RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9573
(809 letters)
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 817 bits (2112), Expect = 0.0
Identities = 266/817 (32%), Positives = 449/817 (54%), Gaps = 30/817 (3%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
M+ E WLR +NP + S+ LAN +TM+GLE + +E F +++G+++ +HP+ D
Sbjct: 1 MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD 60
Query: 61 NFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI-- 117
+ KV+ +LDIVC PN R GL+V A IG+ L F I K K+
Sbjct: 61 KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVL-----PGDFKI---KAAKLRG 112
Query: 118 -KSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSL 176
S G+LCS +L I++ + + ELP DAPIG + +Y K ++ I +TPNR DCL +
Sbjct: 113 EPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGI 172
Query: 177 LGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPK 236
+G+AR++++L+ PL + LP+ + A + C R+ GR+++GIN KA TP
Sbjct: 173 IGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPL 232
Query: 237 WMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISND 296
WMK +L G + + + D+TNYV+LELG P++ FD +I G + +R GET+ + +
Sbjct: 233 WMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDG 292
Query: 297 LIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNL 356
K++ + +I+D+ K +++ GI G + V T+++ L AF+ P SI G++ + L
Sbjct: 293 TEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGL 352
Query: 357 VTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSE 416
T++S+R+ERG+D + K +ER T L+I+ICG + + I ++ +P R I +R
Sbjct: 353 HTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVIDITNE-ATLPKRATITLRRS 411
Query: 417 RVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGF 476
++ +++G + ++++++I RL + + + + P+ RFD+EIEED++EE+ R+YG+
Sbjct: 412 KLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGY 471
Query: 477 ENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNY 536
NIP + +E SL ++ L YQEVI YSF++ +++ +
Sbjct: 472 NNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVE-- 529
Query: 537 PIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTV 596
+ L +PIS + + MR +L L+ + YN R+ R+R+FE F+ D+
Sbjct: 530 ALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLR-----FVPDTQ-AP 583
Query: 597 SGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF----FPIKLNFLKINNSI 652
G ++ +A + G E W +D++DLK DLE++ ++ F N
Sbjct: 584 LGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPA 643
Query: 653 LHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQISKF 712
LHP +SA I+ K + IGF+G +HP L++K DL + FE++ +L R +P +IS+F
Sbjct: 644 LHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVFELEWNKLADRVVPQAREISRF 703
Query: 713 PNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAF 772
P RDI + +N+ D++ K N + ++LFD Y GK + + KS A
Sbjct: 704 PANRRDIAVVVAENVPAADILSEC---KKVGVN--QVVGVNLFDVYRGKGVAEGYKSLAI 758
Query: 773 RCILQDPKKTLKNNIINNAINALINSVCKNFNAKLRN 809
ILQD +TL+ I + + ++ + F A LR+
Sbjct: 759 SLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD 795
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 765 bits (1978), Expect = 0.0
Identities = 223/825 (27%), Positives = 389/825 (47%), Gaps = 48/825 (5%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
M I WL+ ++ + DLA +T +G+E + + +++G I + K
Sbjct: 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKGSG-- 58
Query: 61 NFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI-- 117
NIC+VD + + IVC PN+ G V A +G L I K+ K+
Sbjct: 59 --NICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRL-----PGGIKI---KRAKLRG 108
Query: 118 -KSYGLLCSEYDLKINNKNKY------LFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNR 170
+S G++CS ++ I++ +F P + G + N+ LTPNR
Sbjct: 109 ERSEGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNR 168
Query: 171 GDCLSLLGIAREISILSNTPLKL--LNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGI 228
D LS++G A E++ L T + + T + L V I + +S R+++ +
Sbjct: 169 ADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNV 228
Query: 229 NPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISG-ELNIRWGNI 287
+ + +P W++ RL +G + ++ + DI+NYV+LE G P+++FD I E+ +R
Sbjct: 229 SIEP-SPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKD 287
Query: 288 GETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSI 347
ET+ ++ K+ +IS+ + I+L+G++ G + VT T ++ + A + P SI
Sbjct: 288 EETMTTLDNNERKLVDTDIVISNGQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSI 347
