Query psy9574
Match_columns 783
No_of_seqs 534 out of 4240
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:07:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12444 threonyl-tRNA synthet 100.0 5E-127 1E-131 1123.6 70.3 630 1-654 5-635 (639)
2 PLN02908 threonyl-tRNA synthet 100.0 5E-127 1E-131 1123.7 68.7 627 1-654 51-682 (686)
3 PRK00413 thrS threonyl-tRNA sy 100.0 3E-118 6E-123 1055.7 70.4 631 1-654 1-632 (638)
4 COG0441 ThrS Threonyl-tRNA syn 100.0 5E-118 1E-122 1000.4 51.7 580 35-656 2-582 (589)
5 PLN02837 threonine-tRNA ligase 100.0 3E-116 7E-121 1019.5 60.8 576 53-654 28-608 (614)
6 PRK12305 thrS threonyl-tRNA sy 100.0 2E-111 4E-116 983.9 61.3 566 63-654 1-569 (575)
7 KOG1637|consensus 100.0 8E-110 2E-114 869.4 29.7 548 5-654 4-555 (560)
8 TIGR00418 thrS threonyl-tRNA s 100.0 3E-105 7E-110 930.3 58.9 557 72-652 1-561 (563)
9 PRK14799 thrS threonyl-tRNA sy 100.0 1.2E-98 3E-103 850.8 44.7 484 139-656 46-533 (545)
10 PRK03991 threonyl-tRNA synthet 100.0 4E-72 8.6E-77 643.8 42.8 432 204-671 155-605 (613)
11 cd00771 ThrRS_core Threonyl-tR 100.0 2.8E-65 6.1E-70 546.3 31.3 297 242-538 1-298 (298)
12 PRK12325 prolyl-tRNA synthetas 100.0 1.8E-62 4E-67 550.3 36.2 379 236-651 16-438 (439)
13 PRK08661 prolyl-tRNA synthetas 100.0 2.9E-57 6.4E-62 512.2 35.6 350 242-653 17-386 (477)
14 TIGR00408 proS_fam_I prolyl-tR 100.0 5.2E-57 1.1E-61 509.0 34.5 374 225-687 5-397 (472)
15 PRK04173 glycyl-tRNA synthetas 100.0 8.8E-55 1.9E-59 487.6 30.5 334 259-652 27-454 (456)
16 COG0290 InfC Translation initi 100.0 5.9E-56 1.3E-60 410.4 16.2 170 614-783 7-176 (176)
17 PRK09194 prolyl-tRNA synthetas 100.0 3.3E-54 7.1E-59 498.7 29.4 385 237-651 17-561 (565)
18 TIGR00409 proS_fam_II prolyl-t 100.0 1.4E-52 3.1E-57 480.4 35.9 387 237-652 17-567 (568)
19 COG0124 HisS Histidyl-tRNA syn 100.0 6.8E-51 1.5E-55 444.7 33.5 351 258-652 6-426 (429)
20 CHL00201 syh histidine-tRNA sy 100.0 1.5E-49 3.3E-54 445.7 34.9 352 258-654 6-418 (430)
21 CHL00199 infC translation init 100.0 4.5E-51 9.8E-56 389.9 17.2 169 613-781 12-180 (182)
22 TIGR00168 infC translation ini 100.0 1.3E-49 2.7E-54 380.5 18.2 163 619-781 1-164 (165)
23 PRK00028 infC translation init 100.0 1.6E-49 3.4E-54 384.8 18.3 169 615-783 9-177 (177)
24 PLN02530 histidine-tRNA ligase 100.0 4.8E-44 1E-48 406.6 31.4 329 258-610 72-473 (487)
25 KOG2324|consensus 100.0 7.3E-43 1.6E-47 355.5 27.3 341 244-609 28-408 (457)
26 COG0442 ProS Prolyl-tRNA synth 100.0 6.7E-43 1.5E-47 386.5 27.8 361 236-609 16-480 (500)
27 PRK00037 hisS histidyl-tRNA sy 100.0 3.1E-42 6.8E-47 387.5 32.2 344 257-653 5-410 (412)
28 PRK14894 glycyl-tRNA synthetas 100.0 3.5E-42 7.6E-47 373.0 25.3 349 259-654 29-537 (539)
29 cd00770 SerRS_core Seryl-tRNA 100.0 5.4E-42 1.2E-46 366.0 21.1 267 237-539 15-296 (297)
30 TIGR00442 hisS histidyl-tRNA s 100.0 2.4E-40 5.2E-45 370.3 32.3 332 258-610 2-394 (397)
31 cd00778 ProRS_core_arch_euk Pr 100.0 1.4E-41 3.1E-46 356.7 21.0 245 244-526 7-260 (261)
32 PRK05431 seryl-tRNA synthetase 100.0 1.4E-41 3E-46 377.9 21.7 266 237-540 133-416 (425)
33 TIGR00389 glyS_dimeric glycyl- 100.0 1.2E-40 2.5E-45 373.4 26.7 363 259-652 26-549 (551)
34 PLN02972 Histidyl-tRNA synthet 100.0 1.2E-39 2.6E-44 374.1 33.7 345 257-653 328-759 (763)
35 TIGR00414 serS seryl-tRNA synt 100.0 5.4E-41 1.2E-45 372.4 21.0 269 237-539 136-417 (418)
36 PLN02678 seryl-tRNA synthetase 100.0 1E-40 2.2E-45 367.9 20.7 287 207-540 120-424 (448)
37 PRK12420 histidyl-tRNA synthet 100.0 2.4E-39 5.3E-44 363.7 29.0 325 258-610 6-409 (423)
38 PLN02734 glycyl-tRNA synthetas 100.0 3E-39 6.5E-44 366.3 22.8 365 258-655 97-662 (684)
39 PLN02320 seryl-tRNA synthetase 100.0 4.1E-39 9E-44 355.9 19.5 268 237-540 196-491 (502)
40 COG0423 GRS1 Glycyl-tRNA synth 100.0 1.2E-38 2.6E-43 343.3 22.0 338 259-655 29-552 (558)
41 cd00779 ProRS_core_prok Prolyl 100.0 9.3E-39 2E-43 334.2 18.7 248 240-527 4-255 (255)
42 cd00772 ProRS_core Prolyl-tRNA 100.0 2.1E-37 4.5E-42 324.9 22.9 246 242-527 6-264 (264)
43 KOG1936|consensus 100.0 4.8E-37 1E-41 320.1 22.9 352 258-654 62-515 (518)
44 KOG4163|consensus 100.0 1.6E-37 3.5E-42 322.6 18.9 413 216-718 56-503 (551)
45 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 9.5E-35 2.1E-39 302.1 21.7 229 269-525 1-235 (235)
46 PRK00960 seryl-tRNA synthetase 100.0 1.2E-34 2.6E-39 322.7 18.2 267 241-539 195-503 (517)
47 COG0172 SerS Seryl-tRNA synthe 100.0 3.6E-34 7.7E-39 309.3 18.2 283 208-539 118-418 (429)
48 PRK12292 hisZ ATP phosphoribos 100.0 3.7E-32 8E-37 302.1 27.5 301 258-589 5-378 (391)
49 KOG2509|consensus 100.0 7.4E-32 1.6E-36 284.0 14.8 288 206-539 130-432 (455)
50 PRK12421 ATP phosphoribosyltra 100.0 8E-30 1.7E-34 282.2 26.6 297 258-596 9-382 (392)
51 KOG2298|consensus 100.0 6.3E-31 1.4E-35 276.8 14.0 370 258-653 34-591 (599)
52 TIGR00415 serS_MJ seryl-tRNA s 100.0 1.5E-29 3.1E-34 277.2 25.2 259 241-534 195-498 (520)
53 PF00587 tRNA-synt_2b: tRNA sy 100.0 1.7E-29 3.8E-34 249.7 13.4 152 272-424 1-155 (173)
54 cd00773 HisRS-like_core Class 99.9 9.6E-27 2.1E-31 245.4 22.2 235 270-524 2-260 (261)
55 TIGR00443 hisZ_biosyn_reg ATP 99.9 3.6E-26 7.7E-31 247.1 18.4 238 263-524 1-312 (314)
56 cd00774 GlyRS-like_core Glycyl 99.9 4E-26 8.8E-31 238.8 12.8 182 259-451 21-208 (254)
57 PRK12293 hisZ ATP phosphoribos 99.9 5.4E-25 1.2E-29 232.5 21.0 223 258-525 7-280 (281)
58 PF13393 tRNA-synt_His: Histid 99.9 2E-23 4.3E-28 226.3 18.1 235 261-520 1-311 (311)
59 PF00707 IF3_C: Translation in 99.9 5.4E-24 1.2E-28 184.4 9.2 87 695-781 2-88 (88)
60 PRK12295 hisZ ATP phosphoribos 99.9 2.2E-22 4.8E-27 220.6 19.6 136 273-422 7-145 (373)
61 PF05198 IF3_N: Translation in 99.9 3.1E-23 6.7E-28 172.3 5.0 75 615-689 2-76 (76)
62 COG3705 HisZ ATP phosphoribosy 99.8 1.1E-19 2.5E-24 195.5 17.6 303 257-597 4-380 (390)
63 cd00768 class_II_aaRS-like_cor 99.8 9.4E-18 2E-22 171.0 18.3 208 272-520 1-211 (211)
64 PRK01584 alanyl-tRNA synthetas 99.8 5.1E-18 1.1E-22 192.5 15.8 127 68-202 452-580 (594)
65 cd02426 Pol_gamma_b_Cterm C-te 99.7 3.8E-16 8.2E-21 145.3 12.0 106 525-653 10-125 (128)
66 COG0013 AlaS Alanyl-tRNA synth 99.7 7.8E-16 1.7E-20 179.1 16.5 125 69-202 563-690 (879)
67 TIGR00344 alaS alanine--tRNA l 99.7 1.2E-15 2.6E-20 182.6 17.9 145 50-202 537-683 (851)
68 cd00862 ProRS_anticodon_zinc P 99.7 6.7E-16 1.5E-20 155.7 13.3 99 531-652 3-108 (202)
69 PLN02900 alanyl-tRNA synthetas 99.7 2E-15 4.4E-20 181.0 19.0 155 41-202 562-723 (936)
70 PRK00252 alaS alanyl-tRNA synt 99.6 2.5E-15 5.4E-20 180.7 18.0 144 51-202 531-676 (865)
71 PRK12294 hisZ ATP phosphoribos 99.6 5.4E-15 1.2E-19 154.9 17.3 131 271-421 8-141 (272)
72 TIGR03683 A-tRNA_syn_arch alan 99.6 1E-14 2.2E-19 175.1 20.2 145 51-202 575-722 (902)
73 PRK13902 alaS alanyl-tRNA synt 99.6 1E-14 2.3E-19 174.9 20.1 142 54-202 574-718 (900)
74 cd00858 GlyRS_anticodon GlyRS 99.6 5.3E-15 1.1E-19 137.1 11.3 98 531-652 19-118 (121)
75 PRK14938 Ser-tRNA(Thr) hydrola 99.6 1.2E-14 2.5E-19 155.0 12.9 112 517-651 249-364 (387)
76 PLN02961 alanine-tRNA ligase 99.6 3.4E-14 7.3E-19 145.6 14.6 143 50-201 63-211 (223)
77 PF03129 HGTP_anticodon: Antic 99.6 8.8E-15 1.9E-19 129.4 8.4 90 540-652 1-93 (94)
78 PRK09537 pylS pyrolysyl-tRNA s 99.5 3.5E-13 7.6E-18 147.1 18.6 134 272-418 205-340 (417)
79 cd00861 ProRS_anticodon_short 99.5 5E-14 1.1E-18 124.5 9.4 90 538-650 1-93 (94)
80 PRK07080 hypothetical protein; 99.5 1.2E-12 2.5E-17 136.1 19.2 248 251-534 29-308 (317)
81 TIGR02367 PylS pyrrolysyl-tRNA 99.5 3.6E-13 7.9E-18 146.2 14.5 165 240-417 203-375 (453)
82 COG2872 Predicted metal-depend 99.4 1.7E-12 3.7E-17 131.9 15.6 142 52-201 78-221 (241)
83 KOG0188|consensus 99.4 4.6E-12 9.9E-17 141.4 14.4 139 69-221 567-709 (895)
84 cd00860 ThrRS_anticodon ThrRS 99.4 3.5E-12 7.6E-17 111.8 10.8 73 538-610 1-73 (91)
85 cd00738 HGTP_anticodon HGTP an 99.3 2E-11 4.4E-16 107.6 10.3 73 538-610 1-76 (94)
86 PRK04172 pheS phenylalanyl-tRN 99.2 9.7E-11 2.1E-15 134.0 11.0 145 259-416 222-407 (489)
87 PF02824 TGS: TGS domain; Int 99.1 3.8E-10 8.3E-15 90.4 7.0 60 2-61 1-60 (60)
88 PTZ00326 phenylalanyl-tRNA syn 99.0 9.5E-09 2.1E-13 114.8 17.1 138 269-414 227-412 (494)
89 cd00859 HisRS_anticodon HisRS 98.9 6E-09 1.3E-13 90.7 9.7 71 540-610 3-73 (91)
90 PF07973 tRNA_SAD: Threonyl an 98.8 1.5E-09 3.2E-14 81.0 2.5 43 169-218 1-44 (44)
91 COG0442 ProS Prolyl-tRNA synth 98.6 1.6E-07 3.4E-12 105.6 10.8 213 392-609 110-364 (500)
92 smart00863 tRNA_SAD Threonyl a 98.6 4.7E-08 1E-12 73.2 3.4 38 169-206 1-39 (44)
93 KOG2105|consensus 98.5 3E-07 6.5E-12 92.9 9.2 146 45-203 84-234 (415)
94 cd01667 TGS_ThrRS_N TGS _ThrRS 98.5 2.4E-07 5.3E-12 74.0 7.1 61 2-62 1-61 (61)
95 cd00669 Asp_Lys_Asn_RS_core As 98.5 1E-06 2.2E-11 93.1 12.2 111 271-400 2-115 (269)
96 PRK09350 poxB regulator PoxA; 98.5 2E-07 4.4E-12 100.3 6.7 115 270-400 5-124 (306)
97 PF01409 tRNA-synt_2d: tRNA sy 98.4 6.5E-06 1.4E-10 85.6 16.1 132 270-413 16-157 (247)
98 COG0173 AspS Aspartyl-tRNA syn 98.3 6.8E-07 1.5E-11 99.0 5.1 117 269-409 140-261 (585)
99 KOG1035|consensus 98.2 4.2E-05 9.2E-10 91.9 18.9 309 263-609 925-1326(1351)
100 cd01616 TGS The TGS domain, na 98.2 3E-06 6.6E-11 67.1 6.3 60 2-61 1-60 (60)
101 PRK00488 pheS phenylalanyl-tRN 98.2 0.0001 2.3E-09 79.1 19.4 130 265-410 102-236 (339)
102 COG0016 PheS Phenylalanyl-tRNA 98.1 0.00017 3.6E-09 77.1 19.5 139 259-411 100-244 (335)
103 PF14877 mIF3: Mitochondrial t 98.1 1.3E-05 2.8E-10 77.5 9.3 114 625-738 32-170 (181)
104 PF00152 tRNA-synt_2: tRNA syn 98.1 3.5E-05 7.6E-10 84.5 13.6 118 269-405 21-145 (335)
105 cd00776 AsxRS_core Asx tRNA sy 98.0 2.9E-05 6.4E-10 84.3 10.6 114 269-401 23-138 (322)
106 cd00777 AspRS_core Asp tRNA sy 98.0 3.9E-05 8.4E-10 81.6 10.3 110 271-400 2-115 (280)
107 cd01668 TGS_RelA_SpoT TGS_RelA 98.0 2.4E-05 5.2E-10 62.6 6.7 59 3-61 2-60 (60)
108 cd00496 PheRS_alpha_core Pheny 97.9 0.00021 4.5E-09 73.4 15.1 125 273-411 3-132 (218)
109 PLN02853 Probable phenylalanyl 97.9 0.00035 7.6E-09 78.3 16.6 131 273-413 223-396 (492)
110 cd00775 LysRS_core Lys_tRNA sy 97.9 0.0001 2.2E-09 80.3 11.9 113 270-401 8-123 (329)
111 TIGR00468 pheS phenylalanyl-tR 97.8 0.00029 6.2E-09 75.6 14.8 130 269-413 70-204 (294)
112 TIGR00462 genX lysyl-tRNA synt 97.8 3E-05 6.6E-10 83.5 7.3 112 271-400 2-119 (304)
113 COG2269 Truncated, possibly in 97.8 2.9E-05 6.3E-10 79.4 6.5 128 262-402 4-137 (322)
114 KOG2411|consensus 97.8 5.7E-06 1.2E-10 89.8 1.5 111 269-400 177-293 (628)
115 TIGR00458 aspS_arch aspartyl-t 97.8 0.00013 2.9E-09 82.3 12.2 115 268-400 131-246 (428)
116 PRK06462 asparagine synthetase 97.8 7.7E-05 1.7E-09 81.4 9.9 121 269-400 29-151 (335)
117 PRK00484 lysS lysyl-tRNA synth 97.8 0.00015 3.3E-09 83.0 12.3 114 269-401 171-287 (491)
118 PRK05159 aspC aspartyl-tRNA sy 97.8 0.00015 3.4E-09 82.1 12.0 114 268-400 134-250 (437)
119 TIGR00459 aspS_bact aspartyl-t 97.8 0.00015 3.3E-09 83.9 11.9 113 269-401 137-253 (583)
120 PRK00476 aspS aspartyl-tRNA sy 97.7 0.00017 3.7E-09 84.1 11.7 111 269-400 140-255 (588)
121 PLN02903 aminoacyl-tRNA ligase 97.7 0.00018 4E-09 83.7 11.6 113 269-400 202-318 (652)
122 PTZ00385 lysyl-tRNA synthetase 97.7 0.00022 4.8E-09 82.9 11.3 113 269-400 232-347 (659)
123 PTZ00417 lysine-tRNA ligase; P 97.7 0.00025 5.4E-09 82.1 11.3 113 269-400 252-367 (585)
124 TIGR00499 lysS_bact lysyl-tRNA 97.6 0.00022 4.8E-09 81.7 10.7 114 269-401 171-287 (496)
125 PRK03932 asnC asparaginyl-tRNA 97.6 0.00024 5.2E-09 80.7 10.8 113 268-400 131-254 (450)
126 PLN02502 lysyl-tRNA synthetase 97.6 0.0003 6.4E-09 81.2 11.3 114 269-401 228-344 (553)
127 PRK12445 lysyl-tRNA synthetase 97.6 0.00024 5.2E-09 81.5 10.4 114 269-401 183-299 (505)
128 TIGR00457 asnS asparaginyl-tRN 97.6 0.00026 5.7E-09 80.4 10.1 112 270-400 136-257 (453)
129 PRK12820 bifunctional aspartyl 97.6 0.00031 6.8E-09 82.6 10.8 116 268-401 154-271 (706)
130 PLN02850 aspartate-tRNA ligase 97.5 0.00035 7.6E-09 80.5 10.0 113 269-400 224-339 (530)
131 PTZ00401 aspartyl-tRNA synthet 97.3 0.00083 1.8E-08 77.6 9.4 114 269-400 212-327 (550)
132 PTZ00425 asparagine-tRNA ligas 97.3 0.0021 4.5E-08 74.3 12.4 34 268-301 213-246 (586)
133 PRK02983 lysS lysyl-tRNA synth 97.3 0.00075 1.6E-08 84.1 9.5 113 270-401 770-885 (1094)
134 COG0017 AsnS Aspartyl/asparagi 97.3 0.0014 3.1E-08 72.3 10.3 111 269-398 133-244 (435)
135 PLN02221 asparaginyl-tRNA synt 97.2 0.0021 4.5E-08 74.4 11.6 33 269-301 170-202 (572)
136 TIGR00470 sepS O-phosphoseryl- 97.1 0.023 5E-07 63.0 17.9 87 323-418 180-267 (533)
137 PF12745 HGTP_anticodon2: Anti 97.1 0.004 8.6E-08 65.7 11.2 97 537-656 4-108 (273)
138 PLN02603 asparaginyl-tRNA synt 97.0 0.0036 7.8E-08 72.4 11.4 107 269-394 225-362 (565)
139 PLN02532 asparagine-tRNA synth 97.0 0.0032 6.9E-08 73.2 10.4 33 269-301 234-266 (633)
140 PRK07440 hypothetical protein; 96.9 0.0051 1.1E-07 50.9 8.2 59 1-62 4-66 (70)
141 COG2104 ThiS Sulfur transfer p 96.8 0.0074 1.6E-07 49.4 7.9 59 1-62 2-64 (68)
142 PRK05659 sulfur carrier protei 96.8 0.007 1.5E-07 49.4 7.9 58 2-62 1-62 (66)
143 PRK08364 sulfur carrier protei 96.7 0.006 1.3E-07 50.5 7.0 59 1-62 4-66 (70)
144 KOG0554|consensus 96.6 0.026 5.7E-07 60.7 12.7 106 265-388 127-240 (446)
145 PRK09616 pheT phenylalanyl-tRN 96.3 0.034 7.4E-07 65.1 13.0 132 269-413 357-492 (552)
146 PRK08053 sulfur carrier protei 96.3 0.019 4.2E-07 46.9 7.8 58 2-62 1-62 (66)
147 PRK07696 sulfur carrier protei 96.3 0.018 4E-07 47.1 7.4 58 2-62 1-63 (67)
148 cd00565 ThiS ThiaminS ubiquiti 96.3 0.016 3.4E-07 47.2 6.9 56 4-62 2-61 (65)
149 COG1190 LysU Lysyl-tRNA synthe 96.2 0.017 3.8E-07 64.4 8.6 96 270-384 180-277 (502)
150 PRK06944 sulfur carrier protei 96.1 0.025 5.4E-07 46.0 7.3 57 2-62 1-61 (65)
151 PRK06488 sulfur carrier protei 96.0 0.033 7E-07 45.4 7.3 57 2-62 1-61 (65)
152 PRK11092 bifunctional (p)ppGpp 95.9 0.014 3E-07 69.6 6.9 63 3-65 389-451 (702)
153 KOG1885|consensus 95.8 0.011 2.3E-07 64.7 4.9 96 270-384 225-322 (560)
154 PRK06437 hypothetical protein; 95.8 0.043 9.2E-07 45.0 7.2 52 10-63 13-64 (67)
155 PRK06083 sulfur carrier protei 95.7 0.049 1.1E-06 46.7 7.7 59 1-62 18-80 (84)
156 COG0317 SpoT Guanosine polypho 95.5 0.025 5.4E-07 66.4 6.8 61 4-64 391-451 (701)
157 COG2024 Phenylalanyl-tRNA synt 95.3 0.096 2.1E-06 55.9 9.5 86 325-418 182-267 (536)
158 cd00769 PheRS_beta_core Phenyl 95.1 0.06 1.3E-06 54.4 7.3 128 274-412 3-139 (198)
159 PLN02788 phenylalanine-tRNA sy 95.1 0.59 1.3E-05 52.0 15.5 126 273-412 70-213 (402)
160 PRK10872 relA (p)ppGpp synthet 94.9 0.047 1E-06 65.1 6.6 63 3-65 407-469 (743)
161 TIGR00691 spoT_relA (p)ppGpp s 94.8 0.058 1.3E-06 64.5 7.1 63 3-65 363-425 (683)
162 TIGR01683 thiS thiamine biosyn 94.7 0.13 2.8E-06 41.7 7.0 55 5-62 2-60 (64)
163 PRK05863 sulfur carrier protei 94.2 0.15 3.4E-06 41.4 6.2 58 2-62 1-61 (65)
164 KOG0556|consensus 93.7 0.08 1.7E-06 57.1 4.7 100 271-388 229-329 (533)
165 PRK11840 bifunctional sulfur c 92.8 0.33 7.2E-06 51.9 7.6 58 2-62 1-62 (326)
166 TIGR00471 pheT_arch phenylalan 92.5 0.64 1.4E-05 54.6 10.4 131 270-413 361-494 (551)
167 PLN02799 Molybdopterin synthas 92.4 0.41 8.9E-06 40.8 6.5 53 10-62 21-78 (82)
168 PF14453 ThiS-like: ThiS-like 91.6 0.86 1.9E-05 35.8 6.6 55 2-61 1-55 (57)
169 KOG0555|consensus 91.2 0.42 9.1E-06 51.5 6.2 118 270-408 243-364 (545)
170 PLN02265 probable phenylalanyl 90.5 1.4 3E-05 52.3 10.3 132 271-413 397-531 (597)
171 TIGR00469 pheS_mito phenylalan 90.2 21 0.00046 40.4 18.5 114 265-388 41-166 (460)
172 cd00754 MoaD Ubiquitin domain 89.5 0.81 1.8E-05 38.5 5.5 52 11-62 19-76 (80)
173 KOG2784|consensus 88.4 0.28 6.1E-06 52.3 2.2 137 264-414 210-388 (483)
174 PF02597 ThiS: ThiS family; I 88.0 1.3 2.9E-05 36.8 5.8 53 10-62 14-73 (77)
175 cd01666 TGS_DRG_C TGS_DRG_C: 87.9 0.85 1.9E-05 38.2 4.4 52 10-61 17-75 (75)
176 PRK01777 hypothetical protein; 87.1 2.9 6.3E-05 36.7 7.5 59 11-69 20-83 (95)
177 PRK06253 O-phosphoseryl-tRNA s 85.3 2.3 4.9E-05 48.5 7.3 83 323-413 181-263 (529)
178 cd01669 TGS_Ygr210_C TGS_Ygr21 83.3 2.7 5.8E-05 35.4 5.2 50 11-61 24-76 (76)
179 CHL00192 syfB phenylalanyl-tRN 76.7 10 0.00023 45.9 9.5 128 269-413 396-533 (704)
180 COG0072 PheT Phenylalanyl-tRNA 76.7 6.9 0.00015 46.9 7.8 93 269-366 349-444 (650)
181 PRK11130 moaD molybdopterin sy 76.0 13 0.00029 31.4 7.4 61 1-61 1-76 (81)
182 TIGR00472 pheT_bact phenylalan 75.1 11 0.00023 46.5 9.2 130 274-413 494-632 (798)
183 TIGR01682 moaD molybdopterin c 71.1 11 0.00024 31.7 5.7 51 11-61 19-75 (80)
184 PF14451 Ub-Mut7C: Mut7-C ubiq 69.1 14 0.00029 31.5 5.7 51 11-62 26-76 (81)
185 PRK00629 pheT phenylalanyl-tRN 66.4 7.8 0.00017 47.7 5.3 89 270-363 486-576 (791)
186 TIGR00559 pdxJ pyridoxine 5'-p 65.9 26 0.00057 36.0 8.0 65 517-592 72-148 (237)
187 TIGR01687 moaD_arch MoaD famil 63.2 19 0.0004 30.9 5.6 49 12-61 20-83 (88)
188 PF10752 DUF2533: Protein of u 62.2 14 0.00031 30.9 4.3 39 109-147 42-80 (84)
189 cd04938 TGS_Obg-like TGS_Obg-l 61.8 22 0.00048 29.8 5.6 50 12-61 26-76 (76)
190 PRK05265 pyridoxine 5'-phospha 61.8 31 0.00067 35.6 7.6 65 517-592 75-151 (239)
191 COG1034 NuoG NADH dehydrogenas 61.8 30 0.00065 41.5 8.7 76 1-80 1-92 (693)
192 cd00003 PNPsynthase Pyridoxine 61.3 32 0.00069 35.3 7.6 65 517-592 72-148 (234)
193 PF03740 PdxJ: Pyridoxal phosp 61.2 36 0.00079 35.1 8.0 65 517-592 73-149 (239)
194 PRK13902 alaS alanyl-tRNA synt 59.3 9.6 0.00021 47.3 4.2 116 273-414 61-181 (900)
195 TIGR03683 A-tRNA_syn_arch alan 59.2 14 0.0003 46.0 5.5 116 273-417 58-180 (902)
196 COG2875 CobM Precorrin-4 methy 57.0 91 0.002 32.0 9.8 84 375-471 43-130 (254)
197 COG1854 LuxS LuxS protein invo 56.1 47 0.001 31.6 7.2 58 71-129 52-112 (161)
198 PTZ00305 NADH:ubiquinone oxido 53.3 84 0.0018 33.5 9.4 75 2-80 69-160 (297)
199 cd00673 AlaRS_core Alanyl-tRNA 51.6 2.9E+02 0.0064 28.5 13.7 107 275-419 3-120 (232)
200 PF02091 tRNA-synt_2e: Glycyl- 49.6 95 0.0021 32.4 8.7 61 344-413 38-100 (284)
201 PRK09130 NADH dehydrogenase su 42.1 88 0.0019 38.0 8.6 76 1-80 1-93 (687)
202 TIGR00388 glyQ glycyl-tRNA syn 40.2 99 0.0021 32.3 7.2 60 345-413 41-102 (293)
203 PRK03147 thiol-disulfide oxido 39.1 1E+02 0.0022 29.6 7.2 53 539-597 95-147 (173)
204 PF02664 LuxS: S-Ribosylhomocy 39.1 93 0.002 30.0 6.4 61 69-131 49-114 (157)
205 PRK09129 NADH dehydrogenase su 39.1 1.1E+02 0.0024 37.7 9.1 57 1-58 1-73 (776)
206 PRK00103 rRNA large subunit me 38.9 1.3E+02 0.0029 29.1 7.6 79 518-597 13-106 (157)
207 PF13510 Fer2_4: 2Fe-2S iron-s 38.7 30 0.00066 29.4 2.9 27 1-28 3-29 (82)
208 PRK07569 bidirectional hydroge 37.6 1.7E+02 0.0036 30.3 8.8 75 1-80 3-93 (234)
209 PLN03194 putative disease resi 34.9 1.3E+02 0.0028 29.9 6.9 49 536-584 24-77 (187)
210 COG0854 PdxJ Pyridoxal phospha 32.5 1.1E+02 0.0024 31.2 6.0 55 536-592 83-149 (243)
211 PRK08493 NADH dehydrogenase su 31.9 2.3E+02 0.005 35.1 9.9 56 1-57 1-70 (819)
212 PRK02260 S-ribosylhomocysteina 29.7 2.2E+02 0.0047 27.6 7.3 56 71-128 52-111 (158)
213 COG1977 MoaD Molybdopterin con 26.3 68 0.0015 27.4 3.0 45 17-61 27-79 (84)
214 PF07801 DUF1647: Protein of u 26.3 2.6E+02 0.0056 26.6 7.1 63 42-122 47-109 (142)
215 PRK07860 NADH dehydrogenase su 25.9 2.4E+02 0.0052 34.9 8.9 77 1-80 4-97 (797)
216 TIGR00246 tRNA_RlmH_YbeA rRNA 24.8 3.1E+02 0.0068 26.4 7.6 79 517-597 11-103 (153)
217 PF09138 Urm1: Urm1 (Ubiquitin 24.6 2.4E+02 0.0051 24.9 6.1 47 16-62 29-92 (96)
218 PF02590 SPOUT_MTase: Predicte 23.0 92 0.002 30.0 3.6 80 517-597 12-106 (155)
219 COG3383 Uncharacterized anaero 22.3 4.1E+02 0.0088 32.3 9.0 57 1-58 5-75 (978)
220 cd00733 GlyRS_alpha_core Class 22.2 2.7E+02 0.0058 29.0 6.7 60 345-413 40-101 (279)
221 COG0752 GlyQ Glycyl-tRNA synth 20.7 2.8E+02 0.0061 28.7 6.5 60 345-413 45-106 (298)
222 PRK12814 putative NADPH-depend 20.6 4.7E+02 0.01 31.5 9.8 72 1-77 3-90 (652)
223 cd01764 Urm1 Urm1-like ubuitin 20.2 1.9E+02 0.0041 25.3 4.7 46 16-61 27-89 (94)
224 PRK09348 glyQ glycyl-tRNA synt 20.1 2.7E+02 0.0058 29.1 6.2 60 345-413 44-105 (283)
225 PF14009 DUF4228: Domain of un 20.1 1.2E+02 0.0025 29.4 3.8 28 2-29 18-45 (181)
226 cd03012 TlpA_like_DipZ_like Tl 20.0 1.8E+02 0.004 26.3 4.9 38 556-597 75-114 (126)
No 1
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-127 Score=1123.56 Aligned_cols=630 Identities=44% Similarity=0.844 Sum_probs=608.2
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~ 80 (783)
|++|+++||+.++++.|+|+.+||+++++.+.+++|||+|||+++||++++..||+|+|++++|++|.++||||++|||+
T Consensus 5 mi~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL~ 84 (639)
T PRK12444 5 MIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEGVEIARHSAAHILA 84 (639)
T ss_pred CeEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCChHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhh
Q psy9574 81 YAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKII 160 (783)
Q Consensus 81 ~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll 160 (783)
+|++++||+.++.++|++++||||||+.+.++|++++.+||++|+++|++|+||++.+++++||+++|++.++++|++|+
T Consensus 85 ~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll 164 (639)
T PRK12444 85 QAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELL 164 (639)
T ss_pred HHHHHHcCCcEEEeCCcCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHH
Confidence 99999999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHHhhhc
Q psy9574 161 NLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEK 240 (783)
Q Consensus 161 ~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~ 240 (783)
+..+.++.|++|+||+|+|+|+||||||||+|+.|+|.+|++|||+||+++++++||||++||++++|++|++.++++++
T Consensus 165 ~~~~~~~~v~iy~~~~~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~~~~~~~ 244 (639)
T PRK12444 165 EAIPSGESITLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAK 244 (639)
T ss_pred hcCCCCCeEEEEEECCEEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCCHHHHHHHHHHHHHhcc
Confidence 98876457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK 320 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 320 (783)
+||++||++|+||++++.++|+++|+|.|+.+++.|++++++.+.++||++|.||+|++.++|.+||||+.|.++||.++
T Consensus 245 ~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d 324 (639)
T PRK12444 245 RNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSE 324 (639)
T ss_pred CCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999668
Q ss_pred eCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHH
Q psy9574 321 SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFN 400 (783)
Q Consensus 321 ~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~ 400 (783)
.+++.++||||+|++++++|++++.||++||+|+||+|+|||+|++|.++||+|+|||+|.|+|+||+++++.+|+.+++
T Consensus 325 ~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~ 404 (639)
T PRK12444 325 VDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVM 404 (639)
T ss_pred CCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999986688999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeec
Q psy9574 401 ELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480 (783)
Q Consensus 401 ~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g 480 (783)
+++.++|+.||++ +.+.++++|.+++|+++.|+.++..+.++|++.|++|.+++|.|+||||++|+.+.|..|+.|+||
T Consensus 405 ~~~~~i~~~lgl~-~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~ 483 (639)
T PRK12444 405 AQIDYVYKTFGFE-YEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCG 483 (639)
T ss_pred HHHHHHHHHcCCc-EEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhccc
Confidence 9999999999996 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCc-chHHHHHHHHH
Q psy9574 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISK-EQIEYAKKVFN 559 (783)
Q Consensus 481 ~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~-~~~~~a~~i~~ 559 (783)
|+|+|+++|.|||++|++.+|+...|+|||++++||+||++++|+|++++.||.|++|.||+|+|+++ +..++|.+|++
T Consensus 484 t~~~d~~~~~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~a~~la~ 563 (639)
T PRK12444 484 TIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQYADEVAD 563 (639)
T ss_pred ceeeecccccccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888999999999999999998 68999999999
Q ss_pred HhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccc
Q psy9574 560 FLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLG 639 (783)
Q Consensus 560 ~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~ 639 (783)
.||++|++|++|.++.++++|+++|++.|+|+++|||++|+++|+|+||++ .+|++ .
T Consensus 564 ~LR~~Gi~veid~~~~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~----------------------~t~~q-~ 620 (639)
T PRK12444 564 KLAQAGIRVERDERDEKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKY----------------------GEEKS-E 620 (639)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEEC----------------------CCCce-e
Confidence 999999999999999999999999999999999999999999999999994 45554 6
Q ss_pred cCCHHHHHHHHHHhh
Q psy9574 640 IVTLEKAFYLAEKEN 654 (783)
Q Consensus 640 ~~~~~~a~~~~~~~~ 654 (783)
.++++++++.+.+..
T Consensus 621 ~i~l~el~~~l~~~~ 635 (639)
T PRK12444 621 VIELDMFVESIKEEI 635 (639)
T ss_pred eeeHHHHHHHHHHHh
Confidence 889999888876554
No 2
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=5.5e-127 Score=1123.74 Aligned_cols=627 Identities=39% Similarity=0.725 Sum_probs=603.0
Q ss_pred CeEEEEcCCeEEEecC-CCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSK-PITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLL 79 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~-g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL 79 (783)
||+|++|||++++++. ++|+.+||+++++.+..++|+|+|||++|||++|++.||+|+|++++|++|+++||||++|||
T Consensus 51 ~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL 130 (686)
T PLN02908 51 PIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHIL 130 (686)
T ss_pred ceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEeccccHHHHHHHHHHHHHHH
Confidence 5899999999999985 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCeEEEcCccc--CcEEEEEecC-CCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHH
Q psy9574 80 AYAVKNLFPDSQIAIGPVIE--NGFYYDFLYK-RSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFK 156 (783)
Q Consensus 80 ~~A~~~l~p~~~~~~~~s~~--~g~y~d~~~~-~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k 156 (783)
++|++++| ++++.++|+++ +|||||+..+ .++|++|+.+||++|+++|++|+||++..++++||+++|+. +++|
T Consensus 131 ~~A~~~~~-~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~--~~~K 207 (686)
T PLN02908 131 GEALELEY-GCKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSE--NKFK 207 (686)
T ss_pred HHHHHHHh-CCeEEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhh--CCcH
Confidence 99999999 89999999998 9999999854 57999999999999999999999999999999999999998 5669
Q ss_pred HHhhccCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHH
Q psy9574 157 KKIINLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIK 236 (783)
Q Consensus 157 ~~Ll~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~ 236 (783)
++|++.+++.+.|++|+||+|+|+|+||||||||+|+.|+|.++++|||+|++++.+|+||||++||++++|++|++.++
T Consensus 208 ~~ll~~~~~~~~v~vY~~g~~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~~~~~~~~ 287 (686)
T PLN02908 208 VEIINDLPEDATITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIE 287 (686)
T ss_pred HHHHhhCCCCCeeEEEEECCEEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCChHHHHHHHhhhh
Confidence 99999887555899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCc
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNM 316 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~m 316 (783)
++++||||+||++|+||+|++.++|+++|+|.|++++++|.+++++.+.++||++|.||.|.+.++|+.||||++|.++|
T Consensus 288 e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~m 367 (686)
T PLN02908 288 EAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENM 367 (686)
T ss_pred hccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHH
Q psy9574 317 FTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEI 396 (783)
Q Consensus 317 y~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~ 396 (783)
|.++.++++++||||+||+|+.+|+++.+||++||+|+|++|+|||+|.+|.++||+|+|||+|+|+|+||+++|+.+++
T Consensus 368 f~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~ 447 (686)
T PLN02908 368 FVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEV 447 (686)
T ss_pred cEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHH
Confidence 99988999999999999999999999999999999999999999999998778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCe
Q psy9574 397 VVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRS 476 (783)
Q Consensus 397 ~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~ 476 (783)
.++++++.++|+.|||+ +.+.+|+|+.+++|+.+.|+.++..|.++|+..|..+++++|.++||||++|+.+.|++++.
T Consensus 448 ~~~l~~~~~v~~~lG~~-~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~ 526 (686)
T PLN02908 448 KGVLDFLDYVYEVFGFT-YELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRK 526 (686)
T ss_pred HHHHHHHHHHHHHCCCc-EEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCE
Confidence 99999999999999996 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeeecCcccccCceeeecCCc-ccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHH
Q psy9574 477 WQCGTIQIDFSMPHRLGAEYIAENNT-RKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAK 555 (783)
Q Consensus 477 ~~~g~~~lD~~~~~r~d~~y~~~~g~-~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~ 555 (783)
|+|+|+|+||++|.|||+.|.+.++. ...|+|||++++||+||++++|+|+++|.||.|++|.||+|+|++++..++|.
T Consensus 527 ~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~ 606 (686)
T PLN02908 527 FQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAE 606 (686)
T ss_pred eeccceeecccCHhhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHH
Confidence 99999999999999999999998876 57999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccC
Q psy9574 556 KVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKN 635 (783)
Q Consensus 556 ~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g 635 (783)
+|++.||++|++|++|.++.++++|+++|++.|+|+++|||++|+++|+|+||++ .+|
T Consensus 607 ~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~----------------------~~~ 664 (686)
T PLN02908 607 EVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTR----------------------DNV 664 (686)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEEC----------------------CCC
Confidence 9999999999999999999999999999999999999999999999999999994 444
Q ss_pred cccccCCHHHHHHHHHHhh
Q psy9574 636 EPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 636 ~~~~~~~~~~a~~~~~~~~ 654 (783)
+ ...++++++++.+++..
T Consensus 665 ~-q~~i~l~el~~~l~~~~ 682 (686)
T PLN02908 665 V-HGEKKIEELLTEFKEER 682 (686)
T ss_pred c-eeeeeHHHHHHHHHHHH
Confidence 4 47899999988877554
No 3
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-118 Score=1055.65 Aligned_cols=631 Identities=54% Similarity=0.977 Sum_probs=607.7
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~ 80 (783)
|++|++++|+.++++.|+|+.|+|+.++....+++|+|+|||+++||++++..||+|+|++.++++|+++||||++|||+
T Consensus 1 ~~~i~~~~g~~~~~~~gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~ 80 (638)
T PRK00413 1 MIKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLLA 80 (638)
T ss_pred CcEEEeCCCCEEEeCCCCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccchhhHHHHhhhHHHHHH
Confidence 78999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhh
Q psy9574 81 YAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKII 160 (783)
Q Consensus 81 ~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll 160 (783)
+|++++||++.+.++|++++|+||||+.+.++|++++.+||++|+++|++|+||++..++++||.++|++.|+++|++|+
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll 160 (638)
T PRK00413 81 QAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELI 160 (638)
T ss_pred HHHHHHcCCceEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHh
Confidence 99999999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHHhhhc
Q psy9574 161 NLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEK 240 (783)
Q Consensus 161 ~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~ 240 (783)
+.++.++.|++|+||+|+|+|+||||||||+|+.|+|.+|++|||++++++++++||+|++|++.+++++|++.+++++.
T Consensus 161 ~~~~~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~e~~~ 240 (638)
T PRK00413 161 EEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAKK 240 (638)
T ss_pred hcCCCCCeEEEEEECCEEEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHHHhcc
Confidence 98876558999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT- 319 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~- 319 (783)
+||+.||+++++|+|++.++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+||||+.+.++||.+
T Consensus 241 ~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~ 320 (638)
T PRK00413 241 RDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTT 320 (638)
T ss_pred ccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHH
Q psy9574 320 KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVF 399 (783)
Q Consensus 320 ~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~ 399 (783)
|.+++.++||||+||+++++++++.+||++||+|+||+|+|||+|++++++||+|+|||+|+|+|+||.++++.+++.++
T Consensus 321 d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~ei 400 (638)
T PRK00413 321 ESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKV 400 (638)
T ss_pred cCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999997777899999999999999999999988888999
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeee
Q psy9574 400 NELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQC 479 (783)
Q Consensus 400 ~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~ 479 (783)
+.++.++|+.||++++.+.+++++.+.+|.++.|+.+.+.+.+.|...|++++.+++.++||||++|+.+.+++|+.+++
T Consensus 401 i~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 480 (638)
T PRK00413 401 IDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQC 480 (638)
T ss_pred HHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEe
Confidence 99999999999998899999999888899999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHH
Q psy9574 480 GTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFN 559 (783)
Q Consensus 480 g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~ 559 (783)
+++++||++++|||+.|++..|+...|+|||++++|++||++++|+|+++|.||.|++|.||+|+|++++..++|.+|++
T Consensus 481 ~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~ 560 (638)
T PRK00413 481 GTIQLDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYAKEVAK 560 (638)
T ss_pred ccEeecccChhhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999988999999999999999999999999999999
Q ss_pred HhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccc
Q psy9574 560 FLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLG 639 (783)
Q Consensus 560 ~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~ 639 (783)
.||++|++|++|+++.++++|+++|++.|+||+||||++|+++|+|+||++ .+|++ .
T Consensus 561 ~Lr~~gi~v~~d~~~~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~----------------------~~~~q-~ 617 (638)
T PRK00413 561 KLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRR----------------------GGKDL-G 617 (638)
T ss_pred HHHhCCCEEEEECCCCCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEEC----------------------CCCcc-c
Confidence 999999999999999999999999999999999999999999999999994 55554 6
Q ss_pred cCCHHHHHHHHHHhh
Q psy9574 640 IVTLEKAFYLAEKEN 654 (783)
Q Consensus 640 ~~~~~~a~~~~~~~~ 654 (783)
.++++++++.+.+..
T Consensus 618 ~i~~~~l~~~i~~~~ 632 (638)
T PRK00413 618 TMSLDEFIERLLEEI 632 (638)
T ss_pred eeeHHHHHHHHHHHH
Confidence 889999988876544
No 4
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-118 Score=1000.44 Aligned_cols=580 Identities=52% Similarity=0.926 Sum_probs=562.2
Q ss_pred eEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCH
Q psy9574 35 AIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTK 114 (783)
Q Consensus 35 ~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~ 114 (783)
++++.+|| .+++.+ ..+++.++ +|..+.|||++|||+.|+.++||+ +.+|+.+++||||||+.+.++|+
T Consensus 2 ~~~~~~~~-~~~~~~-------~~~~~~~~-~~~~~~rhs~ah~l~~av~~l~p~--~~~gp~ie~gfyyd~~~~~~~~~ 70 (589)
T COG0441 2 ALAIHVDG-ELDLKD-------EIITAEDE-EGLEIIRHSCAHVLAQAVKRLYPD--VTIGPVIEEGFYYDFDVKEPITP 70 (589)
T ss_pred ceEEEccc-ceeccc-------cccCccCc-cchhhhhhHHHHHHHHHHHHhCCC--ccccCcccceeEEeeccCCCCCH
Confidence 58999999 888887 33444555 999999999999999999999999 88999999999999998888999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCEEEeccccccCCCCCcce
Q psy9574 115 EDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKI 194 (783)
Q Consensus 115 e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~ 194 (783)
+|+.+||++|++++++++||++..+|+++|++.|. +||+.+++.++ ..+++|+.|+|.|+|.||||||||.| .
T Consensus 71 ~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~----~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t~~i-~ 143 (589)
T COG0441 71 EDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG----PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI-A 143 (589)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh----hhHHHHHhcCC--CCceeEecCccccccCCCCCCccceE-E
Confidence 99999999999999999999999999999999998 89999999988 38999999999999999999999999 9
Q ss_pred EEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhcccccccc-cCCCceEeccChhHHH
Q psy9574 195 FKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQE-ESPGLIFWHPKGYIIL 273 (783)
Q Consensus 195 f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~-~~~G~~~~lP~g~~l~ 273 (783)
|+|++.+++||+||+++++++||||++|++.++++++++++++++++|||+||++|+||++++ .++|++.|+|.|+.++
T Consensus 144 fkl~~~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir 223 (589)
T COG0441 144 FKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIR 223 (589)
T ss_pred EEEEEecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHH
Confidence 999999999999999999999999999999999999999999999999999999999999994 6999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCce
Q psy9574 274 QEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLR 353 (783)
Q Consensus 274 ~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr 353 (783)
+.|+++++.....+||++|.||.+...++|+.||||++|.++||.+..++++|+||||+||+|+.+|++..+|||+||+|
T Consensus 224 ~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r 303 (589)
T COG0441 224 NLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLR 303 (589)
T ss_pred HHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchh
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred EEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhH
Q psy9574 354 FGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIW 433 (783)
Q Consensus 354 ~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~ 433 (783)
++++|.|||+|.||..+||+|+|.|+|.|+|+||+++|..+|+..+++++..+++.||++++.+.++++| +++|+++.|
T Consensus 304 ~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ig~d~~W 382 (589)
T COG0441 304 LAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMW 382 (589)
T ss_pred hhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCC-cccCChhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecc
Q psy9574 434 DLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAI 513 (783)
Q Consensus 434 ~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~ 513 (783)
+.+++.|.++|+..|++|...+|.++||||++|+.+.|++|+.|+|||+|+||++|.||+++|++.+|+.++|+|||+++
T Consensus 383 ~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHrai 462 (589)
T COG0441 383 DKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAI 462 (589)
T ss_pred HHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCCCCccCCEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEE
Q psy9574 514 IGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYII 593 (783)
Q Consensus 514 ~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~i 593 (783)
+|++||++++|+|++.|.||.||||.||+|+|++++..+||.++++.|+++|+||++|++++++|+|+|.|...++||++
T Consensus 463 ~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kKIR~a~~~kipyii 542 (589)
T COG0441 463 LGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKKIREAGTQKIPYVI 542 (589)
T ss_pred chhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhh
Q psy9574 594 IVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVD 656 (783)
Q Consensus 594 ivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~d 656 (783)
|||++|+++++|+||. +.+++.+.|++++++..+++...+
T Consensus 543 VvG~kE~e~~~v~vR~-----------------------r~~~~~~~~~l~e~i~~ik~e~~~ 582 (589)
T COG0441 543 VVGDKEVETGTVVVRR-----------------------RGGKQQKSMTLEELVEELKKEIEG 582 (589)
T ss_pred EEchhhhccCceEEEE-----------------------ccCCccccccHHHHHHHHHHHhhc
Confidence 9999999999999999 888888889999999999877654
No 5
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=3.1e-116 Score=1019.48 Aligned_cols=576 Identities=43% Similarity=0.822 Sum_probs=553.9
Q ss_pred CCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCC
Q psy9574 53 HDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNE 132 (783)
Q Consensus 53 ~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~ 132 (783)
+..+|++++.++.+|..++|||++|||++|++++||++++.+++++++||||||+. .++|++|+.+||++|+++|++|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 28 EPERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred CCceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999999999999999999999999999999999996 58999999999999999999999
Q ss_pred CeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECC-EEEeccccccCCCCCc--ceEEEEeecCccccCCC
Q psy9574 133 LFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGS-FVDLCRGPHVFSTGKL--KIFKLIKLAGSYWKGNQ 209 (783)
Q Consensus 133 pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~-~~d~c~Gp~v~~Tg~i--~~f~l~~~~~g~~~~d~ 209 (783)
||++..++++||+++|.+.++++|.+|++..+. +.|++|+||| |+|+|+||||||||+| +.|+|.+.++.||+||+
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~-~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~ 185 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGIKE-EPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDE 185 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccCCC-CeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhcccc
Confidence 999999999999999999889999999988754 4899999997 8999999999999999 99999999999999999
Q ss_pred cccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc-CCCceEeccChhHHHHHHHHHHHHHHHHcC
Q psy9574 210 KNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEIKKYMRKIYKYNG 288 (783)
Q Consensus 210 ~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G 288 (783)
++++|+||||++|+++++|++|++.++|+++|||++||++|+||+|++. ++|+++|+|.|++++++|++++++...++|
T Consensus 186 ~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G 265 (614)
T PLN02837 186 KNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHG 265 (614)
T ss_pred cCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred CeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCC
Q psy9574 289 YKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSG 367 (783)
Q Consensus 289 ~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g 367 (783)
|++|.||+|.+.++|+.||||+.|.++||.+ +.+++.|+||||+||.|+.+|+++++||++||+|++++|+|||+|.+|
T Consensus 266 ~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g 345 (614)
T PLN02837 266 YDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSG 345 (614)
T ss_pred CEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCC
Confidence 9999999999999999999999999999998 667889999999999999999999999999999999999999999998
Q ss_pred CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhc
Q psy9574 368 SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSS 447 (783)
Q Consensus 368 ~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~ 447 (783)
+.+||+|+|||+|.|+|+||+++++.+++.++++++.++|+.||++.+.+.++++|.+++|+++.|+.++..|.++|+..
T Consensus 346 ~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~ 425 (614)
T PLN02837 346 SLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDK 425 (614)
T ss_pred CCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCceeecCCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHh
Q psy9574 448 GVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVEN 527 (783)
Q Consensus 448 g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~ 527 (783)
|++|...+|.++||||++|+.+.|.+|+.|+|||+|+||++|.|||++|++.+|+.+.|+|||++++|++||++++|+|+
T Consensus 426 ~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~ 505 (614)
T PLN02837 426 GWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEH 505 (614)
T ss_pred CCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeE
Q psy9574 528 YSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITE 607 (783)
Q Consensus 528 ~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~v 607 (783)
|+|.||+|++|.||+|+|++++..++|.+|++.||++|++|++| ++.++|+|+++|++.|+||+|+||++|+++|+|+|
T Consensus 506 ~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~-~~~slgkkir~A~~~gip~~IiIG~~E~e~~~VtV 584 (614)
T PLN02837 506 YAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVC-HGERLPKLIRNAETQKIPLMAVVGPKEVETRTLTV 584 (614)
T ss_pred cCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEe-CCCCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEE
Confidence 99999999999999999999999999999999999999999995 57899999999999999999999999999999999
Q ss_pred EEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 608 REIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 608 r~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
|++ .+|+ ...++++++++.+.+..
T Consensus 585 r~r----------------------~~ge-q~~v~~~el~~~l~~~~ 608 (614)
T PLN02837 585 RSR----------------------HGGE-LGTMPVDDFINRIQLAV 608 (614)
T ss_pred EEC----------------------CCCc-eeEeeHHHHHHHHHHHH
Confidence 993 4444 46889999888876654
No 6
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-111 Score=983.89 Aligned_cols=566 Identities=48% Similarity=0.878 Sum_probs=544.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHH
Q psy9574 63 KDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRD 142 (783)
Q Consensus 63 ~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~e 142 (783)
+|++|+++||||++|||++|++++||++++.+++++++|+||||+.+.++|++++.+||++|+++|++|+||++..++++
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~e 80 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSRE 80 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHH
Confidence 47899999999999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred HHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhcccc
Q psy9574 143 KAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAW 222 (783)
Q Consensus 143 eA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~ 222 (783)
||.++|.. +++|.+|++..+.+ .|++|+||+|+|+|+||||||||+|+.|+|+++++|||+||+++++++||+|++|
T Consensus 81 eA~~~f~~--~~~k~~l~~~~~~~-~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~ 157 (575)
T PRK12305 81 EAREEFAN--EPYKLELIDDIPEE-GITIYDNGDFEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAW 157 (575)
T ss_pred HHHHhCCc--ChhHHHhhhhcCCC-eEEEEEECCEEEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEec
Confidence 99999987 89999999988764 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhhhcccHHHHhhhccccccccc-CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchH
Q psy9574 223 STKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLS 301 (783)
Q Consensus 223 ~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 301 (783)
|++++|++|++.+++++.+||++||++++||++++. ++|+++|+|.|++++++|++++++.+.++||++|.||+|++.+
T Consensus 158 ~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~ 237 (575)
T PRK12305 158 ETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSD 237 (575)
T ss_pred CCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHH
Confidence 999999999999999999999999999999999976 9999999999999999999999999999999999999999999
Q ss_pred HHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEE
Q psy9574 302 LWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQ 380 (783)
Q Consensus 302 l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q 380 (783)
+|.+||||+.|.++||.+ |.+++.++||||+|++++++++++..||++||+|+||+|+|||+|.+++++||+|+|||+|
T Consensus 238 l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q 317 (575)
T PRK12305 238 LWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQ 317 (575)
T ss_pred HHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEE
Confidence 999999999999999999 8899999999999999999999999999999999999999999999888899999999999
Q ss_pred eceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCC-CCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCC
Q psy9574 381 DDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRP-NKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGA 459 (783)
Q Consensus 381 ~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~-~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~ 459 (783)
+|+|+||.++++.+++.++++++.++|+.||++++.+.+++++ .+++|+++.|+.+++.+.++|...|++|.+++|.++
T Consensus 318 ~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~ 397 (575)
T PRK12305 318 DDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAA 397 (575)
T ss_pred cceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcc
Confidence 9999999999999999999999999999999998999999998 678899999999999999999999999999999999
Q ss_pred cccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCc
Q psy9574 460 FYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPI 539 (783)
Q Consensus 460 y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~ 539 (783)
||||++|+.+.|++|+.|+|+|+|+||++|+|||++|++.+|+...|+|||+|++|++||++++|+|++++.||.|++|.
