RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9573
(809 letters)
>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 209
Score = 134 bits (338), Expect = 2e-36
Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 5/187 (2%)
Query: 207 LPVKISAIDLCGRFSGRIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLELGI 266
+K+ + F+ G+ +P WM+ L +G + ++ + D+TNYVMLE
Sbjct: 10 FALKVEDPEGAPHFTLGYAFGLRVAP-SPLWMQRALFAAGMRPINNVVDVTNYVMLERAQ 68
Query: 267 PINIFDLSKISGELNIRWGNIGETIKISNDLIIKIDKNIGIISDNF----KIISLSGIIN 322
P++ FDL + + +R GE +K + + + +I+ + L+G++
Sbjct: 69 PMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDLVIAGWRGEESFPLGLAGVMG 128
Query: 323 GFDASVTLNTKDIYLGVAFWWPNSIRGKSNHYNLVTESSYRFERGIDFSKTIKCLERVTN 382
G ++ V +T+ I L VA + P SIR + + L TE+S+RFERG+D + R +
Sbjct: 129 GAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDPLGQVPAQRRALS 188
Query: 383 LIIEICG 389
L+ + G
Sbjct: 189 LLQALAG 195
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
subunit, PheT, central domain {Thermus thermophilus
[TaxId: 274]}
Length = 207
Score = 94.6 bits (234), Expect = 1e-22
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 24/226 (10%)
Query: 479 IPISLPITVSKISPIKEGYQSLFSIRHQLAFADYQEVINYSFIEDSLEKDFSQNINNYPI 538
+P P + ++ Y+ +R L+ +QEV YSF++ + F + +
Sbjct: 2 LPAFFPAPDN--RGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPP--RL 57
Query: 539 ELLNPISKKFNTMRSTLIGSLVNNICYNLKRKL-ERIRLFEIANVYLHDKFIKDSPFTVS 597
LLNP++ + +R+ L LV + NL ER LFE+ V+ + +
Sbjct: 58 LLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFG 117
Query: 598 GYKELKKIAVIAYGPLLEPQWGEENRNIDYFDLKNDLENLFFPIKLNFL--KINNSILHP 655
+ R YF LK LE LF + L F LHP
Sbjct: 118 EGV---------------GLPWAKERLSGYFLLKGYLEALFARLGLAFRVEAQAFPFLHP 162
Query: 656 NRSALIFKKTKNIGFIGEIHPILQQKYDLPLAPIFFEVDALELQKR 701
S + + + +GF+G +HP + Q+ +LP FE+ L L +
Sbjct: 163 GVSGRVLVEGEEVGFLGALHPEIAQELELP-PVHLFELR-LPLPDK 206
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 113
Score = 86.5 bits (214), Expect = 6e-21
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 40 PIFSKIIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIGSSLL 99
PI ++ +++ P +D + + ++V N R G+ V A+ G+ L
Sbjct: 2 PIPRGVVFARVLEAHPIPG-TRLKRLVLDAGRTV-EVVSGAENARKGIGVALALPGTELP 59
Query: 100 CINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDA-PIGKNFYDYY 155
+ + ++S+G+ S +L + L E PEDA P G + +
Sbjct: 60 GLG----QKVGERVIQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAW 112
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus
thermophilus [TaxId: 274]}
Length = 104
Score = 77.1 bits (190), Expect = 1e-17
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 706 YIQISKFPNVVRDIVFIFNKNINLQDVMDTMFFEKNNNSNCFIIQSISLFDKYCGKKLKD 765
+ S+ P RD+ + +V + + ++S++LFD Y G L +
Sbjct: 3 FQDPSRHPAAFRDLAVVVPAPTPYGEVEALVR-----EAAGPYLESLALFDLYQGPPLPE 57
Query: 766 NEKSFAFRCILQDPKKTLKNNIINNAINALINSVCKNFNAKLR 808
KS AF + PK+TL++ + A++ + ++ + LR
Sbjct: 58 GHKSLAFHLRFRHPKRTLRDEEVEEAVSRVAEAL-RARGFGLR 99
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT
{Thermus thermophilus [TaxId: 274]}
Length = 75
Score = 74.9 bits (184), Expect = 3e-17
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 409 KEIKVRSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIE 468
+ I R E ++LG E I RL + + V PP+HR DL +EED++E
Sbjct: 3 EAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVE 62
Query: 469 EIIRIYGFENIPI 481
E+ RI G+E IP+
Sbjct: 63 EVARIQGYETIPL 75
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 71.9 bits (176), Expect = 3e-15
Identities = 22/158 (13%), Positives = 43/158 (27%), Gaps = 28/158 (17%)
Query: 42 FSK--IIIGKIINIIKHPDIDNFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAIIGSSL 98
S+ + IG II KHPD D+ + +VD +V + N ++ ++
Sbjct: 3 VSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLC 62
Query: 99 LCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDYYKFN 158
K + S ++ + + P + G
Sbjct: 63 NLKPA---------KMRGVLSQAMVMCASS----PEKIEILAPPNGSVPGDRITFDAFPG 109
Query: 159 NLKFVIK------------LTPNRGDCLSLLGIAREIS 184
+ L N + G+ E+
Sbjct: 110 EPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVK 147
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 71.2 bits (174), Expect = 6e-15
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 16/174 (9%)
Query: 36 ETNIPIFSKIIIGKIINIIKHPDIDNFNICKVDT-YKNILDIVCNIPNIRVGLKVPCAII 94
E IP I +GKII + KHPD D+ + K+D +V + ++ ++
Sbjct: 2 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLV 61
Query: 95 GSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFYDY 154
+ +K ++S G+L IN + + P + G++ +
Sbjct: 62 V---------VLCNLKPQKMRGVESQGMLLCASIEGINRQV-EPLDPPAGSAPGEHVF-V 110
Query: 155 YKFNNLKFVIKLTPNR---GDCLSLLGIARE-ISILSNTPLKLLNTKITLPNYK 204
+ + +L P + + I+ E I+ T I+ + K
Sbjct: 111 KGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLK 164