Query: 348 RGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPV 407
R S NL +E+S RFE+GI + ++R L+ E+
Sbjct: 348 RHTSRRLNLRSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVL--QDRVSSGDLGSF 405
Query: 408 RKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDII 467
I + +E+V K +G L+N EI +IF +L F K V P+ R D+ I+ED+I
Sbjct: 406 VTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLI 465
Query: 468 EEIIRIYGFENIPISLPITVS-KISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLE 526
EE+ RIYG++ IP SLP+ + + +++ L A + I YS +
Sbjct: 466 EEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA 525
Query: 527 KDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHD 586
KDF+ I LL P+S+ T+R +L+ L+ YN+ RK + +RL+EI V+ +
Sbjct: 526 KDFALQERP-TISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGN 584
Query: 587 KFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLF--FPIKLN 644
E++ ++ I G + W + ID+F K ++ + ++ +
Sbjct: 585 G-------EGELPDEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFS 637
Query: 645 FLKINNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVD--ALELQKRQ 702
+ LHP R+A++ + ++IGFIGE+HP + DL FE++ A+
Sbjct: 638 YKAGKIEGLHPGRTAIVSLEGQDIGFIGELHPQVAADNDLK-RTYVFELNYDAMMQVAVG 696
Query: 703 IPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKK 762
NY QI KFP V RDI N ++ ++ + NN + I+QS +FD Y G+
Sbjct: 697 YINYEQIPKFPGVTRDIALEVNHDVPSSELKQII---HNNGED--ILQSTLVFDVYEGEH 751
Query: 763 LKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKL 807
L+ +KS A R D + TL + ++ + ++ ++ A +
Sbjct: 752 LEKGKKSVAIRLNYLDTEDTLTDERVSKIHDKILEALQAEG-ATI 795
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 753 bits (1948), Expect = 0.0
Identities = 208/820 (25%), Positives = 366/820 (44%), Gaps = 52/820 (6%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
M++P +WL+ + S L L G ET++IE PI ++ +++ P
Sbjct: 1 MRVPFSWLKAYVPELESPEVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPG-T 59
Query: 61 NFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKI--- 117
+D +++V N R G+ V A+ G+ L + +K + + I
Sbjct: 60 RLKRLVLDA-GRTVEVVSGAENARKGIGVALALPGTELPGLGQK------V-GERVIQGV 111
Query: 118 KSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLL 177
+S+G+ S +L + L E PEDA + +++TPNR D L LL
Sbjct: 112 RSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWPEEVVLDLEVTPNRPDALGLL 171
Query: 178 GIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIRGINPKALTPKW 237
G+AR++ L L + +K+ + F+ G+ +P W
Sbjct: 172 GLARDLHAL-GYALVEPEAALKAEALPLPFALKVEDPEGAPHFTLGYAFGLRVAP-SPLW 229
Query: 238 MKIRLEDSGQKLVSVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETIKISNDL 297
M+ L +G + ++ + D+TNYVMLE P++ FDL + + +R GE +K + +
Sbjct: 230 MQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGV 289
Query: 298 IIKIDKNIGIISDNF----KIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNH 353
+ +I+ + L+G++ G ++ V +T+ I L VA + P SIR +
Sbjct: 290 ERTLHPEDLVIAGWRGEESFPLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARR 349
Query: 354 YNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKV 413
+ L TE+S+RFERG+D + R +L+ + G ++++ + + + I
Sbjct: 350 HGLRTEASHRFERGVDPLGQVPAQRRALSLLQALAGA---RVAEALLEAGSPKPPEAIPF 406
Query: 414 RSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRI 473
R E ++LG E I RL + + V PP+HR DL +EED++EE+ RI
Sbjct: 407 RPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARI 466
Query: 474 YGFENIPISLP--ITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQ 531
G+E IP++LP ++ Y+ +R L+ +QEV YSF++ + F
Sbjct: 467 QGYETIPLALPAFFPAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF-- 524
Query: 532 NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRK-LERIRLFEIANVYLHDKFIK 590
++ + LLNP++ + +R+ L LV + NL ER LFE+ V+
Sbjct: 525 RLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR------ 578
Query: 591 DSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFP--IKLNFLKI 648
+E +A + +G + W +E R YF LK LE LF +
Sbjct: 579 --------EREETHLAGLLFGEGVGLPWAKE-RLSGYFLLKGYLEALFARLGLAFRVEAQ 629
Query: 649 NNSILHPNRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIPNYIQ 708
LHP S + + + +GF+G +HP + Q+ +LP FE+ L L + +
Sbjct: 630 AFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELR-LPLPDKP-LAFQD 686
Query: 709 ISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKDNEK 768
S+ P RD+ + +V + + ++S++LFD Y G L + K
Sbjct: 687 PSRHPAAFRDLAVVVPAPTPYGEVEALV---REAAGP--YLESLALFDLYQGPPLPEGHK 741
Query: 769 SFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLR 808
