BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9574
(783 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/609 (51%), Positives = 427/609 (70%), Gaps = 1/609 (0%)
Query: 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIII 60
M I + + + + ++ +DVA I LAK I G++NG LVD +I++D L II
Sbjct: 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII 60
Query: 61 TEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILI 120
T KD GL IIRHS AHLL +A+K L+P +++AIGPVI+NGFYYD R+ T+ED+ +
Sbjct: 61 TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEAL 120
Query: 121 EKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINL-IPNNQEISLYSIGSFVD 179
EK+M EL++KN +KK ++ +A F + E +K I++ I ++ + LY +VD
Sbjct: 121 EKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVD 180
Query: 180 LCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAE 239
+CRGPHV + FKL+K AG+YW+G+ NK LQRIYGTAW+ KK YL ++EA
Sbjct: 181 MCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAA 240
Query: 240 KRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLD 299
KRDHRK+GKQL+L+H QEE+PG++FWH G+ I +E++ ++R K Y+E+K P M+D
Sbjct: 241 KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMD 300
Query: 300 LSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQ 359
LW+KTGHW+NYKD MFTT SENR Y +KPMNCPGH+QI+N SYRDLPLR EFG
Sbjct: 301 RVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGS 360
Query: 360 CHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKL 419
CHRNE SGSLHG+MR R F QDD HIFCT+ QI++E+ LV+ +Y+ FGF+KI +KL
Sbjct: 361 CHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKL 420
Query: 420 ALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQC 479
+ RP KRIG + +WD AE L A+ + + +E GEGAFYGPKIE+ L D + R+WQC
Sbjct: 421 STRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQC 480
Query: 480 GTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPI 539
GT+Q+DFS+P RL A Y+ E+N RK PVM+HRAI+GS+ERFI IL E ++G P WLAP+
Sbjct: 481 GTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPV 540
Query: 540 QVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKE 599
QV+I+NI+ Q EY ++ L + RV+ DLRNEKI +KIR H+L ++PY+++ G+KE
Sbjct: 541 QVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKE 600
Query: 600 LCENKITER 608
+ K+ R
Sbjct: 601 VESGKVAVR 609
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/616 (40%), Positives = 386/616 (62%), Gaps = 10/616 (1%)
Query: 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61
I+IQ + K F K T D+A IS L K A+ GK NG LVDL+ ++ D ++ I+T
Sbjct: 4 INIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVT 63
Query: 62 EKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIE 121
L ++RHSTAHL+A+A+K L+ + + +GPVIE GFYYDF ++ + +D IE
Sbjct: 64 PGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIE 123
Query: 122 KKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLC 181
K M ++ +N +K ++RD+A F N+++K ++I+ IP ++ ++LYS G F DLC
Sbjct: 124 KTMKQIVNENMKIERKVVSRDEAKELFS--NDEYKLELIDAIPEDENVTLYSQGDFTDLC 181
Query: 182 RGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKR 241
RG HV ST K+K FKL+ AG+YW+G+ NK LQRIYGTA+ KK+ + +L M++E ++R
Sbjct: 182 RGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKER 241
Query: 242 DHRKLGKQLNLF-HFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
DHRK+GK+L LF + Q GL W P G I +EI++Y+ GY + TP + ++
Sbjct: 242 DHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANV 301
Query: 301 SLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFG 358
L+K +GHW++Y+++MF E L+PMNCP H+ IY + HSYR+LP+R E G
Sbjct: 302 DLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELG 361
Query: 359 QCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIK 418
HR E+SG++ G+ R R +D HIF QIK E ++ VY +FGF+ +
Sbjct: 362 TMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR 421