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 55.3 bits (133), Expect = 4e-10
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 38 NIPIFSK--IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIG 95
F+K + +GKII + HP+ D + KVD + +V + ++ +
Sbjct: 4 KFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVV 63
Query: 96 SSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIG 148
N + + I S G+L + D + L ++ +G
Sbjct: 64 V---VANLEPKKL------RGIGSQGMLLAADD----GERVALLMPDKEVKLG 103
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta,
PheT {Thermus thermophilus [TaxId: 274]}
Length = 77
Score = 46.5 bits (110), Expect = 2e-07
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 146 PIGKNFYDYYKFNNLKFVIKLTPNRGDCLSLLGIAREISILSNTPLK 192
+G + + +++TPNR D L LLG+AR++ L ++
Sbjct: 27 GLGFETDRIERVEEVVLDLEVTPNRPDALGLLGLARDLHALGYALVE 73
Score = 40.0 bits (93), Expect = 5e-05
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 1 MQIPENWLRTIINPKLSSNDLANLLTMSGLETEKIETNIPIFSKI 45
M++P +WL+ + S L L G ET++IE + +
Sbjct: 1 MRVPFSWLKAYVPELESPEVLEERLAGLGFETDRIERVEEVVLDL 45
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 45.3 bits (107), Expect = 1e-06
Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 36 ETNIPIFSK--IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAI 93
F++ + +GKI+ + +H + D I +VD + L V ++ +
Sbjct: 3 TVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYY----SEEEL 58
Query: 94 IGSSLLCINKKKSFIINIEKKYKIK---SYGLLCSEYDLKINNKNKYLFELPEDAPIG 148
+G K + N++K K++ S +L + L P G
Sbjct: 59 MG-------KTVVVLCNLQKA-KMRGETSECMLLCAETD--DGSESVLLTPERMMPAG 106
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 41.9 bits (98), Expect = 3e-05
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 19/115 (16%)
Query: 38 NIPIFSK--IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAIIG 95
I F K + + K+++ + + + +V I P ++G
Sbjct: 4 GIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYY----TPEELVG 59
Query: 96 SSLLCINKKKSFIINIEKK--YKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIG 148
KK + N++ + + I+S G++ + D +N + D G
Sbjct: 60 -------KKIVIVANLKPRKIFGIESQGMILAASD----GENLSVIVPDRDVKEG 103
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 40.8 bits (95), Expect = 6e-05
Identities = 14/118 (11%), Positives = 32/118 (27%), Gaps = 12/118 (10%)
Query: 37 TNIPIFSK--IIIGKIINIIKHPDIDNFNICKVDTYKNILDIVCNIPNIRVGLKVPCAII 94
T + F + +G+++ H + + L P ++
Sbjct: 2 TPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQS--SAQITELYRPEDLV 59
Query: 95 GSSLLCINKKKSFIINIEKKYKIKSYGLLCSEYDLKINNKNKYLFELPEDAPIGKNFY 152
G ++C + + S L+ D L + P+G +
Sbjct: 60 GRLVVCAVNLGAKRV-----AGFLSEVLVLGVPD---EAGRVVLLAPDREVPLGGKVF 109
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 29.7 bits (67), Expect = 1.2
Identities = 11/111 (9%), Positives = 28/111 (25%), Gaps = 9/111 (8%)
Query: 367 GIDF-SKTIKCL-ERVTNLIIEICGTSSSKISQIDDQIINIP-VRKEIKVRSERVIKILG 423
GID + T + + + + NI ++ + +
Sbjct: 5 GIDIGNATTEVALASDYPQARAFVASGIVATTGMKGTRDNIAGTLAALE----QALAKTP 60
Query: 424 IKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAHRFDLEIEEDIIEEIIRIY 474
+ ++S I++ I + + + I R
Sbjct: 61 WSM--SDVSRIYLNEAAPVIGDVAMETITETIQSRVIPAGNLYISGEKRRG 109
>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId:
9606]}
Length = 118
Score = 28.4 bits (63), Expect = 1.2
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 581 NVYLHDKFIKDSPFTVSGYKELKKIAVIAYGPLLEP 616
+V + SP+TV V A+GP LE
Sbjct: 1 DVTYDGHPVPGSPYTVEASLPPDPSKVKAHGPGLEG 36
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas
palustris [TaxId: 1076]}
Length = 114
Score = 26.4 bits (58), Expect = 7.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 223 RIIRGINPKALTPKWMKIRLEDSGQKLVSVLHDITNYVMLEL 264
+ G +P A+ P + + D + +LH + V+LEL
Sbjct: 67 HALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILEL 108
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 406
Score = 27.2 bits (58), Expect = 8.3
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 585 HDKFIKDSPFTVSGYKELKKIAVIAYGPLLEPQWGEENRNIDYFDL 630
HD P G +K+ +I L+ RN D DL
Sbjct: 355 HDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLDSPGRLRNFDIIDL 400
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 26.9 bits (58), Expect = 8.5
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 414 RSERVIKILGIKLTNQEISNIFIRLKFHFIQKNNIFLVIPPAH 456
++ +++I + E +F + F + I PA
Sbjct: 26 ATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAA 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.412
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,178,144
Number of extensions: 166031
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 28
Length of query: 809
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 716
Effective length of database: 1,130,706
Effective search space: 809585496
Effective search space used: 809585496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)