S AF + PK+TL++ + A++ + ++ + LR
Sbjct: 742 SLAFHLRFRHPKRTLRDEEVEEAVSRVAEAL-RARGFGLR 780
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 412 bits (1062), Expect = e-135
Identities = 106/617 (17%), Positives = 220/617 (35%), Gaps = 64/617 (10%)
Query: 103 KKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFNNLKF 162
K+ + + Y + + LC E+ L+++ + ++ N + + +
Sbjct: 7 KRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQG---NVKAAGASDVVLY 63
Query: 163 VIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSG 222
I + NR D L L G+ R + + + ++ + L + +
Sbjct: 64 KIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVA 123
Query: 223 RIIRGIN---PKALTPKWMKIRLEDSGQ---KLVSVLHDITNYVMLELGIPINIFDLSKI 276
++R I + + ++ +L + LV I + + L P
Sbjct: 124 AVLRNIKFTKDRYDSFIELQEKLHQNICRKRALV----AIGTHDLDTLSGPFTYTAKRP- 178
Query: 277 SGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIY 336
++ + N + + I DN L I N V ++ +
Sbjct: 179 -SDIKFKPLNKTKEYTACELMNIYKT-------DNHLKHYLHIIENKPLYPVIYDSNGVV 230
Query: 337 LGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKIS 396
L P I G + + T + + G DF+K L+ + + E C + +
Sbjct: 231 LS----MPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEA 286
Query: 397 ------QIDDQIINIPVRKEIKVRSERVIKILGIKLTNQEISNIFIRLKFHF--IQKNNI 448
++ VR++ + K +GI+ T + ++ + R+ I N
Sbjct: 287 AEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQ 346
Query: 449 FLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLA 508
+ P R D+ DI+E+ YG+ NI ++LP T + + + +RH +A
Sbjct: 347 IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLN-KLTELLRHDMA 405
Query: 509 FADYQEVINYSFIEDSLEKDFSQNI--NNYPIELLNPISKKFNTMRSTLIGSLVNNICYN 566
A + E + ++ D + + NP + +F R+TL+ L+ I N
Sbjct: 406 AAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAAN 465
Query: 567 LKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNID 626
K L ++LFEI+++ + D T G K + + + Y +N
Sbjct: 466 RKMPL-PLKLFEISDIVIKD------SNTDVGAKNYRHLCAVYYN-----------KNPG 507
Query: 627 YFDLKNDLENLF---------FPIKLNFLKINNSILHPNRSALIFKKTKNIGFIGEIHPI 677
+ + L+ + P R A IF + +++G +G +HP
Sbjct: 508 FEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPD 567
Query: 678 LQQKYDLPLAPIFFEVD 694
+ K++L + E++
Sbjct: 568 VITKFELTMPCSSLEIN 584
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1,
phenylalanyl-tRNA SYNT beta subunit, structural
genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas
gingivalis}
Length = 213
Score = 204 bits (521), Expect = 4e-61
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 4/208 (1%)
Query: 491 SPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNT 550
S Y+ + QL A + E++N S S + + +EL+NP+S++ N
Sbjct: 1 SNADRRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNC 60
Query: 551 MRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAY 610
MR TL+ + + +NL+RK + LFE Y + ++ Y E ++ +
Sbjct: 61 MRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWIC 120
Query: 611 GPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN----FLKINNSILHPNRSALIFKKTK 666
G + W F+LK +E + + + LK ++ L+ + + + K
Sbjct: 121 GQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLKTADNDLYASAMEVKTRSGK 180
Query: 667 NIGFIGEIHPILQQKYDLPLAPIFFEVD 694
+G G + L +++++ F E+
Sbjct: 181 LLGTFGTVSTELIKRFEIEQPVYFAELL 208
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural
genomics, midwest center for structural GE protein
structure initiative; HET: MSE; 2.09A {Bacteroides
fragilis}
Length = 213
Score = 200 bits (512), Expect = 8e-60
Identities = 41/208 (19%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 491 SPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKFNT 550
S + + + QL + E++N S + + + LLNP+S N
Sbjct: 1 SNADKSNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNC 60
Query: 551 MRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAVIAY 610
MR TL+ + +I +N RK ++ FE N Y D K+ ++ Y E + +
Sbjct: 61 MRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVT 120
Query: 611 GPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLN----FLKINNSILHPNRSALIFKKTK 666
G ++ W + N ++LK +EN+F + L+ + + ++ + K K
Sbjct: 121 GKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVGNLSDDIYSTALTVNTKGGK 180
Query: 667 NIGFIGEIHPILQQKYDLPLAPIFFEVD 694
+ G + + + +D+ + +++
Sbjct: 181 RLATFGVVTKKMLKAFDVDNEVYYADLN 208
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 161 bits (409), Expect = 5e-44
Identities = 55/317 (17%), Positives = 102/317 (32%), Gaps = 28/317 (8%)
