Query psy9574
Match_columns 783
No_of_seqs 534 out of 4240
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:08:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf6_A THRRS, threonyl-tRNA sy 100.0 7E-133 2E-137 1169.6 63.9 631 1-654 1-632 (642)
2 1nyr_A Threonyl-tRNA synthetas 100.0 4E-128 1E-132 1136.2 56.1 629 1-654 3-639 (645)
3 3uh0_A Threonyl-tRNA synthetas 100.0 3.4E-81 1.2E-85 704.0 38.8 394 238-654 32-456 (460)
4 1evl_A Threonyl-tRNA synthetas 100.0 8.7E-74 3E-78 639.2 40.3 390 241-653 1-390 (401)
5 3a32_A Probable threonyl-tRNA 100.0 1.9E-65 6.5E-70 581.6 30.5 378 228-610 9-418 (471)
6 3ial_A Prolyl-tRNA synthetase; 100.0 8.9E-63 3E-67 555.5 29.4 344 245-648 30-400 (518)
7 4hvc_A Bifunctional glutamate/ 100.0 1E-61 3.6E-66 548.6 33.4 366 218-654 21-412 (519)
8 1hc7_A Prolyl-tRNA synthetase; 100.0 1.1E-58 3.9E-63 523.8 35.6 350 241-653 16-384 (477)
9 1nj1_A PROR, proline-tRNA synt 100.0 1.2E-58 4E-63 526.9 28.1 352 241-653 42-411 (501)
10 1nj8_A Proline-tRNA synthetase 100.0 9.6E-58 3.3E-62 514.9 33.5 353 240-653 8-378 (459)
11 2j3l_A Prolyl-tRNA synthetase; 100.0 2E-57 6.7E-62 529.6 31.4 384 236-651 16-562 (572)
12 2i4l_A Proline-tRNA ligase; al 100.0 4.6E-57 1.6E-61 511.0 22.0 361 236-609 36-439 (458)
13 4e51_A Histidine--tRNA ligase; 100.0 1E-53 3.6E-58 483.5 31.1 352 258-654 34-458 (467)
14 1tke_A Threonyl-tRNA synthetas 100.0 8.9E-54 3.1E-58 438.6 22.9 223 1-223 1-224 (224)
15 1ati_A Glycyl-tRNA synthetase; 100.0 1.2E-53 4.3E-58 486.0 26.4 372 242-652 7-501 (505)
16 1qe0_A Histidyl-tRNA synthetas 100.0 2.1E-52 7.3E-57 470.2 26.1 351 257-651 3-419 (420)
17 2zt5_A Glycyl-tRNA synthetase; 100.0 3E-52 1E-56 487.6 20.8 385 243-654 70-656 (693)
18 1h4v_B Histidyl-tRNA synthetas 100.0 3.9E-50 1.3E-54 451.7 33.0 351 257-652 4-418 (421)
19 1htt_A Histidyl-tRNA synthetas 100.0 2.6E-50 9E-55 453.4 30.1 351 257-652 5-420 (423)
20 3ikl_A DNA polymerase subunit 100.0 1.6E-50 5.4E-55 446.1 22.5 324 259-655 92-448 (459)
21 1g5h_A Mitochondrial DNA polym 100.0 3.5E-51 1.2E-55 458.4 13.0 370 216-653 8-436 (454)
22 1wu7_A Histidyl-tRNA synthetas 100.0 1.5E-48 5E-53 440.1 31.2 346 257-653 7-424 (434)
23 4g85_A Histidine-tRNA ligase, 100.0 1.8E-48 6E-53 448.2 27.1 397 211-654 18-513 (517)
24 3net_A Histidyl-tRNA synthetas 100.0 3.7E-48 1.3E-52 438.6 27.6 346 258-653 14-463 (465)
25 3lc0_A Histidyl-tRNA synthetas 100.0 7.5E-47 2.6E-51 425.0 27.1 330 257-610 30-433 (456)
26 4g84_A Histidine--tRNA ligase, 100.0 2.7E-46 9.4E-51 425.9 28.7 364 242-654 3-460 (464)
27 2dq3_A Seryl-tRNA synthetase; 100.0 2.4E-46 8E-51 416.0 16.7 288 208-545 118-423 (425)
28 2dq0_A Seryl-tRNA synthetase; 100.0 3.4E-45 1.2E-49 408.6 17.7 267 238-540 157-438 (455)
29 3vbb_A Seryl-tRNA synthetase, 100.0 5E-45 1.7E-49 406.8 18.9 293 208-548 148-472 (522)
30 1wle_A Seryl-tRNA synthetase; 100.0 8.2E-45 2.8E-49 407.2 18.5 291 208-544 165-473 (501)
31 1ses_A Seryl-tRNA synthetase; 100.0 5.6E-45 1.9E-49 404.0 15.7 283 206-540 111-412 (421)
32 3lss_A Seryl-tRNA synthetase; 100.0 1.6E-44 5.5E-49 400.7 18.8 289 212-548 159-471 (484)
33 3err_A Fusion protein of micro 100.0 2.7E-43 9.2E-48 399.2 18.6 284 207-539 221-520 (536)
34 3qne_A Seryl-tRNA synthetase, 100.0 2.5E-43 8.7E-48 390.5 17.8 278 237-548 148-446 (485)
35 3od1_A ATP phosphoribosyltrans 100.0 4.5E-38 1.6E-42 347.9 26.4 311 257-600 11-394 (400)
36 2cja_A Seryl-tRNA synthetase; 100.0 3.4E-35 1.2E-39 330.4 13.0 264 244-539 206-511 (522)
37 1z7m_A ATP phosphoribosyltrans 100.0 1.2E-33 4.2E-38 306.9 21.1 246 257-527 23-337 (344)
38 3rac_A Histidine-tRNA ligase; 100.0 1.3E-32 4.6E-37 301.4 21.3 256 252-528 19-367 (373)
39 3mf2_A BLL0957 protein; aminoa 100.0 7E-31 2.4E-35 276.5 13.8 245 257-538 51-328 (346)
40 2ife_A Protein (translation in 100.0 1.2E-30 4E-35 225.5 8.6 97 686-782 2-99 (100)
41 1tig_A IF3-C, translation init 100.0 7.7E-30 2.6E-34 218.6 9.9 93 691-783 1-93 (94)
42 1i96_V Translation initiation 100.0 2.9E-29 9.9E-34 212.4 10.8 88 696-783 1-88 (89)
43 2crq_A Mitochondrial translati 100.0 7.1E-29 2.4E-33 219.6 9.3 97 686-783 4-103 (112)
44 1v4p_A Alanyl-tRNA synthetase; 99.9 3.4E-27 1.2E-31 228.0 13.1 130 66-202 2-137 (157)
45 1tif_A IF3-N, translation init 99.9 3.2E-26 1.1E-30 187.4 5.9 75 616-690 4-78 (78)
46 1usy_A ATP phosphoribosyltrans 99.9 4.5E-25 1.5E-29 232.4 8.4 203 274-520 4-273 (275)
47 2ztg_A Alanyl-tRNA synthetase; 99.8 4.5E-20 1.5E-24 213.4 17.2 142 53-202 580-724 (739)
48 3kew_A DHHA1 domain protein; s 99.8 1.5E-20 5.1E-25 192.9 11.5 149 41-202 65-216 (241)
49 2e1b_A PH0108, 216AA long hypo 99.8 2.5E-19 8.6E-24 181.0 13.2 125 50-202 76-203 (216)
50 2zze_A Alanyl-tRNA synthetase; 99.8 9E-19 3.1E-23 202.5 17.9 145 51-202 591-738 (752)
51 1v95_A Nuclear receptor coacti 99.7 2.1E-17 7.2E-22 150.3 9.0 96 536-654 6-105 (130)
52 3dsq_A Pyrrolysyl-tRNA synthet 99.7 3.6E-16 1.2E-20 164.9 15.2 139 271-418 71-210 (288)
53 1wwt_A Threonyl-tRNA synthetas 99.5 3.8E-15 1.3E-19 128.7 -0.0 76 1-76 11-87 (88)
54 3qtc_A Pyrrolysyl-tRNA synthet 99.4 3.7E-12 1.3E-16 135.0 14.3 132 273-417 79-212 (290)
55 1nnh_A Asparaginyl-tRNA synthe 99.0 1.5E-09 5.2E-14 114.7 12.6 110 267-389 12-125 (294)
56 2kmm_A Guanosine-3',5'-BIS(dip 99.0 1E-09 3.4E-14 90.9 7.1 65 2-66 3-67 (73)
57 1wyd_A Hypothetical aspartyl-t 98.7 5E-08 1.7E-12 108.1 13.5 101 269-389 133-234 (429)
58 1x54_A Asparaginyl-tRNA synthe 98.7 4.4E-08 1.5E-12 108.8 13.0 102 268-389 133-235 (434)
59 3hvz_A Uncharacterized protein 98.7 2.5E-08 8.5E-13 82.8 7.2 65 2-66 8-72 (78)
60 1eov_A ASPRS, aspartyl-tRNA sy 98.7 9.9E-08 3.4E-12 107.5 14.1 115 268-401 176-293 (487)
61 1n9w_A Aspartyl-tRNA synthetas 98.6 7.3E-08 2.5E-12 106.6 8.9 112 269-400 124-238 (422)
62 3a5y_A GENX, putative lysyl-tR 98.5 5.9E-07 2E-11 96.6 13.1 120 265-402 27-157 (345)
63 3a74_A Lysyl-tRNA synthetase; 98.5 7.4E-07 2.5E-11 100.3 13.2 113 269-400 173-288 (493)
64 1e1o_A Lysyl-tRNA synthetase, 98.3 2.4E-06 8.2E-11 96.3 12.7 114 269-401 182-298 (504)
65 3nem_A Aspartyl-tRNA synthetas 98.2 7.9E-06 2.7E-10 90.6 13.7 115 269-402 136-253 (438)
66 2xgt_A Asparaginyl-tRNA synthe 98.2 5.8E-06 2E-10 91.9 12.6 115 268-402 130-246 (435)
67 3l4g_A Phenylalanyl-tRNA synth 98.1 2.2E-05 7.6E-10 87.6 13.3 139 270-416 224-404 (508)
68 3bju_A Lysyl-tRNA synthetase; 98.0 3E-05 1E-09 87.8 13.1 114 269-401 175-291 (521)
69 1c0a_A Aspartyl tRNA synthetas 98.0 3.8E-05 1.3E-09 88.3 13.4 113 269-401 137-253 (585)
70 3m4p_A Ehasnrs, asparaginyl-tR 98.0 3.3E-05 1.1E-09 86.1 12.4 113 269-401 155-269 (456)
71 1l0w_A Aspartyl-tRNA synthetas 98.0 4.2E-05 1.4E-09 87.7 13.3 113 269-401 143-259 (580)
72 4ex5_A Lysine--tRNA ligase; st 98.0 4.6E-05 1.6E-09 86.0 13.1 114 269-401 203-319 (529)
73 4ah6_A Aspartate--tRNA ligase, 97.9 8.5E-05 2.9E-09 85.1 13.2 108 269-396 147-258 (617)
74 2du3_A O-phosphoseryl-tRNA syn 97.8 8.4E-05 2.9E-09 83.4 12.8 85 325-418 180-265 (534)
75 3i7f_A Aspartyl-tRNA synthetas 97.8 7E-05 2.4E-09 84.6 11.6 113 270-401 244-359 (548)
76 1b7y_A Phers, protein (phenyla 97.7 0.00044 1.5E-08 74.2 14.5 128 272-412 102-247 (350)
77 2rhq_A Phenylalanyl-tRNA synth 97.6 0.0004 1.4E-08 73.1 12.0 128 272-413 54-187 (294)
78 2du7_A O-phosphoseryl-tRNA syn 97.2 0.0013 4.5E-08 73.7 11.2 82 324-413 191-272 (549)
79 3pco_A Phenylalanyl-tRNA synth 97.1 0.0042 1.5E-07 65.8 13.5 123 271-410 107-234 (327)
80 2odr_B Phosphoseryl-tRNA synth 97.0 0.0027 9.2E-08 71.8 11.6 85 325-418 199-284 (648)
81 2odr_C Phosphoseryl-tRNA synth 97.0 0.0031 1E-07 71.7 11.9 85 325-418 199-284 (701)
82 2odr_A Phosphoseryl-tRNA synth 97.0 0.0028 9.5E-08 71.8 11.6 85 325-418 199-284 (665)
83 2odr_D Phosphoseryl-tRNA synth 97.0 0.0029 9.8E-08 71.8 11.6 85 325-418 199-284 (685)
84 3l4g_B Phenylalanyl-tRNA synth 96.8 0.012 3.9E-07 68.0 14.6 131 272-413 392-525 (589)
85 3ig2_A Phenylalanyl-tRNA synth 96.7 0.017 5.9E-07 57.6 13.1 135 273-413 6-154 (213)
86 1tyg_B YJBS; alpha beta barrel 96.5 0.0049 1.7E-07 52.0 6.3 59 1-62 20-83 (87)
87 3ica_A Phenylalanyl-tRNA synth 96.3 0.04 1.4E-06 54.9 12.9 138 273-413 6-154 (213)
88 1f0z_A THis protein; ubiquitin 96.1 0.0095 3.3E-07 47.5 6.1 58 2-62 1-62 (66)
89 1ryj_A Unknown; beta/alpha pro 96.0 0.012 3.9E-07 47.6 6.1 58 2-62 5-66 (70)
90 2kl0_A Putative thiamin biosyn 95.8 0.01 3.5E-07 48.4 5.1 57 2-62 1-61 (73)
91 2k5p_A THis protein, thiamine- 95.8 0.01 3.4E-07 49.1 5.0 59 2-62 1-65 (78)
92 2rhq_B Phenylalanyl-tRNA synth 95.8 0.035 1.2E-06 66.1 11.7 134 270-413 492-635 (795)
93 2cu3_A Unknown function protei 95.5 0.038 1.3E-06 43.6 7.3 55 4-62 2-60 (64)
94 1b7y_B Phers, protein (phenyla 94.9 0.057 1.9E-06 64.1 9.2 126 270-412 488-622 (785)
95 2l32_A Small archaeal modifier 94.2 0.035 1.2E-06 45.3 3.7 58 2-63 3-63 (74)
96 3cmq_A Phenylalanyl-tRNA synth 93.8 0.52 1.8E-05 51.6 13.3 99 273-385 50-162 (415)
97 1rws_A Hypothetical protein PF 90.2 0.1 3.6E-06 42.7 1.8 53 8-62 21-73 (77)
98 2g1e_A Hypothetical protein TA 90.2 0.39 1.3E-05 40.3 5.4 62 1-62 1-86 (90)
99 1vjk_A Molybdopterin convertin 88.9 0.37 1.3E-05 41.3 4.4 52 11-62 30-94 (98)
100 2eki_A DRG 1, developmentally- 88.5 1.3 4.5E-05 37.3 7.2 53 12-64 29-89 (93)
101 1fm0_D Molybdopterin convertin 87.7 1.3 4.5E-05 36.2 6.9 51 11-61 18-76 (81)
102 3pco_B Phenylalanyl-tRNA synth 87.6 1.4 4.9E-05 52.2 9.7 128 276-412 494-630 (795)
103 2q5w_D Molybdopterin convertin 84.6 0.56 1.9E-05 38.1 3.0 51 12-62 20-73 (77)
104 2hj1_A Hypothetical protein; s 83.3 0.59 2E-05 40.0 2.6 58 12-69 30-92 (97)
105 3po0_A Small archaeal modifier 82.2 1.4 4.9E-05 36.7 4.7 51 11-61 21-84 (89)
106 3rpf_C Molybdopterin convertin 80.6 2 6.8E-05 34.6 4.7 59 2-61 3-69 (74)
107 2l52_A Methanosarcina acetivor 75.6 3.1 0.00011 35.5 4.8 52 10-62 21-95 (99)
108 3dwg_C 9.5 kDa culture filtrat 69.4 8.9 0.00031 32.0 6.2 50 11-61 20-88 (93)
109 1m5w_A Pyridoxal phosphate bio 62.1 21 0.00073 35.3 8.0 65 517-592 76-152 (243)
110 3gk0_A PNP synthase, pyridoxin 61.7 17 0.00058 36.7 7.2 65 517-592 104-180 (278)
111 3o6c_A PNP synthase, pyridoxin 58.0 14 0.0005 36.9 6.0 65 517-592 75-149 (260)
112 1v8c_A MOAD related protein; r 48.3 18 0.0006 34.1 4.7 50 11-61 17-82 (168)
113 1wxq_A GTP-binding protein; st 46.2 8.1 0.00028 41.8 2.3 53 10-62 341-395 (397)
114 2qjl_A URM1, ubiquitin-related 45.2 35 0.0012 28.8 5.7 46 16-61 30-94 (99)
115 1vje_A Autoinducer-2 productio 42.9 73 0.0025 29.6 7.7 60 69-131 53-114 (166)
116 1j6x_A Autoinducer-2 productio 38.6 86 0.0029 28.9 7.4 58 69-129 51-110 (160)
117 1wgk_A Riken cDNA 2900073H19 p 35.1 67 0.0023 28.0 6.0 50 12-61 34-103 (114)
118 1j6w_A Autoinducer-2 productio 33.7 1E+02 0.0034 29.0 7.1 59 69-129 50-113 (175)
119 3c8y_A Iron hydrogenase 1; dit 30.3 1.2E+02 0.0041 34.3 8.8 57 1-58 1-73 (574)
120 2ywi_A Hypothetical conserved 29.5 94 0.0032 28.8 6.7 62 539-609 80-147 (196)
121 3u5r_E Uncharacterized protein 29.4 53 0.0018 31.7 5.0 62 539-609 93-160 (218)
122 2l5o_A Putative thioredoxin; s 28.9 1.1E+02 0.0038 26.8 6.8 43 559-609 79-123 (153)
123 1j98_A Autoinducer-2 productio 28.5 81 0.0028 29.0 5.5 59 69-129 50-114 (157)
124 3ewl_A Uncharacterized conserv 28.5 1.1E+02 0.0038 26.4 6.7 11 586-596 107-117 (142)
125 2lrn_A Thiol:disulfide interch 27.1 56 0.0019 29.0 4.4 61 539-608 63-125 (152)
126 3pzy_A MOG; ssgcid, seattle st 26.2 99 0.0034 28.6 6.0 64 533-597 2-75 (164)
127 2f9s_A Thiol-disulfide oxidore 24.4 51 0.0017 29.2 3.5 61 539-609 60-120 (151)
128 2bt6_A Adrenodoxin 1; rutheniu 23.7 54 0.0018 27.9 3.3 28 1-28 6-37 (108)
129 3lwa_A Secreted thiol-disulfid 22.1 2.5E+02 0.0087 25.4 8.2 39 566-609 125-163 (183)
130 1lu4_A Soluble secreted antige 21.9 1E+02 0.0034 26.3 4.9 60 539-609 56-115 (136)
131 3or5_A Thiol:disulfide interch 21.3 1.3E+02 0.0044 26.7 5.8 63 539-609 68-133 (165)
132 2al3_A TUG long isoform; TUG U 21.2 2.5E+02 0.0087 23.2 6.7 60 2-63 12-82 (90)
133 3i9v_3 NADH-quinone oxidoreduc 21.1 1.2E+02 0.0042 35.7 6.8 27 1-28 1-27 (783)
134 3h16_A TIR protein; bacteria T 21.0 48 0.0017 30.3 2.6 62 538-600 20-86 (154)
135 3jrn_A AT1G72930 protein; TIR 20.9 83 0.0028 29.7 4.2 45 538-582 8-53 (176)
136 1jwq_A N-acetylmuramoyl-L-alan 20.0 1.7E+02 0.0058 27.4 6.3 47 550-596 30-80 (179)
No 1
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=7.3e-133 Score=1169.63 Aligned_cols=631 Identities=50% Similarity=0.905 Sum_probs=613.0
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~ 80 (783)
||+|++|||++++++.|+|+.+||+++++.+++.+|+|+|||+++||++|++.||+|++++++|++|+.++|||++|||+
T Consensus 1 ~~~~~~~d~~~~~~~~~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~~~HSa~HlL~ 80 (642)
T 1qf6_A 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG 80 (642)
T ss_dssp -CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHHHHHHHHHHHH
T ss_pred CceEEcCCCCeEEecCCCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhh
Q psy9574 81 YAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKII 160 (783)
Q Consensus 81 ~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll 160 (783)
+|++++||++++++|+++++||||||+.+.++|++|+.+||++||++|++|+||++.++|++||+++|...|++||++|+
T Consensus 81 ~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li 160 (642)
T 1qf6_A 81 HAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSIL 160 (642)
T ss_dssp HHHHHHCTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhCCCcEEEECCccCCeeEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhh
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred -ccCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHHhhh
Q psy9574 161 -NLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAE 239 (783)
Q Consensus 161 -~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~ 239 (783)
+.++.++.|++|+||+|+|+|+||||||||+||.|+|++++++||+||+++++|+|+||++|+++++|++|++.+++|+
T Consensus 161 ~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~eea~ 240 (642)
T 1qf6_A 161 DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAA 240 (642)
T ss_dssp HHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcccCCCCceEEEEECCEEEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCchhHHhhhhhhhhccc
Confidence 8787756899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe
Q psy9574 240 KRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT 319 (783)
Q Consensus 240 ~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 319 (783)
++|||+||++|+||++++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||+.|.++||..
T Consensus 241 ~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~ 320 (642)
T 1qf6_A 241 KRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT 320 (642)
T ss_dssp TTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEE
T ss_pred cCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHH
Q psy9574 320 KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVF 399 (783)
Q Consensus 320 ~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~ 399 (783)
+.++++++||||+|++++++|+++++||++||+|+||+|+|||+|.+||++||+|+|||+|+|+|+||+++++++|+.++
T Consensus 321 d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~ 400 (642)
T 1qf6_A 321 SSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGC 400 (642)
T ss_dssp EETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHH
T ss_pred ecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeee
Q psy9574 400 NELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQC 479 (783)
Q Consensus 400 ~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~ 479 (783)
++++.++|+.|||+++.+.+++++.+++|+++.|+.++..+.++|++.|++|++++|.++||||++|+.+.|++|+.|+|
T Consensus 401 i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~ 480 (642)
T 1qf6_A 401 IRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQC 480 (642)
T ss_dssp HHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEe
Confidence 99999999999996689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHH
Q psy9574 480 GTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFN 559 (783)
Q Consensus 480 g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~ 559 (783)
||+|+||++|+||+++|.+.+|+++.|+|+|++++||+||++++|+|+|+|.||.|++|+||+|+|++++..++|.+|++
T Consensus 481 gti~~df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a~~v~~ 560 (642)
T 1qf6_A 481 GTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQ 560 (642)
T ss_dssp EEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred eeEEEeccCCccCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccc
Q psy9574 560 FLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLG 639 (783)
Q Consensus 560 ~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~ 639 (783)
.|+++|++|++|++++++|+||++|++.|+||+||||++|+++|+|+||+ +++...+
T Consensus 561 ~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~-----------------------r~~~~~~ 617 (642)
T 1qf6_A 561 KLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRT-----------------------RRGKDLG 617 (642)
T ss_dssp HHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEE-----------------------SSSCEEE
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEE-----------------------CCCCceE
Confidence 99999999999999999999999999999999999999999999999999 6666668
Q ss_pred cCCHHHHHHHHHHhh
Q psy9574 640 IVTLEKAFYLAEKEN 654 (783)
Q Consensus 640 ~~~~~~a~~~~~~~~ 654 (783)
.|+++++++.+++..