T Consensus 398 ~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~p~ 477 (575)
T PRK12305 398 FYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLAPV 477 (575)
T ss_pred cccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999998999999999999999999999999889999999999
Q ss_pred eEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCccc
Q psy9574 540 QVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRI 619 (783)
Q Consensus 540 qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~ 619 (783)
||+|+|++++..++|.+|++.||++|++|++|+++.++++||++|++.|+||+||||++|+++|+|+||++
T Consensus 478 ~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~--------- 548 (575)
T PRK12305 478 QVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTR--------- 548 (575)
T ss_pred cEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 620 NREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 620 n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
.+|+ ...++++++++.+.+..
T Consensus 549 -------------~~~~-q~~v~~~~l~~~l~~~~ 569 (575)
T PRK12305 549 -------------DGEQ-LNGMPLDEFIELIKEKI 569 (575)
T ss_pred -------------CCCc-eeeeeHHHHHHHHHHHH
Confidence 4444 46899999888776443
No 7
>KOG1637|consensus
Probab=100.00 E-value=7.6e-110 Score=869.36 Aligned_cols=548 Identities=41% Similarity=0.751 Sum_probs=524.4
Q ss_pred EEcCCeEEEe-cCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHHHHH
Q psy9574 5 QISNELKLQF-SKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAV 83 (783)
Q Consensus 5 ~~~~g~~~~~-~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~ 83 (783)
++|||++.+- .-+||+++||.. +..+++.++.++|||.+|||++|++.|| +++++++|++|+.+||||++|+|..|+
T Consensus 4 ~Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vfwhssahvlg~a~ 81 (560)
T KOG1637|consen 4 VLPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVFWHSSAHVLGEAL 81 (560)
T ss_pred ecCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcccceeeeehhhhHhhHHH
Confidence 3999987654 458999999999 8889999999999999999999999999 999999999999999999999999999
Q ss_pred HHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccC
Q psy9574 84 KNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLI 163 (783)
Q Consensus 84 ~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~ 163 (783)
.+.| ++++..|+++++|||||+ . ..++.+|+..||.
T Consensus 82 e~~~-g~~lc~Gpp~~~gf~yd~-~-~~i~~~d~~~~e~----------------------------------------- 117 (560)
T KOG1637|consen 82 EQEY-GAHLCIGPPIEEGFYYDM-L-DEISSNDFPSIEA----------------------------------------- 117 (560)
T ss_pred HHhc-CeeEeeCCCCcCceehhh-h-ccccccccccccc-----------------------------------------
Confidence 9999 699999999999999999 5 3477777766665
Q ss_pred CCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHHhhhcccH
Q psy9574 164 PNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDH 243 (783)
Q Consensus 164 ~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h 243 (783)
|||++||.|+.|++++-++.||.|+ +||+.+.+++|.+..+||+.|||
T Consensus 118 --------------------phi~~tg~ika~k~~~nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~rdH 165 (560)
T KOG1637|consen 118 --------------------PHIRHTGKIKAFKILKNSSAYWEGD------------SFPDPKQLKEWEKFQEEAKKRDH 165 (560)
T ss_pred --------------------ccccccceeeeeeeeccchhhhccc------------cCCCHHHHHHHHhhchhhhhhhh
Confidence 9999999999999999999999987 89999999999999999999999
Q ss_pred HHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCC
Q psy9574 244 RKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSEN 323 (783)
Q Consensus 244 ~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~ 323 (783)
|+||++++||+|++.+||..+|+|.|++++|.|.++++..+++.||+||.||.+.+..||+.||||.+|.++||+++.+.
T Consensus 166 Rkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~ek 245 (560)
T KOG1637|consen 166 RKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEK 245 (560)
T ss_pred hhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeech
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 324 RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 324 ~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
++++|+||+||+||.+|++..+||++||+|++.+|..+|+|.||++.||.|+|.|+|+|+||||+++|.++|+..++++.
T Consensus 246 e~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl 325 (560)
T KOG1637|consen 246 EEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFL 325 (560)
T ss_pred hhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeeccee
Q psy9574 404 HKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQ 483 (783)
Q Consensus 404 ~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~ 483 (783)
..+|.-+|+. +.+.+|+||.+++|+.+.|++|+..|.++|++.|-++.+++|+|+||||++|+.+.|++++..||+|+|
T Consensus 326 ~~vY~~fgf~-f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQ 404 (560)
T KOG1637|consen 326 DYVYGVFGFT-FKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQ 404 (560)
T ss_pred HHHHHhcccc-ceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeee
Confidence 9999999987 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHh
Q psy9574 484 IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKS 563 (783)
Q Consensus 484 lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~ 563 (783)
+|||+|.|||+.|.+.+|..++|+|||++++||+||++++|+|+++|+||.|++|.|+.|||+++....||.+|..+|..
T Consensus 405 LDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~~ 484 (560)
T KOG1637|consen 405 LDFQLPIRFDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLEE 484 (560)
T ss_pred ecccChhhcCceeecccccccchhhHHHHHhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecc---cCccccc
Q psy9574 564 KKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGI---KNEPLGI 640 (783)
Q Consensus 564 ~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~---~g~~~~~ 640 (783)
+|+-+++|..+.++++|++.|......|++|||++|++.++|+||. + ++...+.
T Consensus 485 a~f~~Dld~t~~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~-----------------------Rd~~~~~~~~~ 541 (560)
T KOG1637|consen 485 AGFYVDLDPTDSTLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRT-----------------------RDNRDNKTESE 541 (560)
T ss_pred hhceeecCCccchHHHHHhhhhhcceeEEEEEchhhhhcCceeeec-----------------------cccccccccce
Confidence 9999999999999999999999999999999999999999999998 4 3444568
Q ss_pred CCHHHHHHHHHHhh
Q psy9574 641 VTLEKAFYLAEKEN 654 (783)
Q Consensus 641 ~~~~~a~~~~~~~~ 654 (783)
++.+++.+...+..
T Consensus 542 ~tie~~~~~~~~l~ 555 (560)
T KOG1637|consen 542 MTIEELSDEFKELK 555 (560)
T ss_pred eeHHHHHHHHHHhH
Confidence 88988888776543
No 8
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=3.3e-105 Score=930.27 Aligned_cols=557 Identities=50% Similarity=0.909 Sum_probs=532.5
Q ss_pred HHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhc
Q psy9574 72 RHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSV 151 (783)
Q Consensus 72 ~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~ 151 (783)
|||++|||++|++++||+..+.+++++++|+||||+.+.++|++++.+||++|+++|++|+||++..++++||.++|+ .
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~-~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK-V 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh-c
Confidence 799999999999999999999999999999999999777899999999999999999999999999999999999999 8
Q ss_pred chHHHHHhhccCCCCCeEEEEEECC-EEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHH
Q psy9574 152 NEQFKKKIINLIPNNQEISLYSIGS-FVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEI 230 (783)
Q Consensus 152 ~~~~k~~Ll~~~~~~~~v~iy~~~~-~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~ 230 (783)
++++|.+|+++++..+.|++|+||+ |+|+|+||||||||+|+.|+|.+|++|||++++++.+|+|++|++||+.++|++
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~ 159 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQLAA 159 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCHHHHHH
Confidence 9999999999873334899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccHHHHhhhccccccccc-CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCc
Q psy9574 231 YLHMIKEAEKRDHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHW 309 (783)
Q Consensus 231 ~~~~~~~~~~~~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~ 309 (783)
|++.+++++.+||++||+++|||++++. ++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+||||
T Consensus 160 ~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~ 239 (563)
T TIGR00418 160 YLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHW 239 (563)
T ss_pred HHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCc
Confidence 9999999999999999999999999865 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecC
Q psy9574 310 ENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT 388 (783)
Q Consensus 310 ~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~ 388 (783)
+.|.++||++ |.+++.++||||+|++++++++++..||++||+|+||+|+|||+|.+|.++||+|+|||+|.|+|+||.
T Consensus 240 ~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~ 319 (563)
T TIGR00418 240 DNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT 319 (563)
T ss_pred ccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC
Confidence 9999999998 778899999999999999999999999999999999999999999986689999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecC-CCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEE
Q psy9574 389 KSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALR-PNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEY 467 (783)
Q Consensus 389 ~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~-~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~ 467 (783)
++++++++.+++.++.++|+.||++++.+.++++ +.+++|.+..|+.+...+.++|+..|++|+++++.|+||+|++||
T Consensus 320 ~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f 399 (563)
T TIGR00418 320 EDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDF 399 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEE
Confidence 8889999999999999999999999889999988 447889999999999999999999999999999999999999999
Q ss_pred EeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecC
Q psy9574 468 HLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNIS 547 (783)
Q Consensus 468 ~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~ 547 (783)
.+.|.+|+.|+|||+|+|+++++|||++|.+.+|+...|+|||.|++||+||++++|+|++++.||.|++|.||+|+|++
T Consensus 400 ~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi~~~ 479 (563)
T TIGR00418 400 AFKDALGREWQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVIPVN 479 (563)
T ss_pred EeecCCCCceeeceeeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999887889999999999999999
Q ss_pred cchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccce
Q psy9574 548 KEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPE 627 (783)
Q Consensus 548 ~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~ 627 (783)
++..++|.+|++.||++|++|++|+++.++++|+++|++.|+|++||||++|+++|+|+||++
T Consensus 480 ~~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~----------------- 542 (563)
T TIGR00418 480 ERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTR----------------- 542 (563)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEEC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999995
Q ss_pred EEEecccCcccccCCHHHHHHHHHH
Q psy9574 628 LRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 628 v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
.+|++ ..++++++++.+++
T Consensus 543 -----~~g~q-~~v~~~el~~~i~~ 561 (563)
T TIGR00418 543 -----KGQKL-EKMSLDEFLEKLRK 561 (563)
T ss_pred -----CCCcc-ceeeHHHHHHHHHh
Confidence 55655 67899998877654
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-98 Score=850.85 Aligned_cols=484 Identities=39% Similarity=0.717 Sum_probs=460.7
Q ss_pred cCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCEEEeccc-cccCCCCCcceEEEEeecCccccCCCcccchhhh
Q psy9574 139 ITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCRG-PHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRI 217 (783)
Q Consensus 139 ~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~~d~c~G-p~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri 217 (783)
+|.+||+++|.. ++++.+|++ ++ .|+ .||.++|+|.| |||||||.|++|+|++.+++ ||+++++|+||
T Consensus 46 ~~~~~~~~~~~~--~~~~~~~~~---~~-~~~--~~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~---g~~~~~~l~Ri 114 (545)
T PRK14799 46 ITLDEVKKAINE--NVLANVSIE---NN-QIV--YKGNKVSIIEDKVSISTNLNPKYFEILNISTH---HPNPNEQYVRI 114 (545)
T ss_pred ccHHHHHHHHhc--CcceeeEee---cC-cEE--EccCceeecCCCCCCCCCCCcceEEEEEeccC---CCccCceeEEE
Confidence 467889999988 889998887 32 444 49999999999 99999999999999999998 89999999999
Q ss_pred hccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc-CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCc
Q psy9574 218 YGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQ 296 (783)
Q Consensus 218 ~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~ 296 (783)
||++|+++++|++|++.++||++||||+||++|+||+|++. ++|+++|+|.|+.+++.|++++++.+.++||++|.||+
T Consensus 115 yg~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~ 194 (545)
T PRK14799 115 RGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSH 194 (545)
T ss_pred EEeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCc
Confidence 99999999999999999999999999999999999999865 99999999999999999999999999999999999999
Q ss_pred ccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccce
Q psy9574 297 MLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTR 376 (783)
Q Consensus 297 l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~R 376 (783)
|++.++|+.||||+.|.++||.++.++++++||||+||+|+++|+++.+||++||+|++++|+|||+|.+|..+||+|+|
T Consensus 195 i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvR 274 (545)
T PRK14799 195 VFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVR 274 (545)
T ss_pred cchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccce
Confidence 99999999999999999999999989999999999999999999999999999999999999999999998899999999
Q ss_pred eEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe--eEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeec
Q psy9574 377 SFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK--KIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEF 454 (783)
Q Consensus 377 eF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~--~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~ 454 (783)
||+|+|+|+||+++|+.+|+.++++++.++|+.||++ ++.+.+++||.+++|+++.|+++++.+.++|++.|++|.+.
T Consensus 275 eF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~ 354 (545)
T PRK14799 275 GFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIK 354 (545)
T ss_pred eEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEe
Confidence 9999999999999999999999999999999999995 59999999999999999999999999999999999999999
Q ss_pred CCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCC
Q psy9574 455 PGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPL 534 (783)
Q Consensus 455 ~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~ 534 (783)
+|.++||||++|+.+.|++|+.|+|+|+|+||++|.||+++|++.+|+..+|+|||+|++||+||++++|+|++.|.||.
T Consensus 355 ~g~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~ 434 (545)
T PRK14799 355 EKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPT 434 (545)
T ss_pred cceeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999988899999
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecC
Q psy9574 535 WLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDR 614 (783)
Q Consensus 535 ~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~ 614 (783)
|++|.||+|+|++++..++|.+|++.||++|++|++|+++.++++|+++|++.|+||++|||++|+++|+|+||+
T Consensus 435 wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~----- 509 (545)
T PRK14799 435 WLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRA----- 509 (545)
T ss_pred CCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEE-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhh
Q psy9574 615 PKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVD 656 (783)
Q Consensus 615 ~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~d 656 (783)
.++.....++++++++.+.+....
T Consensus 510 ------------------r~~~eq~~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 510 ------------------RGNIEVRNVKFEKFLELLITEIAQ 533 (545)
T ss_pred ------------------CCCCceEEEcHHHHHHHHHHHHhh
Confidence 444445789999998887765543
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=4e-72 Score=643.84 Aligned_cols=432 Identities=26% Similarity=0.447 Sum_probs=392.0
Q ss_pred cccCCCcccchhhhhccccccchhhHHHHHHHHh------hhcccHHHHhhhccccccccc-CCCceEeccChhHHHHHH
Q psy9574 204 YWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKE------AEKRDHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEI 276 (783)
Q Consensus 204 ~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~------~~~~~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l 276 (783)
+|..-.+...+.++....|++.++|+.+.+. |- ...+||++||+++|||++++. ++|++.|+|.|++++++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-e~~~~~~~~~~~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L 233 (613)
T PRK03991 155 YWYILTPDGELHDPEEFDFSGYEDLKALVDY-EVGKKELVGGEPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLL 233 (613)
T ss_pred eEEEECCCCCeecccccccCCcHHHHHHHHH-HhhccccCCCCCCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHH
Confidence 4544344455888888899888889888764 22 224699999999999999876 899999999999999999
Q ss_pred HHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEE
Q psy9574 277 KKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGE 356 (783)
Q Consensus 277 ~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~ 356 (783)
++++++.+.++||++|.||.+.+.++|..+|||+.|.++||.++.++++++||||+|++++.+|+++++||++||+|+++
T Consensus 234 ~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e 313 (613)
T PRK03991 234 EDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYE 313 (613)
T ss_pred HHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhhe
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ecc-eeecCCCCCCCCcccceeEEEeceeEecCc-hhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHH
Q psy9574 357 FGQ-CHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWD 434 (783)
Q Consensus 357 ~g~-~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~ 434 (783)
+|+ |||+|.+|..+||+|+|||+|.|+|+||.+ +|+.+++.++++++.++|+.||++ +.+.+++ ..+.|+
T Consensus 314 ~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~-~~~~~~~-------t~df~~ 385 (613)
T PRK03991 314 LSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRD-YEVAIRF-------TEDFYE 385 (613)
T ss_pred ecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEecC-------HHHHhh
Confidence 999 999999977899999999999999999996 899999999999999999999998 6666644 246799
Q ss_pred HHHHHHHHHHHhcCCceee--cCCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeec
Q psy9574 435 LAENSLREAISSSGVTWEE--FPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRA 512 (783)
Q Consensus 435 ~~~~~l~~~l~~~g~~~~~--~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~ 512 (783)
.+++.|.++|+..|+++.+ .+|.++||||++|+.+.|++|+.|+|||+|+|+++|.|||++|++.+|+.+.|+++|++
T Consensus 386 ~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~g~~~~Pviih~~ 465 (613)
T PRK03991 386 ENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYPIILHCS 465 (613)
T ss_pred hHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCCCCEeeCEEEEEC
Confidence 8999999999999999876 68999999999999999999999999999999999999999999999998899999999
Q ss_pred ccccHHHHHHHHHHhcCCC--------CCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 513 IIGSLERFIAILVENYSGA--------MPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 513 ~~G~ieRli~~LlE~~~~~--------~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+|+++|+|++|+|+++|. ||+|+||+||+|+|++++..++|.+|++.||++|++|++|+++.++|+|+++|
T Consensus 466 ~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lDdr~~slgkKir~A 545 (613)
T PRK03991 466 PTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDDRDESLGKKIRDA 545 (613)
T ss_pred CEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHH
Confidence 9999999999999999886 99999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCC
Q psy9574 585 SLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFA 664 (783)
Q Consensus 585 ~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~ 664 (783)
++.|+|++||||++|+++|+|+||+ +++.+...++++++++.+.+.... .|..
T Consensus 546 ~~~GiP~iIVIG~kEle~g~VtVr~-----------------------R~t~eq~~v~l~eli~~l~~~~~~----~p~~ 598 (613)
T PRK03991 546 GKEWIPYVVVIGDKEMESGKLTVTI-----------------------REESEKVEMTLEELIERIKEETKG----YPYR 598 (613)
T ss_pred HHcCCCEEEEECcchhhCCeEEEEE-----------------------CCCCceEEeeHHHHHHHHHHHHhc----CCCC
Confidence 9999999999999999999999999 555555789999998888755432 4444
Q ss_pred CCCceEe
Q psy9574 665 KPPVARL 671 (783)
Q Consensus 665 ~ppvcki 671 (783)
..|..+.
T Consensus 599 ~~~~~~~ 605 (613)
T PRK03991 599 PLPLPRL 605 (613)
T ss_pred CCCcChh
Confidence 4444443
No 11
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.8e-65 Score=546.31 Aligned_cols=297 Identities=54% Similarity=1.073 Sum_probs=289.8
Q ss_pred cHHHHhhhccccccccc-CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee
Q psy9574 242 DHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK 320 (783)
Q Consensus 242 ~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 320 (783)
||++||++++||++.+. ++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+|||++.|.++||.++
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 80 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE 80 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec
Confidence 79999999999999876 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHH
Q psy9574 321 SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFN 400 (783)
Q Consensus 321 ~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~ 400 (783)
.+++.++||||+|+++++++++++.||++||+|++|+|+|||+|.++.++||+|+|||+|.|+|+||+++++.+++.+++
T Consensus 81 ~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l 160 (298)
T cd00771 81 EEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVL 160 (298)
T ss_pred cCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHH
Confidence 77889999999999999999999999999999999999999999987789999999999999999999999999989999
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeec
Q psy9574 401 ELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480 (783)
Q Consensus 401 ~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g 480 (783)
+++.++|+.||++.+.+.+++++.++.|+.+.|+.++..++++|.+.|++|++.+|+++||||++|+.+.|++|+.||||
T Consensus 161 ~~~~~~l~~lgl~~~~i~l~~~~~~~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~ 240 (298)
T cd00771 161 DLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCS 240 (298)
T ss_pred HHHHHHHHHcCCCcEEEEEEcChhHhcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecc
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCC
Q psy9574 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAP 538 (783)
Q Consensus 481 ~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap 538 (783)
|+|+|+++|.|||++|++.+|+.++|+|||++++|++||+|++|+|+|+|.||.||||
T Consensus 241 t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs~eR~i~~l~e~~~g~~P~wlaP 298 (298)
T cd00771 241 TIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298 (298)
T ss_pred eeEeeccChhhcCCEEEccCCCccCCEEEEeCCCCcHHHHHHHHHHhhCCCCCCccCc
Confidence 9999999999999999999999999999999999999999999999999999999998
No 12
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-62 Score=550.33 Aligned_cols=379 Identities=24% Similarity=0.367 Sum_probs=333.3
Q ss_pred HhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCC
Q psy9574 236 KEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN 315 (783)
Q Consensus 236 ~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~ 315 (783)
.+++..+|+.|++. |+| +..++|+++|+|.|++++++|++++++.+.++||++|.||.|.+.++|+.||||+.|.++
T Consensus 16 ~~~~~~~~~ll~r~-g~~--~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~e 92 (439)
T PRK12325 16 KEAEIVSHRLMLRA-GMI--RQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKE 92 (439)
T ss_pred cccchHHHHHHHHc-CCc--cccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchh
Confidence 35678899999999 855 456999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc-hhHH
Q psy9574 316 MFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIK 393 (783)
Q Consensus 316 my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~ 393 (783)
||.+ +.++++++|+||+|+.++.++++.+.||++||+|+||+|+|||+|.+ |++||+|+|||+|.|+|+||.+ +++.
T Consensus 93 mf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~-~~~GL~R~reF~~~D~h~f~~~~~~a~ 171 (439)
T PRK12325 93 MLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR-PRFGVMRGREFLMKDAYSFDLDEEGAR 171 (439)
T ss_pred heEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC-CCCCccccceEeEeccEEEeCCHHHHH
Confidence 9998 77889999999999999999999999999999999999999999987 6999999999999999999876 6788
Q ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeecCCCC-----------CCC-----------------ChhhHHHHHHHHHHHHH
Q psy9574 394 NEIVVFNELVHKVYNEFGFKKIKIKLALRPNK-----------RIG-----------------ENNIWDLAENSLREAIS 445 (783)
Q Consensus 394 ~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~-----------~~g-----------------~~~~~~~~~~~l~~~l~ 445 (783)
+++.++++++.++|+.|||+.+.+.+++++.. ..| ....|+. ..|.++|+
T Consensus 172 ~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l~ 249 (439)
T PRK12325 172 HSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIVD 249 (439)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHHHHh
Confidence 89999999999999999999888888877631 112 2234664 67888888
Q ss_pred hcCCce---eecCCCCCcc-cccEEEEeec--CCCCeeeecceeeecCcccccCceeeecCCcccccEEEeeccccc-HH
Q psy9574 446 SSGVTW---EEFPGEGAFY-GPKIEYHLKD--SIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGS-LE 518 (783)
Q Consensus 446 ~~g~~~---~~~~g~~~y~-g~~~e~~~~d--~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~-ie 518 (783)
..+..| ...++.++++ +|+.++...+ ..|+.|++|+ .+|.+|+++|.+.+|+.. ++|++++|. ++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~-----~ys~~f~~~y~d~~g~~~---~i~~~~~GiGie 321 (439)
T PRK12325 250 EWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGT-----KYSEPMNAKVQGPDGKEV---PVHMGSYGIGVS 321 (439)
T ss_pred hhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcc-----cccHhcCCEEECCCCCEE---eEEEeeeECCHH
Confidence 777655 3445677888 9988876655 4577777777 368999999999999764 477788885 99
Q ss_pred HHHHHHHHhcC----CCCCCCCCCceEEEEec---CcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCE
Q psy9574 519 RFIAILVENYS----GAMPLWLAPIQVMILNI---SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPY 591 (783)
Q Consensus 519 Rli~~LlE~~~----~~~P~~lap~qv~Vi~~---~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~ 591 (783)
|++++|+|+++ +.||.|++|+||+|+|+ +++..++|.+|++.|+++|++|++|+++.++|+|+++|++.|+||
T Consensus 322 Rli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a~~~giP~ 401 (439)
T PRK12325 322 RLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMDLIGLPW 401 (439)
T ss_pred HHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHHHHcCCCE
Confidence 99999999984 49999999999999999 567889999999999999999999999999999999999999999
Q ss_pred EEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHH
Q psy9574 592 IIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAE 651 (783)
Q Consensus 592 ~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~ 651 (783)
+||||++|+++|+|+||+ +++.....++++++++.+.
T Consensus 402 ~iiVG~~e~~~~~V~vr~-----------------------r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 402 QIIVGPKGLAEGKVELKD-----------------------RKTGEREELSVEAAINRLT 438 (439)
T ss_pred EEEECCcccccCeEEEEE-----------------------cCCCceEEEEHHHHHHHHh
Confidence 999999999999999999 4444457899999887653
No 13
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-57 Score=512.22 Aligned_cols=350 Identities=24% Similarity=0.378 Sum_probs=310.8
Q ss_pred cHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-
Q psy9574 242 DHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT- 319 (783)
Q Consensus 242 ~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~- 319 (783)
.|..|++.++|+++.+ ++|+++|+|.|++++++|++++++.+.++||++|.||.|.+.++|.+ +||++.|.++||.+
T Consensus 17 w~~~~~~~~~l~d~~~-v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~ 95 (477)
T PRK08661 17 WYNDVVKKAELADYSP-VKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVT 95 (477)
T ss_pred HHHHHHHHccCcccCC-CCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEE
Confidence 4888999999998876 89999999999999999999999999999999999999999999976 89999999999998
Q ss_pred eeC----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeE-ecCchhHHH
Q psy9574 320 KSE----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHI-FCTKSQIKN 394 (783)
Q Consensus 320 ~~~----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~ 394 (783)
+.+ +++++||||+|++++.+|+++++||++||+|+||+++|||+|.+ ++||+|+|||+|.|+|+ |++++++.+
T Consensus 96 ~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~--~rgl~R~rEF~~~E~h~~~~~~eea~~ 173 (477)
T PRK08661 96 HGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK--TRPFLRTREFLWQEGHTAHATEEEAEE 173 (477)
T ss_pred ccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC--CCCcceeeeEEEcceeeeeCCHHHHHH
Confidence 444 47899999999999999999999999999999999999999996 56999999999999996 677789999
Q ss_pred HHHHHHHHHHHHH-hhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCC
Q psy9574 395 EIVVFNELVHKVY-NEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSI 473 (783)
Q Consensus 395 e~~e~~~~~~~i~-~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~ 473 (783)
++.++++++.++| +.|||+... +.++ .|++ ..++++...+|+.++|
T Consensus 174 e~~~~l~~y~~i~~~~Lglp~~~---~~~~--------~~ek--------------------f~ga~~~~~ie~~~~d-- 220 (477)
T PRK08661 174 ETLEMLEIYKEFFEDYLAIPVII---GKKT--------EWEK--------------------FAGADYTYTIEAMMPD-- 220 (477)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEE---EecC--------hHHh--------------------hCCCcceeEEEEEeCC--
Confidence 9999999999999 999998332 2222 1221 1245566678988887
Q ss_pred CCeeeeccee-eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEec--
Q psy9574 474 GRSWQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNI-- 546 (783)
Q Consensus 474 g~~~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~-- 546 (783)
|+.+++||++ +|.++|++||++|.+.+|+.+.| |.+++|+.+|+|++|+|+|++ .||+|+||+||+|+|+
T Consensus 221 gr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v---~~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~ 297 (477)
T PRK08661 221 GKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYV---HQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFK 297 (477)
T ss_pred CCEEEEEEecccccchhHhcCCEEECCCCCEeee---EEecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecC
Confidence 8999999996 99999999999999999987765 558899779999999999885 7999999999999999
Q ss_pred ----CcchHHHHHHHHHHhHhCCCeEEEEC-CCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCccccc
Q psy9574 547 ----SKEQIEYAKKVFNFLKSKKFRVEVDL-RNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINR 621 (783)
Q Consensus 547 ----~~~~~~~a~~i~~~Lr~~gi~v~~d~-~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~ 621 (783)
+++..++|.+|++.|+++|++|++|+ ++.++|+||++|++.|+|++|+||++|+++|+|+|++
T Consensus 298 ~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~GvP~~IiIG~~ele~~~V~ik~------------ 365 (477)
T PRK08661 298 KEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVR------------ 365 (477)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECcchhhcCeEEEEE------------
Confidence 56788999999999999999999999 5789999999999999999999999999999999999
Q ss_pred ccccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 622 EIIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 622 ~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
++......++++++++.+.+.
T Consensus 366 -----------rdtgek~~v~~~el~~~l~~~ 386 (477)
T PRK08661 366 -----------RDTLEKETVPLDELVEKVPEL 386 (477)
T ss_pred -----------CCCCceEEEEHHHHHHHHHHH
Confidence 444344689999988777643
No 14
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=5.2e-57 Score=508.95 Aligned_cols=374 Identities=20% Similarity=0.292 Sum_probs=316.4
Q ss_pred chhhHHHHHHHHhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHh
Q psy9574 225 KKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWK 304 (783)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~ 304 (783)
.+++.+|... |..+.||+++ ..++|+++|+|.|+.+++.|++++++.+.++||++|.||.|++.++|.
T Consensus 5 ~~~f~~wy~~-----------l~~~~~li~~-~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~ 72 (472)
T TIGR00408 5 MQDFSEWYHQ-----------ILEKAEIIDY-YPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELA 72 (472)
T ss_pred cccHHHHHHH-----------HHHHcCCccc-cCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHH
Confidence 4556666533 3444488776 358999999999999999999999999999999999999999999999
Q ss_pred h-hCCcccCCCCceEe-eeC----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeE
Q psy9574 305 K-TGHWENYKDNMFTT-KSE----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSF 378 (783)
Q Consensus 305 ~-sg~~~~~~~~my~~-~~~----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF 378 (783)
+ ++||+.|.++||.+ +.+ +++++||||+|++++.+|+++++||++||+|+||+++|||+|.+ +++||+|+|||
T Consensus 73 ~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~-~~~gl~R~rEF 151 (472)
T TIGR00408 73 KEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETK-HTRPFLRTREF 151 (472)
T ss_pred hhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCC-CCCCcceeeee
Confidence 8 56999999999999 444 48999999999999999999999999999999999999999997 47999999999
Q ss_pred EEecee-EecCchhHHHHHHHHHHHHHHHHh-hcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCC
Q psy9574 379 IQDDGH-IFCTKSQIKNEIVVFNELVHKVYN-EFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPG 456 (783)
Q Consensus 379 ~q~d~~-~f~~~~~~~~e~~e~~~~~~~i~~-~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g 456 (783)
+|.|+| +|++++++.+++..+++++.++|. .|||+... ...+...++.|
T Consensus 152 ~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~-~~~~~~ek~~g---------------------------- 202 (472)
T TIGR00408 152 TWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFV-GRKPEWEKFAG---------------------------- 202 (472)
T ss_pred ehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEE-EecCchhhcCC----------------------------
Confidence 999999 688999999999999999999998 99998433 22221122222
Q ss_pred CCCcccccEEEEeecCCCCeeeeccee-eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----C
Q psy9574 457 EGAFYGPKIEYHLKDSIGRSWQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----A 531 (783)
Q Consensus 457 ~~~y~g~~~e~~~~d~~g~~~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~ 531 (783)
+.+...+|+.++| |+.+++||++ +|+++|++|+++|.+.+|+. .++|++++|..+|+|++|+|+|++ .
T Consensus 203 --a~~~~~~e~~~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~---~~~h~~s~Gi~eRli~~lie~~~d~~gl~ 275 (472)
T TIGR00408 203 --AEYTWAFETIMPD--GRTLQIATSHNLGQNFAKTFEIKFETPTGDK---EYAYQTSYGISTRVIGALIAIHSDEKGLV 275 (472)
T ss_pred --ccceEEEeEEEcC--CCEEEEeeeecccccccHhcCCEEECCCCCE---EeeEEccccHHHHHHHHHHHHhCCCCcee
Confidence 2233347777877 7899999999 99999999999999998865 456779999669999999998874 7
Q ss_pred CCCCCCCceEEEEec--C----cchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCce
Q psy9574 532 MPLWLAPIQVMILNI--S----KEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKI 605 (783)
Q Consensus 532 ~P~~lap~qv~Vi~~--~----~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V 605 (783)
||+|+||+||+|+|+ + ++..++|.+|++.|+++|++|++|+++.++|+||++|++.|+|++|+||++|+++|+|
T Consensus 276 ~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gkk~k~Ae~~GvP~~IiIG~~Ele~~~V 355 (472)
T TIGR00408 276 LPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLRIEVGPNDIEKNIA 355 (472)
T ss_pred eChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECcchhhCCeE
Confidence 999999999999998 3 3578999999999999999999999988999999999999999999999999999999
Q ss_pred eEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHh
Q psy9574 606 TEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKA 685 (783)
Q Consensus 606 ~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~ 685 (783)
+|++ +++.....++++++.+.+.+.. -++...+|++.++.
T Consensus 356 ~ik~-----------------------rdt~eq~~v~l~el~~~l~~~l-----------------~~~~~~l~~~a~~~ 395 (472)
T TIGR00408 356 VISR-----------------------RDTGEKYQVSLDQLEERVVELL-----------------NNIQENLRNRAWER 395 (472)
T ss_pred EEEE-----------------------CCCCceEEEEHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 9999 4443446899999887776433 24456666665554
Q ss_pred HH
Q psy9574 686 HE 687 (783)
Q Consensus 686 ~~ 687 (783)
.+
T Consensus 396 ~~ 397 (472)
T TIGR00408 396 FE 397 (472)
T ss_pred HH
Confidence 44
No 15
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.8e-55 Score=487.61 Aligned_cols=334 Identities=20% Similarity=0.350 Sum_probs=281.8
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHHH--cCCeEeecCcccchHHHhhhCCcccCCCCceEeee-------C-------
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYKY--NGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKS-------E------- 322 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~~--~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~-------~------- 322 (783)
.+|+|||+|.|+.++++|+++|++.+.. .||++|.||++.+.+||++||||++|.+.||.... +
T Consensus 27 ~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~~ 106 (456)
T PRK04173 27 LAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVECKKCKKRYRADHLIEELG 106 (456)
T ss_pred hhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeEeCCCCCEeechhhhHHHh
Confidence 8999999999999999999999999987 89999999999999999999999999999998631 0
Q ss_pred --------------------------------------------------CceEEEcCCCcHHHHHHHhcccccCC-CCC
Q psy9574 323 --------------------------------------------------NRFYALKPMNCPGHIQIYNSNFHSYR-DLP 351 (783)
Q Consensus 323 --------------------------------------------------~~~~~LrP~~~~~~~~~~~~~~~s~~-~LP 351 (783)
+...+|||+++++++..|+++++||+ +||
T Consensus 107 ~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dLP 186 (456)
T PRK04173 107 IDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKLP 186 (456)
T ss_pred hhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccCC
Confidence 11345666666666667888899999 999
Q ss_pred ceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC--CCCCC
Q psy9574 352 LRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN--KRIGE 429 (783)
Q Consensus 352 lr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~--~~~g~ 429 (783)
++++|+|+|||+|.+ +++||+|+|||+|+|+|+||+++|+.+++..+++++.++|..||++...+.+++++. ...|+
T Consensus 187 lr~aq~g~~~RnE~s-~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys 265 (456)
T PRK04173 187 FGIAQIGKSFRNEIT-PRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHLPEELAHYS 265 (456)
T ss_pred eeeeEEchhHhCccC-CCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecCcchhhccH
Confidence 999999999999998 599999999999999999999999999999999999999999999888889988753 45678
Q ss_pred hhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeee-c--ceeeecCcc-----cccCceee--ec
Q psy9574 430 NNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQC-G--TIQIDFSMP-----HRLGAEYI--AE 499 (783)
Q Consensus 430 ~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~-g--~~~lD~~~~-----~r~d~~y~--~~ 499 (783)
...|+.. ++. ..|+.|++ + +.+.||+++ .+||+.|. +.
T Consensus 266 ~~~wd~e------~~~--------------------------~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~ 313 (456)
T PRK04173 266 KATWDIE------YKF--------------------------PFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDET 313 (456)
T ss_pred HHHHhHH------HhC--------------------------CCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecCC
Confidence 8888831 111 11222321 1 123566665 48999999 56
Q ss_pred CCcccccEEEeecccccHHHHHHHH-HHhcCC------------CCCCCCCCceEEEEecCc--chHHHHHHHHHHhHhC
Q psy9574 500 NNTRKTPVMLHRAIIGSLERFIAIL-VENYSG------------AMPLWLAPIQVMILNISK--EQIEYAKKVFNFLKSK 564 (783)
Q Consensus 500 ~g~~~~p~~i~~~~~G~ieRli~~L-lE~~~~------------~~P~~lap~qv~Vi~~~~--~~~~~a~~i~~~Lr~~ 564 (783)
+|++.+|+|||+++ | +||++.++ .+++.+ .||+|+||+||+|+|+++ +..++|.+|++.||++
T Consensus 314 ~~~~~~P~vi~~si-G-ieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~ 391 (456)
T PRK04173 314 TGEKYIPYVIEPSA-G-LDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD 391 (456)
T ss_pred CCceeeeEEEEecc-c-HHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc
Confidence 78888999999874 7 99965555 555555 699999999999999987 4789999999999999
Q ss_pred CCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHH
Q psy9574 565 KFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLE 644 (783)
Q Consensus 565 gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~ 644 (783)
++|++|++ .++|+|+++|++.|+||+||||++|+++|+|+||+ .+..+...++++
T Consensus 392 -irVelD~~-~slgkkir~A~~~Gip~~IIIG~~El~~g~VtvR~-----------------------r~t~eq~~v~l~ 446 (456)
T PRK04173 392 -FNVDYDDS-GSIGKRYRRQDEIGTPFCITVDFDTLEDNTVTIRD-----------------------RDTMEQVRVKID 446 (456)
T ss_pred -CEEEEeCC-CCHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEE-----------------------CCCCceEEEeHH
Confidence 99999975 69999999999999999999999999999999999 444445788999
Q ss_pred HHHHHHHH
Q psy9574 645 KAFYLAEK 652 (783)
Q Consensus 645 ~a~~~~~~ 652 (783)
++++.+.+
T Consensus 447 el~~~l~~ 454 (456)
T PRK04173 447 ELKDYLAE 454 (456)
T ss_pred HHHHHHHh
Confidence 98877653
No 16
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-56 Score=410.40 Aligned_cols=170 Identities=60% Similarity=0.943 Sum_probs=167.1
Q ss_pred CCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHhHHhhhccc
Q psy9574 614 RPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKAHEVKMKQK 693 (783)
Q Consensus 614 ~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~~~~~kk~~ 693 (783)
.+.++||++|++++|||||.+|+++|+++++||+++|++.++|||+|+|+++||||||||||||+||++||++|+||+|+
T Consensus 7 ~~~~~iN~~Ir~~evrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYGKfkye~~KK~kEakKkQk 86 (176)
T COG0290 7 KKEPLINEEIRAREVRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKAKEAKKKQK 86 (176)
T ss_pred cccccccccccccEEEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeeccchHHHHHHHHHHHhhcCc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCccccCeeE
Q psy9574 694 VILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQM 773 (783)
Q Consensus 694 ~~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 773 (783)
.+++|||+|+|+|++|||++|++|+++||++|++|||+|+|||||++|+|.|.++|++|.++++++|.+|+.|+|+|++|
T Consensus 87 ~i~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG~~~l~r~~~~~~~~~~ve~~pk~egr~m 166 (176)
T COG0290 87 QIQVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDLEDIAKVESEPKMEGRQM 166 (176)
T ss_pred eEEEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHHHHHHHHHHHHhhhhheeecccccCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q psy9574 774 IMILSPRKKK 783 (783)
Q Consensus 774 ~~~~~p~~~~ 783 (783)
+|+|.|+++|
T Consensus 167 ~m~laPkkkk 176 (176)
T COG0290 167 IMVLAPKKKK 176 (176)
T ss_pred EEEEcccCCC
Confidence 9999999876
No 17
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-54 Score=498.70 Aligned_cols=385 Identities=22% Similarity=0.377 Sum_probs=303.0
Q ss_pred hhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCc
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNM 316 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~m 316 (783)
+++..+|+.|.+. |+ +++.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+++|||+.|.++|
T Consensus 17 ~~~~~s~~ll~~a-g~--i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~em 93 (565)
T PRK09194 17 DAEVISHQLLLRA-GY--IRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPEL 93 (565)
T ss_pred ccchhhHHHHHhC-CC--ccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhc
Confidence 4566789999999 74 46679999999999999999999999999999999999999999999999999999999999
Q ss_pred eEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hHHH
Q psy9574 317 FTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QIKN 394 (783)
Q Consensus 317 y~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~~~ 394 (783)
|++ |+++++++||||+|+.++.++++++.||++||+|+||+++|||+|.+ |++||+|+|||+|.|+|+||.++ +++.
T Consensus 94 f~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~r-p~~Gl~R~reF~q~d~~~f~~~~~~a~~ 172 (565)
T PRK09194 94 LRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFIMKDAYSFHADEESLDE 172 (565)
T ss_pred eEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCC-CCCcccccccEEEeeEEEEcCChHHHHH
Confidence 999 78899999999999999999999999999999999999999999976 89999999999999999999875 5677
Q ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeec-CCCC-----------CCCChhh-----------HHHH---------------
Q psy9574 395 EIVVFNELVHKVYNEFGFKKIKIKLAL-RPNK-----------RIGENNI-----------WDLA--------------- 436 (783)
Q Consensus 395 e~~e~~~~~~~i~~~lGl~~~~i~l~~-~~~~-----------~~g~~~~-----------~~~~--------------- 436 (783)
++.++++++.++|+.|||+ +.+..++ +... ..|.++. .+.|
T Consensus 173 ~~~~~~~~~~~i~~~lgl~-~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~ 251 (565)
T PRK09194 173 TYDAMYQAYSRIFDRLGLD-FRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALE 251 (565)
T ss_pred HHHHHHHHHHHHHHHhCCc-cEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccce
Confidence 8899999999999999997 5555432 1110 0010000 0000
Q ss_pred ------------------------------------------------HHHHHHHH--------------HhcCCc----
Q psy9574 437 ------------------------------------------------ENSLREAI--------------SSSGVT---- 450 (783)
Q Consensus 437 ------------------------------------------------~~~l~~~l--------------~~~g~~---- 450 (783)
...+.+++ +..|..
T Consensus 252 ~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v 331 (565)
T PRK09194 252 KVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFL 331 (565)
T ss_pred eecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCcc
Confidence 01111111 111110
Q ss_pred ----------eeecC----------CC---CCcc-----cccE------EEEe---ec--CCC-------Ceeeec-cee
Q psy9574 451 ----------WEEFP----------GE---GAFY-----GPKI------EYHL---KD--SIG-------RSWQCG-TIQ 483 (783)
Q Consensus 451 ----------~~~~~----------g~---~~y~-----g~~~------e~~~---~d--~~g-------~~~~~g-~~~ 483 (783)
.-+++ |. ++++ |..+ |+.. .| ..+ +...+| +.+
T Consensus 332 ~P~Gl~~~v~viiD~sl~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~ 411 (565)
T PRK09194 332 GPVGLPKDVPIIADRSVADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQ 411 (565)
T ss_pred CcccCCCCceEEEeccccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEec
Confidence 00000 00 0000 0000 0000 00 001 223344 334
Q ss_pred eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEecC---cchHHHHHH
Q psy9574 484 IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNIS---KEQIEYAKK 556 (783)
Q Consensus 484 lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~~---~~~~~~a~~ 556 (783)
|+-.++.+|+++|.+.+|+.+.++|.|.|+ | ++|++++|+|+++| .||.++||+||+|+|++ ++..++|.+
T Consensus 412 lG~~ys~~~~~~~~~~~g~~~~~~m~~~gI-G-v~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~ 489 (565)
T PRK09194 412 LGTKYSEAMNATVLDENGKAQPLIMGCYGI-G-VSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEK 489 (565)
T ss_pred CCcchhhccCCEEECCCCCEEeEEEeeEec-h-HHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHH
Confidence 677788999999999999998899966544 4 99999999999764 89999999999999997 667899999
Q ss_pred HHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCc
Q psy9574 557 VFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNE 636 (783)
Q Consensus 557 i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~ 636 (783)
|++.|+++|++|.+|+|+.++|+||++|+++|+|++|+||++|+++|+|+|++ ++..
T Consensus 490 i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~-----------------------r~~g 546 (565)
T PRK09194 490 LYAELQAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKD-----------------------RRTG 546 (565)
T ss_pred HHHHHhccCCeEEEECCCCCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEE-----------------------CCCC
Confidence 99999999999999999999999999999999999999999999999999999 4443
Q ss_pred ccccCCHHHHHHHHH
Q psy9574 637 PLGIVTLEKAFYLAE 651 (783)
Q Consensus 637 ~~~~~~~~~a~~~~~ 651 (783)
....++++++.+.+.
T Consensus 547 e~~~v~~~~l~~~i~ 561 (565)
T PRK09194 547 EKEEVPVDELVEFLK 561 (565)
T ss_pred ceEEEeHHHHHHHHH
Confidence 447899999887664
No 18
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=1.4e-52 Score=480.38 Aligned_cols=387 Identities=22% Similarity=0.382 Sum_probs=302.7
Q ss_pred hhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCc
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNM 316 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~m 316 (783)
+++..+|+.|.+. |+ +++.++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|+.||||+.|.++|
T Consensus 17 ~~~~~s~~ll~ra-g~--i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~em 93 (568)
T TIGR00409 17 DAEVKSHQLLLRA-GF--IRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPEL 93 (568)
T ss_pred ccchhhHHHHHhC-CC--ccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhc
Confidence 4566789999998 74 46779999999999999999999999999999999999999999999999999999999999
Q ss_pred eEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hHHH
Q psy9574 317 FTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QIKN 394 (783)
Q Consensus 317 y~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~~~ 394 (783)
|++ |+++++++||||+|+.++.++++++.||++||+|+||+++|||+|.+ |+.||+|+|||+|.|+|+||.++ +++.
T Consensus 94 f~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~r-pr~Gl~R~REF~~~d~~~f~~~~~~a~~ 172 (568)
T TIGR00409 94 LRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFIMKDAYSFHSDEESLDA 172 (568)
T ss_pred EEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCC-CCCCccccccEEEEEEEEEeCChHHHHH
Confidence 999 78889999999999999999999999999999999999999999975 89999999999999999999985 5677
Q ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeecCCCC-----------CCCChhh-----------HHHH----------------
Q psy9574 395 EIVVFNELVHKVYNEFGFKKIKIKLALRPNK-----------RIGENNI-----------WDLA---------------- 436 (783)
Q Consensus 395 e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~-----------~~g~~~~-----------~~~~---------------- 436 (783)
++..++.++.++|++|||+...+..+++... ..|.++. .+.|
T Consensus 173 e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~ 252 (568)
T TIGR00409 173 TYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELD 252 (568)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccce
Confidence 8889999999999999997444443332110 0111100 0000
Q ss_pred ---------------------------------------------------HHHHHHHH-HhcCCce----ee--cCCC-
Q psy9574 437 ---------------------------------------------------ENSLREAI-SSSGVTW----EE--FPGE- 457 (783)
Q Consensus 437 ---------------------------------------------------~~~l~~~l-~~~g~~~----~~--~~g~- 457 (783)
+.++..++ ....+.+ ++ ..|.
T Consensus 253 ~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~ 332 (568)
T TIGR00409 253 KVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASG 332 (568)
T ss_pred eecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCC
Confidence 11222221 0000000 00 0000
Q ss_pred CCccccc-----E---------------------EEEe--------------ec-----------------CCCCeeeec
Q psy9574 458 GAFYGPK-----I---------------------EYHL--------------KD-----------------SIGRSWQCG 480 (783)
Q Consensus 458 ~~y~g~~-----~---------------------e~~~--------------~d-----------------~~g~~~~~g 480 (783)
..|.||. + ++++ .| ..++...+|
T Consensus 333 ~g~~gpv~~~~~~~i~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvG 412 (568)
T TIGR00409 333 PGSLGPVNINGGIPVLIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVG 412 (568)
T ss_pred CCccCccccccCceEEechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEE
Confidence 0011110 0 0000 00 012223334
Q ss_pred ce-eeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEecCc---chHH
Q psy9574 481 TI-QIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNISK---EQIE 552 (783)
Q Consensus 481 ~~-~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~~~---~~~~ 552 (783)
.+ +|+-.++..|+++|.+.+|+.+.+.|++.|+ |++|++++++|++++ .||+++||+||+|+|+.. +..+
T Consensus 413 hiF~LG~kYS~~~~~~~~d~~g~~~~~~mgcyGI--GvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~ 490 (568)
T TIGR00409 413 HIFQLGTKYSEALKATFLDENGKNQFMTMGCYGI--GVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQ 490 (568)
T ss_pred EeccchhhhHHhcCCEEECCCCCEEEEEEeCCcc--hHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHH
Confidence 22 3555678999999999999988888844432 499999999999875 999999999999999862 5778
Q ss_pred HHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEec
Q psy9574 553 YAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSG 632 (783)
Q Consensus 553 ~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~ 632 (783)
+|.+|++.|+++|++|.+|+|++++|+||++|+++|+|++|+||++++++|+|+|++
T Consensus 491 ~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~----------------------- 547 (568)
T TIGR00409 491 LAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKK----------------------- 547 (568)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEE-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCHHHHHHHHHH
Q psy9574 633 IKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 633 ~~g~~~~~~~~~~a~~~~~~ 652 (783)
+++.....++++++++.+.+
T Consensus 548 R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 548 RRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred cCCCceEEEEHHHHHHHHhh
Confidence 66666689999999887754
No 19
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-51 Score=444.67 Aligned_cols=351 Identities=21% Similarity=0.300 Sum_probs=298.4
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCc-ccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHW-ENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~-~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
.++|+.||+|..+.+|++|++.+++++++|||.+|.||+|+++++|.+ +|.. |...++||.| |++|+.++|||+.|+
T Consensus 6 ~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Ta 85 (429)
T COG0124 6 RPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTA 85 (429)
T ss_pred CCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcH
Confidence 389999999999999999999999999999999999999999999997 5764 3367999999 899999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
|++|++..+.... ..|+|+||+|+|||||+ ||+| |+|||+|+|+++||.++...+ +|++.++.++|+.||+.+
T Consensus 86 pv~R~~~en~~~~-~~p~k~yy~g~vfRyEr--PQ~G--R~RqF~Q~g~E~iG~~~~~~D--AEvi~l~~~~l~~lGi~~ 158 (429)
T COG0124 86 PVARAVAENKLDL-PKPLKLYYFGPVFRYER--PQKG--RYRQFYQFGVEVIGSDSPDAD--AEVIALAVEILEALGIGG 158 (429)
T ss_pred HHHHHHHhccccc-cCCeeEEEecceecCCC--CCCC--CceeeEEcCeEEeCCCCcccC--HHHHHHHHHHHHHcCCCc
Confidence 9999999775443 48999999999999999 8999 999999999999999987555 667999999999999999
Q ss_pred EEEEeecCCC-----CCCCCh------------h--------------------------------hHHHH---------
Q psy9574 415 IKIKLALRPN-----KRIGEN------------N--------------------------------IWDLA--------- 436 (783)
Q Consensus 415 ~~i~l~~~~~-----~~~g~~------------~--------------------------------~~~~~--------- 436 (783)
+.+++|++.. .++|.+ + ..+.|
T Consensus 159 ~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~~~~ 238 (429)
T COG0124 159 FTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDE 238 (429)
T ss_pred EEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHhhhhccH
Confidence 9999997642 111100 0 00000
Q ss_pred -----HHHHHHHHHhcCCceeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccE
Q psy9574 437 -----ENSLREAISSSGVTWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPV 507 (783)
Q Consensus 437 -----~~~l~~~l~~~g~~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~ 507 (783)
-+.+.++|+..|++|.+++ |++||+|++||+..........+||| ||||- .+...|+...|+
T Consensus 239 e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gG--------GRYD~-Lv~~~gG~~~pa 309 (429)
T COG0124 239 ESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGG--------GRYDG-LVEEFGGKPTPA 309 (429)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecC--------ccchH-HHHHhCCCCCCc
Confidence 1566788899999988876 88999999999987543335678998 99995 377788889999
Q ss_pred EEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcC
Q psy9574 508 MLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLE 587 (783)
Q Consensus 508 ~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~ 587 (783)
+ |+..|+||++.+|.+... ..| .-++.+|+|+++++....+|.++++.||++|++|++|..+.++++++++|++.
T Consensus 310 v---GFaiGveRl~~~l~~~~~-~~~-~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~ 384 (429)
T COG0124 310 V---GFAIGVERLILALEEEGK-EDP-VETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKL 384 (429)
T ss_pred e---eEehHHHHHHHHHHHcCC-CCC-cCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHC
Confidence 9 444459999999876521 122 24678999999999888999999999999999999999988899999999999
Q ss_pred CCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 588 KLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 588 gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
|++++||+|++|+++|+|+|||| ..|++ ..++++++.+.+..
T Consensus 385 g~~~~viiGe~E~~~g~v~vKdl----------------------~t~eq-~~v~~~~~~~~~~~ 426 (429)
T COG0124 385 GARFAVILGEDELANGVVTVKDL----------------------ATGEQ-EEVPLDELVEELKE 426 (429)
T ss_pred CCCEEEEEcchHHhcCCEEEeeC----------------------CCCcc-ceecHHHHHHHHHh
Confidence 99999999999999999999997 77765 79999999888764
No 20
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-49 Score=445.66 Aligned_cols=352 Identities=19% Similarity=0.220 Sum_probs=298.6
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-C-CcccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-G-HWENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g-~~~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
.++|+.||+|.++..++.|++.+++.+.++||++|.||+|++.++|.++ | +++.+.++||.+ |.+|+.++|||+.|+
T Consensus 6 ~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~ 85 (430)
T CHL00201 6 AIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTA 85 (430)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcH
Confidence 4899999999999999999999999999999999999999999999884 5 788888999998 788999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
+++++++.+..+++++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.+++..+ .|++.++.++|+.||+++
T Consensus 86 ~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~--~q~G--R~Ref~Q~g~EiiG~~~~~aD--~Evi~l~~~~l~~lGl~~ 159 (430)
T CHL00201 86 GIVRAFIENKMDYHSNLQRLWYSGPMFRYER--PQSG--RQRQFHQLGIEFIGSIDARAD--TEVIHLAMQIFNELQVKN 159 (430)
T ss_pred HHHHHHHHccccccCCCeEEEEEcceecCCC--CcCC--ccceeEEeceEEECCCChhhH--HHHHHHHHHHHHHcCCCc
Confidence 9999987766677789999999999999999 7899 999999999999999987666 678999999999999998
Q ss_pred EEEEeecCCCC----------------C---CC---------------------ChhhHHH-----------HH---HHH
Q psy9574 415 IKIKLALRPNK----------------R---IG---------------------ENNIWDL-----------AE---NSL 440 (783)
Q Consensus 415 ~~i~l~~~~~~----------------~---~g---------------------~~~~~~~-----------~~---~~l 440 (783)
+.+.++++..- . +. ..+.++. +. ..+
T Consensus 160 ~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~~ 239 (430)
T CHL00201 160 LILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYDV 239 (430)
T ss_pred eEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHHH
Confidence 99999973210 0 00 0011111 11 233
Q ss_pred HHHHHhcCCceeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeeccccc
Q psy9574 441 REAISSSGVTWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGS 516 (783)
Q Consensus 441 ~~~l~~~g~~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ 516 (783)
.+.|+..|+++.+++ |++||+|++||+...+..+..++||| ||||- +.+.+|+.+.|++ |++++
T Consensus 240 ~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gG--------GRYD~-L~~~fg~~~~Pav---Gfa~g 307 (430)
T CHL00201 240 CTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGG--------GRYDS-LIHQLGGPKTPAV---GCAIG 307 (430)
T ss_pred HHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeec--------cchHH-HHHHhCCCCCCee---EEEec
Confidence 456777888887775 77899999999987665567789998 99995 6888888889999 66667
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEc
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVG 596 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG 596 (783)
+||++.+|.+. . +.+..|.+|+|+|++++..++|.++++.||++|++|++|.++.++++++++|++.|+|+++|||
T Consensus 308 ~erl~~~l~~~--~--~~~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~~k~A~~~~~~~viiiG 383 (430)
T CHL00201 308 LERLLLIAKDN--I--ILPKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQIKQAGKKRAKACIILG 383 (430)
T ss_pred HHHHHHHHhcc--c--cCCCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 99999987653 2 2234678899999999899999999999999999999999888999999999999999999999
Q ss_pred ccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 597 NKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 597 ~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
++|+++++|+||++ .+|++ ..++++++++.+.+..