Query: 167 TPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKEILPVKISAIDLCGRFSGRIIR 226
NR D S G+AR+I L ++ N + V D+ I+
Sbjct: 53 DTNRPDLWSAEGVARQIKWALGIEKGLPKYEVKKSNVT--VYVDEKLKDIRPYGVYAIVE 110
Query: 227 GINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELG-----IPINIFDLSKISGELN 281
G+ + +S + + + L G + I IFD KI +
Sbjct: 111 GLR---------------LDEDSLSQMIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIY 155
Query: 282 IRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAF 341
+ E + I + + F + + + V
Sbjct: 156 YKAAEKTEKFAPLGYKEEMTLEEILEKHEKGREYGHLIKDKQFYPLLIDSEGN----VLS 211
Query: 342 WWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTNLIIEICGTSSSKISQIDDQ 401
P + T++ + G K + L + + E G S D
Sbjct: 212 MPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERGGKIRSVRVVYKDF 271
Query: 402 IINIPVR--KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFD 459
I P KE +V + + K+ G++L + EI + ++ + + PA R D
Sbjct: 272 EIETPDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEISRGRAKLKYPAFRDD 331
Query: 460 LEIEEDIIEEIIRIYGF 476
+ DI+E+++ YG+
Sbjct: 332 IMHARDILEDVLIAYGY 348
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 127 bits (322), Expect = 6e-34
Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
+ I + + +G + K ++G + KHPD D
Sbjct: 52 NKATLTGNGHIKLTETLVQAFQKAIEAAGFTYKLDA---DFTPKFVVGYVETKDKHPDAD 108
Query: 61 NFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIK-- 118
++ VD L IVC PN+ G KV A +G+ + +I K +++
Sbjct: 109 KLSVLSVDVATEKLQIVCGAPNVEAGQKVVVAKVGAVM-----PSGMVI---KDAELRGV 160
Query: 119 -SYGLLCSEYDLKINNKNKY--LFELPEDAPIGKNFYD 153
S G++CS +L + N + + L +D +G++F++
Sbjct: 161 ASSGMICSMKELGLPNAPQEKGIMVLSDDYTVGQSFFE 198
>2e8g_A Hypothetical protein PH0536;
oligonucleotide/oligosaccharide-binding fold,
alpha-helices bundle, structural genomics, NPPSFA; 1.70A
{Pyrococcus horikoshii}
Length = 241
Score = 113 bits (283), Expect = 3e-28
Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 17/151 (11%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSK--IIIGKIINIIKHPD 58
+ R + +++ ++ K+ I++G+++++ KHP
Sbjct: 92 LSQASREDREKVEEQVARIKFFLNTILNLDRRLKLGKINDPVIAVDIVVGEVMSVGKHPS 151
Query: 59 IDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIK 118
D + V+ + + +V N ++ G +V A++ + I
Sbjct: 152 ADRLLVTNVNIGERAVTVVTNDLTVKEGNRVAVALLPPR---------------NFFGIV 196
Query: 119 SYGLLCSEYDLKINNKNKYLFELPEDAPIGK 149
S G+ + + N + LP+ P+
Sbjct: 197 SEGMFLGAGEGVLKNVKGEIGGLPKGIPLEA 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.7 bits (211), Expect = 4e-17
Identities = 113/685 (16%), Positives = 236/685 (34%), Gaps = 166/685 (24%)
Query: 48 GKIINIIKHPDIDNFNICK--VDTYKNIL-----DIVCNIPNIRVGLKVPCAIIGSSLLC 100
I+++ + +DNF+ CK D K+IL D + + G + L
Sbjct: 19 KDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR---LFW--TLL 72
Query: 101 INKK---KSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYK- 156
++ + F+ + + +Y L S I + + + + + + + +
Sbjct: 73 SKQEEMVQKFVEEVLRI----NYKFLMS----PIKTEQR------QPSMMTRMYIEQRDR 118
Query: 157 -FNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNY------KEILPV 209
+N+ + K +R L R+ ++L P + + K +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKL---RQ-ALLELRP----AKNVLI--DGVLGSGKTWV-- 166
Query: 210 KISAIDLC------GRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLE 263
A+D+C + +I W+ ++ +S + ++ +L L
Sbjct: 167 ---ALDVCLSYKVQCKMDFKIF-----------WLNLKNCNSPETVLEMLQK------LL 206
Query: 264 LGIPINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIING 323
I N S S + +R +I ++ L K +N ++ N + + N
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLN---VQNAKAWNA 261
Query: 324 FDAS----VTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTI--KCL 377
F+ S +T T+ V + + + + + S D K++ K L
Sbjct: 262 FNLSCKILLT--TRFK--QVT----DFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYL 311
Query: 378 E-RVTNLIIEICGTSSSKISQIDDQIINIPVRKE--IKVRSERVIKILGIKLTNQEISNI 434
+ R +L E+ T+ ++S I + I + + V +++ I+ L E +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE- 370
Query: 435 FIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPISLPITVSKI---S 491
+ F + V PP I ++ + F+ I + + V+K+ S
Sbjct: 371 ---YRKMFDR----LSVFPP----SAHIPTILLS----LIWFDVIKSDVMVVVNKLHKYS 415
Query: 492 PI-KEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNPISKKF-- 548
+ K+ +S SI + ++ N E +L + +++Y I K F
Sbjct: 416 LVEKQPKESTISI-PSIYLELKVKLEN----EYALHRSI---VDHYNIP------KTFDS 461
Query: 549 -NTMRSTLIGSLVNNICYNLK--RKLERIRLFEIANVYLHDKFIKDSPFTVSGYKELKKI 605