Query: 419 LALRP----NKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIG 474
L+ R K ++++W+ AEN L+EA G+++EE GE AFYGPK++ +K ++G
Sbjct: 422 LSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMG 481
Query: 475 RSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPL 534
+ T Q+DF +P R YI ++ PV++HR ++ ++ERF+A L E GA P
Sbjct: 482 KEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPT 541
Query: 535 WLAPIQVMILNISKE-QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYII 593
WLAP QV I+ ++ + +YA+++ + LKS+ RV +D RNEK+ YKIR ++K+PY I
Sbjct: 542 WLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQI 601
Query: 594 IVGNKELCENKITERE 609
+VG+KE+ N++ R+
Sbjct: 602 VVGDKEVENNQVNVRQ 617
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 205/368 (55%), Positives = 273/368 (74%)
Query: 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
RDHRK+GKQL+L+H QEE+PG++FWH G+ I +E++ ++R K Y+E+K P M+D
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 301 SLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQC 360
LW+KTGHW+NYKD MFTT SENR Y +KPMNCPGH+QI+N SYRDLPLR EFG C
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 361 HRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLA 420
HRNE SGSLHG+MR R F QDD HIFCT+ QI++E+ LV+ +Y+ FGF+KI +KL+
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 421 LRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480
RP KRIG + +WD AE L A+ + + +E GEGAFYGPKIE+ L D + R+WQCG
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQ 540
T+Q+DFS+P RL A Y+ E+N RK PVM+HRAI+GS+ERFI IL E ++G P WLAP+Q
Sbjct: 241 TVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQ 300
Query: 541 VMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKEL 600
V+I+NI+ Q EY ++ L + RV+ DLRNEKI +KIR H+L ++PY+++ G+KE+
Sbjct: 301 VVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEV 360
Query: 601 CENKITER 608
K+ R
Sbjct: 361 ESGKVAVR 368
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 236/394 (59%), Gaps = 30/394 (7%)
Query: 246 LGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYN-GYKEIKTPQMLDLSLWK 304
+ ++ +LF SPG +F+ P G I ++ ++M+ K+ G+ E+ TP + +LW+
Sbjct: 40 VSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE 99
Query: 305 KTGHWENYKDNMF---TTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCH 361
K+GHWENY D+MF TT E Y LKPMNCPGH I+ SY +LPLRF +F H
Sbjct: 100 KSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLH 159
Query: 362 RNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNE-FGFKKIK---- 416
RNE+SG+L G+ R R F QDDGHIFCT SQ+K+EI +L+ VYN+ F F K
Sbjct: 160 RNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAE 219
Query: 417 ----IKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDS 472
I + RP+ IG+ +W+ AE L+E + SG W+ PG+GAFYGPK++ + D
Sbjct: 220 SNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDH 279
Query: 473 IGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAM 532
+ ++ Q TIQ+DF +P R ++ ++N+ K P+M+HRA GS+ERF+A+L+++ G
Sbjct: 280 LRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGRW 339
Query: 533 PLWLAPIQVMILNISKEQIE-------YAKKVFNFLKSKK----------FRVEVDLRNE 575
P WL P Q +I+ ++ + ++ KK+ N L++ F V++D+RNE
Sbjct: 340 PFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNE 399
Query: 576 KIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609
+ Y+I+ L+ Y+IIVG++E+ K RE
Sbjct: 400 PVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRE 433
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 193 bits (490), Expect = 3e-49, Method: Composition-based stats.
Identities = 100/224 (44%), Positives = 145/224 (64%), Gaps = 1/224 (0%)
Query: 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIII 60
M I + + + + ++ +DVA I LAK I G++NG LVD +I++D L II
Sbjct: 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII 60