T Consensus 618 ~v~~~e~~~~l~~~~ 632 (642)
T 1qf6_A 618 SMDVNEVIEKLQQEI 632 (642)
T ss_dssp EECHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHH
Confidence 999999999887544
No 2
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=3.8e-128 Score=1136.17 Aligned_cols=629 Identities=40% Similarity=0.739 Sum_probs=608.0
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~ 80 (783)
||+|++|||++++++.|+|+.|||+++++.+++.+|+|+|||+++||++|++.||+|+|++++|++|+++||||++|||+
T Consensus 3 ~~~i~~~dg~~~~~~~g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~ 82 (645)
T 1nyr_A 3 QINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMA 82 (645)
T ss_dssp -CBBCCTTSCCCBCCTTCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCEEEecCCCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccchhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhh
Q psy9574 81 YAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKII 160 (783)
Q Consensus 81 ~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll 160 (783)
+|++++||++++.+|+++++||||||+.+.++|++|+.+||++||++|++|+||++.+++++||+++|.+ ++||++|+
T Consensus 83 ~A~~~~~~~~~~~~g~~~~~g~~~Df~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~--~~yk~~li 160 (645)
T 1nyr_A 83 HAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSN--DEYKLELI 160 (645)
T ss_dssp HHHHHHSSSCEECCCCEETTEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSS--CHHHHHHH
T ss_pred HHHHHHcCCcEEEECCccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhh--CcchHHHh
Confidence 9999999999999999999999999998889999999999999999999999999999999999999987 79999999
Q ss_pred ccCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccccchhhHHHHHHHHhhhc
Q psy9574 161 NLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEK 240 (783)
Q Consensus 161 ~~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~ 240 (783)
+.+++++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||++++++++|+|++|++|+++++|++|++++++|++
T Consensus 161 ~~~~~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~ea~~ 240 (645)
T 1nyr_A 161 DAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE 240 (645)
T ss_dssp CCCSSSCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCeeEEEEECCEEEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhhhhh
Confidence 99887668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhccccccccc-CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe
Q psy9574 241 RDHRKLGKQLNLFHFQEE-SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT 319 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~-~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~ 319 (783)
||||+||++|+||++++. ++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||+.|.++||++
T Consensus 241 rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~ 320 (645)
T 1nyr_A 241 RDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP 320 (645)
T ss_dssp TCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC
T ss_pred hhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999997
Q ss_pred -eeCC-ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHH
Q psy9574 320 -KSEN-RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIV 397 (783)
Q Consensus 320 -~~~~-~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~ 397 (783)
+.++ ++++||||+|++++++|+++.+||++||+|+||+|+|||+|.++|++||+|+|||+|+|+|+||+++++.+++.
T Consensus 321 ~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~ 400 (645)
T 1nyr_A 321 MQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFK 400 (645)
T ss_dssp EEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHH
T ss_pred EecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHH
Confidence 8888 99999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEEeecCC----CCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCC
Q psy9574 398 VFNELVHKVYNEFGFKKIKIKLALRP----NKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSI 473 (783)
Q Consensus 398 e~~~~~~~i~~~lGl~~~~i~l~~~~----~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~ 473 (783)
+++.++.++|+.|||+++.+.+++++ .+++|+++.|+.++..+.++|+..|+++..++|.++||||++++.+.|++
T Consensus 401 e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~l 480 (645)
T 1nyr_A 401 RVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAM 480 (645)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTT
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhh
Confidence 99999999999999977999999997 56789999999999999999999999999999999999999999999999
Q ss_pred CCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecC-cchHH
Q psy9574 474 GRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNIS-KEQIE 552 (783)
Q Consensus 474 g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~-~~~~~ 552 (783)
|+.|+|||+|+||++++|||+.|++.+|+.+.|+|||+|++||+||++++|+|+++|.||.|++|+||+|+|++ ++..+
T Consensus 481 g~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~~~~~ 560 (645)
T 1nyr_A 481 GKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYD 560 (645)
T ss_dssp SCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHH
T ss_pred CchhhcceEEeecccccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEec
Q psy9574 553 YAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSG 632 (783)
Q Consensus 553 ~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~ 632 (783)
+|.+|++.|+++|++|++|++++++|+|+++|++.|+||+||||++|+++|+|+||+
T Consensus 561 ~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~----------------------- 617 (645)
T 1nyr_A 561 YARQLQDELKSQGVRVSIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQ----------------------- 617 (645)
T ss_dssp HHHHHHHHHHTTTCCEEECCSSCCHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEE-----------------------
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEE-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCHHHHHHHHHHhh
Q psy9574 633 IKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 633 ~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
+++...+.++++++++.+.+..
T Consensus 618 r~~~~~~~v~~~e~~~~l~~~~ 639 (645)
T 1nyr_A 618 YGSQDQETVEKDEFIWNLVDEI 639 (645)
T ss_dssp TTSSCCCEEEHHHHHHHHHHHH
T ss_pred CCCCcEEEEEHHHHHHHHHHHH
Confidence 6666668999999998886543
No 3
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=3.4e-81 Score=704.05 Aligned_cols=394 Identities=38% Similarity=0.743 Sum_probs=375.6
Q ss_pred hhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHH-HHcCCeEeecCcccchHHHhhhCCcccCCCCc
Q psy9574 238 AEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIY-KYNGYKEIKTPQMLDLSLWKKTGHWENYKDNM 316 (783)
Q Consensus 238 ~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~-~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~m 316 (783)
++++||++||++|+||+|++.++|+++|+|.|+.++++|++++++.+ .++||++|.||+|++.++|++||||+.|.++|
T Consensus 32 ~~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~em 111 (460)
T 3uh0_A 32 TPATMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDM 111 (460)
T ss_dssp CHHHHHHHHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGS
T ss_pred CCCCCHHHHHHhCCCceeccCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccce
Confidence 46799999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred eEee-e--CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHH
Q psy9574 317 FTTK-S--ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIK 393 (783)
Q Consensus 317 y~~~-~--~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~ 393 (783)
|.+. . +++.++||||+|++++++|+++++||++||+|++|+|+|||+|.+++++||+|+|||+|.|+|+||++++++
T Consensus 112 y~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~ 191 (460)
T 3uh0_A 112 FKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVK 191 (460)
T ss_dssp CEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHH
T ss_pred EEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHH
Confidence 9994 3 478999999999999999999999999999999999999999997658999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhcCCe--------eEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCccccc
Q psy9574 394 NEIVVFNELVHKVY-NEFGFK--------KIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPK 464 (783)
Q Consensus 394 ~e~~e~~~~~~~i~-~~lGl~--------~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~ 464 (783)
+|+.++++++.++| +.|||+ .+.+.++++|.+++|+++.|+.++..|.++|+..|++|.+++|.++||||+
T Consensus 192 ~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpk 271 (460)
T 3uh0_A 192 SEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPK 271 (460)
T ss_dssp HHHHHHHHHHHHHHTTTSCCC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccce
Confidence 99999999999999 999998 799999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy9574 465 IEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMIL 544 (783)
Q Consensus 465 ~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi 544 (783)
+|+.+.|++|+.|+|||+|+||+++.||+++|.+.+|+...|+|||++++||+||++++|+|++++.||+|+||+||+|+
T Consensus 272 id~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~~g~~P~~laP~qv~Vi 351 (460)
T 3uh0_A 272 LDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVII 351 (460)
T ss_dssp EEEEEECTTSCEEEEEEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCGGGCSCCEEEE
T ss_pred EEEEEEccCCCeeeecccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHcCCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred ecCcc---hHHHHHHHHHHhHhC--------------CCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeE
Q psy9574 545 NISKE---QIEYAKKVFNFLKSK--------------KFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITE 607 (783)
Q Consensus 545 ~~~~~---~~~~a~~i~~~Lr~~--------------gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~v 607 (783)
|++++ ..++|.+|++.|+++ |++|++|+++.++|+||++|++.|+||+||||++|+++|+|+|
T Consensus 352 pi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtv 431 (460)
T 3uh0_A 352 PVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNI 431 (460)
T ss_dssp ESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEE
T ss_pred EecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEE
Confidence 99987 899999999999998 9999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCcccccccccceEEEecccCcc-cccCCHHHHHHHHHHhh
Q psy9574 608 REIIIDRPKHRINREIIAPELRLSGIKNEP-LGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 608 r~~~~~~~~~~~n~~I~~~~v~li~~~g~~-~~~~~~~~a~~~~~~~~ 654 (783)
|+ +++.. ...++++++++.+.+..
T Consensus 432 r~-----------------------r~~~e~q~~v~~~el~~~l~~~~ 456 (460)
T 3uh0_A 432 RE-----------------------RDNRKSFEKLTMSQIWEKFIELE 456 (460)
T ss_dssp EE-----------------------GGGTTSCEEECHHHHHHHHHHHH
T ss_pred EE-----------------------CCCCceeEEeeHHHHHHHHHHHH
Confidence 99 55545 68999999999887654
No 4
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=8.7e-74 Score=639.16 Aligned_cols=390 Identities=53% Similarity=1.006 Sum_probs=373.1
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK 320 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~ 320 (783)
|||++||+++|||++++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|++||||+.|.++||+.|
T Consensus 1 ~dh~~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d 80 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTS 80 (401)
T ss_dssp CCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEE
T ss_pred CChHHHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHH
Q psy9574 321 SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFN 400 (783)
Q Consensus 321 ~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~ 400 (783)
.++++++||||+|+++++++++++.||++||+|+||+|+|||+|.+||++||+|+|||+|.|+|+||+++++++++.+++
T Consensus 81 ~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i 160 (401)
T 1evl_A 81 SENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCI 160 (401)
T ss_dssp ETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHH
T ss_pred cCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988899999999999999999999888999999999
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeec
Q psy9574 401 ELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480 (783)
Q Consensus 401 ~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g 480 (783)
+++.++|+.|||+.+.+.+++++....|..+.|+.++..+.++|++.|+++++++|.++||||++|+.+.++.|+.++||
T Consensus 161 ~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~g 240 (401)
T 1evl_A 161 RLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240 (401)
T ss_dssp HHHHHHHHTTTCSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEE
T ss_pred HHHHHHHHHcCCCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEee
Confidence 99999999999966889999988888899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHH
Q psy9574 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNF 560 (783)
Q Consensus 481 ~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~ 560 (783)
|+++||+++.||+++|.+.+|+...|+|+|++++||++|++++|+|++++.||.|++|+||+|+|++++..++|.+|++.
T Consensus 241 t~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~ 320 (401)
T 1evl_A 241 TVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQK 320 (401)
T ss_dssp EEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHH
T ss_pred eeeeccccccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999989999999999999999999999999999999
Q ss_pred hHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCccccc
Q psy9574 561 LKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGI 640 (783)
Q Consensus 561 Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~ 640 (783)
||++|++|++|+++.++|+|+++|++.|+||+||||++|+++|+|+||++ .+|+ ...
T Consensus 321 Lr~~Gi~v~~d~~~~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~----------------------~~~~-q~~ 377 (401)
T 1evl_A 321 LSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTR----------------------RGKD-LGS 377 (401)
T ss_dssp HHHTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEET----------------------TSCE-EEE
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEEC----------------------CCCc-eEE
Confidence 99999999999998999999999999999999999999999999999993 4444 579
Q ss_pred CCHHHHHHHHHHh
Q psy9574 641 VTLEKAFYLAEKE 653 (783)
Q Consensus 641 ~~~~~a~~~~~~~ 653 (783)
++++++++.+++.
T Consensus 378 v~~~el~~~l~~~ 390 (401)
T 1evl_A 378 MDVNEVIEKLQQE 390 (401)
T ss_dssp EEHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHH
Confidence 9999998887653
No 5
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.9e-65 Score=581.61 Aligned_cols=378 Identities=31% Similarity=0.551 Sum_probs=351.1
Q ss_pred hHHHHHHHHhhhcccHH--HHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh
Q psy9574 228 QEIYLHMIKEAEKRDHR--KLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK 305 (783)
Q Consensus 228 l~~~~~~~~~~~~~~h~--~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~ 305 (783)
--++.+.+++++++||+ +||+++++| .++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+
T Consensus 9 h~~~~~~~~~~~~~~h~~~~lg~~~~~~----~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~ 84 (471)
T 3a32_A 9 HIDYAYELDITVKPDSRVPVFNREFATF----TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKV 84 (471)
T ss_dssp HHHHHHHTTSBCCTTSBCTTTCSBTHHH----HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH
T ss_pred HHHHHHHcCccccCCchhHHHHHhcCCc----cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhh
Confidence 34566778899999999 999999987 589999999999999999999999999999999999999999999999
Q ss_pred hCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC---CCCceEEEecceeecCCCCCCCCcccceeEEEec
Q psy9574 306 TGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR---DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDD 382 (783)
Q Consensus 306 sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~---~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d 382 (783)
||||+.|.++||++|.+++.++||||+|++++++|++++.||+ +||+|+||+|+|||+|.++..+||+|+|||+|.|
T Consensus 85 sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~ 164 (471)
T 3a32_A 85 SGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDD 164 (471)
T ss_dssp TCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEE
T ss_pred ccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECC
Confidence 9999999999999999999999999999999999999999998 9999999999999999963239999999999999
Q ss_pred eeEecCchhHHHHHHHHHHHHHHHHhh-cCC----eeEEEEeecCC-----CCCCCChhhHHHHHHHHHHHHHhc----C
Q psy9574 383 GHIFCTKSQIKNEIVVFNELVHKVYNE-FGF----KKIKIKLALRP-----NKRIGENNIWDLAENSLREAISSS----G 448 (783)
Q Consensus 383 ~~~f~~~~~~~~e~~e~~~~~~~i~~~-lGl----~~~~i~l~~~~-----~~~~g~~~~~~~~~~~l~~~l~~~----g 448 (783)
+|+||.++++.+++.+++.++.++|+. ||| +.+.+.+++++ ..++|..+.|+.++..+.+.++.. |
T Consensus 165 ~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~ 244 (471)
T 3a32_A 165 AHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYG 244 (471)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 999 67999999987 667888888999887777766554 8
Q ss_pred CceeecCCCCCcccccEEEEeec---CCCCeeeecceeeecCcccccCceeee--cCCcccccEEEeecccccHHHHHHH
Q psy9574 449 VTWEEFPGEGAFYGPKIEYHLKD---SIGRSWQCGTIQIDFSMPHRLGAEYIA--ENNTRKTPVMLHRAIIGSLERFIAI 523 (783)
Q Consensus 449 ~~~~~~~g~~~y~g~~~e~~~~d---~~g~~~~~g~~~lD~~~~~r~d~~y~~--~~g~~~~p~~i~~~~~G~ieRli~~ 523 (783)
+++...++.++|+||+++..+.| ++++.+++|++++|++++++||++|.+ .+|.. .|+++|++++|+++|++++
T Consensus 245 ~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~-e~~~i~~~i~GgieRli~~ 323 (471)
T 3a32_A 245 IDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIE-EVYIIHRALLGSIERFLGV 323 (471)
T ss_dssp CEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCS-CEEEEEEEEEEEHHHHHHH
T ss_pred CceEecccchhhCCCccceEEeccHHhhhhhheeeeEEecccccccCCceEeccccCCce-eeEEEeccccCcHHHHHHH
Confidence 88888999999999999988878 788889999999999999999988888 77877 8888899999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEecC------cchHHHHHHHHHHhHhCCCeEEEEC-CCccHHHHHHHhh-cCCCCEEEEE
Q psy9574 524 LVENYSGAMPLWLAPIQVMILNIS------KEQIEYAKKVFNFLKSKKFRVEVDL-RNEKIAYKIRLHS-LEKLPYIIIV 595 (783)
Q Consensus 524 LlE~~~~~~P~~lap~qv~Vi~~~------~~~~~~a~~i~~~Lr~~gi~v~~d~-~~~~l~~k~~~A~-~~gip~~iiv 595 (783)
|+|+++|.||+|++|+||+|+|++ ++..++|.++++.||++|++|++|+ ++.++|+|+++|+ +.|+||+|+|
T Consensus 324 lie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~~~gip~~iii 403 (471)
T 3a32_A 324 YLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIESTAKPAVNVFI 403 (471)
T ss_dssp HHHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 999988899999999999999998 6688999999999999999999999 8889999999999 9999999999
Q ss_pred cccccccCceeEEEe
Q psy9574 596 GNKELCENKITEREI 610 (783)
Q Consensus 596 G~~e~~~~~V~vr~~ 610 (783)
|++|+++|+|+||++
T Consensus 404 G~~e~~~~~V~vr~r 418 (471)
T 3a32_A 404 GAKEVREKVLDVRVF 418 (471)
T ss_dssp CHHHHHHTEEEEEEE
T ss_pred CchhhhCCEEEEEEC
Confidence 999999999999994
No 6
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=8.9e-63 Score=555.52 Aligned_cols=344 Identities=20% Similarity=0.346 Sum_probs=310.3
Q ss_pred HHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEee-eC
Q psy9574 245 KLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTTK-SE 322 (783)
Q Consensus 245 ~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~-~~ 322 (783)
.|+.++||++++..++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+ ||||+.|.++||++. .+
T Consensus 30 ~l~~~aglid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g 109 (518)
T 3ial_A 30 AIMDAAELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGG 109 (518)
T ss_dssp HHHHHTTCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEET
T ss_pred HHHHHCCCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCC
Confidence 4566669888855799999999999999999999999999999999999999999999975 999999999999994 43
Q ss_pred ----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEe-cCchhHHHHHH
Q psy9574 323 ----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIF-CTKSQIKNEIV 397 (783)
Q Consensus 323 ----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f-~~~~~~~~e~~ 397 (783)
+++++||||+|++++.+|+++++||++||+|+||+|+|||+|.+ |++||+|+|||+|.|+|+| ++++++++++.
T Consensus 110 ~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~-~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~ 188 (518)
T 3ial_A 110 LQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETK-NTKPLIRVREIHWNEAHCCHATAEDAVSQLS 188 (518)
T ss_dssp TEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCC-SCBTTTBCSEEEEEEEEEEESSHHHHHHHHH
T ss_pred CcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCC-CCCCCceeeEEEEeeEEEEECCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999986 6899999999999999999 67889999999
Q ss_pred HHHHHHHHHH-hhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCe
Q psy9574 398 VFNELVHKVY-NEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRS 476 (783)
Q Consensus 398 e~~~~~~~i~-~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~ 476 (783)
++++++.++| +.|||+... +.++. |+ .+.|++|++++|+.+++ |+.
T Consensus 189 ~~l~~~~~i~~~~LGlp~~~---~~~~~--------~e--------------------~~~gA~yt~~iE~~~pd--gr~ 235 (518)
T 3ial_A 189 DYWKVIDTIFSDELCFKGQK---LRRVC--------WD--------------------RFPGADYSEVSDVVMPC--GRV 235 (518)
T ss_dssp HHHHHHHHHHTTTTCCCCEE---EEECG--------GG--------------------CCTTCSEEEEEEEECTT--SCE
T ss_pred HHHHHHHHHHHHhcCCcEEe---eecCh--------hh--------------------ccCCCccceEEEEEcCC--CCE
Confidence 9999999999 999998432 22321 22 13467889999999987 899
Q ss_pred eeeccee-eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEecC----
Q psy9574 477 WQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNIS---- 547 (783)
Q Consensus 477 ~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~~---- 547 (783)
+++||++ +|+++|+||+++|.+.+|+...|++ +++|+.+|+|++|+|+|++ .||+||||+||+|+|++
T Consensus 236 ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~---~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~ 312 (518)
T 3ial_A 236 LQTAGIHNLGQRFSSTFDILYANKANESVHPYL---TCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKK 312 (518)
T ss_dssp EEEEEEEEEETHHHHHTTCCEECTTCCEECCEE---EEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCT
T ss_pred EEEeceecccchhhhhcCcEEECCCCCEeeeEE---eccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCcc
Confidence 9999999 9999999999999999999888754 8888779999999999985 99999999999999998
Q ss_pred ------cchHHHHHHHHHHhHhC-CCeEEEECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCccc
Q psy9574 548 ------KEQIEYAKKVFNFLKSK-KFRVEVDLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRI 619 (783)
Q Consensus 548 ------~~~~~~a~~i~~~Lr~~-gi~v~~d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~ 619 (783)
++..++|.+|++.|+++ |+||.+|+| +.++|+||++|++.|+|++|+||++|+++|+|+||+
T Consensus 313 ~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael~GvP~~i~vG~ke~e~g~V~vr~---------- 382 (518)
T 3ial_A 313 NNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVP---------- 382 (518)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEE----------
T ss_pred ccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEE----------
Confidence 45789999999999999 999999999 899999999999999999999999999999999999
Q ss_pred ccccccceEEEecccCcc--cccCCHHHHHH
Q psy9574 620 NREIIAPELRLSGIKNEP--LGIVTLEKAFY 648 (783)
Q Consensus 620 n~~I~~~~v~li~~~g~~--~~~~~~~~a~~ 648 (783)
+++.. ...+++++++.
T Consensus 383 -------------Rd~~~~~k~~v~~~el~~ 400 (518)
T 3ial_A 383 -------------RDVGKDQKRVIPITEVMK 400 (518)
T ss_dssp -------------TTTCGGGCEEEEHHHHHC
T ss_pred -------------CCCCccceeEeeHHHHhh
Confidence 66555 67899999843
No 7
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-61 Score=548.56 Aligned_cols=366 Identities=19% Similarity=0.261 Sum_probs=320.4
Q ss_pred hccccccchhhHHHHHHHHhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcc
Q psy9574 218 YGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQM 297 (783)
Q Consensus 218 ~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l 297 (783)
.|+..+..+++.+|. ..|++++||+++ ..++|+++|+|.|+.++++|++++++.+.++||++|.||.|
T Consensus 21 ~~~~~~~~~~f~~wy-----------~~l~~~~~lid~-~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l 88 (519)
T 4hvc_A 21 LGLEAKKEENLADWY-----------SQVITKSEMIEY-HDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMF 88 (519)
T ss_dssp --CCSCTTTCHHHHH-----------HHHHHHTTCEEE-CSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSE
T ss_pred ecCccCcccCchHHH-----------HHHHHHCCCeEe-cCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecccc
Confidence 577666666777764 456777898887 45999999999999999999999999999999999999999
Q ss_pred cchHHHhh-hCCcccCCCCceEe-eeCC----ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCC
Q psy9574 298 LDLSLWKK-TGHWENYKDNMFTT-KSEN----RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHG 371 (783)
Q Consensus 298 ~~~~l~~~-sg~~~~~~~~my~~-~~~~----~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~G 371 (783)
++.++|.+ ||||+.|.++||.+ +.++ +.++||||+|++++++|+++++||++||+|++|+|+|||+|.+ +++|
T Consensus 89 ~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~-~~~G 167 (519)
T 4hvc_A 89 VSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK-HPQP 167 (519)
T ss_dssp EEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCS-CCBT
T ss_pred ccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCC-CCCC
Confidence 99999997 89999999999998 5554 4699999999999999999999999999999999999999976 6799
Q ss_pred cccceeEEEeceeE-ecCchhHHHHHHHHHHHHHHHHhhc-CCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy9574 372 MMRTRSFIQDDGHI-FCTKSQIKNEIVVFNELVHKVYNEF-GFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGV 449 (783)
Q Consensus 372 L~R~ReF~q~d~~~-f~~~~~~~~e~~e~~~~~~~i~~~l-Gl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~ 449 (783)
|+|+|||+|.|+|+ ||+++++++|+.++++++.++|+.| ||+ +.+..++++.+++|++..|+
T Consensus 168 l~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp-~~~~~~t~~e~~~Ga~~t~~--------------- 231 (519)
T 4hvc_A 168 FLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIP-VVKGRKTEKEKFAGGDYTTT--------------- 231 (519)
T ss_dssp TTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCC-CEEEECCTTTSCTTSSEEEE---------------
T ss_pred CcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCc-ceeeecCCccccCCchhhee---------------
Confidence 99999999999997 8899999999999999999999997 898 45555677777766654432
Q ss_pred ceeecCCCCCcccccEEEEeecCCCCeeeecce-eeecCcccccCceeeecC--CcccccEEEeecccccHHHHHHHHHH
Q psy9574 450 TWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTI-QIDFSMPHRLGAEYIAEN--NTRKTPVMLHRAIIGSLERFIAILVE 526 (783)
Q Consensus 450 ~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~-~lD~~~~~r~d~~y~~~~--g~~~~p~~i~~~~~G~ieRli~~LlE 526 (783)
+|..+ ++.|+.|++||+ ++|+++|+||+++|.+.+ |+.. ++|.+++|+.+|++++|+|
T Consensus 232 ---------------iEa~~-p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~---~vh~~~~Gi~~R~l~aliE 292 (519)
T 4hvc_A 232 ---------------IEAFI-SASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQ---FAYQNSWGLTTRTIGVMTM 292 (519)
T ss_dssp ---------------EEEEE-TTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEE---ECEEEEEEEETHHHHHHHH
T ss_pred ---------------eeeee-ccCCCEEeecccccccchhhhhcCcEEeccccCCCEE---EEEEccccHHHHHHHHHHH
Confidence 45443 667999999999 699999999999999974 5543 5677889977999999999
Q ss_pred hcCC----CCCCCCCCceEEEEecC----------cchHHHHHHHHHHhHhCCCeEEEECCCc-cHHHHHHHhhcCCCCE
Q psy9574 527 NYSG----AMPLWLAPIQVMILNIS----------KEQIEYAKKVFNFLKSKKFRVEVDLRNE-KIAYKIRLHSLEKLPY 591 (783)
Q Consensus 527 ~~~~----~~P~~lap~qv~Vi~~~----------~~~~~~a~~i~~~Lr~~gi~v~~d~~~~-~l~~k~~~A~~~gip~ 591 (783)
+|++ .||+|++|+||+|+|++ ++..++|.+|++.|+++|++|++|+|+. ++|+||++|+++|+||
T Consensus 293 ~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ael~GiP~ 372 (519)
T 4hvc_A 293 VHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPI 372 (519)
T ss_dssp HHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSE
T ss_pred HhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHhcCCCE
Confidence 9863 79999999999999998 3578999999999999999999999985 9999999999999999
Q ss_pred EEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 592 IIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 592 ~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
+|+||++|+++|+|+||+ +++.....++++++++.+.+..