+ + L ++I ++LK ER+ LF V+L +F++ +KI
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLDFRFLE------------QKI 507
Query: 606 AVIAYGPLLEPQWGEENRNID---Y----FDLKNDLENLFFPIKLNFLKINNSILHPNRS 658
N Y D E L I L+FL L ++
Sbjct: 508 --RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKY 564
Query: 659 ALIFK---KTKNIGFIGEIHPILQQ 680
+ + ++ E H +Q+
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 78.7 bits (193), Expect = 4e-15
Identities = 107/658 (16%), Positives = 196/658 (29%), Gaps = 210/658 (31%)
Query: 203 YKEILPVKISAI--DL-C--------GRFSGRIIRGI--NPKALTPK----WMKIRLEDS 245
YK+IL V A + C S I I + A++ W L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLSK 74
Query: 246 GQKLV-----SVLHDITNYVMLELGIPINIFDLSKISGELNIRWGNIGETI----KISND 296
+++V VL NY L +S I E I ++ ND
Sbjct: 75 QEEMVQKFVEEVLRI--NYKFL----------MSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 297 -------------LIIKIDKNIGIISDNFKIISLSGIINGFDASVTLNTKDIYLGVAFWW 343
+K+ + + + K + + G++ G
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGVL-GS------------------- 161
Query: 344 PNSIRGKSNHYNLVTE--SSYRFERGIDF----------SKTIKCLERVTNLIIEICGTS 391
GK+ + + SY+ + +DF + LE + L
Sbjct: 162 -----GKT---WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQI 209
Query: 392 SSKISQIDDQIINIPVRKE-IKVRSERVIK---------IL-GIKLTNQEISNIF-IRLK 439
+ D NI +R I+ R++K +L ++ N + N F + K
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLSCK 267
Query: 440 FHFIQKN-NIFLVIPPAHRFDLEIE-------EDIIEEIIRIYGFENIPISLPITVSKIS 491
+ + + A + ++ D ++ ++ Y + P LP V +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTN 326
Query: 492 PIKEGYQSLF--SIRHQLAFADYQEVINY----SFIEDSLE-----------KD---FSQ 531
P + S+ SIR LA D + +N + IE SL F
Sbjct: 327 PRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 532 NINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIRLFEIAN----VYLHDK 587
+ + P LL S + ++ + + KL + L E + +
Sbjct: 384 SA-HIPTILL-----------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 588 FIKDSPFTVSGYKELKKIAVIAYGPLLE-PQWGEENRNID-YF--------------DLK 631
++ + + L + V Y +D YF +
Sbjct: 432 YL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 632 NDLENLFFPIKLNFL--KINNSILHPNRSALI------FKKTKNIGFIGEIHPILQQKYD 683
+F FL KI + N S I K K +I + P ++
Sbjct: 491 TLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERL-- 544
Query: 684 LPLAPIFFEVDALELQKRQIPNYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKN 741
V+A+ +I + SK+ +++R I L + +F E +
Sbjct: 545 ---------VNAILDFLPKIEENLICSKYTDLLR---------IALMAEDEAIFEEAH 584
Score = 70.3 bits (171), Expect = 2e-12
Identities = 59/410 (14%), Positives = 115/410 (28%), Gaps = 118/410 (28%)
Query: 456 HRFDLEIEE------DII----EEIIRIYGFENIPISLPITVSK-------ISP-IKEGY 497
H D E E DI+ + + + +++ +SK +S G
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 498 QSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPIELLNP--ISKKFNTMRSTL 555
LF QE + F+E+ L ++ ++ E P +++ + R L
Sbjct: 65 LRLFWT-----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 556 IGSLVNNICYNLKR--KLERIR--LFEI---ANVYLH-----------------DKFIKD 591
YN+ R ++R L E+ NV + K
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 592 SPFTVSGYKELKKIAVIAYGPLLEPQW---GEENRNIDYFDLKNDLENLFFPIKLNFLKI 648
F + W N ++ L+ L + I N+
Sbjct: 180 MDFKIF--------------------WLNLKNCNSPETVLEM---LQKLLYQIDPNWTSR 216
Query: 649 NNSILHPNRSALIFKKTKNIGFIGEIHP----ILQQKYDLPLAPIFFEVDALELQKRQIP 704
++ + + + + +L + +A L +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA------WNAFNLSCK--- 267
Query: 705 NYIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLK 764
+ ++F V + +I+L T + + SL KY + +
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPD--------EVKSLLLKYLDCRPQ 316
Query: 765 D--NEKS----FAFRCI---LQDPKKTLKN----------NIINNAINAL 795
D E I ++D T N II +++N L
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Score = 57.9 bits (139), Expect = 1e-08
Identities = 69/478 (14%), Positives = 130/478 (27%), Gaps = 141/478 (29%)
Query: 7 WLRTIINPKLSSNDLANLLTM------SGLETEKIETNIPIFSKIIIGKIINIIKHPDID 60
WL + N L L + + +NI + I ++ ++K
Sbjct: 186 WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-- 242
Query: 61 NFNICKVDTYKN---ILDIVCNIPNIRVGLKVPCAI--------IGSSLLCINKKKSFII 109
Y+N +L V N + C I + L +
Sbjct: 243 ---------YENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 110 NIEKKY-KIKSYGLLCSEYDLKINNKNKYLFELPEDA----P-----IGK---------N 150