Query: 61 TEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILI 120
T KD GL IIRHS AHLL +A+K L+P +++AIGPVI+NGFYYD R+ T+ED+ +
Sbjct: 61 TAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEAL 120
Query: 121 EKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINL-IPNNQEISLYSIGSFVD 179
EK+M EL++KN +KK ++ +A F + E +K I++ I ++ + LY +VD
Sbjct: 121 EKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVD 180
Query: 180 LCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWS 223
+CRGPHV + FKL+K AG+YW+G+ NK LQRIYGTAW+
Sbjct: 181 MCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 202/389 (51%), Gaps = 33/389 (8%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK 320
G+ + G I + + + K + GY ++TP + L+K +GH E Y++NM+
Sbjct: 40 GVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFD 99
Query: 321 SENRFYALKPMNCPGHIQIYNSNFHSYRD---LPLRFGEFGQCHRNESSGSLHGMMRTRS 377
E +A+KPMNCP HI ++ + +R LP + EFG+ HR E SGS++G++R R
Sbjct: 100 IEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRG 159
Query: 378 FIQDDGHIFCTKSQIKNEIV-VFNELVHKVYNEFGFK------KIKIKLALRPNKRIGEN 430
F QDD HI ++ + + VF E+ K+ E FK K++L++ IG+
Sbjct: 160 FTQDDAHIIVPGGRVIDVVYDVFEEM--KLVLERLFKLGVSSETFKVRLSMSDKSLIGKE 217
Query: 431 NI-----WDLAENSLREAIS----SSGVTWEEFPGEGAFYGPKIEYHL---KDSIGRSWQ 478
+ W+ AE +LREA S G+ E GE AFYGPK+++ + + + + WQ
Sbjct: 218 FMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQ 277
Query: 479 CGTIQIDFSMPHRLGA-EYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLA 537
GTIQ DF++P R + + E + ++HRA++GS+ERF+ + +E+ G MP LA
Sbjct: 278 MGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRRGRMPFTLA 337
Query: 538 PIQVMIL------NISKEQIEYAKKVFNFLKSKKFRVEVDLRNEK-IAYKIR-LHSLEKL 589
PIQ ++ + +E + A + L K FRV V ++ ++ +R + S K
Sbjct: 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKP 397
Query: 590 PYIIIVGNKELCENKITEREIIIDRPKHR 618
+ +G KE+ E + R ++ K R
Sbjct: 398 AVNVFIGAKEVREKVLDVRVFDLESMKRR 426
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 196/387 (50%), Gaps = 29/387 (7%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK 320
G+ + G I + + + K + GY ++TP + L+K +GH E Y++N +
Sbjct: 40 GVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNXYLFD 99
Query: 321 SENRFYALKPMNCPGHIQIYNSNFHSYRD---LPLRFGEFGQCHRNESSGSLHGMMRTRS 377
E +A+KP NCP HI ++ + +R LP + EFG+ HR E SGS++G++R R
Sbjct: 100 IEGHEFAVKPXNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRG 159
Query: 378 FIQDDGHIFCTKSQIKNEIV-VFNE--LVHKVYNEFGF--KKIKIKLALRPNKRIGEN-- 430
F QDD HI ++ + + VF E LV + + G + K++L+ IG+
Sbjct: 160 FTQDDAHIIVPGGRVIDVVYDVFEEXKLVLERLFKLGVSSETFKVRLSXSDKSLIGKEFX 219
Query: 431 ---NIWDLAENSLREAIS----SSGVTWEEFPGEGAFYGPKIEYHL---KDSIGRSWQCG 480
W+ AE +LREA S G+ E GE AFYGPK+++ + + + WQ G
Sbjct: 220 GSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIXXVEESGVSKEWQXG 279
Query: 481 TIQIDFSMPHRLGA-EYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPI 539
TIQ DF++P R + + E + ++HRA++GS+ERF+ + +E+ G P LAPI
Sbjct: 280 TIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRRGRXPFTLAPI 339
Query: 540 QVMIL------NISKEQIEYAKKVFNFLKSKKFRVEVDLRNEK-IAYKIR-LHSLEKLPY 591
Q ++ + +E + A + L K FRV V ++ ++ +R + S K
Sbjct: 340 QFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAV 399
Query: 592 IIIVGNKELCENKITEREIIIDRPKHR 618
+ +G KE+ E + R ++ K R
Sbjct: 400 NVFIGAKEVREKVLDVRVFDLESXKRR 426
>pdb|2IFE|A Chain A, Translation Initiation Factor If3 From Escherichia Coli
Ribosome Binding Domain (Residues 84-180)
Length = 100
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 699 EVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLEL 758
E+KFRP +EGDY +KLR+LIRFLEEGDK KITLRFRGREM+HQ IG VL R+K DL+
Sbjct: 15 EIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQE 74
Query: 759 YSQIEQFP-KIEGRQMIMILSPRKKK 783
+ +E FP KIEGRQMIM+L+P+KK+
Sbjct: 75 LAVVESFPTKIEGRQMIMVLAPKKKQ 100
