Query psy9573
Match_columns 809
No_of_seqs 280 out of 1625
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 23:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9573.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9573hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jjcb6 b.153.1.1 (B:191-399) 100.0 7.1E-60 5.2E-64 472.0 17.8 193 205-401 8-205 (209)
2 d1jjcb5 d.104.1.1 (B:475-681) 100.0 3.7E-42 2.7E-46 350.3 21.6 199 478-696 1-202 (207)
3 d1jjcb3 b.40.4.4 (B:39-151) Do 100.0 3.4E-35 2.4E-39 265.9 11.3 109 41-155 3-112 (113)
4 d1jjcb4 d.58.13.1 (B:682-785) 99.9 9.8E-27 7.2E-31 209.4 13.4 99 705-809 2-100 (104)
5 d1ntga_ b.40.4.4 (A:) C-termin 99.9 4.1E-28 3E-32 237.1 -0.8 134 44-188 10-147 (171)
6 d1fl0a_ b.40.4.4 (A:) EMAP II 99.9 1.5E-26 1.1E-30 224.7 -3.3 129 45-186 8-149 (164)
7 d1jjcb1 a.6.1.1 (B:1-38,B:152- 99.9 1.7E-23 1.2E-27 176.7 8.7 36 1-36 1-36 (77)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 99.9 1.4E-23 1E-27 176.9 6.1 73 408-480 2-74 (75)
9 d1mkha_ b.40.4.4 (A:) C-termin 99.9 4E-23 2.9E-27 186.0 5.0 94 45-151 13-106 (107)
10 d1pxfa_ b.40.4.4 (A:) Structur 99.8 1E-19 7.3E-24 164.6 5.4 94 45-151 14-109 (111)
11 d1pyba_ b.40.4.4 (A:) Structur 99.7 6.6E-19 4.8E-23 158.1 8.3 89 45-151 13-106 (107)
12 d1gd7a_ b.40.4.4 (A:) TRBP111 99.7 1.7E-17 1.3E-21 149.8 6.1 93 45-151 12-108 (109)
13 d1jjca_ d.104.1.1 (A:) Phenyl- 99.4 8.2E-13 6E-17 135.6 16.6 201 479-700 2-240 (266)
14 d1jjcb1 a.6.1.1 (B:1-38,B:152- 95.5 0.009 6.6E-07 48.6 5.7 67 412-479 2-72 (77)
15 d1z7ma1 d.104.1.1 (A:6-323) AT 95.0 0.045 3.3E-06 55.9 10.7 130 496-643 18-151 (318)
16 d1wu7a2 d.104.1.1 (A:3-329) Hi 94.8 0.062 4.5E-06 55.1 11.2 108 497-612 22-130 (327)
17 d1kmma2 d.104.1.1 (A:4-325) Hi 94.6 0.097 7.1E-06 53.4 12.2 132 497-643 20-154 (322)
18 d1h4vb2 d.104.1.1 (B:2-325) Hi 92.7 0.22 1.6E-05 50.8 10.8 132 496-643 19-155 (324)
19 d1c0aa3 d.104.1.1 (A:107-287,A 92.3 0.39 2.9E-05 49.5 12.2 112 498-640 37-148 (346)
20 d1nj8a3 d.104.1.1 (A:0-267) Pr 88.4 1.8 0.00013 42.6 12.6 140 496-645 38-186 (268)
21 d1qe0a2 d.104.1.1 (A:1-325) Hi 85.6 1.2 8.9E-05 44.8 9.7 131 497-643 20-156 (325)
22 d1b8aa2 d.104.1.1 (A:104-438) 82.3 2.1 0.00015 43.3 9.8 113 498-641 39-151 (335)
23 d1l0wa3 d.104.1.1 (A:105-294,A 81.1 6.3 0.00046 40.0 13.1 112 498-640 45-156 (356)
24 d1e1oa2 d.104.1.1 (A:161-502) 80.4 4.2 0.00031 41.1 11.4 113 498-641 28-140 (342)
25 d1nnha_ d.104.1.1 (A:) Hypothe 80.3 2.3 0.00017 42.4 9.0 119 498-640 19-138 (293)
26 d1eova2 d.104.1.1 (A:205-557) 80.0 3.4 0.00025 42.0 10.5 112 498-640 49-160 (353)
27 d1hc7a2 d.104.1.1 (A:5-276) Pr 69.2 2.9 0.00021 40.5 6.2 92 496-587 43-141 (272)
28 d1n9wa2 d.104.1.1 (A:111-414) 69.1 8.5 0.00062 38.0 9.9 112 498-641 20-131 (304)
29 d1jjcb2 a.6.1.1 (B:400-474) Do 68.2 1.5 0.00011 34.5 3.1 32 2-33 6-37 (75)
30 d1nj1a3 d.104.1.1 (A:19-283) P 65.2 4.7 0.00034 39.1 6.8 136 497-645 37-183 (265)
31 d1nyra4 d.104.1.1 (A:242-532) 64.0 3.2 0.00024 41.2 5.3 136 496-644 33-175 (291)
32 d2qw7a1 b.40.15.1 (A:1-96) Car 53.3 15 0.0011 30.1 6.6 53 45-98 5-63 (96)
33 d2hd3a1 b.40.15.1 (A:1-95) Eth 50.6 14 0.001 30.1 6.1 53 45-98 5-63 (95)
34 d1qf6a4 d.104.1.1 (A:242-532) 50.3 7.1 0.00052 38.5 5.1 134 496-644 33-173 (291)
35 d2rcfa1 b.40.15.1 (A:1-82) Car 49.9 11 0.00079 30.0 5.1 53 45-98 5-58 (82)
36 d1usya_ d.104.1.1 (A:) ATP pho 46.4 18 0.0013 34.9 7.4 111 503-643 12-122 (275)
37 d1seta2 d.104.1.1 (A:111-421) 41.6 25 0.0018 34.7 7.7 139 497-646 60-204 (311)
38 d3d3ra1 b.40.14.1 (A:1-76) Hyd 33.1 24 0.0018 27.4 4.6 42 47-93 6-49 (76)
39 d2z1ca1 b.40.14.1 (A:2-72) Hyd 32.5 60 0.0044 24.6 6.9 39 48-93 6-45 (71)
40 d1b76a2 d.104.1.1 (A:1-394) Gl 27.4 18 0.0013 36.1 3.7 89 498-586 44-159 (331)
41 d1bjna_ c.67.1.4 (A:) Phosphos 25.2 32 0.0023 33.2 5.2 62 719-804 298-360 (360)
42 d1ni5a3 b.153.1.2 (A:315-432) 23.6 59 0.0043 27.1 5.8 52 277-329 39-104 (118)
43 d2ot2a1 b.40.14.1 (A:1-90) Hyd 22.5 94 0.0069 24.6 6.6 41 46-93 5-52 (90)
44 d1g5ha2 d.104.1.1 (A:41-330) T 21.9 56 0.0041 31.6 6.2 88 548-643 112-202 (290)
No 1
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=7.1e-60 Score=472.04 Aligned_cols=193 Identities=27% Similarity=0.411 Sum_probs=185.5
Q ss_pred cceeEEecccccccceEEEEEecccCCCCCHHHHHHHHHHCCCCcccHhHHHHHHHHHHhCCCCCcccccccCCCEEEEE
Q psy9573 205 EILPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRW 284 (809)
Q Consensus 205 ~~~~v~i~~~~~cp~y~~~vi~~v~v~~~sp~~lq~rL~~~g~~~in~iVDitNyv~le~GqPlh~fD~dki~~~i~vr~ 284 (809)
..++|.+++++.||+|.+++|+||++ .+||.|||+||.++|+||+|++||||||||+|+|||+|+||+|||.+.|.||.
T Consensus 8 ~~~~i~ie~~~~C~~y~~~~I~~v~~-~~SP~wlk~rL~~~Gir~iN~iVDItNYVmle~GqPlH~fD~dki~~~i~vr~ 86 (209)
T d1jjcb6 8 LPFALKVEDPEGAPHFTLGYAFGLRV-APSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRR 86 (209)
T ss_dssp CSSEEEESCTTTCSEEEEEEEESCCC-CCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTCCEEEEEGGGTBTEEEEEE
T ss_pred CCeEEEeeCccCCCcEEEEEEECCcc-CCCHHHHHHHHHHcCCCccchhhhhHHHHHHHhccchhhhhhhccccceeeec
Confidence 45889999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEecCCeeeeecCCcEEEE----eCCceeEecccccCccceeecCCceEEEEEeecCchhHhhhccccCCCccc
Q psy9573 285 GNIGETIKISNDLIIKIDKNIGIIS----DNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTES 360 (809)
Q Consensus 285 a~~~e~~~~L~~~~~~l~~~~lvi~----D~~~~lslagi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~tda 360 (809)
++++|+|.+||+++++|+++++||+ |+++|+||||||||.+|+|+++|+|||||+|+|+|..||+|||+|||+|||
T Consensus 87 a~~~E~~~~Ld~~~~~L~~~~lvI~~~~~d~~~~ialAGimGg~~s~v~~~T~~I~lEsA~F~p~~Ir~tsr~l~l~Tda 166 (209)
T d1jjcb6 87 AREGERLKTLDGVERTLHPEDLVIAGWRGEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEA 166 (209)
T ss_dssp CCTTCEEEBTTSCEEECCTTCEEEEEEETTEEEEEEETTTEEBSTTCCCTTCCCEEEEEEECCHHHHHHHHHHTTCCCHH
T ss_pred cCCCCEEEecCccccccCCCceEEEeccccccccEEEeeeeccccccccccchhEEEEEeecCHHHHHHHHHhhCcchhh
Confidence 9999999999999999999999999 678999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCHHhHHHHHHHHHHHHHHHhCCcccccc-ceEee
Q psy9573 361 SYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKIS-QIDDQ 401 (809)
Q Consensus 361 s~RfergvD~~~~~~al~~~~~ll~~~~gg~~~~~~-~~~~~ 401 (809)
|||||||+||+.+..|++||++||.++|||+ ++ .+.+.