T Consensus 373 ~ivIG~kele~g~V~vr~-----------------------R~tgeq~~v~~~el~~~l~~ll 412 (519)
T 4hvc_A 373 RLEVGPRDMKSCQFVAVR-----------------------RDTGEKLTVAENEAETKLQAIL 412 (519)
T ss_dssp EEEECHHHHHHTEEEEEE-----------------------TTTCCEEEEEGGGHHHHHHHHH
T ss_pred EEEECchhhcCCeEEEEE-----------------------CCCCCccceeHHHHHHHHHHHH
Confidence 999999999999999999 6555558999999998886554
No 8
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=1.1e-58 Score=523.83 Aligned_cols=350 Identities=21% Similarity=0.303 Sum_probs=304.1
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT 319 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~ 319 (783)
..|..|+++.||++++ .++|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|.+ ||||+.|.++||++
T Consensus 16 ~~~~~l~~~~~li~~~-~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~ 94 (477)
T 1hc7_A 16 EWYLEVIQKAELADYG-PVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVV 94 (477)
T ss_dssp HHHHHHHHHTTSEEEC-SSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEE
T ss_pred HHHHHHHHHCCCeeec-CCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEE
Confidence 4699999999988875 479999999999999999999999999999999999999999999998 99999999999999
Q ss_pred -eeC----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeE-ecCchhHH
Q psy9574 320 -KSE----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHI-FCTKSQIK 393 (783)
Q Consensus 320 -~~~----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~ 393 (783)
+.+ +++++||||+|++++++|++++.||++||+|+||+|+|||+|.+ |+ ||+|+|||+|+|+|+ ++++++++
T Consensus 95 ~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-~r-Gl~R~REF~q~d~~~~~~~~~~ad 172 (477)
T 1hc7_A 95 THAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-TR-PFLRTSEFLWQEGHTAHATREEAE 172 (477)
T ss_dssp EEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CB-TTTBCSEEEEEEEEEEESSHHHHH
T ss_pred ECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-CC-CcceeEEEEEccEEEEeCCHHHHH
Confidence 555 68999999999999999999999999999999999999999985 55 999999999999998 55667899
Q ss_pred HHHHHHHHHHHHHH-hhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecC
Q psy9574 394 NEIVVFNELVHKVY-NEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDS 472 (783)
Q Consensus 394 ~e~~e~~~~~~~i~-~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~ 472 (783)
+|+..+++++.++| +.|||+ +.+.+++++.++.|....| .+|..+.|
T Consensus 173 ~E~~~~l~~~~~i~~~~Lgl~-~~~~~~~~~e~~~g~~~~~------------------------------~ie~~~~d- 220 (477)
T 1hc7_A 173 EEVRRMLSIYARLAREYAAIP-VIEGLKTEKEKFAGAVYTT------------------------------TIEALMKD- 220 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-CEEEECCTTTSCTTSSEEE------------------------------EEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHhcCCe-EEEEeCChHHhcCCcccce------------------------------EEEEEcCC-
Confidence 99999999999999 899998 8888888766555543222 36666665
Q ss_pred CCCeeeeccee-eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEecC
Q psy9574 473 IGRSWQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNIS 547 (783)
Q Consensus 473 ~g~~~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~~ 547 (783)
|+.+++||++ ++++++.+|+++|.+.+|+...| |.+++|..+|++++|+|+|++ .||+|++|+||+|+|++
T Consensus 221 -gr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~---~~~~~GigeRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~ 296 (477)
T 1hc7_A 221 -GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYV---HTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIY 296 (477)
T ss_dssp -SCEEEEEEEEEEETHHHHHTTCEEECTTSCEEEC---EEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECC
T ss_pred -CcEEEEeeeEEcccccccccCeEEECCCCCEEee---eEeeccHHHHHHHHHHHHhCccccccCCcccCCceEEEEEcC
Confidence 7889999998 99999999999999988876554 446666559999999998863 89999999999999998
Q ss_pred c-----chHHHHHHHHHHhHhCCCeEEEECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCccccc
Q psy9574 548 K-----EQIEYAKKVFNFLKSKKFRVEVDLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINR 621 (783)
Q Consensus 548 ~-----~~~~~a~~i~~~Lr~~gi~v~~d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~ 621 (783)
+ +..++|.+|++.|+++|++|++|++ +.++|+||++|++.|+||+|+||++|+++|+|+||+
T Consensus 297 ~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~------------ 364 (477)
T 1hc7_A 297 KDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLAS------------ 364 (477)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEE------------
T ss_pred CcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHhhcCCCEEEEECcchhcCCEEEEEE------------
Confidence 5 6889999999999999999999999 899999999999999999999999999999999999
Q ss_pred ccccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 622 EIIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 622 ~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
++| ....++++++++.+.+.
T Consensus 365 -----------r~~-eq~~v~~~el~~~l~~~ 384 (477)
T 1hc7_A 365 -----------RLG-GKETLPLAALPEALPGK 384 (477)
T ss_dssp -----------TTS-CCCEEEGGGHHHHHHHH
T ss_pred -----------ecC-ceEEEeHHHHHHHHHHH
Confidence 554 45789999998887643
No 9
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=1.2e-58 Score=526.85 Aligned_cols=352 Identities=18% Similarity=0.266 Sum_probs=311.7
Q ss_pred ccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe
Q psy9574 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT 319 (783)
Q Consensus 241 ~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~ 319 (783)
++|..|++++||++++..++|+++|+|.|++++++|++++++.+.+ ||++|.||.|++.++|.+ +||++.|.++||++
T Consensus 42 ~~~~~l~~~~glid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~ 120 (501)
T 1nj1_A 42 EWFHNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWV 120 (501)
T ss_dssp HHHHHHHHHTTCEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEE
T ss_pred HhHHHHHHHCCCccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEE
Confidence 7899999999999986678999999999999999999999999999 999999999999999998 99999999999999
Q ss_pred e-eC----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEE-EeceeE-ecCchhH
Q psy9574 320 K-SE----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFI-QDDGHI-FCTKSQI 392 (783)
Q Consensus 320 ~-~~----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~-q~d~~~-f~~~~~~ 392 (783)
+ .+ +++++||||+|++++++|++++.||++||+|+||+|+|||+|+++ ++||+|+|||+ |.|+|+ |++++++
T Consensus 121 ~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~REF~~q~e~~~~~~~~e~a 199 (501)
T 1nj1_A 121 THGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFKEAHTIHATASEA 199 (501)
T ss_dssp EEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEEESSHHHH
T ss_pred ecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCC-CCCCceeEEEeeeeeEEEEECCHHHH
Confidence 4 43 689999999999999999999999999999999999999999953 77999999999 999996 5677889
Q ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecC
Q psy9574 393 KNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDS 472 (783)
Q Consensus 393 ~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~ 472 (783)
++++.++++++.++|+.|||+ +.+.++++...+.|+... ..+|+.+++
T Consensus 200 ~~e~~~~l~~~~~i~~~Lgl~-~~~~~~~~~e~~~~a~~~------------------------------~die~~l~~- 247 (501)
T 1nj1_A 200 EEQVERAVEIYKEFFNSLGIP-YLITRRPPWDKFPGSEYT------------------------------VAFDTLMPD- 247 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-CEEEECCTTTSCTTCSEE------------------------------EEEEEECTT-
T ss_pred HHHHHHHHHHHHHHHHHCCCe-EEEEeCCchhhcCCcccc------------------------------eEEEEEcCC-
Confidence 999999999999999999998 777776654443333222 236777776
Q ss_pred CCCeeeeccee-eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEec-
Q psy9574 473 IGRSWQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNI- 546 (783)
Q Consensus 473 ~g~~~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~- 546 (783)
|+.+++|+++ ++.+++.||+++|.+.+|+...|++ +++|..+|+|++|+|+|++ .||+|++|+||+|+|+
T Consensus 248 -g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~---~g~GigeRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~ 323 (501)
T 1nj1_A 248 -GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQ---TCYGLSDRVIASVIAIHGDESGLCLPPDVAAHQVVIVPII 323 (501)
T ss_dssp -SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEE---EEEEECTHHHHHHHHHTCCSSSEECCTTTSSCSEEEEECC
T ss_pred -CCEEEEEEEEeccccchhhcCeEEECCCCCEEeeee---ccccHHHHHHHHHHHHcCcccCccCCccccCceEEEEEec
Confidence 7889999997 8999999999999998887665544 5556339999999999874 7999999999999999
Q ss_pred C-c---chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccc
Q psy9574 547 S-K---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINRE 622 (783)
Q Consensus 547 ~-~---~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~ 622 (783)
+ + +..++|.+|++.|+++|++|++|+++.++|+||++|++.|+||+|+||++|+++|+|+||+
T Consensus 324 ~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~~~G~p~~iiiG~~e~~~~~V~vr~------------- 390 (501)
T 1nj1_A 324 FKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISR------------- 390 (501)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEECSEEEEECHHHHTTTEEEEEE-------------
T ss_pred cCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCCCEEEEECcchhhCCEEEEEE-------------
Confidence 5 4 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 623 IIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 623 I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
+++.....++++++++.+.+.
T Consensus 391 ----------r~t~eq~~v~~~el~~~l~~~ 411 (501)
T 1nj1_A 391 ----------RDTGEKVTADLQGIEETLREL 411 (501)
T ss_dssp ----------SSSCCEEEEETTTHHHHHHHH
T ss_pred ----------CCCCceEEEeHHHHHHHHHHH
Confidence 555445789999998887643
No 10
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=9.6e-58 Score=514.95 Aligned_cols=353 Identities=20% Similarity=0.269 Sum_probs=311.1
Q ss_pred cccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceE
Q psy9574 240 KRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFT 318 (783)
Q Consensus 240 ~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~ 318 (783)
...|..|+.+.||++++..++|+++|+|.|+.++++|++++++.+.++||++|.||.|++.++|.+ +|||+.|.++||+
T Consensus 8 ~~~~~~l~~~~~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~ 87 (459)
T 1nj8_A 8 SEWYSDILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYW 87 (459)
T ss_dssp HHHHHHHHHHTSSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEE
T ss_pred cHhHHHHHHhCCCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEE
Confidence 356999999999999876799999999999999999999999999999999999999999999986 9999999999999
Q ss_pred e-eeC----CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEE-EeceeEe-cCchh
Q psy9574 319 T-KSE----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFI-QDDGHIF-CTKSQ 391 (783)
Q Consensus 319 ~-~~~----~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~-q~d~~~f-~~~~~ 391 (783)
+ +.+ ++.++||||+|++++++|+++++||++||+|+||+|+|||+|.++ ++||+|+|||+ |+|+|+| +++++
T Consensus 88 ~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~~~~~~ 166 (459)
T 1nj8_A 88 VTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEE 166 (459)
T ss_dssp EEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHH
T ss_pred EeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEECCHHH
Confidence 8 443 789999999999999999999999999999999999999999953 78999999999 9999975 55678
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeec
Q psy9574 392 IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKD 471 (783)
Q Consensus 392 ~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d 471 (783)
+++++.+++.++.++|+.|||+ +.+.++++..++.|+... ..+|+.+.|
T Consensus 167 a~~e~~~~i~~~~~~~~~LGl~-~~~~~~~~~ek~~ga~~~------------------------------~~ie~~~~d 215 (459)
T 1nj8_A 167 AENQVKEAISIYKKFFDTLGIP-YLISKRPEWDKFPGAEYT------------------------------MAFDTIFPD 215 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-CEEEEECTTSCCTTCSEE------------------------------EEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCc-eEEeecCchhhcCCcccc------------------------------eeEEEEcCC
Confidence 8898899999999999999998 777777655444333222 236666665
Q ss_pred CCCCeeeeccee-eecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceEEEEec
Q psy9574 472 SIGRSWQCGTIQ-IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQVMILNI 546 (783)
Q Consensus 472 ~~g~~~~~g~~~-lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv~Vi~~ 546 (783)
|+.+++||++ ++.+++.+|+++|.+.+|+...+ |++++|..+|++++|+|++++ .||+|++|+||+|+|+
T Consensus 216 --g~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v---~~~~~GigeRli~alie~~~d~~gl~~P~~laP~qv~Iipi 290 (459)
T 1nj8_A 216 --GRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYA---YQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPL 290 (459)
T ss_dssp --SCEEEEEEEEEEETHHHHHTTCEEECTTSSEEEC---EEEEEEECTHHHHHHHHHHCBTTBCCCCTTSCSSSEEEEEC
T ss_pred --CcEEEEEEEeecccccccccCeEEECCCCCEeee---eEeeccHHHHHHHHHHHHhCCCceeEcCCcCCCCcEEEEec
Confidence 7889999997 99999999999999988875543 456777449999999998874 8999999999999999
Q ss_pred -C-c---chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCccccc
Q psy9574 547 -S-K---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINR 621 (783)
Q Consensus 547 -~-~---~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~ 621 (783)
+ + +..++|.+|++.|+++ ++|++|+++.++|+||++|++.|+||+|+||++|+++|+|+||+
T Consensus 291 ~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~~~~~~g~k~~~a~~~G~p~~iiiG~~el~~~~V~vr~------------ 357 (459)
T 1nj8_A 291 IFKGKEDIVMEKAKEIYEKLKGK-FRVHIDDRDIRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFR------------ 357 (459)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTT-SCEEECCSCSCHHHHHHHHHHTTCSEEEEECHHHHHTTEEEEEE------------
T ss_pred ccCCcHHHHHHHHHHHHHHHhhh-cEEEEECCCCCHHHHHHHHHHcCCCEEEEECcchhcCCEEEEEE------------
Confidence 5 4 6899999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 622 EIIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 622 ~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
+++.....++++++++.+.+.
T Consensus 358 -----------r~t~eq~~v~~~el~~~l~~~ 378 (459)
T 1nj8_A 358 -----------RDTMEKFQVDETQLMEVVEKT 378 (459)
T ss_dssp -----------TTTCCEEEEETTSHHHHHHHH
T ss_pred -----------CCCCceEEEeHHHHHHHHHHH
Confidence 555445789999998887643
No 11
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=2e-57 Score=529.62 Aligned_cols=384 Identities=20% Similarity=0.306 Sum_probs=308.4
Q ss_pred HhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCC
Q psy9574 236 KEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN 315 (783)
Q Consensus 236 ~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~ 315 (783)
++++.+||+.|++. ++ +++.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.|.++
T Consensus 16 ~~~~~~~h~~l~~~-g~--~~~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~ 92 (572)
T 2j3l_A 16 NDAEVLSHQILLRA-GY--IRQVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPN 92 (572)
T ss_dssp TTCCSHHHHHHHHT-TS--EEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTT
T ss_pred cccCCcCHHHHHhC-CC--ccccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchh
Confidence 57889999999997 54 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecC-chhHH
Q psy9574 316 MFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT-KSQIK 393 (783)
Q Consensus 316 my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~-~~~~~ 393 (783)
||++ |.++++++||||+|+++++++++++.||++||+|+||+|+|||+|++ +++||+|+|||+|+|+|+||. +++++
T Consensus 93 m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 93 LYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-SRSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp SCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CCTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred eEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-cccCccccceeEEeeeEEEcCCHHHHH
Confidence 9998 78899999999999999999999999999999999999999999997 599999999999999999999 56789
Q ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeecCCC-----------------------------------CCCC----------
Q psy9574 394 NEIVVFNELVHKVYNEFGFKKIKIKLALRPN-----------------------------------KRIG---------- 428 (783)
Q Consensus 394 ~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~-----------------------------------~~~g---------- 428 (783)
+|+.++++++.++|+.|||+ +.+.+++... .++.
T Consensus 172 ~e~~~~~~~~~~~~~~lgl~-~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (572)
T 2j3l_A 172 QSYRDYEKAYSRIFERCGLE-FRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQL 250 (572)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCc-EEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhccccccccccccc
Confidence 99999999999999999998 8887754110 0000
Q ss_pred ------Chh-----------------------------------------hHHHHHHHHH----------HHHHhc----
Q psy9574 429 ------ENN-----------------------------------------IWDLAENSLR----------EAISSS---- 447 (783)
Q Consensus 429 ------~~~-----------------------------------------~~~~~~~~l~----------~~l~~~---- 447 (783)
.++ .|.++.+.+. ++....
T Consensus 251 ~~~~~~~~~~~ti~~l~~~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~ 330 (572)
T 2j3l_A 251 DLEKIATPEVGTIAEVANFFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGF 330 (572)
T ss_dssp CCEEEECTTCCSHHHHHHHHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCT
T ss_pred ccceecCCCCCcHHHHHHHhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCc
Confidence 000 0221111110 011111
Q ss_pred ----------CCceeecC------------------------CCCCcccccEEEEeecCCCCe-eee-cceeee------
Q psy9574 448 ----------GVTWEEFP------------------------GEGAFYGPKIEYHLKDSIGRS-WQC-GTIQID------ 485 (783)
Q Consensus 448 ----------g~~~~~~~------------------------g~~~y~g~~~e~~~~d~~g~~-~~~-g~~~lD------ 485 (783)
++++.+++ |.++|++..+|+... ..|.. ..| |++++|
T Consensus 331 g~~~p~gl~~~i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~-~~G~~~~~~gg~~~~~~~ievg 409 (572)
T 2j3l_A 331 GSIGPVNVSEDVKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFV-QEGDPSPDGNGVLAFTKGIEIG 409 (572)
T ss_dssp TSCCSTTCCTTCEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCC-CTTCBCTTSSSBEEEEEEEEEE
T ss_pred cccCCccCCCCCcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHH-hcCCcccccCCcceeccceEEE
Confidence 12222222 344444444443211 11211 123 334443
Q ss_pred --cCc----ccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcC----CCCCCCCCCceEEEEecC---cchHH
Q psy9574 486 --FSM----PHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYS----GAMPLWLAPIQVMILNIS---KEQIE 552 (783)
Q Consensus 486 --~~~----~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~----~~~P~~lap~qv~Vi~~~---~~~~~ 552 (783)
|++ +++|+++|.+.+|+...|+|++.|+ |+||++++|+|++. ..||.|++|+||+|+|++ ++..+
T Consensus 410 ~~f~Lg~~ys~~~~~~~~~~~g~~~~p~~g~~gi--GveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~ 487 (572)
T 2j3l_A 410 HIFKLGTRYSDAMGATVLDENGREKSVIMGCYGI--GVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTK 487 (572)
T ss_dssp EEEEEETHHHHHHTCEEECTTSCEEECEEEEEEE--EHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHH
T ss_pred EEeccCcccccccCCEEECCCCcEEeeeeecccc--CHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHH
Confidence 555 4899999999999888999833232 59999999999874 489999999999999998 77899
Q ss_pred HHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEec
Q psy9574 553 YAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSG 632 (783)
Q Consensus 553 ~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~ 632 (783)
+|.+|++.||++|++|++|+++.++|+|+++|++.|+||+||||++| ++|+|+||+
T Consensus 488 ~a~~l~~~Lr~~gi~v~~d~~~~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~----------------------- 543 (572)
T 2j3l_A 488 LSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKI----------------------- 543 (572)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEE-----------------------
T ss_pred HHHHHHHHHHhCCCeEEEeCCCCCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEE-----------------------
Confidence 99999999999999999999989999999999999999999999999 999999999
Q ss_pred ccCcccccCCHHHHHHHHH
Q psy9574 633 IKNEPLGIVTLEKAFYLAE 651 (783)
Q Consensus 633 ~~g~~~~~~~~~~a~~~~~ 651 (783)
.++.....++++++++.++
T Consensus 544 ~~~~~q~~v~~~~l~~~l~ 562 (572)
T 2j3l_A 544 KRTGEMLEVRKEELESTLS 562 (572)
T ss_dssp TTTCCEEEEEHHHHHHHHH
T ss_pred cCCCcEEEEeHHHHHHHHH
Confidence 4444457899999988775
No 12
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=4.6e-57 Score=510.98 Aligned_cols=361 Identities=21% Similarity=0.287 Sum_probs=295.0
Q ss_pred HhhhcccHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCC
Q psy9574 236 KEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN 315 (783)
Q Consensus 236 ~~~~~~~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~ 315 (783)
++++.++|+.|++. + ++.+.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+||||+.|.++
T Consensus 36 ~~a~~~~h~ll~r~-g--~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~e 112 (458)
T 2i4l_A 36 KEAEIVSHRLMLRA-G--MLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPE 112 (458)
T ss_dssp TTCCSHHHHHHHHT-T--CEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTT
T ss_pred hhcCcchHHHHhhc-C--CeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccc
Confidence 57889999999999 5 45567999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc-hhHH
Q psy9574 316 MFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIK 393 (783)
Q Consensus 316 my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~ 393 (783)
||++ |.++++++||||+|+.++.+++..+.||++||+|+||+|+|||+|.+ |++||+|+|||+|.|+|+||.+ ++++
T Consensus 113 m~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~-p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 113 MLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR-PRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp SEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS-CBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred eEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC-CCCCcccccceEEeEEEEEECCHHHHH
Confidence 9999 78899999999999999999999999999999999999999999975 8999999999999999999954 5688
Q ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeecCCC------------CCCCChh----------hHHHHHH----HHHHHHHhc
Q psy9574 394 NEIVVFNELVHKVYNEFGFKKIKIKLALRPN------------KRIGENN----------IWDLAEN----SLREAISSS 447 (783)
Q Consensus 394 ~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~------------~~~g~~~----------~~~~~~~----~l~~~l~~~ 447 (783)
.++..+++++.++|+.|||+ +.+.+++... ...|.+. .|+.++. .+..+++..
