTMEKRN--GQGPVKIICPGKVYRRDSDD------ATHSHQFTQIEGLVVD-- 164 (294)
T ss_dssp TTTSCBSS-----SSEEECSSSHHHHHHHHHHTT--TCSCEEEEEEEEEECCCCCB------TTBCSEEEEEEEEEEE--
T ss_pred cCCcEEEc-----CcceeeccCHHHHHHHHHhcC--CCCCccEEEEcCEEecCCCC------CCCCChhhEEEEEEEC--
Confidence 01245552 899999999999999999998 46789999999999875422 1245699999999999
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhc-CC----eeeeccCCCCcCccEEEEEE---CC-----------EEEEEEEee
Q psy9573 614 LEPQWGEENRNIDYFDLKNDLENLFFPI-KL----NFLKINNSILHPNRSALIFK---KT-----------KNIGFIGEI 674 (809)
Q Consensus 614 ~~~~w~~~~~~~df~dlKg~le~ll~~l-gi----~~~~~~~~~~hPgrsA~I~~---~g-----------~~iG~iGel 674 (809)
..+|||++||+|+.+++.+ |+ .|++..+|++|||++|+|++ +| +.||++|+|
T Consensus 165 ---------~~~df~dlKg~le~ll~~l~g~~~~~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~v 235 (294)
T 2rhq_A 165 ---------KNIKMSDLKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMV 235 (294)
T ss_dssp ---------SSCCHHHHHHHHHHHHHHHHCTTCCEEEEECCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEE
T ss_pred ---------CCCCHHHHHHHHHHHHHHHhCCCcEEEEecCcCCCCCCcEEEEEEEEccCCcccccccCCCCeEEEEEeeE
Confidence 3689999999999999988 74 56667789999999999999 66 589999999
Q ss_pred cHHHHHhCCCCC---ceEEEEeehHHHhc
Q psy9573 675 HPILQQKYDLPL---APIFFEVDALELQK 700 (809)
Q Consensus 675 hP~vl~~~~i~~---~v~~~El~l~~L~~ 700 (809)
||+|+++|||+. ++|+|||+|++|.+
T Consensus 236 hP~Vl~~~gl~~~~~~~~afel~le~L~m 264 (294)
T 2rhq_A 236 HPNVLEMAGFDSNEYSGFAFGMGPDRIAM 264 (294)
T ss_dssp CHHHHHTTTCCTTTCEEEEEEECHHHHHH
T ss_pred CHHHHHHcCCCCCcCeEEEEEEeHHHHHH
Confidence 999999999985 89999999999864
No 16
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=100.00 E-value=4e-37 Score=307.11 Aligned_cols=127 Identities=26% Similarity=0.526 Sum_probs=121.1
Q ss_pred HHHHHHHHHhcCceeeeEEecCCCCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCce
Q psy9573 18 SNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSS 97 (809)
Q Consensus 18 ~~el~~~Lt~~G~EVe~v~~~~~~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~ 97 (809)
+++|+++||++|+||| ++.. .+++++||+|++|+|||+||||++|+||+|++++||||||+|+++|++|++|++||+
T Consensus 69 ~~~l~~~Lt~~G~Eve-v~~~--~~~~vvVG~V~~~e~hP~ADkL~v~~VdvG~~~~qIV~Ga~n~~~G~kVvva~~Ga~ 145 (199)
T 3bu2_A 69 VQAFQKAIEAAGFTYK-LDAD--FTPKFVVGYVETKDKHPDADKLSVLSVDVATEKLQIVCGAPNVEAGQKVVVAKVGAV 145 (199)
T ss_dssp HHHHHHHHHHTTCCCC-CCCC--CCCSEEEEEEEEEEECTTTSSCEEEEEECSSCEEEEEECCTTCCTTCEEEEECTTCB
T ss_pred HHHHHHHHHhCCCeEE-EEEc--CCCCeEEEEEEEEEECCCCCEEEEEEEEeCCEEEEEEeCCchhhCCCEEEEEecCCC
Confidence 8899999999999998 7766 368999999999999999999999999999888999999999999999999999999
Q ss_pred ecCcccCCceEEeeceecceeccCcccCccccCCCC--CCCceEEcCCCCCCCCchh
Q psy9573 98 LLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINN--KNKYLFELPEDAPIGKNFY 152 (809)
Q Consensus 98 lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~--~~~GI~~l~~~~~~G~~~~ 152 (809)
||+ +++||++||||++|+|||||++|||+++ +++||++||+++++|+++.
T Consensus 146 lp~-----g~nIk~~KlrGv~S~GMlcSa~ELGl~~~~~~~gI~~l~~~~~~G~~v~ 197 (199)
T 3bu2_A 146 MPS-----GMVIKDAELRGVASSGMICSMKELGLPNAPQEKGIMVLSDDYTVGQSFF 197 (199)
T ss_dssp CTT-----SCBCCEEEETTEEEESEECCTTTTTCSSCBSCCSCCEECTTSCTTSBSB
T ss_pred ccC-----CceEeeeEEcCceeccEEeehhhcCCCcccCCCeEEECCCCCCCCCccc
Confidence 998 8999999999999999999999999998 7899999999999999884
No 17
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.96 E-value=4.4e-29 Score=268.54 Aligned_cols=202 Identities=13% Similarity=0.091 Sum_probs=164.6
Q ss_pred cCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCc------cccccchhhHHHHHHH
Q psy9573 489 KISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISK------KFNTMRSTLIGSLVNN 562 (809)
Q Consensus 489 ~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~------e~s~lR~SLlpgLL~~ 562 (809)
..+..++.+++.+.+|+.|.+.||+|+.||+|++.+....++.. . .||+++ +..+||+|++|+|+++
T Consensus 72 ~~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~--~-----~~p~~~~~~~~~~~~~LR~slsp~L~~~ 144 (290)
T 3qtc_A 72 AEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGID--N-----DTELSKQIFRVDKNFCLRPMLTPNLYNY 144 (290)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCC--T-----TSSGGGGCCEETTTEEECSCSHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCC--c-----CCchhhhheeeCCCeeEcccChHHHHHH
Confidence 34555667889999999999999999999999999876655432 1 255555 7999999999999999
Q ss_pred HHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcC
Q psy9573 563 ICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK 642 (809)
Q Consensus 563 l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lg 642 (809)
+++|.++...++|+||+|+||+.++.. .....|.+++++.++|. ..+|+++||+++.+++.+|
T Consensus 145 l~~n~~~~~~p~rlfeiG~vFR~E~~~------~~~~~Ef~ql~~~~~g~-----------~~~f~elkg~le~ll~~lG 207 (290)
T 3qtc_A 145 LRKLDRALPDPIKIFEIGPCYRKESDG------KEHLEEFTMLVFWQMGS-----------GCTRENLESIITDFLNHLG 207 (290)
T ss_dssp HHHHTTTSCSSEEEEEEEEEECCCSCS------SSCCSEEEEEEEEEEST-----------TCCHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCCCeEEEEEcCEEecCCCC------CcCcchheEEEEEEEcC-----------ChHHHHHHHHHHHHHHHcC
Confidence 999998888889999999999875432 23568999999999994 3589999999999999999
Q ss_pred CeeeeccCCCCcCccEEEEEECCEEEEEEEeecHHHH-HhCCCCCceEEEEeehHHHhc--ccCCccccCCCCCCc
Q psy9573 643 LNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQ-QKYDLPLAPIFFEVDALELQK--RQIPNYIQISKFPNV 715 (809)
Q Consensus 643 i~~~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl-~~~~i~~~v~~~El~l~~L~~--~~~~~~~~~skfP~~ 715 (809)
+.|.-.+++++||||+|+|+++|+.||+ |+|||+++ ++|||+.|+|+|||||++|.+ ...+..+.+|+.-+.
T Consensus 208 l~~~~~~~~~~hpgr~a~i~~~~~~iG~-G~lhP~vl~~~~~i~~~v~~~el~le~l~~~~~~~~dir~~~~~~~~ 282 (290)
T 3qtc_A 208 IDFKIVGDSCMVFGDTLDVMHGDLELSS-ALVGPIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAARSESY 282 (290)
T ss_dssp CCCEEEC------CEEEEEEETTEEEEE-EEESCCGGGGGGTCCSCEEEEEEEHHHHHHHHHTCSSGGGGSSCSSE
T ss_pred CCcEEeCCCccccCCcccEeeCCEEEEE-EEecHHHHHHhCCCCCceEEEEECHHHHHHHHcCCcHHHHHhcchhh
Confidence 8665457789999999999999999999 99999999 899999999999999999975 345666777766553
No 18
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.96 E-value=1.5e-28 Score=268.64 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=169.7
Q ss_pred CCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH--hhh-cCCC-----CCCcEEeeCCCC---
Q psy9573 477 ENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE--KDF-SQNI-----NNYPIELLNPIS--- 545 (809)
Q Consensus 477 dnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~--~~~-~~~~-----~~~~i~L~NPis--- 545 (809)
++||.++|......+..++.+++.+++|++|+++||+|+. |+++..+.. +.+ .+.. ..+.+.|.||+|
T Consensus 84 ~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~ 162 (350)
T 1b7y_A 84 ERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLE 162 (350)
T ss_dssp --CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCB
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCcccccc
Confidence 5889888865555566778888999999999999999999 899987654 333 2210 135689999999
Q ss_pred -------ccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCC
Q psy9573 546 -------KKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQW 618 (809)
Q Consensus 546 -------~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w 618 (809)
+++++||+|++|+++++++++ .+++++||+|+||++++.+ .++..|..+++++++|.
T Consensus 163 ~~~~~~~~~~~vLRt~tsp~llr~l~~~----~~piriFEiGrVFR~d~~d------~tH~pEF~qlegl~~g~------ 226 (350)
T 1b7y_A 163 GPLGEEVEGRLLLRTHTSPMQVRYMVAH----TPPFRIVVPGRVFRFEQTD------ATHEAVFHQLEGLVVGE------ 226 (350)
T ss_dssp CTTSCBCCSCEEECSSSTHHHHHHHHHC----CSSEEEEEEEEEECCCCCC------SSCCSEEEEEEEEEEET------
T ss_pred ccccccccccceeeccchHHHHHHHHhc----CCCeeEEEeeeEEECCCCC------CCCCChhHEEEEEEECC------
Confidence 699999999999999999983 4679999999999976422 24668999999999993
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhc-CC----eeeeccCCCCcCccEEEEEE--CC--EEEEEEEeecHHHHHhC-------
Q psy9573 619 GEENRNIDYFDLKNDLENLFFPI-KL----NFLKINNSILHPNRSALIFK--KT--KNIGFIGEIHPILQQKY------- 682 (809)
Q Consensus 619 ~~~~~~~df~dlKg~le~ll~~l-gi----~~~~~~~~~~hPgrsA~I~~--~g--~~iG~iGelhP~vl~~~------- 682 (809)
.+||+++||+|+.+++.+ |. +|+++.+|++|||++++|++ +| ..||++|+|||+|++++
T Consensus 227 -----~v~f~dLKg~le~ll~~lfG~~~~~r~rps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~VhP~Vl~~~~~~~~~~ 301 (350)
T 1b7y_A 227 -----GIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERL 301 (350)
T ss_dssp -----TCCHHHHHHHHHHHHHHHSCSSCCEEEEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHHhhcCCCceEEEecCCCCCCCCccEEEEEEEeCCCeEEEEEEEEEeHHHHHhhccccccC
Confidence 689999999999999987 73 57788889999999999998 88 68999999999999999
Q ss_pred CCCC-----ceEEEEeehHHHhc
Q psy9573 683 DLPL-----APIFFEVDALELQK 700 (809)
Q Consensus 683 ~i~~-----~v~~~El~l~~L~~ 700 (809)
||+. ++|+|||+|++|..
T Consensus 302 gid~~~~~~~~~afglglerl~m 324 (350)
T 1b7y_A 302 GLPPAYRGVTGFAFGLGVERLAM 324 (350)
T ss_dssp TCCCCCTTCEEEEEEEEHHHHHH
T ss_pred CCCCccccceEEEEEEeHHHHHH
Confidence 9975 79999999999974
No 19
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.95 E-value=6e-27 Score=264.97 Aligned_cols=208 Identities=14% Similarity=0.208 Sum_probs=173.4
Q ss_pred hhhhccCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHH--Hhhhc-CC-----CCCCcEEeeC
Q psy9573 471 IRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSL--EKDFS-QN-----INNYPIELLN 542 (809)
Q Consensus 471 aR~yGydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~--~~~~~-~~-----~~~~~i~L~N 542 (809)
.|-|+|+......+ .+..++.+++.+++|++|.++||+|++|++++..+. .+.++ |. +..+.+.|.|
T Consensus 207 f~~y~~~~~g~~~~-----~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~ 281 (508)
T 3l4g_A 207 FKPYNFLAHGVLPD-----SGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRD 281 (508)
T ss_dssp CCCCCSSSCCCCCC-----CCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBST
T ss_pred ceecccCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcC
Confidence 47899988765443 355678889999999999999999999866665543 23332 22 1234589999
Q ss_pred CCCc----------------------------------cccccchhhHHHHHHHHHHHhc-CCCCCeeEEEEeeEEecCC
Q psy9573 543 PISK----------------------------------KFNTMRSTLIGSLVNNICYNLK-RKLERIRLFEIANVYLHDK 587 (809)
Q Consensus 543 Pis~----------------------------------e~s~lR~SLlpgLL~~l~~N~~-~~~~~i~lFEiG~Vf~~~~ 587 (809)
|++. +.++|||+++|++++++++|.+ ++.+++|+||+|+||+++.
T Consensus 282 P~~~~~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~ 361 (508)
T 3l4g_A 282 PAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNET 361 (508)
T ss_dssp TCBCSCCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSC
T ss_pred ccccccccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCC
Confidence 9865 5899999999999999999998 6778899999999999875
Q ss_pred CCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC---eeeeccCCCCcCccEEEEEEC
Q psy9573 588 FIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL---NFLKINNSILHPNRSALIFKK 664 (809)
Q Consensus 588 ~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi---~~~~~~~~~~hPgrsA~I~~~ 664 (809)
.+ .++..+..+++++++| ..++|+++||+|+.+++.+|+ .|+++.+|++||+..+.++++
T Consensus 362 ~D------atHlpeFhQlegl~~~-----------~~v~f~dLKg~Le~~l~~lG~~~~rfrps~fPftePS~ev~i~~~ 424 (508)
T 3l4g_A 362 LD------ATHLAEFHQIEGVVAD-----------HGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQ 424 (508)
T ss_dssp CC------SSSCSEEEEEEEEEEE-----------ESCCHHHHHHHHHHHHHTTTCCCCEEEECCCTTCSSEEEEEECCS
T ss_pred CC------CCcCCeEEEEEEEEEC-----------CCCCHHHHHHHHHHHHHHcCCcceEeeccCCCCCCCeEEEEEEEC
Confidence 43 3566789999999987 468999999999999999985 578888999999999988888
Q ss_pred C----EEEEEEEeecHHHHHhCCCC--CceEEEEeehHHHhc
Q psy9573 665 T----KNIGFIGEIHPILQQKYDLP--LAPIFFEVDALELQK 700 (809)
Q Consensus 665 g----~~iG~iGelhP~vl~~~~i~--~~v~~~El~l~~L~~ 700 (809)
| ..||.+|+|||+|++++||+ .++|+|||+|++|.+
T Consensus 425 G~~~W~EIGg~G~vhP~VL~~~Gipe~~~v~AfgLgLeRLam 466 (508)
T 3l4g_A 425 GLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTM 466 (508)
T ss_dssp TTSSCEEEEEEECCCHHHHGGGTCCTTEEEEEEEEESHHHHT
T ss_pred CccceEEEEeeeeEcHHHHHHCCCCCCceEEEEEecHHHHHH
Confidence 8 69999999999999999997 489999999999974
No 20
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.94 E-value=4.2e-27 Score=254.29 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=161.4
Q ss_pred cCCCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHH-Hhhhc-CCCC-----CCcEEeeCCCCccc
Q psy9573 476 FENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSL-EKDFS-QNIN-----NYPIELLNPISKKF 548 (809)
Q Consensus 476 ydnip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~-~~~~~-~~~~-----~~~i~L~NPis~e~ 548 (809)
=++||.++|......+..++.+++.+++|++|+++||+|+.+|.+.+... .+.++ +.+. .+.+.| + ++
T Consensus 89 ~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i----~-e~ 163 (327)
T 3pco_A 89 AETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF----D-TT 163 (327)
T ss_dssp TTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS----S-SS
T ss_pred hCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe----C-CC
Confidence 47899999987777788889999999999999999999999988766543 23332 2200 012223 2 78
Q ss_pred cccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHH
Q psy9573 549 NTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYF 628 (809)
Q Consensus 549 s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~ 628 (809)
++||||++|++++++++| .+++++||+|+||+++.. .++..+..++.+++.| ..+||+
T Consensus 164 ~vLRThtsp~~lr~l~~~----~~pirifeiGrVyR~d~d-------~th~p~fhqlegl~v~-----------~~v~f~ 221 (327)
T 3pco_A 164 RLLRTQTSGVQIRTMKAQ----QPPIRIIAPGRVYRNDYD-------QTHTPMFHQMEGLIVD-----------TNISFT 221 (327)
T ss_dssp CEECSCTHHHHHHHHTTC----CSSCCBCCEECCBCSCCB-------TTBCSBCCEEEEEEEE-----------TTCCHH
T ss_pred ceecccCCHHHHHHHHhC----CCCeeEEeeccEEecCCC-------cccCCcccEEEEEEEC-----------CCCCHH
Confidence 999999999999999764 467999999999997632 2345566778888887 468999
Q ss_pred HHHHHHHHHHHhc-C----CeeeeccCCCCcCccEEEEEE-CCE--EEEEEEeecHHHHHhCCCCCc---eEEEEeehHH
Q psy9573 629 DLKNDLENLFFPI-K----LNFLKINNSILHPNRSALIFK-KTK--NIGFIGEIHPILQQKYDLPLA---PIFFEVDALE 697 (809)
Q Consensus 629 dlKg~le~ll~~l-g----i~~~~~~~~~~hPgrsA~I~~-~g~--~iG~iGelhP~vl~~~~i~~~---v~~~El~l~~ 697 (809)
++||+|+.+++.+ | ++|+++..|++|||++|+|++ +|+ .||++|+|||+|++++||+.+ +|+||+++++
T Consensus 222 dLKg~Le~~l~~lfg~~~~vr~rps~fPftePs~eadI~~~~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AFglgleR 301 (327)
T 3pco_A 222 NLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMER 301 (327)
T ss_dssp HHHHHHHHHHHHHHCSCSEEEEEEECCTTEEEEEEEEEECSSSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCcCCCCCCcEEEEEEEeCCCeEEEEEEEEECHHHHHHcCCCCccceEEEEEechHH
Confidence 9999999999988 3 367888899999999999999 775 899999999999999999864 9999999999
Q ss_pred Hhc
Q psy9573 698 LQK 700 (809)
Q Consensus 698 L~~ 700 (809)
|..