+ + LL D + +LP + P I + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRP-------QDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 151 FYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLKLLNTKITLPNYKE--ILP 208
+ + + L +I+ + L +L + + P
Sbjct: 346 NWKHVNCDKLTTIIESS-----------------------LNVLEPAEYRKMFDRLSVFP 382
Query: 209 --VKISAIDLC-------GRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNY 259
I I L ++ ++ +L K K + + I
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--------ESTISIPSIY-- 432
Query: 260 VMLELGIPI-NIFDL-SKISGELNIRWGNIGETIKISNDLIIKIDKN-----IGIISDNF 312
LEL + + N + L I NI S+DLI IG +
Sbjct: 433 --LELKVKLENEYALHRSIVDHYNIPKT------FDSDDLIPPYLDQYFYSHIG---HHL 481
Query: 313 KIISLSGIINGFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSK 372
K I + F + ++L F + K H S +
Sbjct: 482 KNIEHPERMTLF--------RMVFLDFRF-----LEQKIRH------DSTAWNASGSILN 522
Query: 373 TIKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKILGIKLTNQE 430
T++ L+ I + ++ I D +P +E + S+ +L I L ++
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILD---FLPKIEENLICSKYT-DLLRIALMAED 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 3e-05
Identities = 57/320 (17%), Positives = 100/320 (31%), Gaps = 111/320 (34%)
Query: 367 GIDF---SKTIKCL-ERVTNLIIEICGTSSSKISQIDDQIINIPVRKEIKVRSERVIKIL 422
G+D SK + + R N + G S I I +IN PV I E+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFS---ILDI---VINNPVNLTIHFGGEK----- 1680
Query: 423 GIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIYGFENIPIS 482
G + I + + F I +I ++I E Y F +
Sbjct: 1681 G-----KRIRENYSAMIFE---------TIVDGKLKTEKIFKEINEHSTS-YTFRS-EKG 1724
Query: 483 L--------P--ITVSK--ISPIKE---------------G-YQSLFSIRHQLAFADYQE 514
L P + K +K G Y +L S+ ++ E
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 515 VINY--SFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLE 572
V+ Y ++ ++ +D +NY + +NP + ++ + + + ++
Sbjct: 1785 VVFYRGMTMQVAVPRD-ELGRSNYGMIAINP-----GRVAASFSQEALQYVVERVGKRTG 1838
Query: 573 RIRLFEIANVYLHDKFIKDSPFTVSG--YKELKKIAVIAYGPLLEPQWGEENRNIDYFDL 630
L EI N + V Y V A G+ R +D
Sbjct: 1839 W--LVEIVN------------YNVENQQY-------VAA---------GD-LRALD---- 1863
Query: 631 KNDLENLFFPIKLNFLKINN 650
+ N+ LNF+K+
Sbjct: 1864 --TVTNV-----LNFIKLQK 1876
Score = 46.6 bits (110), Expect = 3e-05
Identities = 52/331 (15%), Positives = 104/331 (31%), Gaps = 105/331 (31%)
Query: 480 PISL---PITVSKISPIKEGYQSLFSIRHQL-------------AFADYQE-------VI 516
P++L + + P + F I QL FA E V
Sbjct: 8 PLTLSHGSLEHVLLVP-----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 517 NY-SFIEDSLEKDFSQNINNYPIELLNPISKKFNT--MRS----TLIGSLVNNICYNLKR 569
+ ++ +E + + ++LN +F + L L+ L +
Sbjct: 63 KFLGYVSSLVEP---SKVGQFD-QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 570 KLERIRLFEIANVYLHDKFIK--DSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDY 627
E I+ + A + F K +S + + ++ I +G G+ N DY
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FG-------GQGN-TDDY 169
Query: 628 FDLKNDLENLF---FPIKLNFLKINNSIL-----HPNRSALIFKKTKNIGFIGEIHPILQ 679
F+ +L +L+ + + +K + L + +F + G I L+
Sbjct: 170 FE---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ----GL--NILEWLE 220
Query: 680 QKYDLP------LAPIFFEVDALELQKRQIPNYIQISKF----PNVVRDI---------- 719
+ P PI + + Q+ +Y+ +K P +R
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVI----QLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 720 ----VFI--------FNKNINLQDVMDTMFF 738
V I F ++ + + +FF
Sbjct: 277 LVTAVAIAETDSWESFFVSV--RKAITVLFF 305
Score = 45.4 bits (107), Expect = 7e-05
Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 95/281 (33%)
Query: 68 DTYK-NILDIVCNIPNIRVGLKVPCAIIGSSLLCINKKKSFIINIEKKYKIKS-YGLLCS 125
DTY +ILDIV N P + EK +I+ Y +
Sbjct: 1655 DTYGFSILDIVINNP---------------------VNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 126 EYDLKINNKNKYLF-ELPEDAPIGKNFYDYYKFNNLKFVIKLT----PNRGDCLSLLGIA 180
E + K + +F E+ E + Y F + K ++ T P L+L+ A
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTS-------YTFRSEKGLLSATQFTQP----ALTLMEKA 1742
Query: 181 REISILSNTPLKLLNTKITLPNYK-----------------EILPVKISAIDLCGRFSGR 223
+ L +K +P +++ ++ S +++ + G
Sbjct: 1743 ---------AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVV-FYRGM 1791
Query: 224 IIRGINPK-----------ALTPKWMKIRL-EDSGQKLVSVLHDITNYVMLELGIPINIF 271
++ P+ A+ P + +++ Q +V + T ++ +E +N +
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VE---IVN-Y 1846
Query: 272 DLSK----ISGELNIRWGNIGETIKISNDLIIKIDKNIGII 308
++ +G+L + + N IK+ + I II
Sbjct: 1847 NVENQQYVAAGDLR----ALDTVTNVLN--FIKL-QKIDII 1880