T Consensus 167 S~RfErGvDp~~~~~al~ra~~Li~e~~gg~---~~~~~~~~ 205 (209)
T d1jjcb6 167 SHRFERGVDPLGQVPAQRRALSLLQALAGAR---VAEALLEA 205 (209)
T ss_dssp HHHHHHCCCTTCHHHHHHHHHHHHHHHHCCE---EESCCEEE
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHhCCE---EccceEec
Confidence 9999999999999999999999999999998 54 45443
No 2
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=3.7e-42 Score=350.25 Aligned_cols=199 Identities=28% Similarity=0.477 Sum_probs=175.4
Q ss_pred CCCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHH
Q psy9573 478 NIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIG 557 (809)
Q Consensus 478 nip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlp 557 (809)
.||+.+|..... .....+++.+++|+.|+++||+|++||||+|++.++.+... ...|+|.||+|+|+++||+||+|
T Consensus 1 ~iP~~lP~~~~~--~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~--~~~i~l~NPis~e~~~lR~sLlp 76 (207)
T d1jjcb5 1 ALPAFFPAPDNR--GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLD--PPRLLLLNPLAPEKAALRTHLFP 76 (207)
T ss_dssp CCCCCCCCGGGT--TTTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCC--CCSCEESSCSSGGGSEECSCSHH
T ss_pred CCCCCCCCCCCC--CCChhHHHHHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCC--CCcEEEeCCcchhhhhhhhhcch
Confidence 378888754322 34456778999999999999999999999999998888765 56799999999999999999999
Q ss_pred HHHHHHHHHhcCCCCC-eeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHH
Q psy9573 558 SLVNNICYNLKRKLER-IRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLEN 636 (809)
Q Consensus 558 gLL~~l~~N~~~~~~~-i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ 636 (809)
|||+++++|++|+.++ +++||+|+||.. .+..+++++++|.....+|... ..+|||++||+|++
T Consensus 77 gLL~~~~~N~~r~~~~~~~lFEiG~vf~~--------------~~~~~~~~~~~g~~~~~~~~~~-~~~df~~~Kg~v~~ 141 (207)
T d1jjcb5 77 GLVRVLKENLDLDRPERALLFEVGRVFRE--------------REETHLAGLLFGEGVGLPWAKE-RLSGYFLLKGYLEA 141 (207)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEEEEEEESS--------------SEEEEEEEEEEESCBSCTTSSC-CBCHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccccceeeEeeeeeeec--------------cccccchhhhhhcccccccccc-cchhHHHHHHHHHH
Confidence 9999999999998776 799999999953 2457789999998888889754 57899999999999
Q ss_pred HHHhcCCee--eeccCCCCcCccEEEEEECCEEEEEEEeecHHHHHhCCCCCceEEEEeehH
Q psy9573 637 LFFPIKLNF--LKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDAL 696 (809)
Q Consensus 637 ll~~lgi~~--~~~~~~~~hPgrsA~I~~~g~~iG~iGelhP~vl~~~~i~~~v~~~El~l~ 696 (809)
++..+|+.+ .+.++++|||||+|.|+++|+.||++|+|||+++++|+|+ |||+|||||+
T Consensus 142 ll~~lg~~~~~~~~~~~~~hpg~~a~I~~~~~~iG~~G~l~p~i~~~~~i~-~v~~~Ei~l~ 202 (207)
T d1jjcb5 142 LFARLGLAFRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELRLP 202 (207)
T ss_dssp HHHHHTCCEEEEECCCTTEEEEEEEEEEESSSEEEEEEEECHHHHHHTTCC-CCEEEEEEES
T ss_pred HHHhhhcccccccccCCccCCCeEEEEEECCeEEEEEEEECHHHHHHcCCC-ceEEEEEeCC
Confidence 999999854 5567899999999999999999999999999999999998 8999999985
No 3
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=3.4e-35 Score=265.89 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=102.5
Q ss_pred CCCCeEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceecc
Q psy9573 41 IFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSY 120 (809)
Q Consensus 41 ~~~~vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~ 120 (809)
..++++||+|++++|||| |||++|+||+| +.+||||||+|+++|++|+||++||+||+. |++|++++|||++|+
T Consensus 3 ~~~gvvvg~I~~~~~hP~-~kL~~~~Vd~g-~~~~IV~ga~Nv~~g~~v~vA~~Ga~lp~~----g~~I~~~kirGv~S~ 76 (113)
T d1jjcb3 3 IPRGVVFARVLEAHPIPG-TRLKRLVLDAG-RTVEVVSGAENARKGIGVALALPGTELPGL----GQKVGERVIQGVRSF 76 (113)
T ss_dssp CCTTEEEEEEEEEEECTT-SSCEEEEEESS-SEEEEEECCTTCCTTCEEEEECTTCCCTTC----SSCCCEEEETTEEEE
T ss_pred CCCCEEEEEEEEeEeCCC-CcEEEEEECCC-CEEEEEeCCchhhcCcEEEEEecccccCcc----cceeccceecCEeee
Confidence 357999999999999996 79999999998 568999999999999999999999999963 789999999999999
Q ss_pred CcccCccccCCCCCCCceEEcCCC-CCCCCchhhhc
Q psy9573 121 GLLCSEYDLKINNKNKYLFELPED-APIGKNFYDYY 155 (809)
Q Consensus 121 GMlcs~~eLGl~~~~~GI~~l~~~-~~~G~~~~~~~ 155 (809)
|||||++||||+++++||++||++ +++|+++.+++
T Consensus 77 GMlcS~~ELGl~~~~~GI~~L~~d~~~~G~~~~e~~ 112 (113)
T d1jjcb3 77 GMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAW 112 (113)
T ss_dssp SEECCHHHHTSCSCCSSCCCBCTTSSCTTCBGGGGS
T ss_pred eEEecHHHcCCCCCCCcEEEeCCCCCCCCCchHHhC
Confidence 999999999999999999999988 49999999986
No 4
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]}
Probab=99.94 E-value=9.8e-27 Score=209.42 Aligned_cols=99 Identities=23% Similarity=0.410 Sum_probs=96.2
Q ss_pred ccccCCCCCCceeeEEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEEEEEEEEeCCCCCCC
Q psy9573 705 NYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLK 784 (809)
Q Consensus 705 ~~~~~skfP~~~RDlS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl~~rl~~~~~~rTLt 784 (809)
.|+|+|+||++.|||||++|++++++++.+.|++.+++ ++++|++||+|+|+++++|+||+|||++||+.+||||
T Consensus 2 ~y~~~S~fP~v~RDiS~~v~~~~~~~~i~~~i~~~~~~-----~l~~v~lfDvy~g~~~~~gkkS~~~r~~~q~~~kTLt 76 (104)
T d1jjcb4 2 AFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAAGP-----YLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRTLR 76 (104)
T ss_dssp CCCCCCCSCCEEEEECCEEESSSCHHHHHHHHHHHHCT-----TEEEEEEEEEECSTTSCTTEEEEEEEEEECCSSSCCC
T ss_pred eeccCCCCCCcceeEEEEECCCCCHHHHHHHHHHhccc-----ccccceEEeEEcCCCCCCCcEEEEEEEEEeCCCCCCC
Confidence 69999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccCC
Q psy9573 785 NNIINNAINALINSVCKNFNAKLRN 809 (809)
Q Consensus 785 ~~ev~~~~~~ii~~L~~~~~a~lR~ 809 (809)
|+||+++|++|++.|+++ ||+||+
T Consensus 77 d~eV~~~~~~i~~~l~~~-~a~lRG 100 (104)
T d1jjcb4 77 DEEVEEAVSRVAEALRAR-GFGLRG 100 (104)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCBCSC
T ss_pred HHHHHHHHHHHHHHHHHc-CCEeCC
Confidence 999999999999999765 999995
No 5
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=4.1e-28 Score=237.11 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=119.6
Q ss_pred CeEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 44 KIIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 44 ~vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
.++||+|+++++||+||||++|+||+|+ +.+|||||++|+.+++. ++|+.++. +++||++||||+.|+||
T Consensus 10 di~VG~I~~v~~hP~adkL~v~~Vd~G~~~~~~Iv~g~~~~~~~~~----~~g~~v~~-----~~nlk~~kirGv~SeGM 80 (171)
T d1ntga_ 10 DIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEE----LQDRLVVV-----LCNLKPQKMRGVESQGM 80 (171)
T ss_dssp CEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGG----TTTCEEEE-----ECCBCCEEETTEEECCE
T ss_pred cEEEEEEEEEEECCCCCeeEEEEEEeCCCceEEEEeecccccccch----hcccccce-----eeeccccccCccccceE
Confidence 3899999999999999999999999997 88999999999998765 45778876 68999999999999999
Q ss_pred ccCccccCCCCCCCceEEcCCCCCCCCchhhhcccCceeEEeecCCCc---ccccChHHHHHHHHHhcC
Q psy9573 123 LCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNR---GDCLSLLGIAREISILSN 188 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI~~l~~~~~~G~~~~~~~~l~D~ileieitpNR---~D~ls~~GiARelaa~~~ 188 (809)
|||++|+|+++++. ++.+|+++++|+.+. +-+++|...+..++||| .||++++|+||+..|.|+
T Consensus 81 l~s~~e~g~~~~~~-~~~~p~~~~~G~~v~-~~~~~~~~~~~~~~~k~k~~~~~~~~l~v~~d~~a~~k 147 (171)
T d1ntga_ 81 LLCASIEGINRQVE-PLDPPAGSAPGEHVF-VKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWK 147 (171)
T ss_dssp ECEEEEESSSEEEE-ECBCCBTCCTTCEEE-ETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEET
T ss_pred EeecccCCCcccee-eecCCCCCCCcCEEE-ECCccccCcccccCcccchHHHhcccccCCCCCEEEEC
Confidence 99999999987664 678899999999983 44678888999999999 599999999999888875
No 6
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.90 E-value=1.5e-26 Score=224.71 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=109.0
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
++||+|+++++||+||||++|+||+|+ +.+|||||++|+.. +.+++|+.++. .++||++||||++|+|||
T Consensus 8 irVGkI~~~~~hP~adkL~v~~VD~G~~~~~~Iv~g~~~~~~----~~~l~g~~v~~-----~~nlkp~kirGv~SeGMl 78 (164)
T d1fl0a_ 8 LRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVP----LEQMQNRMVIL-----LCNLKPAKMRGVLSQAMV 78 (164)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSC----GGGGTTEEEEE-----ECCSCCEESSSCEECCEE
T ss_pred EEEEEEEEEEECCCCCcceEEEEEccCCceEEEEeecccccc----chhccCccccc-----cccccccccCceEcceEE
Confidence 899999999999999999999999997 88999999999764 55678888887 789999999999999999
Q ss_pred cCccccCCCCCCCceEEcCCCCCCCCchh--hhccc-------Ccee---EEeecCCCcccccChHHHHHHHHHh
Q psy9573 124 CSEYDLKINNKNKYLFELPEDAPIGKNFY--DYYKF-------NNLK---FVIKLTPNRGDCLSLLGIAREISIL 186 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l~~~~~~G~~~~--~~~~l-------~D~i---leieitpNR~D~ls~~GiARelaa~ 186 (809)
||+++ +++.+++.+|+++++|+.+. .+.+. .+.+ +..++||||.||+++.|+||++++.