T Consensus 302 lam 304 (327)
T 3pco_A 302 LTM 304 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 21
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=99.94 E-value=1e-27 Score=244.57 Aligned_cols=127 Identities=18% Similarity=0.284 Sum_probs=112.4
Q ss_pred HHHHhhccCC-CCC--------HHHHHHHHHhcCceeeeEEecCCCC-----CCeEEEEEEEEeeCCCCCceeEEEEecC
Q psy9573 5 ENWLRTIINP-KLS--------SNDLANLLTMSGLETEKIETNIPIF-----SKIIIGKIINIIKHPDIDNFNICKVDTY 70 (809)
Q Consensus 5 ~~WL~e~v~~-~~~--------~~el~~~Lt~~G~EVe~v~~~~~~~-----~~vvvg~i~~~~~hp~ad~L~~~~v~~g 70 (809)
.+||++|+|. +.| .++++.+|+.+|+|||. ..+++.- -.++||+|++|++||+||||++|+||+|
T Consensus 85 ~~Wl~~~l~~~~~~~~~k~~~~~~~i~~~L~~lg~evE~-~~~g~~~~~f~kldirVGkIl~ve~hP~AdKL~v~~VD~G 163 (241)
T 2e8g_A 85 EDWHHKFLSQASREDREKVEEQVARIKFFLNTILNLDRR-LKLGKINDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIG 163 (241)
T ss_dssp TTHHHHHHHTCSSTHHHHHHHHHHHHHHHHHHHHTHHHH-HTTCSCCCGGGGSCEEEEEEEEEEECTTCTTCEEEEEECS
T ss_pred hhHHHHhcCccccchhhcccccHHHHHHHHHHhccchhh-hhcCCccCcccccCEEEEEEEEEEECCCCCccEEEEEEeC
Confidence 5899999998 465 89999999999999998 3444321 1699999999999999999999999999
Q ss_pred CceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcccCccccCCCCCCCc-eEEcCCCCCCC
Q psy9573 71 KNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKY-LFELPEDAPIG 148 (809)
Q Consensus 71 ~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlcs~~eLGl~~~~~G-I~~l~~~~~~G 148 (809)
++.+||||||+|+++|++|+||. ++++++||+.|+||+||+.| |+.++++| |++||++.|.+
T Consensus 164 ~~~rqIV~Ga~n~~~G~vVvVAn---------------Lpp~klrGv~SeGMlcsa~E-gl~~~~~G~I~~Lp~~~p~~ 226 (241)
T 2e8g_A 164 ERAVTVVTNDLTVKEGNRVAVAL---------------LPPRNFFGIVSEGMFLGAGE-GVLKNVKGEIGGLPKGIPLE 226 (241)
T ss_dssp SCEEEEEESCTTCCTTCEEEEEC---------------CCCEEETTEEECCEECEETT-EECCBCBSCTTSCCBSCCGG
T ss_pred CceEEEEECCccccCCCEEEEEE---------------CCCcccCCcccCcEEeECcc-CCCCCCCCcEEECCCCCchh
Confidence 98899999999999999999985 45789999999999999999 99999999 99998776653
No 22
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.92 E-value=1.3e-24 Score=232.75 Aligned_cols=207 Identities=11% Similarity=0.049 Sum_probs=167.7
Q ss_pred CCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC
Q psy9573 490 ISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR 569 (809)
Q Consensus 490 ~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~ 569 (809)
.+...+.+++.+.+|+.|.++||+|+.||+|.+.+.....+.....+.+.+.||+++++ +|||++.|+++.++++|.++
T Consensus 67 ~g~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~-~LRp~l~p~l~~~~r~~~~~ 145 (288)
T 3dsq_A 67 VKHRPALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKK-CLRPMLAPNLYTLWRELERL 145 (288)
T ss_dssp TTSSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTE-EECSCSHHHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccch-hhhhcChHHHHHHHHHHHhC
Confidence 45556678899999999999999999999999998766553221113567889999776 99999999999999999887
Q ss_pred CCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC-eeeec
Q psy9573 570 KLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL-NFLKI 648 (809)
Q Consensus 570 ~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi-~~~~~ 648 (809)
+..++|+||+|+||+.+..+ ..+..|..++++.+.|.. ..++|+++||+++.+++.+|+ .|.-.
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~------~~r~~EF~qle~~i~g~~---------~~~~f~elkg~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQG------AQHLNEFTMLNLTELGTP---------LEERHQRLEDMARWVLEAAGIREFELV 210 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSS------SCCCSEEEEEEEEEETCC---------GGGHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCCCEEEEEEeeEEecCCCC------CCcCccEEEEEEEEEcCC---------chhhHHHHHHHHHHHHHHcCCCCcEEe
Confidence 77789999999999876532 235579999999999942 357899999999999999998 34332
Q ss_pred cCCCCcCccEEEEEECCEEEEEEEeecHHHH-HhCCCCCceEEEEeehHHHhc--ccCCccccCCCCC
Q psy9573 649 NNSILHPNRSALIFKKTKNIGFIGEIHPILQ-QKYDLPLAPIFFEVDALELQK--RQIPNYIQISKFP 713 (809)
Q Consensus 649 ~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl-~~~~i~~~v~~~El~l~~L~~--~~~~~~~~~skfP 713 (809)
..+..++|++|++..+|..||.+| +||.++ ++|||+.|+++||++|++|.. ......+.+++..
T Consensus 211 ~~s~e~~~~~~~l~~~~~eig~~G-v~p~vl~~~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~~~ 277 (288)
T 3dsq_A 211 TESSVVYGDTVDVMKGDLELASGA-MGPHFLDEKWEIFDPWVGLGFGLERLLMIREGTQHVQSMARSL 277 (288)
T ss_dssp ECCCCSSCCCEEEEETTEEEEEEE-EESCTTTTTTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSSCS
T ss_pred cCCcceEEEEEEEEeCCEEEEEEE-ecHHHHHHhcCCCCCeEEEEECHHHHHHHHcCCchhhcCCCCc
Confidence 234457899999999999999999 999999 999999899999999999974 2334555555433
No 23
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=99.92 E-value=4e-26 Score=209.15 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=89.8
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
+++||+|+++++||+||||++|+||+|++.+||||||+|++ +|+|++|+.+|+ +.+||++||||++|+||+
T Consensus 16 ~lrVG~I~~~e~hp~adkL~~~~Vd~G~~~rqIv~G~~n~~----~~~al~G~~v~~-----~~nlkp~klrGv~S~GMl 86 (111)
T 1pyb_A 16 DLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYY----TPEELVGKKIVI-----VANLKPRKIFGIESQGMI 86 (111)
T ss_dssp CEEEEEEEEEECCSSCSCCEEEEEEETTEEEEEEECCTTTS----CHHHHTTCEEEE-----ETTSCSSCTTSCCBSSEE
T ss_pred CEEEEEEEEEEECCCCCccEEEEEEeCCcEEEEEECCcccc----CccccCCCEEEC-----cEeecceEEccEeeccEE
Confidence 49999999999999999999999999997899999999998 899999999997 789999999999999999
Q ss_pred cCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
||+.| +++.||+++|+++++|+++
T Consensus 87 ~sa~e----~~~~~il~~~~~~~~G~~v 110 (111)
T 1pyb_A 87 LAASD----GENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp CEEEC----SSCEEEEEESSCCCTTEEC
T ss_pred EEecc----CCceEEEECCCCCCCCCCC
Confidence 99998 4578999999999999875
No 24
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.5e-25 Score=205.54 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=87.4
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
+++||+|+++++||+||||++|+||+|++.+||||||+|+ ++|.|++|+.+|+ ..+||++|+||++|+||+
T Consensus 16 ~lrVG~I~~~e~hp~adkL~~~~VD~G~~~rqIV~G~~n~----~~~~~l~G~~v~~-----~~nlkp~klrGv~S~GMl 86 (112)
T 2cwp_A 16 QMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQ----IPPEELEGKKFIF-----VVNLKPKKFSGVESQGML 86 (112)
T ss_dssp CEEEEEEEEEEECTTCSSCEEEEEECSSCEEEEEECCTTT----SCGGGTTTCEEEE-----ECSSCCEEETTEEECSEE
T ss_pred CEEEEEEEEEEECCCCCccEEEEEEeCCeEEEEEECCccc----cChhhcCCCEEEC-----eEEEccceeCCEecccEE
Confidence 4999999999999999999999999998789999999999 5799999999997 789999999999999999
Q ss_pred cCccccCCCCCCC-ceEEcCCCCCCCCch
Q psy9573 124 CSEYDLKINNKNK-YLFELPEDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~-GI~~l~~~~~~G~~~ 151 (809)
||++ +++++ ||+.+|+++++|+++
T Consensus 87 ~sa~----~~~~~~~il~~~~~~~~G~~i 111 (112)
T 2cwp_A 87 ILAE----TEDGKVYLIPVPEEVPVGARV 111 (112)
T ss_dssp CCEE----CTTSCEECCBCCTTSCTTCEE
T ss_pred EEee----cCCCcEEEEECCCCCCCCCCC
Confidence 9997 33455 899999999999875
No 25
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=99.91 E-value=3.9e-25 Score=201.33 Aligned_cols=93 Identities=20% Similarity=0.348 Sum_probs=85.2
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
.++||+|+++++||+||||++|+||+|++.+||||||+| .++|+|++|+.+|+ +.+||++|+||++|+||+
T Consensus 12 dl~VG~I~~~e~hp~adkL~~~~Vd~G~~~rqIv~G~~n----~~~~~al~G~~v~~-----~~nlkp~klrGv~S~GMl 82 (107)
T 1mkh_A 12 DLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKK----YYKPEELLNRYVVV-----VANLEPKKLRGIGSQGML 82 (107)
T ss_dssp CEEEEEEEEEEECTTCSSCEEEEEECSSCEEEEEECCTT----TCCHHHHTTCEEEE-----ETTSCCEEC-CCEECCCB
T ss_pred CEEEEEEEEEEECCCCCccEEEEEEeCCeEEEEEeCCcc----ccChhhcCCCEEEC-----CeeEcceEEcCeeeccEE
Confidence 499999999999999999999999999888999999999 45899999999997 789999999999999999
Q ss_pred cCccccCCCCCCCceEEc--CCCCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFEL--PEDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l--~~~~~~G~~~ 151 (809)
||+. +++||++| |+++++|+++
T Consensus 83 ~s~~------~~~gi~~l~p~~~~~~G~~i 106 (107)
T 1mkh_A 83 LAAD------DGERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp CEEE------CSSCEEECCCSSCCCTTCEE
T ss_pred EEcc------CCCcEEEEeCCCCCCCCCCC
Confidence 9993 46799999 8899999875
No 26
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=99.90 E-value=5.2e-25 Score=201.00 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=86.3
Q ss_pred eEEEEEEEEeeCCCCCce-eEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 45 IIIGKIINIIKHPDIDNF-NICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L-~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
++||+|+++++||+|||| ++|+||+|+ +.+||||||+|+ ++|.|++|+.+|+ ..+||++||||++|+||
T Consensus 12 i~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~----~~~~~l~G~~v~~-----~~nlkp~klrGv~S~GM 82 (109)
T 1gd7_A 12 LRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITEL----YRPEDLVGRLVVC-----AVNLGAKRVAGFLSEVL 82 (109)
T ss_dssp EEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTT----CCHHHHTTCEEEE-----ECSSCCEEETTEEECSE
T ss_pred EEEEEEEEEEECCCCccccEEEEEEcCCCcEEEEEECCccc----cChhhcCCCEEEe-----eEecCceEeccEeecCE
Confidence 899999999999999999 999999997 789999999999 5799999999997 78999999999999999
Q ss_pred ccCccccCCCCCCCceEEc--CCCCCCCCch
Q psy9573 123 LCSEYDLKINNKNKYLFEL--PEDAPIGKNF 151 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI~~l--~~~~~~G~~~ 151 (809)
+||++ ++++||++| |+++++|+++
T Consensus 83 l~sa~-----~~~~~i~~l~~~~~~~~G~~i 108 (109)
T 1gd7_A 83 VLGVP-----DEAGRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp ECEEE-----CTTSCEEEEEESSCCCTTCBC
T ss_pred EEEee-----cCCCcEEEEeCCCCCCCCCCC
Confidence 99997 345689999 8999999876
No 27
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=99.90 E-value=6.3e-25 Score=201.71 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=86.3
Q ss_pred CeEEEEEEEEeeCCCCCce-eEEEEecCC--ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceecc
Q psy9573 44 KIIIGKIINIIKHPDIDNF-NICKVDTYK--NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSY 120 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L-~~~~v~~g~--~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~ 120 (809)
+++||+|+++++||+|||| ++|+||+|+ +.+||||||+|+ ++|.|++|+.+|+ ..+||++||||++|+
T Consensus 14 ~lrVG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~----~~~~~l~G~~v~~-----~~nlkp~kirGv~S~ 84 (113)
T 2nzh_A 14 DIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKR----YKPEGLINKQVIA-----VVNFPPRRIAGFKSE 84 (113)
T ss_dssp CEEEEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEECCTTT----CCHHHHTTCEEEE-----ETTSCCEEETTEEEC
T ss_pred CEEEEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEECCCcc----cCHHHhCCCEEEe-----eEEEcceEECCEEeC
Confidence 3999999999999999999 999999996 589999999999 5799999999997 789999999999999
Q ss_pred CcccCccccCCCCCCCce--EEcCCCCCCCCch
Q psy9573 121 GLLCSEYDLKINNKNKYL--FELPEDAPIGKNF 151 (809)
Q Consensus 121 GMlcs~~eLGl~~~~~GI--~~l~~~~~~G~~~ 151 (809)
||+||++| +++|| +.+|+++++|+++
T Consensus 85 GMl~sa~~-----~~~~i~ll~~~~~~~~G~~i 112 (113)
T 2nzh_A 85 VLVLGGIP-----GQGDVVLLQPDQPVPNGTKI 112 (113)
T ss_dssp SEECEEEE-----ETTEEEEEEESSCCCTTCEE
T ss_pred CEEEEeec-----CCCCEEEEECCCCCCCCCCC
Confidence 99999987 45678 7779999999875
No 28
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.7e-24 Score=199.75 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=86.6
Q ss_pred CeEEEEEEEEeeCCCCCce-eEEEEecCC--ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceecc
Q psy9573 44 KIIIGKIINIIKHPDIDNF-NICKVDTYK--NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSY 120 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L-~~~~v~~g~--~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~ 120 (809)
+++||+|+++++||+|||| ++|+||+|+ +.+||||||+|+ ++|.|++|+.+|+ ..+||++||||++|+
T Consensus 17 ~lrVG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~----~~~~~l~G~~v~~-----~~nlkp~kirGv~S~ 87 (116)
T 2q2i_A 17 DIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVH----YTPESLVGRQVLG-----VVNFPPRQIGPFRSE 87 (116)
T ss_dssp CEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTT----CCHHHHTTCEEEE-----ECCSCCEEETTEEEC
T ss_pred CEEEEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEECCcCc----cChhhcCCCEEEC-----ceEEcceEECCEEeC
Confidence 3899999999999999999 999999996 589999999999 6899999999997 789999999999999
Q ss_pred CcccCccccCCCCCCCceEEc--CCCCCCCCch
Q psy9573 121 GLLCSEYDLKINNKNKYLFEL--PEDAPIGKNF 151 (809)
Q Consensus 121 GMlcs~~eLGl~~~~~GI~~l--~~~~~~G~~~ 151 (809)
||+||++ ++++||++| |+++++|+++
T Consensus 88 GMl~sa~-----~~~~~i~ll~p~~~~~~G~~i 115 (116)
T 2q2i_A 88 VLTLGFA-----DANGDIVLAAVERPVPNGEKM 115 (116)
T ss_dssp CEECEEE-----CTTSCEEEEEESSCCCTTCBC
T ss_pred CEEEEee-----cCCCcEEEEeCCCCCCCCCCC
Confidence 9999997 345689999 8899999876
No 29
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=8.3e-24 Score=198.54 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=86.0
Q ss_pred eEEEEEEEEeeCCCCCce-eEEEEecCC--ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccC
Q psy9573 45 IIIGKIINIIKHPDIDNF-NICKVDTYK--NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYG 121 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L-~~~~v~~g~--~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~G 121 (809)
++||+|+++++||+|||| ++|+||+|+ +.+||||||+|+ ++|.|++|+.+++ .++||++||||++|+|
T Consensus 33 lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~----~~p~al~G~~v~~-----~~nlkp~kirGv~SeG 103 (131)
T 2q2h_A 33 IRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVH----YTPESLVGRQVLG-----VVNFPPRQIGPFRSEV 103 (131)
T ss_dssp EEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTT----CCHHHHTTCEEEE-----ECCSCCEEETTEEECC
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcc----cChhhcCCCEEEC-----ceEEcceEECCEEeCc
Confidence 899999999999999999 999999996 589999999999 5799999999997 7899999999999999
Q ss_pred cccCccccCCCCCCCceEEc--CCCCCCCCch
Q psy9573 122 LLCSEYDLKINNKNKYLFEL--PEDAPIGKNF 151 (809)
Q Consensus 122 Mlcs~~eLGl~~~~~GI~~l--~~~~~~G~~~ 151 (809)
|+||++ ++++||++| |+++++|+++
T Consensus 104 Ml~sa~-----~~~~gi~lL~p~~~~~~G~~i 130 (131)
T 2q2h_A 104 LTLGFA-----DANGDIVLAAVERPVPNGEKM 130 (131)
T ss_dssp EECEEE-----CTTSCEEEEEESSCCCTTCBC
T ss_pred EEEEee-----cCCCcEEEEeCCCCCCCCCCC
Confidence 999997 345689999 8999999876
No 30
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=99.85 E-value=2.6e-22 Score=183.72 Aligned_cols=93 Identities=24% Similarity=0.416 Sum_probs=81.8
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeC-CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCN-IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~g-a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
++||+|+++++||+||||++|+||+|++.+||||| |+|+++| +++|+.++. ..+|+++|+||++|+||+
T Consensus 14 lrVG~I~~~e~hp~adkL~v~~Vd~G~~~~qiv~g~a~~~~~~-----~l~G~~v~~-----~~nikp~klrGv~S~GMl 83 (111)
T 1pxf_A 14 MRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEE-----ELMGKTVVV-----LCNLQKAKMRGETSECML 83 (111)
T ss_dssp EEEEEEEEEECCTTCTTCCEEEEEETTEEEEEECCCCTTSHHH-----HHTTCEEEE-----ETTCSCCCBTTBCCCCCB
T ss_pred EEEEEEEEEEECCCCCeEEEEEEEeCCCceEEEEeccCcccch-----hcCCCEEEE-----EEEEecccCCCEecceEE
Confidence 99999999999999999999999999988999999 8999976 456666665 578999999999999997
Q ss_pred -cCccccCCCCCCCceEEcCC-CCCCCCch
Q psy9573 124 -CSEYDLKINNKNKYLFELPE-DAPIGKNF 151 (809)
Q Consensus 124 -cs~~eLGl~~~~~GI~~l~~-~~~~G~~~ 151 (809)
||..| +++++++.+|+ ++++|+.+
T Consensus 84 L~a~~e----d~~~~~l~~p~~~~~~G~~v 109 (111)
T 1pxf_A 84 LCAETD----DGSESVLLTPERMMPAGVRV 109 (111)
T ss_dssp CEEECT----TSCCEEECCCSSCCCTTCBC
T ss_pred EEeccc----CCCcEEEEcCCCCCCCCCEe
Confidence 99887 44578888886 57899876
No 31
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=99.84 E-value=2.2e-21 Score=190.30 Aligned_cols=90 Identities=24% Similarity=0.379 Sum_probs=82.7
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCccc-----CCCEEEEEecCceecCcccCCceEEeeceecce
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIR-----VGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI 117 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~ 117 (809)
+++||+|+++++||+||||++|+||+|+ +.+||||||+|+. .|++|++. + +|++++|||+
T Consensus 11 ~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl------~--------nlkp~klrGv 76 (172)
T 1ntg_A 11 DIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVL------C--------NLKPQKMRGV 76 (172)
T ss_dssp CEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEE------C--------CBCCEEETTE
T ss_pred CEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEE------E--------eEcceeecce
Confidence 5999999999999999999999999998 6899999999998 99999984 3 5999999999
Q ss_pred eccCc-ccCccccCCCCCCCc--eEEcCCCCCCCCch
Q psy9573 118 KSYGL-LCSEYDLKINNKNKY--LFELPEDAPIGKNF 151 (809)
Q Consensus 118 ~S~GM-lcs~~eLGl~~~~~G--I~~l~~~~~~G~~~ 151 (809)
+|+|| |||..|. +++| |+++|+++++|+++
T Consensus 77 ~S~GMvLcs~~e~----~~~~v~il~~~~~~~~G~~v 109 (172)
T 1ntg_A 77 ESQGMLLCASIEG----INRQVEPLDPPAGSAPGEHV 109 (172)
T ss_dssp EECCEECEEEEES----SSEEEEECBCCBTCCTTCEE
T ss_pred ecCCEEeEecccc----cCCCeEEEECCCCCCCCCEE
Confidence 99999 9999984 3667 99999999999988
No 32
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=99.83 E-value=8.4e-22 Score=192.92 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=85.9
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
.++||+|+++++||+||||++|+||+|+ +.+||||||+|+ +++|.+|+++|.- +.+|++++|||++|+||
T Consensus 7 dirVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~-----v~~a~lggk~v~~----~~nlkp~klrGv~SeGM 77 (171)
T 1fl0_A 7 DLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNH-----VPLEQMQNRMVIL----LCNLKPAKMRGVLSQAM 77 (171)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTT-----SCGGGGTTEEEEE----ECCSCCEESSSCEECCE
T ss_pred eEEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCce-----EcchhcCCEEEcC----ceEEeeEEEccEeccCE
Confidence 4899999999999999999999999998 689999999997 7889999999841 37999999999999999
Q ss_pred -ccCccccCCCCCCCceEEcCCCCCCCCchh
Q psy9573 123 -LCSEYDLKINNKNKYLFELPEDAPIGKNFY 152 (809)
Q Consensus 123 -lcs~~eLGl~~~~~GI~~l~~~~~~G~~~~ 152 (809)
|||+.+ ++.||+++|+++++|+++.