T Consensus 192 ~e~~~~~~~~~~i~~~lGl~-~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~ 270 (458)
T 2i4l_A 192 KSYNKMFVAYLRTFARMGLK-AIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQW 270 (458)
T ss_dssp HHHHHHHHHHHHHHHTTTCC-EEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCc-eEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcC
Confidence 88888999999999999998 7777765421 1123221 1211110 112222221
Q ss_pred C-Cceee----cCCCC---CcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHH
Q psy9574 448 G-VTWEE----FPGEG---AFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLER 519 (783)
Q Consensus 448 g-~~~~~----~~g~~---~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieR 519 (783)
+ +.. . ..|.. .++++++...-....|..|++|+ .+|.+++.+|.+.+|+...|+++..| + +++|
T Consensus 271 ~~~~~-~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~-----~~s~~~g~ry~~~~G~~~p~~~~gfg-i-GveR 342 (458)
T 2i4l_A 271 TSVYA-ATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGT-----KYSDSMKANVTGPDGTDAPIHGGSYG-V-GVSR 342 (458)
T ss_dssp HHSCE-EETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEET-----HHHHHTTCEEECTTSCEEECEEEEEE-E-EHHH
T ss_pred chhhh-cChhhcccccccCCCCCcCceeeeeeccCcEEEecc-----cccccCCcEEECCCCCEeceEEeeec-c-cHHH
Confidence 1 111 1 12332 24566555433333566666654 45789999999887776444453322 2 4999
Q ss_pred HHHHHHHhcC----CCCCCCCCCceEEEEecC---cchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEE
Q psy9574 520 FIAILVENYS----GAMPLWLAPIQVMILNIS---KEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYI 592 (783)
Q Consensus 520 li~~LlE~~~----~~~P~~lap~qv~Vi~~~---~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~ 592 (783)
++++|+|+++ ..||.|++|+||+|+|++ ++..++|.++++.|+++|++|++|+++.++|+||++|+++|+||+
T Consensus 343 li~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ad~~g~p~~ 422 (458)
T 2i4l_A 343 LLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGIPWQ 422 (458)
T ss_dssp HHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHhcCCCEE
Confidence 9999999873 389999999999999996 678899999999999999999999998999999999999999999
Q ss_pred EEEcccccccCceeEEE
Q psy9574 593 IIVGNKELCENKITERE 609 (783)
Q Consensus 593 iivG~~e~~~~~V~vr~ 609 (783)
||||++|+++|+|+||+
T Consensus 423 iivG~~e~~~g~v~vr~ 439 (458)
T 2i4l_A 423 IHVGPRGLAEGKVELKR 439 (458)
T ss_dssp EEECHHHHTTTEEEEEE
T ss_pred EEECCchhhCCEEEEEE
Confidence 99999999999999999
No 13
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1e-53 Score=483.50 Aligned_cols=352 Identities=15% Similarity=0.210 Sum_probs=297.2
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CC-cccCCCCceEe-eeC-CceEEEcCCCc
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GH-WENYKDNMFTT-KSE-NRFYALKPMNC 333 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~-~~~~~~~my~~-~~~-~~~~~LrP~~~ 333 (783)
.++|++||+|.++++++.|++++++.+.++||++|.||+|++.++|.++ || |+.+.++||++ |.+ |+.++||||+|
T Consensus 34 ~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t 113 (467)
T 4e51_A 34 GVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENT 113 (467)
T ss_dssp CCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSH
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccH
Confidence 4899999999999999999999999999999999999999999999997 99 88899999998 788 99999999999
Q ss_pred HHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 334 PGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 334 ~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++++++++.+..+| ++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.+++..+ .|++.++.++|+.||++
T Consensus 114 ~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~--~~~g--R~ReF~Q~d~ei~g~~~~~ad--aEvi~l~~~~l~~lGl~ 186 (467)
T 4e51_A 114 AAVVRAAIEHNMLY-DGPKRLWYIGPMFRHER--PQRG--RYRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWEDLGLT 186 (467)
T ss_dssp HHHHHHHHHTTTTT-TSCEEEEEEEEEECCCC--C-----CCSEEEEEEEEEETCCCSHHH--HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHccccc-CCCEEEEEEccEEccCC--CCCC--CcCceEEEEEEEEeCCChHHH--HHHHHHHHHHHHHcCCC
Confidence 99999999888888 79999999999999998 6778 999999999999999987655 78899999999999998
Q ss_pred eEEEEeecCCCC------------CC-------C---------------------ChhhHH--------------HHHHH
Q psy9574 414 KIKIKLALRPNK------------RI-------G---------------------ENNIWD--------------LAENS 439 (783)
Q Consensus 414 ~~~i~l~~~~~~------------~~-------g---------------------~~~~~~--------------~~~~~ 439 (783)
++.+.+|+++.. ++ . ..+.|. ...+.
T Consensus 187 ~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~~ 266 (467)
T 4e51_A 187 GIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEG 266 (467)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHHH
T ss_pred ceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHHH
Confidence 899999986410 00 0 000111 12367
Q ss_pred HHHHHHhcCCceeecCC----CCCcccccEEEEeecCCCC-eeeecceeeecCcccccCceeeecCCcccccEEEeeccc
Q psy9574 440 LREAISSSGVTWEEFPG----EGAFYGPKIEYHLKDSIGR-SWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAII 514 (783)
Q Consensus 440 l~~~l~~~g~~~~~~~g----~~~y~g~~~e~~~~d~~g~-~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~ 514 (783)
|.++|+..|++|.+++| .+||+|++||+. .+.+|+ ..+||+ ||||. |.+.+|+...|+| |+.
T Consensus 267 l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~-~~~~g~~~tI~~G--------GRYD~-Lv~~~g~~~~Pav---Gfa 333 (467)
T 4e51_A 267 LQRLLKANNVPFTINPRLVRGLDYYNLTVFEWV-TDKLGAQGTVAAG--------GRYDP-LIEQLGGKPTAAC---GWA 333 (467)
T ss_dssp HHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEE-ECC----CEEEEE--------EECTH-HHHHTTSSCCCEE---EEE
T ss_pred HHHHHHHcCCeEEEcCccccCccccCCeEEEEE-ECCCCCcceecCC--------CcHHH-HHHHhCCCCCCce---eeh
Confidence 88889999999999885 456666666654 566665 345555 99998 7888888889999 777
Q ss_pred ccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECC----CccHHHHHHHhhcCCCC
Q psy9574 515 GSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR----NEKIAYKIRLHSLEKLP 590 (783)
Q Consensus 515 G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~~k~~~A~~~gip 590 (783)
+++||++.+|.++ +.+|. ++|.||+|+|++++..++|.++++.||++|++|++|.+ +.++++|+++|++.|+|
T Consensus 334 ~gleRl~~~l~~~--~~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~ 410 (467)
T 4e51_A 334 MGIERILELLKEE--HLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAA 410 (467)
T ss_dssp EEHHHHHHHHHHT--TCCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhc--CCccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCC
Confidence 8899999999886 45665 79999999999999999999999999999999999998 79999999999999999
Q ss_pred EEEEEcccccccCceeEEEeeecCCCcccccccccceEEEeccc-Cc-----ccccCCHHHHHHHHHHhh
Q psy9574 591 YIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIK-NE-----PLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 591 ~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~-g~-----~~~~~~~~~a~~~~~~~~ 654 (783)
|+||||++|+++|+|+||++ .+ |. ....++++++++.+++..
T Consensus 411 ~~iiiG~~E~~~g~V~vk~~----------------------~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 411 FAVIFGEDEVTNGTASVKPL----------------------RGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp EEEEECHHHHHHTEEEEEEC-------------------------------CCCEEEEGGGHHHHHHHHH
T ss_pred EEEEECcchhhCCeEEEEEC----------------------CCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 99999999999999999994 44 41 347899999999887654
No 14
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=8.9e-54 Score=438.57 Aligned_cols=223 Identities=45% Similarity=0.758 Sum_probs=216.5
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLA 80 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~ 80 (783)
||+|++|||+.++++.|+|+.|+|+.++....+.+|+|+|||+++||++++..|+.|+|+++++++|+++||||++|||+
T Consensus 1 ~i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL~ 80 (224)
T 1tke_A 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLG 80 (224)
T ss_dssp CCEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhh
Q psy9574 81 YAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKII 160 (783)
Q Consensus 81 ~A~~~l~p~~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll 160 (783)
+|++++||++++.+++++++||||||+.+.++|++|+.+||++||++|++|+||++.+++++||+++|...|+++|++|+
T Consensus 81 ~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~ 160 (224)
T 1tke_A 81 HAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSIL 160 (224)
T ss_dssp HHHHHHSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCcEEEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHh
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecCccccCCCcccchhhhhccccc
Q psy9574 161 NL-IPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWS 223 (783)
Q Consensus 161 ~~-~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~g~~~~d~~~~~l~Ri~G~~~~ 223 (783)
+. ++.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||+||+++++||||||++|+
T Consensus 161 ~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 161 DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp HHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred ccccCCCCeeEEEEeCCEEEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 97 7555699999999999999999999999999999999999999999999999999999996
No 15
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=1.2e-53 Score=485.96 Aligned_cols=372 Identities=16% Similarity=0.168 Sum_probs=300.1
Q ss_pred cHHHHhhhcccccccc----cCCCceEeccChhHHHHHHHHHHHHHHH--HcCCeEeecCcccchHHHhhhCCcccCCCC
Q psy9574 242 DHRKLGKQLNLFHFQE----ESPGLIFWHPKGYIILQEIKKYMRKIYK--YNGYKEIKTPQMLDLSLWKKTGHWENYKDN 315 (783)
Q Consensus 242 ~h~~l~~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~~~~~~--~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~ 315 (783)
.+..|++..|++.... ..+|+++|+|.|++++++|+++|++.+. ++||++|.||+|++.++|++||||+.|.++
T Consensus 7 ~~~~l~~r~g~i~~~~ei~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~ 86 (505)
T 1ati_A 7 ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADP 86 (505)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEE
T ss_pred HHHHHHHHCCCEEcchhhcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcc
Confidence 3678888888654332 2499999999999999999999999999 999999999999999999999999999999
Q ss_pred ceEee------------------------------------------e-------------------C------------
Q psy9574 316 MFTTK------------------------------------------S-------------------E------------ 322 (783)
Q Consensus 316 my~~~------------------------------------------~-------------------~------------ 322 (783)
||++. . +
T Consensus 87 m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fn 166 (505)
T 1ati_A 87 MVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFN 166 (505)
T ss_dssp EEEC--------------------------------------------------------------------CCCCEEEE
T ss_pred ceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhh
Confidence 88720 1 1
Q ss_pred -------------CceEEEcCCCcHHHHHHHhcccccC-CCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecC
Q psy9574 323 -------------NRFYALKPMNCPGHIQIYNSNFHSY-RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT 388 (783)
Q Consensus 323 -------------~~~~~LrP~~~~~~~~~~~~~~~s~-~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~ 388 (783)
++.++|||++|++++..|++.+.|| ++||+++||+|+|||+|.+ |++||+|+|||+|.|+|+||+
T Consensus 167 lmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~-pr~GL~R~REF~q~d~~~f~~ 245 (505)
T 1ati_A 167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEYFVR 245 (505)
T ss_dssp CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS-CCTGGGSCSEEEEEEEEEEEC
T ss_pred hhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCC-CCCCCCcccceEEeeEEEEEC
Confidence 3568999999999999999889999 9999999999999999987 999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCC--CChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEE
Q psy9574 389 KSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRI--GENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIE 466 (783)
Q Consensus 389 ~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~--g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e 466 (783)
++++.+++.+++.++.++|+.|||++..+.+++.+...+ ++...|+.. ++... .+.... +..+++.++
T Consensus 246 ~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E------~~~p~--~~~e~~--g~~~~~d~~ 315 (505)
T 1ati_A 246 PGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDIL------YRFPH--GSLELE--GIAQRTDFD 315 (505)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEE------EEETT--EEEEEE--EEEECTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHH------hhcCC--CCccch--hhhccccee
Confidence 999999999999999999999999877777776643322 455555410 00000 000000 111122111
Q ss_pred EEee-cCCCCeeeecceeeecCcccccCceeeecCCccc-ccEEEeecccccHHHHHHHHHHhc--------CC-----C
Q psy9574 467 YHLK-DSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRK-TPVMLHRAIIGSLERFIAILVENY--------SG-----A 531 (783)
Q Consensus 467 ~~~~-d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~-~p~~i~~~~~G~ieRli~~LlE~~--------~~-----~ 531 (783)
.... ...|..+ .+.++|++.+.|++++|.+.+|+.. .|++++ +++| ++|++++|+|++ ++ .
T Consensus 316 L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y~d~~g~~~y~p~vig-~s~G-ieRli~alle~~~~~~~~~~gd~~~gl~ 391 (505)
T 1ati_A 316 LGSHTKDQEALG--ITARVLRNEHSTQRLAYRDPETGKWFVPYVIE-PSAG-VDRGVLALLAEAFTREELPNGEERIVLK 391 (505)
T ss_dssp HHHHCSSTTTTT--CCSCCCCCSCCCSCCCEECSSSCCEECCEEEE-EEEE-HHHHHHHHHHHHEEEEECTTSCEEEEEC
T ss_pred cchhhccccccc--eeeeecccccceeEEEEEcCCCCeeecceEEE-EeeE-HHHHHHHHHHHHhhhccccccccccccc
Confidence 1000 0012222 2456788888999999999888765 787877 5667 899999999875 22 6
Q ss_pred CCCCCCCceEEEEecCc---chHHHHHHHHHHhHhCC-CeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccc------
Q psy9574 532 MPLWLAPIQVMILNISK---EQIEYAKKVFNFLKSKK-FRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELC------ 601 (783)
Q Consensus 532 ~P~~lap~qv~Vi~~~~---~~~~~a~~i~~~Lr~~g-i~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~------ 601 (783)
||+|++|+||+|+|+++ +..++|.+|++.||++| ++|++|++ .++|+|+++|+++|+||+||||++|++
T Consensus 392 ~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~-~sig~k~~~ad~~g~p~~iivG~~el~~~~~~~ 470 (505)
T 1ati_A 392 LKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT-GNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGT 470 (505)
T ss_dssp CCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-SCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSC
T ss_pred CCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-CCHHHHHHHHHHCCCCEEEEEChHHhhhccccc
Confidence 99999999999999987 78999999999999999 99999998 899999999999999999999999999
Q ss_pred ---cCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 602 ---ENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 602 ---~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
+|+|+||+ +++.....++++++++.+.+
T Consensus 471 ~~~~g~V~vr~-----------------------r~t~~q~~v~~~el~~~l~~ 501 (505)
T 1ati_A 471 TRLKDTVTVRD-----------------------RDTMEQIRLHVDELEGFLRE 501 (505)
T ss_dssp CTTTTEEEEEE-----------------------TTTCCEEEEEHHHHHHHHHH
T ss_pred cccCCEEEEEE-----------------------CCCCceEEEEHHHHHHHHHH
Confidence 99999999 55555589999999988764
No 16
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=2.1e-52 Score=470.16 Aligned_cols=351 Identities=18% Similarity=0.282 Sum_probs=284.5
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh--CCcccCCCCceEe-eeCCceEEEcCCCc
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT--GHWENYKDNMFTT-KSENRFYALKPMNC 333 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s--g~~~~~~~~my~~-~~~~~~~~LrP~~~ 333 (783)
+.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.++ |||+.|.++||++ |.+|+.++||||+|
T Consensus 3 ~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t 82 (420)
T 1qe0_A 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGT 82 (420)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSH
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCCh
Confidence 35899999999999999999999999999999999999999999999998 8999999999998 78899999999999
Q ss_pred HHHHHHHhcccccC-CCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCC
Q psy9574 334 PGHIQIYNSNFHSY-RDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGF 412 (783)
Q Consensus 334 ~~~~~~~~~~~~s~-~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl 412 (783)
++++++++++..+| ++||+|+||+|+|||+|+ |+.| |+|||+|.|+|+||.+++..+ .+++.++.++|+.||+
T Consensus 83 ~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~--~~~g--R~reF~q~~~e~~~~~~~~~d--~e~i~~~~~~l~~lgl 156 (420)
T 1qe0_A 83 AAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYER--KQKG--RYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQSFGL 156 (420)
T ss_dssp HHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHH--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccccccCCCCeEEEEecCEeecCC--CcCC--CcccEEEeeEEEECCCCchhH--HHHHHHHHHHHHHcCC
Confidence 99999999888888 999999999999999996 6667 999999999999999987555 7789999999999999
Q ss_pred eeEEEEeecCCC------------CCC----------------------------CChhhHHHH--------------HH
Q psy9574 413 KKIKIKLALRPN------------KRI----------------------------GENNIWDLA--------------EN 438 (783)
Q Consensus 413 ~~~~i~l~~~~~------------~~~----------------------------g~~~~~~~~--------------~~ 438 (783)
+.+.+.+++... .++ +..+.|+.+ .+
T Consensus 157 ~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~ 236 (420)
T 1qe0_A 157 KHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYE 236 (420)
T ss_dssp CCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHH
T ss_pred CceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHH
Confidence 889999986210 000 112224311 25
Q ss_pred HHHHHHHhcCCceeecCC----CCCcccccEEEEeecCC---CCe-eeecceeeecCcccccCceeeecCCcccccEEEe
Q psy9574 439 SLREAISSSGVTWEEFPG----EGAFYGPKIEYHLKDSI---GRS-WQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLH 510 (783)
Q Consensus 439 ~l~~~l~~~g~~~~~~~g----~~~y~g~~~e~~~~d~~---g~~-~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~ 510 (783)
.+.++|+..|+++.++++ .++|+|.+||+. .+.. |+. .++++ +|||. +.+.+|+...|+|
T Consensus 237 ~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~~-~~~~~~~g~~~~i~~G--------gRYd~-l~~~~g~~~~P~v-- 304 (420)
T 1qe0_A 237 QVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELM-MDNPNYDGAITTLCGG--------GRYNG-LLELLDGPSETGI-- 304 (420)
T ss_dssp HHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEEE-EECTTSTTSEEEEEEE--------EEEES-HHHHTTCCCCEEE--
T ss_pred HHHHHHHHcCCeEEECcccccchhhhcCeEEEEE-EcCCCCCCCcCccccC--------ccHHH-HHHHhCCCCCCEE--
Confidence 677788888998888875 567778888984 4444 542 33443 99998 7888887789998
Q ss_pred ecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCC
Q psy9574 511 RAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLP 590 (783)
Q Consensus 511 ~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip 590 (783)
|+.++++|++++| |+++..||. ++|+||+|+|++++..++|.++++.||++|++|++|+++.++++|+++|++.|+|
T Consensus 305 -g~~igveRl~~~l-e~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~p 381 (420)
T 1qe0_A 305 -GFALSIERLLLAL-EEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAK 381 (420)
T ss_dssp -EEEEEHHHHHHHH-HHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHHHHHHHHTTCS
T ss_pred -EEEecHHHHHHHH-HhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCCC
Confidence 5556699999987 776668998 8999999999988888999999999999999999999889999999999999999
Q ss_pred EEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHH
Q psy9574 591 YIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAE 651 (783)
Q Consensus 591 ~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~ 651 (783)
|+|+||++|+++|+|+||+ .++.....++++++++.++
T Consensus 382 ~~iiig~~e~~~~~v~vk~-----------------------~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 382 FTIVIGDQELENNKIDVKN-----------------------MTTGESETIELDALVEYFK 419 (420)
T ss_dssp EEEEECHHHHHHTCEEEEE-----------------------TTTCCEEEECTTHHHHHHH
T ss_pred EEEEECcchhhcCeEEEEE-----------------------CCCCCeEEEcHHHHHHHHh
Confidence 9999999999999999999 4444457899999887664
No 17
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=3e-52 Score=487.55 Aligned_cols=385 Identities=16% Similarity=0.210 Sum_probs=283.3
Q ss_pred HHHHhhhcccccccc----cCCCceEeccChhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCce
Q psy9574 243 HRKLGKQLNLFHFQE----ESPGLIFWHPKGYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMF 317 (783)
Q Consensus 243 h~~l~~~l~l~~~~~----~~~G~~~~lP~g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my 317 (783)
-..|++..+++.... .++|++||+|.|++++++|+++|++.+. ..||++|.||+|++.+||++||||+.|.+.|+
T Consensus 70 ~~~l~~r~gf~~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~ 149 (693)
T 2zt5_A 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMV 149 (693)
T ss_dssp HHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEE
T ss_pred HHHHHHhCCCcccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccce
Confidence 345666656433221 1599999999999999999999999998 56999999999999999999999999998666
Q ss_pred Ee---------ee-------------------------------------------------------------------
Q psy9574 318 TT---------KS------------------------------------------------------------------- 321 (783)
Q Consensus 318 ~~---------~~------------------------------------------------------------------- 321 (783)
.+ |.
T Consensus 150 ~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~ 229 (693)
T 2zt5_A 150 KDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFK 229 (693)
T ss_dssp EBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCE
T ss_pred eeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeee
Confidence 32 11
Q ss_pred ------CCceEEEcCCCcHHHHHHHhccccc-CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHH-
Q psy9574 322 ------ENRFYALKPMNCPGHIQIYNSNFHS-YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIK- 393 (783)
Q Consensus 322 ------~~~~~~LrP~~~~~~~~~~~~~~~s-~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~- 393 (783)
+++.++|||+++++++.+|++.+.+ |++||+++||+|++||||.+ |++||+|+|||+|+|+|+||.+++..
T Consensus 230 t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEis-Pr~GLlR~REF~q~d~e~F~~p~~~~~ 308 (693)
T 2zt5_A 230 TFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEIS-PRSGLIRVREFTMAEIEHFVDPSEKDH 308 (693)
T ss_dssp EECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSS-CCSGGGSCSEEEEEEEEEEECTTCCCC
T ss_pred ccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCC-CCCCCccceeeEEccceEEeCcchhcc
Confidence 4578999999999999999988886 79999999999999999987 99999999999999999999987642
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHhhcCCeeEEEEeecCCC--CCCCCh
Q psy9574 394 -----------------------------------------NEIVVFNELVHKVYNEFGFKKIKIKLALRPN--KRIGEN 430 (783)
Q Consensus 394 -----------------------------------------~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~--~~~g~~ 430 (783)
+++..++.++.++|..||++...+.+..++. ...++.
T Consensus 309 ~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~ 388 (693)
T 2zt5_A 309 PKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYAC 388 (693)
T ss_dssp TTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCS
T ss_pred hhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchh
Confidence 5567789999999999999765566555421 122222
Q ss_pred hhH--------------HH---HHHHHHHHHHhcCCceee---------------cCCCCCcccccEEE---EeecCCCC
Q psy9574 431 NIW--------------DL---AENSLREAISSSGVTWEE---------------FPGEGAFYGPKIEY---HLKDSIGR 475 (783)
Q Consensus 431 ~~~--------------~~---~~~~l~~~l~~~g~~~~~---------------~~g~~~y~g~~~e~---~~~d~~g~ 475 (783)
+.| .. +...|...+..+|.++.+ .+|.+++ |+++.. .+.|.++.
T Consensus 389 ~~~d~e~~~~~g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~~ 467 (693)
T 2zt5_A 389 DCWDAESKTSYGWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLAI 467 (693)
T ss_dssp SEEEEEEEETTEEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC-------------------------------------
T ss_pred hhhhehhhccCChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhhh
Confidence 222 21 225778888888877653 4566666 776653 33444444
Q ss_pred eee------------ecc--eeee---cCccc-ccCce-e-eecCCcccccEEEeecccccHHHHHHHHHHh-cC-----
Q psy9574 476 SWQ------------CGT--IQID---FSMPH-RLGAE-Y-IAENNTRKTPVMLHRAIIGSLERFIAILVEN-YS----- 529 (783)
Q Consensus 476 ~~~------------~g~--~~lD---~~~~~-r~d~~-y-~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~-~~----- 529 (783)
.++ +|+ +++| |.++. ++++. | ....|++..|+|||+ ++| ++|++++|+|+ +.
T Consensus 468 ~~~~~~~~l~~~L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~-s~G-igRli~aLie~~~~~~~~~ 545 (693)
T 2zt5_A 468 CDECYITEMEMLLNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEP-SFG-LGRIMYTVFEHTFHVREGD 545 (693)
T ss_dssp --------------------------------------------CCEEECCEEEEE-EEE-HHHHHHHHHHHHEEECSST
T ss_pred hhHHHHHHHHHHHHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCcceeC-eeh-HHHHHHHHHHHhccccccc
Confidence 332 232 2333 55432 22221 2 234577778999995 457 99999999997 32
Q ss_pred -----CCCCCCCCCceEEEEecCcc--hHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEccccc--
Q psy9574 530 -----GAMPLWLAPIQVMILNISKE--QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKEL-- 600 (783)
Q Consensus 530 -----~~~P~~lap~qv~Vi~~~~~--~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~-- 600 (783)
..||+|+||+||+|+|++++ ..++|.+|++.||++|++|++|+++.++|+|+++|+++|+||+||||++|+
T Consensus 546 ~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~~ 625 (693)
T 2zt5_A 546 EQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNK 625 (693)
T ss_dssp TCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTS
T ss_pred cccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhc
Confidence 38999999999999999865 899999999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 601 CENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 601 ~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
++|+|+||+ +++.....++++++++.+++..
T Consensus 626 ~~g~Vtvr~-----------------------r~t~eq~~v~l~el~~~l~~~l 656 (693)
T 2zt5_A 626 TPHTATLRD-----------------------RDSMRQIRAEISELPSIVQDLA 656 (693)
T ss_dssp SSCEEEEEE-----------------------TTTCCEEEEETTTHHHHHHHHH
T ss_pred cCCEEEEEE-----------------------CCCCceEEEeHHHHHHHHHHHH
Confidence 999999999 5554558999999998886543
No 18
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=3.9e-50 Score=451.74 Aligned_cols=351 Identities=19% Similarity=0.206 Sum_probs=292.3
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CC-cccCCCCceEe-eeCCceEEEcCCCc
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GH-WENYKDNMFTT-KSENRFYALKPMNC 333 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~-~~~~~~~my~~-~~~~~~~~LrP~~~ 333 (783)
+.++|+++|+|.+++++++|++.+++.|.++||++|.||+|++.++|.++ |+ |+.+.++||++ |++|+.++||||.|
T Consensus 4 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 83 (421)
T 1h4v_B 4 RAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGT 83 (421)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcch
Confidence 35899999999999999999999999999999999999999999999997 88 89999999998 88999999999999
Q ss_pred HHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 334 PGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 334 ~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++++++++.+..+++++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.+++..+ .+++.++.++|+.||++
T Consensus 84 ~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~--p~~g--R~REf~Q~g~e~~g~~~~~ad--~e~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 84 AAMVRAYLEHGMKVWPQPVRLWMAGPMFRAER--PQKG--RYRQFHQVNYEALGSENPILD--AEAVVLLYECLKELGLR 157 (421)
T ss_pred HHHHHHHHhccccccCCCeEEEEecCeecCCC--CCCC--CcccEEEccEEEECCCChhhh--HHHHHHHHHHHHHcCCC
Confidence 99999998776688899999999999999996 7888 999999999999999876444 56799999999999998
Q ss_pred eEEEEeecCCC------------CCCC------ChhhHHH-----------------------------------H---H
Q psy9574 414 KIKIKLALRPN------------KRIG------ENNIWDL-----------------------------------A---E 437 (783)
Q Consensus 414 ~~~i~l~~~~~------------~~~g------~~~~~~~-----------------------------------~---~ 437 (783)
++.+.+|+... .++. +++.|+. + .