T Consensus 79 lsa~~----~~~~~ll~~p~~~~~G~~v~~~~~~~~~~~~l~~k~~~~~~i~~~l~~n~~~~~~~~g~~~~~~~~ 149 (164)
T d1fl0a_ 79 MCASS----PEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGK 149 (164)
T ss_dssp CEEEE----TTEEEECBCCTTCCTTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTT
T ss_pred EeeeC----CCccEEEeCCCCCCCCCEEEecccCCCCchhcCcccchhHhhccCcEECCCCEEEECCEEeeeccC
Confidence 99986 44678999999999998764 22222 2222 3367999999999999999988653
No 7
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=99.88 E-value=1.7e-23 Score=176.69 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=34.8
Q ss_pred CccCHHHHhhccCCCCCHHHHHHHHHhcCceeeeEE
Q psy9573 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIE 36 (809)
Q Consensus 1 M~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe~v~ 36 (809)
||||++||++||+.+.|+++|+++||++|+|||+++
T Consensus 1 Mkis~~WLke~v~~~~s~~eLae~LT~~G~EVE~i~ 36 (77)
T d1jjcb1 1 MRVPFSWLKAYVPELESPEVLEERLAGLGFETDRIE 36 (77)
T ss_dssp CEEEHHHHTTTSTTCCCHHHHHHHHHHHTCCEEEEE
T ss_pred CccCHHHHHHHcCCCCCHHHHHHHHhhccccccccc
Confidence 999999999999999999999999999999999875
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=99.88 E-value=1.4e-23 Score=176.93 Aligned_cols=73 Identities=37% Similarity=0.640 Sum_probs=70.2
Q ss_pred ceEEEeehhhhhcccCcccCHHHHHHHHHhcCCEEEEeCCEEEEeCCCccCCCCcchhhhhhhhhhhccCCCC
Q psy9573 408 RKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIP 480 (809)
Q Consensus 408 ~~~I~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGydnip 480 (809)
+++|.++.++++++||++++.+++.++|++|||+++.+++.|.|++|+||+||++++||||||||+|||||||
T Consensus 2 P~~I~l~~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~~~~~~~~V~vPs~R~Di~~~~DliEEi~R~~Gyd~IP 74 (75)
T d1jjcb2 2 PEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQGYETIP 74 (75)
T ss_dssp CCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEECSSSSEEEECCTTCTTCCSHHHHHHHHHHHHCGGGSC
T ss_pred CeEEEECHHHHHHHhCCCCCHHHHHHHHHHcCCceEecCCcEEEecchhccccCCcchHHHHHHHHhCccCCC
Confidence 3689999999999999999999999999999999987778899999999999999999999999999999998
No 9
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=99.86 E-value=4e-23 Score=186.01 Aligned_cols=94 Identities=20% Similarity=0.321 Sum_probs=81.0
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCccc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLLC 124 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMlc 124 (809)
++||+|+++++||+||||++|+||+|++.+||||||+|+..+ -+++|+.++. ..+|++++|||++|+||+|
T Consensus 13 irVG~I~~~~~hp~adkL~~~~Vd~G~~~~~Iv~G~~~~~~~----e~liG~~v~~-----v~nlk~~kirGv~SeGMl~ 83 (107)
T d1mkha_ 13 LRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKP----EELLNRYVVV-----VANLEPKKLRGIGSQGMLL 83 (107)
T ss_dssp EEEEEEEEEEECTTCSSCEEEEEECSSCEEEEEECCTTTCCH----HHHTTCEEEE-----ETTSCCEEC-CCEECCCBC
T ss_pred EEEEEEEEEEecCCCCceEEEEEEcCCeEEEEEEEeeeEEcC----cccCCCEEEe-----ecCCCcccCCCccCCEEEE
Confidence 899999999999999999999999999889999999999753 3456777775 5789999999999999999
Q ss_pred CccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 125 SEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 125 s~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
|++| +++.+++.+|+++++|+++
T Consensus 84 s~~e----~~~~~ll~~~~~~~~G~~i 106 (107)
T d1mkha_ 84 AADD----GERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp EEEC----SSCEEECCCSSCCCTTCEE
T ss_pred Eeec----CCcEEEEECCCCCCCCCcc
Confidence 9886 4556677778889999875
No 10
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=1e-19 Score=164.56 Aligned_cols=94 Identities=19% Similarity=0.327 Sum_probs=73.4
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeC-CCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCcc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCN-IPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGLL 123 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~g-a~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GMl 123 (809)
++||+|+++++||+||||++|+||+|++.+||||| ++|+.++ +++|..++. ..++|++||||+.|+||+
T Consensus 14 irVG~I~~~e~hp~adkL~~~~VD~G~~~~~iv~g~~~~~~~e-----~lvGk~v~~-----v~Nlkp~kirGv~SeGMi 83 (111)
T d1pxfa_ 14 MRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEE-----ELMGKTVVV-----LCNLQKAKMRGETSECML 83 (111)
T ss_dssp EEEEEEEEEECCTTCTTCCEEEEEETTEEEEEECCCCTTSHHH-----HHTTCEEEE-----ETTCSCCCBTTBCCCCCB
T ss_pred EEEEEEEEEEEcCCCCceEEEEEEeCCcceeEEEEcccccChh-----HhcCceeee-----ecccccceECCeeceEEE
Confidence 89999999999999999999999999988999999 5555532 234555554 578999999999999999
Q ss_pred cCccccCCCCCCCceEEcC-CCCCCCCch
Q psy9573 124 CSEYDLKINNKNKYLFELP-EDAPIGKNF 151 (809)
Q Consensus 124 cs~~eLGl~~~~~GI~~l~-~~~~~G~~~ 151 (809)
|++.+ ++.++.++..| .++++|+.+
T Consensus 84 l~~~~---~d~~~~~ll~p~~~~~~G~rv 109 (111)
T d1pxfa_ 84 LCAET---DDGSESVLLTPERMMPAGVRV 109 (111)
T ss_dssp CEEEC---TTSCCEEECCCSSCCCTTCBC
T ss_pred EEeEc---CCCCcEEEEcCCCCCCCCCEe
Confidence 98764 22234444444 468999875
No 11
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Probab=99.75 E-value=6.6e-19 Score=158.10 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=74.0
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCCceEEEEeCCCcc-c----CCCEEEEEecCceecCcccCCceEEeeceecceec
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNI-R----VGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS 119 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga~n~-~----~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S 119 (809)
++||+|+++++||+||||++|+||+|++.+|||||+.+. . .|.+|++. .++|++||||++|
T Consensus 13 irVG~I~~~e~hp~adkL~~~~VD~G~~~~~iv~g~~~~~~~e~liGk~v~~v--------------~Nlkp~kirG~~S 78 (107)
T d1pyba_ 13 LRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKKIVIV--------------ANLKPRKIFGIES 78 (107)
T ss_dssp EEEEEEEEEECCSSCSCCEEEEEEETTEEEEEEECCTTTSCHHHHTTCEEEEE--------------TTSCSSCTTSCCB
T ss_pred EEEEEEEEEEeccccCceEEEEeecCCcccceEEeeecccChhHhcCcEEEEE--------------eccccceECCeee
Confidence 899999999999999999999999999779999987554 3 58888765 3589999999999
Q ss_pred cCcccCccccCCCCCCCceEEcCCCCCCCCch
Q psy9573 120 YGLLCSEYDLKINNKNKYLFELPEDAPIGKNF 151 (809)
Q Consensus 120 ~GMlcs~~eLGl~~~~~GI~~l~~~~~~G~~~ 151 (809)
+||+|++.+ +++-.++..|+++++|+.+
T Consensus 79 egMil~~~d----~~~~~ll~p~~~~~~G~~i 106 (107)
T d1pyba_ 79 QGMILAASD----GENLSVIVPDRDVKEGAKL 106 (107)
T ss_dssp SSEECEEEC----SSCEEEEEESSCCCTTEEC
T ss_pred eEEEEEEEc----CCceEEEeCCCCCCCCCcc
Confidence 999988764 3344456666789999875
No 12
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}
Probab=99.67 E-value=1.7e-17 Score=149.82 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=75.8
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCC--ceEEEEeCCCcccCCCEEEEEecCceecCcccCCceEEeeceecceeccCc
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYK--NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKSYGL 122 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~--~~~~iv~ga~n~~~g~~v~~a~~Ga~lp~~~~~~~~~i~~~~~rG~~S~GM 122 (809)
++||+|+++++||+||||.+|++++++ +.++|+||+.+.. .+.+++|+.++. ..++|++|+||++|+||
T Consensus 12 irVG~I~s~e~hp~adkll~~~v~~~g~~~~~~i~~~~~~~~----~~e~lvG~~v~~-----~~Nlkp~kirGv~SeGM 82 (109)
T d1gd7a_ 12 LRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELY----RPEDLVGRLVVC-----AVNLGAKRVAGFLSEVL 82 (109)
T ss_dssp EEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTC----CHHHHTTCEEEE-----ECSSCCEEETTEEECSE
T ss_pred EEEEEEEEEEEccCcccccEEEEEecCcccceEEeecccccc----ChhhhcCCcccc-----ccccCcceEccccCCEE
Confidence 899999999999999998888777664 6788888887654 455778888887 68999999999999999
Q ss_pred ccCccccCCCCCCCceEEc--CCCCCCCCch
Q psy9573 123 LCSEYDLKINNKNKYLFEL--PEDAPIGKNF 151 (809)
Q Consensus 123 lcs~~eLGl~~~~~GI~~l--~~~~~~G~~~ 151 (809)
+|++.+ +++++..| ++++++|+.+
T Consensus 83 iL~~~~-----~~~~~~ll~p~~~~~~G~ri 108 (109)
T d1gd7a_ 83 VLGVPD-----EAGRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp ECEEEC-----TTSCEEEEEESSCCCTTCBC
T ss_pred EEEEEc-----CCCcEEEEeCCCCCCCCCcc
Confidence 988764 44555444 7889999865
No 13
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=99.43 E-value=8.2e-13 Score=135.56 Aligned_cols=201 Identities=14% Similarity=0.129 Sum_probs=152.3
Q ss_pred CCCCCCCccccCCCCCcchHHHHHHHHHHHhCCceEeeeccccChHHH-hhhc-CCC-----CCCcEEeeC-------CC
Q psy9573 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE-KDFS-QNI-----NNYPIELLN-------PI 544 (809)
Q Consensus 479 ip~~~p~~~~~~~~~~~~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~-~~~~-~~~-----~~~~i~L~N-------Pi 544 (809)
|..++|......+...+...+.+++++++.++||.|+-+---.+.... +.++ |.+ ..+..-|.+ |.