Score = 43.5 bits (102), Expect = 3e-04
Identities = 84/565 (14%), Positives = 149/565 (26%), Gaps = 200/565 (35%)
Query: 280 LNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKIISLSGIINGF-----DASVT-LNTK 333
L + G++ + + + + + F L GF + L K
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQ----LQEQF-NKILPEPTEGFAADDEPTTPAELVGK 63
Query: 334 DIYLG-VAFWWPNSIRGKSNHYNLVTESSYR-FERGIDFSKTIKCLERVTNLIIEICGTS 391
+LG V+ K ++ V FE I L L+ E T
Sbjct: 64 --FLGYVS---SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL--AAKLLQENDTTL 116
Query: 392 SSKISQID-----DQIINIPVRKEIK------VRSE--RVIKILG--------------- 423
I + P K+ V +++ I G
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 424 -------IKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFD----LEIEEDIIEEIIR 472
+ + + L + +F + LE + ++
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKD-- 229
Query: 473 IYGFENIPISLPI-------------TVSKISP--------------------------- 492
Y +IPIS P+ + +P
Sbjct: 230 -Y-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 493 --------IKEGYQSLFSI--RHQLAFADYQEVINYSFIEDSLEKDFSQ-----NINNYP 537
+++ LF I R A+ + S +EDSLE + +I+N
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYP--NTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 538 IELLNPISKKFNT---MRSTLIGSLVNNICYNLKRKLERIRLFEIANVYLHDKFIKDSPF 594
E + K N+ + SLVN +
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNG----------------------AKNLV----- 378
Query: 595 TVSGY--------KELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL 646
VSG L+K + G + I + + K N F P+ F
Sbjct: 379 -VSGPPQSLYGLNLTLRKAKAPS---------GLDQSRIPFSERKLKFSNRFLPVASPF- 427
Query: 647 KINNSILHPNRSALIFK--KTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKRQIP 704
++ +L P S LI K N+ F + D+ + P++ D +L+
Sbjct: 428 --HSHLLVPA-SDLINKDLVKNNVSFNAK---------DIQI-PVYDTFDGSDLRVLS-- 472
Query: 705 NYIQISKFPNVVRDIV-FIFNKNIN 728
++ IV I +
Sbjct: 473 --------GSISERIVDCIIRLPVK 489
Score = 42.0 bits (98), Expect = 9e-04
Identities = 78/436 (17%), Positives = 139/436 (31%), Gaps = 149/436 (34%)
Query: 133 NKNKYLFELPEDAPIGKNFYDYYKFNNLKFVIK--------LTPNRGDCLSLLGIAREIS 184
N + Y EL ++ Y Y + +IK L D + + ++
Sbjct: 165 NTDDYFEEL-------RDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFT--QGLN 214
Query: 185 ILS------NTPLK--LLNTKITLP--------NYKEILPV-KISAIDLCGRFSGRIIRG 227
IL NTP K LL+ I+ P +Y + + +L G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 228 --------INPKALTPKWMKIRLEDSGQKLVSVL-------HDITNYVMLELGIPINIFD 272
I A T W S +K ++VL ++ +P +I +
Sbjct: 275 QGLVTAVAI---AETDSWE--SFFVSVRKAITVLFFIGVRCYEAYP----NTSLPPSILE 325
Query: 273 LSKISGE------LNIRWGNIGETIKISNDLIIKIDKNIGIISDNFKI-ISLSGIINGFD 325
S + E L+I T + + ++K + ++ ISL +NG
Sbjct: 326 DSLENNEGVPSPMLSIS----NLTQE---QVQDYVNKTNSHLPAGKQVEISL---VNGAK 375
Query: 326 ASV-TLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRF-ERGIDFSK---TI------ 374
V + + +Y G+ ++R L +S F ER + FS +
Sbjct: 376 NLVVSGPPQSLY-GLN----LTLRKAKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 375 KCLERVTNLIIE--------------------------ICGTSSSKISQIDDQIINIPVR 408
L ++LI + + S S +I D II +PV+
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 409 --KEIKVRSERVI-----KILGI-KLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDL 460
+ ++ ++ G+ LT++ +R VI L
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR-------------VIVAG---TL 533
Query: 461 EIEEDIIEEIIRIYGF 476
+I D ++ YGF
Sbjct: 534 DINPD--DD----YGF 543
Score = 32.7 bits (74), Expect = 0.60
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 29/104 (27%)
Query: 711 KFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSIS---------LFDKYCGK 761
+D+ +N+ D F + F I I F GK
Sbjct: 1638 TSK-AAQDV---WNR-------ADNHFKDTYG----FSILDIVINNPVNLTIHFGGEKGK 1682
Query: 762 KLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNA 805
++++N + F I+ KT K I IN S F +
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEK---IFKEINEHSTSYT--FRS 1721
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 40.2 bits (94), Expect = 0.003
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 691 FEVDALELQKRQIPNYIQISKFPNVVRDIVF-IFNKNINLQDVMDTMFFEKNNNSNCFII 749
F V + + + + +SK+P V+ DI F + ++N D D + + ++
Sbjct: 307 FCVSNINQKVK----FQPLSKYPAVINDISFWLPSENYAENDFYDLVRTIGGD-----LV 357
Query: 750 QSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLR 808
+ + L DK+ K ++ S +R + ++TL + + AL + + + R
Sbjct: 358 EKVDLIDKFVHPK--THKTSHCYRITYRHMERTLSQREVRHIHQALQEAAVQLLGVEGR 414