>pdb|1TIG|A Chain A, Translation Initiation Factor 3 C-Terminal Domain
Length = 94
Score = 95.9 bits (237), Expect = 7e-20, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 66/90 (73%)
Query: 691 KQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLE 750
KQKVI +KEV+ P I E D+N KLRN +FLE+GDKVK T+RF+GR ++H++IG RVL+
Sbjct: 1 KQKVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLD 60
Query: 751 RIKSDLELYSQIEQFPKIEGRQMIMILSPR 780
R+ + +E PK++GR M ++L+P+
Sbjct: 61 RLSEACADIAVVETAPKMDGRNMFLVLAPK 90
>pdb|1I96|V Chain V, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
Length = 89
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 697 IKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDL 756
+K +KFR I+E DY KL ++ RFL+EG KVK+T+ FRGRE++H ++G R+L R+ DL
Sbjct: 2 VKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDL 61
Query: 757 ELYSQIEQFPKIEGRQMIMILSPRK 781
+ + +E P++ GR M M+L+P K
Sbjct: 62 KDLAVVEMKPEMLGRDMNMLLAPVK 86
>pdb|1TIF|A Chain A, Translation Initiation Factor 3 N-terminal Domain
Length = 78
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 619 INREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFK 678
IN +I A E+RL + LGI + ++A +A + N+DLV +AP AKPPV R+MDYGKF+
Sbjct: 7 INEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 66
Query: 679 YREKKKAHEVK 689
+ ++KK E +
Sbjct: 67 FEQQKKEKEAR 77
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 237 EAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQ 296
+AE H+ L L + ++ + G+ + P +L+++K MR+ ++ E+ P
Sbjct: 17 DAEVLSHQIL---LRAGYIRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPA 73
Query: 297 MLDLSLWKKTGHWENYKDNMFTTKSEN-RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFG 355
+L LWK++G +E Y N++ K N R Y L P + ++ +SY+ LPL
Sbjct: 74 LLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLY 133
Query: 356 EFGQCHRNESSGSLHGMMRTRSFIQDDGHIF 386
+ +R+E S G++R R FI DG+ F
Sbjct: 134 QIQTKYRDEKR-SRSGLLRGREFIMKDGYSF 163
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 473 IGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAM 532
IG ++ GT D +GA + EN K+ +M I + R ++ +VE +
Sbjct: 408 IGHIFKLGTRYSD-----AMGATVLDENGREKSVIMGCYGI--GVSRLLSAIVEQNADER 460
Query: 533 ----PLWLAP--IQVMILNISKE-QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHS 585
P +AP + V+ +N+ E Q + +++V + + V VD RNE+ K
Sbjct: 461 GINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADAD 520
Query: 586 LEKLPYIIIVGNK 598
L P I VG K
Sbjct: 521 LIGCPIRITVGKK 533
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/399 (22%), Positives = 159/399 (39%), Gaps = 86/399 (21%)
Query: 229 EIYLHMIKEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNG 288
E YL +I++AE D+ + G I P GY I + I++ + +++K G
Sbjct: 16 EWYLEVIQKAELADYGPVR-------------GTIVVRPYGYAIWENIQQVLDRMFKETG 62
Query: 289 YKEIKTPQMLDLSLWKKTG-HWENYKDNMFTTKSEN-----RFYALKPMNCPGHIQIYNS 342
++ P + +S +K H E + + A++P + +++
Sbjct: 63 HQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122
Query: 343 NFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHI-FCTKSQIKNEIVVFNE 401
S+RDLP ++G R E +RT F+ +GH T+ + + E+
Sbjct: 123 WIRSWRDLPQLLNQWGNVVRWEMR--TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLS 180
Query: 402 LVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFY 461
+ ++ E+ I + L+ K E+F GA Y
Sbjct: 181 IYARLAREYA--AIPVIEGLKTEK--------------------------EKF--AGAVY 210
Query: 462 GPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPV----------MLHR 511
IE +KD G++ Q GT + Y+ EN R + +H
Sbjct: 211 TTTIEALMKD--GKALQAGT------------SHYLGENFARAFDIKFQDRDLQVKYVHT 256
Query: 512 AIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNISKEQ-----IEYAKKVFNFLK 562
G RFI ++ + +P LAPIQV+I+ I K++ +E A+ + L
Sbjct: 257 TSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALL 316