T Consensus 2 iDvtlPg~~~~~G~~HPl~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~ 81 (266)
T d1jjca_ 2 VDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPL 81 (266)
T ss_dssp CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTT
T ss_pred cceeCCCCCCCCCCCChHHHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcc
Confidence 455667666666777888889999999999999999977444433322 2222 220 123344443 33
Q ss_pred Ccc---ccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCC
Q psy9573 545 SKK---FNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEE 621 (809)
Q Consensus 545 s~e---~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~ 621 (809)
+++ ..+|||+..+...+.+..+ .+++++|-+|+||++++.+ .++..+..++-+++.+
T Consensus 82 ~~~~~~~~lLRTHTS~~q~r~~~~~----~~p~~~~~~g~VyRrd~iD------~tH~p~FhQ~eg~~vd---------- 141 (266)
T d1jjca_ 82 GEEVEGRLLLRTHTSPMQVRYMVAH----TPPFRIVVPGRVFRFEQTD------ATHEAVFHQLEGLVVG---------- 141 (266)
T ss_dssp SCEECSCEEECSSSTHHHHHHHHHS----CSSEEEEEEEEEECCSCCC------SSCCSEEEEEEEEEEE----------
T ss_pred cccchhhhhhccCCcHHHHHHHhcc----CCCceEEecccceecCCCC------Ccccccceeeeeeecc----------
Confidence 332 3599999999988887654 3579999999999988654 4678899999999987
Q ss_pred CCcCCHHHHHHHHHHHHHhcC-----CeeeeccCCCCcCccEEEEEE--CCE--EEEEEEeecHHHHHhCCCC-------
Q psy9573 622 NRNIDYFDLKNDLENLFFPIK-----LNFLKINNSILHPNRSALIFK--KTK--NIGFIGEIHPILQQKYDLP------- 685 (809)
Q Consensus 622 ~~~~df~dlKg~le~ll~~lg-----i~~~~~~~~~~hPgrsA~I~~--~g~--~iG~iGelhP~vl~~~~i~------- 685 (809)
..++|-++|+.++.+++.++ +.|.++..|+.+|+...+|+. +++ +||-+|.+||+|+++.|++
T Consensus 142 -~~~~~~~Lk~~l~~~~~~~f~~~~~~R~~p~yFPFTePS~Ev~v~~~~~~~WlEilG~Gmv~p~vL~~~gi~~~~~g~~ 220 (266)
T d1jjca_ 142 -EGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLP 220 (266)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHCTTCCEEEEECCCTTEEEEEEEEEEEGGGTEEEEEEEEEEECHHHHHHHHHHHHTTTCC
T ss_pred -ccccHHHHHHHHHHHHHHhcCCCcEEEEecccCCCccCCcceEEEEeecCCcceEEeecccCHHHHHhcCCchhhccCC
Confidence 46899999999999999874 357788899999988888887 454 6899999999999987543
Q ss_pred -----CceEEEEeehHHHhc
Q psy9573 686 -----LAPIFFEVDALELQK 700 (809)
Q Consensus 686 -----~~v~~~El~l~~L~~ 700 (809)
...++|.+.+|+|..
T Consensus 221 ~~~~~~~g~AfGlGlERlAM 240 (266)
T d1jjca_ 221 PAYRGVTGFAFGLGVERLAM 240 (266)
T ss_dssp CCCTTCEEEEEEEEHHHHHH
T ss_pred ccccCCeEEEEeecHHHHHH
Confidence 358999999999974
No 14
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=95.50 E-value=0.009 Score=48.56 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=58.6
Q ss_pred EeehhhhhcccCcccCHHHHHHHHHhcCCEEEE----eCCEEEEeCCCccCCCCcchhhhhhhhhhhccCCC
Q psy9573 412 KVRSERVIKILGIKLTNQEISNIFIRLKFHFIQ----KNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENI 479 (809)
Q Consensus 412 ~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~----~~~~~~v~vP~~R~DI~~~~DliEEIaR~yGydni 479 (809)
+++++.+++++..+++.+++.+.|+.+||+|+. ++..+.+.+=+.|.|...-.-++.|++-+ |.-.+
T Consensus 2 kis~~WLke~v~~~~s~~eLae~LT~~G~EVE~i~~~~d~iidieitPNR~Dcls~~Giarel~~~-~~~~~ 72 (77)
T d1jjcb1 2 RVPFSWLKAYVPELESPEVLEERLAGLGFETDRIERVEEVVLDLEVTPNRPDALGLLGLARDLHAL-GYALV 72 (77)
T ss_dssp EEEHHHHTTTSTTCCCHHHHHHHHHHHTCCEEEEEECCCEEEEECCCTTCSGGGSHHHHHHHHHHH-TCCCC
T ss_pred ccCHHHHHHHcCCCCCHHHHHHHHhhcccccccccccccceeeeeecCCcHHHhccccHHHHHHHh-ccccc
Confidence 678999999999999999999999999999963 23468999999999999999999999987 44444
No 15
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=94.97 E-value=0.045 Score=55.91 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhcC-C---CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ-N---INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL 571 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~-~---~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~ 571 (809)
.+.+.+++++.+...||+|+.|-.|-..+.+..... . ..+..+++..+ +.+.=+||+-+.+++.+.++.|. ..
T Consensus 18 ~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~--~~ 94 (318)
T d1z7ma1 18 LRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQIK--DS 94 (318)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTCC--SC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecC-CccEEEeeccccchHHHHHHHhc--cc
Confidence 445678999999999999999988877665443321 1 11356788887 77888999999999999887653 33
Q ss_pred CCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 572 ERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 572 ~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.+.|+|.+|+||+..... ...++|..++++=+.|.. ....-.++-.++-.+++.+|+
T Consensus 95 ~~~r~~Y~g~vfR~~~~~------~~r~rE~~Q~g~EiiG~~---------~~~ad~Eii~l~~e~l~~lgi 151 (318)
T d1z7ma1 95 TSARYSYFGKIFRKEKRH------KGRSTENYQIGIELFGES---------ADKSELEILSLALQVIEQLGL 151 (318)
T ss_dssp CCEEEEEEEECCCCCC-------------CCEEEEEEEESSC---------HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcccccccceeEEcccc------ccccchhhhhheeccccc---------hhhHHHHHHHHHHHHHHHhhh
Confidence 468999999999865432 124679999999888841 111223455566667777775
No 16
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=94.76 E-value=0.062 Score=55.15 Aligned_cols=108 Identities=9% Similarity=0.058 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCee
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~ 575 (809)
..+.+.+++.+...||+|+.|-.|-..+.+..- +....+..+++..| +...-+||+-+.|+....++.|.+.. .+.|
T Consensus 22 ~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~-~g~~l~LRpD~T~~iar~~~~~~~~~-~p~k 99 (327)
T d1wu7a2 22 KFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQ-RPLR 99 (327)
T ss_dssp HHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTCC-SSEE
T ss_pred HHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcc-cchhhcccccccchhhhHhhhhhhcc-ccce
Confidence 345677888889999999999888766543322 21112456788899 67777899999999999888875443 4699
Q ss_pred EEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCC
Q psy9573 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGP 612 (809)
Q Consensus 576 lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~ 612 (809)
+|-+|.||+..... ....+|...+++=+.|.
T Consensus 100 ~~y~g~VfR~~~~~------~g~~re~~Q~G~EiiG~ 130 (327)
T d1wu7a2 100 WYSFPKVWRYEEPQ------AGRYREHYQFNADIFGS 130 (327)
T ss_dssp EEECCEEECCCCSC------SSCCSEEEEEEEEEESC
T ss_pred eeccCcceeccccc------cCCcchhhhhhhhhcCC
Confidence 99999999865432 12457889999988884
No 17
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=94.62 E-value=0.097 Score=53.40 Aligned_cols=132 Identities=13% Similarity=0.072 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCCC--CCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQNI--NNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLER 573 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~~--~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~ 573 (809)
+.+.+.+++.+...||+|+.|-.|-..+.+... +... ..+.+....+.+.+.-+||+-+.+++.+.++.+......+
T Consensus 20 ~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~iaR~~~~~~~~~~~p 99 (322)
T d1kmma2 20 QRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE 99 (322)
T ss_dssp HHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHTTCSTTCC
T ss_pred HHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccchhhHHHHhhhhhhhhh
Confidence 345677888889999999999988776654332 2110 0123344556677888999999999999998877666677
Q ss_pred eeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 574 IRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 574 i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
.|++-+|.||+..... ....+|...+++=+-|... ...|. ++-.++-..+..+|+
T Consensus 100 ~r~~y~g~v~r~~~~~------~gr~re~~Q~g~EiiG~~~--------~~ad~-Eii~l~~~~l~~lgl 154 (322)
T d1kmma2 100 QRLWYIGPMFRHERPQ------KGRYRQFHQLGCEVFGLQG--------PDIDA-ELIMLTARWWRALGI 154 (322)
T ss_dssp EEEEEEEEEECCCCCB------TTBCSEEEEEEEEEESCCS--------HHHHH-HHHHHHHHHHHHHTC
T ss_pred hhHhhcccccccCCCC------CCccchhhhhhHHHhcccc--------chhHH-HHHHHHHHHHHhcCC
Confidence 9999999999865432 2346789999998888421 12233 445555556677775
No 18
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=92.74 E-value=0.22 Score=50.78 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCC---CCCCcEEeeCCCCccccccchhhHHHHHHHHHHH-hcCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQN---INNYPIELLNPISKKFNTMRSTLIGSLVNNICYN-LKRK 570 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~---~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N-~~~~ 570 (809)
.+++.+.+++.+...||+|+.|-.|-..+.+... +.. ..+..+.+..+ +.+.-+||+-+.+++...++.| .+..