T Consensus 78 vLcs~~~-----~~~~il~~~~~~~~G~~v~ 103 (171)
T 1fl0_A 78 VMCASSP-----EKIEILAPPNGSVPGDRIT 103 (171)
T ss_dssp ECEEEET-----TEEEECBCCTTCCTTCBCC
T ss_pred EEEEecC-----CCEEEEECCCCCCCCCEEE
Confidence 999773 4568999999999999883
No 33
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=99.81 E-value=3.9e-21 Score=175.95 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=75.8
Q ss_pred eEEEEEEEEeeCCCCCc-eeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 45 IIIGKIINIIKHPDIDN-FNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~-L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
++||+|+++++||+||| |++|+||+|+ +.+|||||+.|. +.+-+++|+.++. ..+||++||||++|+||
T Consensus 15 irVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~----~~~~~l~G~~v~~-----~~nlkp~kirGv~S~GM 85 (112)
T 3g48_A 15 LRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKR----YNPEDLIGQQIVA-----VVNFPPKRVAGFKSEVL 85 (112)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTT----CCHHHHTTCEEEE-----ECCSCCEEETTEEECSE
T ss_pred EEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccc----cChhHcCCCEEEE-----EccccceeECCeecCcE
Confidence 99999999999999999 9999999998 789999997554 2233444444443 35799999999999999
Q ss_pred ccCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 123 LCSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
+||+.+ ++.+-.++..+.++++|+.+
T Consensus 86 l~s~~~---~~~~~~ll~p~~~~~~G~~i 111 (112)
T 3g48_A 86 VLGGVP---EAGDVVLLQPNMELPNGTKI 111 (112)
T ss_dssp ECEEEE---ETTEEEECCCSSCCCTTCBC
T ss_pred EeEeec---CCCCEEEEeCCCCCCCCCCc
Confidence 999876 22234567777889999875
No 34
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=99.80 E-value=2.3e-20 Score=172.30 Aligned_cols=93 Identities=19% Similarity=0.281 Sum_probs=74.0
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeC-CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCN-IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~g-a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
++||+|+++++||+||||++|+||+|++.+|+||| |+|+.+ -+++|+.++. ..+||++||||++|+||+
T Consensus 14 irVG~I~~~e~hp~AdKL~~~~VD~G~~~~~iv~g~~~~y~p-----e~LvGk~v~~-----v~Nlkp~kirGv~S~GMl 83 (118)
T 3ers_X 14 MRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSE-----EELMGKTVVV-----LCNLQKAKMRGETSECML 83 (118)
T ss_dssp EEEEEEEEEECCTTCSSCEEEEEECSSSEEEEEECCTTTSCH-----HHHTTCEEEE-----ECCSCCEEETTEEECCEE
T ss_pred EEEEEEEEEEEcCCCCCcEEEEEEcCCcEeeEEEEeehhcCH-----hHhcCCEEEe-----ecccccceECCeeceEEE
Confidence 79999999999999999999999999966777765 677763 3345666665 578999999999999999
Q ss_pred cCccccCCCCCCCceEEc--CCCCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFEL--PEDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l--~~~~~~G~~~ 151 (809)
||+.+ +++.+++.+ ++++++|+.+
T Consensus 84 l~a~~----~d~~~~~ll~p~~~~~~G~rv 109 (118)
T 3ers_X 84 LCAET----DDGSESVLLTPERMMPAGVRV 109 (118)
T ss_dssp CEEEC----TTSSCEEECCCSSCCCTTCBC
T ss_pred EEEEc----CCCCcEEEEcCCCCCCCCCEE
Confidence 99764 444444444 3578999876
No 35
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.67 E-value=4.5e-18 Score=203.75 Aligned_cols=93 Identities=20% Similarity=0.334 Sum_probs=0.0
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
+++||+|++|++||+||||.+|+||+|++.+|||||++|+ ++|++++|+.+++ +.+||++||||++|+|||
T Consensus 627 ~~~vg~i~~~~~~p~adkl~~~~vd~G~~~~~iv~g~~~~----~~~~~l~G~~v~~-----~~nl~~~k~~g~~S~gM~ 697 (722)
T 1rqg_A 627 DLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKY----YKPEELLNRYVVV-----VANLEPKKLRGIGSQGML 697 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEEEEeCCCCCcceEEEEEcCCceEEEEECCccc----CCHHHcCCCEEeC-----eeEEcceeeCCcccCeEE
Confidence 4899999999999999999999999998789999999999 6899999999998 799999999999999999
Q ss_pred cCccccCCCCCCCceEEcCC--CCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFELPE--DAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l~~--~~~~G~~~ 151 (809)
||+. ++ +||++|+. ++++|+++
T Consensus 698 ~~~~-----~~-~~i~~l~~~~~~~~G~~~ 721 (722)
T 1rqg_A 698 LAAD-----DG-ERVALLMPDKEVKLGAKV 721 (722)
T ss_dssp ------------------------------
T ss_pred EEee-----CC-CcEEEeCCCCCCCCCCCC
Confidence 9993 23 68999986 78899876
No 36
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=97.32 E-value=0.00029 Score=66.97 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=58.4
Q ss_pred Ccc-cccccCCCEEEEEcCCCCeEEecCCe-eeee-------------cCCcEEEEe-CCceeEecccccCccceeecCC
Q psy9573 269 NIF-DLSKISGELNIRWGNIGETIKISNDL-IIKI-------------DKNIGIISD-NFKIISLSGIINGFDASVTLNT 332 (809)
Q Consensus 269 h~f-D~dki~~~i~vr~a~~~e~~~~L~~~-~~~l-------------~~~~lvi~D-~~~~lslagi~g~~~s~v~~~T 332 (809)
-.| |+|++..+++||...+|++|.+++.. ..+| .+..++++| ++++++++|+..++..+++++|
T Consensus 42 ~~~~D~dki~~pL~vR~r~~GDr~~p~g~~g~KkLKklf~d~kIP~~~R~~~Pll~~~~~~IiwV~G~~~s~~~kv~~~T 121 (142)
T 3hj7_A 42 WFVVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIPRMERDRWPIVEDADGRILWVPGLKKSAFEAQNRGQ 121 (142)
T ss_dssp EEEECGGGSCSSEEEECCCTTCEEEBSTTCCEEEHHHHHHHTTCCHHHHTTCCEEECTTCCEEEETTTEEBTTSCCCSCC
T ss_pred EEEECHHHCCCCEEEEecCCCCEEEECCCCCCccHHHHHHHcCCCHHHhCCceEEEECCCeEEEEeCeeeccceeeCCCC
Confidence 368 99999999999999999999998632 3444 257799998 6899999999999999999999
Q ss_pred ceEE
Q psy9573 333 KDIY 336 (809)
Q Consensus 333 ~~il 336 (809)
+++|
T Consensus 122 ~~vl 125 (142)
T 3hj7_A 122 ARYI 125 (142)
T ss_dssp SCEE
T ss_pred CEEE
Confidence 9985
No 37
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=97.27 E-value=0.0086 Score=63.85 Aligned_cols=191 Identities=9% Similarity=-0.013 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cC-C-CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQ-N-INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLER 573 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~-~-~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~ 573 (809)
.++.+.+|++|...||.|+-|-.+.+..+ .+ .+ . ...+...+. -......||+|- .+. ++.-...+ .
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~--~~~~~~~L~~Sp--e~~--~~~l~~~g--~ 88 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVE--IYGVKMRLTHSM--ILH--KQLAIAMG--L 88 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEE--ETTEEEEECSCS--HHH--HHHHHHTT--C
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEE--cCCCCEEeccCh--HHH--HHHHhhcC--c
Confidence 45688899999999999999999887711 11 11 0 001122221 112234677554 332 12222222 4
Q ss_pred eeEEEEeeEEecCC--CCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcC--C------
Q psy9573 574 IRLFEIANVYLHDK--FIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK--L------ 643 (809)
Q Consensus 574 i~lFEiG~Vf~~~~--~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lg--i------ 643 (809)
.|+|++|+||+.++ .+ +..+..|.+++.+-++| .|+.|+.+.++.+++.+. +
T Consensus 89 ~rvf~ig~~FR~E~pq~~-----~~RH~~EFtqle~e~~~-------------~~~~~l~~~~e~l~~~l~~~~~~~~~~ 150 (294)
T 1nnh_A 89 KKIFVLSPNIRLESRQKD-----DGRHAYEFTQLDFEVER-------------AKMEDIMRLIERLVYGLFRKAEEWTGR 150 (294)
T ss_dssp CEEEEEEEEECCCCGGGC-----SSSCCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cceEEEEccEeCCCCCCC-----CCccccceeEEEEEecC-------------CCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 79999999998765 21 11355699999999988 368999999999987764 1
Q ss_pred --e-e--------------------------eecc-----CCCCcCc-----cEEEEEEC-CE-EEEEEEe--ecHHHH-
Q psy9573 644 --N-F--------------------------LKIN-----NSILHPN-----RSALIFKK-TK-NIGFIGE--IHPILQ- 679 (809)
Q Consensus 644 --~-~--------------------------~~~~-----~~~~hPg-----rsA~I~~~-g~-~iG~iGe--lhP~vl- 679 (809)
. + .+.- .|++.|. ++.+++++ |. +|+--|. .||+++
T Consensus 151 ~i~~~~~~~r~~y~ea~~~~g~~~er~~~~~~P~~v~~~P~pf~~~~d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~ 230 (294)
T 1nnh_A 151 EFPKTKRFEVFEYSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIV 230 (294)
T ss_dssp CCCCCSSCEEEEHHHHHHHTSSHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEETTTTEEEEEEEEBCCCHHHHH
T ss_pred ccccCCCceEeEHHHHHHHhCChHhhhhhcCCCEEEEcCChHHhCCCCCCeEEEEEEEECCCcEEEecCeeecCCHHHHH
Confidence 1 0 0110 4566664 78899999 86 6655554 788875
Q ss_pred ---Hh----------------CCCCCceEEEEeehHHHhc--ccCCccccCCCCCCc
Q psy9573 680 ---QK----------------YDLPLAPIFFEVDALELQK--RQIPNYIQISKFPNV 715 (809)
Q Consensus 680 ---~~----------------~~i~~~v~~~El~l~~L~~--~~~~~~~~~skfP~~ 715 (809)
+. ||.+.|...|-+.+|+|.. .....-+.+.-||..
T Consensus 231 ~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~ 287 (294)
T 1nnh_A 231 AKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRI 287 (294)
T ss_dssp HHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCC
T ss_pred HHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCC
Confidence 22 3666689999999999974 233344555555543
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=96.78 E-value=0.006 Score=67.26 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=94.0
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCC-CCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNIN-NYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~-~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+.+.+.+|+.+...||+|+.|-.|...+....-..... ++.+++..+ +.+.-+||+-+.|++...++.|.+....++
T Consensus 40 ~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~ 118 (373)
T 3rac_A 40 RRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGRTPI 118 (373)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCCCCe
Confidence 456788899999999999999999988776544321111 345566555 455668999999999999999876555679
Q ss_pred eEEEEeeEEecCCCCCCCC-CccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 575 RLFEIANVYLHDKFIKDSP-FTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~-~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|+|++|.||+.+... ... .+....+|..+.++=+.|... ....| .++-.++..+++.+|+
T Consensus 119 r~~y~g~vfR~e~~g-~~~~~~~gR~ReF~Q~g~ei~g~~d-------~~~aD-aEvi~l~~~~l~~lgl 179 (373)
T 3rac_A 119 RWCYCERVYRRTDDP-ASLSWASGKAAESTQVGIERIGEEA-------SVDVD-MDVLRLLHEASAAAGV 179 (373)
T ss_dssp EEEEEEEEEECC-------------CEEEEEEEEEECSSCC-------CHHHH-HHHHHHHHHHHHHHTC
T ss_pred EEEEEcceEccCCCc-ccccccCCccceeEEeeeEEECCCC-------CHHHH-HHHHHHHHHHHHHcCC
Confidence 999999999864320 000 012246788899888887320 11233 3677777778888876
No 39
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=96.71 E-value=0.0046 Score=70.27 Aligned_cols=154 Identities=10% Similarity=0.104 Sum_probs=99.0
Q ss_pred hccCCCCCCCCCccccCCC--CCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCC-cEEeeCCC------
Q psy9573 474 YGFENIPISLPITVSKISP--IKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNY-PIELLNPI------ 544 (809)
Q Consensus 474 yGydnip~~~p~~~~~~~~--~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~-~i~L~NPi------ 544 (809)
....+|..++|.......+ ....+.+.+.+++.+...||+|+.|-.|-..+.+..-+ ...++ .+++.+..
T Consensus 5 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G-~~~ke~m~~~~d~~~~g~~~ 83 (465)
T 3net_A 5 AKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG-NQGDNIIYGLEPILPPNRQA 83 (465)
T ss_dssp ----CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG-CC--CBEEEEEEEC------
T ss_pred cCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC-CCCccceEEEeccccccccc
Confidence 4556777666654321111 11234567888999999999999999998877654323 21234 67777663
Q ss_pred --------CccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCC
Q psy9573 545 --------SKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEP 616 (809)
Q Consensus 545 --------s~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~ 616 (809)
+...-+||+-+.|++.+.++.|.+....++|+|.+|.||+.+... ....+|..++++=+.|...
T Consensus 84 ~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~------~gr~Ref~Q~g~ei~G~~~-- 155 (465)
T 3net_A 84 EKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAK------DGRFRQFRQCDIDVVGREK-- 155 (465)
T ss_dssp ----------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------------CCEEEEEEEEEECSSC--
T ss_pred ccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCC------CCCcceeEEeeEEEECCCC--
Confidence 345678999999999999999876544579999999999865321 2356899999998888421
Q ss_pred CCCCCCCcC--CHHHHHHHHHHHHHhcCC
Q psy9573 617 QWGEENRNI--DYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 617 ~w~~~~~~~--df~dlKg~le~ll~~lgi 643 (809)
... |. ++-.++..+++.+|+
T Consensus 156 ------~~a~~Da-Evi~l~~~~l~~lgl 177 (465)
T 3net_A 156 ------LSLLYDA-QMPAIITEIFEAVNI 177 (465)
T ss_dssp ------CCHHHHH-HHHHHHHHHHHHHTC
T ss_pred ------ccchhhH-HHHHHHHHHHHHcCC
Confidence 122 33 466666667777764
No 40
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=96.65 E-value=0.01 Score=66.10 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
.+.+.+.+|+.+...||+|+.|-.|...+.+..-.....++.+++..+ +.+.=+||+-+.|++.+.++.|.+....++|
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r 105 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYPLR 105 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSCEE
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCCeE
Confidence 445778889999999999999999977665443221111345677666 4455689999999999999988765555799
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
+|++|.||+.+... ....+|..++++=+.|... ...| .++-.++..+++.+|+
T Consensus 106 ~~y~g~vfR~e~~~------~gR~Ref~Q~g~ei~G~~~--------~~aD-aEvi~l~~~~l~~lgl 158 (400)
T 3od1_A 106 LAYQSNVYRAQQNE------GGKPAEFEQLGVELIGDGT--------ASAD-GEVIALMIAALKRAGL 158 (400)
T ss_dssp EEEEEEEECCCC---------CCCSEEEEEEEEEESCCS--------HHHH-HHHHHHHHHHHHHTTC
T ss_pred EEEEcCEEeCCCCC------CCCCCccEEeEEEEECCCC--------hHhH-HHHHHHHHHHHHHCCC
Confidence 99999999864321 2356899999998888421 1223 3566666667777764
No 41
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=96.30 E-value=0.012 Score=64.21 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-h-c--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-F-S--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~-~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+++.+.+|+.+...||+|+.|-.|...+.... + . ....++.+++..+ +.+.-+||+-+.|++.+.++.| .+.
T Consensus 39 ~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~-~~~- 115 (344)
T 1z7m_A 39 LRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI-KDS- 115 (344)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC-CSC-
T ss_pred HHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc-CCC-
Confidence 456788899999999999999999988876644 1 1 1112456777776 5566799999999999999988 333
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.++|+|++|.||+.+... ....+|..++++=+.|... ...| .++-.++..+++.+|+
T Consensus 116 ~P~rl~y~g~vfR~e~p~------~gR~REF~Q~g~ei~g~~~--------~~aD-aEvi~l~~~~l~~lgl 172 (344)
T 1z7m_A 116 TSARYSYFGKIFRKEKRH------KGRSTENYQIGIELFGESA--------DKSE-LEILSLALQVIEQLGL 172 (344)
T ss_dssp CCEEEEEEEECCCCCC-------------CCEEEEEEEESSCH--------HHHH-HHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECcEEccCCCC------CCCcceeEEEEEEEEcCCC--------cHHH-HHHHHHHHHHHHHCCC
Confidence 459999999999865321 2246889999998888421 1223 4677777888888886
No 42
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=96.23 E-value=0.036 Score=61.82 Aligned_cols=132 Identities=12% Similarity=0.040 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCC-C--CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQN-I--NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~-~--~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+++.+.+|+.+...||+|+.|-.|...+....- +.. + .++..++... +.+.=+||+-+.|++......|.....