T Consensus 384 ~~E~~~~~vtvk~l----------------------~~~~q-~~i~~~~~~~~~~~~~ 418 (430)
T CHL00201 384 DNEIMDNCITIKWL----------------------DEQVQ-ENAQYSNFKQEISYLK 418 (430)
T ss_pred chHHhCCcEEEEEC----------------------CCCCc-EEEcHHHHHHHHHHHH
Confidence 99999999999995 55554 6789999887766544
No 21
>CHL00199 infC translation initiation factor 3; Provisional
Probab=100.00 E-value=4.5e-51 Score=389.90 Aligned_cols=169 Identities=44% Similarity=0.714 Sum_probs=165.5
Q ss_pred cCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHhHHhhhcc
Q psy9574 613 DRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKAHEVKMKQ 692 (783)
Q Consensus 613 ~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~~~~~kk~ 692 (783)
+++.+++|++|++++|||||++|+++|+|++.+|+++|++.++|||+|+|+++||||||||||||+|+++||.+++||+|
T Consensus 12 ~~~~~~iNe~I~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLVeVs~~a~PPVCKImdygK~kye~~KK~keakKkq 91 (182)
T CHL00199 12 SRDLPLINERIRFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDYGKYKFTQEKRAKEAKKKQ 91 (182)
T ss_pred ccccCCcCcccCCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCeEEEeehHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCccccCee
Q psy9574 693 KVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQ 772 (783)
Q Consensus 693 ~~~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 772 (783)
+.+++|||+|+|+|++|||++|++|+++||++|++|+|+|+|||||++|+|.|.++|++|.++|+++|.++++|+++|++
T Consensus 92 ~~~~~KEirl~~~I~~hDl~~K~k~~~kFL~~G~kVkv~i~frGRE~~~~e~g~~ll~r~~~~l~~~a~ve~~pk~eGr~ 171 (182)
T CHL00199 92 HNSSIKEVKMRYKIEEHDYKVRINQAFKFLQAGDKVKATLTFRGREIQHLNLAINLLNKMAADLSSIAEIQQPPSQDGRN 171 (182)
T ss_pred CCccceEEEecCCCCccHHHHHHHHHHHHHHCCCEEEEEEEEchhHHhhHHHHHHHHHHHHHHhhhhheeecCccccCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecC
Q psy9574 773 MIMILSPRK 781 (783)
Q Consensus 773 ~~~~~~p~~ 781 (783)
|+|+|.|++
T Consensus 172 m~~~l~P~k 180 (182)
T CHL00199 172 MIMILSPKK 180 (182)
T ss_pred EEEEEecCC
Confidence 999999974
No 22
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=100.00 E-value=1.3e-49 Score=380.54 Aligned_cols=163 Identities=52% Similarity=0.824 Sum_probs=160.9
Q ss_pred cccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHhHHhhhccccccee
Q psy9574 619 INREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKAHEVKMKQKVILIK 698 (783)
Q Consensus 619 ~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~~~~~kk~~~~~~K 698 (783)
|||+|++++|||||+||+++|+|++.+|+++|++.++|||+|+|+++|||||||||+||+||++|+.++++|+|+.+.+|
T Consensus 1 iNe~I~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLVev~~~a~PPVckImdy~k~~ye~~KK~ke~kkkq~~~~~K 80 (165)
T TIGR00168 1 INERIRFNEVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKPPVCKIMDYGKYKYEQEKKKKEAKKNQKIIQVK 80 (165)
T ss_pred CCcCcCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCcEEEECCCCCCCEEEEeeHHHHHHHHHHHHHHHHhcCCCCcce
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCc-cccCeeEEEEE
Q psy9574 699 EVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFP-KIEGRQMIMIL 777 (783)
Q Consensus 699 ei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 777 (783)
||+|+|+|++|||++|++||++||++||+|+|+|+||||+++|+|+|.++|++|.+.|+++|.+++.| +++|++|+|+|
T Consensus 81 Ei~~~~~I~~hDl~~K~k~~~~FL~kG~kVkv~l~frgRe~~~~e~g~~ll~~i~~~l~~~~~~e~~p~~~eG~~~~~~l 160 (165)
T TIGR00168 81 EVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVRFRGRESTHIELGEKVLDRFYTDVADVAEVEKPPTKSEGRMMSMLL 160 (165)
T ss_pred eEEEcCCCChhhHHHHHHHHHHHHHCCCeEEEEEEEcCCcccCHHHHHHHHHHHHHHhhhhhheecCcccccCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eecC
Q psy9574 778 SPRK 781 (783)
Q Consensus 778 ~p~~ 781 (783)
.|++
T Consensus 161 ~P~~ 164 (165)
T TIGR00168 161 APKK 164 (165)
T ss_pred EeCC
Confidence 9975
No 23
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=100.00 E-value=1.6e-49 Score=384.80 Aligned_cols=169 Identities=59% Similarity=0.939 Sum_probs=166.0
Q ss_pred CCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHhHHhhhcccc
Q psy9574 615 PKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKAHEVKMKQKV 694 (783)
Q Consensus 615 ~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~~~~~kk~~~ 694 (783)
+.+++||+|++++|||||++|+++|+|++.+|+++|++.++|||+|+|+++||||||||||+|+|+++|+.++++|+|+.
T Consensus 9 ~~~~iNe~I~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~dy~k~~ye~~kK~ke~kkkq~~ 88 (177)
T PRK00028 9 KEPRINEQIRAREVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKQKEAKKKQKV 88 (177)
T ss_pred ccCCcCcCcCCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCEEEEEeHHHHHHHHHHHHHHhhhccCc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCccccCeeEE
Q psy9574 695 ILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQMI 774 (783)
Q Consensus 695 ~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 774 (783)
+.+|||+|+|+|++|||++|++||++||++||+|+|+|+||||+++|.|+|.++|++|.+.|+++|++++.|+++|++|+
T Consensus 89 ~~~KEirl~~~I~~hDl~~K~k~~~kFL~kG~kVkv~l~frgre~~~~e~g~~vl~~v~~~l~~~~~~e~~p~~~G~~~~ 168 (177)
T PRK00028 89 IEVKEIKFRPKIDEHDYETKLKHARRFLEKGDKVKVTLRFRGREIAHKELGMELLERVAEDLEDIAKVEQEPKMEGRQMI 168 (177)
T ss_pred cceeEEEEccCCChhHHHHHHHHHHHHHHCCCEEEEEEEEcCCcccCHHHHHHHHHHHHHHcchhhheeccccccCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q psy9574 775 MILSPRKKK 783 (783)
Q Consensus 775 ~~~~p~~~~ 783 (783)
|+|.|+++|
T Consensus 169 ~~l~P~k~k 177 (177)
T PRK00028 169 MVLAPKKKK 177 (177)
T ss_pred EEEEeCCCC
Confidence 999999875
No 24
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=4.8e-44 Score=406.58 Aligned_cols=329 Identities=18% Similarity=0.244 Sum_probs=273.1
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CCcccCCCCceEe-eeCCceEEEcCCCcHH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GHWENYKDNMFTT-KSENRFYALKPMNCPG 335 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~~~~~~~~my~~-~~~~~~~~LrP~~~~~ 335 (783)
.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++ |. ...++||.| |.+|+.++|||+.|++
T Consensus 72 ~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~g~~l~LRpD~T~~ 149 (487)
T PLN02530 72 PPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKGGRRVALRPELTPS 149 (487)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCCCCEEecCCCCcHH
Confidence 4999999999999999999999999999999999999999999999874 54 467899998 8899999999999999
Q ss_pred HHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe--
Q psy9574 336 HIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK-- 413 (783)
Q Consensus 336 ~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~-- 413 (783)
++++++.+..+. ++|+|+||+|+|||+|+ |++| |.|||+|+|+++||.++...+ .|++.++.++|+.||++
T Consensus 150 iaR~~~~~~~~~-~~P~r~~y~g~vfR~e~--~q~g--r~REf~Q~giEiiG~~~~~aD--aEvi~l~~~~l~~lgl~~~ 222 (487)
T PLN02530 150 LARLVLQKGKSL-SLPLKWFAIGQCWRYER--MTRG--RRREHYQWNMDIIGVPGVEAE--AELLAAIVTFFKRVGITSS 222 (487)
T ss_pred HHHHHHhccccc-CCCeEEEEEcCEEcCcC--CCCC--CccceEEcCeeEeCCCCcchh--HHHHHHHHHHHHHcCCCCC
Confidence 999999765443 79999999999999998 8999 999999999999999876444 56799999999999996
Q ss_pred eEEEEeecCCC-----CCC--------------------------------CChhh-----H---H--------------
Q psy9574 414 KIKIKLALRPN-----KRI--------------------------------GENNI-----W---D-------------- 434 (783)
Q Consensus 414 ~~~i~l~~~~~-----~~~--------------------------------g~~~~-----~---~-------------- 434 (783)
++.+.+|++.. ..+ |.... . +
T Consensus 223 ~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~ 302 (487)
T PLN02530 223 DVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDLEALLGAD 302 (487)
T ss_pred ceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHHHHHHHhhhh
Confidence 69999997521 000 00000 0 0
Q ss_pred -HHH---HHHHHHHHhcCCc--eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCccc
Q psy9574 435 -LAE---NSLREAISSSGVT--WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRK 504 (783)
Q Consensus 435 -~~~---~~l~~~l~~~g~~--~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~ 504 (783)
.+. +.+.+.|+..|+. +.+++ |++||+|++||+...+.. ...+||| ||||- .....|+..
T Consensus 303 ~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~-~~~I~gG--------GRYD~-Li~~fgg~~ 372 (487)
T PLN02530 303 SEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGK-LRAICGG--------GRYDR-LLSTFGGED 372 (487)
T ss_pred HHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCC-cceeeec--------ccHHH-HHHHhCCCC
Confidence 011 2334466777875 55554 789999999998763322 2457887 99995 366677778
Q ss_pred ccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 505 TPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 505 ~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.|++ |+..+++|++.++.+. +.+|.|.+|.||+|++++++...+|.++++.||++|++|++|..+.++++++++|
T Consensus 373 ~pAv---GFa~g~~~l~~~l~~~--g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A 447 (487)
T PLN02530 373 TPAC---GFGFGDAVIVELLKEK--GLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHA 447 (487)
T ss_pred CCee---EEEEhHHHHHHHHHhc--CCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 8999 3333489988776443 5688899999999999999999999999999999999999999888999999999
Q ss_pred hcCCCCEEEEEcccccccCceeEEEe
Q psy9574 585 SLEKLPYIIIVGNKELCENKITEREI 610 (783)
Q Consensus 585 ~~~gip~~iivG~~e~~~~~V~vr~~ 610 (783)
++.|+|++++||++|+++|+|+||+|
T Consensus 448 ~k~g~~~iviiG~~E~~~~~V~vK~l 473 (487)
T PLN02530 448 ERIGAKRLVLVGASEWERGMVRVKDL 473 (487)
T ss_pred HHCCCCEEEEEchhHHhCCeEEEEEC
Confidence 99999999999999999999999995
No 25
>KOG2324|consensus
Probab=100.00 E-value=7.3e-43 Score=355.54 Aligned_cols=341 Identities=21% Similarity=0.378 Sum_probs=270.3
Q ss_pred HHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeC
Q psy9574 244 RKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSE 322 (783)
Q Consensus 244 ~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~ 322 (783)
.+|..++| ++.+..+|+|-|+|.|.+..+++.+.++..|+..|.+.|..|++.+.++|+++|+|+..+.+||++ |+.
T Consensus 28 q~LL~e~G--fI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~ 105 (457)
T KOG2324|consen 28 QELLQEVG--FIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK 105 (457)
T ss_pred HHHHHHhC--ccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC
Confidence 34555557 678889999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CceEEEcCCCcHHHHHHHhcccc-cCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchh-HHHHHHHHH
Q psy9574 323 NRFYALKPMNCPGHIQIYNSNFH-SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ-IKNEIVVFN 400 (783)
Q Consensus 323 ~~~~~LrP~~~~~~~~~~~~~~~-s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~-~~~e~~e~~ 400 (783)
|+++||.||++..++.+.+.... ||++||+++||+|+.||+|.+ |+.||+|.|||.|.|+|.|.++++ +.+.+..+.
T Consensus 106 gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElr-pRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~ 184 (457)
T KOG2324|consen 106 GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELR-PRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVD 184 (457)
T ss_pred CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccC-ccccchhhHHHHHhhhhcccCCHHHHHHHHHHHH
Confidence 99999999999999999998776 999999999999999999997 999999999999999999999864 788889999
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCC-----------CCCChhhHHHHHHHHHHHHHhcCCce--e-e-cCC--------C
Q psy9574 401 ELVHKVYNEFGFKKIKIKLALRPNK-----------RIGENNIWDLAENSLREAISSSGVTW--E-E-FPG--------E 457 (783)
Q Consensus 401 ~~~~~i~~~lGl~~~~i~l~~~~~~-----------~~g~~~~~~~~~~~l~~~l~~~g~~~--~-~-~~g--------~ 457 (783)
+.+..+|++||++...+...++... ..|.+.. ..+..+|+.- + + .++ +
T Consensus 185 ~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l---------~~C~~C~~s~n~e~~~~sk~~~Cp~C~~ 255 (457)
T KOG2324|consen 185 QAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTL---------MSCPSCGYSKNSEDLDLSKIASCPKCNE 255 (457)
T ss_pred HHHHHHHHHcCCCeEEEeecccccCceeeeeEeccCccCccce---------eecCcCCccCchhhhcCCccccCCcccC
Confidence 9999999999999888887665431 1122211 0111111100 0 0 000 0
Q ss_pred CCcc-cccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CC
Q psy9574 458 GAFY-GPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AM 532 (783)
Q Consensus 458 ~~y~-g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~ 532 (783)
+-.+ .+.+|+ |+.+.+|+ -++..|+.+|++..|+.....|.+.|+ ++.|+++|.+|...+ +|
T Consensus 256 ~~L~~~~~IEV------gHtF~LG~-----kYS~~lna~f~~~~gKpe~l~MgCyGI--GVtRllaAa~evls~~~~lrw 322 (457)
T KOG2324|consen 256 GRLTKTKSIEV------GHTFLLGT-----KYSKPLNAKFVNVEGKPEFLHMGCYGI--GVTRLLAAAAEVLSDDKGLRW 322 (457)
T ss_pred CCcccccceEE------EEEEEecc-----ccccccCceeeeecCCcceEEecceec--cHHHHHHHHHHHhcccccccc
Confidence 0000 011232 45566665 467999999999999887766754443 499999999997654 99
Q ss_pred CCCCCCceEEEEec-CcchHHHHHHHHHHhHhCC------CeEEEECC-CccHHHHHHHhhcCCCCEEEEEc-ccccccC
Q psy9574 533 PLWLAPIQVMILNI-SKEQIEYAKKVFNFLKSKK------FRVEVDLR-NEKIAYKIRLHSLEKLPYIIIVG-NKELCEN 603 (783)
Q Consensus 533 P~~lap~qv~Vi~~-~~~~~~~a~~i~~~Lr~~g------i~v~~d~~-~~~l~~k~~~A~~~gip~~iivG-~~e~~~~ 603 (783)
|..+|||+|.+++. +......+.+++++|-... =.+.+|+| ..++|+|+++|+++|+|++|||| .....+.
T Consensus 323 P~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~ 402 (457)
T KOG2324|consen 323 PSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNP 402 (457)
T ss_pred ccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCc
Confidence 99999999955544 4555667778887664322 25778888 46999999999999999999999 6667777
Q ss_pred ceeEEE
Q psy9574 604 KITERE 609 (783)
Q Consensus 604 ~V~vr~ 609 (783)
.++|+.
T Consensus 403 ~~EV~~ 408 (457)
T KOG2324|consen 403 EIEVRT 408 (457)
T ss_pred eEEEEE
Confidence 888888
No 26
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-43 Score=386.51 Aligned_cols=361 Identities=21% Similarity=0.388 Sum_probs=279.5
Q ss_pred HhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCC
Q psy9574 236 KEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN 315 (783)
Q Consensus 236 ~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~ 315 (783)
++|+.-.|+.|.+. | ++++.++|+|.|+|.|.+++++|++++++.+.+.|.+||.+|+|.+.++|+.||||+.|+++
T Consensus 16 ~da~~~sh~ll~rA-g--~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~E 92 (500)
T COG0442 16 ADASEWSHQLLLRA-G--MIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPE 92 (500)
T ss_pred chhHHHHHHHHHhc-C--ceecccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchh
Confidence 45666679888888 7 45558999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc-hhHH
Q psy9574 316 MFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIK 393 (783)
Q Consensus 316 my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~ 393 (783)
||++ |.++++++||||+|..++.+++++++||+|||+++|||+++||+|.+ |+.||+|.|||+|.|+|.|+.+ ++++
T Consensus 93 l~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~r-pr~gllR~REF~mkdaySfh~~~e~a~ 171 (500)
T COG0442 93 LFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKR-PRFGLLRGREFLMKDAYSFHADEEDAE 171 (500)
T ss_pred hEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEecccc-CCCCccchheeeecccccccCCHHHHH
Confidence 9999 78899999999999999999999999999999999999999999998 9999999999999999999987 5688
Q ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHH------------------HHHHHHHHHHHhcCCceee--
Q psy9574 394 NEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWD------------------LAENSLREAISSSGVTWEE-- 453 (783)
Q Consensus 394 ~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~------------------~~~~~l~~~l~~~g~~~~~-- 453 (783)
+++.++++++.++|..+|+....+.-. .+++|....++ .+. -+..+. . .+.+.-
T Consensus 172 ~~y~~~~~~Y~~if~~i~l~~~~~~ad---~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~a-N~e~a~-~-~~~~~~~~ 245 (500)
T COG0442 172 ETYEKMLDAYSRIFLRLPLIFGPVPAD---EGFIGGSYSHEFEALMPDGGEDQIATSHHYGA-NFEKAF-I-DIKFEDEE 245 (500)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeeccc---CCCCCCccceEEEEEccCCCccEEEEecchHH-hHHHhc-c-CCCccccc
Confidence 889999999999999998863333222 23344322111 000 000000 0 111000
Q ss_pred ------------------------cCCC-CCccccc----------------------------------------EEEE
Q psy9574 454 ------------------------FPGE-GAFYGPK----------------------------------------IEYH 468 (783)
Q Consensus 454 ------------------------~~g~-~~y~g~~----------------------------------------~e~~ 468 (783)
..|+ ..+.||. .+.-
T Consensus 246 ~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D 325 (500)
T COG0442 246 EGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGD 325 (500)
T ss_pred cccceEecccceEEEeeeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEecc
Confidence 0121 0111211 0000
Q ss_pred eecCCCCee-----e---ecc-eeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCC
Q psy9574 469 LKDSIGRSW-----Q---CGT-IQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLW 535 (783)
Q Consensus 469 ~~d~~g~~~-----~---~g~-~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~ 535 (783)
..+..|..+ . +|- ++++-.++..++.++.+.+|+.+...|++.|. +++|++++++|+++| .||..
T Consensus 326 ~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygi--gvsr~v~a~ieq~~d~~gi~w~~a 403 (500)
T COG0442 326 DRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGI--GVSRLVAALLEQIHDENGIIWPKA 403 (500)
T ss_pred ccCCCCCCceeeeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhh--hhhhHHHHHHHHhcccccCccccc
Confidence 000011000 0 010 11333445666788899999988778866553 499999999999884 89988
Q ss_pred CCCceEEEEecCc---chHHHHHHHHHHhHhCC-CeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 536 LAPIQVMILNISK---EQIEYAKKVFNFLKSKK-FRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 536 lap~qv~Vi~~~~---~~~~~a~~i~~~Lr~~g-i~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
++|+++.|++++. .....|.+++..|...| ..|.+|+++++.|.++.+|+.+|+|+.+++|++ .++|.|+++.
T Consensus 404 ~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~-~~~g~~e~k~ 480 (500)
T COG0442 404 IAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKR-LAEGEVEVKC 480 (500)
T ss_pred cCcceeEEEEcCchhHHHHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeeccc-ccCCceeEEe
Confidence 9999999999985 24566778889999999 999999999999999999999999999999998 7889999999
No 27
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-42 Score=387.46 Aligned_cols=344 Identities=19% Similarity=0.310 Sum_probs=282.4
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CCcc-cCCCCceEe-eeCCceEEEcCCCc
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GHWE-NYKDNMFTT-KSENRFYALKPMNC 333 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~~~-~~~~~my~~-~~~~~~~~LrP~~~ 333 (783)
+.++|+++|+|.++.+++.+++.+++.+.++||++|.||.|++.++|..+ |++. .+.++||++ |.+|+.++|||+.|
T Consensus 5 ~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T 84 (412)
T PRK00037 5 QAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGT 84 (412)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCc
Confidence 35899999999999999999999999999999999999999999999874 7763 457899998 77899999999999
Q ss_pred HHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 334 PGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 334 ~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
+++++++++.. .+|+|+||+|+|||+|. +..| |.|||+|+|+|+||.++...+ .|++.++.++|+.||++
T Consensus 85 ~~~ar~~~~~~----~~p~r~~~~g~vfR~e~--~~~g--r~ref~Q~g~ei~g~~~~~~d--~E~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 85 APVVRAVIEHK----LQPFKLYYIGPMFRYER--PQKG--RYRQFHQFGVEVIGSDSPLAD--AEVIALAADILKALGLK 154 (412)
T ss_pred HHHHHHHHhCC----CCCeEEEEEcCccccCC--CCCC--cccceEEcCeeeeCCCCcchh--HHHHHHHHHHHHHcCCC
Confidence 99999988653 28999999999999998 5677 999999999999999875333 45699999999999998
Q ss_pred eEEEEeecCCC----------------CCC------------------------CChhhHHH--------------HHHH
Q psy9574 414 KIKIKLALRPN----------------KRI------------------------GENNIWDL--------------AENS 439 (783)
Q Consensus 414 ~~~i~l~~~~~----------------~~~------------------------g~~~~~~~--------------~~~~ 439 (783)
.+.+.+++... ... |....|+. ..+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (412)
T PRK00037 155 GLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEE 234 (412)
T ss_pred ceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHHHHHHHH
Confidence 77776543210 000 10112211 1245
Q ss_pred HHHHHHhcCCceeecCC----CCCcccccEEEEeecCCCC-eeeecceeeecCcccccCceeeecCCcccccEEEeeccc
Q psy9574 440 LREAISSSGVTWEEFPG----EGAFYGPKIEYHLKDSIGR-SWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAII 514 (783)
Q Consensus 440 l~~~l~~~g~~~~~~~g----~~~y~g~~~e~~~~d~~g~-~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~ 514 (783)
|.++|+..|+++.+++| .+||+|++||+... ..|. ..+||| ||||. ....+|+...|++ |++
T Consensus 235 l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~-~~g~~~~i~~G--------GRYD~-L~~~f~~~~~pav---Gfs 301 (412)
T PRK00037 235 LKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTD-DLGAQGTVCGG--------GRYDG-LVEQFGGPPTPAV---GFA 301 (412)
T ss_pred HHHHHHHcCCCEEECCCcccChhhccceEEEEEEC-CCCccceeeec--------cchhH-HHHHhCCCCCceE---EEE
Confidence 66777888888777764 68999999999863 3343 466777 99995 3666665678999 666
Q ss_pred ccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEE
Q psy9574 515 GSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIII 594 (783)
Q Consensus 515 G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~ii 594 (783)
.++||++.+|.++.. +|.||.|+|++++..++|.++++.||++|++|++|..+.++++++++|++.|+|++++
T Consensus 302 ~~le~l~~~l~~~~~-------~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~~~~a~~~gi~~~vi 374 (412)
T PRK00037 302 IGVERLLLLLEELGE-------EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSGARFVLI 374 (412)
T ss_pred EcHHHHHHHHHhcCC-------CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEE
Confidence 779999999887631 7899999999888888999999999999999999988789999999999999999999
Q ss_pred EcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 595 VGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 595 vG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
||++|+++|+|+||++ .+|+ ...++++++++.+++.
T Consensus 375 ig~~e~~~~~v~vr~~----------------------~~~~-~~~v~~~el~~~i~~~ 410 (412)
T PRK00037 375 LGEDELANGTVTVKDL----------------------RTGE-QQTVPLDELVEALKEL 410 (412)
T ss_pred EChhHHhCCeEEEEEC----------------------CCCc-eEEeeHHHHHHHHHHh
Confidence 9999999999999994 4444 4688999998887654
No 28
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-42 Score=372.99 Aligned_cols=349 Identities=17% Similarity=0.247 Sum_probs=263.8
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHH--HcCCeEeecCcccchHHHhhhCCcccCCCCceE------------------
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYK--YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFT------------------ 318 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~--~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~------------------ 318 (783)
.+|+|||.|.|+.|+++|++.|++.+. +-+..+|++|+|.+..+|+.|||.+.|.+-|-.
T Consensus 29 ~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP 108 (539)
T PRK14894 29 LQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCP 108 (539)
T ss_pred cccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCC
Confidence 889999999999999999999999884 567889999999999999999999999774332
Q ss_pred ------------------ee---eC--CceEEEcCCCcHHHHHHHhcccccCC-CCCceEEEecceeecCCCCCCCCccc
Q psy9574 319 ------------------TK---SE--NRFYALKPMNCPGHIQIYNSNFHSYR-DLPLRFGEFGQCHRNESSGSLHGMMR 374 (783)
Q Consensus 319 ------------------~~---~~--~~~~~LrP~~~~~~~~~~~~~~~s~~-~LPlr~~~~g~~fR~E~~g~~~GL~R 374 (783)
+. .+ +...+|||+++++++..|++.+...+ .||+.++|+|++||||.+ |++||+|
T Consensus 109 ~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIs-Pr~~l~R 187 (539)
T PRK14894 109 NCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEIN-PRNFLFR 187 (539)
T ss_pred CCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccC-CCCceee
Confidence 11 01 24599999999999999998777555 799999999999999997 9999999
Q ss_pred ceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC--CCCCChhhHHHHHHHHHHHHHhcCCcee
Q psy9574 375 TRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN--KRIGENNIWDLAENSLREAISSSGVTWE 452 (783)
Q Consensus 375 ~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~--~~~g~~~~~~~~~~~l~~~l~~~g~~~~ 452 (783)
+|||+|.|++.|+.|+...+++...+......+.++|++.-.+++...+. ...-+...|| ++|.
T Consensus 188 ~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D--------------~e~~ 253 (539)
T PRK14894 188 VREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFD--------------LMYD 253 (539)
T ss_pred cccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEE--------------EEEE
Confidence 99999999999999998888888899999999999999755555432221 0111122232 1100
Q ss_pred ecCCCCCcccccEEE-EeecCC-----CCeeeec----ceeeecCcccccCceeeec-CCcccccEEEeecccccHHHHH
Q psy9574 453 EFPGEGAFYGPKIEY-HLKDSI-----GRSWQCG----TIQIDFSMPHRLGAEYIAE-NNTRKTPVMLHRAIIGSLERFI 521 (783)
Q Consensus 453 ~~~g~~~y~g~~~e~-~~~d~~-----g~~~~~g----~~~lD~~~~~r~d~~y~~~-~g~~~~p~~i~~~~~G~ieRli 521 (783)
. |. +| ..|. .+.+.. .+.-..+ +..+..+.....++.|.+. .|+.-.|+||. .++| ++|++
T Consensus 254 ~-p~----~G-w~E~~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViE-pS~G-~dR~~ 325 (539)
T PRK14894 254 Y-PN----IG-VQEIEGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIE-PSAG-VGRCM 325 (539)
T ss_pred C-CC----CC-eEEEEEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceee-cCcc-hhHHH
Confidence 0 00 00 0110 000000 0000000 0011111112334455543 45566799999 6778 99999
Q ss_pred HHHHHh--------------------------------------------------------------------------
Q psy9574 522 AILVEN-------------------------------------------------------------------------- 527 (783)
Q Consensus 522 ~~LlE~-------------------------------------------------------------------------- 527 (783)
.+++++
T Consensus 326 ~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (539)
T PRK14894 326 LAVMCEGYAEELTKAIPGEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIE 405 (539)
T ss_pred HHHHHHHHhhhhhcccccccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 988743
Q ss_pred ----------------cCC--CCCCCCCCceEEEEecCcc---hHHHHHHHHHHhHhCCC-eEEEECCCccHHHHHHHhh
Q psy9574 528 ----------------YSG--AMPLWLAPIQVMILNISKE---QIEYAKKVFNFLKSKKF-RVEVDLRNEKIAYKIRLHS 585 (783)
Q Consensus 528 ----------------~~~--~~P~~lap~qv~Vi~~~~~---~~~~a~~i~~~Lr~~gi-~v~~d~~~~~l~~k~~~A~ 585 (783)
+.+ .||+||||+||+|+|++++ ..+||.+|++.|+++|+ +|.+|+ ++++|+|+|+|+
T Consensus 406 ~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVaVLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dd-sesIGKKyRraD 484 (539)
T PRK14894 406 LGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVAVFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDD-TGAIGKLYRRQD 484 (539)
T ss_pred cccccccccccCCCcccceecCCCcCCCCceEEEEeccccccchHHHHHHHHHHHHHCCCceEEEcC-CCCHhHHHHhhh
Confidence 223 4669999999999999973 45999999999999998 999999 679999999999
Q ss_pred cCCCCEEEEE-------cccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 586 LEKLPYIIIV-------GNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 586 ~~gip~~iiv-------G~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
.+|+||+|+| |++|+++++||||+ +++..+..|+++++++.+.+..
T Consensus 485 eiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~-----------------------RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 485 EIGTPFCITVDFDTIGQGKDPALAGTVTVRD-----------------------RDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred ccCCCEEEEEeccccccccchhhcCeEEEEE-----------------------eCCCeEEEEEHHHHHHHHHHHh
Confidence 9999999999 99999999999999 8888889999999999987653
No 29
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=5.4e-42 Score=365.99 Aligned_cols=267 Identities=16% Similarity=0.306 Sum_probs=219.5
Q ss_pred hhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccC
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENY 312 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~ 312 (783)
.++++||++||++++||++++. ++|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|++||||+.|
T Consensus 15 ~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~ 94 (297)
T cd00770 15 DFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKF 94 (297)
T ss_pred CCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccC
Confidence 5678999999999999998753 888999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC---CCCCCcccceeEEEeceeEecCc
Q psy9574 313 KDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS---GSLHGMMRTRSFIQDDGHIFCTK 389 (783)
Q Consensus 313 ~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~---g~~~GL~R~ReF~q~d~~~f~~~ 389 (783)
.++||+++. ++++|+||+|++++.++++++.||++||+|++++|+|||+|.+ +..+||+|+|||+|.|+++||++
T Consensus 95 ~~~~f~v~~--~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~ 172 (297)
T cd00770 95 DEQLYKVEG--EDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKP 172 (297)
T ss_pred hhcccEecC--CCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECc
Confidence 999999943 7899999999999999999999999999999999999999987 23599999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEe
Q psy9574 390 SQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHL 469 (783)
Q Consensus 390 ~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~ 469 (783)
+++.+++.++++++.++|+.|||+...+.+++++. |.... ..-.+|+++
T Consensus 173 e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl---~~~~~----------------------------~~~d~e~~~ 221 (297)
T cd00770 173 EESWEELEELISNAEEILQELGLPYRVVNICTGDL---GFAAA----------------------------KKYDIEAWM 221 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccc---cCchh----------------------------hheeeheec
Confidence 99999999999999999999999976666666542 11100 001123333
Q ss_pred ecCC--CCeeeecceeeecCcccccCceeeecC-CcccccEEEeecccccHHHHHHHHHHhcCC----CCC-CCCCCc
Q psy9574 470 KDSI--GRSWQCGTIQIDFSMPHRLGAEYIAEN-NTRKTPVMLHRAIIGSLERFIAILVENYSG----AMP-LWLAPI 539 (783)
Q Consensus 470 ~d~~--g~~~~~g~~~lD~~~~~r~d~~y~~~~-g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P-~~lap~ 539 (783)
+... +....|+ .+.||+ ++|++++|.+.+ |+.+.++++.+.. ++++|++++|+|++++ .|| ..|+||
T Consensus 222 p~~~~~~e~~s~s-~~~d~~-s~r~~i~y~~~~~~~~~~~~~~~~~~-~~~~R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 222 PGQGKYREISSCS-NCTDFQ-ARRLNIRYRDKKDGKKQYVHTLNGTA-LATPRTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred CCCCCeEEEEEcc-CccChh-hhhcCcEEecCCCCCeeeeeEecccc-hHHHHHHHHHHHhCcCCCCcEeCchhhccc
Confidence 2211 1112232 246888 699999999985 7766666644333 3499999999999874 344 777876
No 30
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=2.4e-40 Score=370.25 Aligned_cols=332 Identities=22% Similarity=0.349 Sum_probs=274.8
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CC-cccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GH-WENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~-~~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
.++|+.+|+|.++.+++.|++.+++.+.++||++|.||.|++.++|..+ |. .+.+.++||++ |.+|+.++|||+.|+
T Consensus 2 ~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~ 81 (397)
T TIGR00442 2 APRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTA 81 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcH
Confidence 4789999999999999999999999999999999999999999999874 43 44467899998 788999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
+++++++... ++.++|+|+||+|+|||+|. +..| |.|||+|+|+|+||.++...+ .|++.++.++++.||+++
T Consensus 82 ~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~--~~~g--r~ref~Q~g~eiig~~~~~~d--~E~i~l~~e~l~~lg~~~ 154 (397)
T TIGR00442 82 PVARAVIENK-LLLPKPFKLYYIGPMFRYER--PQKG--RYRQFHQFGVEVIGSDSPLAD--AEIIALAAEILKELGIKD 154 (397)
T ss_pred HHHHHHHhcc-cccCCCeEEEEEcCeecCCC--CCCC--cccceEEcCeeeeCCCCHHHH--HHHHHHHHHHHHHcCCCc
Confidence 9999998664 35689999999999999998 5667 999999999999999876444 678999999999999988
Q ss_pred EEEEeecCCC----------------C---CCCChhh--H------------------------------HHHH---HHH
Q psy9574 415 IKIKLALRPN----------------K---RIGENNI--W------------------------------DLAE---NSL 440 (783)
Q Consensus 415 ~~i~l~~~~~----------------~---~~g~~~~--~------------------------------~~~~---~~l 440 (783)
+.+.+|++.. + .++.... + ..+. +.+
T Consensus 155 ~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 234 (397)
T TIGR00442 155 FTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFEEL 234 (397)
T ss_pred eEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHHHHH
Confidence 9999987642 1 1111100 0 0111 334
Q ss_pred HHHHHhcCCceeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeeccccc
Q psy9574 441 REAISSSGVTWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGS 516 (783)
Q Consensus 441 ~~~l~~~g~~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ 516 (783)
.+.|+..|+.+.+++ |.+||+|+.|++.+.+.-+...+|+| ||||- +....|+...|++ |+..+
T Consensus 235 ~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~G--------GRYD~-L~~~f~~~~~~av---Gfs~~ 302 (397)
T TIGR00442 235 KELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGG--------GRYDG-LVEELGGPPTPAV---GFAIG 302 (397)
T ss_pred HHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeec--------cchHH-HHHHhCCCCCceE---Eeeec
Confidence 556677788777666 57899999999987542223456777 99995 3555555568998 66667
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEc
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVG 596 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG 596 (783)
+||++.++.+. +.+|.|.+|.+|.|++++++...+|.+++..||++|++|+++....++++++++|+..|+|++++||
T Consensus 303 ~~~l~~~l~~~--~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~a~~~g~~~~i~ig 380 (397)
T TIGR00442 303 IERLLLLLEEL--GLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQLKYADKLGARFAVILG 380 (397)
T ss_pred HHHHHHHHHhc--CCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 99999998774 5677778899999999998888899999999999999999998888999999999999999999999
Q ss_pred ccccccCceeEEEe
Q psy9574 597 NKELCENKITEREI 610 (783)
Q Consensus 597 ~~e~~~~~V~vr~~ 610 (783)
++|.++++|+||++
T Consensus 381 ~~e~~~~~v~vrnl 394 (397)
T TIGR00442 381 EDELANGTVTLKDL 394 (397)
T ss_pred hhHHhCCeEEEEeC
Confidence 99999999999994
No 31
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=1.4e-41 Score=356.68 Aligned_cols=245 Identities=22% Similarity=0.369 Sum_probs=213.9
Q ss_pred HHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHh-hhCCcccCCCCceEe-ee
Q psy9574 244 RKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWK-KTGHWENYKDNMFTT-KS 321 (783)
Q Consensus 244 ~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~-~sg~~~~~~~~my~~-~~ 321 (783)
..|++++|++++. .++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|. .||||+.|.++||++ +.
T Consensus 7 ~~l~~~~~~~d~~-~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~ 85 (261)
T cd00778 7 TEVITKAELIDYG-PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHG 85 (261)
T ss_pred HHHHHHhCCcccC-CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEec
Confidence 4678888988876 58899999999999999999999999999999999999999999985 599999999999998 44
Q ss_pred CC----ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHH
Q psy9574 322 EN----RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEI 396 (783)
Q Consensus 322 ~~----~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~ 396 (783)
++ ++++|+||+|++++.++++++.||++||+|+||+++|||+|.+ +.+||+|+|||+|.|+| +||+++++.+++
T Consensus 86 ~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~-~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~ 164 (261)
T cd00778 86 GLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK-TTRPFLRTREFLWQEGHTAHATEEEAEEEV 164 (261)
T ss_pred CCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCC-CCCceeEeeeeeeeceeeccCCHHHHHHHH
Confidence 43 5899999999999999999999999999999999999999998 56999999999999998 588999999999
Q ss_pred HHHHHHHHHHHhhc-CCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCC
Q psy9574 397 VVFNELVHKVYNEF-GFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGR 475 (783)
Q Consensus 397 ~e~~~~~~~i~~~l-Gl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~ 475 (783)
.++++++.++|+.| ||+ +.+........+ .++.+..++|+.++ .|+
T Consensus 165 ~~~~~~~~~i~~~llgl~-~~~~~~~~~d~~------------------------------~~a~~~~~ie~~~p--~~~ 211 (261)
T cd00778 165 LQILDLYKEFYEDLLAIP-VVKGRKTEWEKF------------------------------AGADYTYTIEAMMP--DGR 211 (261)
T ss_pred HHHHHHHHHHHHHhCCCe-EEEecCCccccC------------------------------CCCccceEEEEEee--CCC
Confidence 99999999999999 998 333322111122 23444556899888 599
Q ss_pred eeeecce-eeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHH
Q psy9574 476 SWQCGTI-QIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVE 526 (783)
Q Consensus 476 ~~~~g~~-~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE 526 (783)
.+++|++ ++|+++|+||+++|.+++|+.+.| |++++|+.+|+|++|+.
T Consensus 212 ~~ev~s~~~l~~~~s~r~~i~y~~~~g~~~~~---h~~~~g~~~R~i~ali~ 260 (261)
T cd00778 212 ALQSGTSHNLGQNFSKAFDIKYQDKDGQKEYV---HQTSWGISTRLIGAIIM 260 (261)
T ss_pred EEEEEeccccccccchhcCCEEECCCCCCcCc---EEecccHHHHHHHHHHh
Confidence 9999999 699999999999999999987776 55888988999999974
No 32
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-41 Score=377.91 Aligned_cols=266 Identities=17% Similarity=0.348 Sum_probs=224.6
Q ss_pred hhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCccc
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWEN 311 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~ 311 (783)
.++++||++||+++|||+|++. ++|++.|+|.|++++++|++++++.+. +.||++|.||.|.+.++|.+||||+.
T Consensus 133 ~f~~~dH~ei~~~l~l~d~~~~~~~~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~ 212 (425)
T PRK05431 133 DFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPK 212 (425)
T ss_pred CCCCCCHHHHHhhcCceecccccccCCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCcccc
Confidence 3467899999999999999863 888999999999999999999999998 99999999999999999999999999
Q ss_pred CCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCC---CCCCcccceeEEEeceeEecC
Q psy9574 312 YKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSG---SLHGMMRTRSFIQDDGHIFCT 388 (783)
Q Consensus 312 ~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g---~~~GL~R~ReF~q~d~~~f~~ 388 (783)
|.++||+++ +++++|+||+|++++.++++++.||++||+|++++|+|||+|.++ +++||+|+|||+|.|+|+||+
T Consensus 213 f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~ 290 (425)
T PRK05431 213 FEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTK 290 (425)
T ss_pred chhhceEec--CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEEC
Confidence 999999994 578999999999999999999999999999999999999999964 479999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCC----CChhhHHHHHHHHHHHHHhcCCceeecCCCCCccccc
Q psy9574 389 KSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRI----GENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPK 464 (783)
Q Consensus 389 ~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~----g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~ 464 (783)
++++.+++.++++++.++|+.|||++..+.+++++.... .+.+.| .|+.+.|
T Consensus 291 ~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w--------------------~p~~~~~---- 346 (425)
T PRK05431 291 PEDSYAELEELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVW--------------------LPSQNTY---- 346 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHh--------------------CcccCCe----
Confidence 999999999999999999999999966667777653211 111222 2333333
Q ss_pred EEEEeecCCCCeeeecceeeecCcccccCceeeec-CCcccccEEEeecccccHHHHHHHHHHhcCC-----CCCCCCCC
Q psy9574 465 IEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAE-NNTRKTPVMLHRAIIGSLERFIAILVENYSG-----AMPLWLAP 538 (783)
Q Consensus 465 ~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~-~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~-----~~P~~lap 538 (783)
.| ...|+ ++.||| ++|++++|.+. +|+...++++.++.+ +++|+|+|++|+|++ .||..|+|
T Consensus 347 ~e---------v~s~s-nc~d~q-srr~~i~~~~~~~~~~~~~htln~t~~-a~~R~l~ailE~~q~~~g~i~iP~~l~p 414 (425)
T PRK05431 347 RE---------ISSCS-NCTDFQ-ARRANIRYRDEGDGKPELVHTLNGSGL-AVGRTLVAILENYQQADGSVTIPEVLRP 414 (425)
T ss_pred eE---------EEEec-Cccchh-hhhcCcEEecCCCCceeEEEEeCCchh-hHHHHHHHHHHHCCCCCCcEECChhhhc
Confidence 11 22233 346887 79999999988 777666666553333 499999999999984 79999999
Q ss_pred ce
Q psy9574 539 IQ 540 (783)
Q Consensus 539 ~q 540 (783)
|.
T Consensus 415 y~ 416 (425)
T PRK05431 415 YM 416 (425)
T ss_pred cc
Confidence 85
No 33
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=1.2e-40 Score=373.38 Aligned_cols=363 Identities=20% Similarity=0.292 Sum_probs=260.5
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCceEe---------e--------
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT---------K-------- 320 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~---------~-------- 320 (783)
.+|+|||+|.|+.++++|++.|++.|. ..|+.+|++|+|.+.++|+.||||+.|.+-|... |
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~~~~~~~~~RaD~l~e~~~~ 105 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVDCKSCKERFRADHLIEEKLG 105 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceeecCCCCCEecchHHHHHHhh
Confidence 899999999999999999999999995 7789999999999999999999999999865541 0
Q ss_pred ----------------------------------------------eCCceEEEcCCCcHHHHHHHhcccccCC-CCCce
Q psy9574 321 ----------------------------------------------SENRFYALKPMNCPGHIQIYNSNFHSYR-DLPLR 353 (783)
Q Consensus 321 ----------------------------------------------~~~~~~~LrP~~~~~~~~~~~~~~~s~~-~LPlr 353 (783)
.++...+|||+++++++..|++.+.+.+ .||+.
T Consensus 106 ~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~klPfg 185 (551)
T TIGR00389 106 KRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRKLPFG 185 (551)
T ss_pred hhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCCCCee
Confidence 0234689999999999999998877555 79999
Q ss_pred EEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhh
Q psy9574 354 FGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNI 432 (783)
Q Consensus 354 ~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~ 432 (783)
++|+|++||||.+ |+.||+|+|||+|+|++.|+.|+ .....+..+.+....++.+=. ....+.....+.+-+.+.
T Consensus 186 iaQiGk~fRNEIs-Pr~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~~~l~~~~~---~~~~~~eav~~g~i~n~~ 261 (551)
T TIGR00389 186 VAQIGKSFRNEIS-PRNGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDILPLLPRQM---QESGIGEAVESGMIENET 261 (551)
T ss_pred ehhhhHhhhcccC-cccceEEeehhhhchhheecCcccccchhhHHHHHHHHhhccchh---hhccHHHHHHhcccchHH
Confidence 9999999999997 99999999999999999999995 355555555544433332200 000010100011111122
Q ss_pred HHHHHHHHHHHHHhcCCcee------ecCCCCCccc-ccEEEEeecCCCCeeeeccee--eecCcc-----cccCceeee
Q psy9574 433 WDLAENSLREAISSSGVTWE------EFPGEGAFYG-PKIEYHLKDSIGRSWQCGTIQ--IDFSMP-----HRLGAEYIA 498 (783)
Q Consensus 433 ~~~~~~~l~~~l~~~g~~~~------~~~g~~~y~g-~~~e~~~~d~~g~~~~~g~~~--lD~~~~-----~r~d~~y~~ 498 (783)
...........|...|++-+ ..+.+-|.|. --+|+.+.-..|-.- |-|+. -||.|. ..=++.|.+
T Consensus 262 ~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E-~~G~a~R~~yDL~~H~~~s~~~l~~~~ 340 (551)
T TIGR00389 262 LGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIE-CVGIADRGDYDLTQHSKFSGKSLSVFD 340 (551)
T ss_pred HHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCCcEE-EEEeccccccChHHHHHhhCCCeEEEe
Confidence 22223444556666776521 1222222222 223333222333211 22222 333331 011122222
Q ss_pred c-------------------------------------------------------------------CCcccccEEEee
Q psy9574 499 E-------------------------------------------------------------------NNTRKTPVMLHR 511 (783)
Q Consensus 499 ~-------------------------------------------------------------------~g~~~~p~~i~~ 511 (783)
. .|++..|+|||
T Consensus 341 ~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIe- 419 (551)
T TIGR00389 341 KLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIE- 419 (551)
T ss_pred ecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEE-
Confidence 2 36777999999
Q ss_pred cccccHHHHHHHHHHhcCC------------CCCCCCCCceEEEEecCcc--hHHHHHHHHHHhHhCCCeEEEECCCccH
Q psy9574 512 AIIGSLERFIAILVENYSG------------AMPLWLAPIQVMILNISKE--QIEYAKKVFNFLKSKKFRVEVDLRNEKI 577 (783)
Q Consensus 512 ~~~G~ieRli~~LlE~~~~------------~~P~~lap~qv~Vi~~~~~--~~~~a~~i~~~Lr~~gi~v~~d~~~~~l 577 (783)
.++| ++|++++|+|+..+ .||+|+||++|+|+|++++ ...+|.+|++.||++|++|++|+++ ++
T Consensus 420 pS~G-IdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~s~-sI 497 (551)
T TIGR00389 420 PSFG-IDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDDSG-TI 497 (551)
T ss_pred cccC-HHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC-CH
Confidence 4567 99999999986543 6899999999999999854 8899999999999999999999976 59
Q ss_pred HHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 578 AYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 578 ~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
|+|+++|++.|+|++|+||++|+++|+|+||+ .+......++++++.+.+.+
T Consensus 498 GKq~rrADeiGiPf~IIIG~~EledgtVTIRd-----------------------RdT~eQ~~I~ldeL~~~L~e 549 (551)
T TIGR00389 498 GKRYRRADEIGTPFCVTIDFETLEDETVTIRE-----------------------RDSMKQVRVKIKELPSYIKK 549 (551)
T ss_pred HHHHHHHHHcCCCEEEEECCchhhCCEEEEEE-----------------------CCCCceEEeeHHHHHHHHHh
Confidence 99999999999999999999999999999999 44444467888888776654
No 34
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=1.2e-39 Score=374.08 Aligned_cols=345 Identities=14% Similarity=0.143 Sum_probs=274.7
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
+.++|++||+|..+.++++|++.+++.|++|||.+|.||+|++.++|.. .|.. .++||.| |++|+.++|||+.|+
T Consensus 328 k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~gGr~LaLRPDlTv 404 (763)
T PLN02972 328 KIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTV 404 (763)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCCCCEEEeCCCChH
Confidence 5699999999999999999999999999999999999999999999976 3432 3689998 889999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhH-HHHHHHHHHHHHHHHhhcCCe
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQI-KNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~-~~e~~e~~~~~~~i~~~lGl~ 413 (783)
|++|+++.+. ..|+|+||+|+|||+|+ |++| |+|||+|+|++++|..+.. .+ .|++.++.++++.||++
T Consensus 405 PiAR~vA~n~----~~p~KrYyiG~VFR~e~--pqkG--R~REF~Q~G~EIIG~~~~~~aD--AEVI~La~E~L~~LGi~ 474 (763)
T PLN02972 405 PFARYVAMNG----ITSFKRYQIAKVYRRDN--PSKG--RYREFYQCDFDIAGVYEPMGPD--FEIIKVLTELLDELDIG 474 (763)
T ss_pred HHHHHHHhCC----CCcceEEEeccEEecCC--CCCC--CCccceEEeEEEEcCCCcchhh--HHHHHHHHHHHHhCCCC
Confidence 9999998653 24899999999999998 7999 9999999999999975442 33 56799999999999998
Q ss_pred eEEEEeecCCC-----CCC--------------------------------------------------CC-hhhHHH--
Q psy9574 414 KIKIKLALRPN-----KRI--------------------------------------------------GE-NNIWDL-- 435 (783)
Q Consensus 414 ~~~i~l~~~~~-----~~~--------------------------------------------------g~-~~~~~~-- 435 (783)
++.|++|++.. ..+ |. .+..+.
T Consensus 475 df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~ 554 (763)
T PLN02972 475 TYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLR 554 (763)
T ss_pred ceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 89999997531 000 00 000110
Q ss_pred --------------HH---HHHHHHHHhcCC--ceeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCccccc
Q psy9574 436 --------------AE---NSLREAISSSGV--TWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRL 492 (783)
Q Consensus 436 --------------~~---~~l~~~l~~~g~--~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~ 492 (783)
+. +.+.+.|+..|+ .+.+++ |++||+|++||+...+ .+...++|| |||
T Consensus 555 ~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g-~~~gsIagG--------GRY 625 (763)
T PLN02972 555 QEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKG-AQVGSIAAG--------GRY 625 (763)
T ss_pred HhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcC-Cccceeeec--------CCc
Confidence 00 223344555666 244444 7899999999987654 233467787 999
Q ss_pred CceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCC---CCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEE
Q psy9574 493 GAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPL---WLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVE 569 (783)
Q Consensus 493 d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~---~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~ 569 (783)
|- ....+|+...|++ |+..++||++.+|.+. +..+. .-++.+|+|++.+++...++.++++.||++||+++
T Consensus 626 D~-Lv~~FgG~~vPAV---GFSiGIERL~~~L~~~--~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE 699 (763)
T PLN02972 626 DN-LVGMFSGKQVPAV---GVSLGIERVFAIMEQQ--EEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAE 699 (763)
T ss_pred hh-HHHhcCCCCCCEE---EEEecHHHHHHHHHHc--ccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEE
Confidence 96 3666766778999 4444599999887553 21111 12457899999998888999999999999999999
Q ss_pred EECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHH
Q psy9574 570 VDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYL 649 (783)
Q Consensus 570 ~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~ 649 (783)
++. ..++++++++|+..|+|+++|+|++|+++|+|+||+| .+|++ ..+++++++..
T Consensus 700 ~~~-~~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL----------------------~tgeq-~~V~~delv~~ 755 (763)
T PLN02972 700 YKV-STRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNL----------------------EAGVE-EEVDRTCFVQE 755 (763)
T ss_pred EeC-CCCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEEC----------------------CCCcc-eEeeHHHHHHH
Confidence 876 5789999999999999999999999999999999996 66665 57789998887
Q ss_pred HHHh
Q psy9574 650 AEKE 653 (783)
Q Consensus 650 ~~~~ 653 (783)
++..
T Consensus 756 l~~~ 759 (763)
T PLN02972 756 LKAE 759 (763)
T ss_pred HHHH
Confidence 7644
No 35
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=5.4e-41 Score=372.43 Aligned_cols=269 Identities=19% Similarity=0.357 Sum_probs=220.4
Q ss_pred hhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccC
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENY 312 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~ 312 (783)
+++++||++||+++|||+++.. |+|++.|+|.|++++++|++++++.+.+.||++|.||.|.+.++|.+||||+.|
T Consensus 136 ~~~~~~H~~l~~~l~l~d~~~~~~~~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f 215 (418)
T TIGR00414 136 DFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKF 215 (418)
T ss_pred CCCCCCHHHHHHhCCCccccccccCCCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccc
Confidence 4567899999999999999763 788999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCC---CCCCcccceeEEEeceeEecCc
Q psy9574 313 KDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSG---SLHGMMRTRSFIQDDGHIFCTK 389 (783)
Q Consensus 313 ~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g---~~~GL~R~ReF~q~d~~~f~~~ 389 (783)
.++||.++ +++++|+||+|++++.++++++.||++||+|++++|+|||+|.++ ..+||+|+|||+|.|+++||++
T Consensus 216 ~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~ 293 (418)
T TIGR00414 216 EEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKP 293 (418)
T ss_pred cccceEec--CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCH
Confidence 99999984 467999999999999999999999999999999999999999952 3679999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEe
Q psy9574 390 SQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHL 469 (783)
Q Consensus 390 ~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~ 469 (783)
+++.+++.++++++.++|+.|||++..+.+++++... +....+| ++ .+.|+.+.|
T Consensus 294 e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~dlg~-~a~~~yd--------------iE-~w~p~~~~~--------- 348 (418)
T TIGR00414 294 EESAEELEEMTSDAEQILQELELPYRVVNLCSGDLGF-SAAKKYD--------------LE-VWMPGQNTY--------- 348 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEEecCcccccc-CHhhhhh--------------HH-HhCCCcCce---------
Confidence 9999999999999999999999997777777765321 1111111 00 012332222
Q ss_pred ecCCCCeeeecceeeecCcccccCceeeecCCcc-cccEEEeecccccHHHHHHHHHHhcCC-----CCCCCCCCc
Q psy9574 470 KDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTR-KTPVMLHRAIIGSLERFIAILVENYSG-----AMPLWLAPI 539 (783)
Q Consensus 470 ~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~-~~p~~i~~~~~G~ieRli~~LlE~~~~-----~~P~~lap~ 539 (783)
+....|+ ++.||+ ++|++++|.+.++++ ..++++. +..++++|+|+||+|++++ .||..|+||
T Consensus 349 ----~ev~s~s-n~~d~q-srr~~i~y~~~~~~~~~~vh~ln-~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 349 ----REISSCS-NCTDFQ-ARRLNIRYKDKNKGKNKYVHTLN-GTALAIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred ----EEEEEEc-CcchHh-HHhCCcEEECCCCCceEEEEeec-CcchHHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 1122344 346887 699999999876543 4444433 3333599999999999874 699999997
No 36
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=1e-40 Score=367.91 Aligned_cols=287 Identities=16% Similarity=0.280 Sum_probs=235.1
Q ss_pred CCCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHH
Q psy9574 207 GNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRK 282 (783)
Q Consensus 207 ~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~ 282 (783)
+|++++.++|+||.++... +++||+.||++|+||+|.+. +.++++|.+.|++|.++|++|+++
T Consensus 120 ~de~~n~~vr~~g~~~~~~-------------~~~dH~~Lg~~l~l~d~~~~~~vsG~~~y~l~g~ga~L~~AL~~y~ld 186 (448)
T PLN02678 120 NDEANNAVVRTWGEKRQEP-------------KLKNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLLNQALINFGLA 186 (448)
T ss_pred CCcCCCEEEEEEcCCCCCC-------------CCCCHHHHHhhccCccchhhhhhcCceeEEECCHHHHHHHHHHHHHHH
Confidence 3667788899999866321 56899999999999999853 444555666999999999999999
Q ss_pred HHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceee
Q psy9574 283 IYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHR 362 (783)
Q Consensus 283 ~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR 362 (783)
.+.++||++|.||.|.+.++|..||||++|.++||.++.++++++|.||+|++++.++++.+.+|++||+|++++|+|||
T Consensus 187 ~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR 266 (448)
T PLN02678 187 FLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFR 266 (448)
T ss_pred HHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCceeEEeccccc
Confidence 99999999999999999999999999999999999996556789999999999999999999999999999999999999
Q ss_pred cCCC--C-CCCCcccceeEEEeceeEecCchh--HHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHH
Q psy9574 363 NESS--G-SLHGMMRTRSFIQDDGHIFCTKSQ--IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAE 437 (783)
Q Consensus 363 ~E~~--g-~~~GL~R~ReF~q~d~~~f~~~~~--~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~ 437 (783)
+|++ | ..+||+|+|||+|.|+++||.|++ +.+++.++++++.++|+.|||++..+.+++.+..+ .