T Consensus 19 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iar~~~~~~~~~~ 97 (324)
T d1h4vb2 19 HQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMKVW 97 (324)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECT-TSCEEEECCCSHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhcc-CCcccccccccccHHHHHHHHhhhhhh
Confidence 3456778888889999999999888665543322 111 01223445444 6677889999999999977655 3433
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
..+.|+|=+|.||+..... ....+|..++++-+.|... ... =-++-.++...+..+|+
T Consensus 98 ~~p~r~~Y~g~VfR~~~~~------~gr~re~~Q~g~EiiG~~~--------~~a-d~Eii~l~~~~l~~l~~ 155 (324)
T d1h4vb2 98 PQPVRLWMAGPMFRAERPQ------KGRYRQFHQVNYEALGSEN--------PIL-DAEAVVLLYECLKELGL 155 (324)
T ss_dssp SSSEEEEEEEEEECCCCC----------CCEEEEEEEEEESCCC--------HHH-HHHHHHHHHHHHHHTTC
T ss_pred chhhhheeeCcccccCccc------CCCcceeccccccccCCCC--------hHH-HHHHHHHHHHHHHHhcc
Confidence 4579999999999865432 1245788899998888421 111 22344555556666664
No 19
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=92.30 E-value=0.39 Score=49.48 Aligned_cols=112 Identities=9% Similarity=0.056 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|++|...||.||-|-.++.... .. ........+....+.-.||+|-=-- ++.+ +.-+. -++|
T Consensus 37 ~i~~~iR~ff~~~gFlEV~TPiL~~~~~-----~g-~~~~~~~~~~~~~~~~~L~~Spel~-lk~l---l~~g~--~~Vf 104 (346)
T d1c0aa3 37 KITSLVRRFMDDHGFLDIETPMLTKATP-----EG-ARDYLVPSRVHKGKFYALPQSPQLF-KQLL---MMSGF--DRYY 104 (346)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCS-----SS-SCCCEEECSSSTTCEEECCSCSHHH-HHHH---HHTTC--CEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCccCCCCC-----cc-ccccccccccCCCccccCCcCHHHH-HHHH---hhcCC--CceE
Confidence 4678899999999999999999875421 11 0223344455555556799984322 2222 12233 5899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
|||++|+..+.+ ..+-.|.++|-.=.++ .|+.++...+|.+++.
T Consensus 105 ~i~~~FR~E~~~------~~H~~EFtmLE~e~a~-------------~~~~~~m~~~E~li~~ 148 (346)
T d1c0aa3 105 QIVKCFRDEDLR------ADRQPEFTQIDVETSF-------------MTAPQVREVMEALVRH 148 (346)
T ss_dssp EEEEEECCCCCB------TTBCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHH
T ss_pred EEeeeccccccC------chhhhHhhhhcccccc-------------ccHhHhHHHHHHHHHH
Confidence 999999866543 2344688888755544 4788888888887765
No 20
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=88.35 E-value=1.8 Score=42.55 Aligned_cols=140 Identities=12% Similarity=0.037 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCC-CCCcEEeeC---CCCccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNI-NNYPIELLN---PISKKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~-~~~~i~L~N---Pis~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+++.+.+++.+...||+||.|-.+.+++...+-. ... ......+.. ....+.=+||++--|+.....+...+
T Consensus 38 ~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~~~S 117 (268)
T d1nj8a3 38 RRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKV 117 (268)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhhhccc
Confidence 45678888899999999999999999988754321 000 012222222 12233458999999998888876544
Q ss_pred CCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeE--EeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 569 RKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKK--IAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~--l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
.+.-++++||+|.+|+.......+- ...+|... -+..++... ......+..+....+.++..+|+.+
T Consensus 118 yr~LP~r~~e~~~~fR~E~~~~~Gl---lR~reF~~~dd~~~~~~~~-------~~~~~~~~~~~~~y~~if~~l~l~~ 186 (268)
T d1nj8a3 118 HTDLPIKIYQIVNTFRYETKHTRPL---IRLREIMTFKEAHTAHSTK-------EEAENQVKEAISIYKKFFDTLGIPY 186 (268)
T ss_dssp TTSCCCCEEEEECCBCCCCSCCBTT---TBCSBCSCEEEEEEEESSH-------HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhheEEeeccccccccccccccc---eeEEEEeeechhceecccc-------chhhHHHHHHHHHHHHHHHhcCcce
Confidence 2333699999999998653220000 01233321 111122100 0011236667777888899999754
No 21
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=85.64 E-value=1.2 Score=44.78 Aligned_cols=131 Identities=12% Similarity=0.156 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhh-cCC---CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc--CC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-SQN---INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK--RK 570 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-~~~---~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~--~~ 570 (809)
..+.+++++.+...||+|+.|-.|-..+.+... +.. .......+..+ +...-.+|+.+.+.....+..+.. +.
T Consensus 20 ~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~-~~~~~~lr~d~t~~~~r~~~~~~~~~~~ 98 (325)
T d1qe0a2 20 RYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQGNP 98 (325)
T ss_dssp HHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGGGCS
T ss_pred HHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhcc-ccccccccccccccHHHHHHhhcccccc
Confidence 345677888899999999999888665543221 111 01223444444 334567899999888887766543 23
Q ss_pred CCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 571 LERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 571 ~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
..++|+|-+|.||+..... ....+|..++++=+-|... ...|. ++-.++-..+..+|+
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~------~~~~rE~~Q~G~EiiG~~~--------~~ad~-Eii~l~~~~l~~~g~ 156 (325)
T d1qe0a2 99 NQPIKLYYNGPMFRYERKQ------KGRYRQFNQFGVEAIGAEN--------PSVDA-EVLAMVMHIYQSFGL 156 (325)
T ss_dssp SCSEEEEEEEEEECC-------------CCEEEEEEEEEESCCC--------HHHHH-HHHHHHHHHHHHTTC
T ss_pred ccchhhheecceeeecccc------CCccceeeecceeecCCcC--------cHHHH-HHHHHHHHHHHhhCC
Confidence 3469999999999865432 1246789999998888421 11222 344444555666664
No 22
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=82.28 E-value=2.1 Score=43.33 Aligned_cols=113 Identities=13% Similarity=0.018 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|++|...||.||-|-.+++... ... ...+....+ .....||+|-=--|= +-+..+. -++|
T Consensus 39 ~i~~~iR~ff~~~gflEV~TPil~~~~~----~~~--~~~f~~~~~--~~~~yL~~SpE~~lk----rll~~g~--~~if 104 (335)
T d1b8aa2 39 SVFKAVRDFFHENGFIEIHTPKIIATAT----EGG--TELFPMKYF--EEDAFLAESPQLYKE----IMMASGL--DRVY 104 (335)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCC----SSS--SSCCEEEET--TEEEEECSCSHHHHH----HGGGTTC--CEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCccCccCC----chh--hhhcccccc--ccccccccChHHHHH----HHHhhhh--hhHH
Confidence 4678899999999999999998865431 111 122333322 344578888443322 2233343 5899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||+||+.++.+ +.-+..|.+++-..... -.|..++...++.++..+
T Consensus 105 ~i~~~FR~e~~~-----~~rh~~Ef~~le~~~~~------------~~~~~~l~~~~e~~~~~~ 151 (335)
T d1b8aa2 105 EIAPIFRAEEHN-----TTRHLNEAWSIDSEMAF------------IEDEEEVMSFLERLVAHA 151 (335)
T ss_dssp EEEEEECCCSSC-----CSSCCSEEEEEEEEEES------------CSSHHHHHHHHHHHHHHH
T ss_pred Hhhccccccccc-----ccccchHHHhhhHHHHH------------HHhhhhHHHHHHHHHHHH
Confidence 999999865432 01144577777554442 236888888888777654
No 23
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=81.06 E-value=6.3 Score=40.05 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|+++...||.||-|-.+++...- +. .......+.-......|++|-=-.+=..+. .+. -++|
T Consensus 45 ~i~~~iR~ff~~~gfiEV~TP~L~~~~~e---g~---~~~~~~~~~~~~~~~yL~~Spel~lk~ll~----~g~--~~Vf 112 (356)
T d1l0wa3 45 RVIKAIWDFLDREGFVQVETPFLTKSTPE---GA---RDFLVPYRHEPGLFYALPQSPQLFKQMLMV----AGL--DRYF 112 (356)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSSBCCCSS---SS---CCCEEECTTSTTEEEECCSCSHHHHHHHHH----TTC--SEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCccccCCCc---cc---ccchhhhhcccccccCCCcChhHHHHHhhh----ccc--CcEE
Confidence 46778999999999999999988764210 00 111222222222334577764322211222 333 5899
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
++|++|+..+.+ ..+..|.++|-.-.++ +|+.++-..+|.++..
T Consensus 113 ~i~~~FRaE~~~------t~H~~EFtmLE~e~~~-------------~~~~~~m~~~E~li~~ 156 (356)
T d1l0wa3 113 QIARCFRDEDLR------ADRQPDFTQLDLEMSF-------------VEVEDVLELNERLMAH 156 (356)
T ss_dssp EEEEEECCCCCC------SSCCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHH
T ss_pred EEeccccccccC------CcchhhhhHHHHhhhH-------------HHHHHHHHHHHHHHHH
Confidence 999999865442 2355688888765554 4677877777776654
No 24
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=80.39 E-value=4.2 Score=41.06 Aligned_cols=113 Identities=19% Similarity=0.101 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|++|.+.||.||-|-.+++... ... ................|++|-=--+=..++. + --++|
T Consensus 28 ~i~~~iR~ff~~~gFiEV~TPil~~~~~----~~~--~~~f~~~~~~~~~~~yL~~Spql~~k~~l~~----g--~~~vf 95 (342)
T d1e1oa2 28 KILAAIRQFMVARGFMEVETPMMQVIPG----GAS--ARPFITHHNALDLDMYLRIAPELYLKRLVVG----G--FERVF 95 (342)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCC----SSC--CCCCEEEETTTTEEEEECSCSHHHHHHHHHH----T--CCEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCCccccCC----CCC--CcceeecccCCCcccccchhhHHHHHHHhhh----c--cccee
Confidence 4678899999999999999988765321 000 1112222112222345666632222112222 2 25799
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||+||+..+.. ..+..|.++|-.=+++ +|+.|+-..+|.+++.+
T Consensus 96 ~i~p~FR~E~~~------~rHl~EFtmlE~e~a~-------------~~~~d~m~~~e~l~~~i 140 (342)
T d1e1oa2 96 EINRNFRNEGIS------VRHNPEFTMMELYMAY-------------ADYHDLIELTESLFRTL 140 (342)
T ss_dssp EEEEEECCCCCC------C-CCSEEEEEEEEEES-------------CCHHHHHHHHHHHHHHH
T ss_pred eecccccccccc------ccchHHHHHHHHHHHh-------------hhhhhHHHhhhHHHHHH
Confidence 999999854322 2356788888877775 47889888888887754
No 25
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=80.35 E-value=2.3 Score=42.42 Aligned_cols=119 Identities=12% Similarity=-0.002 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCC-CCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQN-INNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRL 576 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~-~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~l 576 (809)
++.+.+|+++...||.||-|-.+++--.-..-.+. ......++. .-.....||+|-=--|=..++ .+. =++
T Consensus 19 ~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~--~~~~~~yL~~SPel~lk~lla----~g~--~~V 90 (293)
T d1nnha_ 19 KILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVE--IYGVKMRLTHSMILHKQLAIA----MGL--KKI 90 (293)
T ss_dssp HHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEE--ETTEEEEECSCSHHHHHHHHH----TTC--CEE
T ss_pred HHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCcccccccc--CCCceeecccChhhhHHHHHH----hcc--ccc
Confidence 46788999999999999987665532110000000 001112221 112334788876322211333 333 378
Q ss_pred EEEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 577 FEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 577 FEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
||||+||+..+...+ +..+-.|.++|-.=.+. .|+.|+-..+|.++..