T Consensus 21 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~~ 99 (423)
T 1htt_A 21 WQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLYN 99 (423)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhcccccC
Confidence 4567888999999999999999999888765432 220 0 0246777776 556679999999999999987754333
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.++|+|.+|.||+.+... ....+|..+.++=+.|... ... -.++..++..+++.+|+
T Consensus 100 ~P~rl~~~g~vfR~e~p~------~gR~Ref~Q~d~e~~g~~~--------~~a-d~e~i~~~~~~l~~lgl 156 (423)
T 1htt_A 100 QEQRLWYIGPMFRHERPQ------KGRYRQFHQLGCEVFGLQG--------PDI-DAELIMLTARWWRALGI 156 (423)
T ss_dssp CCEEEEEEEEEECCCCCC------SSCCSEEEEEEEEEESCCS--------HHH-HHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEcCEecCCCCC------CCccceeEEeeEEEECCCC--------chh-hHHHHHHHHHHHHHCCC
Confidence 469999999999855221 2245788888887776321 122 23566777788888887
No 43
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=95.97 E-value=0.034 Score=63.09 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cC-CC--CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQ-NI--NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~-~~--~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+.+.+.+++.+...||+|+.|-.|...+....- +. .+ .++.+++...-+.+.-+||+.+.|++...++.|.....
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~ 128 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYD 128 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccC
Confidence 3456788888899999999999999888765432 22 00 12456666543255668999999999999988754323
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.++|+|++|.||+.+... ....+|..+.++=+.|... ...| .++-.++..+++.+|+
T Consensus 129 lP~r~~~~g~vfR~E~~~------~gR~ReF~Q~d~ei~g~~~--------~~ad-aEvi~l~~~~l~~lGl 185 (467)
T 4e51_A 129 GPKRLWYIGPMFRHERPQ------RGRYRQFHQVGVEALGFAG--------PDAD-AEIVMMCQRLWEDLGL 185 (467)
T ss_dssp SCEEEEEEEEEECCCCC---------CCSEEEEEEEEEETCCC--------SHHH-HHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEccEEccCCCC------CCCcCceEEEEEEEEeCCC--------hHHH-HHHHHHHHHHHHHcCC
Confidence 479999999999854321 2246788888887777421 1223 5778888888888886
No 44
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=95.93 E-value=0.056 Score=60.27 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cC-C--CCCCcEEeeCCCCccccccchhhHHHHHHHHHHH-hcCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQ-N--INNYPIELLNPISKKFNTMRSTLIGSLVNNICYN-LKRK 570 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~-~--~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N-~~~~ 570 (809)
.+++.+.+|+.+...||+|+.|-.|...+....- +. . ..++..++... +.+.=+||+-+.|++......| ....
T Consensus 20 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~~~ 98 (421)
T 1h4v_B 20 HQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVW 98 (421)
T ss_pred HHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhcccccc
Confidence 5567888999999999999999999887765432 21 0 01345677665 5566799999999999999876 3333
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
..++|+|++|.||+.+... ....+|..+.++=+.|... ...| .++..++..+++.+|+
T Consensus 99 ~lP~rl~~~g~vfR~e~p~------~gR~REf~Q~g~e~~g~~~--------~~ad-~e~i~~~~~~l~~lgl 156 (421)
T 1h4v_B 99 PQPVRLWMAGPMFRAERPQ------KGRYRQFHQVNYEALGSEN--------PILD-AEAVVLLYECLKELGL 156 (421)
T ss_pred CCCeEEEEecCeecCCCCC------CCCcccEEEccEEEECCCC--------hhhh-HHHHHHHHHHHHHcCC
Confidence 3469999999999854221 1245788888876666321 1223 3566677777888875
No 45
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=95.89 E-value=0.031 Score=62.67 Aligned_cols=132 Identities=10% Similarity=0.048 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+++.+.+|+.+...||+|+.|-.|...+....- +....++.+++... +.+.=+||+.+.|++....+.| +....++
T Consensus 23 ~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~-~~~~lP~ 100 (434)
T 1wu7_A 23 EKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSR-KDLQRPL 100 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTC-TTCCSSE
T ss_pred HHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECC-CCCEEEeCCCChHHHHHHHHhc-CCCCCCe
Confidence 4567888999999999999999999887765542 21101345677765 5566799999999999999887 3222469
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~ 644 (809)
|+|.+|.||+.+... ....+|..+.++=+.|... ...| .++-.++..+++.+|+.
T Consensus 101 rl~~~g~vfR~erp~------~gR~REF~Q~d~ei~g~~~--------~~ad-~E~i~~~~~~l~~lgl~ 155 (434)
T 1wu7_A 101 RWYSFPKVWRYEEPQ------AGRYREHYQFNADIFGSDS--------PEAD-AEVIALASSILDRLGLQ 155 (434)
T ss_dssp EEEECCEEECCCCSC------SSCCSEEEEEEEEEESCCS--------HHHH-HHHHHHHHHHHHHTTTT
T ss_pred EEEEEcCeecCCCCC------CCCccceEEeeEEEEcCCC--------hHhh-HHHHHHHHHHHHHcCCC
Confidence 999999999854221 2246788888887777421 1122 35566777788888864
No 46
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=95.75 E-value=0.032 Score=63.09 Aligned_cols=132 Identities=9% Similarity=0.018 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+.+.+.+|+.+...||+|+.|-.|...+.+..- +....++.+++..+ +.+.-+||+-+.|++...+..|.+....++
T Consensus 46 ~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~ 124 (456)
T 3lc0_A 46 RRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLLPA 124 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCCSSE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccCCCE
Confidence 3456788888999999999999988876653321 11001245677665 555678999999999999999865444479
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|+|++|.||+.+... ....+|..++++=+.|... ...| .++-.++..+++.+|+
T Consensus 125 r~~y~g~vfR~e~~~------~gR~ReF~Q~g~ei~G~~~--------~~~D-aEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 125 KWYSIPQCWRYEAIT------RGRRREHYQWNMDIVGVKS--------VSAE-VELVCAACWAMRSLGL 178 (456)
T ss_dssp EEEECCEEECCCC-----------CCEEEEEEEEEESCCS--------THHH-HHHHHHHHHHHHHTTC
T ss_pred EEEEeccEEecCCCC------CCCccceEEEEEEEEcCCC--------hHhh-HHHHHHHHHHHHHcCC
Confidence 999999999865321 2246899999998888521 1223 2556666666676665
No 47
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=95.44 E-value=0.029 Score=62.54 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCC---CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC--
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQN---INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-- 569 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~---~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-- 569 (809)
.+.+.+.+++.+...||+|+.|-.|...+....- +.. ..++..++... +.+.-+||+.+.|++....+.+...
T Consensus 19 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~~~ 97 (420)
T 1qe0_A 19 WRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQGN 97 (420)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhcccccc
Confidence 4567888899999999999999999987754322 010 01234555432 3345689999999999998866542
Q ss_pred CCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe
Q psy9573 570 KLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 570 ~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~ 644 (809)
...++|+|.+|.||+.+... ....+|..+.++=+.|... ...| +++-..+..+++.+|+.
T Consensus 98 ~~lP~r~~~~g~vfR~E~~~------~gR~reF~q~~~e~~~~~~--------~~~d-~e~i~~~~~~l~~lgl~ 157 (420)
T 1qe0_A 98 PNQPIKLYYNGPMFRYERKQ------KGRYRQFNQFGVEAIGAEN--------PSVD-AEVLAMVMHIYQSFGLK 157 (420)
T ss_dssp SSCSEEEEEEEEEECC-------------CCEEEEEEEEEESCCC--------HHHH-HHHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEecCEeecCCCc------CCCcccEEEeeEEEECCCC--------chhH-HHHHHHHHHHHHHcCCC
Confidence 23469999999999865221 1245788888887777421 1234 67778888899999863
No 48
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=94.36 E-value=0.23 Score=55.91 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
.+++.+.+|+.+...||+|+.|-.|...+.+..-.....+...++..+ +.+.=+||+-+.+++.+.++.|. ..++|
T Consensus 31 ~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~---~~p~k 106 (464)
T 4g84_A 31 REKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK---LTNIK 106 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTT---CSCEE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcC---CCCce
Confidence 456788899999999999999999987765432111111234556665 56666899999999999888763 34699
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
+|.+|.||+.+... .....++|..++++=+.|.
T Consensus 107 ~~y~g~vfR~erp~----~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 107 RYHIAKVYRRDNPA----MTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp EEEEEEEECCCC----------CCSEEEEEEEEEESC
T ss_pred eEEEecceeccCCc----cccCccceeeecceeccCC
Confidence 99999999854210 0012357888888877773
No 49
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=94.03 E-value=0.22 Score=57.13 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=73.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-hcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCe
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-FSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERI 574 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i 574 (809)
.+.+.+.+|+.+...||+|+.|-.|...+.+.. .+.. .+...++... +.+.=+||+-+.+++.+.++.|. ..++
T Consensus 84 ~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~-~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~---~~p~ 158 (517)
T 4g85_A 84 REKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK---LTNI 158 (517)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC-------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTT---CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC-cceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCC---CCCc
Confidence 446788899999999999999998877665432 1211 1223455554 55666899999999999988763 3469
Q ss_pred eEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 575 RLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 575 ~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
|+|++|.||+.+... .+...++|..++++=+.|.
T Consensus 159 k~yyig~vfR~Erp~----~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 159 KRYHIAKVYRRDNPA----MTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp EEEEEEEEECCCC-----------CCEEEEEEEEEESC
T ss_pred eeEEEeceEeccCcc----cccCccceeeeeceeccCC
Confidence 999999999854210 0012367888988877774
No 50
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=93.35 E-value=0.17 Score=57.14 Aligned_cols=136 Identities=10% Similarity=0.025 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccch---hhHHHHHHHHHHHhcCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRS---TLIGSLVNNICYNLKRK 570 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~---SLlpgLL~~l~~N~~~~ 570 (809)
.+++.+.+|+.+...||+|+.|-.|...+....-+. ...++.+++... ..+.-+||+ -+.+++.+....+.+ +
T Consensus 70 ~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~-~~~~~~LrPt~ee~t~~i~r~~~~s~~-~ 147 (458)
T 2i4l_A 70 LKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADR-HKRELLYGPTNEEMITEIFRAYIKSYK-S 147 (458)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGG-G
T ss_pred HHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeC-CCCeEEECCCChHHHHHHHHHHHhhcc-c
Confidence 456788899999999999999999999876533211 001345677654 334458999 477777776655443 3
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
-++++|++|++|+.+... +.. ..+|..+..+-+.|.... .....+-.+......+++.+|+.|
T Consensus 148 -lP~rl~~ig~~fR~E~~p-----~~Gl~R~REF~q~d~~~f~~~~~------~ad~e~~~~~~~~~~i~~~lGl~~ 212 (458)
T 2i4l_A 148 -LPLNLYHIQWKFRDEQRP-----RFGVMRGREFLMKDAYSFDVDEA------GARKSYNKMFVAYLRTFARMGLKA 212 (458)
T ss_dssp -CSEEEEEEEEEECCCSSC-----BTGGGBCSEEEEEEEEEEESSHH------HHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred -cCeeeEEecCEeeCCCCC-----CCCcccccceEEeEEEEEECCHH------HHHHHHHHHHHHHHHHHHHcCCce
Confidence 359999999999865221 111 247888888776662110 011234456677888999999754
No 51
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=92.60 E-value=0.12 Score=58.54 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=56.2
Q ss_pred cccccccCCCEEEEEcCCCCeEEecCC-eeeeec-------------CCcEEEEeC-CceeEecccccCccceeecCCce
Q psy9573 270 IFDLSKISGELNIRWGNIGETIKISND-LIIKID-------------KNIGIISDN-FKIISLSGIINGFDASVTLNTKD 334 (809)
Q Consensus 270 ~fD~dki~~~i~vr~a~~~e~~~~L~~-~~~~l~-------------~~~lvi~D~-~~~lslagi~g~~~s~v~~~T~~ 334 (809)
.+|.+++..+++||.-++|+.|.+.+. ...+|. +..++++++ +++++++|+.-++..+++++|++
T Consensus 374 ~~~~~~~~~~l~vR~r~~GD~~~~~g~~g~kklk~~f~d~kIP~~~R~~~pll~~~~~~ii~v~g~~~~~~~~~~~~t~~ 453 (464)
T 3a2k_A 374 VVDPASVSLPLRVRTRRRGDRMVLKGTGGTKKLKEIFIEAKIPRMERDRWPIVEDADGRILWVPGLKKSAFEAQNRGQAR 453 (464)
T ss_dssp EECSTTSCSCEEEEECCTTCEEECSSSSCEEEHHHHHHHTTCCHHHHHHCEEEEETTCCEEEETTTEECSCSCCSSCSSC
T ss_pred EecHHHcCCCEEEeCCCCCCEEEECCCCCCcCHHHHHHhcCCCHHHHCCeeEEEECCCcEEEEeccccccccccCCCCce
Confidence 368999988999999999999998874 233332 467899988 89999999999999999999999
Q ss_pred EE
Q psy9573 335 IY 336 (809)
Q Consensus 335 il 336 (809)
++
T Consensus 454 ~l 455 (464)
T 3a2k_A 454 YI 455 (464)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 52
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=92.48 E-value=0.16 Score=53.31 Aligned_cols=114 Identities=4% Similarity=-0.079 Sum_probs=77.5
Q ss_pred HHHHHH--HHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC-CCee
Q psy9573 499 SLFSIR--HQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL-ERIR 575 (809)
Q Consensus 499 ~~~~lr--~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~-~~i~ 575 (809)
+++.+| +.+...||+|+.|-.|-..+.... + ++..+ +.+.=.||+-+.|++. +.+.+... .++|
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-------d--~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~~p~R 72 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-------N--FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPDSQIK 72 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-------S--CEEET-TSCEEEECCCHHHHHH---HHHTTCTTCCCEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-------c--ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCCCceE
Confidence 445555 889999999999888776543211 1 22222 4556689999999999 44554433 4699
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
+|++|.||+.+... . +|..+.++=+.|... ...| -++-.++..+++.+|+
T Consensus 73 ~~y~g~vfR~e~~~--------~-Ref~Q~g~ei~g~~~--------~~~D-aEvi~l~~~~l~~lgl 122 (275)
T 1usy_A 73 VWYADFVYRYSGSD--------L-VAEYQLGLEKVPRNS--------LDDS-LEVLEIIVESASEFFE 122 (275)
T ss_dssp EECCEEEEEEETTE--------E-EEEEEEEEEEESCCS--------HHHH-HHHHHHHHHHHHHHCC
T ss_pred EEEeceEEecCCCC--------C-CeeeEeCEEEecCCC--------chhH-HHHHHHHHHHHHHcCC
Confidence 99999999865432 2 788888888887421 1223 5666677778888886
No 53
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=92.30 E-value=0.37 Score=55.93 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=91.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+++.+.+|+.+...||+|+.|-.|...+....-+. ...++..++..- ..+.-+||+..-|++....+.+.+ .+.-
T Consensus 50 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~l 128 (572)
T 2j3l_A 50 LEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDR-NDRDYILGPTHEETFTELIRDEINSYKRL 128 (572)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECT-TCCEEEECSCCHHHHHHHHHHHCCBGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecC-CCCeEEEccccHHHHHHHHHhhccChhhc
Confidence 456788889999999999999999999886532210 001344555432 345568999999999998888754 2233
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
++|+|++|.+|+.+... +.. -.+|..+..+-+.|...+. ....+-.+......+++.||+.|.
T Consensus 129 P~r~~~~g~~fR~E~~~-----~~Gl~R~ReF~q~d~~~f~~~~~~------~~~e~~~~~~~~~~~~~~lgl~~~ 193 (572)
T 2j3l_A 129 PLNLYQIQTKYRDEKRS-----RSGLLRGREFIMKDGYSFHADEAS------LDQSYRDYEKAYSRIFERCGLEFR 193 (572)
T ss_dssp CEEEEEEEEEECCCSSC-----CTGGGSCSEEEEEEEEEEESSHHH------HHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CHhhheecCeeccCcCc-----ccCccccceeEEeeeEEEcCCHHH------HHHHHHHHHHHHHHHHHHcCCcEE
Confidence 59999999999854321 011 2477788777666631000 011244466788889999998653
No 54
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=91.35 E-value=0.92 Score=50.69 Aligned_cols=112 Identities=17% Similarity=0.102 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
.+..+.+|++|...||.|+-|-.+++... .+. .+...+. -....-.||+|---- ++.+... ..|+
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~----e~~--~~~f~~~--~~~~~~~L~~Spql~-~~~~~~g------~~rv 202 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASAT----EGG--AQLFPVI--YFGKEAFLAQSPQLY-KELMAGV------VERV 202 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCS----STT--CCCCEEE--ETTEEEEECSCCHHH-HHHHHHH------HSEE
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCC----CCC--ceeEEEe--cCCceEEecCCcHHH-HHHHHhC------cCce
Confidence 35678899999999999999999986521 111 1222331 112234677543322 2333322 2699
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|++|+||+.++.+ +..+..|.+++-+-+++ .|+.|+...+|.++..+
T Consensus 203 f~ig~~FR~E~~~-----~~RH~pEFtqle~e~~~-------------~~~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 203 FEVAPAWRAEESD-----TPFHLAEFISMDVEMAF-------------ADYNDVMQLLEKILHNI 249 (429)
T ss_dssp EEEEEEECCCCCC-----SSSCCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEcccccccCCc-----cccccceeeEeeeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876532 12355699999998887 36889998888877654
No 55
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=91.34 E-value=0.84 Score=51.60 Aligned_cols=134 Identities=13% Similarity=0.016 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC-C-CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CC--
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN-I-NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RK-- 570 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~-~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~-- 570 (809)
.+.+.+.+++.+...||+|+.|-.|...+....-... . .++..++ -...+.-+||+..-|++....+.+.+ .+
T Consensus 52 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~ 129 (471)
T 3a32_A 52 RYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKHRSK 129 (471)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhcccc
Confidence 4567888899999999999999999998876543211 0 1344555 22345668999999999999988843 21
Q ss_pred -CCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCC-HHHHHHHHHHHHHh-cCC
Q psy9573 571 -LERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNID-YFDLKNDLENLFFP-IKL 643 (809)
Q Consensus 571 -~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~d-f~dlKg~le~ll~~-lgi 643 (809)
.-++++|.+|.||+.+... .... ..+|..+.++=+.|... ...+ |.++..+...++.. ||+
T Consensus 130 ~~lP~rl~~~g~vfR~E~~~----~~~Gl~R~REF~Q~~~e~f~~~~--------~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 130 LPLPFKVFEFGRVHRYEPSG----SIYGLLRVRGFTQDDAHIIVPGG--------RVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp SCSSEEEEEEEEEECCCCGG----GCBTTTBCSEEEEEEEEEEEEGG--------GHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccCCeEEeeccceeccCCCc----ccccceeEEEEEECCeEEEcChH--------HHHHHHHHHHHHHHHHHHHhhCC
Confidence 3359999999999854321 0011 25677777766655210 1122 46788888899999 998
No 56
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=91.16 E-value=0.97 Score=50.60 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
.+..+.+|++|...||.|+-|-.+.+... .+. .+...+. -....-.||+|---- ++.+. .+ ..|+
T Consensus 139 s~i~~~ir~~f~~~gF~eVeTP~l~~~~~----e~~--~~~f~~~--~~~~~~~Lr~Spel~-~~~~~----~g--~~rv 203 (434)
T 1x54_A 139 ETLIMAAREWLLKDGWHEVFPPILVTGAV----EGG--ATLFKLK--YFDKYAYLSQSAQLY-LEAAI----FG--LEKV 203 (434)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCS----SCG--GGCCEEE--ETTEEEEECSCSHHH-HHHHH----HH--HSEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEeecC----CCC--ceeEEEe--ecCCcEEeccChHHH-HHHHh----cC--ccce
Confidence 35678899999999999999998886521 010 1222221 112334777442221 12122 12 3699
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|++|+||+.++.+ +..+..|.+++.+-+++ .|+.|+...++.++..+
T Consensus 204 f~ig~~FR~E~~~-----~~RH~pEFtqle~e~~~-------------~~~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 204 WSLTPSFRAEKSR-----TRRHLTEFWHLELEAAW-------------MDLWDIMKVEEELVSYM 250 (434)
T ss_dssp EEEEEEECCCCCC-----CSSCCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEecceecCCCC-----CcccccEEEEeeEEEcC-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876532 12355699999998887 36899999999887665
No 57
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=90.79 E-value=0.4 Score=56.54 Aligned_cols=135 Identities=8% Similarity=-0.019 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc----CCCCCCcEEeeCCCCc-cccccchhhHHHHHHHHHHHhcC-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS----QNINNYPIELLNPISK-KFNTMRSTLIGSLVNNICYNLKR- 569 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~----~~~~~~~i~L~NPis~-e~s~lR~SLlpgLL~~l~~N~~~- 569 (809)
.+.+.+.+|+.+...||+|+.|-.|.+.+....-+ .. ++.+++.. ... +.-+||+..-|++....+.+.+.