T Consensus 158 ~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l 237 (421)
T 1h4v_B 158 RLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHL 237 (421)
T ss_pred ceEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHHHHH
Confidence 89999987421 0000 0111110 0 1
Q ss_pred HHHHHHHHhcCCceeecC----CCCCcccccEEEEeecCCCC-eeeecceeeecCcccccCceeeecCCcccccEEEeec
Q psy9574 438 NSLREAISSSGVTWEEFP----GEGAFYGPKIEYHLKDSIGR-SWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRA 512 (783)
Q Consensus 438 ~~l~~~l~~~g~~~~~~~----g~~~y~g~~~e~~~~d~~g~-~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~ 512 (783)
+.+.+.|...|+.+.+++ |.+||+|.+||+.. +..|. ..+||| +|||-. ....|+...|+| |
T Consensus 238 ~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~-~~~g~~~~v~~G--------GRYd~l-~~~fgg~~~pa~---G 304 (421)
T 1h4v_B 238 KEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHH-EEIGAQSALGGG--------GRYDGL-SELLGGPRVPGV---G 304 (421)
T ss_pred HHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEe-cCCCCcCccccC--------CcHHHH-HHHhCCCCCCeE---E
Confidence 223344555677776665 67899999999864 33332 356777 999963 455666678988 4
Q ss_pred ccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEE
Q psy9574 513 IIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYI 592 (783)
Q Consensus 513 ~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~ 592 (783)
+..+++|++++|.|+ +.+|+|.+|+||+|+|++++..++|.++++.||++ ++|++|+++.++++|+++|++.|+||+
T Consensus 305 f~igieRl~~~l~e~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~~~~a~~~g~p~~ 381 (421)
T 1h4v_B 305 FAFGVERVALALEAE--GFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLEEALKRGAAFA 381 (421)
T ss_pred EeecHHHHHHHHHhc--CcCCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHHHHHHHhCCCCEE
Confidence 444599999999886 55666789999999999988899999999999999 999999998999999999999999999
Q ss_pred EEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 593 IIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 593 iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
|+||++|+++|+|+||++ .+|+ ...++++++++.+++
T Consensus 382 iivG~~e~~~~~v~vk~~----------------------~~~~-~~~v~~~el~~~l~~ 418 (421)
T 1h4v_B 382 GFLGEDELRAGEVTLKRL----------------------ATGE-QVRLSREEVPGYLLQ 418 (421)
T ss_pred EEECchHhhcCcEEEEEC----------------------CCCC-ceEECHHHHHHHHHH
Confidence 999999999999999994 4454 478999999888754
No 19
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=2.6e-50 Score=453.40 Aligned_cols=351 Identities=15% Similarity=0.222 Sum_probs=289.7
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CC-cccCCCCceEe-eeCCceEEEcCCCc
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GH-WENYKDNMFTT-KSENRFYALKPMNC 333 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~-~~~~~~~my~~-~~~~~~~~LrP~~~ 333 (783)
+.++|+++|+|.+++++++|++.++++|.++||++|.||+|++.++|.++ |+ |+.+.++||++ |++|+.++||||.|
T Consensus 5 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t 84 (423)
T 1htt_A 5 QAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGT 84 (423)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSH
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCch
Confidence 45899999999999999999999999999999999999999999999987 88 88899999998 88999999999999
Q ss_pred HHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCC-
Q psy9574 334 PGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGF- 412 (783)
Q Consensus 334 ~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl- 412 (783)
++++++++.+ .+++++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.+++..+ .+++.++.++|+.||+
T Consensus 85 ~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~--p~~g--R~Ref~Q~d~e~~g~~~~~ad--~e~i~~~~~~l~~lgl~ 157 (423)
T 1htt_A 85 AGCVRAGIEH-GLLYNQEQRLWYIGPMFRHER--PQKG--RYRQFHQLGCEVFGLQGPDID--AELIMLTARWWRALGIS 157 (423)
T ss_dssp HHHHHHHHHH-TCSTTCCEEEEEEEEEECCCC--CCSS--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhc-ccccCCCeEEEEEcCEecCCC--CCCC--ccceeEEeeEEEECCCCchhh--HHHHHHHHHHHHHCCCC
Confidence 9999999865 357899999999999999996 7888 999999999999998876443 5679999999999999
Q ss_pred eeEEEEeecCCC------------CCCCC--hhhHH-------------------------------------HHH---H
Q psy9574 413 KKIKIKLALRPN------------KRIGE--NNIWD-------------------------------------LAE---N 438 (783)
Q Consensus 413 ~~~~i~l~~~~~------------~~~g~--~~~~~-------------------------------------~~~---~ 438 (783)
+++.+.+++... .+++. +..|+ .+. +
T Consensus 158 ~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~~~~~l~ 237 (423)
T 1htt_A 158 EHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFA 237 (423)
T ss_dssp GGCEEEEEECCCHHHHHHC---------------------------------------------------CCHHHHHHHH
T ss_pred CCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHHHHHHHH
Confidence 678888887420 11110 00010 011 2
Q ss_pred HHHHHHHhcCCceeecC----CCCCcccccEEEEeecCCCC-eeeecceeeecCcccccCceeeecCCcccccEEEeecc
Q psy9574 439 SLREAISSSGVTWEEFP----GEGAFYGPKIEYHLKDSIGR-SWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAI 513 (783)
Q Consensus 439 ~l~~~l~~~g~~~~~~~----g~~~y~g~~~e~~~~d~~g~-~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~ 513 (783)
.+.+.|+..|+.+.+++ |.+||+|.+||+.. +..|. ..+||| +|||-. ....|+...|++ |+
T Consensus 238 ~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~-~~~g~~~~v~~G--------GRYD~l-~~~fgg~~~pav---Gf 304 (423)
T 1htt_A 238 GLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVT-NSLGSQGTVCAG--------GRYDGL-VEQLGGRATPAV---GF 304 (423)
T ss_dssp HHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEEC-C----CCEEEEE--------EECTTH-HHHTTSCCCCEE---EE
T ss_pred HHHHHHHHcCCeEEEccccccchHHHcCceEEEEe-CCCCCcCCcCCC--------ccHHHH-HHHhCCCCCCeE---EE
Confidence 34455666788777765 67899999999864 33332 356777 999963 445666678988 43
Q ss_pred cccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhC--CCeEEEECCCccHHHHHHHhhcCCCCE
Q psy9574 514 IGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSK--KFRVEVDLRNEKIAYKIRLHSLEKLPY 591 (783)
Q Consensus 514 ~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~--gi~v~~d~~~~~l~~k~~~A~~~gip~ 591 (783)
..++||++++|.|+ +.+|+|.+|+||+|+|++++..++|.++++.||++ |++|++|+++.++++|+++|++.|+||
T Consensus 305 ~igveRl~~~l~e~--~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~~~~a~~~g~p~ 382 (423)
T 1htt_A 305 AMGLERLVLLVQAV--NPEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARV 382 (423)
T ss_dssp EEEHHHHHHHHHHH--STTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHHHHHHHHHTCSE
T ss_pred EecHHHHHHHHHhc--CcCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHHHHHHHHcCCCE
Confidence 33599999999987 45666789999999999988899999999999999 999999999899999999999999999
Q ss_pred EEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHH
Q psy9574 592 IIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEK 652 (783)
Q Consensus 592 ~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~ 652 (783)
+|+||++|+++|+|+||++ .+|+ ...++++++++.+++
T Consensus 383 ~iiiG~~e~~~~~v~vk~~----------------------~~~~-~~~v~~~el~~~l~~ 420 (423)
T 1htt_A 383 AVVLGESEVANGTAVVKDL----------------------RSGE-QTAVAQDSVAAHLRT 420 (423)
T ss_dssp EEEECHHHHHHTEEEEEET----------------------TTCC-EEEEEHHHHHHHHHH
T ss_pred EEEECchhhhcCeEEEEEC----------------------CCCC-ceEEcHHHHHHHHHH
Confidence 9999999999999999993 4444 478999999888764
No 20
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-50 Score=446.07 Aligned_cols=324 Identities=12% Similarity=0.050 Sum_probs=256.9
Q ss_pred CCCce-EeccChhHHHHHHHHHHHHHHH-HcC-CeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHH
Q psy9574 259 SPGLI-FWHPKGYIILQEIKKYMRKIYK-YNG-YKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPG 335 (783)
Q Consensus 259 ~~G~~-~~lP~g~~l~~~l~~~~~~~~~-~~G-~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~ 335 (783)
.+|.+ +|+|+|+.|+++|++.|+..+. +.| +.+|+||. .++|+.||||++|. ++||||+|++
T Consensus 92 ~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~------------~~LRPeTaqg 156 (459)
T 3ikl_A 92 LSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR------------GGLRENLLHG 156 (459)
T ss_dssp HTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT------------TB-CSCSHHH
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc------------ceECCCCChh
Confidence 45666 9999999999999996666554 466 77799999 56699999999987 8999999999
Q ss_pred HHHHHhcccccCC-CCCceEEEecceeecCC--CCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCC
Q psy9574 336 HIQIYNSNFHSYR-DLPLRFGEFGQCHRNES--SGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGF 412 (783)
Q Consensus 336 ~~~~~~~~~~s~~-~LPlr~~~~g~~fR~E~--~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl 412 (783)
++..|++.+.||+ +||++++|+|+|||+|. +++.+||+|+|||+|.|+|+||.|+++.+++..++..+..+|+.||+
T Consensus 157 ~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi 236 (459)
T 3ikl_A 157 ALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAM 236 (459)
T ss_dssp HHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999 99999999999999997 46999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeecceeeecCccc--
Q psy9574 413 KKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPH-- 490 (783)
Q Consensus 413 ~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~-- 490 (783)
+...+.+...+.. . +.....+|+.++...+..+.|+ +..||++..
T Consensus 237 ~~~~~r~~~~~~e-------------------------------e-A~~~~DiE~~~p~G~~E~~g~s-n~tDfqL~~~~ 283 (459)
T 3ikl_A 237 SPSNFSSSDCQDE-------------------------------E-GRKGNKLYYNFPWGKELIETLW-NLGDHELLHMY 283 (459)
T ss_dssp SGGGEEEEEECCS-------------------------------S-SSCEEEEEEECSSCEEEEEEEE-EEETHHHHHHS
T ss_pred ChhhEEEeecCch-------------------------------H-HHhhcCeEEEcCCceEEEeeee-ccchhhhhccc
Confidence 7433333222110 0 1122345666654222222222 257888744
Q ss_pred -ccCceeeecCCc-ccccEEEeecccccHHHHHHHHHHh-cC----------------CCCCCCCCCceEEEEecC---c
Q psy9574 491 -RLGAEYIAENNT-RKTPVMLHRAIIGSLERFIAILVEN-YS----------------GAMPLWLAPIQVMILNIS---K 548 (783)
Q Consensus 491 -r~d~~y~~~~g~-~~~p~~i~~~~~G~ieRli~~LlE~-~~----------------~~~P~~lap~qv~Vi~~~---~ 548 (783)
+++..|.+.+|+ +..|+|+| .++| ++|++++++|+ |. ..||+||||+||.|++.. +
T Consensus 284 ~~~~~~~~~~dg~~k~~P~vi~-~s~G-v~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e 361 (459)
T 3ikl_A 284 PGNVSKLHGRDGRKNVVPCVLS-VNGD-LDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTL 361 (459)
T ss_dssp CSCSSSSCCBSSSCBCCCEEEE-EEEE-HHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCST
T ss_pred cccCceeEccCCCeeeeeEEEE-eccc-HHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCH
Confidence 566677888874 56799998 4445 99998888876 43 389999999999999442 6
Q ss_pred chHHHHHHHHHHhHhCCCeEE--EECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCccccccccc
Q psy9574 549 EQIEYAKKVFNFLKSKKFRVE--VDLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIA 625 (783)
Q Consensus 549 ~~~~~a~~i~~~Lr~~gi~v~--~d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~ 625 (783)
+..++|.+|++.|+++||+|+ +|++ +.++|+||++|+++|+||+||||++|+++|+|+||+
T Consensus 362 ~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~---------------- 425 (459)
T 3ikl_A 362 ELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRS---------------- 425 (459)
T ss_dssp THHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEE----------------
T ss_pred HHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEE----------------
Confidence 789999999999999999999 8888 899999999999999999999999999999999999
Q ss_pred ceEEEecccCcccccCCHHHHHHHHHHhhh
Q psy9574 626 PELRLSGIKNEPLGIVTLEKAFYLAEKENV 655 (783)
Q Consensus 626 ~~v~li~~~g~~~~~~~~~~a~~~~~~~~~ 655 (783)
+++.....|+++++++.+.+...
T Consensus 426 -------Rdtgeq~~v~ldeli~~l~~~i~ 448 (459)
T 3ikl_A 426 -------RDTTMKEMMHISKLKDFLIKYIS 448 (459)
T ss_dssp -------TTTCCCCCEETTHHHHHHHHHHH
T ss_pred -------CCCCceEEEEHHHHHHHHHHHHh
Confidence 66555689999999988876543
No 21
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=3.5e-51 Score=458.40 Aligned_cols=370 Identities=11% Similarity=0.036 Sum_probs=274.1
Q ss_pred hhhccccccchhhHHHHHHHHhhhcccHHHHhhhcccccccccC-------CCce-EeccChhHHHHHHHHHHHHHH--H
Q psy9574 216 RIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEES-------PGLI-FWHPKGYIILQEIKKYMRKIY--K 285 (783)
Q Consensus 216 Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~~-------~G~~-~~lP~g~~l~~~l~~~~~~~~--~ 285 (783)
++-|++||..+++... ...+..|++..++|...... +|++ +|+|.|+.|+++|+++|++.+ .
T Consensus 8 ~~~~~~~~~~~~~~~~--------~~~~~~l~krrgf~~~s~eiy~g~~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~ 79 (454)
T 1g5h_A 8 PADGTQQPDAPEHAVA--------REALVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVVF 79 (454)
T ss_dssp -------------------------CHHHHHHHHTTSBCCCGGGGSHHHHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCChhHHHHH--------HHHHHHHHHHcCCccccchhcccCCCCCcceeeeCchHHHHHHHHHHHHHHHHhhh
Confidence 3345778887775421 23477888888865433222 3777 999999999999999888885 5
Q ss_pred HcCCeEeecCcccchHHHhhh--CC---cccCCCC----------ceEe--eeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 286 YNGYKEIKTPQMLDLSLWKKT--GH---WENYKDN----------MFTT--KSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 286 ~~G~~ev~tP~l~~~~l~~~s--g~---~~~~~~~----------my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
+.||++|+||++.+.++|+++ || ||+|.++ ||.+ +..++.++||||+|++++.+|++.++||+
T Consensus 80 ~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r 159 (454)
T 1g5h_A 80 REQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEHYVNCLDLVN 159 (454)
T ss_dssp CTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTT
T ss_pred cCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHHHhhhHhhcc
Confidence 899999999999999999987 88 9998765 4433 22356899999999999999999999888
Q ss_pred -CCCceEEEecceee---cCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC
Q psy9574 349 -DLPLRFGEFGQCHR---NESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN 424 (783)
Q Consensus 349 -~LPlr~~~~g~~fR---~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~ 424 (783)
+||++++|+|+||| ||.+ |++||+|+|||+|.|+|+||.++++.+++..++..+..+|..||++...+....
T Consensus 160 ~~LP~~~aqig~~fR~~~nE~s-~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~--- 235 (454)
T 1g5h_A 160 RKLPFGLAQIGVCFHPVSNSNQ-TPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSAD--- 235 (454)
T ss_dssp TBSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEE---
T ss_pred cCCCEEEEEeeeeccCCccccc-CCCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecC---
Confidence 99999999999999 6997 699999999999999999999999999999999999999999999743333321
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCeeeecceeeecCc-----ccccCceeeec
Q psy9574 425 KRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSM-----PHRLGAEYIAE 499 (783)
Q Consensus 425 ~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~-----~~r~d~~y~~~ 499 (783)
.|+.+ +..+..+|+.++...+....|. ...|+++ +.||+++|.+.
T Consensus 236 -------~~~~~----------------------a~~~~~ie~~~p~g~~e~~g~~-~~td~~l~~~~~~s~~~l~y~d~ 285 (454)
T 1g5h_A 236 -------CQDEL----------------------GRKGSKLYYSFPWGKEPIETLW-NLGDQELLHTYPGNVSTIQGRDG 285 (454)
T ss_dssp -------EECTT----------------------SCEEEEEEEEETTEEEEEEEEE-EEESHHHHHHSTTCGGGSCEEET
T ss_pred -------CHHHH----------------------HhcCCCcEEecCCCceEEEEec-CCCHHHHHhccCCceeeEEEECC
Confidence 12100 1112223443332111111111 1245554 57799999984
Q ss_pred CCcccccEEEeecccccHHHHHHHHHHhc-C--------C--------CCCCCCCCceEEEE-ecC--cchHHHHHHHHH
Q psy9574 500 NNTRKTPVMLHRAIIGSLERFIAILVENY-S--------G--------AMPLWLAPIQVMIL-NIS--KEQIEYAKKVFN 559 (783)
Q Consensus 500 ~g~~~~p~~i~~~~~G~ieRli~~LlE~~-~--------~--------~~P~~lap~qv~Vi-~~~--~~~~~~a~~i~~ 559 (783)
++...|+|||+ ++ |++|+++++++++ . | .||+|+||+||+|+ |++ ++..++|.+|++
T Consensus 286 -~~~~~P~vi~~-s~-Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~ 362 (454)
T 1g5h_A 286 -RKNVVPCVLSV-SG-DVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLN 362 (454)
T ss_dssp -TEEECCEEEEE-EE-EHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHH
T ss_pred -CCcEeeEEEeC-cc-cHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHH
Confidence 54678999996 44 4999987776654 2 2 89999999999999 887 778999999999
Q ss_pred HhHhCCCeEE--EECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCc
Q psy9574 560 FLKSKKFRVE--VDLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNE 636 (783)
Q Consensus 560 ~Lr~~gi~v~--~d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~ 636 (783)
.|+++|++|+ +|++ +.++|+|+++|+++|+||+||||++|+++|+|+||+ +++.
T Consensus 363 ~Lr~~Gi~v~~~~Ddr~~~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~-----------------------r~t~ 419 (454)
T 1g5h_A 363 ELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRS-----------------------RDTT 419 (454)
T ss_dssp HHHHTTCCEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEE-----------------------TTTC
T ss_pred HHHHCCCEEEEEecCCCCCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEE-----------------------CCCC
Confidence 9999999996 8997 899999999999999999999999999999999999 5555
Q ss_pred ccccCCHHHHHHHHHHh
Q psy9574 637 PLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 637 ~~~~~~~~~a~~~~~~~ 653 (783)
....++++++++.+.+.
T Consensus 420 eq~~v~l~el~~~l~~~ 436 (454)
T 1g5h_A 420 MKEMMHISKLRDFLVKY 436 (454)
T ss_dssp CEEEEETTSHHHHHHHH
T ss_pred cEEEEEHHHHHHHHHHH
Confidence 56899999998887654
No 22
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.5e-48 Score=440.12 Aligned_cols=346 Identities=17% Similarity=0.209 Sum_probs=285.9
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
+.++|+++|+|.+++++++|++.+++.|.++||++|.||+|++.++|.+ +|+ .+.++||++ |++|+.++||||.|+
T Consensus 7 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t~ 84 (434)
T 1wu7_A 7 EKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEATP 84 (434)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCChH
Confidence 4599999999999999999999999999999999999999999999998 788 678999998 889999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCee
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~ 414 (783)
+++++++.+ .++ ++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.+++..+ .+++.++.++|+.||+++
T Consensus 85 ~~aR~~~~~-~~~-~lP~rl~~~g~vfR~er--p~~g--R~REF~Q~d~ei~g~~~~~ad--~E~i~~~~~~l~~lgl~~ 156 (434)
T 1wu7_A 85 STVRMVTSR-KDL-QRPLRWYSFPKVWRYEE--PQAG--RYREHYQFNADIFGSDSPEAD--AEVIALASSILDRLGLQD 156 (434)
T ss_dssp HHHHHHTTC-TTC-CSSEEEEECCEEECCCC--SCSS--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhc-CCC-CCCeEEEEEcCeecCCC--CCCC--CccceEEeeEEEEcCCChHhh--HHHHHHHHHHHHHcCCCC
Confidence 999999987 777 89999999999999996 7888 999999999999999876544 567999999999999977
Q ss_pred -EEEEeecCCC-----CCCCChhh---------------HH---------------------------------------
Q psy9574 415 -IKIKLALRPN-----KRIGENNI---------------WD--------------------------------------- 434 (783)
Q Consensus 415 -~~i~l~~~~~-----~~~g~~~~---------------~~--------------------------------------- 434 (783)
+.+.++++.. ..+| ++. |+
T Consensus 157 ~~~i~l~~~g~~~~~~~~~g-~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 235 (434)
T 1wu7_A 157 IYEIRINSRKIMEEIIGGMT-SSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKS 235 (434)
T ss_dssp SEEEEEEEHHHHHHHHHTTC-SSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTTCC
T ss_pred ceEEEECChhhHHHHHHHhC-cHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHhhH
Confidence 9999986510 0111 000 10
Q ss_pred -HHH---HHHHHHHHhcCCc-eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccc
Q psy9574 435 -LAE---NSLREAISSSGVT-WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKT 505 (783)
Q Consensus 435 -~~~---~~l~~~l~~~g~~-~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~ 505 (783)
.+. ..+.+.|...|++ +.+++ |.+||+|.+||+...+.. ...+||+ ||||-. ....|+...
T Consensus 236 ~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~-~~~v~~G--------GRYD~l-i~~fgg~~~ 305 (434)
T 1wu7_A 236 SEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQ-FRAILGG--------GRYDNL-ASLMSGESV 305 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSS-CSCSSEE--------EECTTH-HHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCC-cCeeeec--------ccHHHH-HHHhCCCCC
Confidence 011 1223344456776 66655 678999999998753212 2345666 999953 334555678
Q ss_pred cEEEeecccccHHHHHHHHHHhcCCCC-CCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 506 PVMLHRAIIGSLERFIAILVENYSGAM-PLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 506 p~~i~~~~~G~ieRli~~LlE~~~~~~-P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
|+| |+..++||++++|.|+ +.| |. +|+||+|+|++++..++|.++++.||++|++|++|+++.++++|+++|
T Consensus 306 pa~---Gf~igveRl~~~l~e~--~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a 378 (434)
T 1wu7_A 306 PAV---GFGMGDAVISLLLKRE--NVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYA 378 (434)
T ss_dssp CEE---EEEEEHHHHHHHHHHT--TCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHH
T ss_pred CeE---EEEEcHHHHHHHHHhc--CCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 988 4333599999999987 577 76 799999999998889999999999999999999999989999999999
Q ss_pred hcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHh
Q psy9574 585 SLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 585 ~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~ 653 (783)
++.|+|++||||++|+++|+|+||++ .+|+ ...++++++++.+++.