T Consensus 91 f~I~~~FR~E~~~s~---t~RH~~EFtmLE~e~~~-------------~d~~d~m~~~e~li~~ 138 (293)
T d1nnha_ 91 FVLSPNIRLESRQKD---DGRHAYEFTQLDFEVER-------------AKMEDIMRLIERLVYG 138 (293)
T ss_dssp EEEEEEECCCCGGGC---SSSCCSEEEEEEEEEET-------------CCHHHHHHHHHHHHHH
T ss_pred eeechhhhcCcccCC---CCccchhhhhhcccccc-------------ccHHHHHHHHHHHHHH
Confidence 999999985332110 01245678887643332 3677777777666544
No 26
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=80.00 E-value=3.4 Score=41.99 Aligned_cols=112 Identities=16% Similarity=0.113 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|++|...||.||-|-.+++..- . .. .+.+.+.- ......||+|-=-.|=..+. .+. =++|
T Consensus 49 ~i~~~iR~ff~~~gflEV~TPiL~~~~~-e---g~--~~~f~~~~--~~~~~yL~~Spel~lk~ll~----~g~--~~vf 114 (353)
T d1eova2 49 GVCELFREYLATKKFTEVHTPKLLGAPS-E---GG--SSVFEVTY--FKGKAYLAQSPQFNKQQLIV----ADF--ERVY 114 (353)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCS-S---SS--SCCCEEEE--TTEEEEECSCTHHHHHHHHH----TTC--CEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCccCCCCC-c---ch--hcccccee--eCCcceeccchhhhhhhhhh----ccc--ccce
Confidence 4678899999999999999998875421 0 00 12222211 12234688886544434443 233 4799
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHh
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP 640 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~ 640 (809)
|||+||+.++.+ +..+..|.++|-.=.++. -++.++...+|.++..
T Consensus 115 ~I~~~FR~E~~~-----~~rH~pEFtmLE~y~a~~------------d~~~~i~~~~e~l~~~ 160 (353)
T d1eova2 115 EIGPVFRAENSN-----THRHMTEFTGLDMEMAFE------------EHYHEVLDTLSELFVF 160 (353)
T ss_dssp EEEEEECCCCCC-----CTTCCSEEEEEEEEEECS------------SCTHHHHHHHHHHHHH
T ss_pred eechhhhccccc-----cccccchhcccccccccc------------hhhHHHHHHHHHHHhh
Confidence 999999965432 112446888887655541 1366777777777654
No 27
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}
Probab=69.22 E-value=2.9 Score=40.52 Aligned_cols=92 Identities=10% Similarity=-0.140 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCC-CCCcEEeeC---CCCccccccchhhHHHHHHHHHHHhc-
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNI-NNYPIELLN---PISKKFNTMRSTLIGSLVNNICYNLK- 568 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~-~~~~i~L~N---Pis~e~s~lR~SLlpgLL~~l~~N~~- 568 (809)
.+++.+-+++.+...||+||.+-.+++.+....-+ ... .+....+.. ....+.-+||++--|++....+.-..
T Consensus 43 ~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s 122 (272)
T d1hc7a2 43 WENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRS 122 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehhhceecc
Confidence 45677778888899999999999998877543221 110 122233332 33345569999999999987765543
Q ss_pred CCCCCeeEEEEeeEEecCC
Q psy9573 569 RKLERIRLFEIANVYLHDK 587 (809)
Q Consensus 569 ~~~~~i~lFEiG~Vf~~~~ 587 (809)
.+.-+++++|+|.+|+...
T Consensus 123 ~~~LPlr~~~~~~~fR~E~ 141 (272)
T d1hc7a2 123 WRDLPQLLNQWGNVVRWEM 141 (272)
T ss_dssp GGGCCEEEEEEEEEECCCS
T ss_pred ccccceeeeeccccccccc
Confidence 3444699999999998653
No 28
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=69.11 E-value=8.5 Score=37.95 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEE
Q psy9573 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLF 577 (809)
Q Consensus 498 ~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lF 577 (809)
++.+.+|+.+.+.||.||-|-.++....-. .+ ..+. .|-..+ ...|++|--- ..+.+.... =++|
T Consensus 20 ~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~--~~----~~f~-~~~~~~-~~~L~~Spel-~k~ll~~g~------~~if 84 (304)
T d1n9wa2 20 ALVRGFRRYLDRQDFTEIFTPKVVRAGAEG--GS----GLFG-VDYFEK-RAYLAQSPQL-YKQIMVGVF------ERVY 84 (304)
T ss_dssp HHHHHHHHHHHHTTCEECCCC------------------------------------CHH-HHHHHHHHH------SEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCccCCCCCCC--CC----ceEC-Cccccc-chhccccHHH-HHHHhhccc------ccce
Confidence 467889999999999999999886542110 00 1111 121222 2356666553 344444332 2699
Q ss_pred EEeeEEecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhc
Q psy9573 578 EIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPI 641 (809)
Q Consensus 578 EiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~l 641 (809)
+||+||+.++.. +..+..|..++-.-.+. ..++.++..++|.++...
T Consensus 85 ~i~~~FR~ee~~-----~~rh~~EF~~le~~~~~------------~~~~~~~~~l~E~l~~~~ 131 (304)
T d1n9wa2 85 EVAPVWRMEEHH-----TSRHLNEYLSLDVEMGF------------IADEEDLMRLEEALLAEM 131 (304)
T ss_dssp EEEEC------------------CCEEEEEEEES------------CSSHHHHHHHHHHHHHHH
T ss_pred eehhhccccccc-----ccccccHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHH
Confidence 999999865421 01245677777654443 125667888877766543
No 29
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=68.19 E-value=1.5 Score=34.49 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=29.7
Q ss_pred ccCHHHHhhccCCCCCHHHHHHHHHhcCceee
Q psy9573 2 QIPENWLRTIINPKLSSNDLANLLTMSGLETE 33 (809)
Q Consensus 2 ~is~~WL~e~v~~~~~~~el~~~Lt~~G~EVe 33 (809)
.++.+++++++-++++.+++.+.|+.+|++++
T Consensus 6 ~l~~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~ 37 (75)
T d1jjcb2 6 PFRPEYANRLLGTSYPEAEQIAILKRLGCRVE 37 (75)
T ss_dssp EECHHHHHHHHTCCCCHHHHHHHHHHTTCEEE
T ss_pred EECHHHHHHHhCCCCCHHHHHHHHHHcCCceE
Confidence 47889999999999999999999999999885
No 30
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=65.18 E-value=4.7 Score=39.10 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhh-----cCCCCCCcEEeeC-C--CCccccccchhhHHHHHHHHHHHhc
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDF-----SQNINNYPIELLN-P--ISKKFNTMRSTLIGSLVNNICYNLK 568 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~-----~~~~~~~~i~L~N-P--is~e~s~lR~SLlpgLL~~l~~N~~ 568 (809)
.++.+-+++.+ ..||+|+.|-.+++.+.+..- ... ++...+.. + ...+.=+||++-=|++....+...+
T Consensus 37 ~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~--~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~ 113 (265)
T d1nj1a3 37 KNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFE--DEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVR 113 (265)
T ss_dssp HHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTT--TTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-HhcCceehhhhhhhhhhhhhccccccccc--ccceeeeccCccccceeEEeecccccceEEeeeeeec
Confidence 34556666654 569999999999887654321 111 22333332 2 1233457999999999999887654
Q ss_pred -CCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeE--EeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCee
Q psy9573 569 -RKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKK--IAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNF 645 (809)
Q Consensus 569 -~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~--l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~ 645 (809)
++.-+++++|+|.+|+.......+ -...+|... ....+.... ......+..+....+.++..+|+.+
T Consensus 114 SyrdLPlr~~q~~~~fR~E~~~~~G---l~R~reF~~~~d~~~~~~~~-------~~~~~e~~~~~~~~~~~~~~l~l~~ 183 (265)
T d1nj1a3 114 SHTDLPMRFYQVVNTFRYETKHTRP---LIRVREITTFKEAHTIHATA-------SEAEEQVERAVEIYKEFFNSLGIPY 183 (265)
T ss_dssp BTTTCCEEEEEEEEEECCCCSCCBT---TTBCSEEEEEEEEEEEESSH-------HHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccccceEEEeeccceeeecccCcC---CEEEEEEEEeccceeecCCH-------HHHHHHhhhhHHHHHHHHhhcCCce
Confidence 233369999999999865332000 012344421 111121110 0012235567777788888888754
No 31
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=63.97 E-value=3.2 Score=41.19 Aligned_cols=136 Identities=10% Similarity=0.003 Sum_probs=81.5
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHh-cCCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNL-KRKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~-~~~~~ 572 (809)
.+++.+-+++.+...||+||.+-.+++.+....-+ +.-.++...+..--..+.-+||++=-|.+....+.-. +.+.=
T Consensus 33 ~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~sy~dL 112 (291)
T d1nyra4 33 RREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYREL 112 (291)
T ss_dssp HHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEecccccc
Confidence 45667788888999999999999999998654321 1000222222221223455899999998877665422 22223
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCC---ccceeEEeEe-eeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSG---YKELKKIAVI-AYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~---~~E~~~l~~~-~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~ 644 (809)
+++++|++.||+...... ..+ .+|..+.-+. ++-. + ...--+..+...++.+++.||+.