T Consensus 274 ~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~--~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~~~~sy 350 (645)
T 1nyr_A 274 RREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQ--EDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKPHSY 350 (645)
T ss_dssp HHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCT--TSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccc--cCcceeEe-cCCCeEEEeCCCCCHHHHHHHHhhhhhc
Confidence 45678889999999999999999999987654321 11 22233211 122 34579999999999998877541
Q ss_pred CCCCeeEEEEeeEEecCCCCCCCCCcc-CCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 570 KLERIRLFEIANVYLHDKFIKDSPFTV-SGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 570 ~~~~i~lFEiG~Vf~~~~~~~~~~~~~-~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
..-++|+|++|.||+.+... +..- .-.+|..+..+-+.|.. ++ ..-.|.++...+..+++.+|+
T Consensus 351 r~LPlrl~~~g~~fR~E~~~---~~~GL~R~ReF~Q~d~~~f~~~--~~-----~~d~~~e~i~~~~~~l~~lGl 415 (645)
T 1nyr_A 351 RELPIRIAELGTMHRYEASG---AVSGLQRVRGMTLNDSHIFVRP--DQ-----IKEEFKRVVNMIIDVYKDFGF 415 (645)
T ss_dssp GGCCEEEEEEEEEECCCCTT---TCBTTTBCSEEEEEEEEEEECG--GG-----HHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEeccEEecCCCc---cccCcceeeeEEEccEEEEcCH--HH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 22359999999999864321 0000 12478888777666631 11 111367788889999999998
No 58
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=90.36 E-value=0.76 Score=51.30 Aligned_cols=139 Identities=9% Similarity=-0.021 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+.+++.+...||+|+.|-.|.+.+....-+ +...++..++. .+.-+||++--+++....+.++. ...-
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~----~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE----RDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT----TTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec----CCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 44567778888899999999999999998765432 11112334443 23458999999998888876643 2223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+++++++|.||+..... .|..+.. -.+|..++-+...+... ....-+.++....+.+++.||+.|+
T Consensus 251 Plrl~~~g~~FR~E~~~-~Gr~~~Gl~R~reF~q~E~~~f~~pe-------~s~~~~~e~i~~~~~il~~LGL~~r 318 (425)
T 2dq3_A 251 PIYLTAYTPCYRREAGA-YGKDIRGIIRQHQFDKVELVKIVHPD-------TSYDELEKLVKDAEEVLQLLGLPYR 318 (425)
T ss_dssp CEEEEEEEEEECCCCSC-CSSSCSSSSSCSEEEEEEEEEEECGG-------GHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CeEEEEecCEecCCCCc-ccccccCcccccceEEeeEEEECCHH-------HHHHHHHHHHHHHHHHHHHCCCceE
Confidence 69999999999865321 0111111 23577777665554210 0011267899999999999998764
No 59
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=89.22 E-value=0.91 Score=49.22 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee--CCCC--ccccccchhhHHHHHHHHHHHhcCCCCC
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL--NPIS--KKFNTMRSTLIGSLVNNICYNLKRKLER 573 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~--NPis--~e~s~lR~SLlpgLL~~l~~N~~~~~~~ 573 (809)
++.+.+|++|...||.||-|-.++...--... ...+++. .|-. ...-+||+| |.|..-. -...+.
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~-----~~~F~~~~~~~~~~~~~~~yL~~S--pql~~k~--l~~~g~-- 109 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQATVTDIH-----LVPFETRFVGPGHSQGMNLWLMTS--PEYHMKR--LLVAGC-- 109 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCCCTT-----CCCCEEEECCSTTSCCEEEEECSC--SHHHHHH--HHHTTC--
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecCCCCCc-----cceEEEEecCcccccCCCEeecCC--HHHHHHH--HHHcCC--
Confidence 46788999999999999999999854211000 1122221 1311 123467776 3332221 111233
Q ss_pred eeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 574 IRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 574 i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
=|+||||+||+.++.. ..+-.|.++|-.=+++ .|+.++-..+|.++..+
T Consensus 110 ~rvyqIg~~FR~E~~~------~rH~pEFt~lE~e~af-------------~d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 110 GPVFQLCRSFRNEEMG------RYHNPEFTMLEWYRPH-------------YDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp CSEEEEEEEECCCCCB------TTBCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcceeCCCCc------ccccchhheeeeeeeC-------------CCHHHHHHHHHHHHHHH
Confidence 3899999999865432 3466789998877775 47999999999998865
No 60
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=88.51 E-value=0.72 Score=50.91 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcC-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKR-KLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~-~~~ 572 (809)
.+++.+.+|+.+...||+|+.|-.|...+....-+. .-.++..++ . ...+.-+||++.-+++....+.+... +.-
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~-d-~~~~~~~LrP~~~~~~~~~~~~~~~s~~~l 110 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT-S-SENREYCIKPMNCPGHVQIFNQGLKSYRDL 110 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEE-E-ETTEEEEECSCSHHHHHHHHTSSCCBGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeE-e-cCCceEEEcCCCCHHHHHHHHhhhhhhhhC
Confidence 456778889999999999999999999986543210 000122331 1 12345589999999999888766432 223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++++|++|++|+.+... + +.. -.+|..+..+-+.+.. .+ ....|.++......+++.||+
T Consensus 111 P~r~~~~g~~fR~E~~~---p-~~Gl~R~reF~q~d~~~f~~~--~~-----~~~e~~e~i~~~~~~~~~lgl 172 (401)
T 1evl_A 111 PLRMAEFGSCHRNEPSG---S-LHGLMRVRGFTQDDAHIFCTE--EQ-----IRDEVNGCIRLVYDMYSTFGF 172 (401)
T ss_dssp SEEEEEEEEEECCCCGG---G-CBTTTBCSEEEEEEEEEEECG--GG-----HHHHHHHHHHHHHHHHHTTTC
T ss_pred ChhhccccceecCCCCc---c-cccccccCcEEecceEEeCCH--HH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 59999999999865420 0 011 2467777776655521 10 112244788888889999997
No 61
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=88.29 E-value=1.5 Score=48.96 Aligned_cols=113 Identities=16% Similarity=0.075 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
.++.+.+|++|...||.|+-|-.+.+...- +. .+...+ + .....-.||+|---- ++.+. + + -.|+
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e----~~--~~~f~~-~-~~g~~~~L~~Spel~-~~~l~-~---g--~~rv 193 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAE----GG--SGLFGV-D-YFEKRAYLAQSPQLY-KQIMV-G---V--FERV 193 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC------------------------------------CHHH-HHHHH-H---H--HSEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCC----CC--ceeEEE-e-eCCCcEEeeeCHHHH-HHHHh-h---C--CCce
Confidence 346889999999999999999988865221 00 111222 1 111234677443322 24443 2 1 2699
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|++|+||+.++.+ +..+..|.+++.+-++|. -|+.|+-..+|.++..+
T Consensus 194 f~ig~~FR~E~~~-----~~RH~pEFtqle~e~~~~------------~d~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 194 YEVAPVWRMEEHH-----TSRHLNEYLSLDVEMGFI------------ADEEDLMRLEEALLAEM 241 (422)
T ss_dssp EEEEEC------------------CCEEEEEEEESC------------SSHHHHHHHHHHHHHHH
T ss_pred eEEeCceECCCCC-----CCcccceeEEeeeeeeCC------------CCHHHHHHHHHHHHHHH
Confidence 9999999876532 113456999999988872 16788877777776654
No 62
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=88.08 E-value=2.9 Score=47.48 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee-CCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL-NPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~-NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.+++... +.. ....... |-... .-+||+|-- |..- .=..-+. -|+
T Consensus 179 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~----Ga~--a~~F~~~~~~~~~-~~yLr~Spq--Lylk--~l~v~G~--~rV 245 (493)
T 3a74_A 179 LIIQSMRRYLDSHGYLEVETPMMHAVAG----GAA--ARPFITHHNALDM-TLYMRIAIE--LHLK--RLIVGGL--EKV 245 (493)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC----SSS--SCCCEEEETTTTE-EEEECSCSH--HHHH--HHHHTTC--CEE
T ss_pred HHHHHHHHHHHhCCeEEEECCeEEecCC----CCc--ccceEecccCCCc-eeEEecCHH--HHHH--HHhhccc--Cce
Confidence 4677899999999999999999986421 110 1222332 44333 346886633 3321 1112233 689
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||+||+.++.+ ..+..|.+++-+=+++ .|+.|+-..+|.++..+
T Consensus 246 yeig~~FR~E~~~------~rH~pEFT~lE~e~af-------------~d~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 246 YEIGRVFRNEGIS------TRHNPEFTMLELYEAY-------------ADFRDIMKLTENLIAHI 291 (493)
T ss_dssp EEEEEEECCCCCB------TTBCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHH
T ss_pred EEECccccCCCCC------cccCCceeEEEEEecC-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876543 2466799999887776 47999999999988764
No 63
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=87.22 E-value=3.3 Score=47.16 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHHH-HHHHHhcCCCCCee
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLVN-NICYNLKRKLERIR 575 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL~-~l~~N~~~~~~~i~ 575 (809)
+..+.+|++|...||.||-|-.+++... +.. ...... .|-... .-+||+|-- |.. .+. .-+. -|
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~----Ga~--ar~F~t~~~~~~~-~~yL~~Spq--Lylk~L~---v~G~--~r 253 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPG----GAS--ARPFITHHNALDL-DMYLRIAPE--LYLKRLV---VGGF--ER 253 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCC----SSC--CCCCEEEETTTTE-EEEECSCSH--HHHHHHH---HHTC--CE
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCC----CCc--ccceEeccCCCCc-eEEeccCHH--HHHHHHh---hcCC--Cc
Confidence 4677899999999999999999986421 110 122222 244433 346887643 322 211 1122 58
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||||+||+..+.+ ..+-.|.++|-+=+++ .|+.|+-..+|.++..+
T Consensus 254 VyeIg~~FR~E~~~------~rH~pEFt~lE~e~af-------------~d~~dlm~l~E~li~~~ 300 (504)
T 1e1o_A 254 VFEINRNFRNEGIS------VRHNPEFTMMELYMAY-------------ADYHDLIELTESLFRTL 300 (504)
T ss_dssp EEEEEEEECCCCCC------C-CCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEEcccccCCCCC------ccccCceeeeeeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 99999999876542 2466799999887776 47999999999888764
No 64
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=86.98 E-value=1 Score=50.81 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-hcCC--CCCCcEEeeCCC---CccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-FSQN--INNYPIELLNPI---SKKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~~~~--~~~~~i~L~NPi---s~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+.+.+.+|+.+...||+|+.|-.|.+.+.+.. -+.. ..++...+..-- ..+.-+||+..-+++....+.+.+
T Consensus 41 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s 120 (459)
T 1nj8_A 41 RRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKV 120 (459)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhh
Confidence 445678888999999999999999999887643 2110 012334443210 135568999999999999987743
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccC--Ccccee-EEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELK-KIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~-~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
+..-++++|++|.||+.+... +.. -.+|.. +..+-+.|...+ ....-+.++..+...++..||+.+
T Consensus 121 ~r~LP~rl~qig~~fR~E~~~-----~rGl~R~REF~qq~d~~~~~~~~~------~a~~e~~~~i~~~~~~~~~LGl~~ 189 (459)
T 1nj8_A 121 HTDLPIKIYQIVNTFRYETKH-----TRPLIRLREIMTFKEAHTAHSTKE------EAENQVKEAISIYKKFFDTLGIPY 189 (459)
T ss_dssp TTSCCCCEEEEECCBCCCCSC-----CBTTTBCSBCSCEEEEEEEESSHH------HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccCCeEEEEEccEecCccCC-----CCCceEeeeeeccCcEEEEECCHH------HHHHHHHHHHHHHHHHHHHCCCce
Confidence 223359999999999854320 111 235666 555443332100 011124457788889999999864
No 65
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=86.97 E-value=2 Score=47.76 Aligned_cols=140 Identities=8% Similarity=-0.040 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+.+++.+...||+|+.+-.|++.+....-+. ...++...+.+ +.-+||++--+++......+.. +..-
T Consensus 169 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~L 244 (421)
T 1ses_A 169 ELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 244 (421)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchhC
Confidence 445677778888899999999999999987654321 11123444432 3457999999998877766532 2223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
++++|++|.+|+...+. .|..+.. -.+|..+.-+........+ ....-|.++....+.++..||+.+
T Consensus 245 Plr~~~~g~~FR~E~g~-~Gr~~~GL~R~rqF~q~E~~~f~~p~~e-----~s~~~~~e~~~~~~~il~~LGL~~ 313 (421)
T 1ses_A 245 PLRYAGYAPAFRSEAGS-FGKDVRGLMRVHQFHKVEQYVLTEASLE-----ASDRAFQELLENAEEILRLLELPY 313 (421)
T ss_dssp SEEEEEEEEEECCCCSC-CCSCCCTTSSCSEEEEEEEEEEECSCHH-----HHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEecCCeecCCccc-cCcCCCCCeeeeeeeeeeEEEEeCCCHH-----HHHHHHHHHHHHHHHHHHHCCCce
Confidence 59999999999865321 1111121 2356666554443310000 011236789999999999999865
No 66
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=86.49 E-value=0.65 Score=54.06 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=59.3
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEe---------------------CCEEEEeCCCccCCCCcchhhh
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQK---------------------NNIFLVIPPAHRFDLEIEEDII 467 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~---------------------~~~~~v~vP~~R~DI~~~~Dli 467 (809)
++|.++.+.+.++||.+++.+++.+.|-.+|++++.. +..+++.+++.|.|...-.=|+
T Consensus 2 p~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~~~~~~d~i~ei~itpNR~D~ls~~GiA 81 (589)
T 3l4g_B 2 PTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLV 81 (589)
T ss_dssp CEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCCCSSSSSEEEEEECCTTCSTTSSHHHHH
T ss_pred CEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhcccccccccCCCCeEEEEecCCChhHHhHHHHHH
Confidence 4799999999999999999999999999999999631 1159999999999999999999
Q ss_pred hhhhhhhc
Q psy9573 468 EEIIRIYG 475 (809)
Q Consensus 468 EEIaR~yG 475 (809)
-|++-+.|
T Consensus 82 Rela~~~~ 89 (589)
T 3l4g_B 82 RGLQVFKE 89 (589)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99976555
No 67
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=85.63 E-value=2 Score=48.38 Aligned_cols=139 Identities=10% Similarity=0.020 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCC--CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNI--NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~--~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+.+++.+...||+|+.+-.|++.+....-+... .++..++. .+.-+||++--+++......+.. ...-
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~----d~~l~LrPt~e~~~~~~~~~~~~s~~~L 271 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE----DEDLYLIPTAEHPLAGMHANEILDGKDL 271 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT----TSSCEECSSTHHHHHHTTTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec----CCcEEEcCcCcHHHHHHHHhCccCchhC
Confidence 44567778888888999999999999998765432110 01223332 23458999999999888877653 2233
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+++++++|.||+..... .|..+.. -.+|..+.-+...... .. ...-|.++....+.++..||+.+.