Query: 563 SKKFRVEVDLRNEKI-AYKIRLHSLEKLPYIIIVGNKEL 600
++ RV +D R++ YK L+ +P+ + +G K+L
Sbjct: 317 AQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDL 355
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
Length = 458
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 236 KEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTP 295
KEAE HR + L ++E+ G+ W P G+ +L++I++ +R+ G E+ P
Sbjct: 36 KEAEIVSHRLM---LRAGMLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMP 92
Query: 296 QMLDLSLWKKTGHWENYKDNMFTTKSENRFYAL-KPMNCPGHIQIYNSNFHSYRDLPLRF 354
+ LW+++G ++ Y M ++ L P N +I+ + SY+ LPL
Sbjct: 93 TLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNL 152
Query: 355 GEFGQCHRNESSGSLHGMMRTRSFIQDDGHIF 386
R+E G+MR R F+ D + F
Sbjct: 153 YHIQWKFRDEQRPRF-GVMRGREFLMKDAYSF 183
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 157/362 (43%), Gaps = 64/362 (17%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQML-DLSLWKKTGHWENYKDNMFTT 319
G+ W P G++I + K +R+I + ++E+ P ++ + L K+ H + ++D ++
Sbjct: 62 GMHVWMPHGFMIRKNTLKILRRILDRD-HEEVLFPLLVPEDELAKEAIHVKGFEDEVYWV 120
Query: 320 KSEN-----RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMR 374
R AL+P + ++ S+ DLP+RF + R E+ + ++R
Sbjct: 121 THGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHT-RPLIR 179
Query: 375 TR--SFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNI 432
R + ++ I T S+ + ++ E+ + +N G I + RP
Sbjct: 180 VREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLG---IPYLITRRP--------- 227
Query: 433 WDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRL 492
W++FP G+ Y + + D G++ Q GT+ H L
Sbjct: 228 -----------------PWDKFP--GSEYTVAFDTLMPD--GKTLQIGTV-------HNL 259
Query: 493 GAEYIAENNTR-KTP----VMLHRAIIGSLERFIAILVE---NYSG-AMPLWLAPIQVMI 543
G + + +TP +H+ G +R IA ++ + SG +P +A QV+I
Sbjct: 260 GQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVI 319
Query: 544 LNI-----SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNK 598
+ I ++E +E +++ + L++ FRV +D R+ + K + +P + +G +
Sbjct: 320 VPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPR 379
Query: 599 EL 600
+L
Sbjct: 380 DL 381
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 43/201 (21%)
Query: 436 AENSLREAIS---------------SSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480
AEN ++EAIS S W++FPG A Y + D GR+ Q
Sbjct: 167 AENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPG--AEYTMAFDTIFPD--GRTMQIA 222
Query: 481 TIQIDFSMPHRLGA------EYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGA--- 531
T+ H LG E I E T ++ G +R IA ++ +
Sbjct: 223 TV-------HNLGQNFSKTFEIIFETPTGDKDYA-YQTCYGISDRVIASIIAIHGDEKGL 274
Query: 532 -MPLWLAPIQVMILNI---SKEQI--EYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHS 585
+P +APIQV+I+ + KE I E AK+++ LK K FRV +D R+ + K
Sbjct: 275 ILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWE 333
Query: 586 LEKLPYIIIVGNKELCENKIT 606
++ +P I VG K++ KIT
Sbjct: 334 IKGVPLRIEVGPKDIENKKIT 354
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 155/394 (39%), Gaps = 76/394 (19%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT 319
G + + P G+ + I + + Y G +I P ++ S KK + H + ++ F
Sbjct: 46 GCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWV 105
Query: 320 KS------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMM 373
+ E R AL+P + +++ SY+DLPL+ + R+E+ + ++
Sbjct: 106 EKGGLQPLEERL-ALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNT-KPLI 163
Query: 374 RTRSFIQDDGHIF-CTKSQIKNEIVVFNELVHKVY-NEFGFKKIKIKLALRPNKRIGENN 431
R R ++ H T +++ + +++ ++ +E FK K++
Sbjct: 164 RVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRR------------ 211
Query: 432 IWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHR 491
V W+ FP GA Y + + GR Q I H
Sbjct: 212 -----------------VCWDRFP--GADYSEVSDVVM--PCGRVLQTAGI-------HN 243