T Consensus 113 Plr~~~~~~~fR~E~~~~-----~~Gl~Rvr~F~~~d~~~f~~~---e-----q~~~e~~~~~~~~~~i~~~lGl~ 175 (291)
T d1nyra4 113 PIRIAELGTMHRYEASGA-----VSGLQRVRGMTLNDSHIFVRP---D-----QIKEEFKRVVNMIIDVYKDFGFE 175 (291)
T ss_dssp CEEEEEEEEEECCCCTTT-----CBTTTBCSEEEEEEEEEEECG---G-----GHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ceEEeeccceeecCCCcc-----cccccceeeeeeeeheeecCC---c-----ccHHHHHHHHHHHHHHhhhcCcC
Confidence 599999999998654320 011 2344433222 2210 0 01123677788888899999963
No 32
>d2qw7a1 b.40.15.1 (A:1-96) Carbon dioxide concentrating mechanism protein CcmL {Synechocystis sp. (strain PCC 6803) [TaxId: 1148]}
Probab=53.27 E-value=15 Score=30.08 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=36.8
Q ss_pred eEEEEEEEEeeCC--CCCceeEEEEecC--C--ceEEEEeCCCcccCCCEEEEEecCcee
Q psy9573 45 IIIGKIINIIKHP--DIDNFNICKVDTY--K--NILDIVCNIPNIRVGLKVPCAIIGSSL 98 (809)
Q Consensus 45 vvvg~i~~~~~hp--~ad~L~~~~v~~g--~--~~~~iv~ga~n~~~g~~v~~a~~Ga~l 98 (809)
-|+|.|.+-.+|| ...||-+++--.+ + +...|.+-+-...+|++|.++. |+.-
T Consensus 5 rViG~vvaT~K~~~L~G~kLlvvqpl~~~~~~~g~~~VA~D~vGAG~Ge~Vlv~~-Gs~A 63 (96)
T d2qw7a1 5 KVLGTVVSTSKTPNLTGVKLLLVQFLDTKGQPLERYEVAGDVVGAGLNEWVLVAR-GSAA 63 (96)
T ss_dssp EEEEEEECSEECGGGTTCCEEEEEEECTTSCEEEEEEEEEESSCCCTTCEEEEEE-GGGG
T ss_pred EEEeEEEEeeecCCCCCcEEEEEEEcccCCCcCCCEEEEEECCCCCCCCEEEEeC-cHHH
Confidence 5899999999999 4556766663322 2 3345666566677899999985 6544
No 33
>d2hd3a1 b.40.15.1 (A:1-95) Ethanolamine utilization protein EutN {Escherichia coli [TaxId: 562]}
Probab=50.57 E-value=14 Score=30.14 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=36.4
Q ss_pred eEEEEEEEEeeCCC--CCceeEEEEecC--C--ceEEEEeCCCcccCCCEEEEEecCcee
Q psy9573 45 IIIGKIINIIKHPD--IDNFNICKVDTY--K--NILDIVCNIPNIRVGLKVPCAIIGSSL 98 (809)
Q Consensus 45 vvvg~i~~~~~hp~--ad~L~~~~v~~g--~--~~~~iv~ga~n~~~g~~v~~a~~Ga~l 98 (809)
-|+|.|++-.|||. ..||-+++--.. + ....|.+-.-...+|++|.++. |+.-
T Consensus 5 rViG~vvaT~K~~~L~G~kLlvvqpl~~~~~~~g~~~VA~D~vGAG~Ge~Vlv~~-Gs~A 63 (95)
T d2hd3a1 5 VVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAIDNIGAGTGEWVLLVS-GSSA 63 (95)
T ss_dssp EEEEEEECSSBCGGGTTCEEEEEEEECTTSCEEEEEEEEEESSCCCTTCEEEEEE-THHH
T ss_pred EEEEEEEEeeecCCCCCcEEEEEEEcccCCCCCCCEEEEEECCCCCCCCEEEEeC-CHHH
Confidence 58999999999994 556666654332 2 3345555556677899999976 6643
No 34
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=50.30 E-value=7.1 Score=38.55 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=79.9
Q ss_pred chHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhc-CCCC
Q psy9573 496 GYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLK-RKLE 572 (809)
Q Consensus 496 ~~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~-~~~~ 572 (809)
.+++.+-+++.+...||+||.+-.+++.+..+.-+ +.-.++...+.+ ..+.-+||++-=|.+....+.-.+ ++.=
T Consensus 33 ~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~--~~~~~~L~Pt~e~~~~~~~~~~~~sy~~L 110 (291)
T d1qf6a4 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS--ENREYCIKPMNCPGHVQIFNQGLKSYRDL 110 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE--TTEEEEECSSSHHHHHHHHTTSCEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccc--cchhhcccccCcHHHHHHHHccccchhhc
Confidence 45567778888999999999999999987654321 000022333332 234458999998888887754332 2222
Q ss_pred CeeEEEEeeEEecCCCCCCCCCccCC---ccceeEEeE-eeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCe
Q psy9573 573 RIRLFEIANVYLHDKFIKDSPFTVSG---YKELKKIAV-IAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN 644 (809)
Q Consensus 573 ~i~lFEiG~Vf~~~~~~~~~~~~~~~---~~E~~~l~~-~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~ 644 (809)
+++++|++.+|+...... ..+ .+|..+--+ .++-. ....-.|+++-.....++..+|++
T Consensus 111 Pl~~~q~~~~fR~E~~~~-----~~Gl~R~reF~~~d~h~f~~~--------e~~~~e~~~~~~~~~~i~~~lGl~ 173 (291)
T d1qf6a4 111 PLRMAEFGSCHRNEPSGS-----LHGLMRVRGFTQDDAHIFCTE--------EQIRDEVNGCIRLVYDMYSTFGFE 173 (291)
T ss_dssp SEEEEEEEEEECCCCGGG-----CBTTTBCSEEEEEEEEEEECG--------GGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred CeeEeecceeeecccccc-----cccccccccceeccceeEecc--------hhhHHHHHHHHHHHHHHHHHcCCc
Confidence 699999999998543210 001 233333221 12210 011223777777777888888874
No 35
>d2rcfa1 b.40.15.1 (A:1-82) Carboxysome shell protein {Thiobacillus neapolitanus [TaxId: 927]}
Probab=49.86 E-value=11 Score=29.98 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=35.1
Q ss_pred eEEEEEEEEeeCCCCCceeEEEEecCC-ceEEEEeCCCcccCCCEEEEEecCcee
Q psy9573 45 IIIGKIINIIKHPDIDNFNICKVDTYK-NILDIVCNIPNIRVGLKVPCAIIGSSL 98 (809)
Q Consensus 45 vvvg~i~~~~~hp~ad~L~~~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~Ga~l 98 (809)
-|+|.|.+-.|||.-...++.-|+.-. +...|.+-.-...+|++|.++. |+.-
T Consensus 5 rViG~vvsT~K~~~L~g~kLlvv~~~~~g~~~VA~D~vGAG~Ge~Vl~~~-Gs~A 58 (82)
T d2rcfa1 5 QVEKTLVSTNRIADMGHKPLLVVWEKPGAPRQVAVDAIGCIPGDWVLCVG-SSAA 58 (82)
T ss_dssp EEEEECCSEEECTTSCSSCEEEEESSTTSCCEEEEESSCCCTTCEEEEEE-TTHH
T ss_pred EEEeEEEEeeEcCCCCCCEEEEEEECCCCcEEEEEeCCCCCCCCEEEEeC-CHHH
Confidence 489999999999965544444444322 2344555555677899999986 6543
No 36
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Probab=46.43 E-value=18 Score=34.90 Aligned_cols=111 Identities=5% Similarity=-0.047 Sum_probs=71.2
Q ss_pred HHHHHHhCCceEeeeccccChHHHhhhcCCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHhcCCCCCeeEEEEeeE
Q psy9573 503 IRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANV 582 (809)
Q Consensus 503 lr~~L~~~Gf~Evitysf~s~~~~~~~~~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~~~~~~~i~lFEiG~V 582 (809)
+.+.....||+|+.|-+|-.-+.... .+-. . .+...=+||+=+.+++.+.++.+.. ..+.|+|=+|.|
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e~~~~--------~~F~-D-~~g~~l~LRpD~T~~iaR~~~~~~~--~~p~k~~Y~g~V 79 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAEEPAG--------NFFL-D-RKGNLFSIREDFTKTVLNHRKRYSP--DSQIKVWYADFV 79 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECSSCCS--------SCEE-E-TTSCEEEECCCHHHHHHHHHTTCTT--CCCEEEECCEEE
T ss_pred HHHHHHHcCCceeecCcccccccccc--------ceeE-c-CCCCEEEECCCCcHHHHHHHHHcCC--CCCeeeeEEeeE
Confidence 44555678999999988865432111 1111 0 1234447999999999998776533 346899999999
Q ss_pred EecCCCCCCCCCccCCccceeEEeEeeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCC
Q psy9573 583 YLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 583 f~~~~~~~~~~~~~~~~~E~~~l~~~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi 643 (809)
|+..+. ..+|..++|+=+-|... ...| .++-.+.-.+|+.+|+
T Consensus 80 fR~~~~---------~~re~~Q~G~EiiG~~~--------~~aD-~Evi~l~~~~l~~lgi 122 (275)
T d1usya_ 80 YRYSGS---------DLVAEYQLGLEKVPRNS--------LDDS-LEVLEIIVESASEFFE 122 (275)
T ss_dssp EEEETT---------EEEEEEEEEEEEESCCS--------HHHH-HHHHHHHHHHHHHHCC
T ss_pred EEeCCC---------cccceeecCceeechhh--------HHHH-HHHHHHHHHHHHhhcc
Confidence 986542 46788899988888421 1223 3444555556777775
No 37
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=41.59 E-value=25 Score=34.70 Aligned_cols=139 Identities=9% Similarity=-0.016 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHhCCceEeeeccccChHHHhhhc--CCCCCCcEEeeCCCCccccccchhhHHHHHHHHHHHh-cCCCCC
Q psy9573 497 YQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFS--QNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNL-KRKLER 573 (809)
Q Consensus 497 ~~~~~~lr~~L~~~Gf~Evitysf~s~~~~~~~~--~~~~~~~i~L~NPis~e~s~lR~SLlpgLL~~l~~N~-~~~~~~ 573 (809)
+.+.+-..+.+...||+|+.+-.|+.++....-+ +...++...+. .+.-.|+++-=++|...-.... +...-+
T Consensus 60 ~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~~----~~~~~LipTsE~~l~~~~~~~i~~~~~LP 135 (311)
T d1seta2 60 LALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNALHSGEILPYEALP 135 (311)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT----TSSEEECSSTHHHHHHTTTTCEEEGGGCS
T ss_pred HHHHHHHHHhhhcccceEEeechhhccchhhhccccccccccccccc----ccceeecccccchhhhhhhhhhhhhhhcc
Confidence 3455666777889999999999999998766532 22112223332 2344777666666554433222 112225
Q ss_pred eeEEEEeeEEecCCCCCCCCCccCC--ccceeEEeE-eeeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCeee
Q psy9573 574 IRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAV-IAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646 (809)
Q Consensus 574 i~lFEiG~Vf~~~~~~~~~~~~~~~--~~E~~~l~~-~~~G~~~~~~w~~~~~~~df~dlKg~le~ll~~lgi~~~ 646 (809)
+|++..+.||+...+. .+..+... .+|..++-. +++-..... ...-+.++....+.+++.|++.|+
T Consensus 136 lr~~~~s~cfR~Eag~-~g~~trGL~RvhQF~kvE~~~~~~~~~e~------s~~~~~~~~~~~~~~~~~L~lpyr 204 (311)
T d1seta2 136 LRYAGYAPAFRSEAGS-FGKDVRGLMRVHQFHKVEQYVLTEASLEA------SDRAFQELLENAEEILRLLELPYR 204 (311)
T ss_dssp EEEEEEEEEECCCCSC-TTSSCSTTSSCSEEEEEEEEEEECSCHHH------HHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEeecccchhhhcc-ccccchhhhhhcccchhhhheeecccccc------chhHHHHHHHHHHHHHHhhCCcch
Confidence 9999999999875421 01111111 245554443 233211000 111377899999999999998653
No 38
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}
Probab=33.14 E-value=24 Score=27.38 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=27.8
Q ss_pred EEEEEEEeeCCCCCceeEEEEecCCceEEEEe--CCCcccCCCEEEEEe
Q psy9573 47 IGKIINIIKHPDIDNFNICKVDTYKNILDIVC--NIPNIRVGLKVPCAI 93 (809)
Q Consensus 47 vg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~--ga~n~~~g~~v~~a~ 93 (809)
-|||++++. + ...+.||.|+..+.|-. -..++++|++|.|-.