T Consensus 267 ~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgdlg~---~------- 336 (448)
T PLN02678 267 KEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALND---A------- 336 (448)
T ss_pred cccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCC---c-------
Confidence 9997 3 789999999999999999999998 99999999999999999999997777888766422 1
Q ss_pred HHHHHHHHhcCCceeecCCCCCcccccEEEEeecCC--CCeeeecceeeecCcccccCceeeec---CCcccccEEEeec
Q psy9574 438 NSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSI--GRSWQCGTIQIDFSMPHRLGAEYIAE---NNTRKTPVMLHRA 512 (783)
Q Consensus 438 ~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~--g~~~~~g~~~lD~~~~~r~d~~y~~~---~g~~~~p~~i~~~ 512 (783)
++-.-.+|++++... +..+.|+ ++.||| ++|.+++|.+. +|+..++++++++
T Consensus 337 ---------------------a~~~yDiE~W~P~~~~y~EvsS~S-nc~D~Q-aRRl~iryr~~~~~~~~~~~vHTLNgt 393 (448)
T PLN02678 337 ---------------------AAKKYDLEAWFPASKTYRELVSCS-NCTDYQ-SRRLEIRYGQKKSNEQTKQYVHLLNST 393 (448)
T ss_pred ---------------------hhhceeeEeeccccCCceEEeeec-ccccHh-hhcccceecccccCCCCceeEEecCCc
Confidence 111112444443321 2234455 578999 79999999976 3445555555533
Q ss_pred ccccHHHHHHHHHHhcCC----CCCCCCCCce
Q psy9574 513 IIGSLERFIAILVENYSG----AMPLWLAPIQ 540 (783)
Q Consensus 513 ~~G~ieRli~~LlE~~~~----~~P~~lap~q 540 (783)
.+ .+.|+|.||+|+|+. .+|..|.||-
T Consensus 394 ~l-A~~R~l~AiLEn~Q~~dgi~iP~vL~pym 424 (448)
T PLN02678 394 LT-ATERTLCCILENYQTEDGVRVPEVLQPFM 424 (448)
T ss_pred hh-HHHHHHHHHHHhCcCCCCeECChhhhhhc
Confidence 22 399999999999974 6788887773
No 37
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-39 Score=363.73 Aligned_cols=325 Identities=20% Similarity=0.291 Sum_probs=260.4
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-eeCCceEEEcCCCcHH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KSENRFYALKPMNCPG 335 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~ 335 (783)
.++|++||+|..+.+++.|++.+++.|+++||++|.||+|++.++|.. +|..+...++||++ |.+|+.++|||+.|++
T Consensus 6 ~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~ 85 (423)
T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIP 85 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHH
Confidence 589999999999999999999999999999999999999999999976 46556667899998 8899999999999999
Q ss_pred HHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeE
Q psy9574 336 HIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKI 415 (783)
Q Consensus 336 ~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~ 415 (783)
++++++.+. ..++|+|+||+|+|||+|. +++| |.|||+|+|+++||.++...+ .|++.++.++++.||+ .+
T Consensus 86 iaR~va~~~--~~~~p~r~~y~g~vfR~~~--~~~g--r~rE~~Q~g~EiiG~~~~~ad--aEvi~la~~~l~~lg~-~~ 156 (423)
T PRK12420 86 FAKVVAMNP--NIRLPFKRYEIGKVFRDGP--IKQG--RFREFIQCDVDIVGVESVMAE--AELMSMAFELFRRLNL-EV 156 (423)
T ss_pred HHHHHHhCc--CCCCCeeEEEEcceECCCC--CCCC--ccceeEECCeeeECCCCCccc--HHHHHHHHHHHHHCCC-CE
Confidence 999998753 2478999999999999998 6888 999999999999998776544 6779999999999999 58
Q ss_pred EEEeecCCC----------------------CC---CCChh----------------------------hHHH-------
Q psy9574 416 KIKLALRPN----------------------KR---IGENN----------------------------IWDL------- 435 (783)
Q Consensus 416 ~i~l~~~~~----------------------~~---~g~~~----------------------------~~~~------- 435 (783)
.|.+|++.. .. .+..+ ..+.
T Consensus 157 ~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 236 (423)
T PRK12420 157 TIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFNN 236 (423)
T ss_pred EEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhccC
Confidence 999986320 00 00000 0000
Q ss_pred -----H---HHHHHHHHHhcCCc--eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCC
Q psy9574 436 -----A---ENSLREAISSSGVT--WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENN 501 (783)
Q Consensus 436 -----~---~~~l~~~l~~~g~~--~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g 501 (783)
+ ...+.+.|+..|+. +.+++ |.+||+|+.||+...+......+||| ||||- +....+
T Consensus 237 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~G--------GRYD~-L~~~f~ 307 (423)
T PRK12420 237 PLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSG--------GRYDN-IIGAFR 307 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCC--------ccHHH-HHHHhC
Confidence 0 13344556667764 34444 77999999999987652222356777 99995 244543
Q ss_pred c--ccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHh-CCCeEEEECCCccHH
Q psy9574 502 T--RKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKS-KKFRVEVDLRNEKIA 578 (783)
Q Consensus 502 ~--~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~-~gi~v~~d~~~~~l~ 578 (783)
+ ...|++ |+.-+++|++.++... +. +. .|.||+|+|+++. ..|.++++.||+ +|++|++|.++.+++
T Consensus 308 ~~~~~~pAv---Gfa~~~~~l~~~l~~~--~~-~~--~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~ 377 (423)
T PRK12420 308 GDDMNYPTV---GISFGLDVIYTALSQK--ET-IS--STADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELAGRKLK 377 (423)
T ss_pred CCCCCCCce---eEEEcHHHHHHHHHhc--CC-CC--CCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecCCcCHH
Confidence 3 357888 4444599999887553 22 22 5789999998754 369999999999 999999999989999
Q ss_pred HHHHHhhcCCCCEEEEEcccccccCceeEEEe
Q psy9574 579 YKIRLHSLEKLPYIIIVGNKELCENKITEREI 610 (783)
Q Consensus 579 ~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~ 610 (783)
+++++|.+.|+|++++||++|.++++|+||++
T Consensus 378 ~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~ 409 (423)
T PRK12420 378 KALNYANKENIPYVLIIGEEEVSTGTVMLRNM 409 (423)
T ss_pred HHHHHHHHcCCCEEEEEChhHHhcCeEEEEEC
Confidence 99999999999999999999999999999994
No 38
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=3e-39 Score=366.29 Aligned_cols=365 Identities=18% Similarity=0.271 Sum_probs=255.3
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCceEe---------e-------
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT---------K------- 320 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~---------~------- 320 (783)
..+|+|||.|.|+.|+++|++.|++.|. ..++.+|++|+|.+..+|+.|||.++|.+-|... |
T Consensus 97 GvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~~~~~~~RADhlie~~~ 176 (684)
T PLN02734 97 GVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFC 176 (684)
T ss_pred CcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcCCCCcEecchHHHHHHH
Confidence 4899999999999999999999999995 5577899999999999999999999998844321 0
Q ss_pred -------------------------------------------------------------------eCCceEEEcCCCc
Q psy9574 321 -------------------------------------------------------------------SENRFYALKPMNC 333 (783)
Q Consensus 321 -------------------------------------------------------------------~~~~~~~LrP~~~ 333 (783)
.++...+|||+++
T Consensus 177 ~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRPETA 256 (684)
T PLN02734 177 EEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRPETA 256 (684)
T ss_pred HhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceeccccc
Confidence 0223589999999
Q ss_pred HHHHHHHhcccccCC-CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhH--------------------
Q psy9574 334 PGHIQIYNSNFHSYR-DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQI-------------------- 392 (783)
Q Consensus 334 ~~~~~~~~~~~~s~~-~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~-------------------- 392 (783)
++++..|++.+..++ .||+..+|+|+.||||.+ |+.||+|+|||+|+|++.|+.|+..
T Consensus 257 QGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIs-PR~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~l~l~~~~~ 335 (684)
T PLN02734 257 QGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEIS-PRQGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLEFLLFPREE 335 (684)
T ss_pred chheeeHHHHHHhcCCCCCeeeeeccHhhhcccC-cccceeeechhhhhhhheecCcccccccchhhhhhhhhhcccHhh
Confidence 999999998877555 799999999999999997 9999999999999999999998631
Q ss_pred ----------------------HHHHHHHHHHHHHHHhhcCCeeEEEEeecCC--CCCCCChhhHH--------------
Q psy9574 393 ----------------------KNEIVVFNELVHKVYNEFGFKKIKIKLALRP--NKRIGENNIWD-------------- 434 (783)
Q Consensus 393 ----------------------~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~--~~~~g~~~~~~-------------- 434 (783)
.+++.-.+.....+|.++|++.-.++..... +...-+.++||
T Consensus 336 q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~GWiE~vG 415 (684)
T PLN02734 336 QLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVG 415 (684)
T ss_pred hhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecCCCcEEEEE
Confidence 1233445555666666677654333332111 11111223333
Q ss_pred ---HHHHHHHHHHHhcCCceeecCCCCCcccccEE-EE-ee-c--CCCCee---------------------------ee
Q psy9574 435 ---LAENSLREAISSSGVTWEEFPGEGAFYGPKIE-YH-LK-D--SIGRSW---------------------------QC 479 (783)
Q Consensus 435 ---~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e-~~-~~-d--~~g~~~---------------------------~~ 479 (783)
.....|....+.+|.+..... .|-.|+.. .. +. + .+|..+ .-
T Consensus 416 ~AdRs~yDL~~H~~~Sg~~L~~~~---~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~~ 492 (684)
T PLN02734 416 IADRSAYDLKAHSDKSKVPLVAHE---KFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLESK 492 (684)
T ss_pred eccccccchHHHHHhhCCCeEEEe---ccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhc
Confidence 001122222222222221111 11122211 00 00 0 011000 00
Q ss_pred cceeeecC-cccccCc-------e--eeecCCcccccEEEeecccccHHHHHHHHHHhcC-----C------CCCCCCCC
Q psy9574 480 GTIQIDFS-MPHRLGA-------E--YIAENNTRKTPVMLHRAIIGSLERFIAILVENYS-----G------AMPLWLAP 538 (783)
Q Consensus 480 g~~~lD~~-~~~r~d~-------~--y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~-----~------~~P~~lap 538 (783)
|.+.++.. +.+.|.+ . -....|+.-.|+||. .++| |+|++++++|++. + .||+|+||
T Consensus 493 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIE-PS~G-IgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP 570 (684)
T PLN02734 493 GEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIE-PSFG-IGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAP 570 (684)
T ss_pred CceeeeecccCcceeechhheeeeeeeeeecCceecCceEe-cCcc-HHHHHHHHHHHHhccccCCCcceEEecCcccCC
Confidence 00001000 0011111 0 012345566899999 6778 9999999999876 2 79999999
Q ss_pred ceEEEEecCc--chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCC
Q psy9574 539 IQVMILNISK--EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPK 616 (783)
Q Consensus 539 ~qv~Vi~~~~--~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~ 616 (783)
+||.|+|+.. +..++|.+|++.|+++|++|.+|+++.++|+|+++|+++|+|++|+||. +|+||||+
T Consensus 571 ~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRd------- 639 (684)
T PLN02734 571 IKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDS----DGSVTIRE------- 639 (684)
T ss_pred cEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECC----CCeEEEEE-------
Confidence 9999999974 4688999999999999999999999889999999999999999999996 89999999
Q ss_pred cccccccccceEEEecccCcccccCCHHHHHHHHHHhhh
Q psy9574 617 HRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENV 655 (783)
Q Consensus 617 ~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~ 655 (783)
+++.....++++++++.+.+...
T Consensus 640 ----------------RdsgeQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 640 ----------------RDSKDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred ----------------CCCCceEEeeHHHHHHHHHHHHc
Confidence 55545578899999888766544
No 39
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=4.1e-39 Score=355.87 Aligned_cols=268 Identities=20% Similarity=0.319 Sum_probs=219.5
Q ss_pred hhhcccHHHHhhhccccccccc--CCCceE-eccChhH-HHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccC
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEE--SPGLIF-WHPKGYI-ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENY 312 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~--~~G~~~-~lP~g~~-l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~ 312 (783)
+++++||++||++||||+|+.+ .+|+++ |+|.+.. +.++|++|+++.+.++||++|.||.|.+.++|.+|||++.+
T Consensus 196 ~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~ 275 (502)
T PLN02320 196 SFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRG 275 (502)
T ss_pred CCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCccc
Confidence 4567999999999999999884 678887 5777565 55899999999999999999999999999999999998887
Q ss_pred CC-CceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC--C-CCCCcccceeEEEeceeEecC
Q psy9574 313 KD-NMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS--G-SLHGMMRTRSFIQDDGHIFCT 388 (783)
Q Consensus 313 ~~-~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~--g-~~~GL~R~ReF~q~d~~~f~~ 388 (783)
.+ .+|.+ ++++++|.||++.+++.++.+.+.+|++||+|++.+|+|||+|++ | ..+||+|+|||+|.|+|+||.
T Consensus 276 e~~~~y~i--e~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~ 353 (502)
T PLN02320 276 DNTQVYSI--DGSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICR 353 (502)
T ss_pred ccCceeEE--CCCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEEC
Confidence 65 67765 467899999999999888889999999999999999999999998 6 789999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEE
Q psy9574 389 KSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYH 468 (783)
Q Consensus 389 ~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~ 468 (783)
++|+++++.++++++.++|+.|||++..+.+++++..+ . ++-.-.+|++
T Consensus 354 peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgDLg~---~----------------------------a~kkyDiEvW 402 (502)
T PLN02320 354 PEESESFHEELIQIEEDLFTSLGLHFKTLDMATADLGA---P----------------------------AYRKFDIEAW 402 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccch---h----------------------------hhheEEEEEE
Confidence 99999999999999999999999999999999987432 1 1112224444
Q ss_pred eecC--CCCeeeecceeeecCcccccCceeeec--------CCc-----ccccEEEeecccccHHHHHHHHHHhcCC---
Q psy9574 469 LKDS--IGRSWQCGTIQIDFSMPHRLGAEYIAE--------NNT-----RKTPVMLHRAIIGSLERFIAILVENYSG--- 530 (783)
Q Consensus 469 ~~d~--~g~~~~~g~~~lD~~~~~r~d~~y~~~--------~g~-----~~~p~~i~~~~~G~ieRli~~LlE~~~~--- 530 (783)
++.. ++....|+ ++.||| ++|.+++|.+. .|+ ..++++++++. ..+.|+|.||+|+|+.
T Consensus 403 ~P~~~~y~EvsS~S-Nc~DfQ-aRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgTa-lAv~R~l~AILENyQ~~dG 479 (502)
T PLN02320 403 MPGLGRYGEISSAS-NCTDYQ-SRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATA-CAVPRMIVCLLENYQQEDG 479 (502)
T ss_pred ecCCCcEEEEeeec-chhhHh-hhcccceeccccccccccccccccCCCcceeEecccch-hHHHHHHHHHHHhCcCCCC
Confidence 4331 12233444 578999 79999999863 332 34444444322 2399999999999983
Q ss_pred --CCCCCCCCce
Q psy9574 531 --AMPLWLAPIQ 540 (783)
Q Consensus 531 --~~P~~lap~q 540 (783)
.+|..|.||-
T Consensus 480 si~IP~vLrpym 491 (502)
T PLN02320 480 SVVIPEPLRPFM 491 (502)
T ss_pred cEECChhhhhhc
Confidence 7899888873
No 40
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-38 Score=343.28 Aligned_cols=338 Identities=24% Similarity=0.383 Sum_probs=250.8
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHHH--cCCeEeecCcccchHHHhhhCCcccCCCCceE------------------
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYKY--NGYKEIKTPQMLDLSLWKKTGHWENYKDNMFT------------------ 318 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~~--~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~------------------ 318 (783)
.+|+|||.|.|+.|+++|++.|++.|.. -++.+|+||++.+.++|+.|||.++|.+-|..
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l 108 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYL 108 (558)
T ss_pred cccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccccccceeeccccchhhhhhHHHHHHh
Confidence 8999999999999999999999999964 58999999999999999999999999884332
Q ss_pred ------------------------------------------ee---eCCceEEEcCCCcHHHHHHHhcccccCC-CCCc
Q psy9574 319 ------------------------------------------TK---SENRFYALKPMNCPGHIQIYNSNFHSYR-DLPL 352 (783)
Q Consensus 319 ------------------------------------------~~---~~~~~~~LrP~~~~~~~~~~~~~~~s~~-~LPl 352 (783)
+. .+++..+|||++.++++..|++...+.+ .||+
T Consensus 109 ~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPF 188 (558)
T COG0423 109 GKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPF 188 (558)
T ss_pred hhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhccCCCe
Confidence 10 2456799999999999999998877555 7999
Q ss_pred eEEEecceeecCCCCCCCCcccceeEEEeceeEecCchh-HHHHH-----------------------------------
Q psy9574 353 RFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ-IKNEI----------------------------------- 396 (783)
Q Consensus 353 r~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~-~~~e~----------------------------------- 396 (783)
.++|+|+.||||.+ |+.||+|+|||+|++++.|+.|++ ...-+
T Consensus 189 giaQIGKsfRNEIS-Pr~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~ 267 (558)
T COG0423 189 GIAQIGKSFRNEIS-PRNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETL 267 (558)
T ss_pred EEEeechhhccccC-cccceeehhhhhhhheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeechhH
Confidence 99999999999998 999999999999999999999865 11111
Q ss_pred HHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcc-cccEEEEeecCCCC
Q psy9574 397 VVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFY-GPKIEYHLKDSIGR 475 (783)
Q Consensus 397 ~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~-g~~~e~~~~d~~g~ 475 (783)
.-++..+..++..+|++.-.++.- +..+.+-|.| .--+|+.+.-.-|.
T Consensus 268 ~y~~~~~~~fl~~lGI~~e~lRfr-------------------------------qh~~~E~AHYa~~twD~E~~~~~~g 316 (558)
T COG0423 268 AYFIARTKFFLEDLGIDPEKLRFR-------------------------------QHLPEELAHYSKDTWDAEYKFPFGG 316 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHhhhh-------------------------------hcChHHHhhhhhcceeEEEecCCCc
Confidence 122333334444444432111111 1111111111 11122211111000
Q ss_pred eee-eccee--eecCcc-------------cccC-------------ceee-----------------------------
Q psy9574 476 SWQ-CGTIQ--IDFSMP-------------HRLG-------------AEYI----------------------------- 497 (783)
Q Consensus 476 ~~~-~g~~~--lD~~~~-------------~r~d-------------~~y~----------------------------- 497 (783)
|+ |-|+. .||.|+ .+|+ ..|.
T Consensus 317 -WiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~ 395 (558)
T COG0423 317 -WIELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYE 395 (558)
T ss_pred -eEEEEEeecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccc
Confidence 11 11111 222221 0000 0111
Q ss_pred ------------ecCCcccccEEEeecccccHHHHHHHHHHhcCC-----------CCCCCCCCceEEEEecCcc--hHH
Q psy9574 498 ------------AENNTRKTPVMLHRAIIGSLERFIAILVENYSG-----------AMPLWLAPIQVMILNISKE--QIE 552 (783)
Q Consensus 498 ------------~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~-----------~~P~~lap~qv~Vi~~~~~--~~~ 552 (783)
...|++-.|++|. .++| ++|++.+++++... .+|+++||++|+|+|+... ..+
T Consensus 396 ~~~~~~~i~~~~~~~~e~~iP~VIE-PSfG-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~ 473 (558)
T COG0423 396 VSKDLVIIEEVEKVTGEKYIPHVIE-PSFG-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVE 473 (558)
T ss_pred cccchhheeeeeeccCceecCceec-cCCC-chHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecccchhH
Confidence 1223556899999 6788 99999999987431 7999999999999999854 899
Q ss_pred HHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEec
Q psy9574 553 YAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSG 632 (783)
Q Consensus 553 ~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~ 632 (783)
.|.+|.+.|++.|+.|.+|+++ +||++++.++.+|+||+|+|..+.+++++||||+
T Consensus 474 ~a~~i~~~L~~~~~~v~yDdsG-sIGrRYrR~DEIGtPfcVTvD~eTleD~tVTiRe----------------------- 529 (558)
T COG0423 474 IAKEIFEKLRELGFNVDYDDSG-SIGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRE----------------------- 529 (558)
T ss_pred HHHHHHHHHHhcCceEEecCCC-cHhhhhhhccccCCceEEEecCCcccCCcEEEee-----------------------
Confidence 9999999999999999999976 9999999999999999999999999999999999
Q ss_pred ccCcccccCCHHHHHHHHHHhhh
Q psy9574 633 IKNEPLGIVTLEKAFYLAEKENV 655 (783)
Q Consensus 633 ~~g~~~~~~~~~~a~~~~~~~~~ 655 (783)
+|...+-.++++++...+.+...
T Consensus 530 RDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 530 RDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred cCchheeeeeHHHHHHHHHHHhc
Confidence 88888889999999998876653
No 41
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=9.3e-39 Score=334.24 Aligned_cols=248 Identities=23% Similarity=0.417 Sum_probs=202.7
Q ss_pred cccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe
Q psy9574 240 KRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT 319 (783)
Q Consensus 240 ~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 319 (783)
...|+.|.+. |++ ...++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|+.+||++.|.++||++
T Consensus 4 ~~~~~l~~~a-g~~--~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~ 80 (255)
T cd00779 4 IISHKLLLRA-GFI--RQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRL 80 (255)
T ss_pred ccHHHHHHHc-CCc--ccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEE
Confidence 3456666666 754 4579999999999999999999999999999999999999999999999999999999999999
Q ss_pred -eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hHHHHHH
Q psy9574 320 -KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QIKNEIV 397 (783)
Q Consensus 320 -~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~~~e~~ 397 (783)
+.++++++||||+|++++.++++++.|+++||+|+||+|+|||+|.+ |++||+|+|||+|.|+|+||.++ ++++++.
T Consensus 81 ~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~-~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~ 159 (255)
T cd00779 81 KDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGREFLMKDAYSFDIDEESLEETYE 159 (255)
T ss_pred ecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCC-CCCceeeeeeEeHhhheeccCCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999965 89999999999999999999974 7899889
Q ss_pred HHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCee
Q psy9574 398 VFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSW 477 (783)
Q Consensus 398 e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~ 477 (783)
+++.++.++|+.|||+...+..+++ .+|.... ..-.+|..+++ ++..
T Consensus 160 ~i~~~~~~il~~Lgl~~~~~~~~~~---~~gg~~s----------------------------~~~~~e~~~~~--~~~~ 206 (255)
T cd00779 160 KMYQAYSRIFKRLGLPFVKVEADSG---AIGGSLS----------------------------HEFHVLSPLKI--TKGI 206 (255)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCC---CCCCccc----------------------------EEEEEEEecCC--CCeE
Confidence 9999999999999998544443222 2222110 00124444444 2234
Q ss_pred eeccee-eecCcccccCceeeecCCcccccEEEeecccc-cHHHHHHHHHHh
Q psy9574 478 QCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG-SLERFIAILVEN 527 (783)
Q Consensus 478 ~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G-~ieRli~~LlE~ 527 (783)
++|++. +.-.+++||+++|.+.+|+.+.+++ +++| +++|+|+|++|+
T Consensus 207 e~~s~~~lg~~~sr~~~i~~~~~~~~~~~~~~---~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 207 EVGHIFQLGTKYSKALGATFLDENGKPKPLEM---GCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred EEEeeeecchhHHHhcCcEEECCCCCEEeeEe---cCccchHHHHHHHHHcC
Confidence 444443 4334589999999999888877776 4444 489999999984
No 42
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.1e-37 Score=324.94 Aligned_cols=246 Identities=21% Similarity=0.307 Sum_probs=201.5
Q ss_pred cHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCC-CCceEe-
Q psy9574 242 DHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYK-DNMFTT- 319 (783)
Q Consensus 242 ~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~-~~my~~- 319 (783)
.|..|.+. ||++. ..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.++|+++.+. ++||.+
T Consensus 6 ~~~~l~~a-g~~~~-~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~ 83 (264)
T cd00772 6 SLEHIGKA-ELADQ-GPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFK 83 (264)
T ss_pred HHHHHHhc-CCccc-cCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEE
Confidence 36566666 87664 248999999999999999999999999999999999999999999999999998855 899998
Q ss_pred eeCC----ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEe-cCchhHHH
Q psy9574 320 KSEN----RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIF-CTKSQIKN 394 (783)
Q Consensus 320 ~~~~----~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f-~~~~~~~~ 394 (783)
+.++ ++++||||+|++++.++++++.||++||+|+||+++|||+|.+ |++||+|+|||+|.|+|+| ++++++++
T Consensus 84 ~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~ 162 (264)
T cd00772 84 DAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADE 162 (264)
T ss_pred eCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHH
Confidence 4554 8999999999999999999999999999999999999999976 7899999999999999999 67788999
Q ss_pred HHHHHHHHHHHHHhhcC-CeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCC
Q psy9574 395 EIVVFNELVHKVYNEFG-FKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSI 473 (783)
Q Consensus 395 e~~e~~~~~~~i~~~lG-l~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~ 473 (783)
++.++++++.++|+.|| ++ +.+...+.+.+++|+... -.+|+.+++
T Consensus 163 e~~~~~~~~~~i~~~l~~lp-~~~~~~~~~d~~~g~~~~------------------------------~d~e~~~p~-- 209 (264)
T cd00772 163 EFLNMLSAYAEIARDLAAID-FIEGEADEGAKFAGASKS------------------------------REFEALMED-- 209 (264)
T ss_pred HHHHHHHHHHHHHHhcCCcc-EEEEEcCCCccccCCcCC------------------------------EEEEEECCC--
Confidence 99999999999999999 87 555555555555554322 235666654
Q ss_pred CCeeeeccee--eecCcccccC--ceeeecCCcccccEEEeecccc-cHHHHHHHHHHh
Q psy9574 474 GRSWQCGTIQ--IDFSMPHRLG--AEYIAENNTRKTPVMLHRAIIG-SLERFIAILVEN 527 (783)
Q Consensus 474 g~~~~~g~~~--lD~~~~~r~d--~~y~~~~g~~~~p~~i~~~~~G-~ieRli~~LlE~ 527 (783)
|+..++++.+ .|++ +++++ ++|.+.+|+...+++ +++| +++|+|+|++|.
T Consensus 210 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~---n~~gi~~~R~l~aile~ 264 (264)
T cd00772 210 GKAKQAETGHIFGEGF-ARAFDLKAKFLDKDGKEKFFEM---GCWGIGISRFIGAIIEQ 264 (264)
T ss_pred CCEeEEEeeeeccCCc-hhhcCCccEEECCCCCEEEEEe---ccccchHHHHHHHhhcC
Confidence 4443333332 4544 68666 999998887766666 4444 488999999983
No 43
>KOG1936|consensus
Probab=100.00 E-value=4.8e-37 Score=320.14 Aligned_cols=352 Identities=16% Similarity=0.179 Sum_probs=274.1
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-eeCCceEEEcCCCcHH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KSENRFYALKPMNCPG 335 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~ 335 (783)
.++|++||-|..+.++++|.+.+.+.|++||+..|+||+|+-.+++.. -|.- .+.+|.+ |++|+.+.|||+.|+|
T Consensus 62 tPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd---skLiYdlkDQGGEl~SLRYDLTVP 138 (518)
T KOG1936|consen 62 TPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED---SKLIYDLKDQGGELCSLRYDLTVP 138 (518)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc---cceeEehhhcCCcEEEeecccccH
Confidence 399999999999999999999999999999999999999999999976 3542 2779998 8999999999999999
Q ss_pred HHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeE
Q psy9574 336 HIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKI 415 (783)
Q Consensus 336 ~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~ 415 (783)
++++++.+- ---++.|+++++||++...-.+| |+|||+|+|++|-|.-++...+ +|++.++.++|+.||+.+|
T Consensus 139 fARylAmNk----i~sikRy~iAkVyRRd~P~mtrG--R~REFYQcDFDIAG~~d~M~pd-aE~lkiv~e~L~~l~Igd~ 211 (518)
T KOG1936|consen 139 FARYLAMNK----ITSIKRYHIAKVYRRDQPAMTRG--RYREFYQCDFDIAGQFDPMIPD-AECLKIVVEILSRLGIGDY 211 (518)
T ss_pred HHHHHHHcc----cccceeeeEEEEEeccCchhhch--hhhhhhccCccccccCCCCCch-HHHHHHHHHHHhhcCccce
Confidence 999998552 12478999999999998444889 9999999999999988775433 5779999999999999999
Q ss_pred EEEeecCCC------------CCCCC---------hhhHHHH--------------------------------------
Q psy9574 416 KIKLALRPN------------KRIGE---------NNIWDLA-------------------------------------- 436 (783)
Q Consensus 416 ~i~l~~~~~------------~~~g~---------~~~~~~~-------------------------------------- 436 (783)
.|++|+|.. +.++. ...|+..
T Consensus 212 ~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~ 291 (518)
T KOG1936|consen 212 GIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADP 291 (518)
T ss_pred EEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCC
Confidence 999998742 11110 0124310
Q ss_pred -----------H---HHHHHHHHhcCCce------eecCCCCCcccccEEEEeec-----------------CCCCeeee
Q psy9574 437 -----------E---NSLREAISSSGVTW------EEFPGEGAFYGPKIEYHLKD-----------------SIGRSWQC 479 (783)
Q Consensus 437 -----------~---~~l~~~l~~~g~~~------~~~~g~~~y~g~~~e~~~~d-----------------~~g~~~~~ 479 (783)
. ..|.++|+..|+.- ++..|++||+|.++|..... ..|-.+++
T Consensus 292 ~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSva 371 (518)
T KOG1936|consen 292 KLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVA 371 (518)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhccccccCCCccccc
Confidence 0 33455667777752 34569999999999987642 11224556
Q ss_pred cceeeecCcccccCceeeecCCcc--cccEEEeecccccHHHHHHHHHHhcCCC-CCCCCCCceEEEEecCcchHHHHHH
Q psy9574 480 GTIQIDFSMPHRLGAEYIAENNTR--KTPVMLHRAIIGSLERFIAILVENYSGA-MPLWLAPIQVMILNISKEQIEYAKK 556 (783)
Q Consensus 480 g~~~lD~~~~~r~d~~y~~~~g~~--~~p~~i~~~~~G~ieRli~~LlE~~~~~-~P~~lap~qv~Vi~~~~~~~~~a~~ 556 (783)
|+ ||||. .++..+++ ..|++ |..-++||++..|-+..... ---...-.||+|...+........+
T Consensus 372 aG--------GRYDn-Lv~mf~~k~~~vPcv---G~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k 439 (518)
T KOG1936|consen 372 AG--------GRYDN-LVGMFDKKGDKVPCV---GQSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLK 439 (518)
T ss_pred cC--------cchhh-HHHHhccccCcCCcc---ceeehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHH
Confidence 65 99996 35555544 57988 44334999999886543220 1111244789999888888999999
Q ss_pred HHHHhHhCCCeEEEECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccC
Q psy9574 557 VFNFLKSKKFRVEVDLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKN 635 (783)
Q Consensus 557 i~~~Lr~~gi~v~~d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g 635 (783)
+.+.||.+||..++-.. +.++-+++.+|++.|||+++|+|++|+++|.|+||++ ...
T Consensus 440 ~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~----------------------~~r 497 (518)
T KOG1936|consen 440 VVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNV----------------------GTR 497 (518)
T ss_pred HHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEec----------------------ccc
Confidence 99999999999997655 6789999999999999999999999999999999994 222
Q ss_pred cccccCCHHHHHHHHHHhh
Q psy9574 636 EPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 636 ~~~~~~~~~~a~~~~~~~~ 654 (783)
....++.++++..+++..
T Consensus 498 -e~~~v~~e~~v~~l~~~l 515 (518)
T KOG1936|consen 498 -EEVLVKREQFVSELKDLL 515 (518)
T ss_pred -cceeccHHHHHHHHHHHh
Confidence 235788888888776543
No 44
>KOG4163|consensus
Probab=100.00 E-value=1.6e-37 Score=322.63 Aligned_cols=413 Identities=20% Similarity=0.305 Sum_probs=325.8
Q ss_pred hhhccccccchhhHHHHHHHHhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecC
Q psy9574 216 RIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTP 295 (783)
Q Consensus 216 Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP 295 (783)
+..|......+++.+|..+ .|.+. +++++. ..+|+|.+.|.++.+|++|+.|+...+.+.|.+.+++|
T Consensus 56 ~~~gl~~~k~~df~~WY~q----------Vitk~-emieYy-dvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFP 123 (551)
T KOG4163|consen 56 TLLGLTAKKEEDFPEWYSQ----------VITKG-EMIEYY-DVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFP 123 (551)
T ss_pred hhcccccccccchHHHHHH----------Hhhhh-hhheee-cccceEEecchHHHHHHHHHHHHHHHHHHhccccceee
Confidence 3456666677788888765 33332 433443 28899999999999999999999999999999999999
Q ss_pred cccchHHHhh-hCCcccCCCCceEeeeCC-----ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCC
Q psy9574 296 QMLDLSLWKK-TGHWENYKDNMFTTKSEN-----RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSL 369 (783)
Q Consensus 296 ~l~~~~l~~~-sg~~~~~~~~my~~~~~~-----~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~ 369 (783)
.|++..++++ ..|.+.|..++-.+.+.| +.+++|||++.-++.+|+.+++||||||+++.||.+|-|+|-++|+
T Consensus 124 mfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~ 203 (551)
T KOG4163|consen 124 MFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQ 203 (551)
T ss_pred eecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCC
Confidence 9999999998 689999999999886543 5689999999999999999999999999999999999999998654
Q ss_pred CCcccceeEEEecee-EecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCC---CCCCCChhhHHHHHHHHHHHHH
Q psy9574 370 HGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRP---NKRIGENNIWDLAENSLREAIS 445 (783)
Q Consensus 370 ~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~---~~~~g~~~~~~~~~~~l~~~l~ 445 (783)
.++|.|||.+.+.| .|.+++++++|+..+++++.++|..| +. ..+. .-|. +++.
T Consensus 204 -PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~el-lA-iPVv-kGrKse~EkFa------------------ 261 (551)
T KOG4163|consen 204 -PFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEEL-LA-IPVV-KGRKSEKEKFA------------------ 261 (551)
T ss_pred -cchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhh-hc-cccc-cCccchhhhcc------------------
Confidence 57999999999999 78888999999999999999999886 21 1111 1111 1111
Q ss_pred hcCCceeecCCCCCcccccEEEEeecCCCCeeeeccee-eecCcccccCceeeec-CCcccccEEEeecccccHHHHHHH
Q psy9574 446 SSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQ-IDFSMPHRLGAEYIAE-NNTRKTPVMLHRAIIGSLERFIAI 523 (783)
Q Consensus 446 ~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~-lD~~~~~r~d~~y~~~-~g~~~~p~~i~~~~~G~ieRli~~ 523 (783)
|+-|.+.+|..+.+ .|+..|.+|.+ |+.|+++-|++.|.+. .|.+.+ ++..++|-..|.|++
T Consensus 262 ------------Ggd~TttvEa~i~~-~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~f---v~QnSWg~sTRtiGv 325 (551)
T KOG4163|consen 262 ------------GGDYTTTVEAFIPC-SGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEF---VWQNSWGLSTRTIGV 325 (551)
T ss_pred ------------CCcceEEEeeeecc-ccccccccchhhhhHHHHHhhceeecCCCccchhh---eeecccccccceeeE
Confidence 12234446776644 57888999887 8999999999999888 555443 567899989999999
Q ss_pred HHHhcCC----CCCCCCCCceEEEEecC----------cchHHHHHHHHHHhHhCCCeEEEECC-CccHHHHHHHhhcCC
Q psy9574 524 LVENYSG----AMPLWLAPIQVMILNIS----------KEQIEYAKKVFNFLKSKKFRVEVDLR-NEKIAYKIRLHSLEK 588 (783)
Q Consensus 524 LlE~~~~----~~P~~lap~qv~Vi~~~----------~~~~~~a~~i~~~Lr~~gi~v~~d~~-~~~l~~k~~~A~~~g 588 (783)
++..|+| .+|+.+||+||+|+|++ +...++|..+...|..+|||++.|+| +-+.|.||.+++..|
T Consensus 326 miM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwElkG 405 (551)
T KOG4163|consen 326 MIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWELKG 405 (551)
T ss_pred EEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccceeecC
Confidence 9988876 89999999999999987 13578999999999999999999999 579999999999999
Q ss_pred CCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCc
Q psy9574 589 LPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPV 668 (783)
Q Consensus 589 ip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppv 668 (783)
+|+.|-||++++++++|++-.. .+|+. ..|+++++...+++...+
T Consensus 406 VPlRiEiGPrD~~~~qv~~VrR----------------------d~~~K-~~v~~~~l~~~v~elLe~------------ 450 (551)
T KOG4163|consen 406 VPLRIEIGPRDLASNQVVAVRR----------------------DTGEK-KDVSLGDLEKTVKELLEK------------ 450 (551)
T ss_pred ceeEEEeccchhhhCeEEEEEc----------------------cCCcc-cccCHHHHHHHHHHHHHH------------
Confidence 9999999999999999775550 55554 699999998887765433
Q ss_pred eEecchhHHHHHHHHHhHHhhhcc--------cccceeEEEEecCCCcchHHHHHHHH
Q psy9574 669 ARLMDYGKFKYREKKKAHEVKMKQ--------KVILIKEVKFRPCINEGDYNIKLRNL 718 (783)
Q Consensus 669 cki~~~~~~~~~~~k~~~~~~kk~--------~~~~~Kei~~~~~i~~hDl~~k~~~~ 718 (783)
| ..-.|+..+..+++.-.. +....|.|-+.|.++.-+-+..+|.-
T Consensus 451 ---i--q~~m~~kA~~~rds~~~~v~~~~eF~~aL~~k~iilaPwcg~~ecE~~IK~~ 503 (551)
T KOG4163|consen 451 ---I--QTNLYEKAKEKRDSHIVKVNTWEEFVKALDQKKIILAPWCGEIECEKDIKKR 503 (551)
T ss_pred ---H--HHHHHHHHHHHhhhheeeeeeHHHHHHHhccCCEEEccccCcHHHHHHHHhh
Confidence 1 133455544444432111 12344667777777777766666543
No 45
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=9.5e-35 Score=302.09 Aligned_cols=229 Identities=26% Similarity=0.419 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeC----CceEEEcCCCcHHHHHHHhcc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSE----NRFYALKPMNCPGHIQIYNSN 343 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~----~~~~~LrP~~~~~~~~~~~~~ 343 (783)
|+.++++|++++++.+.++||++|.||.|++.++|..+||++.+.++||.+ +.+ ++.++||||+|++++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 678999999999999999999999999999999999999999999999999 444 689999999999999999999
Q ss_pred cccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCC
Q psy9574 344 FHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRP 423 (783)
Q Consensus 344 ~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~ 423 (783)
..+|++||+|++|+|+|||+|.+ +.+|+.|+|||+|.|+|+||.++++.++..++++++.++|+.||++ +.+.+++.+
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~-~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~-~~i~~~~~~ 158 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPS-GRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP-VRVVVADDP 158 (235)
T ss_pred CccchhcCeeeeeecccccCCCC-CCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEEccCh
Confidence 99999999999999999999997 5589999999999999999999888888899999999999999996 888887765
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCC-CCeeeecceeeecCcccccCceeeecCCc
Q psy9574 424 NKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSI-GRSWQCGTIQIDFSMPHRLGAEYIAENNT 502 (783)
Q Consensus 424 ~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~-g~~~~~g~~~lD~~~~~r~d~~y~~~~g~ 502 (783)
....+.. +|.++|+++++|+.+.+.. |+.+++++.+.+++++.++...+.+.+|+
T Consensus 159 ~~~~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 214 (235)
T cd00670 159 FFGRGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGG 214 (235)
T ss_pred hhccCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccCCC
Confidence 4322221 5778899999999998888 88999999999999888888777877787
Q ss_pred ccccEEEeecccccHHHHHHHHH
Q psy9574 503 RKTPVMLHRAIIGSLERFIAILV 525 (783)
Q Consensus 503 ~~~p~~i~~~~~G~ieRli~~Ll 525 (783)
...|+++|++ |++||++++|+
T Consensus 215 ~~~~~~~~~~--~~~eR~l~all 235 (235)
T cd00670 215 GRAHTGCGGA--GGEERLVLALL 235 (235)
T ss_pred ceeeEEEeCc--cHHHHHHHHHC
Confidence 7889999965 66999999874
No 46
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-34 Score=322.72 Aligned_cols=267 Identities=16% Similarity=0.164 Sum_probs=212.2
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHH-HHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKI-YKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT 319 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~-~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 319 (783)
.+|..++.++||++ .-.++|++.|+|.|++|+++|++++++. ..+.||++|.||.|.+.++|.+|||+++|.++||.+
T Consensus 195 ~~h~el~~~~glld-k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V 273 (517)
T PRK00960 195 GDPTEEAEKLGWVK-RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYV 273 (517)
T ss_pred CCHHHHHHHCCCcc-ccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEe
Confidence 88999999999887 3459999999999999999999999986 678899999999999999999999999999999987
Q ss_pred ee------------------------------CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEE-ecceeecCCCCC
Q psy9574 320 KS------------------------------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGE-FGQCHRNESSGS 368 (783)
Q Consensus 320 ~~------------------------------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~-~g~~fR~E~~g~ 368 (783)
.. .+..++|+||+|++++.+|+++++|+++||+|+++ +|+|||+|. |.
T Consensus 274 ~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~Es-Gs 352 (517)
T PRK00960 274 CPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEG-GG 352 (517)
T ss_pred eccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCC-CC
Confidence 41 13468999999999999999999999999999999 679999996 57
Q ss_pred CCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCCh--hhHHHHHHHHHHHHHh
Q psy9574 369 LHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGEN--NIWDLAENSLREAISS 446 (783)
Q Consensus 369 ~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~--~~~~~~~~~l~~~l~~ 446 (783)
.+||+|+|||+|.|+|+||+++|+.+++.+++..+..+++.|||+.+++..++ | +++.. -.|
T Consensus 353 ~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~D-P--Ff~~~~k~~~------------- 416 (517)
T PRK00960 353 AHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDD-P--FYLEGRGLED------------- 416 (517)
T ss_pred CCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEeccc-c--cccccCcccc-------------
Confidence 99999999999999999999999999999999999999999999845444322 1 11100 000
Q ss_pred cCCceeecCCCCCcccccEEEEee----cCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccc-cHHHHH
Q psy9574 447 SGVTWEEFPGEGAFYGPKIEYHLK----DSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG-SLERFI 521 (783)
Q Consensus 447 ~g~~~~~~~g~~~y~g~~~e~~~~----d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G-~ieRli 521 (783)
-+-+..+++...+|..++ +.-.+..+.++++.|++ ++||+++| .+|+ . .|.+++| +++|++
T Consensus 417 ------~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~f-arrfnIk~--~~g~--~---~hTnctG~g~eR~l 482 (517)
T PRK00960 417 ------RGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHF-VEGFNIKD--YKGR--K---LWTGCTGYGLERWV 482 (517)
T ss_pred ------ccccCccccceeEEEEecCccCCCCEEEEEeeeeccchh-hHhhCccc--CCCC--e---EeecceeeHHHHHH
Confidence 000122344556787776 22222455566677776 79999965 2332 2 3444444 489999
Q ss_pred HHHHHhcC---CCCCCCCCCc
Q psy9574 522 AILVENYS---GAMPLWLAPI 539 (783)
Q Consensus 522 ~~LlE~~~---~~~P~~lap~ 539 (783)
+||+|+|+ +.||..+.|+
T Consensus 483 ~AlLe~hG~d~~~wPe~~r~~ 503 (517)
T PRK00960 483 IGFLAQKGFDPENWPEEIRKR 503 (517)
T ss_pred HHHHHhcCCCCCcCCHHHHHh
Confidence 99999997 3899766554
No 47
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-34 Score=309.28 Aligned_cols=283 Identities=20% Similarity=0.359 Sum_probs=235.4
Q ss_pred CCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHH
Q psy9574 208 NQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKI 283 (783)
Q Consensus 208 d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~ 283 (783)
|+..+...|.||..-.. ..++++++|+.||..+|+.+|..+ |+++++|.+.++++.++|.+++.+.
T Consensus 118 de~~n~~vr~~g~~~~~----------~~~f~pk~H~~lge~l~~~Df~~aaKvsGsrf~~~~~~~a~L~rAL~~f~ld~ 187 (429)
T COG0172 118 DEDDNVEVRRWGEPPVF----------VFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERALIQFMLDL 187 (429)
T ss_pred CcccceEEEEEecCccc----------cccCCcchHHHHhhhcCcchhhhhcccCCCceEEEcCHHHHHHHHHHHHHHHH
Confidence 45566667777864211 235678999999999999999987 8889999999999999999999999
Q ss_pred HHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeec
Q psy9574 284 YKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRN 363 (783)
Q Consensus 284 ~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~ 363 (783)
+.++||+++.+|.|.+.+++.++|++++|.++||++..+ .++|.||+|.|++.++++.+....+||++++.+++|||.
T Consensus 188 ~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~--~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~ 265 (429)
T COG0172 188 HTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP--DLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRS 265 (429)
T ss_pred HHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC--CEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhc
Confidence 999999999999999999999999999999999999543 899999999999999999998888999999999999999
Q ss_pred CCCC---CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHH
Q psy9574 364 ESSG---SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSL 440 (783)
Q Consensus 364 E~~g---~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l 440 (783)
|+++ -.+||+|+|||++.++..||.|+++++++.+++..+.++++.|+|++..+.+++++..+-
T Consensus 266 EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~------------- 332 (429)
T COG0172 266 EAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFS------------- 332 (429)
T ss_pred ccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCCcCCc-------------
Confidence 9963 289999999999999999999999999999999999999999999988888888764321
Q ss_pred HHHHHhcCCceeecCCCCCcccccEEEEeec--CCCCeeeecceeeecCcccccCceeee-cCCcccccEEEeeccccc-
Q psy9574 441 REAISSSGVTWEEFPGEGAFYGPKIEYHLKD--SIGRSWQCGTIQIDFSMPHRLGAEYIA-ENNTRKTPVMLHRAIIGS- 516 (783)
Q Consensus 441 ~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d--~~g~~~~~g~~~lD~~~~~r~d~~y~~-~~g~~~~p~~i~~~~~G~- 516 (783)
+.-.-.+|++++. .+...+.|+ ++.||| ++|++++|.. ..|+.. .+| ++.|+
T Consensus 333 ------------------a~kkYDlEvWlP~q~~yrEisScS-nc~DfQ-aRR~~~Ryr~~~~~k~~---~vh-TLNGsg 388 (429)
T COG0172 333 ------------------AAKKYDLEVWLPGQNKYREISSCS-NCTDFQ-ARRLNIRYRDKEEGKRE---FVH-TLNGSG 388 (429)
T ss_pred ------------------ccCceeEEEEecCCCCceeeeeee-ccccHH-HHHHhcccccccCCCcE---EEE-eccchH
Confidence 1111235666654 223345565 578999 7999999976 455543 345 55555
Q ss_pred --HHHHHHHHHHhcCC-----CCCCCCCCc
Q psy9574 517 --LERFIAILVENYSG-----AMPLWLAPI 539 (783)
Q Consensus 517 --ieRli~~LlE~~~~-----~~P~~lap~ 539 (783)
+.|++.|++|+|+. .+|..|.||
T Consensus 389 lA~~R~l~AilENyq~~dG~v~IPevL~~y 418 (429)
T COG0172 389 LAVGRTLVAILENYQQEDGSVKIPEVLRPY 418 (429)
T ss_pred HHHHHHHHHHHHcccCCCCCeeccHHHHhh
Confidence 99999999999873 566666665
No 48
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=3.7e-32 Score=302.11 Aligned_cols=301 Identities=17% Similarity=0.184 Sum_probs=237.3
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-ee-CCceEEEcCCCcH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KS-ENRFYALKPMNCP 334 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~-~~~~~~LrP~~~~ 334 (783)
.++|++||+|..+..++.+++.+++.|+++||++|.||+|++.+++.. +|+ ...++||+| |. +|+.++|||+.|+
T Consensus 5 ~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~--~~~~~~~~f~d~~~g~~l~LRpD~T~ 82 (391)
T PRK12292 5 LPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA--ILDLRTFKLVDQLSGRTLGLRPDMTA 82 (391)
T ss_pred CCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc--cchhhhEEEeecCCCCEEEECCCCcH
Confidence 489999999999999999999999999999999999999999999976 454 346889998 77 8999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
+++++++.... ....|+|+||+|+|||+|. |+.| |.|||+|+|+++||.++...+ .|++.++.++++.||+++
T Consensus 83 ~iaR~~a~~~~-~~~~p~r~~y~g~vfR~~~--~~~g--r~ref~Q~g~EiiG~~~~~aD--aEvi~l~~~~l~~lgl~~ 155 (391)
T PRK12292 83 QIARIAATRLA-NRPGPLRLCYAGNVFRAQE--RGLG--RSREFLQSGVELIGDAGLEAD--AEVILLLLEALKALGLPN 155 (391)
T ss_pred HHHHHHHHhcc-CCCCCeEEEeeceeeecCC--CcCC--CccchhccceEEeCCCCchHH--HHHHHHHHHHHHHcCCCC
Confidence 99999986543 3468999999999999998 7889 999999999999998876555 678999999999999988
Q ss_pred EEEEeecCCC-----CCC--------------------------------------------CChhhHHH----------
Q psy9574 415 IKIKLALRPN-----KRI--------------------------------------------GENNIWDL---------- 435 (783)
Q Consensus 415 ~~i~l~~~~~-----~~~--------------------------------------------g~~~~~~~---------- 435 (783)
+.|.++++.. ..+ |..+..+.
T Consensus 156 ~~i~i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~ 235 (391)
T PRK12292 156 FTLDLGHVGLFRALLEAAGLSEELEEVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLPSLPI 235 (391)
T ss_pred eEEEeccHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChHH
Confidence 9999986431 000 10000000
Q ss_pred --HH---HHHHHHHHhcCCc--eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCccc
Q psy9574 436 --AE---NSLREAISSSGVT--WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRK 504 (783)
Q Consensus 436 --~~---~~l~~~l~~~g~~--~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~ 504 (783)
+. ..+.+.|+..|+. +.+++ |.+||+|+.||+...+ .|. .++|| ||||-. ....|. .
T Consensus 236 ~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe~~~~~-~~~-~i~~G--------GRYD~L-~~~fg~-~ 303 (391)
T PRK12292 236 KRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFEGYVDG-VGN-PIASG--------GRYDDL-LGRFGR-A 303 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEEEEECC-CCC-cccCC--------cchhhH-HHHcCC-C
Confidence 11 2333445555543 44444 7799999999997644 333 36777 999963 455554 5
Q ss_pred ccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 505 TPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 505 ~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.|++ |+.-++||++.+ .+ +....|.+++|++.+++....|.+++..||++|++|+++....++++++++|
T Consensus 304 ~pAv---Gfai~ldrl~~~-~~------~~~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a 373 (391)
T PRK12292 304 RPAT---GFSLDLDRLLEL-QL------ELPVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYA 373 (391)
T ss_pred CCCc---eEEeeHHHHHhh-cc------ccccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHH
Confidence 7888 444459999873 11 1122456788888888888889999999999999999998878899999999
Q ss_pred hcCCC
Q psy9574 585 SLEKL 589 (783)
Q Consensus 585 ~~~gi 589 (783)
+..|+
T Consensus 374 ~~~~~ 378 (391)
T PRK12292 374 RDRQI 378 (391)
T ss_pred hhcCe
Confidence 99998
No 49
>KOG2509|consensus
Probab=99.97 E-value=7.4e-32 Score=283.95 Aligned_cols=288 Identities=17% Similarity=0.297 Sum_probs=234.8
Q ss_pred cCCCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHH
Q psy9574 206 KGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMR 281 (783)
Q Consensus 206 ~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~ 281 (783)
-+|+.++.++|+++..-. ++....|..|++.+|+++.... |.-.|++...++.+.++|.+|..
T Consensus 130 ~~ee~~~~v~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal 196 (455)
T KOG2509|consen 130 SNEEQANVVQRVGGPLEF-------------EFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYAL 196 (455)
T ss_pred CchhhhhHHHHhcCCccc-------------ccccccHHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHH
Confidence 356677888888774321 2334678999999998777776 44467888999999999999999
Q ss_pred HHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEeccee
Q psy9574 282 KIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCH 361 (783)
Q Consensus 282 ~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~f 361 (783)
+.+.+.||.++.||.|.+.+++.++|..+.+.+++|..-.++++.||..|++.|++.++++.+....+||+|++.+++||
T Consensus 197 ~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~Cf 276 (455)
T KOG2509|consen 197 DFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCF 276 (455)
T ss_pred HHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhcccccccccCceeeeehhHHH
Confidence 99999999999999999999999999999999988887556689999999999999999988888889999999999999
Q ss_pred ecCCCC---CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHH
Q psy9574 362 RNESSG---SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAEN 438 (783)
Q Consensus 362 R~E~~g---~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~ 438 (783)
|.|.+. ..+||+|+|||++.|++++|.|+++++.+.||+++..++|+.|||++..+.+.+... |....