Query: 492 LGAEY-----IAENNTRKTPVMLHRAIIGSLERFIAIL--VENYSGA--MPLWLAPIQVM 542
LG + I N V + G R +A + SG +P +API V+
Sbjct: 244 LGQRFSSTFDILYANKANESVHPYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVV 303
Query: 543 ILNI---------SKEQI-EYAKKVFNFLKSK-KFRVEVDLR-NEKIAYKIRLHSLEKLP 590
I+ I S +Q+ ++ + LKSK RV +D ++ + K+ + L+ +P
Sbjct: 304 IIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVP 363
Query: 591 YIIIVGNKELCENKITEREIIIDRPKHRINREII 624
I VG ++L + I++ R + + +I
Sbjct: 364 LRIEVGQRDLANGQC----IVVPRDVGKDQKRVI 393
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 239 EKRDHRKLGKQLNLFHFQEES--PGLIF-----WHPKGYIILQEIKKYMRKIYKYNGYKE 291
E + H ++G++L + F+ + G F W G + + + + ++ GYKE
Sbjct: 137 EPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGW---GARLERALINFXLDLHTKKGYKE 193
Query: 292 IKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLP 351
I P ++ + TG ++++++ + +N Y + P +Y +LP
Sbjct: 194 ICPPHLVKPEILIGTGQLPKFEEDLYKCERDN-LYLIPTAEVP-LTNLYREEILKEENLP 251
Query: 352 LRFGEFGQCHRNESSG---SLHGMMRTRSF 378
+ + C+R E+ + G++R F
Sbjct: 252 IYLTAYTPCYRREAGAYGKDIRGIIRQHQF 281
>pdb|3DSQ|A Chain A, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
pdb|3DSQ|B Chain B, Structure Of Desulfitobacterium Hafniense Pylsc, A
Pyrrolysyl Trna Synthetase
Length = 288
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYK--DNMFTTKSENRFYALKP 330
L E+++ + K G+ ++ TP ++ S K E++ +F + L+P
Sbjct: 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKK---CLRP 129
Query: 331 MNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLH 370
M P ++ D P+R E G C+R ES G+ H
Sbjct: 130 MLAPNLYTLWR-ELERLWDKPIRIFEIGTCYRKESQGAQH 168
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase-Trna(Pyl)
Complex From Desulfitobacterium Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYK--DNMFTTKSENRFYALKP 330
L E+++ + K G+ ++ TP ++ S K E++ +F + L+P
Sbjct: 93 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKK---CLRP 149
Query: 331 MNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLH 370
M P ++ D P+R E G C+R ES G+ H
Sbjct: 150 MLAPNLYTLWR-ELERLWDKPIRIFEIGTCYRKESQGAQH 188
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMN 332
L ++++ + + + G+ EIK+P ++ L ++ G +N + ++ + L+PM
Sbjct: 80 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG-IDNDTELSKQIFRVDKNFCLRPML 138
Query: 333 CPGHIQIYNSNFHSYRDLP--LRFGEFGQCHRNESSGSLH 370
P +YN R LP ++ E G C+R ES G H
Sbjct: 139 AP---NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 175
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMN 332
L ++++ + + + G+ EIK+P ++ L ++ G +N + ++ + L+PM
Sbjct: 80 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG-IDNDTELSKQIFRVDKNFCLRPML 138
Query: 333 CPGHIQIYNSNFHSYRDLP--LRFGEFGQCHRNESSGSLH 370
P +YN R LP ++ E G C+R ES G H
Sbjct: 139 AP---NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 175
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMN 332
L ++++ + + + G+ EIK+P ++ L ++ G +N + ++ + L+PM
Sbjct: 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMG-IDNDTELSKQIFRVDKNFCLRPML 137
Query: 333 CPGHIQIYNSNFHSYRDLP--LRFGEFGQCHRNESSGSLH 370
P +YN R LP ++ E G C+R ES G H
Sbjct: 138 TP---NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 174
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 163 IPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKL 200
+P ++I + +G V C G H STG++ K++K+
Sbjct: 685 VPPGRKIRVVQVGDDVQACGGTHCRSTGEIGXLKILKV 722
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 150 SVNEQFKKKIINLIPNN-QEISLYSIG-SFVDL--CR--------GPHVFSTGKLKIFKL 197
++NE+ +K++I+ IP N + IS YSIG +DL C+ PH + +I L
Sbjct: 51 TLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAML 110
Query: 198 IKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLG 247
+ L GS + + K ++ W L ++ EK D++ LG