T Consensus 6 P~kVvei~~----~-~~~a~vd~~G~~r~v~l~lv~e~v~vGDyVLVH~ 49 (76)
T d3d3ra1 6 PSQVVAVDN----E-RQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHI 49 (76)
T ss_dssp CEEEEEEET----T-TTEEEEEETTEEEEEECTTBSSCCCTTCEEEEEE
T ss_pred cEEEEEEcC----C-CcEEEEECCCeEEEEEEEeccCCCCCCCEEEEec
Confidence 378888843 1 23578898874445533 223599999998864
No 39
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=32.46 E-value=60 Score=24.61 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.5
Q ss_pred EEEEEEeeCCCCCceeEEEEecCCceEEEEeCC-CcccCCCEEEEEe
Q psy9573 48 GKIINIIKHPDIDNFNICKVDTYKNILDIVCNI-PNIRVGLKVPCAI 93 (809)
Q Consensus 48 g~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~ga-~n~~~g~~v~~a~ 93 (809)
|||+++.. ....||.++..+.|-..- +.+++|++|.|-.
T Consensus 6 ~~Vv~i~~-------~~A~vd~~G~~r~v~l~lv~e~~vGDyVLVh~ 45 (71)
T d2z1ca1 6 GKVIEVNG-------PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHT 45 (71)
T ss_dssp EEEEEEET-------TEEEEEETTEEEEEECTTSTTCCTTCEEEEET
T ss_pred EEEEEECC-------CEEEEEcCCeEEEEEEEeeCCCCCCCEEEEee
Confidence 78888842 267778887445554443 6899999999864
No 40
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=27.41 E-value=18 Score=36.06 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=54.8
Q ss_pred HHHHHHHHHHH--hCCceEeeeccccChHHHhh------hcCC---CC----CCcEEeeC--------CC--Cccccccc
Q psy9573 498 QSLFSIRHQLA--FADYQEVINYSFIEDSLEKD------FSQN---IN----NYPIELLN--------PI--SKKFNTMR 552 (809)
Q Consensus 498 ~~~~~lr~~L~--~~Gf~Evitysf~s~~~~~~------~~~~---~~----~~~i~L~N--------Pi--s~e~s~lR 552 (809)
++.+.+|+.++ ..||+|+.|-.+.+++..+. |... .. -..++..| |+ ..+...+|
T Consensus 44 ~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 123 (331)
T d1b76a2 44 NLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLR 123 (331)
T ss_dssp HHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGGGEEEEC
T ss_pred HHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccCCccccc
Confidence 34455555543 46999999999999876543 1100 00 01112222 22 34667899
Q ss_pred hhhHHHHHHHHHHHh--cCCCCCeeEEEEeeEEecC
Q psy9573 553 STLIGSLVNNICYNL--KRKLERIRLFEIANVYLHD 586 (809)
Q Consensus 553 ~SLlpgLL~~l~~N~--~~~~~~i~lFEiG~Vf~~~ 586 (809)
+-.-++.+-....++ .++.-+++++|+|++|+..
T Consensus 124 ~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E 159 (331)
T d1b76a2 124 PETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNE 159 (331)
T ss_dssp SCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCC
T ss_pred CcchhhHHHHHHhHHhccccccchhhhhccceeccc
Confidence 999988887775542 3333459999999999754
No 41
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}
Probab=25.18 E-value=32 Score=33.16 Aligned_cols=62 Identities=6% Similarity=0.156 Sum_probs=42.0
Q ss_pred EEEEEcCCCCHHHHHHHHHhccCCCCcccceEEEEEEEEEecCCCCCCceEE-EEEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy9573 719 IVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSF-AFRCILQDPKKTLKNNIINNAINALIN 797 (809)
Q Consensus 719 lS~vv~~~~~~~~i~~~i~~~~~~~~~~~~l~~v~lfD~Y~g~~i~~gkkSl-~~rl~~~~~~rTLt~~ev~~~~~~ii~ 797 (809)
+||.+++++..+++.+.+++.+ +. +..| ++++ +||+-+-. .-|.|||+.+++.+.+
T Consensus 298 ~~f~~~~~~~~~~~~~~l~~~G--------i~------~~~G------~~~~g~~Ris~~~---~~t~edV~~li~~l~e 354 (360)
T d1bjna_ 298 VPFQLADSALDKLFLEESFAAG--------LH------ALKG------HRVVGGMRASIYN---AMPLEGVKALTDFMVE 354 (360)
T ss_dssp EEEEESSGGGHHHHHHHHHHTT--------EE------CCBC------CTTTCSEEEECCT---TSCHHHHHHHHHHHHH
T ss_pred EEEEcCCcccHHHHHHHHHHCC--------CE------eecC------CCccCeEEEEecC---CCCHHHHHHHHHHHHH
Confidence 7899999999999999888642 21 2233 2111 37887644 4489999998888776
Q ss_pred HHHHhcC
Q psy9573 798 SVCKNFN 804 (809)
Q Consensus 798 ~L~~~~~ 804 (809)
.. +++|
T Consensus 355 ~~-~~~~ 360 (360)
T d1bjna_ 355 FE-RRHG 360 (360)
T ss_dssp HH-HHHC
T ss_pred HH-HHcC
Confidence 44 4444
No 42
>d1ni5a3 b.153.1.2 (A:315-432) tRNA-Ile-lysidine synthetase, TilS, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.59 E-value=59 Score=27.10 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCCeEEecCCe-eeee-------------cCCcEEEEeCCceeEecccccCccceee
Q psy9573 277 SGELNIRWGNIGETIKISNDL-IIKI-------------DKNIGIISDNFKIISLSGIINGFDASVT 329 (809)
Q Consensus 277 ~~~i~vr~a~~~e~~~~L~~~-~~~l-------------~~~~lvi~D~~~~lslagi~g~~~s~v~ 329 (809)
...+.||.-..| .|.++... ..+| .+..+++++++++++++|+.-.+....+
T Consensus 39 ~~~l~vr~r~~g-~~~~~~~~~~k~LK~l~qe~~IPpw~R~~~Pll~~~~~lv~v~gl~v~~~~~~~ 104 (118)
T d1ni5a3 39 DEAVSVRFKAPG-LLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAE 104 (118)
T ss_dssp TSCEEEESCCCS-EECBTTCSSCEEHHHHHHHHTCCGGGTTSSCEEEETTEEEEETTTEEBGGGBCS
T ss_pred CCcEEEEecCCC-eEEECCCCCChhHHHHHHHcCCCHHHhCeeeEEEECCeEEEEeeEEEccccccC
Confidence 346999987777 58888653 3333 3678999999999999999766666543
No 43
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=22.50 E-value=94 Score=24.59 Aligned_cols=41 Identities=29% Similarity=0.213 Sum_probs=27.6
Q ss_pred EEEEEEEEeeCCCCCceeEEEEecCCceEEEEe-------CCCcccCCCEEEEEe
Q psy9573 46 IIGKIINIIKHPDIDNFNICKVDTYKNILDIVC-------NIPNIRVGLKVPCAI 93 (809)
Q Consensus 46 vvg~i~~~~~hp~ad~L~~~~v~~g~~~~~iv~-------ga~n~~~g~~v~~a~ 93 (809)
+-|||+++.. ...+|+.++..+.|-- +-|.+++|++|.|-.
T Consensus 5 IP~kV~~i~~-------~~A~vd~~Gv~r~v~l~lv~~~~~~~e~~vGDyVLVH~ 52 (90)
T d2ot2a1 5 VPGQIRTIDG-------NQAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_dssp EEEEEEEECS-------SEEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEET
T ss_pred ccEEEEEEcC-------CEEEEEeCCcEEEEEEeccccccCCcccCCCCEEEEeh
Confidence 4589999853 2588888873344322 235789999999864
No 44
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.92 E-value=56 Score=31.55 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=50.9
Q ss_pred ccccchhhHHHHHHHHHH--HhcCCCCCeeEEEEeeEEecCCCCCCCCCccCCccceeEEeEeee-CCCCCCCCCCCCCc
Q psy9573 548 FNTMRSTLIGSLVNNICY--NLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAY-GPLLEPQWGEENRN 624 (809)
Q Consensus 548 ~s~lR~SLlpgLL~~l~~--N~~~~~~~i~lFEiG~Vf~~~~~~~~~~~~~~~~~E~~~l~~~~~-G~~~~~~w~~~~~~ 624 (809)
...||+...||.+-.-.. ...++.-++++.|+|++|+...++.....--.-.+|..+.-+.+. -+.....
T Consensus 112 ~~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~------- 184 (290)
T d1g5ha2 112 SGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQ------- 184 (290)
T ss_dssp SCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHH-------
T ss_pred cceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCCcchHH-------
Confidence 357999999998876643 223444469999999999854321000000011355555544333 2111111
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q psy9573 625 IDYFDLKNDLENLFFPIKL 643 (809)
Q Consensus 625 ~df~dlKg~le~ll~~lgi 643 (809)
=|.........++..+|+
T Consensus 185 -~~~~~~~~~~~~~~~lGi 202 (290)
T d1g5ha2 185 -WLDFWLRHRLLWWRKFAM 202 (290)
T ss_dssp -HHHHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHHHHHHHHHcCC
Confidence 166778888899999997
Done!