T Consensus 277 R~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~eL---g~aAa------ 347 (455)
T KOG2509|consen 277 RAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGEL---GAAAA------ 347 (455)
T ss_pred HHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEecCCchhh---CcHHH------
Confidence 999832 578999999999999999999999999999999999999999999977777766442 22110
Q ss_pred HHHHHHHhcCCce-eecCCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceee---ecCCcccccEEEeeccc
Q psy9574 439 SLREAISSSGVTW-EEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYI---AENNTRKTPVMLHRAII 514 (783)
Q Consensus 439 ~l~~~l~~~g~~~-~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~---~~~g~~~~p~~i~~~~~ 514 (783)
+. ++. -+.||.+.| |....|+ +|+||| |+|+.++|. ..+|...+.++++++.+
T Consensus 348 ------kK--yDiEAWmPgrg~y-------------gEl~ScS-NCTDyQ-SRRL~IRy~~~k~~~~~~~yvHtLN~Tac 404 (455)
T KOG2509|consen 348 ------KK--YDIEAWMPGRGAY-------------GELVSCS-NCTDYQ-SRRLGIRYGQKKTNDGEKKYVHTLNGTAC 404 (455)
T ss_pred ------hh--cchhhhcCccccc-------------ccccccc-cchhHH-HhhhhhhcccccccCCccceeeecchhhH
Confidence 00 000 024566555 3344455 689999 799999998 57788888888775554
Q ss_pred ccHHHHHHHHHHhcCC----CCCCCCCCc
Q psy9574 515 GSLERFIAILVENYSG----AMPLWLAPI 539 (783)
Q Consensus 515 G~ieRli~~LlE~~~~----~~P~~lap~ 539 (783)
. ++|+|.+|+|+|+. .+|..|.|+
T Consensus 405 A-~~R~l~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 405 A-TPRALCAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred h-hhHHHHHhHhhccCCCCccCCHhHHhh
Confidence 4 99999999999974 788888776
No 50
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.97 E-value=8e-30 Score=282.24 Aligned_cols=297 Identities=12% Similarity=0.065 Sum_probs=222.7
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-ee-CCceEEEcCCCcH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KS-ENRFYALKPMNCP 334 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~-~~~~~~LrP~~~~ 334 (783)
.++|+.|++|..+..++.|++.+++.+.++||++|.||+|++.++|.. +|.. ....||+| |. +|+.++|||+.|+
T Consensus 9 ~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~--~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 9 LPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQD--LKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCcc--chhceEEEEcCCCCcEEEECCcCCH
Confidence 489999999999999999999999999999999999999999999976 4553 34679998 66 5899999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
++++++++... ...|+|+||+|+|||++. ++.| |+|||+|+|+++||.++...+ .|++.++.++++.||++.
T Consensus 87 ~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~~--~~~g--r~rEf~Q~GvEiiG~~~~~aD--aEvi~l~~e~l~~lgi~~ 158 (392)
T PRK12421 87 QVARIDAHLLN--REGVARLCYAGSVLHTLP--QGLF--GSRTPLQLGAELYGHAGIEAD--LEIIRLMLGLLRNAGVPA 158 (392)
T ss_pred HHHHHHHhhcC--CCCceEEEEeeeEEEcCC--CcCC--CcCccceeceEEeCCCCchhH--HHHHHHHHHHHHHcCCCC
Confidence 99998876542 267999999999999998 6888 999999999999998876555 677999999999999988
Q ss_pred EEEEeecCCC-----CC----------------------------------------------CCChhhHHH--------
Q psy9574 415 IKIKLALRPN-----KR----------------------------------------------IGENNIWDL-------- 435 (783)
Q Consensus 415 ~~i~l~~~~~-----~~----------------------------------------------~g~~~~~~~-------- 435 (783)
+.+.+|++.. .. .|..+..+.
T Consensus 159 ~~l~ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~~ 238 (392)
T PRK12421 159 LHLDLGHVGIFRRLAELAGLSPEEEEELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLALQ 238 (392)
T ss_pred eEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhcccC
Confidence 9999986421 00 011111111
Q ss_pred ------HHHH---HHHHHHhc--CCceeec----CCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecC
Q psy9574 436 ------AENS---LREAISSS--GVTWEEF----PGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAEN 500 (783)
Q Consensus 436 ------~~~~---l~~~l~~~--g~~~~~~----~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~ 500 (783)
+.+. +.+.|+.. ++.+.++ .|.+||+|++||+...+ .+ ..+||| ||||.. ....
T Consensus 239 ~~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~vFe~~~~~-~~-~~i~~G--------GRYD~L-~~~f 307 (392)
T PRK12421 239 DAAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLVFAAYIPG-RG-QALARG--------GRYDGI-GEAF 307 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCEEEEEECC-CC-CcccCC--------CCccch-hHhh
Confidence 1122 23334444 4555554 47899999999997754 23 346777 999964 4555
Q ss_pred CcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHH
Q psy9574 501 NTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYK 580 (783)
Q Consensus 501 g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k 580 (783)
|+ ..|++ |+..++||++.++ +. .+ . .+++|++.++. ..+.++++.||+.|++|+++..+...
T Consensus 308 g~-~~pAv---Gfai~lerL~~~l-~~----~~---~-~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~~~~~--- 369 (392)
T PRK12421 308 GR-ARPAT---GFSMDLKELLALQ-FL----EE---E-AGAILAPWGDD--PDLLAAIAELRQQGERVVQLLPGDDG--- 369 (392)
T ss_pred CC-CCCCc---eEEeeHHHHHhhc-cc----cc---C-CceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCCCcch---
Confidence 64 47999 4444599999865 32 11 1 26777776654 35788999999999999998754222
Q ss_pred HHHhhcCCCCEEEEEc
Q psy9574 581 IRLHSLEKLPYIIIVG 596 (783)
Q Consensus 581 ~~~A~~~gip~~iivG 596 (783)
+| ..++...+++|
T Consensus 370 --~~-~~~~~~~~~~~ 382 (392)
T PRK12421 370 --SS-EPGCDHRLVLQ 382 (392)
T ss_pred --hH-HhCCCeEEEEE
Confidence 13 34666677776
No 51
>KOG2298|consensus
Probab=99.97 E-value=6.3e-31 Score=276.78 Aligned_cols=370 Identities=19% Similarity=0.233 Sum_probs=248.7
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCceEe---------e-------
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT---------K------- 320 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~---------~------- 320 (783)
..+|+|||.|.|+.+.++|.+.||+.|. .-+..||++|.|.|.++++.|||.|+|.+-|.+= |
T Consensus 34 GVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvkD~ktGecfRADHLvk~~~ 113 (599)
T KOG2298|consen 34 GVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVKDEKTGECFRADHLVKDAE 113 (599)
T ss_pred CcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhHHHhcCccccceehhhHHHHHHH
Confidence 3999999999999999999999999995 7799999999999999999999999998866520 0
Q ss_pred ----------------------------------------------------------------eCCceEEEcCCCcHHH
Q psy9574 321 ----------------------------------------------------------------SENRFYALKPMNCPGH 336 (783)
Q Consensus 321 ----------------------------------------------------------------~~~~~~~LrP~~~~~~ 336 (783)
.++-.-+|||++.+++
T Consensus 114 ~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG~ 193 (599)
T KOG2298|consen 114 ERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQGQ 193 (599)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccccc
Confidence 1334579999999999
Q ss_pred HHHHhcccc-cCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchh-HHHHHHHHHHHHHHHHhhc----
Q psy9574 337 IQIYNSNFH-SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ-IKNEIVVFNELVHKVYNEF---- 410 (783)
Q Consensus 337 ~~~~~~~~~-s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~-~~~e~~e~~~~~~~i~~~l---- 410 (783)
+..|++.+. +.+.||+..+++|+.||+|.| |+.||+|+|||+|+++|-|+.|.. +..-+.++.++-..+|..-
T Consensus 194 FlNFkrlle~N~~KlPFA~AqiG~~fRNEIS-pRsGLlRvrEF~maEIEHFvdP~~K~h~kF~~V~~~~l~l~~~~~q~~ 272 (599)
T KOG2298|consen 194 FLNFKRLLEFNQGKLPFASAQIGKSFRNEIS-PRSGLLRVREFTMAEIEHFVDPLLKSHPKFSLVAAEKLRLFPRDKQLS 272 (599)
T ss_pred cccHHHHHHhcCCCCcchHHHhchHhhhccC-cccCceeEEEeehHHhhccCCCCCCCChhhhhhhhhhhhhcchhhhhc
Confidence 999987654 556899999999999999998 999999999999999999999853 4444444443332222211
Q ss_pred CCeeEEEEeecCCCCCC--------------------C-------------------ChhhHHHHHHHHHHHHHhcCCc-
Q psy9574 411 GFKKIKIKLALRPNKRI--------------------G-------------------ENNIWDLAENSLREAISSSGVT- 450 (783)
Q Consensus 411 Gl~~~~i~l~~~~~~~~--------------------g-------------------~~~~~~~~~~~l~~~l~~~g~~- 450 (783)
|-....+.++....+.+ | +.+.||.....-....++.|+.
T Consensus 273 g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcVG~AD 352 (599)
T KOG2298|consen 273 GQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECVGCAD 352 (599)
T ss_pred cchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEeeccc
Confidence 11111111110000000 1 1123442222112222222221
Q ss_pred ---eeecC-----CC-----CCccccc-EEEEeec----CCCCeeeec------cee-e--------ecCc--ccccCce
Q psy9574 451 ---WEEFP-----GE-----GAFYGPK-IEYHLKD----SIGRSWQCG------TIQ-I--------DFSM--PHRLGAE 495 (783)
Q Consensus 451 ---~~~~~-----g~-----~~y~g~~-~e~~~~d----~~g~~~~~g------~~~-l--------D~~~--~~r~d~~ 495 (783)
|.+.- +. -..-.|+ ++..... .+|..+.-. +.. + -.++ -+-|.+.
T Consensus 353 Rs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~~~~~ 432 (599)
T KOG2298|consen 353 RAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGLLHMY 432 (599)
T ss_pred hhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCcEEEE
Confidence 10000 00 0000111 1111110 111100000 000 0 0000 0111110
Q ss_pred eeecC------C--------cccccEEEeecccccHHHHHHHHHHhcC---C-------CCCCCCCCceEEEEecCc--c
Q psy9574 496 YIAEN------N--------TRKTPVMLHRAIIGSLERFIAILVENYS---G-------AMPLWLAPIQVMILNISK--E 549 (783)
Q Consensus 496 y~~~~------g--------~~~~p~~i~~~~~G~ieRli~~LlE~~~---~-------~~P~~lap~qv~Vi~~~~--~ 549 (783)
-.+.+ + ..-.|-+|. +++| +.|++++|.||.- + .+|+.+||+++.|.|++. +
T Consensus 433 v~~l~k~~v~i~~~~k~~hV~e~~P~VIE-PSfG-iGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~e 510 (599)
T KOG2298|consen 433 VVNLSKLHVRIKRKTKVPHVREVNPDVIE-PSFG-IGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLE 510 (599)
T ss_pred EEecccceeeeeeeeeeeeEEeecCCccc-ccch-hhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchh
Confidence 00000 0 112566777 6778 9999999999853 1 799999999999999984 5
Q ss_pred hHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEE
Q psy9574 550 QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELR 629 (783)
Q Consensus 550 ~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~ 629 (783)
....+..|.+.|+++||.+-+|+++.|+|+++...+.+|||+-|.|..+.+++++||+|.
T Consensus 511 f~pv~~~ls~~L~~~gis~kvdds~~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlRe-------------------- 570 (599)
T KOG2298|consen 511 FRPVCQGLSNELTENGISVKVDDSSSSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRE-------------------- 570 (599)
T ss_pred HHHHHHHHHHHHHhCCCeEEecCCCCcHhhhhhccccccCceEEEEchhhhcCceEEEee--------------------
Confidence 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCcccccCCHHHHHHHHHHh
Q psy9574 630 LSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 630 li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
+|...+-.++++++...+.+.
T Consensus 571 ---RdS~~QvR~~i~e~~s~v~~~ 591 (599)
T KOG2298|consen 571 ---RDSTMQVRMHISKLKSFLIKY 591 (599)
T ss_pred ---cccHHHHHhhHHHHHHHHHHH
Confidence 888887889999988877654
No 52
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.97 E-value=1.5e-29 Score=277.22 Aligned_cols=259 Identities=16% Similarity=0.223 Sum_probs=205.4
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHH-HHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRK-IYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT 319 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~-~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 319 (783)
++|..+++.+||++- -.++|++.|.|.|++|+++|++++.+ .+.+.||+++.+|.|.+.++|.++||++.|.++||.+
T Consensus 195 ~~h~el~~k~glidk-~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~V 273 (520)
T TIGR00415 195 GDPTDEAEKLGWVKK-FPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYC 273 (520)
T ss_pred CCHHHHHHHCCCeeE-EcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEE
Confidence 789999999998863 44999999999999999999999975 5577899999999999999999999999999999987
Q ss_pred ee------------------------------CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEE-ecceeecCCCCC
Q psy9574 320 KS------------------------------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGE-FGQCHRNESSGS 368 (783)
Q Consensus 320 ~~------------------------------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~-~g~~fR~E~~g~ 368 (783)
.. ....++|+||+|++++.++++++.++++||+++++ +++|||+|.+ .
T Consensus 274 t~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaG-s 352 (520)
T TIGR00415 274 CAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAG-G 352 (520)
T ss_pred ecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCC-C
Confidence 32 22379999999999999999999999999999999 5589999996 4
Q ss_pred CCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCC--ChhhHHHHHHHHHHHHHh
Q psy9574 369 LHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIG--ENNIWDLAENSLREAISS 446 (783)
Q Consensus 369 ~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g--~~~~~~~~~~~l~~~l~~ 446 (783)
.+||+|+|||+|.|++.+|+++++.+++.++++.+.++++.|||+ +.+..++.| +++ ....|.
T Consensus 353 trGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lp-yrv~~adDP--Ff~~g~k~~~~------------ 417 (520)
T TIGR00415 353 AKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLE-WWTEVGDDP--FYLEGRKKEDR------------ 417 (520)
T ss_pred CCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEeecCCc--ccccccCcccc------------
Confidence 799999999999999999999999999999999999999999998 555543322 111 000010
Q ss_pred cCCceeecCCCCCccc-ccEE--EEeec----CCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccc-cHH
Q psy9574 447 SGVTWEEFPGEGAFYG-PKIE--YHLKD----SIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG-SLE 518 (783)
Q Consensus 447 ~g~~~~~~~g~~~y~g-~~~e--~~~~d----~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G-~ie 518 (783)
+-.|.+ .++| +.++. ..|+..+.++++ ..+++.+|+++ +|+... +|.+|+| |++
T Consensus 418 ----------dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~H-g~hF~k~F~I~----~~~~~~---a~ttC~G~gle 479 (520)
T TIGR00415 418 ----------GIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVH-GTHFIEGFRIK----DAKGLN---IWTGCTGIGIS 479 (520)
T ss_pred ----------cccCcccceEEEEEEEccccCCCCCcEEEEeech-hcccccccCcc----cCCCCe---EEEeeeeccHH
Confidence 001122 2233 33321 236677788888 66789999995 343333 4556666 479
Q ss_pred HHHHHHHHhcCC---CCCC
Q psy9574 519 RFIAILVENYSG---AMPL 534 (783)
Q Consensus 519 Rli~~LlE~~~~---~~P~ 534 (783)
|++++|+.+|+- .||.
T Consensus 480 R~i~Ali~~HG~d~~~Wp~ 498 (520)
T TIGR00415 480 RWIVGFLAQKGFEFDDWHD 498 (520)
T ss_pred HHHHHHHHHhCCChhhCCH
Confidence 999999998873 6775
No 53
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.96 E-value=1.7e-29 Score=249.71 Aligned_cols=152 Identities=32% Similarity=0.722 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhccccc-CC
Q psy9574 272 ILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHS-YR 348 (783)
Q Consensus 272 l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s-~~ 348 (783)
|+++|++++++.+. ++||++|.||.|.+.++|.+|||++.|.++||.+ +.++++++||||+|++++.++++...+ |+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 68999999999999 9999999999999999999999999999999999 456678999999999999999999998 99
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN 424 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~ 424 (783)
+||++++++|+|||+|. ++.+||+|+|||+|.|+|+||.++++.+++.++++++.++|+.|||+.+.+..+++..
T Consensus 81 ~LP~~~~~~g~~fR~E~-~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~ 155 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEA-RPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGE 155 (173)
T ss_dssp GSSEEEEEEEEEEBSSS-SSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCT
T ss_pred cCCeEEeeccccccccc-ccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCc
Confidence 99999999999999998 4999999999999999999999999999999999999999999999558888887654
No 54
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.95 E-value=9.6e-27 Score=245.45 Aligned_cols=235 Identities=21% Similarity=0.273 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
+.++++|++.+++.+.++||++|.||.|++.++|..++ ++...++||++ |.+|+.++|||+.|++++++++....+ .
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 57899999999999999999999999999999998765 56678999998 788999999999999999999987655 5
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC----
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN---- 424 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~---- 424 (783)
++|+|+||+|+|||+|. +..| |.|||+|.++++||.++...+ .|++.++.++++.+|++++.+.+++...
T Consensus 80 ~~p~k~~y~g~vfR~e~--~~~g--~~re~~Q~g~Eiig~~~~~~d--aE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l 153 (261)
T cd00773 80 PLPLKLYYIGPVFRYER--PQKG--RYREFYQVGVEIIGSDSPLAD--AEVIALAVEILEALGLKDFQIKINHRGILDGI 153 (261)
T ss_pred CCCeEEEEEcCEEecCC--CCCC--CccceEEeceeeeCCCChHHH--HHHHHHHHHHHHHcCCCceEEEECCHHHHHHH
Confidence 79999999999999998 4566 999999999999999766444 6789999999999999889999998652
Q ss_pred -CCCCChhhHH---------HHH---HHHHHHHHhcCC--ceeecC----CCCCcccccEEEEeecCCCCeeeecceeee
Q psy9574 425 -KRIGENNIWD---------LAE---NSLREAISSSGV--TWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQID 485 (783)
Q Consensus 425 -~~~g~~~~~~---------~~~---~~l~~~l~~~g~--~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD 485 (783)
...+.+..+. .+. +.+.+.|+..|+ .+.+++ |.+||+|..|++......+...+++|
T Consensus 154 ~~~~~~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~G---- 229 (261)
T cd00773 154 AGLLEDREEYIERLIDKLDKEALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGG---- 229 (261)
T ss_pred hhccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEECCCCccCeEeec----
Confidence 2223222211 122 344566677774 244444 67899999999987653224567777
Q ss_pred cCcccccCceeeecCCcccccEEEeecccccHHHHHHHH
Q psy9574 486 FSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAIL 524 (783)
Q Consensus 486 ~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~L 524 (783)
||||.. ....++...|++ |+.-++||++.+|
T Consensus 230 ----GRYD~L-~~~f~~~~~~av---Gfa~~~d~l~~~~ 260 (261)
T cd00773 230 ----GRYDGL-LEEFGGEDVPAV---GFAIGLERLLLAL 260 (261)
T ss_pred ----cCHHHH-HHHhCCCCCCeE---EEEEcHHHHHHhh
Confidence 999963 334334567888 4444599998765
No 55
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.94 E-value=3.6e-26 Score=247.14 Aligned_cols=238 Identities=22% Similarity=0.297 Sum_probs=185.9
Q ss_pred eEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHh
Q psy9574 263 IFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYN 341 (783)
Q Consensus 263 ~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~ 341 (783)
+||+|.++.+++.|++.+++.+.++||++|.||+|++.++|...++ ...++||++ |.+|+.++|||+.|++++++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 4799999999999999999999999999999999999999988665 367899998 7889999999999999999998
Q ss_pred cccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeec
Q psy9574 342 SNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLAL 421 (783)
Q Consensus 342 ~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~ 421 (783)
.... ..++|+|+||+|+|||+|. ++.| |.|||+|+|+|+||.++...+ .|++.++.++++.||++++.+.+++
T Consensus 79 ~~~~-~~~~p~r~~y~g~VfR~~~--~~~g--r~re~~Q~g~Eiig~~~~~ad--aEvi~l~~~~l~~lg~~~~~i~l~~ 151 (314)
T TIGR00443 79 TRLR-DRPLPLRLCYAGNVFRTNE--SGAG--RSREFTQAGVELIGAGGPAAD--AEVIALLIEALKALGLKDFKIELGH 151 (314)
T ss_pred Hhcc-cCCCCeEEEEeceEeecCC--CcCC--CcccccccceEEeCCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCc
Confidence 7654 4578999999999999998 5677 999999999999998877555 6889999999999999889999986
Q ss_pred CCC-----CCC----------------------------------------------CC-hhhHH------------HHH
Q psy9574 422 RPN-----KRI----------------------------------------------GE-NNIWD------------LAE 437 (783)
Q Consensus 422 ~~~-----~~~----------------------------------------------g~-~~~~~------------~~~ 437 (783)
... ..+ |+ .+..+ .+.
T Consensus 152 ~~il~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~l 231 (314)
T TIGR00443 152 VGLVRALLEEAGLPEEAREALREALARKDLVALEELLAELGLDPEVRERLLALPRLRGDGEEVLEEARALAGSETAEAAL 231 (314)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHHhccCHHHHHHH
Confidence 421 000 11 00000 011
Q ss_pred ---HHHHHHHHhcCCc--eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEE
Q psy9574 438 ---NSLREAISSSGVT--WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVM 508 (783)
Q Consensus 438 ---~~l~~~l~~~g~~--~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~ 508 (783)
+.+.+.|+..|++ +.+++ |.+||+|..|++...+ .+ ..++|| ||||-. ....| ...|++
T Consensus 232 ~~l~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGivFe~~~~~-~~-~~i~~G--------GRYD~L-~~~fg-~~~~Av 299 (314)
T TIGR00443 232 DELEAVLELLEARGVEEYISLDLGLVRGYHYYTGLIFEGYAPG-LG-APIAGG--------GRYDNL-LGRFG-RPLPAT 299 (314)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecccccCCCCccceEEEEEECC-CC-CcccCC--------ccHHHH-HHHcC-CCCCCc
Confidence 2233456666765 55544 6789999999998743 22 346776 999963 44555 457888
Q ss_pred EeecccccHHHHHHHH
Q psy9574 509 LHRAIIGSLERFIAIL 524 (783)
Q Consensus 509 i~~~~~G~ieRli~~L 524 (783)
|+.-+++|++.++
T Consensus 300 ---Gfa~~~d~l~~~l 312 (314)
T TIGR00443 300 ---GFALNLERLLEAL 312 (314)
T ss_pred ---eEEecHHHHHHHh
Confidence 4444599998765
No 56
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.93 E-value=4e-26 Score=238.79 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=150.7
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHHHcC--CeEeecCcccchHHHhh-hCCcccCCCCceEeeeCCceEEEcCCCcHH
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYKYNG--YKEIKTPQMLDLSLWKK-TGHWENYKDNMFTTKSENRFYALKPMNCPG 335 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G--~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~~~~~~~~LrP~~~~~ 335 (783)
++|+++|+|.|+.++++|+++|++.+.++| |++|.||++++.++|.. .|+++ .++++++||||+|++
T Consensus 21 ~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d----------~~~~~~~Lrp~~~~~ 90 (254)
T cd00774 21 VAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE----------SGGNLGYLRPETAQG 90 (254)
T ss_pred hhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC----------CCCcccccCCcccch
Confidence 799999999999999999999999999996 99999999999988876 36653 245689999999999
Q ss_pred HHHHHhcccccCC-CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 336 HIQIYNSNFHSYR-DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 336 ~~~~~~~~~~s~~-~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
++..+++...+++ +||+++||+|+|||+|.+ |++||+|+|||+|+|+|+||+++++.+++..+++.+.++|.++|++.
T Consensus 91 ~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~-~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~ 169 (254)
T cd00774 91 IFVNFKNLLEFNRRKLPFGVAQIGKSFRNEIS-PRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSP 169 (254)
T ss_pred HHHHHHHHHHHhCCCCCchhhhhchhhccccC-cccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCc
Confidence 9988888877665 999999999999999997 77999999999999999999999999999999999999999999975
Q ss_pred EEEEeecCCC--CCCCChhhHHHHHHHHHHHHHhcCCce
Q psy9574 415 IKIKLALRPN--KRIGENNIWDLAENSLREAISSSGVTW 451 (783)
Q Consensus 415 ~~i~l~~~~~--~~~g~~~~~~~~~~~l~~~l~~~g~~~ 451 (783)
-.+++...+. ..+-+.+.|+.-.......++..|+..
T Consensus 170 ~~~r~~~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~~ 208 (254)
T cd00774 170 ENLRLTDHEKEELAHYANETLDYFYAFPHGFLELEGIAN 208 (254)
T ss_pred cceEEEecccHhhhhhhHHHHHHHHHHhhhHHHHcCCCc
Confidence 5555544332 222234455544444445666666653
No 57
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.93 E-value=5.4e-25 Score=232.52 Aligned_cols=223 Identities=12% Similarity=0.106 Sum_probs=174.5
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHH
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGH 336 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~ 336 (783)
.++|++|++|..+.+++.|++.+++.+.++||++|.||+|++.+++.. ...++||++ |.+|+.++|||+.|+++
T Consensus 7 ~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~i 81 (281)
T PRK12293 7 IPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLDV 81 (281)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHHH
Confidence 499999999999999999999999999999999999999999998832 235789998 78899999999999999
Q ss_pred HHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEE
Q psy9574 337 IQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIK 416 (783)
Q Consensus 337 ~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~ 416 (783)
+++++.+... ..+|+|+||+|+|||+|. |||+|+|++++|.++. .|++.++.++++.+|++ +.
T Consensus 82 aR~~a~~~~~-~~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~-----~Evi~la~~~l~~lgl~-~~ 144 (281)
T PRK12293 82 VRIVTKRLGR-STEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL-----SEILNIAAEIFEELELE-PI 144 (281)
T ss_pred HHHHHHhccc-CCCceeEEEeccEEecCC----------CcccccCeEeeCCCCH-----HHHHHHHHHHHHHcCCC-CE
Confidence 9999866432 378999999999999973 7999999999999875 36799999999999997 57
Q ss_pred EEeecCCC-----CCCCCh-hhH---------------------------------------HHHHHHHHHHHHhcCC-c
Q psy9574 417 IKLALRPN-----KRIGEN-NIW---------------------------------------DLAENSLREAISSSGV-T 450 (783)
Q Consensus 417 i~l~~~~~-----~~~g~~-~~~---------------------------------------~~~~~~l~~~l~~~g~-~ 450 (783)
|+++++.. +.++.+ +.+ ..+.+.|.+.++..|. .
T Consensus 145 i~ig~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~ 224 (281)
T PRK12293 145 LQISNIKIPKLVAEILGLDIEVFKKGQIEKLLAQNVPWLNKLVRIKTLEDLDEVIELVPDEIKEELEKLKELAESIKYEN 224 (281)
T ss_pred EEECCHHHHHHHHHHcCCCHHHHhHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHcCCCc
Confidence 99986531 001100 000 0111344556666665 3
Q ss_pred eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHH
Q psy9574 451 WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILV 525 (783)
Q Consensus 451 ~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~Ll 525 (783)
+.+++ |.+||+|.+||+... | ..+||| ||||. ...|++ |+.-++||++.+|.
T Consensus 225 ~~~Dl~~vrgl~YYTGivFe~~~~---~-~~i~~G--------GRYD~--------~~~PAv---Gfa~~ld~l~~~l~ 280 (281)
T PRK12293 225 LVIAPLYYAKMRYYDDLFFRFFDG---N-STLASG--------GNYEI--------DGISSS---GFALYTDNLIEILL 280 (281)
T ss_pred EEEccccccCCCCccceEEEEEEC---C-ceeccc--------cCCCC--------CCCCcc---eEEeeHHHHHHHhh
Confidence 55544 789999999998764 2 257887 99992 347888 44445999998874
No 58
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.91 E-value=2e-23 Score=226.30 Aligned_cols=235 Identities=20% Similarity=0.274 Sum_probs=173.6
Q ss_pred CceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHH
Q psy9574 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQI 339 (783)
Q Consensus 261 G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~ 339 (783)
|++||+|..++.++.|++.+++.|.++||++|.||.|++.+++...+..+ .+++|++ |.+|+.++|||+.|++++++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999998644322 3589998 88999999999999999999
Q ss_pred HhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHh-hcCCeeEEEE
Q psy9574 340 YNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYN-EFGFKKIKIK 418 (783)
Q Consensus 340 ~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~-~lGl~~~~i~ 418 (783)
++.... ...|.|+||+|+|||++. ++.| |.|||+|+++++||.++...+ .|++.++.++++ .+|++.+.+.
T Consensus 79 ~a~~~~--~~~~~r~~y~g~vfR~~~--~~~g--~~re~~Q~g~Eiig~~~~~~d--aEvi~l~~e~l~~~l~~~~~~i~ 150 (311)
T PF13393_consen 79 VARNLN--LPRPKRYYYIGPVFRYER--PGKG--RPREFYQCGFEIIGSSSLEAD--AEVIKLADEILDRELGLENFTIR 150 (311)
T ss_dssp HHHCCG--SSSSEEEEEEEEEEEEET--TTTT--BESEEEEEEEEEESSSSHHHH--HHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHhcC--cCCCceEEEEcceeeccc--cCCC--CCceeEEEEEEEECCCCHHHH--HHHHHHHHHHHHhhcCCCCcEEE
Confidence 997643 578999999999999997 5677 999999999999999865544 677999999997 9999889999
Q ss_pred eecCCC-----CCCC----------------------------------------------ChhhH-------------H
Q psy9574 419 LALRPN-----KRIG----------------------------------------------ENNIW-------------D 434 (783)
Q Consensus 419 l~~~~~-----~~~g----------------------------------------------~~~~~-------------~ 434 (783)
+|+... ..+| ..+.. .
T Consensus 151 i~h~~i~~~il~~~gl~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~~ 230 (311)
T PF13393_consen 151 INHTGILDAILEHLGLPEDLRRELLEALDKKDLSELKELLSELGLSSESLEILDKLPELEGDPEALEELLESLPSSPALQ 230 (311)
T ss_dssp EEEHHHHHHHHHHTTHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHSHHHHHHHHHHHTCSCHHH
T ss_pred EcCchhhHHHHhhcCCChhhhhhhhhheeccccccchhhhcccccchhhhhhhhccccccchHHHHHHHHHHHhhhhhhH
Confidence 996421 0011 00000 0
Q ss_pred HHH---HHHHHHHHhcC---CceeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCccc
Q psy9574 435 LAE---NSLREAISSSG---VTWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRK 504 (783)
Q Consensus 435 ~~~---~~l~~~l~~~g---~~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~ 504 (783)
.+. +.+.+.|+..| ..+.+++ |.+||+|+.|++...+ .+. .+++| ||||.. ....| ..
T Consensus 231 ~~~~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~vFe~~~~~-~~~-~ia~G--------GRYD~L-~~~fg-~~ 298 (311)
T PF13393_consen 231 EALEELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGIVFEVYAPG-RGS-PIAGG--------GRYDNL-LEQFG-KP 298 (311)
T ss_dssp HHHHHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESEEEEEEETT-SSS-ESEEE--------EEETTH-HHHTT-SS
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEChhhccchhhcCCEEEEEEEcC-CCc-eEecc--------cChhHH-HHHhC-CC
Confidence 111 34455667776 5566665 6789999999998754 233 56676 999964 44555 45
Q ss_pred ccEEEeecccccHHHH
Q psy9574 505 TPVMLHRAIIGSLERF 520 (783)
Q Consensus 505 ~p~~i~~~~~G~ieRl 520 (783)
.|++ |+.-.+|||
T Consensus 299 ~~Av---Gfai~ld~L 311 (311)
T PF13393_consen 299 IPAV---GFAIGLDRL 311 (311)
T ss_dssp -EEE---EEEEEHHHH
T ss_pred CceE---EEEEEeccC
Confidence 7888 444458885
No 59
>PF00707 IF3_C: Translation initiation factor IF-3, C-terminal domain; InterPro: IPR019815 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2IFE_A 1TIG_A 2CRQ_A.
Probab=99.90 E-value=5.4e-24 Score=184.40 Aligned_cols=87 Identities=51% Similarity=0.877 Sum_probs=81.7
Q ss_pred cceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCccccCeeEE
Q psy9574 695 ILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQMI 774 (783)
Q Consensus 695 ~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 774 (783)
+++|||+|+|+|++|||++|++||++||++||+|+|+|+||||+++++|.+.+++++|.+.|+++|.++++|+++|++|+
T Consensus 2 ~~~KEi~~~~~I~~hDl~~K~k~~~~fL~kG~~Vkv~i~~rgr~~~~~e~~~~~l~~i~~~l~~~~~~~~~~~~~g~~~~ 81 (88)
T PF00707_consen 2 VKVKEIRFSPNIDEHDLETKLKQAKKFLEKGHKVKVVIRFRGREMAHPELGEEVLERIIEELKDVGKVEKKPKMEGKQMS 81 (88)
T ss_dssp SEEEEEEEETT--HHHHHHHHHHHHHHHHTTEEEEEEEE-SSTTTTHHHHHHHHHHHHHHHCTTTEEEEEEEEECCCCEE
T ss_pred ceEEEEEEecCcChhHHHHHHHHHHHHHHCCCEEEEEEEecCccccchHHHHHHHHHHHHHHhhhcEEeecccccCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecC
Q psy9574 775 MILSPRK 781 (783)
Q Consensus 775 ~~~~p~~ 781 (783)
|+|.|+|
T Consensus 82 ~~l~P~k 88 (88)
T PF00707_consen 82 MILSPKK 88 (88)
T ss_dssp EEEEES-
T ss_pred EEEEeCC
Confidence 9999986
No 60
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.89 E-value=2.2e-22 Score=220.59 Aligned_cols=136 Identities=13% Similarity=0.207 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
.++|.+.+++.|.++||.+|.||.|++.+++.. +|. ...++||++ |.+|+.++|||+.|+++++++..+ . ...
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~-~--~~~ 81 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENGEELCLRPDFTIPVCRRHIAT-A--GGE 81 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHc-C--CCC
Confidence 458999999999999999999999999999875 454 345789998 888999999999999999987654 1 367
Q ss_pred CceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hHHHHHHHHHHHHHHHHhhcCCeeEEEEeecC
Q psy9574 351 PLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QIKNEIVVFNELVHKVYNEFGFKKIKIKLALR 422 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~ 422 (783)
|+|+||+|+|||+| .| |.|||+|+|+++||.++ ...+ .|++.++.++++.+|++++.+.++++
T Consensus 82 p~R~~Y~g~VfR~~-----~g--r~rEf~Q~GvEiiG~~~~~~aD--aEvi~l~~~~L~~lgl~~~~i~ig~~ 145 (373)
T PRK12295 82 PARYAYLGEVFRQR-----RD--RASEFLQAGIESFGRADPAAAD--AEVLALALEALAALGPGDLEVRLGDV 145 (373)
T ss_pred CeEEEEEccEEECC-----CC--CCCcceEeeEEeeCCCCCccch--HHHHHHHHHHHHHcCCCceEEEeCCH
Confidence 99999999999998 35 99999999999999754 3333 56799999999999998899998853
No 61
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=99.88 E-value=3.1e-23 Score=172.28 Aligned_cols=75 Identities=53% Similarity=0.875 Sum_probs=61.5
Q ss_pred CCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHhHHhh
Q psy9574 615 PKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKAHEVK 689 (783)
Q Consensus 615 ~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~~~~~ 689 (783)
+++++|++|++++|||||++|+.+|+|++++|+++|++.++|||+|+|+++|||||||||+||+|+++||.+++|
T Consensus 2 ~~~~iNe~I~~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~dy~k~~ye~~kk~ke~k 76 (76)
T PF05198_consen 2 DKPRINEEIRAPEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMDYGKYKYEQKKKAKEAK 76 (76)
T ss_dssp ----BGGG---SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-HHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCCEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEechHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999998865
No 62
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.83 E-value=1.1e-19 Score=195.50 Aligned_cols=303 Identities=15% Similarity=0.179 Sum_probs=212.3
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CCcccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GHWENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~~~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
..+.|++|.+|..+....+|.+.+++.|.++||+.|.||+|++.+.+... |+ .-...||++ |..|+.+||||+.|+
T Consensus 4 ~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g~~l~LRpD~T~ 81 (390)
T COG3705 4 QLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETGGRLGLRPDFTI 81 (390)
T ss_pred cCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCCCeEEecccccH
Confidence 45899999999999999999999999999999999999999999999764 55 335789998 788889999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
++++++.+...+ .|.|++|.|+|||... ..+| |..||+|.++|++|.+.-..+ .|++.++..+++.+|+.+
T Consensus 82 pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~--~~~g--~~~Ef~QaGiEllG~~~~~AD--aEvi~la~~~L~~~gl~~ 152 (390)
T COG3705 82 PVARIHATLLAG---TPLRLSYAGKVFRARE--GRHG--RRAEFLQAGIELLGDDSAAAD--AEVIALALAALKALGLAD 152 (390)
T ss_pred HHHHHHHHhcCC---CCceeeecchhhhcch--hccC--cccchhhhhhHHhCCCcchhh--HHHHHHHHHHHHHcCCcC
Confidence 999999987654 8999999999999984 4777 888999999999999665444 567999999999999999
Q ss_pred EEEEeecCCC-------------------CCC--------------------------------CChhhHHHHH------
Q psy9574 415 IKIKLALRPN-------------------KRI--------------------------------GENNIWDLAE------ 437 (783)
Q Consensus 415 ~~i~l~~~~~-------------------~~~--------------------------------g~~~~~~~~~------ 437 (783)
+++.+++... ..+ |..+....+.
T Consensus 153 ~~l~LG~~gif~all~~~~l~~~~~~~L~~a~~~k~~~~~~~~~~~~~~~~~~~~~l~~l~~l~gg~e~l~~~~~~l~~~ 232 (390)
T COG3705 153 LKLELGHAGIFRALLAAAGLPGGWRARLRRAFGDKDLLGLELLVLAAPLSPELRGRLSELLALLGGREVLERARGLLDEL 232 (390)
T ss_pred eEEEeccHHHHHHHHHHcCCChhHHHHHHHHHhccchhhHHHHhhccCCChhhhHHHHHHHHHhCCHHHHHHHHHhhhhh
Confidence 9999985210 000 1111111111
Q ss_pred ----------HHHHHHHHhcCCceee----cCCCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcc
Q psy9574 438 ----------NSLREAISSSGVTWEE----FPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTR 503 (783)
Q Consensus 438 ----------~~l~~~l~~~g~~~~~----~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~ 503 (783)
..+.++....+.++.+ .+..+||+|..|+.. .+..+... +++ +|||.. -+.++..
T Consensus 233 ~~~~~al~~~~~l~di~~~~~e~i~lDLg~l~~~~YyTg~~F~ay-~~~~~~al-~~G--------GRYd~l-~~~f~~~ 301 (390)
T COG3705 233 MAQGIALNEGRALADIARRLIEKIALDLGRLRHFDYYTGLVFLAY-ADGLGDAL-ASG--------GRYDGL-LGLFGRA 301 (390)
T ss_pred hhhhhhhhhhhhHHHHHhccchhheehhhcccccchhhceeeeee-eccccchh-hcc--------cchhhh-hhhcCcc
Confidence 2223333332322333 334578889888876 34444433 343 899952 3344433
Q ss_pred cccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCC-CeEEEECCCccHHHHHH
Q psy9574 504 KTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKK-FRVEVDLRNEKIAYKIR 582 (783)
Q Consensus 504 ~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~g-i~v~~d~~~~~l~~k~~ 582 (783)
.|.+ |+.--+++ |.+ +.+|....++.+.+.+..+.....+.+++++++.+| .++.=++.. ++ .
T Consensus 302 -~pat---Gf~~~l~~----l~~---~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~r~~g~~~~~~l~~g--~~---~ 365 (390)
T COG3705 302 -APAT---GFALRLDA----LAQ---GGLPLEERRYAALFGRELDYYTGAAFEAAQALRLAGGGRYDRLLTG--LG---A 365 (390)
T ss_pred -ccch---hhHhhHHH----HHh---cCCCcccchhhhccCccchhhHHHHHHHHHHhcccCCeEEEecccc--cc---h
Confidence 4666 33222444 433 356766777777777666666788999999999554 444333322 22 3
Q ss_pred HhhcCCCCEEEEEcc
Q psy9574 583 LHSLEKLPYIIIVGN 597 (783)
Q Consensus 583 ~A~~~gip~~iivG~ 597 (783)
.+...++.+.+.+..
T Consensus 366 ~~~~~~~~~~~~~~~ 380 (390)
T COG3705 366 SEEIPGVGFSLWLDR 380 (390)
T ss_pred HhhhcccceeEeecc
Confidence 344556677666654
No 63
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.77 E-value=9.4e-18 Score=171.00 Aligned_cols=208 Identities=24% Similarity=0.376 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 272 l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
+++.+++.+++.+...||+||.||.|++.+.+...|..+ +.+... +..++..+|||+.++++..+++.+. +++
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~ 74 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKL 74 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccC
Confidence 367899999999999999999999999998887766542 233333 5667889999999999999998776 689
Q ss_pred CceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe-eEEEEeecCCCCCCCC
Q psy9574 351 PLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK-KIKIKLALRPNKRIGE 429 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~-~~~i~l~~~~~~~~g~ 429 (783)
|+|+|++|+|||.|.+ ..++.|++||+|.++++++.+.+....+.++..++.++++.+|++ .+.+.......
T Consensus 75 ~~~lfeig~vfr~e~~--~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~----- 147 (211)
T cd00768 75 PLRLAEIGPAFRNEGG--RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGE----- 147 (211)
T ss_pred CEEEEEEcceeecCCC--ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCchh-----
Confidence 9999999999999974 232568999999999999987654345688899999999999973 23332121110
Q ss_pred hhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeeccee-eecCcccccCceeeecCCcccccEE
Q psy9574 430 NNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVM 508 (783)
Q Consensus 430 ~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~ 508 (783)
.| .++.|+..++.+.+..++...+|++. +..+...+|++.|.+.+++...|.+
T Consensus 148 --~~------------------------~~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~ 201 (211)
T cd00768 148 --FS------------------------PGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPT 201 (211)
T ss_pred --hc------------------------cccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheecccccccCcee
Confidence 00 02456667777766666666677765 3444457799999988888889999
Q ss_pred EeecccccHHHH
Q psy9574 509 LHRAIIGSLERF 520 (783)
Q Consensus 509 i~~~~~G~ieRl 520 (783)
+|+| +|+||+
T Consensus 202 ~~~~--~~~~R~ 211 (211)
T cd00768 202 IGFG--LGLERL 211 (211)
T ss_pred ecCc--cCccCC
Confidence 9977 569985
No 64
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.76 E-value=5.1e-18 Score=192.52 Aligned_cols=127 Identities=21% Similarity=0.315 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEEcC-cccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHH
Q psy9574 68 LNIIRHSTAHLLAYAVKNLFPDSQIAIGP-VIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIA 146 (783)
Q Consensus 68 ~~~y~hS~~~lL~~A~~~l~p~~~~~~~~-s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~ 146 (783)
..+-+||++|||++|++++||....+.|. ...+++||||+.+.++|++++.+||++||++|++|+||+..+++++||.+
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~ 531 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEARE 531 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHh
Confidence 57789999999999999999876666674 44689999999878899999999999999999999999999999999998
Q ss_pred HhhhcchHHHHHhhccCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 147 YFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 147 ~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
... ..++..... +.||+|++|+| .++|+||||+|||+||.|+|++.++
T Consensus 532 ~~~-------~~lf~e~y~-~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s 580 (594)
T PRK01584 532 KGA-------MALFGEKYE-DIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQS 580 (594)
T ss_pred cch-------hhhccccCC-CcEEEEEECCeeeeCCCCCCCCCcccCceEEEEeccc
Confidence 532 233433223 48999999998 8999999999999999999999754
No 65
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.67 E-value=3.8e-16 Score=145.34 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=95.4
Q ss_pred HHhcCC----CCCCCCCCceEEEEecC---cchHHHHHHHHHHhHhCCCeEEEECCCc---cHHHHHHHhhcCCCCEEEE
Q psy9574 525 VENYSG----AMPLWLAPIQVMILNIS---KEQIEYAKKVFNFLKSKKFRVEVDLRNE---KIAYKIRLHSLEKLPYIII 594 (783)
Q Consensus 525 lE~~~~----~~P~~lap~qv~Vi~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~---~l~~k~~~A~~~gip~~ii 594 (783)
+|++++ .||+.+||+||.|+|+. ++..++|.+|++.|+++|++|.+|+++. ++|+||++|+++|+||+|+
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~~I~ 89 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLFTLL 89 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCEEEE
Confidence 366654 89999999999999994 4578999999999999999999999875 8999999999999999999
Q ss_pred EcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 595 VGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 595 vG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
||++.+++|+|++++ +++.....++++++.+.+.+.
T Consensus 90 IG~~~l~~g~vei~~-----------------------Rdt~~k~~v~~~~l~~~i~~~ 125 (128)
T cd02426 90 ISEQTLENGLLQLRS-----------------------RDTTLKETIHISDLPDYLLRY 125 (128)
T ss_pred ECCCcccCCEEEEEE-----------------------CCCCceEEEeHHHHHHHHHHH
Confidence 999999999999999 776666899999999888654
No 66
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=7.8e-16 Score=179.07 Aligned_cols=125 Identities=26% Similarity=0.421 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEcCcc--cCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHH
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPDSQIAIGPVI--ENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIA 146 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~--~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~ 146 (783)
-+-+||++|||.+|+++++ |.++....|+ .+..++||.+.+++|.|+|.+||+.+|++|.+|+|+...+|++++|.+
T Consensus 563 ~~~nHTATHLLh~ALr~VL-G~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~ 641 (879)
T COG0013 563 LMRNHTATHLLHAALRKVL-GDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKA 641 (879)
T ss_pred HHhhChHHHHHHHHHHHHh-CccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHH
Confidence 4568999999999999999 5556665555 356899999988999999999999999999999999999999999988
Q ss_pred HhhhcchHHHHHhhccCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 147 YFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 147 ~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
. .-.-|+...+. +.|||+++|+| +++|+||||.|||+||.|+|++.++
T Consensus 642 ~-------Ga~alfGekY~-~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~ 690 (879)
T COG0013 642 K-------GAMALFGEKYG-DEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEG 690 (879)
T ss_pred h-------ChHhhcCCcCC-CeEEEEEECCceeeccCCcccCCccceeeEEEEEecc
Confidence 4 22345666666 49999999998 7999999999999999999999765
No 67
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.66 E-value=1.2e-15 Score=182.58 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=114.7
Q ss_pred ccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcC-cccCcEEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy9574 50 VIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGP-VIENGFYYDFLYKRSFTKEDLILIEKKMIELS 128 (783)
Q Consensus 50 ~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~-s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI 128 (783)
++..+..|+..--....-..+-+||++|||++|++++|+......|. ...+++|+||....++|++++.+||++||++|
T Consensus 537 ~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNelI 616 (851)
T TIGR00344 537 SLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQI 616 (851)
T ss_pred CCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 34445555554434444556789999999999999999433223343 34688999999877899999999999999999
Q ss_pred hcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 129 QKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 129 ~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
.+|+||...+++++||.+++.. .++..... +.||+|++|++ .++|+||||+|||+|+.|+|++.++
T Consensus 617 ~~n~pV~~~~~~~eeA~~~~~~-------~~~~e~y~-~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~~ 683 (851)
T TIGR00344 617 LANIPIKVIFMDLDEAKAKGAF-------ALFGEKYG-EKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKESG 683 (851)
T ss_pred HhCCceEEEEeCHHHHHhcchh-------hhcCCCCC-CeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEeE
Confidence 9999999999999999986543 23332223 48999999996 6899999999999999999999764
No 68
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.66 E-value=6.7e-16 Score=155.69 Aligned_cols=99 Identities=26% Similarity=0.342 Sum_probs=89.9
Q ss_pred CCCCCCCCceEEEEecCcc------hHHHHHHHHHHhHhCCCeEEEECCCc-cHHHHHHHhhcCCCCEEEEEcccccccC
Q psy9574 531 AMPLWLAPIQVMILNISKE------QIEYAKKVFNFLKSKKFRVEVDLRNE-KIAYKIRLHSLEKLPYIIIVGNKELCEN 603 (783)
Q Consensus 531 ~~P~~lap~qv~Vi~~~~~------~~~~a~~i~~~Lr~~gi~v~~d~~~~-~l~~k~~~A~~~gip~~iivG~~e~~~~ 603 (783)
.||+|+||+||+|+|++.. ..++|.+|++.|+++|++|++|+++. ++|+||++|++.|+|++|+||++|+++|
T Consensus 3 vlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele~g 82 (202)
T cd00862 3 VLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLEKN 82 (202)
T ss_pred cCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhhCC
Confidence 6999999999999999755 78999999999999999999999987 9999999999999999999999999999
Q ss_pred ceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 604 KITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 604 ~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
+|+|++ +++.....++++++.+.+.+
T Consensus 83 ~V~v~~-----------------------Rd~~ek~~v~~~el~~~i~~ 108 (202)
T cd00862 83 TVVIVR-----------------------RDTGEKKTVPLAELVEKVPE 108 (202)
T ss_pred EEEEEE-----------------------ecCCcceEEEHHHHHHHHHH
Confidence 999999 44444578999998877753
No 69
>PLN02900 alanyl-tRNA synthetase
Probab=99.66 E-value=2e-15 Score=180.96 Aligned_cols=155 Identities=20% Similarity=0.261 Sum_probs=119.5
Q ss_pred CCEEeec----ccccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCc-ccCcEEEEEecCCCCCHH
Q psy9574 41 NGVLVDL----SYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPV-IENGFYYDFLYKRSFTKE 115 (783)
Q Consensus 41 n~~~~~L----~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s-~~~g~y~d~~~~~~~t~e 115 (783)
||..+.. ..++..+..|+..--....-..+-+||++|||++|++++|+......|.. ..+.+++||+.+.++|++
T Consensus 562 ~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~e 641 (936)
T PLN02900 562 GGFVLHIGTVTEGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641 (936)
T ss_pred CCEEEEEEEeccCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHH
Confidence 5555544 22344555666555455556678899999999999999995433334443 467899999988899999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCE--EEeccccccCCCCCcc
Q psy9574 116 DLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSF--VDLCRGPHVFSTGKLK 193 (783)
Q Consensus 116 ~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~--~d~c~Gp~v~~Tg~i~ 193 (783)
++.+||++||++|.+|+||+..+++++||.++... ..++..... +.||++.+|++ .++|+||||+|||+||
T Consensus 642 el~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~------~~~f~e~y~-~~VRVV~Ig~~~d~elCGGTHV~nTgeIG 714 (936)
T PLN02900 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGL------RAVFGEKYP-DPVRVVSVGGVYSMELCGGTHVSNTAEAE 714 (936)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccCh------HhhcCCCCC-CcEEEEEECCccceeCCCCCcCCccccCc
Confidence 99999999999999999999999999999883221 112222223 38999999995 6889999999999999
Q ss_pred eEEEEeecC
Q psy9574 194 IFKLIKLAG 202 (783)
Q Consensus 194 ~f~l~~~~~ 202 (783)
.|+|++.++
T Consensus 715 ~fkIls~~~ 723 (936)
T PLN02900 715 AFKLLSEEG 723 (936)
T ss_pred eEEEEEEee
Confidence 999999764
No 70
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.64 E-value=2.5e-15 Score=180.67 Aligned_cols=144 Identities=22% Similarity=0.311 Sum_probs=113.6
Q ss_pred cCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEE-cCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy9574 51 IDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAI-GPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQ 129 (783)
Q Consensus 51 i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~-~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~ 129 (783)
+..+..|+..--....-..+-+||++|||++|++++|+...... ++...+++++||..+.++|++++.+||++||++|.
T Consensus 531 l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel~~IE~~vN~lI~ 610 (865)
T PRK00252 531 LKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIR 610 (865)
T ss_pred CCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 44455555544344444567899999999999999995432233 34446889999998778999999999999999999
Q ss_pred cCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECC-EEEeccccccCCCCCcceEEEEeecC
Q psy9574 130 KNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGS-FVDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 130 ~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~-~~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
+|+||...+++++||.+... ..++..... +.||+|++|+ .+++|+||||+|||+|+.|+|++.++
T Consensus 611 ~n~pV~~~~~~~~eA~~~~~-------~~~~~~~y~-~~VRVV~Ig~~d~~~CgGTHV~nTgeIg~~kI~~~~~ 676 (865)
T PRK00252 611 ENLPVETEEMSIEEAKKMGA-------MALFGEKYG-DEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVSESG 676 (865)
T ss_pred hCCCeEEEEeCHHHHHhCCc-------hhhccccCC-CeEEEEEECCceeeCCCCCccCCcccCeEEEEEEEee
Confidence 99999999999999987321 223333333 4899999999 47999999999999999999999764
No 71
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.63 E-value=5.4e-15 Score=154.86 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCc-eEe-eeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNM-FTT-KSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~m-y~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
.-++.|++.+++.|.++||++|.||+||+.+++..+++ ...+.+ +.+ +.+|+.++|||+.|++++++++...
T Consensus 8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~--~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~---- 81 (272)
T PRK12294 8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHE--DLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP---- 81 (272)
T ss_pred HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhcccc--chhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC----
Confidence 45688999999999999999999999999999854443 222333 445 5689999999999999999987542
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEE-EEeec
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIK-IKLAL 421 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~-i~l~~ 421 (783)
.-|.|+||+|+|||++. +|+|++++++|.+..+. .+++.++.+.+..+|...+. +.+++
T Consensus 82 ~~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~---~e~l~la~~~l~~~g~~~~~~i~lGh 141 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANV---QQSFKLFIQFIQQQLRDNVHFVVLGH 141 (272)
T ss_pred CCCceEEEeccEeccCC-----------CcceeceEEECCCchhH---HHHHHHHHHHHHHhCCCCCcEEEecc
Confidence 23679999999999985 28999999999543233 45679999999999776443 56654
No 72
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.62 E-value=1e-14 Score=175.07 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=115.0
Q ss_pred cCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcc-cCcEEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy9574 51 IDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVI-ENGFYYDFLYKRSFTKEDLILIEKKMIELSQ 129 (783)
Q Consensus 51 i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~ 129 (783)
+..+..|+..--....-..+-+||++|||++|++++|+....+.|..+ .+.+++||....++|++++.+||+.+|++|.
T Consensus 575 l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~ 654 (902)
T TIGR03683 575 IKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVM 654 (902)
T ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 344555555444444556778999999999999999954323334444 5789999997778999999999999999999
Q ss_pred cCCCeEEEEcCHHHHHHHhhhcchHHHHHhhcc-CCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 130 KNELFLKKNITRDKAIAYFDSVNEQFKKKIINL-IPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 130 ~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~-~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
+|+||+..+++++||.+.+. ..++.. .+.++.|||+++|++ +++|+||||+|||+||.|+|++.++
T Consensus 655 ~n~pV~~~~~~~~eA~~~~~-------~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~~~ 722 (902)
T TIGR03683 655 ENRPVSVKWMDRNEAEQKYG-------FRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKTER 722 (902)
T ss_pred hCCCeEEEEeCHHHHHhcCc-------hhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEEEEEEE
Confidence 99999999999999988543 234422 222358999999997 6999999999999999999999764
No 73
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.62 E-value=1e-14 Score=174.86 Aligned_cols=142 Identities=19% Similarity=0.270 Sum_probs=111.9
Q ss_pred CceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcc-cCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCC
Q psy9574 54 DVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVI-ENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNE 132 (783)
Q Consensus 54 ~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~ 132 (783)
+..|+..--....-..+-+||++|||++|++++|+....+.|..+ .+.+++||....++|++++.+||+.||++|.+|+
T Consensus 574 G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~ 653 (900)
T PRK13902 574 GDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENR 653 (900)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 444444433333344566799999999999999954333444444 5789999998778999999999999999999999
Q ss_pred CeEEEEcCHHHHHHHhhhcchHHHHHhhcc-CCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 133 LFLKKNITRDKAIAYFDSVNEQFKKKIINL-IPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 133 pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~-~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
||...+++++||.+.+. ..++.. .+.++.|||+++|+| .++|+||||+|||+||.|+|++.+.