Sbjct: 111 L-LLGSARRAGEGEKMIRTRSWPGWEP-------LELV--GEKLDNKTLG 150
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 63 KDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEK 122
K+ +G+ ++ S + Y L PD + E+G DF + T E+L+ +E
Sbjct: 232 KEQLGMTVVAVSDSRGGIYNPDGLDPDEVLKWKR--EHGSVKDFPGATNITNEELLELEV 289
Query: 123 KMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCR 182
++ + E+ +KN KA + N + +++ +E + I F LC
Sbjct: 290 DVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDIL---REKGILQIPDF--LCN 344
Query: 183 GPHVFSTGKLKIFKLIK-LAGSYWKGNQK----NKKLQRIYGTAWSTKKDQEIYLH 233
V + F+ ++ + G YW + +KK+ + + ++T KD+ I++
Sbjct: 345 AGGV----TVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMR 396
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 355 GEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVH----KVYNEF 410
G FGQ H+ E + + G+ I+ G K ++KNEI V N+L H ++Y+ F
Sbjct: 100 GRFGQVHKCEETAT--GLKLAAKIIKTRG--MKDKEEVKNEISVMNQLDHANLIQLYDAF 155
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMN 332
L ++++ + + + G+ EIK+P ++ L ++ G +N + ++ + L+P
Sbjct: 80 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERXG-IDNDTELSKQIFRVDKNFCLRPXL 138
Query: 333 CPGHIQIYNSNFHSYRDLP--LRFGEFGQCHRNESSGSLHGMMRTR-SFIQDDGHIFCTK 389
P +YN R LP ++ E G C+R ES G H T +F Q CT+
Sbjct: 139 AP---NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTXLNFCQXGSG--CTR 193
Query: 390 SQIKNEIVVF 399
+++ I F
Sbjct: 194 ENLESIITDF 203
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNK 598
+ + I+ + + YA K+ N L+ + + D KI +++ + I++G++
Sbjct: 330 LDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQ 389
Query: 599 ELCENKI 605
EL NKI
Sbjct: 390 ELENNKI 396
>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase
Length = 498
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 439 SLREAISSSGVTWEEFPGEGAFYGPKIEYH----LKDSIGRSWQCGTIQIDFSMPHRLGA 494
+L +A+ G+ W+E P G YGP + +D + R G FS P + A
Sbjct: 60 ALLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA 119
Query: 495 EYIAENNTRK 504
++A K
Sbjct: 120 RHVAAGRNPK 129
>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
pdb|3PNY|B Chain B, Structure Of Glutamyl-Trna Synthetase From Mycobacterium
Tuberculosis In Space Group P21
Length = 505
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 439 SLREAISSSGVTWEEFPGEGAFYGPKIEYH----LKDSIGRSWQCGTIQIDFSMPHRLGA 494
+L +A+ G+ W+E P G YGP + +D + R G FS P + A
Sbjct: 75 ALLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA 134
Query: 495 EYIAENNTRK 504
++A K
Sbjct: 135 RHVAAGRNPK 144
>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
pdb|3PNV|B Chain B, V369m Mutant Of Glutamyl-Trna Synthetase From
Mycobacterium Tuberculosis
Length = 505
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 439 SLREAISSSGVTWEEFPGEGAFYGPKIEYH----LKDSIGRSWQCGTIQIDFSMPHRLGA 494
+L +A+ G+ W+E P G YGP + +D + R G FS P + A
Sbjct: 75 ALLDALRWLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA 134
Query: 495 EYIAENNTRK 504
++A K
Sbjct: 135 RHVAAGRNPK 144
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 393 KNEIVVFNEL--VHKVYNEFGFKKIKI 417
KNE++ F+E+ + KVY E G KKI+I
Sbjct: 46 KNELLTFDEMARIAKVYAELGVKKIRI 72
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 393 KNEIVVFNEL--VHKVYNEFGFKKIKI 417
KNE++ F+E+ + KVY E G KKI+I
Sbjct: 46 KNELLTFDEMARIAKVYAELGVKKIRI 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,341,731
Number of Sequences: 62578
Number of extensions: 1023464
Number of successful extensions: 2434
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 43
length of query: 783
length of database: 14,973,337
effective HSP length: 106
effective length of query: 677
effective length of database: 8,340,069
effective search space: 5646226713
effective search space used: 5646226713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)