T Consensus 379 ~~~g~~~~iiiG~~e~~~g~v~vk~~----------------------~~~~-~~~v~~~el~~~l~~~ 424 (434)
T 1wu7_A 379 SAIGADFAVIFGERDLERGVVTIRNM----------------------YTGS-QENVGLDSVVEHLISQ 424 (434)
T ss_dssp HHTTCSEEEEEEHHHHHTTEEEEEET----------------------TTCC-EEEEEGGGHHHHHHHC
T ss_pred HHCCCCEEEEECchhhhcCeEEEEEC----------------------CCCC-eEEEcHHHHHHHHHHH
Confidence 99999999999999999999999993 4444 4789999998887653
No 23
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.8e-48 Score=448.24 Aligned_cols=397 Identities=16% Similarity=0.185 Sum_probs=275.7
Q ss_pred ccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhcc------cccccccCCCceEeccChhHHHHHHHHHHHHHH
Q psy9574 211 NKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLN------LFHFQEESPGLIFWHPKGYIILQEIKKYMRKIY 284 (783)
Q Consensus 211 ~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~------l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~ 284 (783)
-+.+++.+|..++..+..++....++|+..+ |.+|...++ -|++ +.++|++||+|.++.+++.|++.+++.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l-~~P~G~~D~lP~~~~~~~~ie~~i~~~~ 95 (517)
T 4g85_A 18 LEELVKLQGERVRGLKQQKASAELIEEEVAK-LLKLKAQLGPDESKQKFVL-KTPKGTRDYSPRQMAVREKVFDVIIRCF 95 (517)
T ss_dssp ---------------------------------------------CCCCCC-CCCTTCCCBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcccccccCCHHHHHHHHHH-HHHhhhhcCCcccccceee-eCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3466788888777777777777766665433 555554442 3444 3489999999999999999999999999
Q ss_pred HHcCCeEeecCcccchHHHhhh-CCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceee
Q psy9574 285 KYNGYKEIKTPQMLDLSLWKKT-GHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHR 362 (783)
Q Consensus 285 ~~~G~~ev~tP~l~~~~l~~~s-g~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR 362 (783)
.++||++|.||+|++.++|.++ |+ ..++||+| |++|+.++|||+.|++++++++.+ +.+|+|+||+|+|||
T Consensus 96 ~~~Gy~eI~tP~lE~~el~~~~~ge---~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~----~~~p~k~yyig~vfR 168 (517)
T 4g85_A 96 KRHGAEVIDTPVFELKETLMGKYGE---DSKLIYDLKDQGGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYR 168 (517)
T ss_dssp HHHTCEECBCCSEEEHHHHHCC---------CSCBBCCTTSCCEEECSCSHHHHHHHHHHT----TCSCEEEEEEEEEEC
T ss_pred HHCCCeEEECcccCcHHHhhcccCc---CcceeEEEECCCCCEEEeCCcCcHHHHHHHHhC----CCCCceeEEEeceEe
Confidence 9999999999999999999764 43 25789998 899999999999999999988753 468999999999999
Q ss_pred cCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC------------------
Q psy9574 363 NESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN------------------ 424 (783)
Q Consensus 363 ~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~------------------ 424 (783)
+|+++.++| |+|||+|+|+|+||.+++...+ .|++.++.++|+.||++++.+.+|++..
T Consensus 169 ~Erp~~~~G--R~ReF~Q~g~ei~G~~~~~~aD-aEvi~l~~~~l~~lgl~~~~i~in~~~~l~~~~~~~~~~~~~~~~~ 245 (517)
T 4g85_A 169 RDNPAMTRG--RYREFYQCDFDIAGNFDPMIPD-AECLKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTI 245 (517)
T ss_dssp CCC---------CCEEEEEEEEEESCCCTTHHH-HHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccCcccccC--ccceeeeeceeccCCccchHHH-HHHHHHHHHHHHhhcCCcccccccchhhHHHHHHhhcchHHHHHHH
Confidence 998444778 9999999999999987764433 4789999999999999999999986421
Q ss_pred -------CCCC------------------------------ChhhHHHH------------------HHHHHHHHHhcCC
Q psy9574 425 -------KRIG------------------------------ENNIWDLA------------------ENSLREAISSSGV 449 (783)
Q Consensus 425 -------~~~g------------------------------~~~~~~~~------------------~~~l~~~l~~~g~ 449 (783)
...+ ..+.++.. .+.+.+.|+..|+
T Consensus 246 ~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~ 325 (517)
T 4g85_A 246 CSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGI 325 (517)
T ss_dssp HHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 0000 00000000 0234455677777
Q ss_pred c--eeec----CCCCCcccccEEEEeecCC--------CCeeeecceeeecCcccccCceeeecC--CcccccEEEeecc
Q psy9574 450 T--WEEF----PGEGAFYGPKIEYHLKDSI--------GRSWQCGTIQIDFSMPHRLGAEYIAEN--NTRKTPVMLHRAI 513 (783)
Q Consensus 450 ~--~~~~----~g~~~y~g~~~e~~~~d~~--------g~~~~~g~~~lD~~~~~r~d~~y~~~~--g~~~~p~~i~~~~ 513 (783)
. +.++ .|++||+|++||+...+.. +...+||| ||||-. .... |+...|++ |+
T Consensus 326 ~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~G--------GRYD~L-v~~f~~~G~~~pav---Gf 393 (517)
T 4g85_A 326 DDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG--------GRYDGL-VGMFDPKGRKVPCV---GL 393 (517)
T ss_dssp GGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEE--------EECHHH-HHTTSSSCCCCCEE---EE
T ss_pred CcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCC--------CchhHH-HHHhccCCCCCCcc---cc
Confidence 5 3344 4889999999998764321 11245666 999942 3333 45678999 44
Q ss_pred cccHHHHHHHHHHhcCC-CCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECC-CccHHHHHHHhhcCCCCE
Q psy9574 514 IGSLERFIAILVENYSG-AMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR-NEKIAYKIRLHSLEKLPY 591 (783)
Q Consensus 514 ~G~ieRli~~LlE~~~~-~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~-~~~l~~k~~~A~~~gip~ 591 (783)
..++||++.+|.++..+ .+|.+.+|.+|+|++++++..++|.+|++.||++|++|++|+. +.++++|+++|++.|+||
T Consensus 394 a~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~ 473 (517)
T 4g85_A 394 SIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPL 473 (517)
T ss_dssp EECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCE
T ss_pred cchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCE
Confidence 44599999888654322 4566678899999999999999999999999999999999864 568999999999999999
Q ss_pred EEEEcccccccCceeEEEeeecCCCcccccccccceEEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 592 IIIVGNKELCENKITEREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 592 ~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
+||||++|+++|+|+||+| .+|++ ..++++++++.++++.
T Consensus 474 ~viiG~~E~~~g~v~vK~l----------------------~tgeq-~~v~~~elv~~lk~~l 513 (517)
T 4g85_A 474 VAIIGEQELKDGVIKLRSV----------------------TSREE-VDVRREDLVEEIKRRT 513 (517)
T ss_dssp EEEECHHHHHTTEEEEEET----------------------TTCCE-EEEEHHHHHHHHHHHC
T ss_pred EEEECChhHhCCEEEEEEC----------------------CCCCe-EEeeHHHHHHHHHHHh
Confidence 9999999999999999996 66765 6899999999987753
No 24
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=3.7e-48 Score=438.60 Aligned_cols=346 Identities=16% Similarity=0.215 Sum_probs=274.8
Q ss_pred cCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCC-ceEe-ee---C----------
Q psy9574 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN-MFTT-KS---E---------- 322 (783)
Q Consensus 258 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~-my~~-~~---~---------- 322 (783)
.++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.++| +. .++ ||+| |+ +
T Consensus 14 ~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~-~ke~m~~~~d~~~~g~~~~~~~~~~ 90 (465)
T 3net_A 14 TPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG--NQ-GDNIIYGLEPILPPNRQAEKDKSGD 90 (465)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC---CBEEEEEEEC-------------
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC--CC-CccceEEEecccccccccccccccC
Confidence 48999999999999999999999999999999999999999999999886 33 356 9998 76 2
Q ss_pred --CceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHH--HHHHH
Q psy9574 323 --NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIK--NEIVV 398 (783)
Q Consensus 323 --~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~--~e~~e 398 (783)
|+.++|||+.|++++++++.+. .+.++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.++... + .|
T Consensus 91 ~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~--~~~g--r~Ref~Q~g~ei~G~~~~~a~~D--aE 163 (465)
T 3net_A 91 TGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGER--AKDG--RFRQFRQCDIDVVGREKLSLLYD--AQ 163 (465)
T ss_dssp ---CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHH--HH
T ss_pred CCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCC--CCCC--CcceeEEeeEEEECCCCccchhh--HH
Confidence 7999999999999999999775 45689999999999999998 7888 99999999999999987544 4 57
Q ss_pred HHHHHHHHHhhcCCeeEEEEeecCCC-----CCCCChh------------------------------------------
Q psy9574 399 FNELVHKVYNEFGFKKIKIKLALRPN-----KRIGENN------------------------------------------ 431 (783)
Q Consensus 399 ~~~~~~~i~~~lGl~~~~i~l~~~~~-----~~~g~~~------------------------------------------ 431 (783)
++.++.++|+.||++++.+.+|++.. ..+|.++
T Consensus 164 vi~l~~~~l~~lgl~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~ 243 (465)
T 3net_A 164 MPAIITEIFEAVNIGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFV 243 (465)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 89999999999999889999997531 1112111
Q ss_pred --------hHHHH----------------HHHHHHH-HHhc-CCc----eeecC----CCCCcccccEEEEeecCCCCee
Q psy9574 432 --------IWDLA----------------ENSLREA-ISSS-GVT----WEEFP----GEGAFYGPKIEYHLKDSIGRSW 477 (783)
Q Consensus 432 --------~~~~~----------------~~~l~~~-l~~~-g~~----~~~~~----g~~~y~g~~~e~~~~d~~g~~~ 477 (783)
..+.+ .+.|... |+.. .-. +.+++ |++||+|++||+...+......
T Consensus 244 ~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~~~~ 323 (465)
T 3net_A 244 KIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGS 323 (465)
T ss_dssp TCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCGGGCC
T ss_pred HhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECCCCccce
Confidence 01100 0111222 3332 114 66655 7899999999998755211236
Q ss_pred eecceeeecCcccccCceeee--cCCcccccEEEeecccccHHHHHHHHHHhcCCCCCC-CCCCceEEEEecCcchHHHH
Q psy9574 478 QCGTIQIDFSMPHRLGAEYIA--ENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPL-WLAPIQVMILNISKEQIEYA 554 (783)
Q Consensus 478 ~~g~~~lD~~~~~r~d~~y~~--~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~-~lap~qv~Vi~~~~~~~~~a 554 (783)
+||| ||||-. .. . |+. .|++ |+..++||++.+|.|+ +.||. |.+|.||+|+|++++..++|
T Consensus 324 i~~G--------GRYD~L-~~~f~-g~~-~pav---GfaiGieRli~~L~e~--g~~p~~~~~p~~V~Vi~~~~~~~~~A 387 (465)
T 3net_A 324 ICSG--------GRYEEL-VGTFI-GEK-MPGV---GISIGLTRLISRLLKA--GILNTLPPTPAQVVVVNMQDELMPTY 387 (465)
T ss_dssp SSEE--------EEESSS-SGGGT-CSC-CCEE---EEEEEHHHHHHHHHHT--TSSCCCCSCSCCEEECCSCGGGHHHH
T ss_pred eccc--------ccHHHH-hhhhc-CCC-Ccee---eeeccHHHHHHHHHHc--CCCCCcCCCCCeEEEEEcCHHHHHHH
Confidence 7887 999953 44 3 665 8999 4444599999999987 67997 89999999999999999999
Q ss_pred HHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccC-ceeEEEeeecCCCcccccccccceEEEecc
Q psy9574 555 KKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCEN-KITEREIIIDRPKHRINREIIAPELRLSGI 633 (783)
Q Consensus 555 ~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~-~V~vr~~~~~~~~~~~n~~I~~~~v~li~~ 633 (783)
.++++.||++|++|++|+++.++++|+++|++.|+||+||||++ +++| +|+||++ .
T Consensus 388 ~~la~~LR~~Gi~ve~d~~~~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~----------------------~ 444 (465)
T 3net_A 388 LKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDL----------------------Q 444 (465)
T ss_dssp HHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEET----------------------T
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEEC----------------------C
Confidence 99999999999999999999999999999999999999999999 9999 9999994 4
Q ss_pred cCcccccCCHHHHHHHHHHh
Q psy9574 634 KNEPLGIVTLEKAFYLAEKE 653 (783)
Q Consensus 634 ~g~~~~~~~~~~a~~~~~~~ 653 (783)
+|+ ...++++++++.+++.
T Consensus 445 t~e-q~~v~~~el~~~l~~~ 463 (465)
T 3net_A 445 SGE-QVEVALADLAEEIKRR 463 (465)
T ss_dssp TTE-EEECC-CCHHHHHHHT
T ss_pred CCc-eEEeeHHHHHHHHHHh
Confidence 555 4789999998887653
No 25
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=7.5e-47 Score=425.00 Aligned_cols=330 Identities=17% Similarity=0.168 Sum_probs=269.5
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhh-hCCcccCCCCceEe-eeCCceEEEcCCCcH
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK-TGHWENYKDNMFTT-KSENRFYALKPMNCP 334 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~~~LrP~~~~ 334 (783)
+.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+ +|++ +.++||+| |++|+.++|||+.|+
T Consensus 30 ~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~~l~LRpd~T~ 107 (456)
T 3lc0_A 30 EPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGHRVALRPEMTP 107 (456)
T ss_dssp SCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSCEEEECSCSHH
T ss_pred cCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCCEEecCCcCHH
Confidence 3489999999999999999999999999999999999999999999987 4873 67899998 889999999999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCC--
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGF-- 412 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl-- 412 (783)
+++++++.+. .+.++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.++...+ .|++.++.++|+.||+
T Consensus 108 ~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~--~~~g--R~ReF~Q~g~ei~G~~~~~~D--aEvi~l~~~~l~~lgl~~ 180 (456)
T 3lc0_A 108 SLARLLLGKG-RSLLLPAKWYSIPQCWRYEA--ITRG--RRREHYQWNMDIVGVKSVSAE--VELVCAACWAMRSLGLSS 180 (456)
T ss_dssp HHHHHHHHSC-TTCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHH--HHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcC-cccCCCEEEEEeccEEecCC--CCCC--CccceEEEEEEEEcCCChHhh--HHHHHHHHHHHHHcCCCC
Confidence 9999998775 46789999999999999998 7888 999999999999999876544 5789999999999999
Q ss_pred eeEEEEeecCCC-----CCCCCh----------------hhHH-------------------------------------
Q psy9574 413 KKIKIKLALRPN-----KRIGEN----------------NIWD------------------------------------- 434 (783)
Q Consensus 413 ~~~~i~l~~~~~-----~~~g~~----------------~~~~------------------------------------- 434 (783)
+++.+.+|++.. ..+|.+ ..|+
T Consensus 181 ~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~ 260 (456)
T 3lc0_A 181 KDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGE 260 (456)
T ss_dssp TTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCT
T ss_pred CceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhH
Confidence 679999997421 000100 0011
Q ss_pred --HHHH---HHHHHHHhcCCc--eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcc
Q psy9574 435 --LAEN---SLREAISSSGVT--WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTR 503 (783)
Q Consensus 435 --~~~~---~l~~~l~~~g~~--~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~ 503 (783)
.+.+ .+.+.|+..|+. +.+++ |++||+|++||+...+.. ...+||| ||||- .....|+.
T Consensus 261 ~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~-~~~I~~G--------GRYD~-Lv~~fg~~ 330 (456)
T 3lc0_A 261 EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGK-FRALCGG--------GRYDN-LLTTYGSP 330 (456)
T ss_dssp TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSC-SSCSEEE--------EECSS-HHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCC-cceEeec--------ccHHH-HHHHhCCC
Confidence 0112 233455678887 66665 789999999999854322 2467887 99996 36677776
Q ss_pred -cccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHH
Q psy9574 504 -KTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIR 582 (783)
Q Consensus 504 -~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~ 582 (783)
..|++ |+..++||++.+|.+. +..|..-.+.+|+|++.+++...+|.++++.||++|++|++|..+.+++++++
T Consensus 331 ~~~Pav---GFaig~eRl~~~l~~~--~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k 405 (456)
T 3lc0_A 331 TPIPCA---GFGFGDCVIVELLQEK--RLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFN 405 (456)
T ss_dssp SCCCEE---EEEEESSHHHHHHHHT--TCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHH
T ss_pred CCCCEE---EEEeEHHHHHHHHHhc--CCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHH
Confidence 78999 4444599999988664 34443334578999999998899999999999999999999998889999999
Q ss_pred HhhcCCCCEEEEEcccccccCceeEEEe
Q psy9574 583 LHSLEKLPYIIIVGNKELCENKITEREI 610 (783)
Q Consensus 583 ~A~~~gip~~iivG~~e~~~~~V~vr~~ 610 (783)
+|++.|+||+||||++|+++|+|+||+|
T Consensus 406 ~A~k~ga~~vviiGe~E~~~g~v~vK~l 433 (456)
T 3lc0_A 406 YADRVGAVRAVLVAPEEWERGEVQVKML 433 (456)
T ss_dssp HHHHTTEEEEEEECHHHHHTTEEEEEEC
T ss_pred HHHHcCCCEEEEECCchhcCCeEEEEEC
Confidence 9999999999999999999999999996
No 26
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-46 Score=425.88 Aligned_cols=364 Identities=15% Similarity=0.161 Sum_probs=275.8
Q ss_pred cHHHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh-CCcccCCCCceEe-
Q psy9574 242 DHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT-GHWENYKDNMFTT- 319 (783)
Q Consensus 242 ~h~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~~~~~~~~my~~- 319 (783)
.|..+.+. + |++ +.++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.++ |+ ..++||+|
T Consensus 3 ~~~~~~~~-~-~~~-~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~---~~~~~y~f~ 76 (464)
T 4g84_A 3 GSEFELRR-Q-FVL-KTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGE---DSKLIYDLK 76 (464)
T ss_dssp ------------CC-CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-------CCCBBC
T ss_pred chhhhHhh-c-cce-eCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCc---CcceeEEEE
Confidence 45555555 3 333 46899999999999999999999999999999999999999999999764 43 25789998
Q ss_pred eeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHH
Q psy9574 320 KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVF 399 (783)
Q Consensus 320 ~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~ 399 (783)
|++|+.++|||+.|++++++++.+ +.+|+|+||+|+|||+|+ |+.|..|+|||+|+|+|+||.+++..++ .|+
T Consensus 77 D~~g~~l~LRPd~T~~~aR~~~~~----~~~p~k~~y~g~vfR~er--p~~~~gR~Ref~Q~g~ei~G~~~~~~aD-aEv 149 (464)
T 4g84_A 77 DQGGELLSLRYDLTVPFARYLAMN----KLTNIKRYHIAKVYRRDN--PAMTRGRYREFYQCDFDIAGNFDPMIPD-AEC 149 (464)
T ss_dssp CCSSCCEEECSCSHHHHHHHHHHT----TCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHH-HHH
T ss_pred CCCCCEEEeCCcCcHHHHHHHHhc----CCCCceeEEEecceeccC--CccccCccceeeecceeccCCccchhhH-HHH
Confidence 899999999999999999988753 468999999999999997 5444459999999999999987654333 577
Q ss_pred HHHHHHHHhhcCCeeEEEEeecCCC-------------------------CCCC--------------------------
Q psy9574 400 NELVHKVYNEFGFKKIKIKLALRPN-------------------------KRIG-------------------------- 428 (783)
Q Consensus 400 ~~~~~~i~~~lGl~~~~i~l~~~~~-------------------------~~~g-------------------------- 428 (783)
+.++.++|+.||++++.+.+|++.. +..+
T Consensus 150 i~l~~~~l~~lgl~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 229 (464)
T 4g84_A 150 LKIMCEILSSLQIGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYV 229 (464)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 9999999999999999999986310 0000
Q ss_pred ----ChhhHHH---------------H---HHHHHHHHHhcCCc--eeec----CCCCCcccccEEEEeecCCC------
Q psy9574 429 ----ENNIWDL---------------A---ENSLREAISSSGVT--WEEF----PGEGAFYGPKIEYHLKDSIG------ 474 (783)
Q Consensus 429 ----~~~~~~~---------------~---~~~l~~~l~~~g~~--~~~~----~g~~~y~g~~~e~~~~d~~g------ 474 (783)
..+.++. + .+.+.+.|+..|+. +.++ .|.+||+|++||+...+...
T Consensus 230 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~ 309 (464)
T 4g84_A 230 QQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEP 309 (464)
T ss_dssp TCEESHHHHHHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------
T ss_pred HhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCC
Confidence 0000000 0 12345567777875 3444 47899999999987644211
Q ss_pred --CeeeecceeeecCcccccCceeeecC--CcccccEEEeecccccHHHHHHHHHHhcCCCCC--CCCCCceEEEEecCc
Q psy9574 475 --RSWQCGTIQIDFSMPHRLGAEYIAEN--NTRKTPVMLHRAIIGSLERFIAILVENYSGAMP--LWLAPIQVMILNISK 548 (783)
Q Consensus 475 --~~~~~g~~~lD~~~~~r~d~~y~~~~--g~~~~p~~i~~~~~G~ieRli~~LlE~~~~~~P--~~lap~qv~Vi~~~~ 548 (783)
...+||+ ||||-. .... ++...|++ |+..++||++.+|.++.. .|| .|.+|.+|+|++.++
T Consensus 310 ~~~~~i~~G--------GRYD~L-~~~~~~~g~~~pav---GfaigieRl~~~l~~~~~-~~~~~~~~~~~~v~v~~~~~ 376 (464)
T 4g84_A 310 LGVGSVAAG--------GRYDGL-VGMFDPKGRKVPCV---GLSIGVERIFSIVEQRLE-ALEEKIRTTETQVLVASAQK 376 (464)
T ss_dssp EEEEEEEEE--------EECCST-GGGTSTTCCCCCEE---EEEECHHHHHHHHHHHHH-TTTCCCCSCCCCEEEECSSS
T ss_pred cccceeccC--------CchhHH-HHHhccCCCCCCCc---cccccHHHHHHHHHHhcc-ccCcccccccceEEEEeCCH
Confidence 1245666 999953 4433 34568999 333349999998877543 333 345678999999999
Q ss_pred chHHHHHHHHHHhHhCCCeEEEECC-CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeecCCCcccccccccce
Q psy9574 549 EQIEYAKKVFNFLKSKKFRVEVDLR-NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPE 627 (783)
Q Consensus 549 ~~~~~a~~i~~~Lr~~gi~v~~d~~-~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~~~~~~~n~~I~~~~ 627 (783)
+..++|.+|++.||++|++|++|+. +.++++|+++|++.|+||+||||++|+++|+|+||+|
T Consensus 377 ~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l----------------- 439 (464)
T 4g84_A 377 KLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSV----------------- 439 (464)
T ss_dssp SCHHHHHHHHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEET-----------------
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEEC-----------------
Confidence 9999999999999999999999864 5689999999999999999999999999999999996
Q ss_pred EEEecccCcccccCCHHHHHHHHHHhh
Q psy9574 628 LRLSGIKNEPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 628 v~li~~~g~~~~~~~~~~a~~~~~~~~ 654 (783)
.+|++ ..++++++++.++++.
T Consensus 440 -----~tgeq-~~v~~~elv~~lk~~l 460 (464)
T 4g84_A 440 -----TSREE-VDVRREDLVEEIKRRT 460 (464)
T ss_dssp -----TTCCE-EEEEGGGHHHHHHHHH
T ss_pred -----CCCCe-EEeeHHHHHHHHHHHh
Confidence 67775 6899999999987764
No 27
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.4e-46 Score=415.99 Aligned_cols=288 Identities=18% Similarity=0.322 Sum_probs=242.8
Q ss_pred CCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHH
Q psy9574 208 NQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKI 283 (783)
Q Consensus 208 d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~ 283 (783)
+++.+...|.||.+.. ..++++||++||+++|||+|++. ++|+++|+|.|++++++|++++++.
T Consensus 118 ~e~~n~~~~~~g~~~~------------~~f~~~~H~~l~~~l~l~d~~~~~~~~g~G~~~~~p~ga~l~~~L~~~~~~~ 185 (425)
T 2dq3_A 118 DEKDNVEVRRWGEPRK------------FDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALINFMLDL 185 (425)
T ss_dssp SGGGCEEEEEESCCCC------------CSSCCCCHHHHHHHTTCEEHHHHHHHHCSSCCEEETHHHHHHHHHHHHHHHH
T ss_pred CccCcEEEEEeCCCCC------------CCCCcccHHHHHhhCCeEEecccccccCCCceEECcHHHHHHHHHHHHHHHH
Confidence 4455566777886321 12577999999999999999885 8999999999999999999999999
Q ss_pred HHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeec
Q psy9574 284 YKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRN 363 (783)
Q Consensus 284 ~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~ 363 (783)
+.++||++|.||.|++.++|.+||||+.|.++||+++ ++.++||||+|++++++|++.+.++++||+|++++|+|||+
T Consensus 186 ~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~ 263 (425)
T 2dq3_A 186 HTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRR 263 (425)
T ss_dssp HHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECC
T ss_pred HHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecC
Confidence 9999999999999999999999999999999999884 57899999999999999999999999999999999999999
Q ss_pred CCCC---CCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHH
Q psy9574 364 ESSG---SLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSL 440 (783)
Q Consensus 364 E~~g---~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l 440 (783)
|.++ +++||+|+|||+|.|+|+||.++++.+++.+++.++.++|+.|||++..+.+++++...