T Consensus 654 pV~~~~~~~~eA~~~~~-------~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~e~ 718 (900)
T PRK13902 654 PVKVEWMDRNEAEQKYG-------FRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTER 718 (900)
T ss_pred CEEEEecCHHHHHhccc-------hhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEEEE
Confidence 99999999999988543 234421 223458999999997 7999999999999999999999764
No 74
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.60 E-value=5.3e-15 Score=137.11 Aligned_cols=98 Identities=24% Similarity=0.265 Sum_probs=88.6
Q ss_pred CCCCCCCCceEEEEecC--cchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEE
Q psy9574 531 AMPLWLAPIQVMILNIS--KEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITER 608 (783)
Q Consensus 531 ~~P~~lap~qv~Vi~~~--~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr 608 (783)
.||+|++|++|+|+|.+ ++...+|.+++..||++|++|++|.+ .++++++++|++.|+||++|||++|+++++|+|+
T Consensus 19 ~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk 97 (121)
T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIR 97 (121)
T ss_pred EcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEE
Confidence 79999999999999999 88889999999999999999999999 9999999999999999999999999999999999
Q ss_pred EeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 609 EIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 609 ~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
++ .+|++ ..++++++.+.+.+
T Consensus 98 ~l----------------------~~~~~-~~v~l~~l~~~l~~ 118 (121)
T cd00858 98 ER----------------------DSMRQ-VRVKIEELPSYLRE 118 (121)
T ss_pred EC----------------------CCCce-EEEEHHHHHHHHHH
Confidence 94 44444 57788887666643
No 75
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.58 E-value=1.2e-14 Score=155.04 Aligned_cols=112 Identities=27% Similarity=0.446 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcC----CCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEE
Q psy9574 517 LERFIAILVENYS----GAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYI 592 (783)
Q Consensus 517 ieRli~~LlE~~~----~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~ 592 (783)
++|++.+++.+.. +.||+|++|.||+|+|++++..++|.++++.||++|++|++|+++.++++|+++|++.|+|++
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK~GaPfv 328 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPFV 328 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEE
Confidence 8898888766532 599999999999999999888899999999999999999999998999999999999999999
Q ss_pred EEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHH
Q psy9574 593 IIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAE 651 (783)
Q Consensus 593 iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~ 651 (783)
|+||++|+++|+|+||++ .+|++ ..++++++.+.++
T Consensus 329 IIIGedEle~gtVtIKdr----------------------dTgEQ-~~IsLdELie~Lk 364 (387)
T PRK14938 329 IIIGEREVKTSTLTVKIR----------------------ANNEQ-KSMTVEELVKEIK 364 (387)
T ss_pred EEECchhhhCCeEEEEEC----------------------CCCce-EEEeHHHHHHHHH
Confidence 999999999999999994 44544 6889999888777
No 76
>PLN02961 alanine-tRNA ligase
Probab=99.56 E-value=3.4e-14 Score=145.62 Aligned_cols=143 Identities=15% Similarity=0.222 Sum_probs=107.9
Q ss_pred ccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHH-CCCCeEEEcCcccCcEEEEEecCCCCCHHH----HHHHHHHH
Q psy9574 50 VIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNL-FPDSQIAIGPVIENGFYYDFLYKRSFTKED----LILIEKKM 124 (783)
Q Consensus 50 ~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l-~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~----l~~Ie~~m 124 (783)
++..+..|+..--....-.-+-.||++|||++|++++ ++....+.+++..++.|+|+. ..++.++ +.+||+++
T Consensus 63 ~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~~~~~v~~~--~~i~~~~~~~~~~~iE~~~ 140 (223)
T PLN02961 63 PFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEYK--GKIPQGELDSKQDELEAEA 140 (223)
T ss_pred CCCCCCEEEEEECHHHHhhhhccCcHHHHHHHHHHHcCCCccccccccccCCccceeec--ccCCHHHHHhHHHHHHHHH
Confidence 4555666666554455556677899999999999997 654444566667778888875 3466655 47999999
Q ss_pred HHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCEEEe-ccccccCCCCCcceEEEEeec
Q psy9574 125 IELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDL-CRGPHVFSTGKLKIFKLIKLA 201 (783)
Q Consensus 125 ~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~~d~-c~Gp~v~~Tg~i~~f~l~~~~ 201 (783)
|++|.+++||+..+++++||.++... ..+ ...+..+.||+++++++... |+||||.|||+|+.|+|++.+
T Consensus 141 N~~I~~~~~V~~~~~~~~ea~~~~~~-~~~------~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~ 211 (223)
T PLN02961 141 NELIAEGGKVSAAVLPYDEAAELCGG-SLP------DYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIR 211 (223)
T ss_pred HHHHHcCCceeEEEeCHHHHHHhcCC-cCC------CcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEEE
Confidence 99999999999999999999885321 011 11222358999999998644 999999999999999999874
No 77
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.56 E-value=8.8e-15 Score=129.36 Aligned_cols=90 Identities=31% Similarity=0.490 Sum_probs=84.0
Q ss_pred eEEEEecCc---chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCC
Q psy9574 540 QVMILNISK---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPK 616 (783)
Q Consensus 540 qv~Vi~~~~---~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~ 616 (783)
||+|+|+++ +..++|.++++.|+++|++|++|+++.++++|+++|+..|+||+++||++|+++|+|+||+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~------- 73 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKD------- 73 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEE-------
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEE-------
Confidence 799999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 617 HRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 617 ~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
.++.....|+++++.+.+++
T Consensus 74 ----------------~~~~~~~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 74 ----------------RDTGEQETVSLEELIEYLKE 93 (94)
T ss_dssp ----------------TTTTEEEEEECCHHHHHHHH
T ss_pred ----------------CCCCcEEEEEHHHHHHHHhh
Confidence 44445689999999998875
No 78
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.52 E-value=3.5e-13 Score=147.06 Aligned_cols=134 Identities=18% Similarity=0.333 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcc--cCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCC
Q psy9574 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWE--NYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRD 349 (783)
Q Consensus 272 l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~--~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 349 (783)
-...|++.+++.+..+||+||.||.|.+.+.|...|++. .+.+.||.++ +.++|||+.+|+++++++.. ..+.+
T Consensus 205 ~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id---eel~LRpsLtPsLlr~la~n-~k~~~ 280 (417)
T PRK09537 205 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPGLYNYLRKL-DRILP 280 (417)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC---CceEehhhhHHHHHHHHHhh-hhccc
Confidence 467888999999999999999999999999998887753 4557888763 47999999999999887644 23457
Q ss_pred CCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEE
Q psy9574 350 LPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIK 418 (783)
Q Consensus 350 LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~ 418 (783)
+|+|+|++|+|||+|.. ..+ +++||+|.++.+++... .+.++..++.++|+.||++ +.+.
T Consensus 281 ~P~RIFEIG~VFR~E~~--g~~--hlrEf~Ql~~~iiGs~~----~f~dL~~lleeLL~~LGI~-f~i~ 340 (417)
T PRK09537 281 DPIKIFEIGPCYRKESD--GKE--HLEEFTMVNFCQMGSGC----TRENLENIIDDFLKHLGID-YEII 340 (417)
T ss_pred CCeeEEEEeceEecCCC--CCC--CcceEEEEEEEEeCCch----HHHHHHHHHHHHHHHCCCC-cEEe
Confidence 89999999999999984 445 89999999999987542 2345678999999999986 4443
No 79
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.51 E-value=5e-14 Score=124.46 Aligned_cols=90 Identities=26% Similarity=0.366 Sum_probs=80.6
Q ss_pred CceEEEEecCc---chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecC
Q psy9574 538 PIQVMILNISK---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDR 614 (783)
Q Consensus 538 p~qv~Vi~~~~---~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~ 614 (783)
|+||+|+|++. +..++|.+++..||++|++|++|+++.++++++++|++.|+||+++||++|+++++|+||++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~---- 76 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR---- 76 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC----
Confidence 89999999987 67889999999999999999999998999999999999999999999999999999999994
Q ss_pred CCcccccccccceEEEecccCcccccCCHHHHHHHH
Q psy9574 615 PKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLA 650 (783)
Q Consensus 615 ~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~ 650 (783)
.+|++ ..++++++++.+
T Consensus 77 ------------------~~~~~-~~~~~~~~~~~l 93 (94)
T cd00861 77 ------------------KTGEK-EEISIDELLEFL 93 (94)
T ss_pred ------------------CCCcc-eEEeHHHHHHhh
Confidence 44444 578888876543
No 80
>PRK07080 hypothetical protein; Validated
Probab=99.50 E-value=1.2e-12 Score=136.14 Aligned_cols=248 Identities=16% Similarity=0.120 Sum_probs=165.7
Q ss_pred ccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--e-------
Q psy9574 251 NLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--S------- 321 (783)
Q Consensus 251 ~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~------- 321 (783)
||+ +.....|+|-..+.=..+.+.|...+...-...|++++..|.+.+.+.|+++|++..|-..|+.+. .
T Consensus 29 g~~-~~~g~~g~ygrs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~ 107 (317)
T PRK07080 29 GLL-IPTGVDGLYGRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHSFCGNEAEHR 107 (317)
T ss_pred Cce-eccCCCccccccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecCCCCCCHHHH
Confidence 543 555578887766554444455555444444444599999999999999999999999988888752 0
Q ss_pred ----------------CCceEEEcCCCcHHHHHHHhcc-cccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee
Q psy9574 322 ----------------ENRFYALKPMNCPGHIQIYNSN-FHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH 384 (783)
Q Consensus 322 ----------------~~~~~~LrP~~~~~~~~~~~~~-~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~ 384 (783)
....++|.|..|.+++.++.+. .... +- ..+--.|.|||+|.+ +++-|+.+|+|-|.-
T Consensus 108 ~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~-~g-~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V 182 (317)
T PRK07080 108 RLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPA-DG-RLVDVASYCFRHEPS---LDPARMQLFRMREYV 182 (317)
T ss_pred HHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCC-CC-cEEEeeeeeeccCCC---CCcHHHhheeeeEEE
Confidence 2347999999999999988754 3221 11 556668999999974 679999999999999
Q ss_pred EecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCccccc
Q psy9574 385 IFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPK 464 (783)
Q Consensus 385 ~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~ 464 (783)
.+|+++++.+.....++.+..+.+.|||+ +.++..+.| ++|...... +..+. ....|
T Consensus 183 ~iGt~e~v~~~r~~w~e~~~~l~~~LgL~-~~ve~AnDP--FF~~~gk~~-a~~Qr-------------------~~~lK 239 (317)
T PRK07080 183 RIGTPEQIVAFRQSWIERGTAMADALGLP-VEIDLANDP--FFGRGGKIV-AASQR-------------------EQNLK 239 (317)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHhCCc-eeEeecCCc--cccccchhh-hhhhh-------------------hccce
Confidence 99999988776678899999999999997 777776654 343321100 00000 01234
Q ss_pred EEEEee--cCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccc-cHHHHHHHHHHhcCC---CCCC
Q psy9574 465 IEYHLK--DSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG-SLERFIAILVENYSG---AMPL 534 (783)
Q Consensus 465 ~e~~~~--d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G-~ieRli~~LlE~~~~---~~P~ 534 (783)
+|+.++ +.-......+-+.---+++.+|+| .+.+|.. .|.++.| ++|||..+|+.+|+. .||.
T Consensus 240 fEl~vpi~~~~~~tA~~S~NyH~dhFg~~f~I--~~~~g~~-----ahTgCvGFGlER~a~All~~hG~d~~~WP~ 308 (317)
T PRK07080 240 FELLIPIYSDAPPTACMSFNYHMDHFGLTWGI--RTADGAV-----AHTGCVGFGLERLALALFRHHGLDPAAWPA 308 (317)
T ss_pred eEEEEecCCCCCceEEEEEehhhhccccccCc--ccCCCCE-----eEEeeeecCHHHHHHHHHHHhCCChhhccH
Confidence 565443 211112222222122235799998 4555542 3333333 399999999999873 6775
No 81
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.48 E-value=3.6e-13 Score=146.16 Aligned_cols=165 Identities=15% Similarity=0.227 Sum_probs=121.6
Q ss_pred cccHHHHhhhcccccccccCC--Cce---E-eccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCc--cc
Q psy9574 240 KRDHRKLGKQLNLFHFQEESP--GLI---F-WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHW--EN 311 (783)
Q Consensus 240 ~~~h~~l~~~l~l~~~~~~~~--G~~---~-~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~--~~ 311 (783)
+.|...++...+.=.|++.-+ +-. . +..-...-++.|++.+++.|..+||+||.||+|++.+.++..++. ..
T Consensus 203 ~~~~~~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~e 282 (453)
T TIGR02367 203 PEDEISLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTE 282 (453)
T ss_pred CchhhhhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCc
Confidence 345555666554323444322 111 1 223334457899999999999999999999999988888776654 23
Q ss_pred CCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchh
Q psy9574 312 YKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ 391 (783)
Q Consensus 312 ~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~ 391 (783)
+.++||.++ +.++|||+.+|+++++++...+ ...+|+|+|++|+|||+|. +..| |+|||+|.++.+++....
T Consensus 283 I~n~Iyk~e---e~lvLRPdLTPsLaR~La~N~~-~l~~PqKIFEIGkVFR~E~--~~~t--hlREF~QL~~eIaG~~at 354 (453)
T TIGR02367 283 LSKQIFRVD---KNFCLRPMLAPNLYNYLRKLDR-ALPDPIKIFEIGPCYRKES--DGKE--HLEEFTMLNFCQMGSGCT 354 (453)
T ss_pred ccccceEec---CceEecccCHHHHHHHHHHhhh-hccCCeeEEEEcCeEecCC--CCCC--CcCeEEEEEEEEECCCCC
Confidence 567898873 4699999999999998875422 2378999999999999998 5667 999999999999987654
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeeEEE
Q psy9574 392 IKNEIVVFNELVHKVYNEFGFKKIKI 417 (783)
Q Consensus 392 ~~~e~~e~~~~~~~i~~~lGl~~~~i 417 (783)
.. ++..++.++|+.||++ +.+
T Consensus 355 fa----DlealL~e~Lr~LGId-fei 375 (453)
T TIGR02367 355 RE----NLEAIIKDFLDHLEID-FEI 375 (453)
T ss_pred HH----HHHHHHHHHHHHCCCc-eEE
Confidence 32 3356889999999995 555
No 82
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=131.89 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=111.0
Q ss_pred CCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcC
Q psy9574 52 DHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKN 131 (783)
Q Consensus 52 ~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~ 131 (783)
..+..|+..--....-.-+=.||++|||++++.+.|+ +.....+..++--+.||+.+. +++++.++++..|++|++|
T Consensus 78 ~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~-~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~v~~~ 154 (241)
T COG2872 78 KVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG-ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANELVKEN 154 (241)
T ss_pred CCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc-ceeecceeccccccccccccc--chhhHHHHHHHHHHHHHcC
Confidence 4445555444344445566679999999999999994 666666666777778887543 9999999999999999999
Q ss_pred CCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCC-eEEEEEECCEE-EeccccccCCCCCcceEEEEeec
Q psy9574 132 ELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQ-EISLYSIGSFV-DLCRGPHVFSTGKLKIFKLIKLA 201 (783)
Q Consensus 132 ~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~-~v~iy~~~~~~-d~c~Gp~v~~Tg~i~~f~l~~~~ 201 (783)
+|+...++++|||.+++.. .+... +..+... .+|+++|+|+. ..|+||||.+||+||.+++.+..
T Consensus 155 ~~v~~~~i~~EE~~~~p~~----~~~~~-~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e 221 (241)
T COG2872 155 LPVIIYFIPREEAEKLPGL----VKLKN-KVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTE 221 (241)
T ss_pred CeeeeeecCHHHHhhCcCh----hhhcc-cCCccccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEE
Confidence 9999999999999996654 22222 2333332 89999999974 55999999999999999999974
No 83
>KOG0188|consensus
Probab=99.37 E-value=4.6e-12 Score=141.43 Aligned_cols=139 Identities=24% Similarity=0.379 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHh
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYF 148 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f 148 (783)
.+-.||++|||+.|+++++++..-..+..-.+.+++||....++|.+++.++|..||++|.++.|+...+++.++|.++
T Consensus 567 im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i- 645 (895)
T KOG0188|consen 567 IMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKI- 645 (895)
T ss_pred HhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcC-
Confidence 4457999999999999999665544333345889999998778999999999999999999999999999999999883
Q ss_pred hhcchHHHHHhhccCCCCCeEEEEEECCE----EEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccc
Q psy9574 149 DSVNEQFKKKIINLIPNNQEISLYSIGSF----VDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTA 221 (783)
Q Consensus 149 ~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~----~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~ 221 (783)
+.-...+....+ +.|||+.+|.. +++|+|||+.+||.|+.|-|.+..+- .+..+||.++.
T Consensus 646 -----~glr~v~~E~YP-dpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~i-------akgirRivavT 709 (895)
T KOG0188|consen 646 -----PGLRAVFDEVYP-DPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEGI-------AKGIRRIVAVT 709 (895)
T ss_pred -----CCcccccCCccC-CceEEEEeccccccceeecCCcccccccccceEEEechhhh-------hhceeEEEEec
Confidence 333444555444 38999999964 78999999999999999999986543 44577876643
No 84
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.37 E-value=3.5e-12 Score=111.78 Aligned_cols=73 Identities=44% Similarity=0.753 Sum_probs=70.6
Q ss_pred CceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEe
Q psy9574 538 PIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREI 610 (783)
Q Consensus 538 p~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~ 610 (783)
|++|+|++.+++..++|.+++..||+.|++|++|+++.++++++++|++.|+|++++||++|.++++++++++
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~ 73 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTR 73 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 7899999999889999999999999999999999999999999999999999999999999999999999995
No 85
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.28 E-value=2e-11 Score=107.57 Aligned_cols=73 Identities=37% Similarity=0.565 Sum_probs=69.9
Q ss_pred CceEEEEecCc---chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEe
Q psy9574 538 PIQVMILNISK---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREI 610 (783)
Q Consensus 538 p~qv~Vi~~~~---~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~ 610 (783)
|++|+|+|.++ ....+|..++..||+.|++|++|.++.++++++++|++.|+|+++++|++|+++++|+++++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 78999999988 88999999999999999999999988999999999999999999999999999999999994
No 86
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.16 E-value=9.7e-11 Score=134.00 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=112.7
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccch-------------------HHHhhh-CCcccC------
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL-------------------SLWKKT-GHWENY------ 312 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~-------------------~l~~~s-g~~~~~------ 312 (783)
.+| ++++|.....++.+.+.+++.|..+||++|.+|.+++. ++|..+ +.....
T Consensus 222 ~~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~ 300 (489)
T PRK04172 222 APP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVE 300 (489)
T ss_pred CCC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHH
Confidence 455 78999999999999999999999999999999999954 333221 110000
Q ss_pred --------------CCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCccccee
Q psy9574 313 --------------KDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRS 377 (783)
Q Consensus 313 --------------~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~Re 377 (783)
.--+|.+ +.+++.++|||..|+++++++..+ ...|+|+|++|+|||+|. +..+ |++|
T Consensus 301 ~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~----~~~p~rlFeiGrVFR~e~--~d~~--~l~E 372 (489)
T PRK04172 301 RVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR----PEPPQKYFSIGRVFRPDT--IDAT--HLPE 372 (489)
T ss_pred HHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhc----CCCCeEEEEecceEcCCC--CCcc--cCCc
Confidence 0114555 345678999999999999998863 267999999999999998 5666 7899
Q ss_pred EEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEE
Q psy9574 378 FIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIK 416 (783)
Q Consensus 378 F~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~ 416 (783)
|+|.++.+.+.+-. +.++..++..++..+|++.+.
T Consensus 373 f~ql~~~i~G~~~~----f~elkg~l~~ll~~lGi~~~~ 407 (489)
T PRK04172 373 FYQLEGIVMGEDVS----FRDLLGILKEFYKRLGFEEVK 407 (489)
T ss_pred hheEEEEEEeCCCC----HHHHHHHHHHHHHHhCCceEE
Confidence 99999999997422 367788999999999986333
No 87
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.06 E-value=3.8e-10 Score=90.37 Aligned_cols=60 Identities=37% Similarity=0.445 Sum_probs=57.0
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEee
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
|.|++|||+.+++++|+|+.|+|+.+++...+.+++|+|||++++|+++++++|.|++++
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 678899999999999999999999999999999999999999999999999999999986
No 88
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.99 E-value=9.5e-09 Score=114.76 Aligned_cols=138 Identities=17% Similarity=0.252 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh------hCCcccCCCCceEeee---------------------
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK------TGHWENYKDNMFTTKS--------------------- 321 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~------sg~~~~~~~~my~~~~--------------------- 321 (783)
...-...+.+.+++.|...||+++.+|...-.+.|.= -.|-..=..+.|.++.
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~H 306 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVH 306 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHh
Confidence 3444677888899999999999999885444555531 1221111123444421
Q ss_pred -----------------CCceEEEcCCCcHHHHHHHhcccccC---CC-CCceEEEecceeecCCCCCCCCcccceeEEE
Q psy9574 322 -----------------ENRFYALKPMNCPGHIQIYNSNFHSY---RD-LPLRFGEFGQCHRNESSGSLHGMMRTRSFIQ 380 (783)
Q Consensus 322 -----------------~~~~~~LrP~~~~~~~~~~~~~~~s~---~~-LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q 380 (783)
..+.++||+.+|++.++++......+ .. -|+|++++|+|||+|. +..+ +++||+|
T Consensus 307 e~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~--~Dat--H~~eFhQ 382 (494)
T PTZ00326 307 EVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNET--LDAT--HLAEFHQ 382 (494)
T ss_pred ccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCC--CCCC--cCceeEE
Confidence 12468999999999999988654321 12 3999999999999998 6777 9999999
Q ss_pred eceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 381 DDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 381 ~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
.|+.+++... + +.+++.++.++|+.+|+..
T Consensus 383 ~Eg~vi~~~~-s---~~~L~~~l~~f~~~lG~~~ 412 (494)
T PTZ00326 383 VEGFVIDRNL-T---LGDLIGTIREFFRRIGITK 412 (494)
T ss_pred EEEEEEeCCC-C---HHHHHHHHHHHHHhcCCCc
Confidence 9999998764 2 2556888999999999853
No 89
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=98.92 E-value=6e-09 Score=90.68 Aligned_cols=71 Identities=15% Similarity=0.353 Sum_probs=66.8
Q ss_pred eEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEe
Q psy9574 540 QVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREI 610 (783)
Q Consensus 540 qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~ 610 (783)
+|+|+|.+++...+|.+++..||++|++|+++..+.++++++++|...|+|+++++|+++..+++++++++
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~ 73 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDL 73 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEEC
Confidence 78999999888899999999999999999999877799999999999999999999999999999999993
No 90
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.84 E-value=1.5e-09 Score=80.96 Aligned_cols=43 Identities=47% Similarity=0.760 Sum_probs=32.4
Q ss_pred EEEEEECC-EEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhh
Q psy9574 169 ISLYSIGS-FVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIY 218 (783)
Q Consensus 169 v~iy~~~~-~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~ 218 (783)
||+|++|+ +.|+|+||||+|||+|+.|+|++.. +.+++++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~-------~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGE-------SKGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEE-------EEETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeE-------EEcCCcEEeC
Confidence 78999999 7899999999999999999999543 3456777764
No 91
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.6e-07 Score=105.61 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCC----------------CCChhhHHHHH-------HHHHHHHHhcC
Q psy9574 392 IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKR----------------IGENNIWDLAE-------NSLREAISSSG 448 (783)
Q Consensus 392 ~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~----------------~g~~~~~~~~~-------~~l~~~l~~~g 448 (783)
+++.+..++......|++|=|+.|.|.--.|++.. ......++.++ +...++..+.|
T Consensus 110 sEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~ 189 (500)
T COG0442 110 SEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLP 189 (500)
T ss_pred cHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445667888888899998877777765554311 11112233333 34445556677
Q ss_pred CceeecCCC----CCcccccEEEEeecCCCCeeeeccee-eecCccccc-CceeeecC-CcccccEEEeecccccHHHHH
Q psy9574 449 VTWEEFPGE----GAFYGPKIEYHLKDSIGRSWQCGTIQ-IDFSMPHRL-GAEYIAEN-NTRKTPVMLHRAIIGSLERFI 521 (783)
Q Consensus 449 ~~~~~~~g~----~~y~g~~~e~~~~d~~g~~~~~g~~~-lD~~~~~r~-d~~y~~~~-g~~~~p~~i~~~~~G~ieRli 521 (783)
+.+...+.. |+.+..-|++.++| |+..++++++ +.-|++.-| ++.|.+.+ +... ..|.+++|-.+|.+
T Consensus 190 l~~~~~~ad~g~~Gg~~S~eF~~l~pd--~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~---~v~t~s~~~s~r~~ 264 (500)
T COG0442 190 LIFGPVPADEGFIGGSYSHEFEALMPD--GGEDQIATSHHYGANFEKAFIDIKFEDEEEGELE---YVHTTSYGISTRII 264 (500)
T ss_pred ceEEeecccCCCCCCccceEEEEEccC--CCccEEEEecchHHhHHHhccCCCccccccccce---EecccceEEEeeee
Confidence 776654432 33333345554444 6777777765 555566667 77777766 3333 35567788788888
Q ss_pred HHHHHhcCC----CCCCCCCCceEEEEecCc--c-----hHHHHHHHHHHhHhCCCeEEEECC-CccHHHHHHHhhcCCC
Q psy9574 522 AILVENYSG----AMPLWLAPIQVMILNISK--E-----QIEYAKKVFNFLKSKKFRVEVDLR-NEKIAYKIRLHSLEKL 589 (783)
Q Consensus 522 ~~LlE~~~~----~~P~~lap~qv~Vi~~~~--~-----~~~~a~~i~~~Lr~~gi~v~~d~~-~~~l~~k~~~A~~~gi 589 (783)
++++-.++| .+|+.+||.||.++|..- + ...++..++..|...+++++.|++ +...|.|+..|+.+|+
T Consensus 265 ~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieV 344 (500)
T COG0442 265 GAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEV 344 (500)
T ss_pred eEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeecccc
Confidence 877766654 899999999999998752 1 578899999999999999999966 5899999999999999
Q ss_pred CEEEEEcccccccCceeEEE
Q psy9574 590 PYIIIVGNKELCENKITERE 609 (783)
Q Consensus 590 p~~iivG~~e~~~~~V~vr~ 609 (783)
|+++-+|.+..++.+++|-+
T Consensus 345 ghif~lG~kyse~~~a~v~~ 364 (500)
T COG0442 345 GHIFELGTKYSEAMNATVLD 364 (500)
T ss_pred CEEEEECchhhhhCeeEEEe
Confidence 99999999999999999999
No 92
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.57 E-value=4.7e-08 Score=73.20 Aligned_cols=38 Identities=45% Similarity=1.019 Sum_probs=35.0
Q ss_pred EEEEEECCE-EEeccccccCCCCCcceEEEEeecCcccc
Q psy9574 169 ISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAGSYWK 206 (783)
Q Consensus 169 v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~ 206 (783)
+++|.+|++ .+.|.||||+||++|+.|+|.+.++.+|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecC
Confidence 589999998 89999999999999999999999887775
No 93
>KOG2105|consensus
Probab=98.53 E-value=3e-07 Score=92.89 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=105.4
Q ss_pred eecccccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCC--eEEEcCcccCcEEEEEecCC-CCCHHHHHHHH
Q psy9574 45 VDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDS--QIAIGPVIENGFYYDFLYKR-SFTKEDLILIE 121 (783)
Q Consensus 45 ~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~--~~~~~~s~~~g~y~d~~~~~-~~t~e~l~~Ie 121 (783)
...+.+++-+.+|+.--.....---+-+||..||+.+.+..+|.-. .+.. .+|..-++... ++|.+++..|+
T Consensus 84 H~~~~~iePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWel-----G~~~sa~e~~~~~mTaeqvaaie 158 (415)
T KOG2105|consen 84 HHVNDYIEPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWEL-----GRFRSAIELDTPSMTAEQVAAIE 158 (415)
T ss_pred hccCCCCCCCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeec-----cceeeccccCCCCccHHHHHHHH
Confidence 3456788878887765433333335678999999999999999321 2222 35666666543 68999999999
Q ss_pred HHHHHHHhcCCCeEEEEcCHHHH-HHHhhhcchHHHHHhhccCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEe
Q psy9574 122 KKMIELSQKNELFLKKNITRDKA-IAYFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIK 199 (783)
Q Consensus 122 ~~m~~iI~~~~pi~~~~~~~eeA-~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~ 199 (783)
+.+|+.|..-+|+...+.+.++- .+-..-.|.+| .. .+.+|++.|+|. ...|+|+||.+|+.|+.++|+.
T Consensus 159 qsvNe~I~d~~~~~v~E~sl~d~eVeqVS~~~~~D-------~h-aG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILg 230 (415)
T KOG2105|consen 159 QSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPD-------DH-AGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILG 230 (415)
T ss_pred HHHHHHHHhccchheeecccCCcchhhccCCCCcc-------cc-cCceEEEeecCccCCccccccccchhhcceEEEee
Confidence 99999999999998888776431 11111122221 11 238999999997 4779999999999999999999
Q ss_pred ecCc
Q psy9574 200 LAGS 203 (783)
Q Consensus 200 ~~~g 203 (783)
...|
T Consensus 231 tekg 234 (415)
T KOG2105|consen 231 TEKG 234 (415)
T ss_pred cccc
Confidence 8777
No 94
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.53 E-value=2.4e-07 Score=73.98 Aligned_cols=61 Identities=44% Similarity=0.547 Sum_probs=55.9
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
++|++++|+.+.++.|+|+.++++.+.....+.++++++||+++||++++..+++|+|+++
T Consensus 1 ~~i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 1 IKITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIITF 61 (61)
T ss_pred CEEEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEeC
Confidence 3678889998999999999999999887777899999999999999999999999999985
No 95
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.49 E-value=1e-06 Score=93.06 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeee--CCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKS--ENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~--~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
+++..|.+.+++.|.++||.+|.||+|.... +|. .-+.|.+.. .|+.++|+-..+-..-++.....
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~----~~~----~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~---- 69 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT----GGA----GARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL---- 69 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC----Ccc----ccceEEeeecCCCCcEEeecCHHHHHHHHHhcCC----
Confidence 5788999999999999999999999998652 211 124577642 48899999433333333332221
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
-|+|++++|||+|. +..+ +++||+|.|++ .|..-++..+.+.+++
T Consensus 70 ---~~vf~i~~~fR~e~--~~~~--hl~EF~~le~e~~~~~~~dvm~~~e~lv 115 (269)
T cd00669 70 ---DRVFEINRNFRNED--LRAR--HQPEFTMMDLEMAFADYEDVIELTERLV 115 (269)
T ss_pred ---CcEEEEecceeCCC--CCCC--cccceeEEEEEEecCCHHHHHHHHHHHH
Confidence 18999999999994 5666 99999999999 5554345544444443
No 96
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.47 E-value=2e-07 Score=100.28 Aligned_cols=115 Identities=15% Similarity=0.117 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-e-eCCceEEEc--CCCcHHHHHHHhcccc
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-K-SENRFYALK--PMNCPGHIQIYNSNFH 345 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~-~~~~~~~Lr--P~~~~~~~~~~~~~~~ 345 (783)
.+++..|.+.+++.|.++||.||.||+|+..... ..+...+..+ |.+ + ..|+.++|+ |+.+ +.++++..
T Consensus 5 l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~--~~~~~~f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~-- 77 (306)
T PRK09350 5 LLKRAKIIAEIRRFFADRGVLEVETPILSQATVT--DIHLVPFETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC--CccCCceeee-eccccccCCcceEEecCHHHH--HHHHhhcc--
Confidence 4678999999999999999999999999875432 1122222222 332 2 457889999 6654 44444322
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc-hhHHHHHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIKNEIVVFN 400 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~e~~ 400 (783)
+ -|+|++|+|||+|.+ ..+ +..||+|.|++..+.+ ++..+...+++
T Consensus 78 ----~-~rvf~i~~~FR~e~~--~~~--H~~EFt~lE~y~~~~d~~dlm~~~E~li 124 (306)
T PRK09350 78 ----S-GPIFQICKSFRNEEA--GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLL 124 (306)
T ss_pred ----c-cceEEecceeecCCC--CCC--CCcHHHhhhhhhhCCCHHHHHHHHHHHH
Confidence 2 299999999999995 445 8999999999944443 44444443333
No 97
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.42 E-value=6.5e-06 Score=85.59 Aligned_cols=132 Identities=15% Similarity=0.300 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccc-hHHHhhh----CCcccCCCCceEe--eeC--CceEEEcCCCcHHHHHHH
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLD-LSLWKKT----GHWENYKDNMFTT--KSE--NRFYALKPMNCPGHIQIY 340 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~-~~l~~~s----g~~~~~~~~my~~--~~~--~~~~~LrP~~~~~~~~~~ 340 (783)
..-.+.+.+.+++.|...||+++.+|.++. ...|.+- .|...-..+.|.+ ..+ .+..+||+.+++...+.+
T Consensus 16 ~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l 95 (247)
T PF01409_consen 16 LHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL 95 (247)
T ss_dssp TSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH
Confidence 345678888999999999999999999965 4455542 2211112344555 233 678999999999988877
Q ss_pred hcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhc-CCe
Q psy9574 341 NSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEF-GFK 413 (783)
Q Consensus 341 ~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~l-Gl~ 413 (783)
.+.+..|+|++++|+|||+|....+ .+.+|+|.|+-+.+..-. +..+..++..+++.| |.+
T Consensus 96 ----~~~~~~p~kif~iG~VyR~D~~D~t----h~~~f~Qleg~~~~~~~~----f~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 96 ----NKHRPPPIKIFEIGKVYRRDEIDAT----HLPEFHQLEGLVVDKNVT----FEDLKGTLEELLKELFGID 157 (247)
T ss_dssp ----TTTSHSSEEEEEEEEEESSSCSBSS----BESEEEEEEEEEEETTE-----HHHHHHHHHHHHHHHHTTT
T ss_pred ----HHhcCCCeEEEecCceEecCCcccc----cCccceeEeeEEEecccc----hhHHHHHHHHHHHHHhhcc
Confidence 2344689999999999999985333 678999999987664322 244567778888888 886
No 98
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=6.8e-07 Score=99.00 Aligned_cols=117 Identities=24% Similarity=0.395 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe---eeCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT---KSENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~---~~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
-.+++.++...+|+.+...||.+|+||+|..+.- -|- ++ |-+ -..|+-|+|. -+ |.+ |++.+-
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP---EGA----RD--fLVPSRv~~G~FYALP-QS-PQl---fKQLLM 205 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP---EGA----RD--FLVPSRVHPGKFYALP-QS-PQL---FKQLLM 205 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC---ccc----cc--cccccccCCCceeecC-CC-HHH---HHHHHH
Confidence 4567889999999999999999999999865421 011 11 222 1234555553 22 222 222211
Q ss_pred -cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHHHHHHHHhh
Q psy9574 346 -SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNELVHKVYNE 409 (783)
Q Consensus 346 -s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~~~~~i~~~ 409 (783)
|- ==|+||+++|||+|- .+.- |.-||||.|++ +|++.++..+..++ ++..+|+.
T Consensus 206 vsG---fdRYyQIarCFRDED--lRaD--RQPEFTQiD~EmSF~~~edv~~~~E~---l~~~vf~~ 261 (585)
T COG0173 206 VAG---FDRYYQIARCFRDED--LRAD--RQPEFTQIDLEMSFVDEEDVMELIEK---LLRYVFKE 261 (585)
T ss_pred Hhc---ccceeeeeeeecccc--cccc--cCCcceeEeEEeecCCHHHHHHHHHH---HHHHHHHH
Confidence 11 127899999999998 5666 99999999999 99988776665543 44566664
No 99
>KOG1035|consensus
Probab=98.24 E-value=4.2e-05 Score=91.85 Aligned_cols=309 Identities=13% Similarity=0.100 Sum_probs=182.0
Q ss_pred eEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHh
Q psy9574 263 IFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYN 341 (783)
Q Consensus 263 ~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~ 341 (783)
..+.|.-..+++.+...+.++|+++|+.++.||.+... ..+ ..+..+.+.+ |.+|.-+.|..+...+++++..
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~---~~~---~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs 998 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLR---NAC---AYFSRKAVELLDHSGDVVELPYDLRLPFARYVS 998 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccc---ccc---chhccceeeeecCCCCEEEeeccccchHHHHhh
Confidence 46777778888888899999999999999999954332 111 1223455655 8999999999999999999888
Q ss_pred cccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe--eEEEEe
Q psy9574 342 SNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK--KIKIKL 419 (783)
Q Consensus 342 ~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~--~~~i~l 419 (783)
.+. .+-+|.|.+++|||.+.. .+. +|+++++++|++.....-+ +|++.++.+|... -|+ .+.+.+
T Consensus 999 ~N~----~~~~Kry~i~rVyr~~~~--~hP----~~~~ec~fDii~~t~sl~~--AE~L~vi~Ei~~~-~l~~~n~~i~l 1065 (1351)
T KOG1035|consen 999 RNS----VLSFKRYCISRVYRPAIH--NHP----KECLECDFDIIGPTTSLTE--AELLKVIVEITTE-ILHEGNCDIHL 1065 (1351)
T ss_pred hch----HHHHHHhhhheeeccccc--CCC----ccccceeeeEecCCCCccH--HHHHHHHHHHHHH-HhccCceeEEe
Confidence 653 345889999999999873 244 8999999999997643222 4446666666554 122 367888
Q ss_pred ecCCC-----CCCCCh-------------------------hhHH-----------------------------------
Q psy9574 420 ALRPN-----KRIGEN-------------------------NIWD----------------------------------- 434 (783)
Q Consensus 420 ~~~~~-----~~~g~~-------------------------~~~~----------------------------------- 434 (783)
|+.+. .+.|.+ ..|.
T Consensus 1066 nH~~LL~Ai~~~~~i~~~~r~~v~~~l~~~~~~r~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 1145 (1351)
T KOG1035|consen 1066 NHADLLEAILSHCGIPKDQRRKVAELLSDMGSSRPQRSEKELKWVFIRRSSLQLAKLPEFVLNRLFLVAGRFQALKLIRG 1145 (1351)
T ss_pred ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccHHHHHHHHhhhhHHHHHhhhhHHHHHhhhhhhhcchhhhHHHhh
Confidence 85431 001100 0011
Q ss_pred --------HHH---HHHHHHHHhcCCceee--cCCC--CCcccccEEEEeec-----CCCCee-eecceeeecCcccccC
Q psy9574 435 --------LAE---NSLREAISSSGVTWEE--FPGE--GAFYGPKIEYHLKD-----SIGRSW-QCGTIQIDFSMPHRLG 493 (783)
Q Consensus 435 --------~~~---~~l~~~l~~~g~~~~~--~~g~--~~y~g~~~e~~~~d-----~~g~~~-~~g~~~lD~~~~~r~d 493 (783)
.+. +.+...|...|+++.. +.|. ..+.+--+-+++.- ..|+.. ..+ .+|||
T Consensus 1146 ~~~~~~~vr~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~~~~~~la~--------GgRyd 1217 (1351)
T KOG1035|consen 1146 KLRADSLVRALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTSGDPVLLAA--------GGRYD 1217 (1351)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCcCCceeeec--------ccchH
Confidence 000 1112223334444322 2221 00111111122211 111111 112 38888
Q ss_pred ceeeecCCcccccEEEeecccccH--HHHHHHHHHhcCC-CCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEE
Q psy9574 494 AEYIAENNTRKTPVMLHRAIIGSL--ERFIAILVENYSG-AMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEV 570 (783)
Q Consensus 494 ~~y~~~~g~~~~p~~i~~~~~G~i--eRli~~LlE~~~~-~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~ 570 (783)
......-+....-+. ++.|.. +-....+ ..+ ..|...+..+|.|+..+......+.+|++.|++.||++++
T Consensus 1218 ~~~~~~~~~~~~~~p---~a~gv~~~~~~~~~~---~~~~~~~~~~~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i 1291 (1351)
T KOG1035|consen 1218 SLLQEVRDEQKMNLP---GAIGVSALSTIRQHA---PKDLEPIKTPSSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEI 1291 (1351)
T ss_pred HHHHHhhhhhhhcCc---ccceehhhHHHHHhh---hccccCCCCcccccEEEEecCCchHHHHHHHHHHHHHcCcccce
Confidence 532211111111011 222211 1111111 112 3333345689999999988889999999999999999998
Q ss_pred ECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 571 DLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 571 d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
-.. ..+....-.+|+.--|-+++++- ++.+.|+.
T Consensus 1292 ~~~~s~~~~e~~e~~~~~~i~~iliv~-----n~~~~vks 1326 (1351)
T KOG1035|consen 1292 VPDPSPSLEELTEYANEHEITCILIVT-----NQKEKVKS 1326 (1351)
T ss_pred eeCCCcchHHHHHHHhcCceEEEEEEe-----cceeeech
Confidence 654 56778888888887777777774 56666665
No 100
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.21 E-value=3e-06 Score=67.14 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=54.4
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEee
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
|++.+++|..+.++.|+|+.++++.+.....+.++++.+||++++|++++.+++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 1 MIIFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 467778899999999999999999988776778999999999999999999999999985
No 101
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.20 E-value=0.0001 Score=79.09 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=91.3
Q ss_pred eccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchH-HHhhh----CCcccCCCCceEeeeCCceEEEcCCCcHHHHHH
Q psy9574 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLS-LWKKT----GHWENYKDNMFTTKSENRFYALKPMNCPGHIQI 339 (783)
Q Consensus 265 ~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~s----g~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~ 339 (783)
+.+-...-.+.+.+.+++.|...||+++.+|.+++.. .|..- .|-..=..+.|.+ .+..+||..++|...+.
T Consensus 102 ~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp~qir~ 178 (339)
T PRK00488 102 IELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSPVQIRT 178 (339)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcHHHHHH
Confidence 3334445578889999999999999999999998644 34332 2211111234545 35689999999998887
Q ss_pred HhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhc
Q psy9574 340 YNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEF 410 (783)
Q Consensus 340 ~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~l 410 (783)
... ...|+|+++.|+|||++....+ +..+|+|.++-+.+..-. +.++...+..+++.+
T Consensus 179 L~~-----~~~Pirif~~G~VyR~D~~Dat----H~~~FhQleglvvd~~vt----f~dLK~~L~~fl~~~ 236 (339)
T PRK00488 179 MEK-----QKPPIRIIAPGRVYRNDSDDAT----HSPMFHQVEGLVVDKNIS----FADLKGTLEDFLKAF 236 (339)
T ss_pred HHh-----cCCCeEEEEeeeEEEcCCCCcc----cCcceeeEEEEEEeCCCC----HHHHHHHHHHHHHHH
Confidence 765 3689999999999999973344 678999999887775422 234455566666666
No 102
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=0.00017 Score=77.11 Aligned_cols=139 Identities=15% Similarity=0.234 Sum_probs=95.2
Q ss_pred CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh---CCcccCC---CCceEeeeCCceEEEcCCC
Q psy9574 259 SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT---GHWENYK---DNMFTTKSENRFYALKPMN 332 (783)
Q Consensus 259 ~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s---g~~~~~~---~~my~~~~~~~~~~LrP~~ 332 (783)
.+|. ...|-+......+.+.+++.|...||+++..|.++ .+.|.-. -..++-+ .+.|.++.+.+.+.||--+
T Consensus 100 lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE-~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHT 177 (335)
T COG0016 100 LPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIE-TDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHT 177 (335)
T ss_pred CCCc-cCCCCCcChHHHHHHHHHHHHHHcCceeccCCccc-ccccchhhhcCCCCCCcccccceEEEcCCCCceeecccC
Confidence 5555 45556667788899999999999999999999655 3344210 0111222 2345554433357888766
Q ss_pred cHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcC
Q psy9574 333 CPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFG 411 (783)
Q Consensus 333 ~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lG 411 (783)
++.-++....... -|+|++..|+|||+|...+. -..+|+|.|.-+.+..-. +..+..+..++++.++
T Consensus 178 s~vq~R~l~~~~~----~P~k~~~~grvyR~D~~DaT----Hs~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAENAK----IPIKIFSPGRVYRNDTVDAT----HSPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhCCC----CCceEecccceecCCCCCcc----cchheeeeEEEEEeCCcc----HHHHHHHHHHHHHHhc
Confidence 6666777765532 29999999999999976565 459999999966654422 3445777888888886
No 103
>PF14877 mIF3: Mitochondrial translation initiation factor
Probab=98.12 E-value=1.3e-05 Score=77.51 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=83.2
Q ss_pred cceEEEecccCcccccCCHHHHHHHH--HHhhhhhhhcCCCC---CCCceEecc-------hhHHHHHHHHHhH-----H
Q psy9574 625 APELRLSGIKNEPLGIVTLEKAFYLA--EKENVDLVEIAPFA---KPPVARLMD-------YGKFKYREKKKAH-----E 687 (783)
Q Consensus 625 ~~~v~li~~~g~~~~~~~~~~a~~~~--~~~~~dlv~v~~~~---~ppvcki~~-------~~~~~~~~~k~~~-----~ 687 (783)
...|.+|+...+.+..+++.+++.-+ ...|+.+|-+.... +-|+.|+++ |+.++.+++.++- .
T Consensus 32 ~g~Vk~inp~t~~Le~~~l~~~~~~lDL~~~Gl~iV~~~~~~~~~~lPLVK~v~~~~alk~YSd~LAk~Ke~ELl~~G~~ 111 (181)
T PF14877_consen 32 NGKVKFINPETNKLEESNLRDIAKGLDLSKHGLQIVNSEKDQKGRDLPLVKIVEVREALKQYSDELAKQKEKELLEMGKA 111 (181)
T ss_pred CCeEEEEcCCCCcceeeeHHHHHHhCCccccceEEecccccCCCCcCceEEEecHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 35667777888878999999999986 45566666555544 569999995 5555544433322 0
Q ss_pred hh---h----cccccceeEEEEecCCCcchHH-HHHHHHHHHHhcCCeEEEEEEecCCc
Q psy9574 688 VK---M----KQKVILIKEVKFRPCINEGDYN-IKLRNLIRFLEEGDKVKITLRFRGRE 738 (783)
Q Consensus 688 ~~---k----k~~~~~~Kei~~~~~i~~hDl~-~k~~~~~~fL~~g~~V~~~~~~~gr~ 738 (783)
.+ + .++...+|.|+++|.|+++||. -|..-+..-|.+|++|-|.|--+++.
T Consensus 112 ~k~~~~k~~~ekkks~~K~i~isW~Is~~DL~~QK~~EI~~~LkKG~kv~iyi~dK~~~ 170 (181)
T PF14877_consen 112 LKKLDKKLKAEKKKSSTKQIKISWQISPDDLKNQKANEIEKRLKKGEKVNIYIDDKDNS 170 (181)
T ss_pred HHHhhhhchhhhcccccceEEEEEeechHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 11 1 2345788999999999999996 58888999999999999988766544
No 104
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.09 E-value=3.5e-05 Score=84.53 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee-----eCCceEEEcCCCcHHHHHHHhcc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK-----SENRFYALKPMNCPGHIQIYNSN 343 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~-----~~~~~~~LrP~~~~~~~~~~~~~ 343 (783)
-.+++..|.+.+++.|.+.||.||.||.|..... .| ..+.|.++ .-++.++|+...+...-.+.+..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~---~~-----~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC---EG-----GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS---SS-----SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc---Cc-----cccccccccchhhhcccceecCcChHHHHhhhcccc
Confidence 3578899999999999999999999999876632 11 35577776 45688999987777665555443
Q ss_pred cccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEeceeE-ecCchhHHHHHHHHHHHHHH
Q psy9574 344 FHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGHI-FCTKSQIKNEIVVFNELVHK 405 (783)
Q Consensus 344 ~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~e~~~~~~~ 405 (783)
. =|+|++|+|||+|.+ +++ -.-||+|.|++. |...++..+.+.+++..+..
T Consensus 93 ~-------~~vf~i~~~FR~E~~~~~r----Hl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~ 145 (335)
T PF00152_consen 93 L-------ERVFEIGPCFRNEESRTRR----HLPEFTMLEWEMAFADYDDLMDLIEELIKYIFK 145 (335)
T ss_dssp H-------SEEEEEEEEE-BSSSCBTT----BSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHH
T ss_pred c-------hhhhheecceeccCccccc----chhhhhhhhhccccCcHHHhHHHHHHHHHHHHH
Confidence 2 379999999999986 333 346999999995 55555555555555554444
No 105
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.00 E-value=2.9e-05 Score=84.33 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|.+.+++.|.++||.+|.||+|+.... .|+ -+.|.++--++.++|+...+-..-.+... .
T Consensus 23 ~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~---e~~-----~~~f~~~~~~~~~yL~~Spql~lk~l~~~-~---- 89 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT---EGG-----AELFKVSYFGKPAYLAQSPQLYKEMLIAA-L---- 89 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC---Ccc-----CCccccccCCCcceecCCHHHHHHHHHHh-h----
Confidence 3577899999999999999999999999987321 122 23344444467788875544433333222 1
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecC-c-hhHHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT-K-SQIKNEIVVFNE 401 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~-~-~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.+. .+ --..||+|.|+|.... + ++..+...+++.
T Consensus 90 ---~~vf~i~~~FR~E~~~--~~-rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~ 138 (322)
T cd00776 90 ---ERVYEIGPVFRAEKSN--TR-RHLSEFWMLEAEMAFIEDYNEVMDLIEELIK 138 (322)
T ss_pred ---hhhEEeccccccCCCC--cC-CCcceeeccceeeeccCCHHHHHHHHHHHHH
Confidence 3789999999999842 11 2578999999995544 3 555555544443
No 106
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.96 E-value=3.9e-05 Score=81.58 Aligned_cols=110 Identities=24% Similarity=0.316 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---eCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---SENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
+++..|.+.+|+.|.+.||.||.||.|..... .|. ++ |.+. ..+..++|+-..+-..-++.+.
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~---~g~----~~--f~~~~~~~~~~~~~L~~Spql~lk~ll~~----- 67 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP---EGA----RD--FLVPSRLHPGKFYALPQSPQLFKQLLMVS----- 67 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC---CCC----CC--ceeccccCCCceeecccCHHHHHHHHHhc-----
Confidence 57889999999999999999999999975432 111 11 2221 1234455663222111111111
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
.+ =|+|++|+|||+|.+ ..+ |..||+|.|++ .|..-++..+.+.+++
T Consensus 68 -g~-~~v~~i~~~fR~e~~--~~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li 115 (280)
T cd00777 68 -GF-DRYFQIARCFRDEDL--RAD--RQPEFTQIDIEMSFVDQEDIMSLIEGLL 115 (280)
T ss_pred -Cc-CcEEEeccceeCCCC--CCC--ccceeEEeEeeeccCCHHHHHHHHHHHH
Confidence 12 379999999999994 566 88899999999 4454355555554444
No 107
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.95 E-value=2.4e-05 Score=62.55 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=53.2
Q ss_pred EEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEee
Q psy9574 3 SIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 3 ~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
-+.+|+|+.++++.|+|+.++++.++....+.++++.+||+++|+++++.++++|++++
T Consensus 2 ~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 35678999999999999999999888777778899999999999999999999999875
No 108
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.94 E-value=0.00021 Score=73.39 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccchH-HHhhhCCcccC-C---CCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLS-LWKKTGHWENY-K---DNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~sg~~~~~-~---~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+..-+..+.- . ...+.+...- .-+|||+..|++....+.+
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~-~~~LR~sLlp~LL~~l~~N---- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA-RLLLRTHTSAVQARALAKL---- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc-eEEEeccCcHHHHHHHHhc----
Confidence 35677888999999999999999998873 44433221110 0 0223332222 5799999999999887766
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcC
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFG 411 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lG 411 (783)
..|+|+|++|+|||.+.. ..+ ++.||++.++.+.+.+- .+.++...+..++..+|
T Consensus 78 -~~~~~lFEiG~Vf~~~~~--~~~--~~~E~~~l~~~~~g~~~----df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 -KPPIRIFSIGRVYRNDEI--DAT--HLPEFHQIEGLVVDKGL----TFADLKGTLEEFAKELF 132 (218)
T ss_pred -CCCeeEEEEcCeEECCCC--CCC--cCCccEEEEEEEECCCC----CHHHHHHHHHHHHHHhc
Confidence 569999999999999763 222 34599999988888531 24566778888888888
No 109
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.88 E-value=0.00035 Score=78.31 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCCeEee-cCcccchHHHh--h----hCCcccCCCCceEeee------------------------
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIK-TPQMLDLSLWK--K----TGHWENYKDNMFTTKS------------------------ 321 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~-tP~l~~~~l~~--~----sg~~~~~~~~my~~~~------------------------ 321 (783)
...+.+.+++.|...||+++. .|.++ .+.|. . -.|-..=..+.|.++.
T Consensus 223 l~~~~~ei~~if~~mGF~e~~~g~~ve-s~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~ 301 (492)
T PLN02853 223 LLKVRQQFRKIFLQMGFEEMPTNNFVE-SSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGY 301 (492)
T ss_pred HHHHHHHHHHHHHhCCCEEecCCCCee-chhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhcCCC
Confidence 566778888899999999995 45544 33442 1 1221111123444431
Q ss_pred ------------CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc
Q psy9574 322 ------------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK 389 (783)
Q Consensus 322 ------------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~ 389 (783)
..+.++||.-+|+..++++...... ..-|+|++.+|+|||+|.-.+. .+.+|+|.|.-+.+..
T Consensus 302 gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~-~~~p~k~fsigrVfR~d~iDat----H~~eFhQ~EG~vvd~~ 376 (492)
T PLN02853 302 GSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQK-GFKPKRYFSIDRVFRNEAVDRT----HLAEFHQVEGLVCDRG 376 (492)
T ss_pred CccccccccccchhcccccCCCCCHHHHHHHHHhhcc-CCCCcEEEeccceecCCCCCcc----cCccceeEEEEEEeCC
Confidence 0156899987777777777643221 2369999999999999985454 5689999999988643
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 390 SQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 390 ~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
-. +..++.+..++|+.+|+.
T Consensus 377 ~t----~~~L~g~l~~f~~~lg~~ 396 (492)
T PLN02853 377 LT----LGDLIGVLEDFFSRLGMT 396 (492)
T ss_pred CC----HHHHHHHHHHHHHHcCCc
Confidence 22 234578888899999874
No 110
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.87 E-value=0.0001 Score=80.29 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.+++..+...+++.|.+.||.||.||.|.... +|. .-+.|.+ ...++..+|+-..+..+-.+.+..
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~----~~~----~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g---- 75 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA----GGA----AARPFITHHNALDMDLYLRIAPELYLKRLIVGG---- 75 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC----CCc----cceeEEeccCCCCcceeeccCHHHHHHHHHhcC----
Confidence 46788999999999999999999999997553 221 1123433 223566778744333332222211
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
+ =|+|++|+|||+|.++.+ ..-||+|.|++ .|..-++..+.+.+++.
T Consensus 76 --~-~~vf~i~~~FR~E~~~~r----Hl~EFt~le~e~~~~~~~~~m~~~e~li~ 123 (329)
T cd00775 76 --F-ERVYEIGRNFRNEGIDLT----HNPEFTMIEFYEAYADYNDMMDLTEDLFS 123 (329)
T ss_pred --C-CcEEEEeccccCCCCCCC----CCCceEEEEEeeecCCHHHHHHHHHHHHH
Confidence 1 479999999999997543 67899999999 44433555555544443
No 111
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.85 E-value=0.00029 Score=75.55 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccch-HHHhhhCCc-ccCC-C--CceEeeeCCceEEEcCCCcHHHHHHHhcc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL-SLWKKTGHW-ENYK-D--NMFTTKSENRFYALKPMNCPGHIQIYNSN 343 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~-~l~~~sg~~-~~~~-~--~my~~~~~~~~~~LrP~~~~~~~~~~~~~ 343 (783)
+..-.+.+.+.+++.+...||+|+.+|.|++. ..+..-+.. ++.. + +.|.++ +.-+||+...|+..+..+.+
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N 146 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEEN 146 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhc
Confidence 44456788888999999999999999999887 344432211 1111 1 334453 56789999999999988866
Q ss_pred cccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 344 FHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 344 ~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
.. .|+|+|++|+|||.+..... +..||+|.++-+.+.. . .+.++...+..++..+|++
T Consensus 147 ~~----~pirlFEiGrVfr~d~~d~~----~~pef~ql~gl~~~~~--~--~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 147 EK----PPIRIFSPGRVFRNDTVDAT----HLPEFHQVEGLVIDKN--V--SFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred CC----CCceEEEecceEEcCCCCCc----cCChhhEEEEEEECCC--C--CHHHHHHHHHHHHHHhCCC
Confidence 43 79999999999999863222 3559999988866522 1 1456677788888888875
No 112
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.84 E-value=3e-05 Score=83.48 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeee-----CCceEEEcCCCcHHHHHHHhcccc
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKS-----ENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~-----~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
+++..|.+.+++.+.++||.+|.||.|+....-. ++ -+.|.++- .+...+|+-..+-..-++++..