T Consensus 272 Plr~~~~g~~FR~E~~~-~G~~~~GL~R~rqF~kvE~~~f~~p-e~------s~~~~~e~l~~~~~il~~LGL~yr 339 (455)
T 2dq0_A 272 PLLYVGVSPCFRKEAGT-AGKDTKGIFRVHQFHKVEQFVYSRP-EE------SWEWHEKIIRNAEELFQELEIPYR 339 (455)
T ss_dssp SEEEEEEEEEECCCTTC-SSCSCCSSSSCSEEEEEEEEEEECT-TT------HHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEecCcccCCCCc-cccccCCceeeeeeEeeeEEEecCH-HH------HHHHHHHHHHHHHHHHHHcCCceE
Confidence 59999999999865321 0000111 1355555544433311 01 112367889999999999998653
No 68
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=85.10 E-value=2.9 Score=46.68 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHH-HHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLV-NNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL-~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.++...-. +. ...+.+ |-. .....||.| |.|. +.+. . +. =|+
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~e---G~---~~~F~~-~~~-g~~~~L~~S--pqLylq~l~---~-g~--~rv 200 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVE---GG---STLFNL-DYF-GEQSFLTQS--SQLYLETCI---P-TL--GDV 200 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSS---CT---TSCCEE-EET-TEEEEECSC--SHHHHHHHH---H-HH--CSE
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCC---Cc---hhceee-ccC-CcccccCCC--hHHHHHHhh---h-cc--Cce
Confidence 46778999999999999999988654210 00 112222 111 112356655 2222 2221 1 22 479
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||+||+.++.. +..+..|.++|-.=+++ +|+.|+-..+|.++..+
T Consensus 201 feIg~~FR~E~~~-----t~RH~~EFT~lE~e~af-------------~d~~d~m~~~E~li~~~ 247 (435)
T 2xgt_A 201 FCIAQSYRAEKSR-----TRRHLAEYAHVEAECPF-------------ITLDDLMEKIEELVCDT 247 (435)
T ss_dssp EEEEEEECCCSSC-----CTTCCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEecceecCCCC-----ccccccceeEEEEEEec-------------CCHHHHHHHHHHHHHHH
Confidence 9999999865432 12466799999887776 47889888888887654
No 69
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=84.70 E-value=3.9 Score=46.75 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
+..+.+|++|...||.||-|-.+++... +.. .+..+.-.|-...+ .+||.| |.|..-.. ..-+. =|+|
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~g----Ga~-a~~F~t~~~~~~~~-~yL~~S--pqL~lk~l--iv~g~--~rVy 248 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIPG----GAV-AKPFITYHNELDMN-LYMRIA--PELYHKML--VVGGI--DRVY 248 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC----SSS-CCCCEEEETTTTEE-EEECSC--SHHHHHHH--HHTTC--CEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccCC----Ccc-ccceeeecccCCcc-eEeeCC--HHHHHHHH--HhcCc--CceE
Confidence 4577899999999999999999986421 110 01222223544333 478876 45543211 11233 4899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||++|+..+.+ ..+-.|.++|-+=++. .|+.|+-..+|.++..+
T Consensus 249 eig~~FR~E~~~------trH~pEFtmlE~e~af-------------~d~~dlm~l~E~li~~v 293 (521)
T 3bju_A 249 EIGRQFRNEGID------LTHNPEFTTCEFYMAY-------------ADYHDLMEITEKMVSGM 293 (521)
T ss_dssp EEEEEECCSCCB------TTBCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEcceeCCCCC------Cccchhhhhhhhhhhc-------------CCHHHHHHHHHHHHHHH
Confidence 999999876543 2466788888876665 48999999999888764
No 70
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=84.57 E-value=1.2 Score=52.52 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC--CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN--INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~--~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+.+|+.+...||+|+.|-.|.+.+....-+.. -.++... .. ...+.-+||+..-|++....+.+.+ .+.-
T Consensus 274 ~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d-~~~~~~~LrP~~~~~~~~~~~~~~~syr~L 351 (642)
T 1qf6_A 274 FRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TS-SENREYCIKPMNCPGHVQIFNQGLKSYRDL 351 (642)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EE-ETTEEEEECSSSHHHHHHHHTTSCEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-ee-cCCceEEecCCCCHHHHHHHHhhhhhcccc
Confidence 4567888899999999999999999999865432100 0022333 11 1233448999999999998877643 2223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
++|+|++|.||+.+... + +.. -.+|..+..+-+.+.. ++ ....|..+......+++.||+
T Consensus 352 Plr~~~~g~~fR~E~~g---~-~~GL~R~ReF~q~d~~~f~~~--~~-----~~~e~~~~i~~~~~i~~~lGl 413 (642)
T 1qf6_A 352 PLRMAEFGSCHRNEPSG---S-LHGLMRVRGFTQDDAHIFCTE--EQ-----IRDEVNGCIRLVYDMYSTFGF 413 (642)
T ss_dssp SEEEEEEEEEECCCCGG---G-CBTTTBCSEEEEEEEEEEECG--GG-----HHHHHHHHHHHHHHHHGGGTC
T ss_pred CeEEEEeccEEecCCCc---c-ccCCceeeeEEEccEEEEcCH--HH-----HHHHHHHHHHHHHHHHHHcCC
Confidence 59999999999865321 0 011 2467776666555421 10 112244566777777787876
No 71
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=84.32 E-value=4.2 Score=46.49 Aligned_cols=113 Identities=19% Similarity=0.121 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
+..+.+|++|...||.||-|-.+++... +.. ....+.-.|-+..++ +||.| |.|..-.. ..-+. =|+|
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~g----GA~-a~pF~t~~n~~~~~~-yL~~S--pqLylk~L--~v~G~--~rVy 276 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIPG----GAA-AKPFVTHHNALDMEM-FLRIA--PELYLKRL--IVGGF--ERVF 276 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCC----SSS-SCCCEEEETTTTEEE-EECSC--SHHHHHHH--HHTTC--SEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccCC----CCc-ccccccccccCCcce-ecccC--HHHHHHHH--HhcCC--CcEE
Confidence 4677899999999999999999985421 100 012222345444333 57766 44442111 11233 5899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||++|+..+.+ ..+-.|.++|-+=++. +|+.|+-..+|.++..+
T Consensus 277 eIg~~FR~E~~~------~rH~pEFtmlE~e~af-------------~d~~dlm~l~E~li~~v 321 (529)
T 4ex5_A 277 EINRNFRNEGVS------PRHNPEFTMMEFYAAY-------------TDYRWLMDFTERLIRQA 321 (529)
T ss_dssp EEEEEECCSCCB------TTBCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHHH
T ss_pred EeehheecCCCC------CCcccHhHhhhhhhhc-------------CCHHHHHHHHHHHHHHH
Confidence 999999876542 2456788888877765 48999999999998764
No 72
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=84.27 E-value=2.2 Score=48.66 Aligned_cols=191 Identities=9% Similarity=0.069 Sum_probs=109.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-hc--CCCCCCcEEeeCCC---CccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-FS--QNINNYPIELLNPI---SKKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~~--~~~~~~~i~L~NPi---s~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+.+.+.+++.+.. ||+|+.+-.|.+.+.+.. -+ +...++...+..-= ..+.-+||++.-+++....+.+..
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s 152 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRS 152 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcc
Confidence 44567788888888 999999999999886643 11 00002333442100 023458999999999999998853
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccC--Ccccee-EEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELK-KIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~-~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
...-++++|.+|.||+.+..+ +.. -.+|.. +..+-+.+..... ....+.++......++..||+.|
T Consensus 153 ~~~LPlr~~q~g~~fR~E~~~-----~rGl~R~REF~~q~e~~~~~~~~e~------a~~e~~~~l~~~~~i~~~Lgl~~ 221 (501)
T 1nj1_A 153 HTDLPMRFYQVVNTFRYETKH-----TRPLIRVREITTFKEAHTIHATASE------AEEQVERAVEIYKEFFNSLGIPY 221 (501)
T ss_dssp TTTCCEEEEEEEEEECCCCSC-----CBTTTBCSEEEEEEEEEEEESSHHH------HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccCCEEEEeecCEeeCCCCC-----CCCCceeEEEeeeeeEEEEECCHHH------HHHHHHHHHHHHHHHHHHCCCeE
Confidence 323369999999999854321 121 245766 6665333311000 11225567888889999999865
Q ss_pred eec---cCCCCc-CccE--EEEEE-CCE--EEEEEEeecHHHHHhCCCCC----------ceEEEEeehHHHh
Q psy9573 646 LKI---NNSILH-PNRS--ALIFK-KTK--NIGFIGEIHPILQQKYDLPL----------APIFFEVDALELQ 699 (809)
Q Consensus 646 ~~~---~~~~~h-Pgrs--A~I~~-~g~--~iG~iGelhP~vl~~~~i~~----------~v~~~El~l~~L~ 699 (809)
... ....++ .-.+ .+.++ +|+ .+|.+-.+-....+.+++.. +...+.+. +++.
T Consensus 222 ~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gig-eRli 293 (501)
T 1nj1_A 222 LITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLS-DRVI 293 (501)
T ss_dssp EEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEC-THHH
T ss_pred EEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHH-HHHH
Confidence 321 111222 1122 23333 343 45555444455667777641 13455565 7664
No 73
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=84.04 E-value=5.7 Score=45.21 Aligned_cols=144 Identities=8% Similarity=0.062 Sum_probs=82.8
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCC-------CCccccccchhhHHHHHHHHHHH
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNP-------ISKKFNTMRSTLIGSLVNNICYN 566 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NP-------is~e~s~lR~SLlpgLL~~l~~N 566 (809)
.+.+.+.+++.+...||+|+.+-.|++.+....-+ +...++..++... -..+.-+||++--+++....+..
T Consensus 204 ~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~e 283 (522)
T 3vbb_A 204 EQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDE 283 (522)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhh
Confidence 34556677778888999999999999998765432 1111344555432 12334588998888775544333
Q ss_pred hc-CCCCCeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeEe-eeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcC
Q psy9573 567 LK-RKLERIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVI-AYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIK 642 (809)
Q Consensus 567 ~~-~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~~-~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lg 642 (809)
+. ...-+++++++|.||+..... .|..+... .+|..+.-+. ++-.....+| .-|.++....+.++..||
T Consensus 284 i~s~~dLPlr~~~~s~cFR~Eags-~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~------~e~e~ml~~~e~il~~LG 356 (522)
T 3vbb_A 284 WLRPEDLPIKYAGLSTCFRQEVGS-HGRDTRGIFRVHQFEKIEQFVYSSPHDNKSW------EMFEEMITTAEEFYQSLG 356 (522)
T ss_dssp EECTTTCCEEEEEEEEEECSCCCC-----CCCSSSCSEEEEEEEEEEECSSTTHHH------HHHHHHHHHHHHHHHHTT
T ss_pred ecccccCCeeEEEecccccCCCCc-CCccCCCcceeeeeEEEEEEEEeCCChHHHH------HHHHHHHHHHHHHHHHcC
Confidence 22 222269999999999864321 00111111 2455544333 3321100011 127788899999999999
Q ss_pred Ceee
Q psy9573 643 LNFL 646 (809)
Q Consensus 643 i~~~ 646 (809)
+.|+
T Consensus 357 Lpyr 360 (522)
T 3vbb_A 357 IPYH 360 (522)
T ss_dssp CCEE
T ss_pred CceE
Confidence 8664
No 74
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=83.84 E-value=3.2 Score=47.64 Aligned_cols=141 Identities=9% Similarity=-0.036 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+-+++.+...||+|+.+-.+++.+....-+ +...++..++.+ +.-+||++-=+++....+.... ...-
T Consensus 278 ~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~----~~~~L~PT~E~~~~~l~~~~i~s~~~L 353 (536)
T 3err_A 278 ELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 353 (536)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT----TTEEECSSTHHHHHHHTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC----CCEEEccCCcHHHHHHHhcccccHhhC
Confidence 34556677888888999999999999998766532 111134556654 4458898888876655443321 2222
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+++++++|.+|+...+. .|..+... .+|..+.-+...-.. + + .....-|.++.+..+.+++.||+.|+
T Consensus 354 Plr~~~~~~~fR~E~gs-~Gr~~~GL~RvrqF~k~e~~~f~~p--e-~--e~s~~~~e~~~~~~~~i~~~LgLpyr 423 (536)
T 3err_A 354 PLRYAGYAPAFRSEAGS-FGKDVRGLMRVHQFHKVEQYVLTEA--S-L--EASDRAFQELLENAEEILRLLELPYR 423 (536)
T ss_dssp SEEEEEEEEEECCCTTC-TTSSCSTTSSCSEEEEEEEEEEECS--C-H--HHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CeeEEEecccccCCccc-cCCCCCCceeeeeeEEEEEEEEECC--c-h--HHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 59999999999864321 11111111 245555544332211 0 0 00122377888999999999998764
No 75
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=82.89 E-value=2.2 Score=48.25 Aligned_cols=191 Identities=8% Similarity=-0.080 Sum_probs=108.1
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-hcC--CCCCCcEEeeCCC---CccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-FSQ--NINNYPIELLNPI---SKKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~~~--~~~~~~i~L~NPi---s~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+.+.+.+|+.+...||+|+.|-.|.+.+.... -+. ...++...+..-- ..+.-+||+..-+++....+.+.+
T Consensus 47 ~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s 126 (477)
T 1hc7_A 47 WENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRS 126 (477)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhc
Confidence 445778888899999999999999998876533 110 0012334443210 034568999999999999988754
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHH-HhcCCee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF-FPIKLNF 645 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll-~~lgi~~ 645 (809)
++.-++++|++|.||+.+... .. -.+|..+..+=+.|...+. ....+-.+..+...++ ..||+.+
T Consensus 127 ~r~LP~rl~qig~vfR~E~~~------rGl~R~REF~q~d~~~~~~~~~~------ad~E~~~~l~~~~~i~~~~Lgl~~ 194 (477)
T 1hc7_A 127 WRDLPQLLNQWGNVVRWEMRT------RPFLRTSEFLWQEGHTAHATREE------AEEEVRRMLSIYARLAREYAAIPV 194 (477)
T ss_dssp GGGCCEEEEEEEEEECCCSSC------BTTTBCSEEEEEEEEEEESSHHH------HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred cccCCeeeEeecCEEeCCCCC------CCcceeEEEEEccEEEEeCCHHH------HHHHHHHHHHHHHHHHHHhcCCeE
Confidence 223359999999999865221 11 2466666666554421100 1112444555678888 7899865
Q ss_pred eec---cCCCCc-C--ccEEEEEE-CCE--EEEEEEeecHHHHHhCCCCC--------c--eEEEEeehHHHh
Q psy9573 646 LKI---NNSILH-P--NRSALIFK-KTK--NIGFIGEIHPILQQKYDLPL--------A--PIFFEVDALELQ 699 (809)
Q Consensus 646 ~~~---~~~~~h-P--grsA~I~~-~g~--~iG~iGelhP~vl~~~~i~~--------~--v~~~El~l~~L~ 699 (809)
... ...-|. . ....+.++ +|+ .+|.+-++.-+..+.+|+.. + ...+.+. +++.
T Consensus 195 ~~~~~~~~e~~~g~~~~~~ie~~~~dgr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~Gig-eRli 266 (477)
T 1hc7_A 195 IEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS-WRFI 266 (477)
T ss_dssp EEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEE-THHH
T ss_pred EEEeCChHHhcCCcccceEEEEEcCCCcEEEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHH-HHHH
Confidence 321 111222 1 12233333 333 34444444455566777641 1 2456666 7765
No 76
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=82.39 E-value=0.68 Score=50.28 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=61.8
Q ss_pred eEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEE-eCCEEEEeCC-----CccCCCCcchhhhhhhhhhhccCC
Q psy9573 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQ-KNNIFLVIPP-----AHRFDLEIEEDIIEEIIRIYGFEN 478 (809)
Q Consensus 409 ~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~-~~~~~~v~vP-----~~R~DI~~~~DliEEIaR~yGydn 478 (809)
++|.++.+.+.+++|.+++.+++.+.+..+|.++.. .+..+.+.++ +.|.|...-.=|+-|++-++|-.-
T Consensus 2 p~i~v~~~~L~~~lg~~~~~~el~~~~~~~G~~~~~~~d~iiei~it~~~~~pNR~D~lS~~GiARelaa~~~~~~ 77 (348)
T 2cxi_A 2 PKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWEENGKVYFKLDSKDTNRPDLWSAEGVARQIKWALGIEK 77 (348)
T ss_dssp CEEEEEHHHHHHHHTSCCCHHHHHHHHHHTTEEEEEEEEETTEEEEEEEECCTTCGGGSSHHHHHHHHHHHTTSSC
T ss_pred CEEEECHHHHHHHHCCCCCHHHHHhhhhhccCCHHHcCceEEEEEccCCCCCCChHHHhHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999999999853 3345789999 999999999999999999988653
No 77
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=81.96 E-value=5.5 Score=44.99 Aligned_cols=142 Identities=10% Similarity=0.003 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC--CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN--INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~--~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+.+.+-+++.+...||+|+.+-.+++.+....-+.. ..++..++.+. .+.-+|+++-=+.+....+.-+. ...-
T Consensus 211 ~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~sy~dL 288 (484)
T 3lss_A 211 QVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWFTELKE 288 (484)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEESCCSS
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhccccchhhC
Confidence 3456667777888899999999999999876543210 00234556543 34458888877776444332221 2222
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeEe-eeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVI-AYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~~-~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+++++++|.||+..... .|..+... .+|..+.-+. ++-..... ...-|..+....+.++..||+.|+
T Consensus 289 Plr~~~~s~cFR~Eags-~Grdt~GL~RvrqF~kvE~~~f~~pe~~~------s~~e~e~~~~~~e~il~~LGLpyr 358 (484)
T 3lss_A 289 PLKYAGMSTCFRKEAGA-HGRDTLGIFRVHQFDKIEQFVVCSPRQEE------SWRHLEDMITTSEEFNKSLGLPYR 358 (484)
T ss_dssp CEEEEEEEEEECCCTTC-SSSCCSTTSSCSEEEEEEEEEEECSSTTH------HHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CeeEEeecCccCCCCCc-CCcccCCcceeeeEEEEEEEEEeCcchHH------HHHHHHHHHHHHHHHHHHcCCcEE
Confidence 59999999999864321 01111111 2455554433 33211000 112377888999999999998764
No 78
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=78.32 E-value=5.1 Score=45.05 Aligned_cols=138 Identities=5% Similarity=-0.052 Sum_probs=85.5
Q ss_pred chHHHHHHHHHH-HhCCceEeeeccccChHHHhhhcCC--CCCCcEEeeCC-CCccccccchhhHHHHHHHHHHHhc-CC
Q psy9573 496 GYQSLFSIRHQL-AFADYQEVINYSFIEDSLEKDFSQN--INNYPIELLNP-ISKKFNTMRSTLIGSLVNNICYNLK-RK 570 (809)
Q Consensus 496 ~~~~~~~lr~~L-~~~Gf~Evitysf~s~~~~~~~~~~--~~~~~i~L~NP-is~e~s~lR~SLlpgLL~~l~~N~~-~~ 570 (809)
.+.+.+.+++.+ ...||+|+.|-.|.+.+....-+.. -.++...+... ...+.-+||++--|++....+.... +.
T Consensus 67 ~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r 146 (460)
T 3uh0_A 67 FNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYN 146 (460)
T ss_dssp HHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGG
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcccccc
Confidence 456778888989 8899999999999999876543211 01234444432 1234568999999999887665432 12
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHH-HhcCCe
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF-FPIKLN 644 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll-~~lgi~ 644 (809)
.-+++++++|.||+..... + +.. -.+|..+..+-+.+.. + ....-+.++......++ +.||+.
T Consensus 147 ~LPlrl~~~g~~fR~E~~~---~-~~GL~R~ReF~q~d~~~f~~~--e-----~~~~e~~~~i~~~~~~~~~~lGl~ 212 (460)
T 3uh0_A 147 ELPLRFSDFSPLHRNEASG---A-LSGLTRLRKFHQDDGHIFCTP--S-----QVKSEIFNSLKLIDIVYNKIFPFV 212 (460)
T ss_dssp GCSEEEEECCEEECCCCTT---T-CBTTTBCSEEEEEEEEEEECG--G-----GHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred ccCeEEEEecCeeeCCCCC---C-CCCceeeeeEEEeeEEEEcCH--H-----HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2259999999999865321 0 011 2457766666554421 0 01122445777888888 888875
No 79
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=77.84 E-value=7.8 Score=44.43 Aligned_cols=112 Identities=16% Similarity=0.179 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|++|...||.||-|-.+++..--.. .+.+.+ |-...+ .+||+|- .|..... +..+. -++|
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~egg------a~~F~v-~~~~~~-~yL~~Sp--ql~~k~l--l~~g~--~rVf 314 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGCSSEGG------SNIFEV-KYFDRK-AYLAQSP--QLYKQMA--IMGDF--RKVF 314 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCT--HHHHHHH--HTTTC--CEEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecccCCCC------cceeEE-ecCCCc-eEeccCH--HHHHHHH--HhcCc--CcEE
Confidence 3567789999999999999999987642100 111111 222223 3788774 4442211 12333 5899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
|||+||+..+.. +..+..|.++|-.=++= ..|+.++-..+|.++..