T Consensus 264 E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~gdlg~-------------- 329 (425)
T 2dq3_A 264 EAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGF-------------- 329 (425)
T ss_dssp CCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCT--------------
T ss_pred CCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCcCCC--------------
Confidence 9965 79999999999999999999999999999999999999999999984447777765311
Q ss_pred HHHHHhcCCceeecCCCCCcccccEEEEeecC--CCCeeeecceeeecCcccccCceeeecCCcccccEEEeeccccc--
Q psy9574 441 REAISSSGVTWEEFPGEGAFYGPKIEYHLKDS--IGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGS-- 516 (783)
Q Consensus 441 ~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~--~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~-- 516 (783)
.+.....+|++++.. +...++|++ +.||+ |+||+++|.+.+|++. .++| +++|+
T Consensus 330 -----------------~a~~~~diE~w~p~~~~~~ei~s~sn-~~Dfq-a~r~~i~y~~~~~~k~--~~vH-tl~Gs~~ 387 (425)
T 2dq3_A 330 -----------------SAAKTYDIEVWFPSQNKYREISSCSN-CEDFQ-ARRMNTRFKDSKTGKN--RFVH-TLNGSGL 387 (425)
T ss_dssp -----------------TCSEEEEEEEEEGGGTEEEEEEEEEE-CTTHH-HHHHTEEEECTTTCSE--EECE-EEEEEEE
T ss_pred -----------------hHHhccchhhccchhHHHHHHHHcCC-ccccC-cccCCeEEECCCCCee--EEEE-EEecccc
Confidence 111111245555432 222356765 48998 8999999999885433 3677 77787
Q ss_pred -HHHHHHHHHHhcC---C--CCCCCCCCce-EEEEe
Q psy9574 517 -LERFIAILVENYS---G--AMPLWLAPIQ-VMILN 545 (783)
Q Consensus 517 -ieRli~~LlE~~~---~--~~P~~lap~q-v~Vi~ 545 (783)
++|++++|+|+|+ | .||+||+|++ +.+|+
T Consensus 388 av~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 388 AVGRTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp EHHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred HHHHHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 9999999999998 5 8999999999 66664
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=3.4e-45 Score=408.56 Aligned_cols=267 Identities=14% Similarity=0.198 Sum_probs=223.3
Q ss_pred hhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCC
Q psy9574 238 AEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYK 313 (783)
Q Consensus 238 ~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~ 313 (783)
++++||++||+++|||+|+.. ++|+++|+|.|++++++|++++++.+.++||++|.||.|++.++|.+||||+.|.
T Consensus 157 ~~~~~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~ 236 (455)
T 2dq0_A 157 WKPKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFE 236 (455)
T ss_dssp SCCCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHH
T ss_pred CccCCHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCCh
Confidence 678999999999999999863 7999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC---CCCCCcccceeEEEeceeEecCch
Q psy9574 314 DNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS---GSLHGMMRTRSFIQDDGHIFCTKS 390 (783)
Q Consensus 314 ~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~---g~~~GL~R~ReF~q~d~~~f~~~~ 390 (783)
++||.++ +++++|+||+|++++.+|++++.||++||+|++++|+|||+|++ +.++||+|+|||+|.|+|+||+++
T Consensus 237 ~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe 314 (455)
T 2dq0_A 237 DVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPE 314 (455)
T ss_dssp HTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTT
T ss_pred HhhCeec--CCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHH
Confidence 9999984 47899999999999999999999999999999999999999996 357999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEee
Q psy9574 391 QIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLK 470 (783)
Q Consensus 391 ~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~ 470 (783)
++.+++.+++.++.++|+.|||++..+.+++++ ...++. ....+|++++
T Consensus 315 ~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gd-lg~~a~------------------------------~~~diE~w~p 363 (455)
T 2dq0_A 315 ESWEWHEKIIRNAEELFQELEIPYRVVNICTGD-LGYVAA------------------------------KKYDIEAWMP 363 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCEEEEECCGGG-SCSSCS------------------------------EEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEEECCCcc-ccChhh------------------------------ceeeeeeecC
Confidence 999999999999999999999984444443332 122221 1112444442
Q ss_pred cCCCCeeeeccee--eecCcccccCceeeec-CCcccccEEEeecccccHHHHHHHHHHhcC---C--CCCCCCCCce
Q psy9574 471 DSIGRSWQCGTIQ--IDFSMPHRLGAEYIAE-NNTRKTPVMLHRAIIGSLERFIAILVENYS---G--AMPLWLAPIQ 540 (783)
Q Consensus 471 d~~g~~~~~g~~~--lD~~~~~r~d~~y~~~-~g~~~~p~~i~~~~~G~ieRli~~LlE~~~---~--~~P~~lap~q 540 (783)
+.|+...+++++ .||| ++||+++|.+. +|+...++++.+..+| ++|++++|+|+|+ | .||+||+|+|
T Consensus 364 -~~~~~~ei~s~s~c~Dfq-arR~~iry~~~~~g~~~~vHtlngs~la-v~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 364 -GQGKFREVVSASNCTDWQ-ARRLNIRFRDRTDEKPRYVHTLNSTAIA-TSRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp -TTTEEEEEEEEEECTTTT-HHHHTEEEESSTTSCCEECEEEEEEEEE-HHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred -cCCcccEEEeeccchhhH-hhccCcEEecCCCCcEEEEEEEechHhH-HHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 223333344333 4788 89999999998 7766555554432233 8999999999998 6 8999999999
No 29
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=5e-45 Score=406.79 Aligned_cols=293 Identities=16% Similarity=0.241 Sum_probs=243.2
Q ss_pred CCc-ccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHH
Q psy9574 208 NQK-NKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRK 282 (783)
Q Consensus 208 d~~-~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~ 282 (783)
|++ .+...|.||... .++++||++||++||||+|++. ++|+++|+|.|++++++|++++++
T Consensus 148 ~e~~dn~~vr~~g~~~--------------~~~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d 213 (522)
T 3vbb_A 148 DEDVDNKVERIWGDCT--------------VRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALR 213 (522)
T ss_dssp CHHHHCEEEEEESCSS--------------CCCSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHH
T ss_pred CcccCcEEEEEeCCCC--------------CCCccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHH
Confidence 344 455567678642 1256899999999999999984 899999999999999999999999
Q ss_pred HHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeee---------CCceEEEcCCCcHHHHHHHhcccccCCCCCce
Q psy9574 283 IYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKS---------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLR 353 (783)
Q Consensus 283 ~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~---------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr 353 (783)
.+.++||++|.||.|.+.++|..||||+.|.++||+++. .+++++|+||+|++++.+|++.+.||++||+|
T Consensus 214 ~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr 293 (522)
T 3vbb_A 214 TLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIK 293 (522)
T ss_dssp HHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEE
T ss_pred HHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCee
Confidence 999999999999999999999999999999999999943 25789999999999999999999999999999
Q ss_pred EEEecceeecCCC---CCCCCcccceeEEEeceeEecCchh--HHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCC
Q psy9574 354 FGEFGQCHRNESS---GSLHGMMRTRSFIQDDGHIFCTKSQ--IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIG 428 (783)
Q Consensus 354 ~~~~g~~fR~E~~---g~~~GL~R~ReF~q~d~~~f~~~~~--~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g 428 (783)
++++|+|||+|++ ++++||+|+|||+|.|+|+||.|++ +.+++.++++++.++|+.|||++..+.+++++.
T Consensus 294 ~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdl---- 369 (522)
T 3vbb_A 294 YAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSL---- 369 (522)
T ss_dssp EEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGC----
T ss_pred EEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccC----
Confidence 9999999999996 3689999999999999999999988 999999999999999999999977777777542
Q ss_pred ChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCe--eeecceeeecCcccccCceeeec---CCcc
Q psy9574 429 ENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRS--WQCGTIQIDFSMPHRLGAEYIAE---NNTR 503 (783)
Q Consensus 429 ~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~--~~~g~~~lD~~~~~r~d~~y~~~---~g~~ 503 (783)
|.++.....+|+++++..+.. +.|+ ++.||| ++|++++|.+. +|+.
T Consensus 370 ---------------------------g~~asktyDiE~w~P~~~~y~EIsScS-nc~Dyq-Arr~~iry~~~~~~~~k~ 420 (522)
T 3vbb_A 370 ---------------------------NHAASKKLDLEAWFPGSGAFRELVSCS-NCTDYQ-ARRLRIRYGQTKKMMDKV 420 (522)
T ss_dssp ---------------------------CTTCSEEEEEEEEETTTTEEEEEEEEE-ECTTHH-HHHHTCEESCC---CCCC
T ss_pred ---------------------------CCchhheeceeEecCCCCceeEEEEec-CCCCCc-cceeeeEEccccccCCCe
Confidence 222333335677776532222 2233 346888 69999999875 6777
Q ss_pred cccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCCceE----EEEecCc
Q psy9574 504 KTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAPIQV----MILNISK 548 (783)
Q Consensus 504 ~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap~qv----~Vi~~~~ 548 (783)
.+++++.++.++ ++|+|+||+|+|+. .+|+.|+||.. .|||...
T Consensus 421 ~~vhtlNgs~la-v~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~ 472 (522)
T 3vbb_A 421 EFVHMLNATMCA-TTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVK 472 (522)
T ss_dssp CBCEEEEEEEEE-HHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCS
T ss_pred eeceEEeccchH-HHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCC
Confidence 788887754344 99999999999985 89999999987 7999874
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=8.2e-45 Score=407.20 Aligned_cols=291 Identities=16% Similarity=0.239 Sum_probs=239.6
Q ss_pred CCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHH
Q psy9574 208 NQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKI 283 (783)
Q Consensus 208 d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~ 283 (783)
+++.+.+.|.||.... ..++++||+.||+++|||+|+.. ++|+++|+|.|++++++|++++++.
T Consensus 165 ~e~~n~~v~~~g~~~~------------~~f~~~dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~ 232 (501)
T 1wle_A 165 DESQARVLHVVGDKPA------------FSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNK 232 (501)
T ss_dssp SGGGCEEEEEESCCCC------------CSSCCCCHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCC------------CCCCCCCHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHH
Confidence 4444455677886321 13577999999999999999864 6999999999999999999999999
Q ss_pred HHHcCCeEeecCcccchHHHhhhCCcccCCC-CceEeee-CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEeccee
Q psy9574 284 YKYNGYKEIKTPQMLDLSLWKKTGHWENYKD-NMFTTKS-ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCH 361 (783)
Q Consensus 284 ~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~-~my~~~~-~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~f 361 (783)
+.++||++|.||.|.+.++|.+||||+.|.+ +||+++. ++++++|+||+|++++.++++.+.||++||+|++++|+||
T Consensus 233 ~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~F 312 (501)
T 1wle_A 233 LIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCY 312 (501)
T ss_dssp HHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEE
T ss_pred HHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcc
Confidence 9999999999999999999999999999998 9999943 3678999999999999999999999999999999999999
Q ss_pred ecCCC--CCCCCcccceeEEEeceeEecCc--hhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHH
Q psy9574 362 RNESS--GSLHGMMRTRSFIQDDGHIFCTK--SQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAE 437 (783)
Q Consensus 362 R~E~~--g~~~GL~R~ReF~q~d~~~f~~~--~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~ 437 (783)
|+|.+ .+++||+|+|||+|.|+|+||.+ +++.+++.++++++.++|+.|||++..+.+++++..+
T Consensus 313 R~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~----------- 381 (501)
T 1wle_A 313 RAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGL----------- 381 (501)
T ss_dssp CCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTT-----------
T ss_pred cCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCC-----------
Confidence 99986 25899999999999999999999 5899999999999999999999996667777765321
Q ss_pred HHHHHHHHhcCCceeecCCCCCcccccEEEEeecC--CCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccc
Q psy9574 438 NSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDS--IGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG 515 (783)
Q Consensus 438 ~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~--~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G 515 (783)
++...-.+|++++.. +...+.|+ ++.||| ++||+++|.+.+|+...+++++++.+
T Consensus 382 --------------------~a~~~~DiE~w~p~~~~~~Ei~s~s-n~~Dfq-arR~~iry~~~~gk~~~vHtlngSgl- 438 (501)
T 1wle_A 382 --------------------PAYRKFDIEAWMPGRGRFGEVTSAS-NCTDFQ-SRRLHIMFQTEAGELQFAHTVNATGC- 438 (501)
T ss_dssp --------------------TCSEEEEEEEEETTTTEEEEEEEEE-ECTTHH-HHHHTCEEECSSSCEEECEEEEEEEE-
T ss_pred --------------------chhheecHhhcccccccceeEEecc-ccccch-hhhcCcEEECCCCCEEEEEEECCccc-
Confidence 111112345554432 12234455 568998 89999999998887766666553222
Q ss_pred cHHHHHHHHHHhcC---C--CCCCCCCCce-EEEE
Q psy9574 516 SLERFIAILVENYS---G--AMPLWLAPIQ-VMIL 544 (783)
Q Consensus 516 ~ieRli~~LlE~~~---~--~~P~~lap~q-v~Vi 544 (783)
+++|+|++|+|+|+ | .||.||+||+ .-+|
T Consensus 439 av~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 439 AVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp EHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred hHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 39999999999997 4 7999999997 4455
No 31
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=5.6e-45 Score=403.99 Aligned_cols=283 Identities=15% Similarity=0.221 Sum_probs=239.5
Q ss_pred cCCCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHH
Q psy9574 206 KGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMR 281 (783)
Q Consensus 206 ~~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~ 281 (783)
.||+++++++|.||.+.. + +++++||++||+++|||+ +.. ++|+++|+|.|++++++|+++++
T Consensus 111 ~g~e~~n~~~~~~g~~~~----~--------~~~~~~H~~lg~~l~l~d-~~~~~~~g~G~~~~~p~ga~l~~aL~~~~~ 177 (421)
T 1ses_A 111 VGGEEANREIKRVGGPPE----F--------SFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAM 177 (421)
T ss_dssp SSSGGGCEEEEEESCCCC----C--------SSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEETHHHHHHHHHHHHHH
T ss_pred CCCccccEEEEEeCCCCc----c--------CCCCCCHHHHHHHcCccc-cccccccCCCeEEECcHHHHHHHHHHHHHH
Confidence 357788889999997421 1 267899999999999999 763 79999999999999999999999
Q ss_pred HHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEeccee
Q psy9574 282 KIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCH 361 (783)
Q Consensus 282 ~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~f 361 (783)
+.+.++||++|.||.|++.++|.+||||+.|.++||.++ +++++|+||+|++++.++++++.||++||+|++++|+||
T Consensus 178 ~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~F 255 (421)
T 1ses_A 178 DFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAF 255 (421)
T ss_dssp HHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEE
T ss_pred HHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCee
Confidence 999999999999999999999999999999999999984 478999999999999999999999999999999999999
Q ss_pred ecCCCC---CCCCcccceeEEEeceeEecCc--hhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHH
Q psy9574 362 RNESSG---SLHGMMRTRSFIQDDGHIFCTK--SQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLA 436 (783)
Q Consensus 362 R~E~~g---~~~GL~R~ReF~q~d~~~f~~~--~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~ 436 (783)
|+|.++ |++||+|+|||+|.|+|+||.+ +++++++.+++.++.++|+.|||++..+.+++++..
T Consensus 256 R~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~t~dlg----------- 324 (421)
T 1ses_A 256 RSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMG----------- 324 (421)
T ss_dssp CCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCHHHHC-----------
T ss_pred cCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCccCC-----------
Confidence 999842 7999999999999999999999 889999999999999999999998555676664321
Q ss_pred HHHHHHHHHhcCCceeecCCCCCcccccEEEEeecC--CCCeeeecceeeecCcccccCceeeecCCcccccEEEeeccc
Q psy9574 437 ENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDS--IGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAII 514 (783)
Q Consensus 437 ~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~--~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~ 514 (783)
.++.....+|++++.. +...++|+++ .||+ ++|++++|.+.+|+ |.++| ++.
T Consensus 325 --------------------~~a~~~~DiE~w~p~~~~~~ei~s~s~~-~Dfq-arr~~i~y~~~~~~---~~~vh-tln 378 (421)
T 1ses_A 325 --------------------PGKWRQVDIEVYLPSEGRYRETHSCSAL-LDWQ-ARRANLRYRDPEGR---VRYAY-TLN 378 (421)
T ss_dssp --------------------TTCSEEEEEEEEETTTTEEEEEEEEEEE-ETHH-HHHHTCEEECTTSC---EEECE-EEE
T ss_pred --------------------chhhhcccHhheechhccchheeecccc-chhh-hhhhcCEeECCCCC---EEEEE-ecC
Confidence 1111222355555442 2234667764 8999 89999999988763 55667 566
Q ss_pred cc---HHHHHHHHHHhcCC-----CCCCCCCCce
Q psy9574 515 GS---LERFIAILVENYSG-----AMPLWLAPIQ 540 (783)
Q Consensus 515 G~---ieRli~~LlE~~~~-----~~P~~lap~q 540 (783)
|+ ++|+|++|+|+|++ .||++|+||.
T Consensus 379 gs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 379 NTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp EEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred CccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 66 99999999999974 7999999996
No 32
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=1.6e-44 Score=400.66 Aligned_cols=289 Identities=13% Similarity=0.233 Sum_probs=243.5
Q ss_pred cchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhcccccccc-----cCCCceEeccChhHHHHHHHHHHHHHHHH
Q psy9574 212 KKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQE-----ESPGLIFWHPKGYIILQEIKKYMRKIYKY 286 (783)
Q Consensus 212 ~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~-----~~~G~~~~lP~g~~l~~~l~~~~~~~~~~ 286 (783)
+...|.||... .++++||++||++||||+|++ .++|+++|+|.|++++++|++++++.+.+
T Consensus 159 n~~v~~~g~~~--------------~~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~ 224 (484)
T 3lss_A 159 NTVVRTFGNTT--------------KRAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVK 224 (484)
T ss_dssp CEEEEEESCTT--------------CCCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCC--------------CCCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 55666677642 146899999999999999984 38999999999999999999999999999
Q ss_pred cCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC
Q psy9574 287 NGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS 366 (783)
Q Consensus 287 ~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~ 366 (783)
+||++|.||.|.+.++|..||||+.|.++||+++.++++++|+||+|++++.++++.+.||++||+|++++|+|||+|++
T Consensus 225 ~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eag 304 (484)
T 3lss_A 225 RGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAG 304 (484)
T ss_dssp TTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTT
T ss_pred cCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCC
Confidence 99999999999999999999999999999999976678999999999999999999999999999999999999999984
Q ss_pred --C-CCCCcccceeEEEeceeEecCchh--HHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHH
Q psy9574 367 --G-SLHGMMRTRSFIQDDGHIFCTKSQ--IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLR 441 (783)
Q Consensus 367 --g-~~~GL~R~ReF~q~d~~~f~~~~~--~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~ 441 (783)
| .++||+|+|||+|.|+|+||.+++ +.+++.++++++.++|+.|||++..+.+++++..
T Consensus 305 s~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg---------------- 368 (484)
T 3lss_A 305 AHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALN---------------- 368 (484)
T ss_dssp CSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCC----------------
T ss_pred cCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccC----------------
Confidence 2 569999999999999999999998 9999999999999999999999777787776532
Q ss_pred HHHHhcCCceeecCCCCCcccccEEEEeecCCCC--eeeecceeeecCcccccCceeeecC------CcccccEEEeecc
Q psy9574 442 EAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGR--SWQCGTIQIDFSMPHRLGAEYIAEN------NTRKTPVMLHRAI 513 (783)
Q Consensus 442 ~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~--~~~~g~~~lD~~~~~r~d~~y~~~~------g~~~~p~~i~~~~ 513 (783)
.++.....+|++++...+. .+.|+ ++.||| ++|++++|.+.. |+..++++++++.
T Consensus 369 ---------------~~a~~~yDiE~w~P~~~~~~EIsS~S-nc~dyq-Arr~~iry~~~~~~~~~~~~~~~vhtlNgt~ 431 (484)
T 3lss_A 369 ---------------NAAAKKYDLEAWFPASGAFRELVSCS-NCTDYQ-SQSVNCRYGPNLRGTAAQNVKEYCHMLNGTL 431 (484)
T ss_dssp ---------------SSCSEEEEEEEEETTTTEEEEEEEEE-ECTTHH-HHHHTCEESSCCC----CCSCEECEEEEEEE
T ss_pred ---------------CchhheechheecCCCCCeeEEEEec-Cccccc-ccccceEEeccccccccCCCceeeeEEeccc
Confidence 1222333467777653322 22233 356998 799999998763 4556777777544
Q ss_pred cccHHHHHHHHHHhcCC----CCCCCCCCce--EEEEecCc
Q psy9574 514 IGSLERFIAILVENYSG----AMPLWLAPIQ--VMILNISK 548 (783)
Q Consensus 514 ~G~ieRli~~LlE~~~~----~~P~~lap~q--v~Vi~~~~ 548 (783)
++ ++|+|+||+|+|+. .+|..|+||. .-+||...
T Consensus 432 ~a-v~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~ 471 (484)
T 3lss_A 432 CA-ITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFEN 471 (484)
T ss_dssp EE-HHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCC
T ss_pred hH-HHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCc
Confidence 44 99999999999985 8999999987 67777764
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=2.7e-43 Score=399.17 Aligned_cols=284 Identities=16% Similarity=0.238 Sum_probs=239.7
Q ss_pred CCCcccchhhhhccccccchhhHHHHHHHHhhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHH
Q psy9574 207 GNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRK 282 (783)
Q Consensus 207 ~d~~~~~l~Ri~G~~~~~~~~l~~~~~~~~~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~ 282 (783)
||++.+...|.||.... ..++++||++||++||||+ +.. ++|+++|+|.|++++++|++++++
T Consensus 221 g~e~~n~~~~~~g~~~~------------~~~~~~dH~~lg~~l~l~d-~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~ 287 (536)
T 3err_A 221 GGEEANREIKRVGGPPE------------FSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMD 287 (536)
T ss_dssp SSGGGCEEEEEESCCCC------------CSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCC------------CCCCCCCHHHHHHHcCCcc-cccccCCCCceeEEcCHHHHHHHHHHHHHHH
Confidence 35555666677785321 1356899999999999999 663 899999999999999999999999
Q ss_pred HHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceee
Q psy9574 283 IYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHR 362 (783)
Q Consensus 283 ~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR 362 (783)
.+.+.||++|.||.|.+.++|.+||||+.|.++||+++ +++++|+||+|++++.++++.+.||++||+|++++|+|||
T Consensus 288 ~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR 365 (536)
T 3err_A 288 FMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFR 365 (536)
T ss_dssp HHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEEC
T ss_pred HHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEeccccc
Confidence 99999999999999999999999999999999999984 3689999999999999999999999999999999999999
Q ss_pred cCCC--C-CCCCcccceeEEEeceeEecCch--hHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHH
Q psy9574 363 NESS--G-SLHGMMRTRSFIQDDGHIFCTKS--QIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAE 437 (783)
Q Consensus 363 ~E~~--g-~~~GL~R~ReF~q~d~~~f~~~~--~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~ 437 (783)
+|.+ | +++||+|+|||+|.|+|+||.++ ++.+++.++++++.++|+.|||++..+.+++++.