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e--~~-----~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g-- 72 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVTD--PH-----LDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG-- 72 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCC--cC-----CcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc--
Confidence 5789999999999999999999999998763210 12 23344421 2456777755444443333322
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
+ =|+|++|+|||+|.++++ ..-||+|.|++ .+..-++..+.+.+++
T Consensus 73 ----~-~rVfeigp~FRaE~~~~r----Hl~EFtmLE~e~~~~d~~d~m~~~e~li 119 (304)
T TIGR00462 73 ----S-GPIFQICKVFRNGERGRR----HNPEFTMLEWYRPGFDYHDLMDEVEALL 119 (304)
T ss_pred ----C-CCEEEEcCceeCCCCCCC----cccHHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 2 379999999999997544 56899999999 4433344444443333
No 113
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=2.9e-05 Score=79.38 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=86.6
Q ss_pred ceEeccC----hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHH
Q psy9574 262 LIFWHPK----GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGH 336 (783)
Q Consensus 262 ~~~~lP~----g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~ 336 (783)
...|.|. ....+++|.+-+|..|...||.||+||.|...-+-. -|+..|..+.+.- ..++..++|.+.-+-+.
T Consensus 4 ~~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd--~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~m 81 (322)
T COG2269 4 TPWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTD--IHLHPFETEFLGPGGAKGKPLWLHTSPEYHM 81 (322)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCc--cceeeeeeEEeccCccccceeeeecCcHHHH
Confidence 3455554 245678999999999999999999999986543321 2333333333222 23367899998888877
Q ss_pred HHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc-hhHHHHHHHHHHH
Q psy9574 337 IQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIKNEIVVFNEL 402 (783)
Q Consensus 337 ~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~e~~~~ 402 (783)
-++.+.... .+||+|+||||+..|+++- -||||.|.|-.+.+ ....++...+++.
T Consensus 82 KrLLAag~~-------~ifql~kvfRN~E~G~~H~----PEFTMLEWYrv~~d~~~lm~e~~~Ll~~ 137 (322)
T COG2269 82 KRLLAAGSG-------PIFQLGKVFRNEEMGRLHN----PEFTMLEWYRVGCDYYRLMNEVDDLLQL 137 (322)
T ss_pred HHHHHccCC-------cchhhhHHHhcccccccCC----CceeEeeeeccCCcHHHHHHHHHHHHHH
Confidence 777665432 4799999999998776654 79999999955544 4444544444443
No 114
>KOG2411|consensus
Probab=97.84 E-value=5.7e-06 Score=89.80 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCceEe-e--eCCceEEEcCCCcHHHHHHH-hcc
Q psy9574 269 GYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-K--SENRFYALKPMNCPGHIQIY-NSN 343 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~--~~~~~~~LrP~~~~~~~~~~-~~~ 343 (783)
-.+++.++...+++.+. +.||.+|.||+|.... -|.. .+ |.+ . ..|.-|+| |-+-...-.+. ...
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrT----PgGA----~E-FvVPtr~~~g~FYaL-pQSPQQfKQlLMvsG 246 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRT----PGGA----RE-FVVPTRTPRGKFYAL-PQSPQQFKQLLMVSG 246 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhccC----CCcc----ce-eecccCCCCCceeec-CCCHHHHHHHHHHhc
Confidence 45778888888888884 7799999999974431 1211 11 222 1 11233333 32322222221 122
Q ss_pred cccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 344 FHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 344 ~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
+ =|+||+++|||+|.. +.- |.-||+|.|++ .|...+...+-++.++
T Consensus 247 i-------drYyQiARCfRDEdl--R~D--RQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 247 I-------DRYYQIARCFRDEDL--RAD--RQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred h-------hhHHhHHhhhccccc--Ccc--cCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 2 268999999999985 444 99999999999 7777655555443333
No 115
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.82 E-value=0.00013 Score=82.27 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.-.+++..|.+.+++.|.+.||.||.||.|..... -|. -+.|.++.-+..++|+-..+...-.+.+..
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~-----~~~f~v~~~~~~~yL~~Spql~~q~li~~g---- 198 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT---EGG-----TELFPITYFEREAFLGQSPQLYKQQLMAAG---- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC---CCC-----cceeeeEecCCcEEECcCHHHHHHHHHhcc----
Confidence 34788899999999999999999999999864311 122 234555444567788754333322222221
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
+ =|+|++|+|||+|.++..+ -.-||+|.|+| .|...++..+...+++
T Consensus 199 --~-~rVf~i~~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 199 --F-ERVYEIGPIFRAEEHNTHR---HLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred --c-CcEEEEecccccCCCCCcc---chheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 2 3799999999999864211 23699999999 5555555555544444
No 116
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.81 E-value=7.7e-05 Score=81.43 Aligned_cols=121 Identities=14% Similarity=0.007 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHH-HhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSL-WKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
-.+++..|.+.+++.|.+.||.||.||+|....- ....|. + -.-..+.++--+..++|+...+-. -+++...
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g---- 101 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGS-D-LPVKQISIDFYGVEYYLADSMILH-KQLALRM---- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccc-c-CCccccccccCCCceeeccCHHHH-HHHHHhh----
Confidence 4678899999999999999999999999986510 000111 0 001123333346778888754443 3333322
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
+ =|+|++|+|||+|.+++- +--..-||+|.|+| .|..-++..+...+++
T Consensus 102 --~-~rVfeI~p~FR~E~~~~~-~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 102 --L-GKIFYLSPNFRLEPVDKD-TGRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred --c-CcEEEEeccccCCCCCCC-CCCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 1 379999999999997540 01157899999999 4444355555444444
No 117
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.79 E-value=0.00015 Score=82.99 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|...+++.|...||.||.||+|.+.. +|. .-..|.+ +.-+..++|+-..+...-++....
T Consensus 171 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----~Ga----~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g--- 239 (491)
T PRK00484 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA----GGA----AARPFITHHNALDIDLYLRIAPELYLKRLIVGG--- 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCceeccC----CCc----cceeeeeccccCCCceEeccCHHHHHHHHHhcc---
Confidence 467889999999999999999999999997441 231 1123332 223566778744333332322222
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
+ =|+|++|+|||+|.++++ +.-||+|.|+| .|+.-++..+...+++.
T Consensus 240 ---~-~rVfei~~~FR~E~~~~r----H~pEFt~lE~e~a~~d~~d~m~~~E~li~ 287 (491)
T PRK00484 240 ---F-ERVYEIGRNFRNEGIDTR----HNPEFTMLEFYQAYADYNDMMDLTEELIR 287 (491)
T ss_pred ---C-CcEEEEecceecCCCCCC----cCCceEEEEEEEecCCHHHHHHHHHHHHH
Confidence 1 379999999999997543 78999999999 66544555555544443
No 118
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.78 E-value=0.00015 Score=82.06 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.-.+++..|...+++.|.+.||.||.||.|..... .|. -+.|.++.-+..++|+-..+-..-.+....
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~---eg~-----~~~f~~~~~~~~~~L~~Spql~~q~l~~~g---- 201 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT---EGG-----AELFPIDYFEKEAYLAQSPQLYKQMMVGAG---- 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC---CCC-----cceEeEEecCCceEecCCHHHHHHHHHhcC----
Confidence 34678899999999999999999999999953211 122 234666555678888765444332222221
Q ss_pred CCCCceEEEecceeecCCCCCCCCccc-ceeEEEecee-EecC-chhHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMR-TRSFIQDDGH-IFCT-KSQIKNEIVVFN 400 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R-~ReF~q~d~~-~f~~-~~~~~~e~~e~~ 400 (783)
+ =|+|++|+|||+|.++.. | .-||+|.|+| .|.. -++..+...+++
T Consensus 202 --~-~rVf~i~~~FR~E~~~t~----rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv 250 (437)
T PRK05159 202 --F-ERVFEIGPVFRAEEHNTS----RHLNEYTSIDVEMGFIDDHEDVMDLLENLL 250 (437)
T ss_pred --C-CcEEEEeceeeCCCCCCc----ccchhhheeeeeeeecccHHHHHHHHHHHH
Confidence 2 379999999999996421 3 4699999999 5665 455555554444
No 119
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.78 E-value=0.00015 Score=83.88 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---eCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---SENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
-.+++..|...+|+.|.+.||.||.||+|....- .|- ++ |.+. .++.-|+|+-..+...-.+....
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---eGa----r~--f~vp~~~~~~~~y~L~qSpQlykq~l~v~G-- 205 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---EGA----RD--YLVPSRVHKGEFYALPQSPQLFKQLLMVSG-- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---CCC----cc--eeeeeecCCCceeecCCCHHHHHHHHHhcc--
Confidence 4578899999999999999999999999975321 121 11 2221 13444556522221111112121
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
+ =|+||+|+|||+|.+ ... |--||+|.|+| .|...++..+.+++++.
T Consensus 206 ----~-ervfqI~~~FR~E~~--~t~--r~pEFT~le~E~af~d~~dvm~~~E~li~ 253 (583)
T TIGR00459 206 ----V-DRYYQIARCFRDEDL--RAD--RQPEFTQIDMEMSFMTQEDVMELIEKLVS 253 (583)
T ss_pred ----c-CcEEEEcceeeCCCC--CCC--CCcccCcceeeecCCCHHHHHHHHHHHHH
Confidence 2 379999999999995 344 88999999999 66654555555544443
No 120
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.74 E-value=0.00017 Score=84.09 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---eCCceEEEcCCCcHHHHH-HHhccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---SENRFYALKPMNCPGHIQ-IYNSNF 344 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~~~LrP~~~~~~~~-~~~~~~ 344 (783)
-.+++..|...+|+.|.+.||.||.||+|....- .|. ++ |.+. ..+..++|+- +....-. +....
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~---ega----~~--f~v~~~~~~~~~~~L~q-Spql~kq~l~~~g- 208 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP---EGA----RD--YLVPSRVHPGKFYALPQ-SPQLFKQLLMVAG- 208 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC---CCC----cc--ceecccccCCceeecCC-CHHHHHHHHHhcc-
Confidence 4578899999999999999999999999986421 121 11 3321 2345566652 2222211 12111
Q ss_pred ccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 345 HSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 345 ~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
+ =|+||+|+|||+|.+ +.. |--||+|.|+| .|...++..+.+++++
T Consensus 209 -----~-~rvfqi~~~FR~E~~--~~~--r~~EFt~le~e~af~~~~dvm~~~E~li 255 (588)
T PRK00476 209 -----F-DRYYQIARCFRDEDL--RAD--RQPEFTQIDIEMSFVTQEDVMALMEGLI 255 (588)
T ss_pred -----c-CceEEEeceeecCCC--CCC--cCcccccceeeecCCCHHHHHHHHHHHH
Confidence 2 379999999999984 444 77799999999 6665455555554444
No 121
>PLN02903 aminoacyl-tRNA ligase
Probab=97.73 E-value=0.00018 Score=83.68 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHHH-cCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 269 GYIILQEIKKYMRKIYKY-NGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~-~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
-.+++..|...+|+.|.. .||.||.||+|..... .|- .+.+... ..+..|+|+-. .+. |++.+.
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---eGa-----rdf~v~~~~~~g~~y~L~qS-PQl----ykQ~Lm 268 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---EGA-----RDYLVPSRVQPGTFYALPQS-PQL----FKQMLM 268 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---CCC-----cccEEeeecCCCcccccCCC-HHH----HHHHHH
Confidence 467889999999999996 9999999999975422 111 1222221 13445566532 222 222111
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
.. .+ =|+||+|+|||+|.++. . |.-||+|.|+| .|...++..+.+++++
T Consensus 269 ~~-G~-~RvFqIa~~FR~E~~~t--~--RhpEFTqLE~E~sf~d~~dvm~~~E~li 318 (652)
T PLN02903 269 VS-GF-DRYYQIARCFRDEDLRA--D--RQPEFTQLDMELAFTPLEDMLKLNEDLI 318 (652)
T ss_pred hc-cC-CcEEEEehhhccCCCCC--C--cccceeeeeeeecCCCHHHHHHHHHHHH
Confidence 00 11 37999999999999643 3 88999999999 6665455555544444
No 122
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.68 E-value=0.00022 Score=82.93 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|.+.+|+.|...||.||.||.|.... +|. .-..|.+. .-+..++|+=..+...-++.....
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~----~ga----~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~-- 301 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA----SGA----NAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGM-- 301 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC----CCC----CccceEeecccCCCCEEecCChHHHHHHHhhccc--
Confidence 357889999999999999999999999995431 221 12234442 125667787555544443333222
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
=|+|++|+|||+|.++.+ ..-||+|.|+| .|..-++..+..++++
T Consensus 302 -----erVyeIg~~FRnE~~~~r----H~pEFTmlE~y~a~~d~~d~m~l~E~li 347 (659)
T PTZ00385 302 -----ERIYEIGKVFRNEDADRS----HNPEFTSCEFYAAYHTYEDLMPMTEDIF 347 (659)
T ss_pred -----CCEEEEeceecCCCCCCC----ccccccceeeeeecCCHHHHHHHHHHHH
Confidence 379999999999997533 77999999999 4443345555444444
No 123
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.66 E-value=0.00025 Score=82.14 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|.+.+|+.|...||.||.||+|.... +|.. ..-|.. ..-+.+++||-..+...=++.....
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~----GGA~----a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~-- 321 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA----GGAN----ARPFITHHNDLDLDLYLRIATELPLKMLIVGGI-- 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC----Cccc----ceeEEecccCCCcceEEeecHHHHHHHHHHhCC--
Confidence 356789999999999999999999999997752 2221 111221 1224668888655555544443322
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
=|+|++|+|||+|.++++ ..-||+|.|+| .|+.-++..+..++++
T Consensus 322 -----~rVfeIgp~FRnE~~~~r----HnpEFTmlE~y~ay~dy~dlM~l~E~Li 367 (585)
T PTZ00417 322 -----DKVYEIGKVFRNEGIDNT----HNPEFTSCEFYWAYADFYDLIKWSEDFF 367 (585)
T ss_pred -----CCEEEEcccccCCCCCCC----ccceeeeeeeeeecCCHHHHHHHHHHHH
Confidence 379999999999997543 56899999999 5554455555444444
No 124
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.65 E-value=0.00022 Score=81.70 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|.+.+|+.|.+.||.||.||.|.+.. +|. .-..|.+. .-+..++|+-..+-..-++.....
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~----gga----~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~-- 240 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP----GGA----NARPFITHHNALDMDLYLRIAPELYLKRLIVGGF-- 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC----CCc----cceeEEeecccCCCceEEecCHHHHHHHHHhCCC--
Confidence 467889999999999999999999999997542 221 11224332 135677888665444434333222
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.++.+ ..-||+|.|+| .|..-++..+...+++.
T Consensus 241 -----~rVfeIg~~FRnE~~~~r----H~pEFTmlE~y~a~~d~~dlm~~~E~li~ 287 (496)
T TIGR00499 241 -----EKVYEIGRNFRNEGVDTT----HNPEFTMIEFYQAYADYEDLMDLTENLFK 287 (496)
T ss_pred -----CceEEEecceecCCCCCc----ccchhheeehhhhcCCHHHHHHHHHHHHH
Confidence 379999999999997543 67899999999 56544555555555554
No 125
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.64 E-value=0.00024 Score=80.71 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe---------eeCCceEEEcCCCcHHHHH
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT---------KSENRFYALKPMNCPGHIQ 338 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~---------~~~~~~~~LrP~~~~~~~~ 338 (783)
.-.+++..|...+++.|.+.||.||.||.|.... ..|. -+.|.+ +--+..++|+...+-.. .
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~---~eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q 201 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD---CEGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-E 201 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC---CCCC-----CCceEeecccccccccccCCCcccccCHHHHH-H
Confidence 3467889999999999999999999999998652 1122 234555 22356677876544333 3
Q ss_pred HHhcccccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 339 IYNSNFHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 339 ~~~~~~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
++.. .+ =|+|++++|||+|.+ +.+ -.-||+|.|+| .|..-++..+...+++
T Consensus 202 ~l~~------g~-~rVf~i~~~FR~E~~~t~r----Hl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 202 AYAM------AL-GKVYTFGPTFRAENSNTRR----HLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred HHHh------cc-CCeEEeeeccccCCCCCcc----ccccccccceEEeccCHHHHHHHHHHHH
Confidence 3322 12 378999999999985 222 23699999999 5555455555444444
No 126
>PLN02502 lysyl-tRNA synthetase
Probab=97.63 E-value=0.0003 Score=81.23 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|...+++.|...||.||.||.|.... +|. ...-|.+ ..-+..++|+=..+...-+++....
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----gGA----~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~-- 297 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----GGA----AARPFVTHHNDLNMDLYLRIATELHLKRLVVGGF-- 297 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----CCc----cccceeeecccCCcceeeecCHHHHHHHHHHhcc--
Confidence 357889999999999999999999999997542 221 1112322 2235677887555544434333322
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.++. -..-||+|.|+| .|..-++..+...+++.
T Consensus 298 -----~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~~E~li~ 344 (553)
T PLN02502 298 -----ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMELTEEMVS 344 (553)
T ss_pred -----CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHHHHHHHH
Confidence 37899999999998754 378999999999 66654555555555443
No 127
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.62 E-value=0.00024 Score=81.46 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|.+.+|+.|...||.||.||+|... .+|.. -.-|.. ..-+..++|+=..+-..-+++....
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~----~gGa~----a~pF~t~~~~~~~~~yL~~SpELylKrlivgG~-- 252 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGAS----ARPFITHHNALDLDMYLRIAPELYLKRLVVGGF-- 252 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec----CCCCc----ccceecccccCCcceeeecCHHHHHHHHHhccC--
Confidence 46788999999999999999999999999653 12210 011221 1234567787554444433333222
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.++++ ..-||+|.|+| .|+.-++..+...+++.
T Consensus 253 -----~rVfeIg~~FRnE~~~~r----H~pEFTmlE~y~a~~d~~d~m~l~E~li~ 299 (505)
T PRK12445 253 -----ERVFEINRNFRNEGISVR----HNPEFTMMELYMAYADYHDLIELTESLFR 299 (505)
T ss_pred -----CcEEEEehhccCCCCCCC----cCcccceeeeeeecCCHHHHHHHHHHHHH
Confidence 379999999999987544 67999999999 55544555555555543
No 128
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.59 E-value=0.00026 Score=80.36 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---------eCCceEEEcCCCcHHHHHHH
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---------SENRFYALKPMNCPGHIQIY 340 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---------~~~~~~~LrP~~~~~~~~~~ 340 (783)
.+++..|.+.+++.|.+.||.||.||+|....- .|. .++|.+. --+..++|+-...- +-.++
T Consensus 136 lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~---eg~-----~~~F~v~~~~~~~~~~~~~~~~yL~~Spql-~lq~l 206 (453)
T TIGR00457 136 MRVRNALSQAIHRYFQENGFTWVSPPILTSNDC---EGA-----GELFRVSTDGIDFSQDFFGKEAYLTVSGQL-YLETY 206 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC---CCC-----CCceEecccccccchhccCCccccccCHHH-HHHHH
Confidence 588999999999999999999999999976431 111 2334443 12455666644322 22222
Q ss_pred hcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHH
Q psy9574 341 NSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFN 400 (783)
Q Consensus 341 ~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~ 400 (783)
.. .+ =|+|++|+|||+|.++..+ -.-||+|.|+| .|..-++..+.+.+++
T Consensus 207 ~~------g~-~rVf~i~~~FR~E~~~t~r---Hl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 207 AL------AL-SKVYTFGPTFRAEKSNTSR---HLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred hh------cc-cCceEeeeccccCCCCCCc---CcchhccceeeeecCCHHHHHHHHHHHH
Confidence 11 22 3789999999999864211 23599999999 6665455444444433
No 129
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.58 E-value=0.00031 Score=82.57 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee-eCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK-SENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~-~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
.-.+++..+.+.+|+.|...||.||.||+|..... .|- ++-++... ..+.-|+|+- +.. +|++.+..
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eGA----r~~~~p~~~~~~~~y~L~q-SPQ----lykq~lm~ 221 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---EGA----RDYLVPSRIHPKEFYALPQ-SPQ----LFKQLLMI 221 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---CCC----cceEEeeecCCCcceecCC-CHH----HHHHHHHh
Confidence 34678899999999999999999999999986321 121 11111111 1233445552 222 22222110
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
..+ =|+||+++|||+|.++.. |.-||+|.|+| .|...++..+.+++++.
T Consensus 222 -~G~-~rvfqI~~~FR~E~~~t~----r~pEFT~LE~E~af~d~~dvm~l~E~li~ 271 (706)
T PRK12820 222 -AGF-ERYFQLARCFRDEDLRPN----RQPEFTQLDIEASFIDEEFIFELIEELTA 271 (706)
T ss_pred -ccC-CcEEEEechhcCCCCCCC----cCccccccceeeccCCHHHHHHHHHHHHH
Confidence 011 379999999999996433 77999999999 67655555555544443
No 130
>PLN02850 aspartate-tRNA ligase
Probab=97.52 E-value=0.00035 Score=80.51 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|.+.+++.|.+.||.||.||.|..... -|. -+.|.++--++.++|+-...-..-.+...
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---egg-----a~~F~v~yf~~~~~L~qSpql~kq~li~~------ 289 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---EGG-----SAVFRLDYKGQPACLAQSPQLHKQMAICG------ 289 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---ccc-----cceeeeccCCcceecCCCHHHHHHHHHHh------
Confidence 3577889999999999999999999999954321 121 23577666678888875433322222221
Q ss_pred CCCceEEEecceeecCCCC-CCCCcccceeEEEecee-EecCc-hhHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSG-SLHGMMRTRSFIQDDGH-IFCTK-SQIKNEIVVFN 400 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g-~~~GL~R~ReF~q~d~~-~f~~~-~~~~~e~~e~~ 400 (783)
.+ =|+|++|+|||+|.+. .+ -+-||+|.|++ .|+.. ++..+.+.+++
T Consensus 290 g~-~rVfeIgp~FRaE~s~t~R----Hl~EFt~Le~Em~~~~~y~evm~~~E~ll 339 (530)
T PLN02850 290 DF-RRVFEIGPVFRAEDSFTHR----HLCEFTGLDLEMEIKEHYSEVLDVVDELF 339 (530)
T ss_pred cC-CceEEEecccccCCCCCCc----cchhhccchhhhhhhcCHHHHHHHHHHHH
Confidence 22 2899999999999852 22 24699999999 67653 44444444444
No 131
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.29 E-value=0.00083 Score=77.56 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|...+|+.|.+.||.||.||.|.... .-|.. +.|.++--+..++|+-...-. ++.... .
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~---~egga-----~~F~v~yf~~~~~L~qSpql~-----kq~li~-~ 277 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP---SEGGA-----NVFKLEYFNRFAYLAQSPQLY-----KQMVLQ-G 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC---CCccc-----cccccccCCCCeecCCCHHHH-----HHHHHh-c
Confidence 357788999999999999999999999987653 11222 235444345777886433222 222111 0
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCc-hhHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTK-SQIKNEIVVFN 400 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~-~~~~~e~~e~~ 400 (783)
.+ =|+|++|+|||+|.++..+ -.-||+|.|+| .|+.. ++..+.+.+++
T Consensus 278 g~-~rVfeI~p~FRaE~s~T~R---Hl~EFt~Le~E~~~~~~y~evm~~~e~l~ 327 (550)
T PTZ00401 278 DV-PRVFEVGPVFRSENSNTHR---HLTEFVGLDVEMRINEHYYEVLDLAESLF 327 (550)
T ss_pred CC-CCEEEEeCeEeCCCCCCCC---CccchhhhhhhhHhcCCHHHHHHHHHHHH
Confidence 22 3799999999999974211 23599999997 56644 45555444444
No 132
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.28 E-value=0.0021 Score=74.30 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchH
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLS 301 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 301 (783)
.-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 4578999999999999999999999999997654
No 133
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.27 E-value=0.00075 Score=84.09 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.+++..|.+.+|+.|.+.||.||.||+|...+ +|. .-+.|.+ ..-+.+++|+-..+-..-++....
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~----gGa----~a~pF~t~~~~~~~~~yLriSPELylKrLivgG---- 837 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQQVH----GGA----NARPFVTHINAYDMDLYLRIAPELYLKRLCVGG---- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC----CCc----ccceeEeeecCCCccchhhcChHHHHHHHHhcc----
Confidence 56788999999999999999999999996332 121 1123433 223456777755444443333222
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
+ =|+|++|+|||+|.++.+ ..-||+|.|+| .|..-++..+..++++.
T Consensus 838 --~-erVFEIg~~FRnE~~~~r----HnpEFTmLE~y~a~~dy~d~m~l~E~li~ 885 (1094)
T PRK02983 838 --V-ERVFELGRNFRNEGVDAT----HNPEFTLLEAYQAHADYDTMRDLTRELIQ 885 (1094)
T ss_pred --c-CceEEEcceecCCCCCCC----ccccccchhhhhhcCCHHHHHHHHHHHHH
Confidence 1 379999999999997543 67899999999 45443555555555553
No 134
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0014 Score=72.32 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-++++..|...+++.|.+.||.+|.||.+...+. .-+.++|.++--+.+.+|.=. .+-+..++...+
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg~elF~v~yf~~~a~LtqS-~QLyke~~~~al---- 199 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT--------EGGGELFKVDYFDKEAYLTQS-PQLYKEALAAAL---- 199 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCCceeEEEeecCcceEEecC-HHHHHHHHHHHh----
Confidence 4688999999999999999999999999976643 224578887655555555421 111122222211
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVV 398 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e 398 (783)
=|+|.+|++||.|.+...+ -+-||+|.|++ .|+.-++..+-..+
T Consensus 200 ---~rVf~igP~FRAE~s~T~R---HL~EF~~ld~Emaf~~~~d~m~l~E~ 244 (435)
T COG0017 200 ---ERVFTIGPTFRAEKSNTRR---HLSEFWMLDPEMAFADLNDVMDLAEE 244 (435)
T ss_pred ---CceEEecCceecCCCCCcc---hhhhHheecceeccCcHHHHHHHHHH
Confidence 3789999999999975432 28899999999 56664444443333
No 135
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.21 E-value=0.0021 Score=74.35 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchH
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLS 301 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 301 (783)
-++++..+...+++.|.+.||.+|.||.|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 468899999999999999999999999997654
No 136
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.14 E-value=0.023 Score=63.01 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=63.1
Q ss_pred CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEeceeEecCchhHHHHHHHHHH
Q psy9574 323 NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 323 ~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~ 401 (783)
...+.||+-.+++..+...... .....|+|++++|+|||+|.. .+. +.++|+|.++-+.+..-. +.++..
T Consensus 180 s~~~lLRTHTTpgqirtL~~L~-~~~~~PiRIFsIGRVfRrD~~~DaT----Hl~eFhQlEGLVVdedVS----f~DLKg 250 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSII-DKRKLPLKLFSIDRCFRREQREDRS----HLMTYHSASCVVVDEEVS----VDDGKA 250 (533)
T ss_pred hhCcccccCChhHHHHHHHHHh-hcCCCCeEEEeeeeEEecCCCCCCc----cCceeeeEEEEEECCCCC----HHHHHH
Confidence 4567999999998877666421 234689999999999999952 233 689999999887776422 244577
Q ss_pred HHHHHHhhcCCeeEEEE
Q psy9574 402 LVHKVYNEFGFKKIKIK 418 (783)
Q Consensus 402 ~~~~i~~~lGl~~~~i~ 418 (783)
++..+++.||+..++++
T Consensus 251 vLe~LLr~LG~~~vRFR 267 (533)
T TIGR00470 251 VAEGLLAQFGFTKFRFR 267 (533)
T ss_pred HHHHHHHHhCCceEEec
Confidence 78889999987434443
No 137
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.08 E-value=0.004 Score=65.73 Aligned_cols=97 Identities=9% Similarity=0.101 Sum_probs=78.3
Q ss_pred CCceEEEEecCcchH-HHHHHHHHHhHhCCCeEEEEC-CCccHHHHHHHhhcCCCCEEEEEcccc------cccCceeEE
Q psy9574 537 APIQVMILNISKEQI-EYAKKVFNFLKSKKFRVEVDL-RNEKIAYKIRLHSLEKLPYIIIVGNKE------LCENKITER 608 (783)
Q Consensus 537 ap~qv~Vi~~~~~~~-~~a~~i~~~Lr~~gi~v~~d~-~~~~l~~k~~~A~~~gip~~iivG~~e------~~~~~V~vr 608 (783)
+-.+|+|++.+...+ ....+|+..|+++||++++-. ...++...+.+|...||+|+|+|-.++ -..+.|.||
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 347999999998766 899999999999999999933 346999999999999999999997754 223459999
Q ss_pred EeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhh
Q psy9574 609 EIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVD 656 (783)
Q Consensus 609 ~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~d 656 (783)
++ +.+.+ ..++.+|++..+.++...
T Consensus 84 ~l----------------------~~~~e-~dv~~~eLv~~l~~ei~~ 108 (273)
T PF12745_consen 84 SL----------------------EKKKE-TDVDRDELVDWLQQEIRE 108 (273)
T ss_pred cc----------------------CCCcc-cccCHHHHHHHHHHHHHh
Confidence 96 55554 578899999887665543
No 138
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.05 E-value=0.0036 Score=72.44 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeee--------C------------------
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKS--------E------------------ 322 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~--------~------------------ 322 (783)
-.+++..|...+++.|.+.||.+|.||+|...+- +-+.++|.+.. +
T Consensus 225 i~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~--------EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~ 296 (565)
T PLN02603 225 VARVRNALAYATHKFFQENGFVWVSSPIITASDC--------EGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWS 296 (565)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeecccCC--------CccccCceeeeccccccccccccccccccCcccccccc
Confidence 3588999999999999999999999999975531 11234444310 0
Q ss_pred ----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHH
Q psy9574 323 ----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKN 394 (783)
Q Consensus 323 ----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~ 394 (783)
++..+|.-.. +-+-.++.. .| =|+|++|+|||.|.+...+ -+-||+|.|+| .|..-++..+
T Consensus 297 ~dyF~~~~~LtvS~-QL~~E~~~~------~l-~rVy~igp~FRaE~s~T~R---HL~EF~mlE~E~af~dl~d~m~ 362 (565)
T PLN02603 297 QDFFGKPAFLTVSG-QLNGETYAT------AL-SDVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLNDDMA 362 (565)
T ss_pred hhhhCcceeeccCc-hHHHHHHHh------cc-cceEEEecceeCCCCCCcc---ccccceeeeeeeecCCHHHHHH
Confidence 0111222111 111111111 12 3689999999999963211 24699999999 5764444433
No 139
>PLN02532 asparagine-tRNA synthetase
Probab=97.00 E-value=0.0032 Score=73.21 Aligned_cols=33 Identities=6% Similarity=0.189 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchH
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLS 301 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 301 (783)
-++++..|...+++.|...||.+|.||+|...+
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 468899999999999999999999999996653
No 140
>PRK07440 hypothetical protein; Provisional
Probab=96.93 E-value=0.0051 Score=50.87 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=51.9
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee----cccccCCCceEEEeec
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD----LSYVIDHDVNLIIITE 62 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~~ 62 (783)
+|+|++ +|+.++++.++|+.++.+.++. ...-+|+.+|+++++ -.+++.+++.||++++
T Consensus 4 ~m~i~v-NG~~~~~~~~~tl~~lL~~l~~--~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 4 PITLQV-NGETRTCSSGTSLPDLLQQLGF--NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ceEEEE-CCEEEEcCCCCCHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 478888 8999999999999999998764 456789999999999 8889999999999975
No 141
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.78 E-value=0.0074 Score=49.40 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=51.9
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee----cccccCCCceEEEeec
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD----LSYVIDHDVNLIIITE 62 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~~ 62 (783)
||+|.+ +|+..++..++|+.|+.++++. ...-+|+.+||++++ .+..+..++.|+++.+
T Consensus 2 ~m~i~~-ng~~~e~~~~~tv~dLL~~l~~--~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 2 PMTIQL-NGKEVEIAEGTTVADLLAQLGL--NPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred cEEEEE-CCEEEEcCCCCcHHHHHHHhCC--CCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 578887 7999999999999999998864 457789999999999 9999999999999874
No 142
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=96.77 E-value=0.007 Score=49.40 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=49.4
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee----cccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD----LSYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+..++++|+|+.+++..++- ...-++..+|+++++ .+.++.+++.|+++.+
T Consensus 1 m~i~v-NG~~~~~~~~~tl~~lL~~l~~--~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 1 MNIQL-NGEPRELPDGESVAALLAREGL--AGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CEEEE-CCeEEEcCCCCCHHHHHHhcCC--CCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 57887 8999999999999999998764 344567779998888 8999999999999875
No 143
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.71 E-value=0.006 Score=50.51 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=50.1
Q ss_pred CeEEEEcCCe----EEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 1 MISIQISNEL----KLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 1 ~i~i~~~~g~----~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
||+|++ +|+ .++++.|+|+.+++++++.. ...++..+|++++..++.+.++++|+++.+
T Consensus 4 mm~v~v-ng~~~~~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKV-IGRGIEKEIEWRKGMKVADILRAVGFN--TESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEE-eccccceEEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 578887 566 67789999999999998643 356888999999999999999999999874
No 144
>KOG0554|consensus
Probab=96.61 E-value=0.026 Score=60.68 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=72.8
Q ss_pred eccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---eCCceEEEcCC----CcHHHH
Q psy9574 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---SENRFYALKPM----NCPGHI 337 (783)
Q Consensus 265 ~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~~~LrP~----~~~~~~ 337 (783)
+...-+++++++....+..|...+|..|.||++...|- .-.-+||.+. ....++.=||+ +...|.
T Consensus 127 ~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--------EGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhl 198 (446)
T KOG0554|consen 127 KVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--------EGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHL 198 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--------CCCcceEEEEecCcccccccCCceEEEEeceehH
Confidence 44556899999999999999999999999999977642 1135677752 12223333332 333444
Q ss_pred HHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecC
Q psy9574 338 QIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCT 388 (783)
Q Consensus 338 ~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~ 388 (783)
..++..+ -|.|-+|++||.|.+...+ -+-||+|.|++ .|+.
T Consensus 199 E~~a~~L-------srvyTfgP~FRAEnS~tsR---HLAEFwMlEaE~AF~~ 240 (446)
T KOG0554|consen 199 EAMACAL-------SRVYTFGPTFRAENSHTSR---HLAEFWMLEAELAFAE 240 (446)
T ss_pred HHHHhhh-------cceEeeccceecccCCchh---HHhhhhhhhhHHHHHH
Confidence 4443332 3689999999999974322 45689999999 6776
No 145
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=96.35 E-value=0.034 Score=65.14 Aligned_cols=132 Identities=14% Similarity=0.237 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHH-HhhhCCcccCCC-CceEe--eeCCceEEEcCCCcHHHHHHHhccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSL-WKKTGHWENYKD-NMFTT--KSENRFYALKPMNCPGHIQIYNSNF 344 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~-~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~ 344 (783)
...-.+.+.+.+++.+...||+|+.|..|.+.+. +..-|.. .+ .++++ ..+.+.-+||++..|++....+.+.
T Consensus 357 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~ 433 (552)
T PRK09616 357 RLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLE---PEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK 433 (552)
T ss_pred CCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCC---CCCCeEEEcCCCccchheEeccchHHHHHHHHhcc
Confidence 3344577788899999999999999999999865 6543321 11 24555 2356778999999999999988776
Q ss_pred ccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 345 HSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 345 ~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
+ +..|+++|++|+||+.+..+.. ..+|+++..+-+.+.+ ..+.++...+..++..+|++
T Consensus 434 ~--~~~~~~lFEiG~Vf~~~~~~~~----~~~e~~~l~~~~~g~~----~df~dlKg~ve~ll~~lgi~ 492 (552)
T PRK09616 434 H--REYPQKIFEIGDVVLIDESTET----GTRTERKLAAAIAHSE----ASFTEIKSVVQALLRELGIE 492 (552)
T ss_pred C--CCCCeeEEEeeEEEecCCcccc----CcchhhEEEEEEECCC----CCHHHHHHHHHHHHHHcCCe
Confidence 3 4679999999999987642111 2357888777766642 11455677778888888885
No 146
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.34 E-value=0.019 Score=46.87 Aligned_cols=58 Identities=10% Similarity=0.218 Sum_probs=48.8
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee----cccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD----LSYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.++++.++|+.++.++++. ..+-+|..+|+++++ -.+.+.+++.|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF-NDQPMQCAAGQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE-CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 57887 8999999999999999998764 345689999999987 4557899999999875
No 147
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.30 E-value=0.018 Score=47.13 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=50.0
Q ss_pred eEEEEcCCeEEEecCC-CCHHHHHHhhcccccCceEEEEECCEEeecc----cccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKP-ITVLDVASHISVNLAKTAIVGKLNGVLVDLS----YVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g-~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~----~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.++++.+ +|+.++++.++. ...-+|+.+|+++++=. +.+.+++.||++++
T Consensus 1 m~I~v-NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CEEEE-CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 57887 8999999998 799999998764 45678999999999887 88999999999985
No 148
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=96.27 E-value=0.016 Score=47.19 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=47.8
Q ss_pred EEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecc----cccCCCceEEEeec
Q psy9574 4 IQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLS----YVIDHDVNLIIITE 62 (783)
Q Consensus 4 i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~----~~i~~~~~i~~v~~ 62 (783)
|++ +|+.++++.++|+.++.+.+.. ....++..+||++++.. .++.++++|+++.+
T Consensus 2 i~i-Ng~~~~~~~~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 2 ITV-NGEPREVEEGATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred EEE-CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 455 7999999999999999999863 34556778999999998 89999999999875
No 149
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.017 Score=64.40 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
...+-+|++.+|+.+...||.||.||.|.+-. .|-. -.-|... .-+-+++||=..|-.+-++.....
T Consensus 180 f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~----GGA~----ArPF~ThhNald~dlyLRIApELyLKRliVGG~--- 248 (502)
T COG1190 180 FIKRSKIIRAIREFLDDRGFLEVETPMLQPIP----GGAA----ARPFITHHNALDMDLYLRIAPELYLKRLIVGGF--- 248 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEeccccccccC----CCcc----cccceeeecccCCceEEeeccHHHHHHHHhcCc---
Confidence 45678899999999999999999999986541 2221 1122221 224578899666666655554432
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH 384 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~ 384 (783)
=|+|++|++||+|.-..++- -||++.++|
T Consensus 249 ----erVfEIgr~FRNEGid~tHN----PEFTmlE~Y 277 (502)
T COG1190 249 ----ERVFEIGRNFRNEGIDTTHN----PEFTMLEFY 277 (502)
T ss_pred ----hhheeeccccccCCCccccC----cchhhHHHH
Confidence 27999999999997655543 799999887
No 150
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.10 E-value=0.025 Score=45.97 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=48.0
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeec----ccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDL----SYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+..+++.|+|+.++...+... +-++..+|+++++- ..++.++++|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 1 MDIQL-NQQTLSLPDGATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CEEEE-CCEEEECCCCCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 57887 89999999999999999987642 45788999999875 568999999999874
No 151
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.95 E-value=0.033 Score=45.35 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=47.9
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeec----ccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDL----SYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.+++ .++|+.++...+.. ....+++.+|+++++- +.++.+++.|+++.+
T Consensus 1 m~i~~-Ng~~~~~-~~~tl~~Ll~~l~~--~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV-NGETLQT-EATTLALLLAELDY--EGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE-CCeEEEc-CcCcHHHHHHHcCC--CCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 57887 7888888 56899999998764 3357889999999997 779999999999875
No 152
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.90 E-value=0.014 Score=69.58 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=57.2
Q ss_pred EEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCCh
Q psy9574 3 SIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDN 65 (783)
Q Consensus 3 ~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~ 65 (783)
-|.-|+|..+..+.|.|+.|.|=.+....+..+++|+|||++++|++++..+..||++|-+..
T Consensus 389 ~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT~~~~ 451 (702)
T PRK11092 389 YVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPGA 451 (702)
T ss_pred EEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCCCEEEEEeCCCC
Confidence 344488999999999999999999998889999999999999999999999999999996543
No 153
>KOG1885|consensus
Probab=95.81 E-value=0.011 Score=64.71 Aligned_cols=96 Identities=22% Similarity=0.201 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-ee-CCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KS-ENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~-~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
..++.+|+.++|+.+...||.||+||.|... ..|.. -.=|-. .. -+.+++||=..+--+-.++...+
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i----aGGA~----AkPFIT~hndldm~LylRiAPEL~lK~LvVGGl--- 293 (560)
T KOG1885|consen 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI----AGGAT----AKPFITHHNDLDMDLYLRIAPELYLKMLVVGGL--- 293 (560)
T ss_pred HHHHHHHHHHHHHHhhhcCceEecchhhccc----cCccc----cCceeecccccCcceeeeechHHHHHHHHhccH---
Confidence 4677899999999999999999999997533 11221 111222 22 24568888655555555555443
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEecee
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH 384 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~ 384 (783)
-|+|++|+.||+|--..+ ---||+-+|+|
T Consensus 294 ----drVYEIGr~FRNEGIDlT----HNPEFTTcEfY 322 (560)
T KOG1885|consen 294 ----DRVYEIGRQFRNEGIDLT----HNPEFTTCEFY 322 (560)
T ss_pred ----HHHHHHHHHhhhcCcccc----cCCCcchHHHH
Confidence 378999999999975433 34789888877
No 154
>PRK06437 hypothetical protein; Provisional
Probab=95.77 E-value=0.043 Score=44.98 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=43.8
Q ss_pred eEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecC
Q psy9574 10 LKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEK 63 (783)
Q Consensus 10 ~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~ 63 (783)
+.+++++++|+.|+++++... ..-+++.+||++++.++++.++++|+++.+-
T Consensus 13 ~~~~i~~~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 13 KTIEIDHELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEVF 64 (67)
T ss_pred eEEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEecc
Confidence 568899999999999998753 3345667999999999999999999999753
No 155
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=95.72 E-value=0.049 Score=46.69 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=49.1
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeec----ccccCCCceEEEeec
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDL----SYVIDHDVNLIIITE 62 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~~ 62 (783)
||+|++ +|+.++++.++|+.+++..++ .+...+|..+||++++= ...+.+++.||++.+
T Consensus 18 ~m~I~V-NG~~~~~~~~~tl~~LL~~l~--~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 18 LITISI-NDQSIQVDISSSLAQIIAQLS--LPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred eEEEEE-CCeEEEcCCCCcHHHHHHHcC--CCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 578888 899999999999999999875 45567888999998864 446888899999875
No 156
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.51 E-value=0.025 Score=66.42 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=56.8
Q ss_pred EEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCC
Q psy9574 4 IQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKD 64 (783)
Q Consensus 4 i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s 64 (783)
+.-|.|.+++.+.|.|+.|+|=.+....+..+++|+|||++++|++++..+..||+++-+.
T Consensus 391 vfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 391 VFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEIITSKH 451 (701)
T ss_pred EECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEEeCCC
Confidence 4447899999999999999998888888999999999999999999999999999999777
No 157
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.096 Score=55.93 Aligned_cols=86 Identities=14% Similarity=0.285 Sum_probs=49.4
Q ss_pred eEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHH
Q psy9574 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVH 404 (783)
Q Consensus 325 ~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~ 404 (783)
.+.||.-.|.+-+--+++. ..-.++|+++|.+-+|||.|.+-... |+-.++-+-+-+.+.+-..+. - -..+.
T Consensus 182 tlTLRSHMTsGWFItLs~i-~~r~~~PlklFSIDRCFRREQ~ED~s---hLmtYhSASCVvvde~vtvD~-G---KaVAE 253 (536)
T COG2024 182 TLTLRSHMTSGWFITLSEI-LKREDPPLKLFSIDRCFRREQREDAS---HLMTYHSASCVVVDEDVTVDD-G---KAVAE 253 (536)
T ss_pred ceehhhhcccceeeeHHHH-HhccCCCceeeehhHHhhhhhhcchh---hhhhhccceEEEEcCcccccc-c---HHHHH
Confidence 3455554444443323322 23348999999999999999863222 444444444444443211111 1 23567
Q ss_pred HHHhhcCCeeEEEE
Q psy9574 405 KVYNEFGFKKIKIK 418 (783)
Q Consensus 405 ~i~~~lGl~~~~i~ 418 (783)
.+++.|||+.+..+
T Consensus 254 glL~qfGFe~F~Fr 267 (536)
T COG2024 254 GLLRQFGFEKFRFR 267 (536)
T ss_pred HHHHHhCccceeec
Confidence 88999999876654
No 158
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=95.10 E-value=0.06 Score=54.36 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccCCCCC
Q psy9574 274 QEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSYRDLP 351 (783)
Q Consensus 274 ~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LP 351 (783)
+.+.+.+++.+...||+|+.|..|.+.+.+...+. + ..+..++ ....+.=+||++.-|++....+.+. +....|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~-~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~-~~~~~~ 78 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAELFDG-G--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNL-NRKNKP 78 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHhccC-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHh-cCCCCC
Confidence 45677889999999999999999999866554321 1 1234454 2345566899999999998888775 344689
Q ss_pred ceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hH------HHHHHHHHHHHHHHHhhcCC
Q psy9574 352 LRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QI------KNEIVVFNELVHKVYNEFGF 412 (783)
Q Consensus 352 lr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~------~~e~~e~~~~~~~i~~~lGl 412 (783)
+++|++|+||..+.. ..+|.....+-+.|... .. ...+.++-..+..++..+|+
T Consensus 79 ~~lFEiG~vf~~~~~-------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 79 LRLFEIGRVFLKDED-------GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGI 139 (198)
T ss_pred EeEEEeEeEEecCCC-------CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCC
Confidence 999999999965431 11244333333333211 00 01245556667777777776
No 159
>PLN02788 phenylalanine-tRNA synthetase
Probab=95.10 E-value=0.59 Score=51.97 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHc---CCeEee--cCcccchHHHhhh----CCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcc
Q psy9574 273 LQEIKKYMRKIYKYN---GYKEIK--TPQMLDLSLWKKT----GHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSN 343 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~---G~~ev~--tP~l~~~~l~~~s----g~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~ 343 (783)
...+.+.+.+.|... ||+.+. .|+.....-|..- .|-..=..+.|.++ +..+||.=+++..++++.+.
T Consensus 70 l~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~---~~~lLRTHTSa~q~~~l~~~ 146 (402)
T PLN02788 70 LGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD---AQTVLRCHTSAHQAELLRAG 146 (402)
T ss_pred HHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec---CCccccCCCcHHHHHHHHhC
Confidence 445556666666665 999998 4554433333331 22111123445552 46789986666667777642
Q ss_pred cccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhH--------HHHHHHHHHHHHHHHhhc-CC
Q psy9574 344 FHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQI--------KNEIVVFNELVHKVYNEF-GF 412 (783)
Q Consensus 344 ~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~--------~~e~~e~~~~~~~i~~~l-Gl 412 (783)
.| ++...|+|||+|.-.+. -+.+|+|.|+-.....++. .-.+..+..++..++..+ |+
T Consensus 147 ------~~-~~~~~g~VyRrD~iD~t----H~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~ 213 (402)
T PLN02788 147 ------HT-HFLVTGDVYRRDSIDAT----HYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGD 213 (402)
T ss_pred ------CC-cEEEEeeEeecCCCCcc----cCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCC
Confidence 13 89999999999985444 5689999998877543211 011234445555666655 54
No 160
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.86 E-value=0.047 Score=65.14 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=56.8
Q ss_pred EEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCCh
Q psy9574 3 SIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDN 65 (783)
Q Consensus 3 ~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~ 65 (783)
-|.-|+|..+.++.|.|+.|+|-.+....+...++|+|||+.++|++++.++..||+++-+..
T Consensus 407 ~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIits~~~ 469 (743)
T PRK10872 407 YVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQP 469 (743)
T ss_pred EEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEeCCCC
Confidence 344489999999999999999999988888999999999999999999999999999995543
No 161
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.76 E-value=0.058 Score=64.54 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=57.4
Q ss_pred EEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCCh
Q psy9574 3 SIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDN 65 (783)
Q Consensus 3 ~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~ 65 (783)
-|.-|+|..+.++.|+|+.|+|-.+....+...++|+|||+.++|++++.++..|++++-+..
T Consensus 363 ~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~ 425 (683)
T TIGR00691 363 YVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS 425 (683)
T ss_pred EEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC
Confidence 344589999999999999999999988888999999999999999999999999999996654
No 162
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=94.71 E-value=0.13 Score=41.67 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=45.4
Q ss_pred EEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee----cccccCCCceEEEeec
Q psy9574 5 QISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD----LSYVIDHDVNLIIITE 62 (783)
Q Consensus 5 ~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~~ 62 (783)
++ +|+..+++.++|+.++++.++.. ...++..+|+++++ -.+.+.+++.|+++.+
T Consensus 2 ~i-Ng~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 2 TV-NGEPVEVEDGLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred EE-CCeEEEcCCCCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 44 79999999999999999988643 46778899999985 3458999999999874
No 163
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.16 E-value=0.15 Score=41.39 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=45.6
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee---cccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD---LSYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~---L~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|..+++++++|+.+++..++- ...-+|..+|+++++ ....+.+++.|+++.+
T Consensus 1 m~i~v-NG~~~~~~~~~tl~~ll~~l~~--~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV-NEEQVEVDEQTTVAALLDSLGF--PEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CEEEE-CCEEEEcCCCCcHHHHHHHcCC--CCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 57887 8999999999999999998753 456788889996321 2235888999999874
No 164
>KOG0556|consensus
Probab=93.69 E-value=0.08 Score=57.12 Aligned_cols=100 Identities=24% Similarity=0.298 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
++..-+...+|+.+...||.+|.||-|.... ..-+.++|.++--++.-||.- .|. ++++... ..++
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~as--------SEGGanvF~v~Yfk~~A~LAQ--SPQ---LyKQMaI-~gdf 294 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGAS--------SEGGANVFRVSYFKQKAYLAQ--SPQ---LYKQMAI-CGDF 294 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceeccccccccc--------CCCCceeEEEEeccCcchhhc--ChH---HHHHHHH-hcch
Confidence 4556778889999999999999999875442 133567888764333333331 111 1221111 0121
Q ss_pred CceEEEecceeecCCCCCCCCcccceeEEEecee-EecC
Q psy9574 351 PLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCT 388 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~ 388 (783)
-|+|++|+|||.|.|. .+- -+-||.-.|++ -|+.
T Consensus 295 -~rVyeIGpVfRAEdSn-thR--hltEFvGLD~EMaf~~ 329 (533)
T KOG0556|consen 295 -ERVYEIGPVFRAEDSN-THR--HLTEFVGLDLEMAFNE 329 (533)
T ss_pred -hheeeecceeeccccc-hhh--hhHHhhCcchhhHHHH
Confidence 3799999999999974 333 56789888888 4544
No 165
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=92.75 E-value=0.33 Score=51.93 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=49.6
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEee----cccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVD----LSYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.+++..++|+.|+++.++.. ..-|+..+||++++ -++++.+++.||++.+
T Consensus 1 M~I~V-NGk~~el~e~~TL~dLL~~L~i~--~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL-NGEPRQVPAGLTIAALLAELGLA--PKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE-CCEEEecCCCCcHHHHHHHcCCC--CCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 57887 89999999999999999988643 44567779999999 7779999999999985
No 166
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=92.54 E-value=0.64 Score=54.56 Aligned_cols=131 Identities=15% Similarity=0.215 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHH-hhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLW-KKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~-~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
..-.+.+.+.+++.+...||+|+.|-.|.+.+.+ ..-+.. .++...+ ..+.+.=+||++.-|++....+.+.
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~---~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-- 435 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIE---DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-- 435 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccC---CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--
Confidence 3345677888899999999999999999998543 433221 1233444 2345667899999999999888776
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
.+..|+++|++|++|.....+. .+.+++....+-+.+.. ..+.++-.....++..||++
T Consensus 436 ~~~~~~~lFEiG~Vf~~~~~~~----~~e~~~~~l~~~~~g~~----~df~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 436 HHELPQKIFEIGDVVVKDDKSE----TRSRVVTKLAVGITHSE----ANFNEIKSIVAALARELGIE 494 (551)
T ss_pred cCCCCeeEEEEEEEEEcCCccc----cccceeeEEEEEEECCC----CCHHHHHHHHHHHHHHcCCc
Confidence 3578999999999995432111 13444455544444431 12455667778888888875
No 167
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.43 E-value=0.41 Score=40.78 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=41.9
Q ss_pred eEEEecCCCCHHHHHHhhcccc---cC--ceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 10 LKLQFSKPITVLDVASHISVNL---AK--TAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 10 ~~~~~~~g~t~~~i~~~~~~~~---~~--~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
...+++.|+|+.++.+.+...+ .. ..++..||++.++.+.++.++++|.++..
T Consensus 21 ~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 21 MTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPP 78 (82)
T ss_pred EEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCC
Confidence 4567788999999998875433 11 34667899999999999999999999863
No 168
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=91.57 E-value=0.86 Score=35.83 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=45.8
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEee
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
|+|.+ +|+.++++.++|++++.+++.+.. . ...+||-...=+..+.++.+|-|+-
T Consensus 1 M~I~v-N~k~~~~~~~~tl~~lr~~~k~~~--D--I~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV-NEKEIETEENTTLFELRKESKPDA--D--IVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CEEEE-CCEEEEcCCCcCHHHHHHhhCCCC--C--EEEEcCcccCCccccCCCCEEEEEe
Confidence 57887 899999999999999999987642 2 4478998888889999999998874
No 169
>KOG0555|consensus
Probab=91.24 E-value=0.42 Score=51.55 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRD 349 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 349 (783)
.+++.++.+.+|+.+...||.||.+|+|+.+.+= -+..+|+++-=|++-+|-- +--.++-. -
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVE--------GGsTLFkldYyGEeAyLTQ----SSQLYLEt------c 304 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQVE--------GGSTLFKLDYYGEEAYLTQ----SSQLYLET------C 304 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEec--------CcceEEeecccCchhhccc----hhHHHHHH------h
Confidence 4667888999999999999999999999988662 1345666654455544432 11111111 1
Q ss_pred CC--ceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHH-HHHHHHHHHh
Q psy9574 350 LP--LRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVV-FNELVHKVYN 408 (783)
Q Consensus 350 LP--lr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e-~~~~~~~i~~ 408 (783)
|| -.+|.|+..||.|.|..++ -+-||+..+++ -|-+=++..+-++. +.+.+.++|+
T Consensus 305 lpAlgdvy~I~~SyRAEkSrTRR---HLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~ 364 (545)
T KOG0555|consen 305 LPALGDVYCIQQSYRAEKSRTRR---HLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLE 364 (545)
T ss_pred hhhcCceeEecHhhhhhhhhhhh---hhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHh
Confidence 23 2589999999999975433 46799999999 45444544333322 2334444444
No 170
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=90.46 E-value=1.4 Score=52.26 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHH-HhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSL-WKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.-.+.+.+.+++.+...||+|+.|-+|.+.+. +..-+..+ -......+ ....+.-+||++.-|++....+.+..