T Consensus 315 eI~~~FR~E~~~-----t~RHl~EFtmlE~e~af------------~~d~~d~m~~~E~li~~ 360 (548)
T 3i7f_A 315 EVGPVFRAENSN-----TRRHLTEFEGLDIEMEI------------VENYHECIDVMEKLFTF 360 (548)
T ss_dssp EEEEECCCSCCC-----SSSCCSCEEEEEEEEEC------------SSCTHHHHHHHHHHHHH
T ss_pred EEeeeEecCCCC-----CCCcchhhhchhhhhhh------------hcCHHHHHHHHHHHHHH
Confidence 999999865431 12356788888764431 12677888888777754
No 80
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=77.81 E-value=7.1 Score=43.59 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
+..+.+|++|...||.||-|-.+++..- + + . .+.+.+... ....+||+| |.|.. +.-...+. -++|
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~~~-e--g-~--~~~f~~~~~--~~~~yL~~S--pql~~--q~l~~~g~--~rvf 207 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIATAT-E--G-G--TELFPMKYF--EEDAFLAQS--PQLYK--QIMMASGL--DRVY 207 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS-S--C-S--SSCCEEEET--TEEEEECSC--SHHHH--HHGGGTTC--CEEE
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecCCC-C--C-C--ccceeEeeC--CccEEEecC--hHHHH--HHHHhcCC--CceE
Confidence 4678899999999999999999987531 0 0 0 122222211 122456665 34432 22232333 5899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCC-HHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNID-YFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~d-f~dlKg~le~ll~~l 641 (809)
|||+||+.++.+ +..+..|.++|-+=+++ .| +.|+-..+|.++..+
T Consensus 208 ~i~~~FR~E~~~-----t~RH~pEFt~le~e~a~-------------~~~~~d~m~~~E~li~~~ 254 (438)
T 3nem_A 208 EIAPIFRAEEHN-----TTRHLNEAWSIDSEMAF-------------IEDEEEVMSFLERLVAHA 254 (438)
T ss_dssp EEEEEECCCSSC-----CTTCCSEEEEEEEEEES-------------CSSHHHHHHHHHHHHHHH
T ss_pred EEcceEECCCCC-----Ccccccceeeeeeeecc-------------CccHHHHHHHHHHHHHHH
Confidence 999999865432 12355689999887776 35 889888888887653
No 81
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=77.72 E-value=13 Score=43.02 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEee-CCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELL-NPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~-NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.++...- . +. .+ ..+. |-...++-.||+| |.|..-+. ..-+. =|+
T Consensus 149 ~i~~~iR~fl~~~gF~EVeTPiL~~s~~-e--GA---r~-F~v~~~~~~~~~y~L~qS--PQl~kq~L--mv~G~--~rv 215 (580)
T 1l0w_A 149 RVIKAIWDFLDREGFVQVETPFLTKSTP-E--GA---RD-FLVPYRHEPGLFYALPQS--PQLFKQML--MVAGL--DRY 215 (580)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS-S--SS---CC-CEEECTTSTTEEEECCSC--SHHHHHHH--HHTTC--SEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCC-C--CC---CC-ccccccccCCceeECccC--HHHHHHHH--HHhcc--CCe
Confidence 4677899999999999999999985321 0 11 11 2221 2111223347765 55544432 11333 489
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||+||+..+.+ +.-++ |.++|-+=++. +|+.|+-.++|.++..+
T Consensus 216 fqI~~~FR~E~~~-----~~r~p-EFT~lE~e~af-------------~d~~dvm~~~E~li~~i 261 (580)
T 1l0w_A 216 FQIARCFRDEDLR-----ADRQP-DFTQLDLEMSF-------------VEVEDVLELNERLMAHV 261 (580)
T ss_dssp EEEEEEECCCCCC-----SSCCS-EEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEeceeeCCCCC-----CCcCC-CccceeeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 9999999876542 12245 89998877775 47889988888887654
No 82
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=77.03 E-value=4.1 Score=46.47 Aligned_cols=177 Identities=9% Similarity=0.038 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh----h-cCCCCCCcEEeeCCC---CccccccchhhHHHHHHHHHHHh
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD----F-SQNINNYPIELLNPI---SKKFNTMRSTLIGSLVNNICYNL 567 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~----~-~~~~~~~~i~L~NPi---s~e~s~lR~SLlpgLL~~l~~N~ 567 (809)
.+.+.+.+++.+...||+|+.+-.|.+.+.... + ... ++...+..-- ..+.-+||++--|++....+..+
T Consensus 58 ~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~--~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i 135 (518)
T 3ial_A 58 ENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFE--AECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWV 135 (518)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHG--GGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCccccc--ccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhh
Confidence 445677888888999999999999998886532 1 001 2334443210 12345899999999999887765
Q ss_pred c-CCCCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHH-HhcCC
Q psy9573 568 K-RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF-FPIKL 643 (809)
Q Consensus 568 ~-~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll-~~lgi 643 (809)
. +..-++++|++|.||+..... +.. -.+|..+..+-..|..... ....+..+....+.++ +.||+
T Consensus 136 ~SyrdLPlrl~q~~~~fR~E~~~-----~~GL~R~REF~q~e~h~f~~~~e~------a~~e~~~~l~~~~~i~~~~LGl 204 (518)
T 3ial_A 136 RSYKDLPLKIHQTCTIFRHETKN-----TKPLIRVREIHWNEAHCCHATAED------AVSQLSDYWKVIDTIFSDELCF 204 (518)
T ss_dssp CBGGGCCEEEEEEEEEECTTCCS-----CBTTTBCSEEEEEEEEEEESSHHH------HHHHHHHHHHHHHHHHTTTTCC
T ss_pred cccccCCeEEEEEeceecCCCCC-----CCCCceeeEEEEeeEEEEECCHHH------HHHHHHHHHHHHHHHHHHhcCC
Confidence 3 222359999999999865221 011 2356666666555421000 1122445666678889 88998
Q ss_pred eeeeccC---CCC---cCccEEEEEEC-CE--EEEEEEeecHHHHHhCCCC
Q psy9573 644 NFLKINN---SIL---HPNRSALIFKK-TK--NIGFIGEIHPILQQKYDLP 685 (809)
Q Consensus 644 ~~~~~~~---~~~---hPgrsA~I~~~-g~--~iG~iGelhP~vl~~~~i~ 685 (809)
.+..... ..+ +-+-..++++. |+ .+|.+=.+.-...+.|+|.
T Consensus 205 p~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~i~ 255 (518)
T 3ial_A 205 KGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDIL 255 (518)
T ss_dssp CCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCC
T ss_pred cEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcCcE
Confidence 6532111 111 11112333332 23 4454433334566888875
No 83
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=76.08 E-value=11 Score=42.67 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|++|...||.||-|-.+++..- ... .+...+.. ....-.||.| |.|.. +.=...+ --|+|
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~~----~~g--a~~f~~~~--~~~~~~L~~S--pql~~--k~l~~~g--~~rvy 248 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAPS----EGG--SSVFEVTY--FKGKAYLAQS--PQFNK--QQLIVAD--FERVY 248 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS----SSS--SCCCEEEE--TTEEEEECSC--THHHH--HHHHHTT--CCEEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEecC----CCC--cccceecc--CCccEEcccC--hHHHH--HHHHhcC--CCceE
Confidence 4577789999999999999999987421 111 12333322 2234577754 23321 1111222 26999
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEee-eCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIA-YGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~-~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
|||+||+.++.. +..+..|.+++.+=+ .| .|+.|+-.++|.++..+
T Consensus 249 ~ig~~FR~E~~~-----~~Rh~pEFt~le~e~af~-------------~~~~dlm~l~E~ll~~l 295 (487)
T 1eov_A 249 EIGPVFRAENSN-----THRHMTEFTGLDMEMAFE-------------EHYHEVLDTLSELFVFI 295 (487)
T ss_dssp EEEEEECCCCCC-----CTTCCSEEEEEEEEEECS-------------SCTHHHHHHHHHHHHHH
T ss_pred EEeccEecCCCC-----CCccchhhhhhhhhhhhh-------------cCHHHHHHHHHHHHHHH
Confidence 999999865432 123445888887733 23 24567777777776543
No 84
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=75.99 E-value=15 Score=42.47 Aligned_cols=112 Identities=10% Similarity=0.114 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEe-eCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIEL-LNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L-~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.++...- . +. .+ ..+ .|-...++-.||.| |.|..-+. ..-+. =|+
T Consensus 143 ~i~~~iR~fl~~~gFlEVeTPiL~~s~~-e--GA---r~-F~v~~~~~~~~~y~L~qS--PQl~kq~L--mv~G~--~rv 209 (585)
T 1c0a_A 143 KITSLVRRFMDDHGFLDIETPMLTKATP-E--GA---RD-YLVPSRVHKGKFYALPQS--PQLFKQLL--MMSGF--DRY 209 (585)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS-S--SS---CC-CEEECSSSTTCEEECCSC--SHHHHHHH--HHTTC--CEE
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEecCCC-C--CC---cc-ceecccccCCceEeCccC--HHHHHHHH--HhcCC--Cce
Confidence 4677899999999999999999985321 0 11 11 122 12112233347765 55544422 12333 489
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||+||+..+.+ +.-++ |.++|-+=++. +|+.|+-.++|.++..+
T Consensus 210 fqI~~~FR~E~~~-----t~r~p-EFT~lE~e~af-------------~d~~dvm~~~E~li~~i 255 (585)
T 1c0a_A 210 YQIVKCFRDEDLR-----ADRQP-EFTQIDVETSF-------------MTAPQVREVMEALVRHL 255 (585)
T ss_dssp EEEEEEECCCCCB-----TTBCS-EEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEeceeecCCCC-----CCcCc-ccceeeeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 9999999865542 12245 89998877775 47889988888887654
No 85
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=74.28 E-value=16 Score=42.54 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=70.5
Q ss_pred HHHHHHHHHHH-hCCceEeeeccccChHHHhhhcCCCCCCcEEee-CCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 498 QSLFSIRHQLA-FADYQEVINYSFIEDSLEKDFSQNINNYPIELL-NPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 498 ~~~~~lr~~L~-~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~-NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
++.+.+|++|. ..||.||-|-.++.... . + .....+. |- ....-.||+| |.|..-+. ..-+. =+
T Consensus 153 ~i~~~iR~f~~~~~gF~EVeTPiL~~st~-~--G----A~~F~v~~~~-~g~~~~L~qS--pql~kq~l--~v~g~--~r 218 (617)
T 4ah6_A 153 QMVMKMREYLCNLHGFVDIETPTLFKRTP-G--G----AKEFLVPSRE-PGKFYSLPQS--PQQFKQLL--MVGGL--DR 218 (617)
T ss_dssp HHHHHHHHHHHTTSCCEECCCCSSBCCCC-S--S----SCCCEEECSS-TTCEEECCSS--TTHHHHHH--HHTSC--SE
T ss_pred HHHHHHHHHHHhcCCeEEEeCCeeccCCC-C--C----CcCceecccc-CCcccccccC--HHHHHHHH--Hhccc--Cc
Confidence 46778999997 69999999999985311 0 0 1111221 21 1223367776 34433221 11233 48
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||||+||+.++.. ...-.|.++|-.=++. +|+.|+-..+|.++..+
T Consensus 219 vfqi~~~FR~E~~~------t~r~pEFt~lE~e~af-------------~d~~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 219 YFQVARCYRDEGSR------PDRQPEFTQIDIEMSF-------------VDQTGIQSLIEGLLQYS 265 (617)
T ss_dssp EEEEEEEECCCSSC------SSSCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEEEhheecccCC------CCcCcceecceeeecC-------------CCHHHHHHHHHHHHHHH
Confidence 99999999865432 1234688888877775 47999999999999875
No 86
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=72.46 E-value=15 Score=41.18 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHH-HHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVN-NICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~-~l~~N~~~~~~~i~l 576 (809)
+..+.+|++|...||.||-|-.++...-. +. .....+ |.... ..+||.|- .|.. .+.- +. -++
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~e---Gg---~~~f~~-~~~~~-~~~L~~Sp--qL~lq~l~~----g~--~rV 224 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCE---GG---STLFKL-QYFNE-PAYLTQSS--QLYLESVIA----SL--GKS 224 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------------CCCCEE-EETTE-EEEECSCC--HHHHHTTHH----HH--SSE
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCC---Cc---cccccc-cccCC-CcccccCH--HHHHHHHHh----cc--CcE
Confidence 46788999999999999999998764311 00 111111 11111 22455553 2211 1111 11 468
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
||||+||+.++.. +..+..|.++|-.=+++ .|+.|+-..+|.++..+
T Consensus 225 yeig~~FR~E~~~-----t~rH~pEFtmlE~e~af-------------~d~~d~m~~~E~li~~~ 271 (456)
T 3m4p_A 225 FCMLSSYRAEQSR-----TVRHLAEYLHLEAELPF-------------ISFEDLLNHLEDLVCTV 271 (456)
T ss_dssp EEEEEEECCCSCC-----CSSCCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred EEEEhheecCCCC-----CCcchHHHHHhHHHHhc-------------CCHHHHHHHHHHHHHHH
Confidence 9999999865431 12356789999887776 47889888888887653
No 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=71.76 E-value=28 Score=39.43 Aligned_cols=142 Identities=8% Similarity=-0.050 Sum_probs=85.2
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCC-CcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINN-YPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~-~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~ 571 (809)
.+.+.+.+++.+...||+|+.+-.|++.+....-+ +...+ +..++..- ..+--+||++-=+.+....+.... ...
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l~~~~i~s~~~ 300 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGYFMDHSVAFRD 300 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHHHTTEEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHHHhhccCCccc
Confidence 44567777888889999999999999998765432 11012 34444211 122347999988888766655432 222
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeEeeeCCCC-CCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVIAYGPLL-EPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~~~~G~~~-~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
-+++++++|.||+.... .|..+... .+|..+.-+...-... .. ...-|.++....+.++..||+.|+
T Consensus 301 LPlrl~~~s~~FR~Ea~--~G~d~~GL~RvhqF~kvE~~~f~~pe~e~------s~~~~e~~l~~~~~il~~LgLpyr 370 (501)
T 1wle_A 301 LPIRMVCSSTCYRAETD--TGKEPWGLYRVHHFTKVEMFGVTGPGLEQ------SSELLEEFLSLQMEILTELGLHFR 370 (501)
T ss_dssp CSEEEEEEEEEECCCCS--CC--CCSSSSCSEEEEEEEEEEECSSHHH------HHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeeEEeccCcccCCCC--CCCCCcCceeeeeeeeeeEEEEeCCcHHH------HHHHHHHHHHHHHHHHHHCCCcEE
Confidence 25999999999985432 11111111 2454444333322100 00 112377899999999999998664
No 88
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.46 E-value=9.2 Score=43.17 Aligned_cols=137 Identities=7% Similarity=0.007 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC--CCCCCcEEeeCCCCccccccch-hhHHHHHHHHHHHh-c----
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ--NINNYPIELLNPISKKFNTMRS-TLIGSLVNNICYNL-K---- 568 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~--~~~~~~i~L~NPis~e~s~lR~-SLlpgLL~~l~~N~-~---- 568 (809)
+.+.+.+++.+...||+|+.+-.|++.+....-+. ...++...+.+. .+.-+|++ +=.| +- .+-++. .
T Consensus 189 ~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~p-l~-~l~~~ei~~S~y 264 (485)
T 3qne_A 189 QALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQP-IS-AYHAGEWFESPA 264 (485)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHH-HH-HHTTTCEESSHH
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHH-HH-HHHhccccccch
Confidence 34566677778889999999999999987654321 001344556542 22335544 4333 22 222231 1
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+.. +++++++|.||+..... .|..+... .+|..+.-+...-. ++ ....-|.++....+.++..||+.|+
T Consensus 265 ~dL-Plr~~~~s~cfR~Eag~-~Grdt~GL~RvhqF~kvE~~~f~~--pe-----~s~~e~e~ml~~~e~il~~LgLpyr 335 (485)
T 3qne_A 265 EQL-PVRYAGYSSCFRREAGS-HGKDAWGIFRVHAFEKIEQFVLTE--PE-----KSWEEFDRMIGCSEEFYQSLGLPYR 335 (485)
T ss_dssp HHC-CEEEEEEEEEECSCCC------CCSSSSCSEEEEEEEEEEEC--GG-----GHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hcC-CeeEEEecccccCCCCC-CCccCCCceeeeeeeeeeEEEEeC--HH-----HHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 122 59999999999854321 00011111 24554443332211 10 0112377888999999999998664
No 89
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=64.44 E-value=6.2 Score=43.92 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=49.3
Q ss_pred ccccccCCCEEEEEcCCCCeEEecCC-eeeee-------------cCCcEEEEeCCceeEecccccCccceeecCCc
Q psy9573 271 FDLSKISGELNIRWGNIGETIKISND-LIIKI-------------DKNIGIISDNFKIISLSGIINGFDASVTLNTK 333 (809)
Q Consensus 271 fD~dki~~~i~vr~a~~~e~~~~L~~-~~~~l-------------~~~~lvi~D~~~~lslagi~g~~~s~v~~~T~ 333 (809)
+|++++..+++||.-++|+.|. ++. ...+| .+..+++++++++++++|+.-+...+++++|+
T Consensus 348 ~~~~~~~~~l~vR~r~~Gd~~~-~g~~g~kklk~~~~d~kiP~~~R~~~pll~~~~~ii~v~g~~~~~~~~~~~~~~ 423 (433)
T 1ni5_A 348 IRPPRADEAVSVRFKAPGLLHI-VGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAEGENG 423 (433)
T ss_dssp ECCCCTTSCEEEESCCCSEECB-TTCSSCEEHHHHHHHHTCCGGGTTSSCEEEETTEEEEETTTEEBGGGBCSSSCC
T ss_pred cCcccCCCCEEEEecCCCcEee-cCCCCCchHHHHHHHcCCCHHHHCCeeEEEECCEEEEEeceeecceeccCCCCc
Confidence 7888988899999999987766 543 12222 35778999999999999998888889999877
No 90
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=62.34 E-value=10 Score=43.16 Aligned_cols=139 Identities=7% Similarity=-0.091 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhh-hcC-CC-CCCcEEeeCCCC---ccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKD-FSQ-NI-NNYPIELLNPIS---KKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~-~~~-~~-~~~~i~L~NPis---~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+.+.+.+++.+...||+|+.|-.|.+.+.... -+. .. .++...+...-. .+.-+||++--|++....+..+.
T Consensus 64 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~S 143 (519)
T 4hvc_A 64 WEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQS 143 (519)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccc
Confidence 445677888888999999999999999987653 111 00 012233332111 23458999999999998877653
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccC--CccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc-CCee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVS--GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI-KLNF 645 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~--~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l-gi~~ 645 (809)
+..-+++++++|.||+..... +.. -.+|..+..+-+.+..... ...-+..+....+.+++.+ |+.+
T Consensus 144 yrdLPlrl~q~g~~fR~E~~~-----~~Gl~R~ReF~q~e~h~~~~~~e~------a~~E~~~~l~~~~~i~~~ll~lp~ 212 (519)
T 4hvc_A 144 HRDLPIKLNQWCNVVRWEFKH-----PQPFLRTREFLWQEGHSAFATMEE------AAEEVLQILDLYAQVYEELLAIPV 212 (519)
T ss_dssp GGGCCEEEEEEEEEECCCCSC-----CBTTTBCSEEEEEEEEEEESSHHH------HHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cccCCeEEEEEcCeeeCCCCC-----CCCCcceeEEEEeeEEEEecCHHH------HHHHHHHHHHHHHHHHHHhcCCcc
Confidence 122359999999999865221 011 2356666555442311000 1112455667777888886 7754
No 91
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=57.85 E-value=31 Score=39.15 Aligned_cols=83 Identities=10% Similarity=0.123 Sum_probs=51.9
Q ss_pred ccccchhhHHHHH----HHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCC
Q psy9573 548 FNTMRSTLIGSLV----NNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENR 623 (809)
Q Consensus 548 ~s~lR~SLlpgLL----~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~ 623 (809)
.-+||+...+++. +.+..+ +++. +++++++|.+|+.....-.+ -.-.+|..+..+-+-+.. .