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.15
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 29/58 (50%)
Query: 739 EKNNNSNCFIIQSISLFDKYCGKKLKDNEKSFAFRCILQDPKKTLKNNIINNAINALI 796
EK Q++ KKL+ + K +A D L AI A +
Sbjct: 18 EK---------QAL--------KKLQASLKLYA-----DDSAPAL-------AIKATM 46
Score = 31.1 bits (69), Expect = 0.66
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 14/35 (40%)
Query: 112 EKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAP 146
EK+ +K L + LK L+ + AP
Sbjct: 18 EKQ-ALKK---L--QASLK-------LYA-DDSAP 38
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 30.9 bits (70), Expect = 0.92
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 36 ETNIPIFSK--IIIGKIINIIKHPDIDNFNICKVD 68
E I S+ I +GKII + KHPD D+ + K+D
Sbjct: 1 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKID 35
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
10395N, triphosphohydro PSI-2, protein structure
initiative; 1.95A {Leeuwenhoekiella blandensis}
Length = 444
Score = 31.2 bits (71), Expect = 1.4
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 516 INYSFIEDSLEKDFSQNINNYPIELLNPISKKFNTMRSTLIGSLVNNICYNLKRKLERIR 575
I + + + K Q I+ L S + + +R+ IG+L+N + E I
Sbjct: 271 IPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTFMKYEEEIL 330
Query: 576 LFEIANVYLHDKFIKDSPFTVSGYKELKKIAV 607
A + I S + ++ +++
Sbjct: 331 ----AGTFDQS-LIDKSNYQAQ-ITDIINLSI 356
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
deoxyguanosinetriphosphate triphsphohydrolase,
pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
syringae PV}
Length = 451
Score = 31.2 bits (71), Expect = 1.7
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 516 INYSFIEDSLEKDFSQNINNYPIEL--LNPISKKFNTMRSTLIGSLVNNICYNLKRKLER 573
++Y+ +E L ++ +L + +K +R I L N + +
Sbjct: 261 LDYAEVESLLLGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQDA 320
Query: 574 IRLFEIANVYLHDKFIKDSPFTVSGYKELKKIAV 607
+ +A D K +A
Sbjct: 321 L----LAGTLPGDLVEHMHGPAKRCVLNAKDMAR 350
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 29.7 bits (67), Expect = 4.1
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 463 EEDIIEEIIRIYGFENIPISLPITVSKISPIKEGY--QSLFS 502
E ++EI+++ G + + + + + I+E + Q+ +
Sbjct: 460 REAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYH 501
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 28.9 bits (65), Expect = 4.7
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 42 FSK--IIIGKIINIIKHPDIDNFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAIIGSSL 98
S+ + IG II KHPD D+ + +VD +V + V + +
Sbjct: 3 VSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGL----VNHVPLEQMQNRMV 58
Query: 99 LCI-NKKKSFIINIEKKYKIKSYG-LLCSEYDLKINNKNKYLFELPEDAPIG 148
+ + N K + K + S ++C+ KI + P + G
Sbjct: 59 ILLCNLKPA------KMRGVLSQAMVMCASSPEKI-----EILAPPNGSVPG 99
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 29.3 bits (66), Expect = 6.5
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 463 EEDIIEEIIRIYGFENIPISLPITVSKISPIKEGYQSLFSIRHQLAFADY 512
+E ++EI+RI G + +P + ++E Y L Q AF +
Sbjct: 468 KESELQEIVRIVGPDALPERERAILLVARMLREDY--L----QQDAFDEV 511
>3fxa_A SIS domain protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Length = 201
Score = 28.7 bits (65), Expect = 6.5
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 374 IKCLERVTNLIIEICGTSSSKISQIDDQIINIPVRKE 410
I + + +I + S I++ D + V KE
Sbjct: 112 IPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKE 148
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 8.8
Identities = 14/106 (13%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 667 NIGFIGEIH--PILQQKYDLP-----LAPIFFEVDALELQKRQIPN--YIQIS------- 710
++G +++ +++ + P+ V LEL + ++ I+
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENI 174
Query: 711 --KFPNVVRDIVFIFNKNINLQDVMDTMFFEK----NNNSNCFIIQ 750
+ P +I+F N +++ + +K + S + +Q
Sbjct: 175 AIELPP--NEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQ 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.412
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,498,872
Number of extensions: 796057
Number of successful extensions: 1788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1707
Number of HSP's successfully gapped: 47
Length of query: 809
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 708
Effective length of database: 3,881,772
Effective search space: 2748294576
Effective search space used: 2748294576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)