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~-~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~-- 473 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNRED-DGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKD-- 473 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCc-cCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhc--
Confidence 34678888999999999999999999998855 65433211 01123444 23455668999999999888876653
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
+.+|+|+|++|.||-.+.. ...| .+|.....+-+.+.. ..+.++..++..++..||++
T Consensus 474 ~~~p~klFEiG~V~~~~~~-~~~~---~~e~~~la~~~~g~~----~~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 474 APKPIKLFEVSDVVLLDES-KDVG---ARNSRRLAALYCGTT----SGFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CCCCeeEEEeEeEEecCCc-ccCC---cchhhEEEEEEECCC----CCHhhHHHHHHHHHHHcCCc
Confidence 3569999999999954331 1111 134433333333321 12455677778888888885
No 171
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=90.16 E-value=21 Score=40.44 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred eccChhHHHHHHHHHHHHHHH----HcCCeEeec--CcccchHHHhhh----CCcccCCCCceEeeeCCceEEEcCCCcH
Q psy9574 265 WHPKGYIILQEIKKYMRKIYK----YNGYKEIKT--PQMLDLSLWKKT----GHWENYKDNMFTTKSENRFYALKPMNCP 334 (783)
Q Consensus 265 ~lP~g~~l~~~l~~~~~~~~~----~~G~~ev~t--P~l~~~~l~~~s----g~~~~~~~~my~~~~~~~~~~LrP~~~~ 334 (783)
.+|. ..+++.|++++..... .-||+-++. |+.....-|..- .|-..=..+.|.+ ++..+||.=+.+
T Consensus 41 ~HPl-~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi---~~~~lLRTHTSa 116 (460)
T TIGR00469 41 DHPL-GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI---NEQHLLRAHTSA 116 (460)
T ss_pred CCcH-HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe---cCCceeCCCCcH
Confidence 3454 3455556655544321 118888887 865555555542 2322222345555 356889987777
Q ss_pred HHHHHHhcccccCCCCCce--EEEecceeecCCCCCCCCcccceeEEEeceeEecC
Q psy9574 335 GHIQIYNSNFHSYRDLPLR--FGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT 388 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr--~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~ 388 (783)
...+++...... .-|++ +...|.|||++.-... -+..|+|.|.-....
T Consensus 117 ~q~~~~~~~~~~--~~~~~~~~i~~G~VYRrD~iDat----H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 117 HELECFQGGLDD--SDNIKSGFLISADVYRRDEIDKT----HYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHHHHhcccc--CCCcceeeEeecceeeCCCCccc----cCccceeeEEEEEec
Confidence 777877754322 24777 8899999999974343 567899999764443
No 172
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.46 E-value=0.81 Score=38.51 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=43.0
Q ss_pred EEEecCCCCHHHHHHhhcccc------cCceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 11 KLQFSKPITVLDVASHISVNL------AKTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~------~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
..+++.|+|+.|+.+.+...+ ..+.+++.||++.++.+.++.++++|.++..
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 19 ELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 346667899999999887543 2467899999999999999999999999863
No 173
>KOG2784|consensus
Probab=88.40 E-value=0.28 Score=52.33 Aligned_cols=137 Identities=16% Similarity=0.242 Sum_probs=86.6
Q ss_pred EeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh------hCCcccCCCCceEe-e----------------
Q psy9574 264 FWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK------TGHWENYKDNMFTT-K---------------- 320 (783)
Q Consensus 264 ~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~------sg~~~~~~~~my~~-~---------------- 320 (783)
.++|. .++..-+|++|-..||.|+-|-..+....|.= -.|-..-..+.|.+ +
T Consensus 210 ~lHPL-----mKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk 284 (483)
T KOG2784|consen 210 HLHPL-----MKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVK 284 (483)
T ss_pred ccchH-----HHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHH
Confidence 36663 56777888889999999999888776666631 01111111122322 1
Q ss_pred ----e---------------CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEe
Q psy9574 321 ----S---------------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQD 381 (783)
Q Consensus 321 ----~---------------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~ 381 (783)
. +-+...||--+|..-++++-+... ..--|.|++.|-+|||+|.-.+. -+-||+|.
T Consensus 285 ~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk-~~f~p~K~FSIDrVFRNEtvDaT----HLAEFHQV 359 (483)
T KOG2784|consen 285 AVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAK-KGFKPAKYFSIDRVFRNETVDAT----HLAEFHQV 359 (483)
T ss_pred HHHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHh-CCCCcccccchhhhhhccccchH----HHHHHhhh
Confidence 0 113467776555544555433221 12359999999999999985433 67899999
Q ss_pred ceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 382 DGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 382 d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
+.-+-+..-.. ..++.+..++++.+|.+.
T Consensus 360 EGviad~gltL----gdLig~l~~ff~~lg~tn 388 (483)
T KOG2784|consen 360 EGVIADKGLTL----GDLIGILMEFFTKLGATN 388 (483)
T ss_pred ceeeecCCCcH----HHHHHHHHHHHhccCCcc
Confidence 98776554222 235788899999999864
No 174
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=87.98 E-value=1.3 Score=36.85 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=45.5
Q ss_pred eEEEecCCCCHHHHHHhhccccc----CceEEEEECCEEeec---ccccCCCceEEEeec
Q psy9574 10 LKLQFSKPITVLDVASHISVNLA----KTAIVGKLNGVLVDL---SYVIDHDVNLIIITE 62 (783)
Q Consensus 10 ~~~~~~~g~t~~~i~~~~~~~~~----~~~v~a~vn~~~~~L---~~~i~~~~~i~~v~~ 62 (783)
....+..++|+.++.+.+...++ ...++..||++..+. +.++.++++|.++..
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 45678889999999999987764 266888999999999 999999999999864
No 175
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=87.88 E-value=0.85 Score=38.20 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=41.7
Q ss_pred eEEEecCCCCHHHHHHhhcccccCceEEEE-------ECCEEeecccccCCCceEEEee
Q psy9574 10 LKLQFSKPITVLDVASHISVNLAKTAIVGK-------LNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 10 ~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~-------vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
....++.|+|+.|++..+..........|. ++|+.+.+++++.++..|++++
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 356788999999999988765545555555 4999999999999999999863
No 176
>PRK01777 hypothetical protein; Validated
Probab=87.15 E-value=2.9 Score=36.74 Aligned_cols=59 Identities=12% Similarity=-0.031 Sum_probs=45.0
Q ss_pred EEEecCCCCHHHHHHhhcccccCc-e----EEEEECCEEeecccccCCCceEEEeecCChhhHH
Q psy9574 11 KLQFSKPITVLDVASHISVNLAKT-A----IVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLN 69 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~~~-~----v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~ 69 (783)
..+++.|+|+.|+++..+.....+ + ...-|||+.+++++++.++..|++..--..+-+.
T Consensus 20 ~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL~~DPk~ 83 (95)
T PRK01777 20 RLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPLLADPKE 83 (95)
T ss_pred EEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCCCCCHHH
Confidence 457889999999999877433322 2 3556899999999999999999998755544443
No 177
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=85.32 E-value=2.3 Score=48.52 Aligned_cols=83 Identities=16% Similarity=0.283 Sum_probs=53.9
Q ss_pred CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHH
Q psy9574 323 NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNEL 402 (783)
Q Consensus 323 ~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~ 402 (783)
...-+||++..+++....+.++. .+..|+++|++|+|||.+... ..- ++..+.+. ..+..+++.. +.++..+
T Consensus 181 ~~~svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d~~e-E~t--~La~llsG--s~W~~~e~vD--FfDlKGi 252 (529)
T PRK06253 181 SSRLTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRREQRE-DAS--RLMTYHSA--SCVIADEDVT--VDDGKAV 252 (529)
T ss_pred cccCccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecCCcc-chh--heeEEEEc--cccccCCCCC--HHHHHHH
Confidence 34568999999999888877653 458899999999999886411 111 33344433 1112222211 4556777
Q ss_pred HHHHHhhcCCe
Q psy9574 403 VHKVYNEFGFK 413 (783)
Q Consensus 403 ~~~i~~~lGl~ 413 (783)
+..++..||++
T Consensus 253 LE~LL~~LGI~ 263 (529)
T PRK06253 253 AEGLLSQFGFT 263 (529)
T ss_pred HHHHHHHcCCC
Confidence 78888889885
No 178
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=83.34 E-value=2.7 Score=35.36 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=40.3
Q ss_pred EEEecCCCCHHHHHHhhcccccCce---EEEEECCEEeecccccCCCceEEEee
Q psy9574 11 KLQFSKPITVLDVASHISVNLAKTA---IVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~~~~---v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
...++.|+|..|+|..+.....+.. +.++ |++.+.+++++.++..|++++
T Consensus 24 ~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 24 AFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 3567889999999998776554542 3456 999999999999999999874
No 179
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=76.71 E-value=10 Score=45.87 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
+....+.+.+.+++.+...||+|+.|-.|.+.+.+ .++...+ ..+.+.=+||++.-|++....+.+. +
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~---------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~-~ 465 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF---------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENL-K 465 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc---------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHH-h
Confidence 34445677888899999999999999999888642 1133444 2345667899999999998888665 3
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc--------hhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK--------SQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~--------~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
....|+++|++|.||-... . + .+|-...-+-+.+.. ......+.++-..+..++..+|++
T Consensus 466 r~~~~~rlFEiG~Vf~~~~---~-~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~ 533 (704)
T CHL00192 466 QGNSTLEGFEIGHVFNLDS---S-S---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNLP 533 (704)
T ss_pred cCCCCEeEEEeeeeEcCCC---c-c---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCCc
Confidence 3467999999999994321 1 1 122222222233311 000112455666777778888875
No 180
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=76.70 E-value=6.9 Score=46.90 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
+..-.+...+.+++.+...||+|+.|-.|.+.+.....+... ++-..+ ..+.+.-+||++.-|++...++.+.
T Consensus 349 ~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~---~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~-- 423 (650)
T COG0072 349 GLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLEN---DEALELANPISEEYSVLRTSLLPGLLEALSYNK-- 423 (650)
T ss_pred CCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCC---CcceEecCCcchhHHHHHHHHHHHHHHHHHHhh--
Confidence 345567788889999999999999999999999887644311 112222 2234556788888888888887664
Q ss_pred CCCCC-ceEEEecceeecCCC
Q psy9574 347 YRDLP-LRFGEFGQCHRNESS 366 (783)
Q Consensus 347 ~~~LP-lr~~~~g~~fR~E~~ 366 (783)
.+..| +++|++|.+|-.+..
T Consensus 424 ~r~~~~~~iFEiG~v~~~~~~ 444 (650)
T COG0072 424 NRKNPDVRIFEIGDVFVKDEE 444 (650)
T ss_pred ccCCCCeeEEEeeeeEecCCc
Confidence 35789 999999999998763
No 181
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=76.02 E-value=13 Score=31.39 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=42.7
Q ss_pred CeEEEEcC------C-eEEEec-CCCCHHHHHHhhccccc-------CceEEEEECCEEeecccccCCCceEEEee
Q psy9574 1 MISIQISN------E-LKLQFS-KPITVLDVASHISVNLA-------KTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 1 ~i~i~~~~------g-~~~~~~-~g~t~~~i~~~~~~~~~-------~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
||+|.+.. | ...+++ .++|+.++.+.+...++ ..-+..-||++..++++++.++++|.|+-
T Consensus 1 ~v~V~~Fa~lre~~g~~~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 1 MIKVLFFAQVRELVGTDALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CEEEEEeHHHHHHhCCceEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 56666541 3 334554 37899999887754331 23355778999999999999999998874
No 182
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=75.07 E-value=11 Score=46.55 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhcccccCCCCC
Q psy9574 274 QEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHSYRDLP 351 (783)
Q Consensus 274 ~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LP 351 (783)
+...+.+++.+...||+|+.|-.|.+.+.+...+... .+...++. ...+.=+||+..-|++....+.+.. ...-|
T Consensus 494 ~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~--~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~-~~~~~ 570 (798)
T TIGR00472 494 YLLLRKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPK--LENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQN-RKNKD 570 (798)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCHHHHHhhcCCC--CCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHh-CCCCC
Confidence 3333678889999999999999999986655443211 11244442 3455568999999999888776653 34668
Q ss_pred ceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-h------HHHHHHHHHHHHHHHHhhcCCe
Q psy9574 352 LRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-Q------IKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 352 lr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~------~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
+++|++|.||..... + .+|.....+-+-+... . ....+.++-..+..++..+|+.
T Consensus 571 ~~lFEiG~V~~~~~~----~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 571 VKIFEIGKVFAKDGL----G---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred EeEEeeecccCCCCC----C---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999999999953211 0 2233333222222110 0 0012455666777777777764
No 183
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=71.05 E-value=11 Score=31.72 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=40.1
Q ss_pred EEEecCC-CCHHHHHHhhccccc-----CceEEEEECCEEeecccccCCCceEEEee
Q psy9574 11 KLQFSKP-ITVLDVASHISVNLA-----KTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 11 ~~~~~~g-~t~~~i~~~~~~~~~-----~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
..+++.+ +|+.++...+...++ ...+...||++..+.+.++..+++|.++-
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 3456655 899999988865442 14567889999999999999999999875
No 184
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=69.11 E-value=14 Score=31.55 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=41.7
Q ss_pred EEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 11 KLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
...+..++|+.+++..++.-+ ..+=+..|||+.+++++.+..+..|.+.-.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~-tEV~~i~vNG~~v~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPH-TEVGLILVNGRPVDFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EEecCCCCcHHHHHHHcCCCh-HHeEEEEECCEECCCcccCCCCCEEEEEec
Confidence 356778999999999998544 246677899999999999999999887653
No 185
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=66.43 E-value=7.8 Score=47.71 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
....+.+.+.+++.+...||+|+.|-.|.+.+....-+.. .....+ ....+.=+||++.-|++....+.+.. .
T Consensus 486 ~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~----~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~-~ 560 (791)
T PRK00629 486 LTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLN----PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLN-R 560 (791)
T ss_pred CCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCC----CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHh-C
Confidence 3445667788899999999999999999988665533311 123333 23455568999999999888876653 3
Q ss_pred CCCCceEEEecceeec
Q psy9574 348 RDLPLRFGEFGQCHRN 363 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~ 363 (783)
...|+++|++|+||..
T Consensus 561 ~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 561 GNKDVALFEIGRVFLP 576 (791)
T ss_pred CCCCEeEEeeeeeeCC
Confidence 4679999999999954
No 186
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=65.95 E-value=26 Score=36.00 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+.++...++ +.|.||.++|-.. ...+....+.+.|+++||+|.+.... -..++..|
T Consensus 72 ~~emi~ia~~---------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A 140 (237)
T TIGR00559 72 TEEMIRIAEE---------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAA 140 (237)
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHH
Confidence 5677777666 4689999999762 24567788899999999999998643 36789999
Q ss_pred hcCCCCEE
Q psy9574 585 SLEKLPYI 592 (783)
Q Consensus 585 ~~~gip~~ 592 (783)
...|++.+
T Consensus 141 ~~~GAd~V 148 (237)
T TIGR00559 141 AEVGADRI 148 (237)
T ss_pred HHhCcCEE
Confidence 99999976
No 187
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=63.20 E-value=19 Score=30.90 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=37.4
Q ss_pred EEecCCCCHHHHHHhhcccccC-------------ceEEEEECCEEeeccc--ccCCCceEEEee
Q psy9574 12 LQFSKPITVLDVASHISVNLAK-------------TAIVGKLNGVLVDLSY--VIDHDVNLIIIT 61 (783)
Q Consensus 12 ~~~~~g~t~~~i~~~~~~~~~~-------------~~v~a~vn~~~~~L~~--~i~~~~~i~~v~ 61 (783)
.+++ |+|+.++.+.+...++. +-+...||++..+-.. ++.++++|.++.
T Consensus 20 v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 20 IEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 3455 89999999888654431 2377889999887766 999999998875
No 188
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=62.18 E-value=14 Score=30.95 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHH
Q psy9574 109 KRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAY 147 (783)
Q Consensus 109 ~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~ 147 (783)
+.++|.+.|..|.++||++.+..+--.|..+|.|-..++
T Consensus 42 g~pFs~d~IN~vT~~mN~LAk~givP~Rk~VT~eMV~EY 80 (84)
T PF10752_consen 42 GEPFSTDKINEVTKEMNELAKQGIVPTRKYVTVEMVKEY 80 (84)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCCcchhccHHHHHHH
Confidence 568999999999999999999999889999998766554
No 189
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=61.82 E-value=22 Score=29.81 Aligned_cols=50 Identities=26% Similarity=0.136 Sum_probs=41.9
Q ss_pred EEecCCCCHHHHHHhhcccccCceEEEEECC-EEeecccccCCCceEEEee
Q psy9574 12 LQFSKPITVLDVASHISVNLAKTAIVGKLNG-VLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 12 ~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~-~~~~L~~~i~~~~~i~~v~ 61 (783)
..+.+|+|+.|+|..+.....+..+.|.+-+ +.+.+++.+.++.-|+|++
T Consensus 26 ~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 26 VLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred EEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 4677899999999998877777778888876 8899999998888888763
No 190
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=61.82 E-value=31 Score=35.56 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+.++...++ +.|-||.++|-.. ...+....+.+.|+++||+|.+... .--.++..|
T Consensus 75 ~~em~~ia~~---------~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A 143 (239)
T PRK05265 75 TEEMLDIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAA 143 (239)
T ss_pred CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHH
Confidence 5667776665 5789999999762 2467778889999999999999873 456789999
Q ss_pred hcCCCCEE
Q psy9574 585 SLEKLPYI 592 (783)
Q Consensus 585 ~~~gip~~ 592 (783)
...|++.+
T Consensus 144 ~~~GAd~V 151 (239)
T PRK05265 144 AEVGADRI 151 (239)
T ss_pred HHhCcCEE
Confidence 99999976
No 191
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=61.78 E-value=30 Score=41.51 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=48.3
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcc-------------cccCceEEEEECC--EE-eecccccCCCceEEEeecCC
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISV-------------NLAKTAIVGKLNG--VL-VDLSYVIDHDVNLIIITEKD 64 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~-------------~~~~~~v~a~vn~--~~-~~L~~~i~~~~~i~~v~~~s 64 (783)
|++|++ ||+++++++|.|+.+.+.+.+. ..+-...++.|+| ++ -+-..|+.++.. |..+|
T Consensus 1 m~tI~I-DG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~---I~T~s 76 (693)
T COG1034 1 MVTITI-DGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMV---ISTNS 76 (693)
T ss_pred CeEEEE-CCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeE---EecCC
Confidence 899998 9999999999999999988552 1233445667777 32 333445555443 55566
Q ss_pred hhhHHHHHHHHHHHHH
Q psy9574 65 NIGLNIIRHSTAHLLA 80 (783)
Q Consensus 65 ~~g~~~y~hS~~~lL~ 80 (783)
++-...=+--..+||.
T Consensus 77 ~~vk~~R~~vmE~LLi 92 (693)
T COG1034 77 EEVKKAREGVMEFLLI 92 (693)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6655443333444443
No 192
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=61.33 E-value=32 Score=35.33 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+.++...++ +.|-||.++|-.. ...+....+.+.|+++||+|.+.... -..++..|
T Consensus 72 t~em~~ia~~---------~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A 140 (234)
T cd00003 72 TEEMLEIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAA 140 (234)
T ss_pred CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHH
Confidence 5667776666 5689999999762 24677788899999999999998643 36789999
Q ss_pred hcCCCCEE
Q psy9574 585 SLEKLPYI 592 (783)
Q Consensus 585 ~~~gip~~ 592 (783)
.+.|++.+
T Consensus 141 ~~~GAd~V 148 (234)
T cd00003 141 KEVGADRV 148 (234)
T ss_pred HHhCcCEE
Confidence 99999976
No 193
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=61.16 E-value=36 Score=35.11 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+.++...++ +.|-||.++|-+. ...+....+.+.|+++||+|.+.... --.+++.|
T Consensus 73 t~e~~~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP--~~~qi~~A 141 (239)
T PF03740_consen 73 TEEMVDIALK---------VKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP--DPEQIEAA 141 (239)
T ss_dssp SHHHHHHHHH---------H--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHH
T ss_pred CHHHHHHHHh---------CCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC--CHHHHHHH
Confidence 5677776666 4689999999762 34678888999999999999987642 36789999
Q ss_pred hcCCCCEE
Q psy9574 585 SLEKLPYI 592 (783)
Q Consensus 585 ~~~gip~~ 592 (783)
.+.|++++
T Consensus 142 ~~~Gad~V 149 (239)
T PF03740_consen 142 KELGADRV 149 (239)
T ss_dssp HHTT-SEE
T ss_pred HHcCCCEE
Confidence 99999976
No 194
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=59.33 E-value=9.6 Score=47.29 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHh-cccccCCCCC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYN-SNFHSYRDLP 351 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~-~~~~s~~~LP 351 (783)
.+.|.+.+.+.|++.|...|..-.+.+. | . ++++.+.. +=.++-.+|- ... +-|
T Consensus 61 ~~eiR~~Fl~FF~~~gH~~v~s~pvvpr--w------~---dDllft~A----------gm~~Fkp~f~~G~~----~pp 115 (900)
T PRK13902 61 LKEMREKFLSFFEKHGHTRIERYPVVAR--W------R---DDVYLTIA----------SIYDFQPWVTSGLV----PPP 115 (900)
T ss_pred HHHHHHHHHHHHHhCCCEEcCCcCcCCC--C------C---CCeeeeec----------chhhhhHHhcCCCC----CCC
Confidence 4678888889999999999987777662 1 1 11221100 0001111121 111 112
Q ss_pred -ceEEEecceeecCCCCCCCCcc-c-ceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhh-cCCee
Q psy9574 352 -LRFGEFGQCHRNESSGSLHGMM-R-TRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNE-FGFKK 414 (783)
Q Consensus 352 -lr~~~~g~~fR~E~~g~~~GL~-R-~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~-lGl~~ 414 (783)
-++.-..+|.|-.-- ..-|.. | .--|.|.+-|+|+.++...-+-.|.+..+.+++++ |||+.
T Consensus 116 ~~~~~~sQ~CiR~nDl-dnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~ 181 (900)
T PRK13902 116 ANPLVISQPCIRLNDI-DNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDP 181 (900)
T ss_pred CCCceecccccchhhh-hhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCH
Confidence 255666678885321 111211 1 12388999999998876443336789999999988 99974
No 195
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=59.20 E-value=14 Score=45.97 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccch--H-HHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHh-cccccCC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDL--S-LWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYN-SNFHSYR 348 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~--~-l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~-~~~~s~~ 348 (783)
...|.+.+.+.|++.|...|..-.+.+. + |+-. +-.|+.| -.+|- ...
T Consensus 58 ~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft-------~Agm~~F-----------------kp~f~~G~~---- 109 (902)
T TIGR03683 58 LDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLT-------IASIADF-----------------QPWVTSGLV---- 109 (902)
T ss_pred HHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEe-------ecchhhh-----------------hHhhcCCCC----
Confidence 4678888899999999999987777762 1 2110 1112221 11111 111
Q ss_pred CCC-ceEEEecceeecCCCCCCCCcc-c-ceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEE
Q psy9574 349 DLP-LRFGEFGQCHRNESSGSLHGMM-R-TRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKI 417 (783)
Q Consensus 349 ~LP-lr~~~~g~~fR~E~~g~~~GL~-R-~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i 417 (783)
+-| -++.-..+|.|-.-- ..-|.. | .--|.|.+-|+|+.++...-+-.|.+..+.++++.|||+.-+|
T Consensus 110 ~pp~~r~~~sQkCiR~nDl-dnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~~~~i 180 (902)
T TIGR03683 110 PPPANPLVISQPCIRLNDI-DNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGIDPEEI 180 (902)
T ss_pred CCCCCCceecccccccccc-ccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCCHHHe
Confidence 111 245666677775321 111211 1 1238899999999887533333678999999997799975444
No 196
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=57.00 E-value=91 Score=32.04 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=52.0
Q ss_pred ceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeec
Q psy9574 375 TRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEF 454 (783)
Q Consensus 375 ~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~ 454 (783)
+-++...+++++.+.+-..+|+ +.++.+..++ |. ..+++-+ |+...|....++. +.|+..||+|++.
T Consensus 43 lL~~~~~~aei~nSa~~tLeeI---i~~m~~a~~~-Gk--~VvRLhS------GDpsiYgA~~EQm-~~L~~~gI~yevv 109 (254)
T COG2875 43 LLEYCRPDAEIVNSASLTLEEI---IDLMVDAVRE-GK--DVVRLHS------GDPSIYGALAEQM-RELEALGIPYEVV 109 (254)
T ss_pred HHhhcCCCCEEEecCcCCHHHH---HHHHHHHHHc-CC--eEEEeec------CChhHHHHHHHHH-HHHHHcCCCeEEe
Confidence 3456677888888876655555 4444544443 43 4566655 4455555333333 4688999999999
Q ss_pred CCCCCccc----ccEEEEeec
Q psy9574 455 PGEGAFYG----PKIEYHLKD 471 (783)
Q Consensus 455 ~g~~~y~g----~~~e~~~~d 471 (783)
||-..|.. ...|..++.
T Consensus 110 PGVss~~AAAA~L~~ELT~P~ 130 (254)
T COG2875 110 PGVSSFAAAAAALGIELTVPG 130 (254)
T ss_pred CCchHHHHHHHHhCceeecCC
Confidence 99765543 345665543
No 197
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=56.12 E-value=47 Score=31.62 Aligned_cols=58 Identities=24% Similarity=0.352 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHCCCC--eEEEcCcc-cCcEEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy9574 71 IRHSTAHLLAYAVKNLFPDS--QIAIGPVI-ENGFYYDFLYKRSFTKEDLILIEKKMIELSQ 129 (783)
Q Consensus 71 y~hS~~~lL~~A~~~l~p~~--~~~~~~s~-~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~ 129 (783)
--||+.||++.-+++-..+. -+.++|.- ..|||.-+- +.+=+.+-++.+++-|+++.+
T Consensus 52 ~iHTlEHL~A~~iRnh~~g~~~iID~SPMGCrTGFYm~l~-G~~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 52 GIHTLEHLLAGFIRNHLNGNVEIIDISPMGCRTGFYMILI-GTPTSQDIADVLEATMKDVLK 112 (161)
T ss_pred chhhHHHHHHHHHHhcccCceeEEEecCcccccceEEEEE-CCCCHHHHHHHHHHHHHHHHc
Confidence 46999999999999877442 34444432 378998886 444455556678888888876
No 198
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=53.33 E-value=84 Score=33.50 Aligned_cols=75 Identities=11% Similarity=0.156 Sum_probs=47.5
Q ss_pred eEEEEcCCeEEEe-cCCCCHHHHHHhhcccc-------------cCceEEEEECCEE---eecccccCCCceEEEeecCC
Q psy9574 2 ISIQISNELKLQF-SKPITVLDVASHISVNL-------------AKTAIVGKLNGVL---VDLSYVIDHDVNLIIITEKD 64 (783)
Q Consensus 2 i~i~~~~g~~~~~-~~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~---~~L~~~i~~~~~i~~v~~~s 64 (783)
++|++ ||+..++ ++|+|+.|.|++.+... .-.+-.+.|+|.- -.=.+|+.++..|. .+|
T Consensus 69 ~~I~I-DGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~---T~S 144 (297)
T PTZ00305 69 AIMFV-NKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII---TDS 144 (297)
T ss_pred eEEEE-CCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE---eCC
Confidence 56777 9999999 99999999998865321 1234567777742 23455666666554 255
Q ss_pred hhhHHHHHHHHHHHHH
Q psy9574 65 NIGLNIIRHSTAHLLA 80 (783)
Q Consensus 65 ~~g~~~y~hS~~~lL~ 80 (783)
+.-...=+..+.+||+
T Consensus 145 e~v~~~Rk~vLElLLs 160 (297)
T PTZ00305 145 RLVRDAREGNVELILI 160 (297)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5555554445555544
No 199
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=51.59 E-value=2.9e+02 Score=28.48 Aligned_cols=107 Identities=17% Similarity=0.255 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHcCCeEeecCcccchH----HHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 275 EIKKYMRKIYKYNGYKEIKTPQMLDLS----LWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 275 ~l~~~~~~~~~~~G~~ev~tP~l~~~~----l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
.|.+.+.+.|++.|...+....|.+.+ +|..+|. . +...+|.... .-
T Consensus 3 eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM--------~-----------------~Fkp~f~G~~----~p 53 (232)
T cd00673 3 EIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGM--------N-----------------QFKPIFLGEV----PP 53 (232)
T ss_pred HHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccch--------h-----------------hhhHHhcCCC----CC
Confidence 567788888999999999888777543 3322332 1 1112222211 11
Q ss_pred C-ceEEEecceeecCCC---C--CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhh-cCCeeEEEEe
Q psy9574 351 P-LRFGEFGQCHRNESS---G--SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNE-FGFKKIKIKL 419 (783)
Q Consensus 351 P-lr~~~~g~~fR~E~~---g--~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~-lGl~~~~i~l 419 (783)
| -|+....+|.|---- | +++. -=|.|.+-++|+.- -. .+.+..+.+++++ |||+.-++-+
T Consensus 54 ~~~r~~~~QkCiR~~DienVG~t~rHh----TfFEMLGNfSFgdY--FK---~eaI~~awe~LT~~l~l~~~rl~v 120 (232)
T cd00673 54 PANRLVNSQKCIRAGDIDNVGKTGRHH----TFFEMLGNFSFGDY--FK---EEAIAFAWELLTEVLGLPKDRLYV 120 (232)
T ss_pred CCCceeeeeeceecCChhhccccccch----hhhhhhcccchhhh--hH---HHHHHHHHHHHHhhcCCCccceEE
Confidence 2 366777788885211 1 2332 23888888899852 11 4558888888875 8987544444
No 200
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=49.64 E-value=95 Score=32.37 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=34.1
Q ss_pred cccCCCCCceEEEecceeecCCCC--CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 344 FHSYRDLPLRFGEFGQCHRNESSG--SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 344 ~~s~~~LPlr~~~~g~~fR~E~~g--~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
+++..+-|.+.+|+.+|.|--.+. ... -|+..++|.-+-+==+|+.. .+++.+.++.+|++
T Consensus 38 lr~Lgpepw~vaYVqPsrRP~DGRYGeNP--NRLq~y~QfQVilKPsP~ni-------q~lYL~SL~~lGId 100 (284)
T PF02091_consen 38 LRALGPEPWNVAYVQPSRRPTDGRYGENP--NRLQHYYQFQVILKPSPDNI-------QELYLESLEALGID 100 (284)
T ss_dssp TTTSSSS-EEEEEEEEEE-GGG--TTTSS--S--SEEEEEEEEEES--TTH-------HHHHHHHHHHCT--
T ss_pred HHhcCCCCccccccccCCCCCCCccCCCc--hHhhhhheeEEEEcCCCccH-------HHHHHHHHHHhCCC
Confidence 345567899999999999965421 111 27888888654433333333 44667888999985
No 201
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=42.12 E-value=88 Score=37.95 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=49.3
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccc-------------cCceEEEEECCE---Ee-ecccccCCCceEEEeecC
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNL-------------AKTAIVGKLNGV---LV-DLSYVIDHDVNLIIITEK 63 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~---~~-~L~~~i~~~~~i~~v~~~ 63 (783)
|++|++ ||+..++++|+|+.|.++..+... .-...++.|+|. ++ .-..|+.++..|. .+
T Consensus 1 m~~~~I-dg~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~---T~ 76 (687)
T PRK09130 1 MVKLKV-DGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIF---TN 76 (687)
T ss_pred CeEEEE-CCEEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEE---eC
Confidence 789998 999999999999999998855322 113345666653 22 3344555555433 35
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy9574 64 DNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 64 s~~g~~~y~hS~~~lL~ 80 (783)
|+.-.+.=+-.+.+||.
T Consensus 77 s~~v~~~r~~~le~ll~ 93 (687)
T PRK09130 77 TPMVKKAREGVMEFLLI 93 (687)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 66666655566666665
No 202
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=40.18 E-value=99 Score=32.26 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=38.4
Q ss_pred ccCCCCCceEEEecceeecCCCCCCCCc--ccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 345 HSYRDLPLRFGEFGQCHRNESSGSLHGM--MRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 345 ~s~~~LPlr~~~~g~~fR~E~~g~~~GL--~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++...-|.+.+|+.+|.|--.+ +-|- -|+..++|.-+-+==+|+.. .+++.+.++.+|++
T Consensus 41 ralgpepw~vAYVqPsRRP~DG--RYGeNPNRLq~yyQfQVilKPsP~ni-------QelYL~SL~~lGid 102 (293)
T TIGR00388 41 RSLGPEPWAVAYVEPSRRPTDG--RYGENPNRLQHYYQFQVVIKPSPDNI-------QELYLDSLRALGID 102 (293)
T ss_pred HhcCCCcceeccccCCCCCCCC--CCCCCchhhhheeeeEEEECCCCccH-------HHHHHHHHHHhCCC
Confidence 3445679999999999986442 1111 17777888644333333333 44567888999985
No 203
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=39.08 E-value=1e+02 Score=29.59 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=25.4
Q ss_pred ceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcc
Q psy9574 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGN 597 (783)
Q Consensus 539 ~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~ 597 (783)
.++..+..++.. +...+..+.. ...+.+..|. +..+.+++ ...++|..++|++
T Consensus 95 ~~vi~i~~d~~~-~~~~~~~~~~-~~~~~~~~d~-~~~~~~~~---~v~~~P~~~lid~ 147 (173)
T PRK03147 95 VEIIAVNVDETE-LAVKNFVNRY-GLTFPVAIDK-GRQVIDAY---GVGPLPTTFLIDK 147 (173)
T ss_pred eEEEEEEcCCCH-HHHHHHHHHh-CCCceEEECC-cchHHHHc---CCCCcCeEEEECC
Confidence 455555554332 2222222222 2244544443 34444443 3467888888865
No 204
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=39.07 E-value=93 Score=29.96 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCC---CeEEEcCcc-cCcEEEEEecCCCCCHHH-HHHHHHHHHHHHhcC
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPD---SQIAIGPVI-ENGFYYDFLYKRSFTKED-LILIEKKMIELSQKN 131 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~---~~~~~~~s~-~~g~y~d~~~~~~~t~e~-l~~Ie~~m~~iI~~~ 131 (783)
..--||+.||++.-+++-..+ ..+.+||.= ..|||.-+.. ..+.++ +..+++-|+.++..+
T Consensus 49 ~~~lHTlEHL~A~~lRn~~~~~~~~iI~~gPMGCrTGFYli~~g--~~~~~~i~~l~~~~l~~i~~~~ 114 (157)
T PF02664_consen 49 TAALHTLEHLFATYLRNHLDGDKDKIIDFGPMGCRTGFYLILWG--DPSSEDIADLLKETLEFILEFE 114 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE-TTSSEEEEEEES--S--HHHHHHHHHHHHHHHHT-S
T ss_pred CcchhHHHHHHHHHHhcCccCCCCeEEEecCcccccccEEEEeC--CCCHHHHHHHHHHHHHHHHhcC
Confidence 446799999999999997653 355556543 3799987763 355555 567788888887755
No 205
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=39.05 E-value=1.1e+02 Score=37.69 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=38.9
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccc-------------cCceEEEEECCEE---eecccccCCCceEE
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNL-------------AKTAIVGKLNGVL---VDLSYVIDHDVNLI 58 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~---~~L~~~i~~~~~i~ 58 (783)
||+|++ ||+..++++|+|+.+.+...+... .-....+.|||.. ..-.+|+.++-.|.
T Consensus 1 m~~~~i-dg~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~ 73 (776)
T PRK09129 1 MVEIEI-DGKKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVF 73 (776)
T ss_pred CeEEEE-CCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEE
Confidence 889998 999999999999999998855322 1134456677632 24455666655443
No 206
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=38.87 E-value=1.3e+02 Score=29.06 Aligned_cols=79 Identities=10% Similarity=0.223 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEEecCcc---------hHHHHHHHHHHhHhCCCeEEEECCCc-----cHHHHHHH
Q psy9574 518 ERFIAILVENYSGAMPLWLAPIQVMILNISKE---------QIEYAKKVFNFLKSKKFRVEVDLRNE-----KIAYKIRL 583 (783)
Q Consensus 518 eRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~---------~~~~a~~i~~~Lr~~gi~v~~d~~~~-----~l~~k~~~ 583 (783)
+.++..+++.|..+++.. +++.+..++-... ...++..+...|....+.|.+|.+++ .+..++..
T Consensus 13 ~~~~~~~i~~Y~kRl~~~-~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~ 91 (157)
T PRK00103 13 PKWLKDGIAEYLKRFPRY-LKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIALDERGKQLSSEEFAQELER 91 (157)
T ss_pred cHHHHHHHHHHHHhcCcc-CCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHH
Confidence 556666777777766653 5666666653321 24566677777777778889998764 48888999
Q ss_pred hhcCCC-CEEEEEcc
Q psy9574 584 HSLEKL-PYIIIVGN 597 (783)
Q Consensus 584 A~~~gi-p~~iivG~ 597 (783)
+...|. ..+++||.
T Consensus 92 ~~~~g~~~i~F~IGG 106 (157)
T PRK00103 92 WRDDGRSDVAFVIGG 106 (157)
T ss_pred HHhcCCccEEEEEcC
Confidence 888886 78889985
No 207
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=38.75 E-value=30 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhc
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHIS 28 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~ 28 (783)
+|+|++ ||+..++.+|.|+.+.+...+
T Consensus 3 ~v~i~i-dG~~v~~~~G~til~al~~~g 29 (82)
T PF13510_consen 3 MVTITI-DGKPVEVPPGETILEALLAAG 29 (82)
T ss_dssp EEEEEE-TTEEEEEEET-BHHHHHHHTT
T ss_pred EEEEEE-CCEEEEEcCCCHHHHHHHHCC
Confidence 478888 999999999999999998755
No 208
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=37.58 E-value=1.7e+02 Score=30.29 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=47.6
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccC-------------ceEEEEECCEE---eecccccCCCceEEEeecCC
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAK-------------TAIVGKLNGVL---VDLSYVIDHDVNLIIITEKD 64 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~-------------~~v~a~vn~~~---~~L~~~i~~~~~i~~v~~~s 64 (783)
||+|++ ||+.+.+++|.|+.+.+...+...+. ..-.+.|||.. ..=..++.++-.|+. +
T Consensus 3 ~v~i~i-dg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t---~- 77 (234)
T PRK07569 3 VKTLTI-DDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQT---N- 77 (234)
T ss_pred eEEEEE-CCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEE---C-
Confidence 467887 99999999999999999875422211 23456788742 244556666655443 2
Q ss_pred hhhHHHHHHHHHHHHH
Q psy9574 65 NIGLNIIRHSTAHLLA 80 (783)
Q Consensus 65 ~~g~~~y~hS~~~lL~ 80 (783)
.+...-+++....+|.
T Consensus 78 ~~~~~~~rk~~l~~ll 93 (234)
T PRK07569 78 TPRLQEYRRMIVELLF 93 (234)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3355666666555444
No 209
>PLN03194 putative disease resistance protein; Provisional
Probab=34.87 E-value=1.3e+02 Score=29.93 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCCceEEEEecCcch-HHHHHHHHHHhHhCCCeEEEECC----CccHHHHHHHh
Q psy9574 536 LAPIQVMILNISKEQ-IEYAKKVFNFLKSKKFRVEVDLR----NEKIAYKIRLH 584 (783)
Q Consensus 536 lap~qv~Vi~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~~k~~~A 584 (783)
-.++||.|---+++. ...+..++..|+.+||+|-+|+. +.++...+..|
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~A 77 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSA 77 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHH
Confidence 356899887666553 46788999999999999999974 34555555544
No 210
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=32.47 E-value=1.1e+02 Score=31.15 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEE
Q psy9574 536 LAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYI 592 (783)
Q Consensus 536 lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~ 592 (783)
..|-||.++|-+. .....-..+.+.|.+.|++|.+... .-..++..|...|+|++
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~I 149 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRI 149 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEE
Confidence 4688999999762 1245566788899999999998764 34578899999999987
No 211
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=31.86 E-value=2.3e+02 Score=35.07 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=38.5
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccc-------------cCceEEEEECCEE-eecccccCCCceE
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNL-------------AKTAIVGKLNGVL-VDLSYVIDHDVNL 57 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~-~~L~~~i~~~~~i 57 (783)
||+|++ ||+..++++|+|+.+.+...+... .-....+.|||+. ..-..++.++..|
T Consensus 1 mv~i~I-dG~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V 70 (819)
T PRK08493 1 MITITI-NGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNI 70 (819)
T ss_pred CeEEEE-CCEEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEE
Confidence 789998 999999999999999998755221 1123666888874 2334455544443
No 212
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=29.69 E-value=2.2e+02 Score=27.57 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHCCC--CeEEEcCcc-cCcEEEEEecCCCCCHHHHH-HHHHHHHHHH
Q psy9574 71 IRHSTAHLLAYAVKNLFPD--SQIAIGPVI-ENGFYYDFLYKRSFTKEDLI-LIEKKMIELS 128 (783)
Q Consensus 71 y~hS~~~lL~~A~~~l~p~--~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~-~Ie~~m~~iI 128 (783)
--||+.||++.-+++-..+ ..+.+||.= ..|||.-+- + ..+.+++. .+++-++.+.
T Consensus 52 alHTlEHL~At~lRn~~~~~~~iI~~sPMGCrTGFYli~~-g-~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 52 GIHTLEHLLAGFLRNHLDGGVEIIDISPMGCRTGFYLILI-G-TPDEEDVADALKATLEDVL 111 (158)
T ss_pred chhHHHHHHHHHHhhCccCCceEEEECCCccccccEEEEe-C-CCCHHHHHHHHHHHHHHHH
Confidence 4699999999999985422 256666643 379998775 3 35555554 5566666554
No 213
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=26.35 E-value=68 Score=27.38 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred CCCHHHHHHhhcccc-------c-CceEEEEECCEEeecccccCCCceEEEee
Q psy9574 17 PITVLDVASHISVNL-------A-KTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 17 g~t~~~i~~~~~~~~-------~-~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
+.|+.++.+.+.... . ..++.+.+|..+.++++++.++++|-|+.
T Consensus 27 ~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 27 GATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred HHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccccccCCCCCEEEEeC
Confidence 667888877764322 2 35577888899999999999999998875
No 214
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=26.32 E-value=2.6e+02 Score=26.60 Aligned_cols=63 Identities=19% Similarity=0.459 Sum_probs=47.4
Q ss_pred CEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHH
Q psy9574 42 GVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIE 121 (783)
Q Consensus 42 ~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie 121 (783)
+.+++|..+.....+|.||+..|.+=.. -+.-+.+.+++.+|+.++. .||. .++++.++.|+
T Consensus 47 ~~~v~l~~~~~n~~~vvfVSa~S~~h~~-----~~~~~i~si~~~~P~~k~i---------lY~L----gL~~~~i~~L~ 108 (142)
T PF07801_consen 47 GPFVDLSSSSKNSSDVVFVSATSDNHFN-----ESMKSISSIRKFYPNHKII---------LYDL----GLSEEQIKKLK 108 (142)
T ss_pred CcceecccccccCCccEEEEEecchHHH-----HHHHHHHHHHHHCCCCcEE---------EEeC----CCCHHHHHHHH
Confidence 5789999988889999999977765332 2334567889999987665 3454 37899998888
Q ss_pred H
Q psy9574 122 K 122 (783)
Q Consensus 122 ~ 122 (783)
+
T Consensus 109 ~ 109 (142)
T PF07801_consen 109 K 109 (142)
T ss_pred h
Confidence 6
No 215
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=25.91 E-value=2.4e+02 Score=34.90 Aligned_cols=77 Identities=10% Similarity=0.184 Sum_probs=47.7
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhccc---cc----------CceEEEEECCEEe---ecccccCCCceEEEeec-C
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVN---LA----------KTAIVGKLNGVLV---DLSYVIDHDVNLIIITE-K 63 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~---~~----------~~~v~a~vn~~~~---~L~~~i~~~~~i~~v~~-~ 63 (783)
||+|++ ||+..++++|+|+.+.++..+.. +. -....+.|+|... .-.+|+.++-.|+ +. +
T Consensus 4 ~v~~~i-dg~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~--t~~~ 80 (797)
T PRK07860 4 LVTLTI-DGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVK--TQLT 80 (797)
T ss_pred eEEEEE-CCEEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEE--eCCC
Confidence 688898 99999999999999999875521 11 1235567777532 3345665554443 32 3
Q ss_pred ChhhHHHHHHHHHHHHH
Q psy9574 64 DNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 64 s~~g~~~y~hS~~~lL~ 80 (783)
|+.-.+.=+..+.+||.
T Consensus 81 s~~v~~~r~~~le~ll~ 97 (797)
T PRK07860 81 SPVADKAQHGVMELLLI 97 (797)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 55544444445555554
No 216
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=24.82 E-value=3.1e+02 Score=26.35 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc---c------hHHHHHHHHHHhHhCCCeEEEECCCc-----cHHHHHH
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK---E------QIEYAKKVFNFLKSKKFRVEVDLRNE-----KIAYKIR 582 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~---~------~~~~a~~i~~~Lr~~gi~v~~d~~~~-----~l~~k~~ 582 (783)
-+.++..+++.|..+++.. ++.++.-++-.. . ....+..+...+. ..+.|.+|.+++ .+.+++.
T Consensus 11 k~~~~~~~i~~Y~kRl~~~-~~~ei~el~~~~~~~~~~~~~~~~~E~~~il~~~~-~~~~i~LDe~Gk~~sS~~fA~~l~ 88 (153)
T TIGR00246 11 KPKWVKTGFEEYTRRFPKD-APFELIEIPAGKRGKNADIKRILDKEGDRILAAIG-KAHVVTLDIPGKPWTTPQLADTLE 88 (153)
T ss_pred CcHHHHHHHHHHHHhcCCc-CCeEEEEeCCccccccccHHHHHHHHHHHHHHhCC-CCeEEEEcCCCCcCCHHHHHHHHH
Confidence 3556667778787777763 677777776432 1 1334556666676 478888898754 4888999
Q ss_pred HhhcCCCCEEEEEcc
Q psy9574 583 LHSLEKLPYIIIVGN 597 (783)
Q Consensus 583 ~A~~~gip~~iivG~ 597 (783)
.+...|-..+++||.
T Consensus 89 ~~~~~g~~i~FvIGG 103 (153)
T TIGR00246 89 KWKTDGRDVTLLIGG 103 (153)
T ss_pred HHhccCCeEEEEEcC
Confidence 888888668889985
No 217
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=24.64 E-value=2.4e+02 Score=24.93 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=34.4
Q ss_pred CCCCHHHHHHhhcccc-------------cCceEEEEECCEEeec----ccccCCCceEEEeec
Q psy9574 16 KPITVLDVASHISVNL-------------AKTAIVGKLNGVLVDL----SYVIDHDVNLIIITE 62 (783)
Q Consensus 16 ~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~~ 62 (783)
.+.|+.++...+..++ -.|=+.+.||+.-|+| ++++..+..|.|+..
T Consensus 29 ~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiST 92 (96)
T PF09138_consen 29 EPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFIST 92 (96)
T ss_dssp SC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEET
T ss_pred CCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEcc
Confidence 5678999987766432 3466899999999988 689999999999974
No 218
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=22.99 E-value=92 Score=30.05 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc---------chHHHHHHHHHHhHhCCCeEEEECCCc-----cHHHHHH
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK---------EQIEYAKKVFNFLKSKKFRVEVDLRNE-----KIAYKIR 582 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~---------~~~~~a~~i~~~Lr~~gi~v~~d~~~~-----~l~~k~~ 582 (783)
-+.++..+++.|..+++.. +++++.-++-.. .....+..+...+......|.+|.+++ .+.+++.
T Consensus 12 k~~~~~~~~~eY~kRl~~~-~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~ 90 (155)
T PF02590_consen 12 KEKFLKELIEEYLKRLSRY-AKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLSSEEFAKKLE 90 (155)
T ss_dssp -SHHHHHHHHHHHHHHCTT-SEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCcc-CceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCChHHHHHHHH
Confidence 3556777777776655543 445665555443 123445566666667788899998764 4788999
Q ss_pred HhhcCCC-CEEEEEcc
Q psy9574 583 LHSLEKL-PYIIIVGN 597 (783)
Q Consensus 583 ~A~~~gi-p~~iivG~ 597 (783)
.+...|. ..+++||.
T Consensus 91 ~~~~~g~~~i~F~IGG 106 (155)
T PF02590_consen 91 RWMNQGKSDIVFIIGG 106 (155)
T ss_dssp HHHHTTS-EEEEEE-B
T ss_pred HHHhcCCceEEEEEec
Confidence 9999998 78888884
No 219
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=22.26 E-value=4.1e+02 Score=32.30 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=39.2
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccc-------------cCceEEEEECCEEeec-ccccCCCceEE
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNL-------------AKTAIVGKLNGVLVDL-SYVIDHDVNLI 58 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~~~L-~~~i~~~~~i~ 58 (783)
|+++++ ||+.+.+++|+|+.+.+..-+... .-....+.+||++..- .+++.++..|.
T Consensus 5 ~i~vti-dg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~ 75 (978)
T COG3383 5 MITVTI-DGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVR 75 (978)
T ss_pred eEEEEE-CCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEe
Confidence 578888 999999999999999998744221 2234567789986544 34555555443
No 220
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=22.22 E-value=2.7e+02 Score=29.01 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=38.7
Q ss_pred ccCCCCCceEEEecceeecCCCCCCCCc--ccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 345 HSYRDLPLRFGEFGQCHRNESSGSLHGM--MRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 345 ~s~~~LPlr~~~~g~~fR~E~~g~~~GL--~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++...-|.+.+|+.+|.|--.+ +-|- -|+..++|.-+ +..|++. .+.+++.+.++.+|++
T Consensus 40 r~Lgpepw~vAYVqPsrRP~DG--RYGeNPNRLq~y~QfQV--iiKPsP~-----niQelYL~SL~~lGid 101 (279)
T cd00733 40 RALGPEPWNVAYVEPSRRPTDG--RYGENPNRLQHYYQFQV--IIKPSPD-----NIQELYLESLEALGIN 101 (279)
T ss_pred HhcCCCcceeccccCCCCCCCC--CcCCCchhhhhheeeEE--EECCCCc-----cHHHHHHHHHHHhCCC
Confidence 3445679999999999996542 2221 27777777644 4444331 1244567888999986
No 221
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=20.75 E-value=2.8e+02 Score=28.67 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=38.8
Q ss_pred ccCCCCCceEEEecceeecCCCC--CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 345 HSYRDLPLRFGEFGQCHRNESSG--SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 345 ~s~~~LPlr~~~~g~~fR~E~~g--~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++..+-|.+.+|+.++=|--.+. ..-. |+..++|.-+-+=-+|+.. .+++.+.++.|||+
T Consensus 45 ralGpePw~aAYVqPSRRP~DGRYGenPN--Rlq~yyQfQVilKPsP~Ni-------QeLYL~SL~~lGid 106 (298)
T COG0752 45 RALGPEPWNAAYVQPSRRPTDGRYGENPN--RLQHYYQFQVIIKPSPDNI-------QELYLGSLEALGID 106 (298)
T ss_pred HhcCCCccceeeeccCCCCCCCCCCCCch--hhhhheeEEEEecCCCccH-------HHHHHHHHHHcCCC
Confidence 45567799999999987753321 1111 7777777655544444443 34567888999986
No 222
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.59 E-value=4.7e+02 Score=31.51 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=45.6
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccc---c----------CceEEEEECCEE---eecccccCCCceEEEeecCC
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNL---A----------KTAIVGKLNGVL---VDLSYVIDHDVNLIIITEKD 64 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~---~----------~~~v~a~vn~~~---~~L~~~i~~~~~i~~v~~~s 64 (783)
||+|++ ||+...+++|.|+.+.+...+... . -..-.+.|||.. ..-.+++.++..|+- ++
T Consensus 3 ~v~~~i-dg~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm~v~t---~~ 78 (652)
T PRK12814 3 TISLTI-NGRSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGMVIET---EN 78 (652)
T ss_pred eEEEEE-CCEEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCCEEEe---Cc
Confidence 378888 999999999999999998754221 1 123455778752 344567777766655 33
Q ss_pred hhhHHHHHHHHHH
Q psy9574 65 NIGLNIIRHSTAH 77 (783)
Q Consensus 65 ~~g~~~y~hS~~~ 77 (783)
+ -..-+|+++.-
T Consensus 79 ~-~~~~~r~~~le 90 (652)
T PRK12814 79 A-ELHAMRRQSLE 90 (652)
T ss_pred H-HHHHHHHHHHH
Confidence 3 33445544433
No 223
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=20.21 E-value=1.9e+02 Score=25.30 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=35.0
Q ss_pred CCCCHHHHHHhhcccc-------------cCceEEEEECCEEe----ecccccCCCceEEEee
Q psy9574 16 KPITVLDVASHISVNL-------------AKTAIVGKLNGVLV----DLSYVIDHDVNLIIIT 61 (783)
Q Consensus 16 ~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~~----~L~~~i~~~~~i~~v~ 61 (783)
.+.|+.++.+.+...+ -.+-|...||+.-+ .+.+++..+..|.|+.
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 5789999987765432 13457889999876 4679999999999875
No 224
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=20.12 E-value=2.7e+02 Score=29.09 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=38.6
Q ss_pred ccCCCCCceEEEecceeecCCCCCCCCc--ccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 345 HSYRDLPLRFGEFGQCHRNESSGSLHGM--MRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 345 ~s~~~LPlr~~~~g~~fR~E~~g~~~GL--~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++..+-|.+.+|+.+|.|--.+ +-|- -|+..++|.-+ +..|++. .+.+++.+.++.+|++
T Consensus 44 r~Lgpepw~vaYvqPsRRP~DG--RYGeNPNRLq~y~QfQV--ilKPsP~-----niQelYL~SL~~lGid 105 (283)
T PRK09348 44 RALGPEPWNAAYVQPSRRPTDG--RYGENPNRLQHYYQFQV--ILKPSPD-----NIQELYLGSLEALGID 105 (283)
T ss_pred HhcCCCccccccccCCCCCCCC--CcCCCchhhhhheeeEE--EEcCCCc-----cHHHHHHHHHHHhCCC
Confidence 3445779999999999996542 1111 17777777644 4444331 1244667888999985
No 225
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=20.12 E-value=1.2e+02 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.8
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcc
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISV 29 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~ 29 (783)
++|..+||++.+|..++|..||..++..
T Consensus 18 vkvv~~~G~v~~~~~pv~a~evm~~~P~ 45 (181)
T PF14009_consen 18 VKVVHPDGKVEEFKRPVTAAEVMLENPG 45 (181)
T ss_pred EEEEcCCCcEEEeCCCcCHHHHHHHCCC
Confidence 5777899999999999999999988753
No 226
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.01 E-value=1.8e+02 Score=26.29 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=22.1
Q ss_pred HHHHHhHhCCC--eEEEECCCccHHHHHHHhhcCCCCEEEEEcc
Q psy9574 556 KVFNFLKSKKF--RVEVDLRNEKIAYKIRLHSLEKLPYIIIVGN 597 (783)
Q Consensus 556 ~i~~~Lr~~gi--~v~~d~~~~~l~~k~~~A~~~gip~~iivG~ 597 (783)
.+.+.+.+.|+ .+..|. +..+.+++ ...++|..++|+.
T Consensus 75 ~~~~~~~~~~~~~p~~~D~-~~~~~~~~---~v~~~P~~~vid~ 114 (126)
T cd03012 75 NVKSAVLRYGITYPVANDN-DYATWRAY---GNQYWPALYLIDP 114 (126)
T ss_pred HHHHHHHHcCCCCCEEECC-chHHHHHh---CCCcCCeEEEECC
Confidence 44455555554 444443 34555444 3468899999975
Done!