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy-~r~L-P~rl~qig~~FR~E~~pr~G---L~R~REF~q~d~~~f~~~---------e 247 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDAT-SRKL-GFGIAQIGKAFRNEITPRNF---IFRVREFEQMEIEYFVRP---------G 247 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHH-TCCS-SEEEEEEEEEEBCCSSCCTG---GGSCSEEEEEEEEEEECG---------G
T ss_pred ceeecccchhHHHHHHHHHHHhc-CCCC-CEEEEEeeceeeCCCCCCCC---CCcccceEEeeEEEEECH---------H
Confidence 4589999999984 333333 1344 59999999999865221000 012356666655444421 2
Q ss_pred cCC--HHHHHHHHHHHHHhcCCe
Q psy9573 624 NID--YFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 624 ~~d--f~dlKg~le~ll~~lgi~ 644 (809)
... +.++......++..||+.
T Consensus 248 ~~~~~~~~~i~~~~~i~~~LGl~ 270 (505)
T 1ati_A 248 EDEYWHRYWVEERLKWWQEMGLS 270 (505)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 222 778889999999999974
No 92
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=47.75 E-value=25 Score=30.35 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=34.4
Q ss_pred eEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q psy9573 768 KSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKL 807 (809)
Q Consensus 768 kSl~~rl~~~~~~rTLt~~ev~~~~~~ii~~L~~~~~a~l 807 (809)
..||||+ ++..+.+|.++|.+.....-..|++.+|.++
T Consensus 45 ~aVTFrV--~~N~~n~taadVa~~a~~~k~~Le~~~G~~I 82 (91)
T 2qt7_A 45 PALTFRI--RHNEQNLSLADVTQQAGLVKSELEAQTGLQI 82 (91)
T ss_dssp TEEEEEE--CCCTTCCCHHHHHHHHHHTHHHHHHHHTSCE
T ss_pred ceEEEEe--ccCcccCCHHHHHHHHHHhHHHHHHhhCeEE
Confidence 3799998 7888999999999999999999999999875
No 93
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=41.85 E-value=40 Score=27.12 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=30.6
Q ss_pred ccCHHHHHHHHHhcCCEEEE-eCCE--E------EEeCCCccCCCCcchhhhhhhhhhhcc
Q psy9573 425 KLTNQEISNIFIRLKFHFIQ-KNNI--F------LVIPPAHRFDLEIEEDIIEEIIRIYGF 476 (809)
Q Consensus 425 ~i~~~~i~~iL~~Lgf~v~~-~~~~--~------~v~vP~~R~DI~~~~DliEEIaR~yGy 476 (809)
.++..|+.++|++.||.... .+.. | .++||.++-| ...-++..|.+-.|.
T Consensus 4 p~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~~~~~vP~h~~e--i~~g~lk~Ilkqagl 62 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKGGHRLYTHPDGRIVVVPFHSGE--LPKGTFKRILRDAGL 62 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEETTEEEEECTTSCEEEEECSSSS--CCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCEEeCCCCCCceEecCCCCeeEecCCcCc--CCHHHHHHHHHHcCC
Confidence 46788999999999998642 2221 1 4556655443 344455555555543
No 94
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=39.63 E-value=34 Score=40.37 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=39.2
Q ss_pred CccccccchhhHHHH----HHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeE
Q psy9573 545 SKKFNTMRSTLIGSL----VNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAV 607 (809)
Q Consensus 545 s~e~s~lR~SLlpgL----L~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~ 607 (809)
....-+|||-..+|+ -+.+..|. ++. ++++++||++|+..-..-.| -.-.+|..+..+
T Consensus 236 ~~~~~~LRPEtaqg~f~~f~r~~~~~~-~~L-P~~~aqiG~~fRnEisPr~G---LlR~REF~q~d~ 297 (693)
T 2zt5_A 236 GNMPGYLRPETAQGIFLNFKRLLEFNQ-GKL-PFAAAQIGNSFRNEISPRSG---LIRVREFTMAEI 297 (693)
T ss_dssp SSSEEEECSCSHHHHHTTHHHHHHHTT-TCS-CEEEEEEEEEECCCSSCCSG---GGSCSEEEEEEE
T ss_pred CCcceeeccccchHHHHHHHHHHHHhC-cCC-CEEEEeecceecCCCCCCCC---CccceeeEEccc
Confidence 556778999999999 66777763 344 49999999999864221000 012467777666
No 95
>2qw7_A Carbon dioxide concentrating mechanism protein CC; pentamer, structural protein; HET: GOL; 2.40A {Synechocystis SP} SCOP: b.40.15.1
Probab=37.51 E-value=66 Score=28.75 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=33.0
Q ss_pred eEEEEEEEEeeCCC--CCceeEEEE-ecCC---ceEEEEeCCCcccCCCEEEEEe
Q psy9573 45 IIIGKIINIIKHPD--IDNFNICKV-DTYK---NILDIVCNIPNIRVGLKVPCAI 93 (809)
Q Consensus 45 vvvg~i~~~~~hp~--ad~L~~~~v-~~g~---~~~~iv~ga~n~~~g~~v~~a~ 93 (809)
-|+|.|++-.+||. ..||-+++. +... ....|..-.-...+|++|.++.
T Consensus 5 kViG~VvsT~K~~~L~G~kLlvVq~~~~~~~~~g~~~VAvD~VGAG~Ge~Vlv~~ 59 (111)
T 2qw7_A 5 KVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVAR 59 (111)
T ss_dssp EEEEEEECSEECGGGTTCCEEEEEEECTTSCEEEEEEEEEESSCCCTTCEEEEEE
T ss_pred EEEEEEEEeeecCCCCCcEEEEEEEeccCCCcCCCEEEEEECCCCCCCCEEEEeC
Confidence 58999999999994 556666663 3222 2344555555567888988875
No 96
>2hd3_A Ethanolamine utilization protein EUTN; beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Escherichia coli} SCOP: b.40.15.1 PDB: 2z9h_A
Probab=31.16 E-value=76 Score=27.98 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=32.4
Q ss_pred eEEEEEEEEeeCCC--CCceeEEE-EecCC---ceEEEEeCCCcccCCCEEEEEe
Q psy9573 45 IIIGKIINIIKHPD--IDNFNICK-VDTYK---NILDIVCNIPNIRVGLKVPCAI 93 (809)
Q Consensus 45 vvvg~i~~~~~hp~--ad~L~~~~-v~~g~---~~~~iv~ga~n~~~g~~v~~a~ 93 (809)
-|+|.|.+-.|||. ..||-+++ +|... ....|..-.-...+|++|.++.
T Consensus 5 kViG~VvaT~K~~~L~G~kLlvVq~~d~~~~~~g~~~VAvD~VGAG~Ge~Vlv~~ 59 (103)
T 2hd3_A 5 VVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVS 59 (103)
T ss_dssp EEEEEEECSSBCGGGTTCEEEEEEEECTTSCEEEEEEEEEESSCCCTTCEEEEEE
T ss_pred EEEEEEEEeeecCCCCCcEEEEEEEeccCCCcCCCEEEEEECCCCCCCCEEEEeC
Confidence 58999999999994 45666666 32221 2345555555567888988874
No 97
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=30.87 E-value=51 Score=35.36 Aligned_cols=175 Identities=6% Similarity=-0.074 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCC-----------------------CCcccccc
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNP-----------------------ISKKFNTM 551 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NP-----------------------is~e~s~l 551 (809)
+.+.+.+++ ....||+|+.+-.+++.+..+.-+ ++-.++...+... +.++--+|
T Consensus 68 ~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~L 146 (346)
T 3mf2_A 68 ERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVL 146 (346)
T ss_dssp HHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEE
T ss_pred HHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEEE
Confidence 345556666 667899999999999998766531 1000233333211 11223578
Q ss_pred chhhHHHHHHHHHHH-hcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHH
Q psy9573 552 RSTLIGSLVNNICYN-LKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDL 630 (809)
Q Consensus 552 R~SLlpgLL~~l~~N-~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dl 630 (809)
.++-=|.+....+.- ..... ++++.+.|.||+..... + -.-..|..++-++..+.. + ....-...+
T Consensus 147 iPtacvpl~~~~~~eg~i~~~-plr~~~~g~CFR~EaS~--G---L~RvhqF~kvE~v~~~tp--E-----qs~~e~e~l 213 (346)
T 3mf2_A 147 SPAACYPVYPIAASRGPLPKG-GLRFDVAADCFRREPSK--H---LDRLQSFRMREYVCIGTP--D-----DVSDFRERW 213 (346)
T ss_dssp CSSSSTTHHHHHHTTCSCCTT-CEEEEEEEEEECCCCCS--S---TTSCSEEEEEEEEEEESH--H-----HHHHHHHHH
T ss_pred cccccHHHHHHHccCCccccc-CeEEEEECCccCCcCCC--C---CeeeeeeEEEEEEEEeCH--H-----HHHHHHHHH
Confidence 899889998887742 32233 59999999999865420 1 012357777777766631 0 011225567
Q ss_pred HHHHHHHHHhcCCeee--eccCCCCcC------------ccEEEEEE----CC--EEEEEEEeecHHHHHhCCCC
Q psy9573 631 KNDLENLFFPIKLNFL--KINNSILHP------------NRSALIFK----KT--KNIGFIGEIHPILQQKYDLP 685 (809)
Q Consensus 631 Kg~le~ll~~lgi~~~--~~~~~~~hP------------grsA~I~~----~g--~~iG~iGelhP~vl~~~~i~ 685 (809)
....+.+++.||+.|+ ....++|-. .++-++.+ .+ ..|+-+--.----.+.++|.
T Consensus 214 ~~~ae~il~~LgLpyrv~~~~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfqarR~~Ir 288 (346)
T 3mf2_A 214 MVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQ 288 (346)
T ss_dssp HHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCB
T ss_pred HHHHHHHHHHCCCCEEEEEccCCCcCcccchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchhhhhhcce
Confidence 8888899999998653 234555542 13455544 12 35555555444445666664
No 98
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=28.25 E-value=74 Score=27.81 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=32.2
Q ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCccc
Q psy9573 769 SFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKL 807 (809)
Q Consensus 769 Sl~~rl~~~~~~rTLt~~ev~~~~~~ii~~L~~~~~a~l 807 (809)
.||||+ ++.++.||.++|.+....+-..|++..|.++
T Consensus 53 aVTFrV--~~N~~n~taadVA~~a~~~K~~Le~~tG~~I 89 (99)
T 4hti_A 53 AVTFKV--SANVQNVTTEDVEKATVDNKDKLEETSGLKI 89 (99)
T ss_dssp EEEEEE--CCCTTCCCHHHHHHHHHHTHHHHHHHHSSCE
T ss_pred eEEEEe--ccCCCCCCHHHHHHHHHHHHHHHHHhhCeEE
Confidence 688877 5666799999999999999999999999876
No 99
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=27.57 E-value=27 Score=39.75 Aligned_cols=138 Identities=8% Similarity=-0.031 Sum_probs=82.0
Q ss_pred hHHHHHHHH-HHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeC-----------------------------CC
Q psy9573 497 YQSLFSIRH-QLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLN-----------------------------PI 544 (809)
Q Consensus 497 ~~~~~~lr~-~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~N-----------------------------Pi 544 (809)
+.+.+.+++ .+...||+|+.+-.|++.+....-+ +...++.+.+.. ++
T Consensus 235 ~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~ 314 (522)
T 2cja_A 235 RTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKI 314 (522)
T ss_dssp HHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHB
T ss_pred HHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccccccccc
Confidence 445666675 3677899999999999988765431 100123444531 12
Q ss_pred CccccccchhhHHHHHHHHHHHhcC-CCCCeeEEE-EeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCC
Q psy9573 545 SKKFNTMRSTLIGSLVNNICYNLKR-KLERIRLFE-IANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEEN 622 (809)
Q Consensus 545 s~e~s~lR~SLlpgLL~~l~~N~~~-~~~~i~lFE-iG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~ 622 (809)
..+.-+||++--+++....+.++.- ..-+++++. +|.+|+.....-.+ -.-.+|..+.-+..-+.. ++
T Consensus 315 ~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~G---L~R~REF~q~E~~~F~~p--e~----- 384 (522)
T 2cja_A 315 AEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHG---IERVDEFHRIEIVWIGTK--EE----- 384 (522)
T ss_dssp CCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCC---TTSCSEEEEEEEEEEEEH--HH-----
T ss_pred CCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCC---CeEeEEEEEeeEEEEeCh--HH-----
Confidence 2345689999888888777644331 222599999 99999865220000 012366666666555421 00
Q ss_pred CcCCHHHHH-HHHHHHHHhcCCe
Q psy9573 623 RNIDYFDLK-NDLENLFFPIKLN 644 (809)
Q Consensus 623 ~~~df~dlK-g~le~ll~~lgi~ 644 (809)
....+.++. ...+.++..||+.
T Consensus 385 s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 385 VLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 111245566 7778888999986
No 100
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=26.52 E-value=84 Score=26.32 Aligned_cols=71 Identities=8% Similarity=0.144 Sum_probs=45.3
Q ss_pred EEEEEcCCCCHHHHHHHH-HhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy9573 719 IVFIFNKNINLQDVMDTM-FFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALIN 797 (809)
Q Consensus 719 lS~vv~~~~~~~~i~~~i-~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt~~ev~~~~~~ii~ 797 (809)
--+.|+.+-.+-.+.+.+ ...+.+ .+.+|.+-- |. | .+-++|-..+|.+|..|...+-.+-+.
T Consensus 15 sevfvddsdrftafeeellaryadk-----girsvdvaa-ya--------k--gidivfvaadrkmtraefsaiasrsir 78 (115)
T 4hlb_A 15 SEVFVDDSDRFTAFEEELLARYADK-----GIRSVDVAA-YA--------K--GIDIVFVAADRKMTRAEFSAIASRSIR 78 (115)
T ss_dssp ------CTTTTHHHHHHHHHHHGGG-----TEEEEEEEE-CS--------S--CEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred ceEEecccchhhHHHHHHHHHHhhc-----CcceeeHHH-Hh--------c--CCcEEEEeccchhhHHHHHHHHHHHHH
Confidence 334555555555554433 344444 566654321 21 1 366888999999999999999999999
Q ss_pred HHHHhcCc
Q psy9573 798 SVCKNFNA 805 (809)
Q Consensus 798 ~L~~~~~a 805 (809)
.|+++||.
T Consensus 79 elkerfgf 86 (115)
T 4hlb_A 79 ELKERFGF 86 (115)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 99999975
No 101
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=24.91 E-value=72 Score=30.88 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=38.2
Q ss_pred ceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEE-EeCCCccCCCCcchhhhhhhhhhh
Q psy9573 408 RKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFL-VIPPAHRFDLEIEEDIIEEIIRIY 474 (809)
Q Consensus 408 ~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~-v~vP~~R~DI~~~~DliEEIaR~y 474 (809)
|..+.++......+ ++..+.|+++||+++..++.+. -.+|.|= .-....+++.|++.-.
T Consensus 60 P~~l~ls~~e~~~l-------~~~~~~l~~~Gf~~e~~g~~~~v~~vP~~l-~~~~~~~li~~ll~~l 119 (188)
T 1x9z_A 60 PLRLKVSAEEKSAL-------EKAQSALAELGIDFQSDAQHVTIRAVPLPL-RQQNLQILIPELIGYL 119 (188)
T ss_dssp EEEEECCHHHHHHH-------HHHHHHHHHTTCEEEECSSEEEEEEEEGGG-TTSCHHHHHHHHHHHH
T ss_pred CEEEEeCHHHHHHH-------HHHHHHHHhCCcEEEEcCCcEEEEecCchh-cccCHHHHHHHHHHHH
Confidence 45667776666544 4677899999999986554443 3577762 2234567777777543
No 102
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=24.04 E-value=99 Score=26.59 Aligned_cols=49 Identities=10% Similarity=0.001 Sum_probs=32.2
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEec-CCceEEEEeCCCcccCCCEEEEEe
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAI 93 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~-g~~~~~iv~ga~n~~~g~~v~~a~ 93 (809)
-|+|.|.+-.|||.=...++.-|.. ......|..-.-...+|++|.++.
T Consensus 5 kViG~VvsT~K~~~L~G~kLlvV~~~~~g~~~VAvD~vGAG~Ge~Vlv~~ 54 (91)
T 2rcf_A 5 QVEKTLVSTNRIADMGHKPLLVVWEKPGAPRQVAVDAIGCIPGDWVLCVG 54 (91)
T ss_dssp EEEEECCSEEECTTSCSSCEEEEESSTTSCCEEEEESSCCCTTCEEEEEE
T ss_pred EEEEEEEEeeecCCCCCcEEEEEEEcCCCCEEEEEECCCCCCCCEEEEeC
Confidence 4899999999999655444444442 222345555555567888888873
No 103
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=21.40 E-value=1.5e+02 Score=24.40 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=27.0
Q ss_pred EEEEEEEeeCCCCCceeEEEEecCCceEEEEeCC-CcccCCCEEEEEe
Q psy9573 47 IGKIINIIKHPDIDNFNICKVDTYKNILDIVCNI-PNIRVGLKVPCAI 93 (809)
Q Consensus 47 vg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga-~n~~~g~~v~~a~ 93 (809)
-|||+++.. ....||+++..++|-..- +.+++|++|.|-.
T Consensus 6 P~kVvei~~-------~~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~ 46 (75)
T 2z1c_A 6 PGKVIEVNG-------PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHT 46 (75)
T ss_dssp CEEEEEEET-------TEEEEEETTEEEEEECTTSTTCCTTCEEEEET
T ss_pred cEEEEEECC-------CEEEEEcCCEEEEEEEEEeCCCCCCCEEEEec
Confidence 488999921 347778887445554333 5689999998853
No 104
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=21.01 E-value=1.7e+02 Score=25.65 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=28.2
Q ss_pred EEEEEEEeeCCCCCceeEEEEecCCceEEEEeCC-C-cccCCCEEEEEe
Q psy9573 47 IGKIINIIKHPDIDNFNICKVDTYKNILDIVCNI-P-NIRVGLKVPCAI 93 (809)
Q Consensus 47 vg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga-~-n~~~g~~v~~a~ 93 (809)
-|||+++.. .+ ..+.||++...++|-..- + .+++|++|.|-.
T Consensus 27 P~kVveI~~---~~--~~A~Vd~~Gv~reV~l~Lv~e~~~vGDyVLVHv 70 (103)
T 3d3r_A 27 PSQVVAVDN---ER--QSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHI 70 (103)
T ss_dssp CEEEEEEET---TT--TEEEEEETTEEEEEECTTBSSCCCTTCEEEEEE
T ss_pred CEEEEEEeC---CC--CEEEEEcCCEEEEEEEEeecCCCCCCCEEEEee
Confidence 489999962 22 347778887445554443 3 588999999865
Done!