T Consensus 366 ~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgdl------------- 432 (536)
T 3err_A 366 SEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDM------------- 432 (536)
T ss_dssp CCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTS-------------
T ss_pred CCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCccc-------------
Confidence 9984 3 68999999999999999999998 8999999999999999999999977777777542
Q ss_pred HHHHHHHHhcCCceeecCCCCCcccccEEEEeecCCCCe--eeecceeeecCcccccCceeeecCCcccccEEEeecccc
Q psy9574 438 NSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRS--WQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG 515 (783)
Q Consensus 438 ~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~~~~d~~g~~--~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G 515 (783)
|.++.....+|+++++..+.. +.|+ ++.||+ ++|++++|.+.+|+..+++++.++.++
T Consensus 433 ------------------g~~a~~~yDiE~w~p~~~~~~Ei~s~s-n~~dyq-arr~~iry~~~~~k~~~vhtlngs~~a 492 (536)
T 3err_A 433 ------------------GPGKWRQVDIEVYLPSEGRYRETHSCS-ALLDWQ-ARRANLRYRDPEGRVRYAYTLNNTALA 492 (536)
T ss_dssp ------------------CTTCSEEEEEEEEEGGGTEEEEEEEEE-EEETHH-HHHHTCEEECTTSCEEECEEEEEEEEE
T ss_pred ------------------CCChhheeeeeEecCCCCCeEEEEEec-CccChh-hcccCeEEECCCCCeEeeeEEeccchh
Confidence 222333344677776643222 2232 356998 799999999998888888887754445
Q ss_pred cHHHHHHHHHHhcCC-----CCCCCCCCc
Q psy9574 516 SLERFIAILVENYSG-----AMPLWLAPI 539 (783)
Q Consensus 516 ~ieRli~~LlE~~~~-----~~P~~lap~ 539 (783)
++|++++|+|+|++ .+|+.|+||
T Consensus 493 -~~R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 493 -TPRILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp -ETHHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred -HHHHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 99999999999874 788888887
No 34
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=2.5e-43 Score=390.50 Aligned_cols=278 Identities=15% Similarity=0.224 Sum_probs=234.9
Q ss_pred hhhcccHHHHhhhccccccccc----CCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccC
Q psy9574 237 EAEKRDHRKLGKQLNLFHFQEE----SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENY 312 (783)
Q Consensus 237 ~~~~~~h~~l~~~l~l~~~~~~----~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~ 312 (783)
.++++||++||++||||+|++. ++|+++|+|.|++++++|++++++.+.++||++|.||.|.+.++|.+||||+.|
T Consensus 148 ~~~~~dH~elg~~l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f 227 (485)
T 3qne_A 148 APAKLSHHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQF 227 (485)
T ss_dssp CBCCSCHHHHHHHTTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHH
T ss_pred CCCccCHHHHHhhcCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCcccc
Confidence 4568999999999999999863 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEeeeCCceEEEcCCCcHHHHHHHhccccc--CCCCCceEEEecceeecCCCC---CCCCcccceeEEEeceeEec
Q psy9574 313 KDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHS--YRDLPLRFGEFGQCHRNESSG---SLHGMMRTRSFIQDDGHIFC 387 (783)
Q Consensus 313 ~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s--~~~LPlr~~~~g~~fR~E~~g---~~~GL~R~ReF~q~d~~~f~ 387 (783)
.++||.+...+++++|+||++.+++.++++.+.+ |++||+|++++++|||+|.++ +++||+|+|||+|.|+|+||
T Consensus 228 ~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~ 307 (485)
T 3qne_A 228 DEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLT 307 (485)
T ss_dssp TTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEE
T ss_pred ccceEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEe
Confidence 9999999655789999999999999999998877 999999999999999999975 68999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCCceeecCCCCCcccccEEE
Q psy9574 388 TKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEY 467 (783)
Q Consensus 388 ~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~g~~~y~g~~~e~ 467 (783)
+++++.+++.++++++.++|+.|||++..+.+++++. |.++.....+|+
T Consensus 308 ~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdl-------------------------------g~~a~~tyDiE~ 356 (485)
T 3qne_A 308 EPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGEL-------------------------------NNAAAKKYDLEA 356 (485)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGC-------------------------------CTTCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCccc-------------------------------CCchhhheeeeE
Confidence 9999999999999999999999999977777776542 222333335677
Q ss_pred EeecCCCCe--eeecceeeecCcccccCceeeec---CCcccccEEEeecccccHHHHHHHHHHhcCC----CCCCCCCC
Q psy9574 468 HLKDSIGRS--WQCGTIQIDFSMPHRLGAEYIAE---NNTRKTPVMLHRAIIGSLERFIAILVENYSG----AMPLWLAP 538 (783)
Q Consensus 468 ~~~d~~g~~--~~~g~~~lD~~~~~r~d~~y~~~---~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~----~~P~~lap 538 (783)
++++..+.. +.|+ ++.||| ++|++++|.+. +|+..+++++.++.+ .++|+|+||+|+|++ .+|+.|+|
T Consensus 357 w~P~~~~~~Eiss~S-nc~dyq-Arr~~iry~~~~~~~~~~~~vhtlNgt~l-av~R~l~AiLEn~q~~dGi~iP~~L~p 433 (485)
T 3qne_A 357 WFPFQQEYKELVSCS-NCTDYQ-SRNLEIRCGIKQQNQQEKKYVHCLNSTLS-ATERTICCILENYQKEDGLVIPEVLRK 433 (485)
T ss_dssp EETTTTEEEEEEEEE-ECTTHH-HHHTTCEECC------CCCBCEEEEEEEE-EHHHHHHHHHHHSEETTEEECCHHHHT
T ss_pred eccCCCceeEEEEec-CCcCcc-ccccceEEecccccCCCceeeEEEecchh-HHHHHHHHHHHhcCCCCceecChhhcC
Confidence 776643222 3333 446888 79999999876 466677777764433 499999999999874 89999999
Q ss_pred ceE---EEEecCc
Q psy9574 539 IQV---MILNISK 548 (783)
Q Consensus 539 ~qv---~Vi~~~~ 548 (783)
|.. .+||...
T Consensus 434 y~~g~~~~i~~~~ 446 (485)
T 3qne_A 434 YIPGEPEFIPYIK 446 (485)
T ss_dssp TSTTCCSEEECCC
T ss_pred ccCCcceEeeccc
Confidence 964 6788763
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=4.5e-38 Score=347.88 Aligned_cols=311 Identities=14% Similarity=0.086 Sum_probs=243.3
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHH
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPG 335 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~ 335 (783)
+.++|++||+|.++.+++.|++.+++.++++||++|.||+|++.++|.++| +.+.++||++ |++|+.++|||+.|++
T Consensus 11 ~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~ 88 (400)
T 3od1_A 11 EKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAP 88 (400)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHH
T ss_pred cCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHH
Confidence 458999999999999999999999999999999999999999999999886 4678999999 8899999999999999
Q ss_pred HHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeE
Q psy9574 336 HIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKI 415 (783)
Q Consensus 336 ~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~ 415 (783)
++++++++. .++++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.++...+ .|++.++.++|+.||++++
T Consensus 89 ~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~--~~~g--R~Ref~Q~g~ei~G~~~~~aD--aEvi~l~~~~l~~lgl~~~ 161 (400)
T 3od1_A 89 IARLVASSL-KDRAYPLRLAYQSNVYRAQQ--NEGG--KPAEFEQLGVELIGDGTASAD--GEVIALMIAALKRAGLSEF 161 (400)
T ss_dssp HHHHHHHHC-SSSCSCEEEEEEEEEECCCC-----C--CCSEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHhhc-ccCCCCeEEEEEcCEEeCCC--CCCC--CCCccEEeEEEEECCCChHhH--HHHHHHHHHHHHHCCCCce
Confidence 999998765 35789999999999999997 7888 999999999999999876544 6789999999999999889
Q ss_pred EEEeecCCC-----------------------CC-----------C-----------------CChhhHHHH--------
Q psy9574 416 KIKLALRPN-----------------------KR-----------I-----------------GENNIWDLA-------- 436 (783)
Q Consensus 416 ~i~l~~~~~-----------------------~~-----------~-----------------g~~~~~~~~-------- 436 (783)
.+.+|++.. +. . |..+..+.+
T Consensus 162 ~i~l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~~~ 241 (400)
T 3od1_A 162 KVAIGHVGYVNALLMDVVGNEQRADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEK 241 (400)
T ss_dssp EEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCSHH
T ss_pred EEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcChh
Confidence 999986521 00 0 111111111
Q ss_pred ----H---HHHHHHHHhcCCc--eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcc
Q psy9574 437 ----E---NSLREAISSSGVT--WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTR 503 (783)
Q Consensus 437 ----~---~~l~~~l~~~g~~--~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~ 503 (783)
. +.+.+.|+..|++ +.+++ |.+||+|++||+...+ .|. .+||| ||||- .....|+.
T Consensus 242 ~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~vFe~~~~~-~g~-~i~~G--------GRYD~-L~~~fG~~ 310 (400)
T 3od1_A 242 GKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVVFEGYGNR-LGV-PLCSG--------GRYDE-LLSKFHRP 310 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEEEEEEETT-CSS-EEEEE--------EECTT-HHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeEEEEEECC-CCC-eeecc--------cccch-hhhccCCC
Confidence 1 3455667888886 66666 7799999999997643 443 67887 99996 35666764
Q ss_pred cccEEEeecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHH
Q psy9574 504 KTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRL 583 (783)
Q Consensus 504 ~~p~~i~~~~~G~ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~ 583 (783)
.|++ |+..++||++.+|.+. +..+. .| +|+| +.+++....|.++++.||++|++|+++..+.. .. .+
T Consensus 311 -~pav---GfaiglerL~~~l~~~--~~~~~--~~-~v~v-~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~-~~--~~ 377 (400)
T 3od1_A 311 -AQAT---GFGVRIDLLVEALNGE--IISNG--HE-QTCI-LFSNERRFEAIELARKKRANGEAVVLQDLAGV-TD--VD 377 (400)
T ss_dssp -CCEE---EEEEEHHHHHHHHCC----------CC-CEEE-EECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC-SC--HH
T ss_pred -CCEE---EEEeeHHHHHHHHHhc--CCCCC--CC-eEEE-EECcHHHHHHHHHHHHHHHCCCEEEEEecCCh-hH--HH
Confidence 8999 4444599999887443 22221 12 2554 47777888999999999999999999876432 11 18
Q ss_pred hhcCCCCEEEEEccccc
Q psy9574 584 HSLEKLPYIIIVGNKEL 600 (783)
Q Consensus 584 A~~~gip~~iivG~~e~ 600 (783)
|...|+..++++..++-
T Consensus 378 ~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 378 AMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp HHHTTSSEEEEECSCC-
T ss_pred HHHcCCCEEEEEecCCC
Confidence 88889999999987664
No 36
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=3.4e-35 Score=330.43 Aligned_cols=264 Identities=16% Similarity=0.207 Sum_probs=199.8
Q ss_pred HHHhhhcccccccccCCCceEeccChhHHHHHHHHHHHHH-HHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--
Q psy9574 244 RKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKI-YKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK-- 320 (783)
Q Consensus 244 ~~l~~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~-~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~-- 320 (783)
..+..+.|++. +-.++|+++|+|.|++++++|++++++. +.++||++|.||.|++.++|.+||||+.|.++||.+.
T Consensus 206 ~~ll~raG~i~-~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~ 284 (522)
T 2cja_A 206 TQAMMKEGWLK-RGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPP 284 (522)
T ss_dssp HHHHHHTTSEE-ECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECB
T ss_pred HHHHHHCCCee-eeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecC
Confidence 45666667553 3369999999999999999999999975 8999999999999999999999999999999999983
Q ss_pred e-----------------------------CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEE-ecceeecCCCCCCC
Q psy9574 321 S-----------------------------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGE-FGQCHRNESSGSLH 370 (783)
Q Consensus 321 ~-----------------------------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~-~g~~fR~E~~g~~~ 370 (783)
. +++.++||||+|++++.+|++.+.||++||++++| +|+|||+| +|+++
T Consensus 285 ~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~ 363 (522)
T 2cja_A 285 QTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIH 363 (522)
T ss_dssp SCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCC
T ss_pred CccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCC
Confidence 1 36789999999999999999999999999999999 99999999 56789
Q ss_pred CcccceeEEEeceeEecCchhHHHHHHHHH-HHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q psy9574 371 GMMRTRSFIQDDGHIFCTKSQIKNEIVVFN-ELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGV 449 (783)
Q Consensus 371 GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~-~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l~~~g~ 449 (783)
||+|+|||+|.|+|+||+++++.+++.+++ ..+..+++.|||+ . +.+.. +..++|.+.... . .+.
T Consensus 364 GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~-v~~~~-D~f~~a~~G~~G----~----~q~--- 429 (522)
T 2cja_A 364 GIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-W-RKARV-TPWFMAQEGLLG----L----AEE--- 429 (522)
T ss_dssp CTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-E-EEEEC----------------------------
T ss_pred CCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-E-Eeecc-CCcccccccccc----c----hhc---
Confidence 999999999999999999999999999999 8999999999998 3 44422 111111000000 0 000
Q ss_pred ceeecCCCCCcccccEEEEeec--CCCCeeeeccee--eecCcccccCceeeecCCcccccEEEeecccc-cHHHHHHHH
Q psy9574 450 TWEEFPGEGAFYGPKIEYHLKD--SIGRSWQCGTIQ--IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIG-SLERFIAIL 524 (783)
Q Consensus 450 ~~~~~~g~~~y~g~~~e~~~~d--~~g~~~~~g~~~--lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G-~ieRli~~L 524 (783)
. +.....+|+.++. +.++...|+++. .|++ ++||+++|. +|+ .+++ +++| +++|+++||
T Consensus 430 -----~---a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~q-arr~~Ir~~--~~~--~vht---~~~Glgv~Rli~Al 493 (522)
T 2cja_A 430 -----N---TVGTTDYEACLPYRGPDGEWLEFQNVSINGDKY-PKGFNVKLQ--SGD--ELWS---GCSGVGLERWAAVF 493 (522)
T ss_dssp -----C---CCEEEEEEECCGGGCTTCCCEEEEEEEECTTHH-HHHHTCEET--TCC--CEEE---EEEEEEHHHHHHHH
T ss_pred -----c---ccceEEEEEecccccCCCcEEEEeeechhhhhc-ccccceEcC--CCC--EEEE---eccCcHHHHHHHHH
Confidence 0 1111123444442 344445555443 4665 899999765 343 4444 3334 499999999
Q ss_pred HHhcCC---CCCCCCCCc
Q psy9574 525 VENYSG---AMPLWLAPI 539 (783)
Q Consensus 525 lE~~~~---~~P~~lap~ 539 (783)
+|+|++ .||..+.|+
T Consensus 494 LE~~~~~~~~wP~~lr~y 511 (522)
T 2cja_A 494 LAQKGLDPANWPEEFRNR 511 (522)
T ss_dssp HHHHCSCGGGSCHHHHHH
T ss_pred HHHcCCCCCcCchHHHHh
Confidence 999975 788777665
No 37
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=1.2e-33 Score=306.86 Aligned_cols=246 Identities=13% Similarity=0.119 Sum_probs=194.5
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhh--CCcccCCCCceEe-eeCCceEEEcCCCc
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT--GHWENYKDNMFTT-KSENRFYALKPMNC 333 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s--g~~~~~~~~my~~-~~~~~~~~LrP~~~ 333 (783)
+.++|++||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+| |+|+.+.++||++ |++|+.++|||+.|
T Consensus 23 ~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T 102 (344)
T 1z7m_A 23 LLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFT 102 (344)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSH
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCc
Confidence 34999999999999999999999999999999999999999999999986 9999999999998 88999999999999
Q ss_pred HHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 334 PGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 334 ~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++++++++.. ++++|+|+||+|+|||+|+ |+.| |+|||+|+|+|+||.++...+ .|++.++.++|+.||++
T Consensus 103 ~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~--p~~g--R~REF~Q~g~ei~g~~~~~aD--aEvi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 103 LPLVRLYSQI---KDSTSARYSYFGKIFRKEK--RHKG--RSTENYQIGIELFGESADKSE--LEILSLALQVIEQLGLN 173 (344)
T ss_dssp HHHHHHHHTC---CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHH--HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHhc---CCCCCeEEEEECcEEccCC--CCCC--CcceeEEEEEEEEcCCCcHHH--HHHHHHHHHHHHHCCCC
Confidence 9999999876 5689999999999999997 7888 999999999999998875444 57899999999999998
Q ss_pred eEEEEeecCC---------CCC----------------------C----------------CChhhHHHH----------
Q psy9574 414 KIKIKLALRP---------NKR----------------------I----------------GENNIWDLA---------- 436 (783)
Q Consensus 414 ~~~i~l~~~~---------~~~----------------------~----------------g~~~~~~~~---------- 436 (783)
++.+.+|++. ... . |+.+..+.+
T Consensus 174 ~~~i~l~~~gi~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~g~~~~l~~~~~l~~~~~~~ 253 (344)
T 1z7m_A 174 KTVFEIGSAKFFQRLCQLADGSTELLTELLLKKDLSGLNAFIEKNNFSKELRGLLKEIFITNELSRLENLVTNTKDDVLI 253 (344)
T ss_dssp SEEEEEEEHHHHHHHHHHTTTCHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHHHHHHTTCCCHHHHHHHHHHTTCHHHH
T ss_pred cEEEEECCHHHHHHHhCCCHHHHHHHHHHHHhhCHHHHHHHHHhcCCCHHHHHHHHHHHhcCCHHHHHHHHHhhcchhhH
Confidence 8999999762 110 0 111111111
Q ss_pred --H---HHHHHHHHhcCCceeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccE
Q psy9574 437 --E---NSLREAISSSGVTWEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPV 507 (783)
Q Consensus 437 --~---~~l~~~l~~~g~~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~ 507 (783)
. +.+.+.|+..| .+.+++ |.+||+|++||+...+ .| ..+||| ||||- .....| ...|+
T Consensus 254 ~~l~~l~~l~~~L~~~g-~~~~D~~lvrgldYYtG~vFe~~~~~-~~-~~i~~G--------GRYD~-L~~~fg-~~~pa 320 (344)
T 1z7m_A 254 SSFDQLKEFSEKLSMIK-PIIIDLGMVPKMDYYTDLMFKAYSSA-AN-QPILSG--------GRYDQ-LLSNFQ-EEAFA 320 (344)
T ss_dssp HHHHHHHHHHHHHTTTS-CCEECTTCCCSSTTCCSEEEEEEETT-EE-EEEEEE--------EECHH-HHHTSS-SCCCC
T ss_pred HHHHHHHHHHHHHhhCC-CEEEeCCCCCCCccCCCeEEEEEECC-CC-CeEeeC--------ccHHH-HHHHhC-CCCCe
Confidence 1 23445566677 777766 6799999999998643 23 367787 99996 356677 67899
Q ss_pred EEeecccccHHHHHHHHHHh
Q psy9574 508 MLHRAIIGSLERFIAILVEN 527 (783)
Q Consensus 508 ~i~~~~~G~ieRli~~LlE~ 527 (783)
+ |+..++||++.+|.++
T Consensus 321 v---Gfaiglerl~~~l~~~ 337 (344)
T 1z7m_A 321 I---GFCCHMDTILKALERQ 337 (344)
T ss_dssp E---EEEEEHHHHHHHHHHH
T ss_pred E---EEEEEHHHHHHHHHhc
Confidence 9 4444599999988654
No 38
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=1.3e-32 Score=301.40 Aligned_cols=256 Identities=14% Similarity=0.129 Sum_probs=199.5
Q ss_pred cccccccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCC-CCceEe-eeCCceEEEc
Q psy9574 252 LFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYK-DNMFTT-KSENRFYALK 329 (783)
Q Consensus 252 l~~~~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~-~~my~~-~~~~~~~~Lr 329 (783)
||..-+.++|++||+|.++.+++.|++.+++.+.++||++|.||+|++.++|.++|+ .+. ++||++ |.+|+.++||
T Consensus 19 ~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~--~~~~~~my~~~D~~g~~l~LR 96 (373)
T 3rac_A 19 VRGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARS--PESSRDWIRLFDGGGDAVALR 96 (373)
T ss_dssp CCCCCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSC--TTSCCCCCBCCCCSSSCEEEC
T ss_pred HHhcCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCC--ccchhceEEEECCCCCEEEEC
Confidence 445556799999999999999999999999999999999999999999999999874 677 899998 8899999999
Q ss_pred CCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCC----CCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHH
Q psy9574 330 PMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGS----LHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHK 405 (783)
Q Consensus 330 P~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~----~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~ 405 (783)
||.|++++++++++..+ +++|+|+||+|+|||+|++|. +.| |+|||+|+|+|+||.+++...+ .|++.++.+
T Consensus 97 pd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aD-aEvi~l~~~ 172 (373)
T 3rac_A 97 PEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRTDDPASLSWASG--KAAESTQVGIERIGEEASVDVD-MDVLRLLHE 172 (373)
T ss_dssp SSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC--------------CEEEEEEEEEECSSCCCHHHH-HHHHHHHHH
T ss_pred CcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccCCCcccccccCC--ccceeEEeeeEEECCCCCHHHH-HHHHHHHHH
Confidence 99999999999887643 689999999999999998422 667 9999999999999998544443 588999999
Q ss_pred HHhhcCCeeEEEEeecCCC-------------------------------------------------CCCC--------
Q psy9574 406 VYNEFGFKKIKIKLALRPN-------------------------------------------------KRIG-------- 428 (783)
Q Consensus 406 i~~~lGl~~~~i~l~~~~~-------------------------------------------------~~~g-------- 428 (783)
+|+.||++++.+.+|++.. ...|
T Consensus 173 ~l~~lgl~~~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l~~~~~~~l~~l~~l~g~~~~~~~~ 252 (373)
T 3rac_A 173 ASAAAGVRHHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLHAAKDVDLLANLLTWSPAERDAAKR 252 (373)
T ss_dssp HHHHHTCCSCEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHHCSCCSCHHHHHHHBCCCSSCTTSB
T ss_pred HHHHcCCCceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhcCHHHHHHHHHHHHHhCCccccccc
Confidence 9999999889999997531 0012
Q ss_pred ----ChhhHH----------------HHH---HHHHHHHHhcCC---ceeecC----CCCCcccccEEEEeecCCCCeee
Q psy9574 429 ----ENNIWD----------------LAE---NSLREAISSSGV---TWEEFP----GEGAFYGPKIEYHLKDSIGRSWQ 478 (783)
Q Consensus 429 ----~~~~~~----------------~~~---~~l~~~l~~~g~---~~~~~~----g~~~y~g~~~e~~~~d~~g~~~~ 478 (783)
..+..+ .+. +.+.+.|+..|+ .+.+++ |.+||+|++||+...+ .|. .+
T Consensus 253 ~~~~~~~~l~~~~~l~~~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRgldYYTG~vFe~~~~~-~g~-~i 330 (373)
T 3rac_A 253 SREASDRELEALLRDAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRELDYYTGLVFEMFAPG-VGA-PI 330 (373)
T ss_dssp CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCSCTTCCSEEEEEECTT-CSS-CS
T ss_pred cccccHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCCCCccCCeEEEEEECC-CCC-eE
Confidence 111111 111 334456777888 677766 7799999999998654 343 66
Q ss_pred ecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhc
Q psy9574 479 CGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENY 528 (783)
Q Consensus 479 ~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~ 528 (783)
||| ||||-. ....|.. .|++ |+..++||++.+|.++.
T Consensus 331 ~~G--------GRYD~L-~~~fG~~-~pAv---GFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 331 AQG--------GRYDEL-LAQFGAG-APAV---GFAFEVERVMAVLEAQE 367 (373)
T ss_dssp EEE--------EECTTT-TGGGTCC-CCCE---EEEEEHHHHHHHHHHHH
T ss_pred eec--------ccccHH-HHhhCCC-CCeE---EEEEEHHHHHHHHHhcc
Confidence 777 999963 5566654 8999 44445999999987653
No 39
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.97 E-value=7e-31 Score=276.51 Aligned_cols=245 Identities=13% Similarity=0.163 Sum_probs=184.7
Q ss_pred ccCCCceEeccChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeee---------------
Q psy9574 257 EESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKS--------------- 321 (783)
Q Consensus 257 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~--------------- 321 (783)
..++|++.+.+.+++|+++|++++++ ..+.||++|.||.|.+.++|++||||++|.++||.+..
T Consensus 51 ~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~ 129 (346)
T 3mf2_A 51 MGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRF 129 (346)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHH
T ss_pred cCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhh
Confidence 34799999999999999999999999 98999999999999999999999999999999998732
Q ss_pred ----------CCceEEEcCCCcHHHHHHHhcc-cccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch
Q psy9574 322 ----------ENRFYALKPMNCPGHIQIYNSN-FHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS 390 (783)
Q Consensus 322 ----------~~~~~~LrP~~~~~~~~~~~~~-~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~ 390 (783)
.+.+++|+||+|++++.+|++. ..+ +.|+|+..+|+|||+|.+ +||+|+|||+|.|+++||+++
T Consensus 130 ~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tpE 204 (346)
T 3mf2_A 130 DAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPD 204 (346)
T ss_dssp HTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESHH
T ss_pred ccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCHH
Confidence 1458999999999999999975 555 459999999999999994 699999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCCCCCCChhhHHHHHHHHHHHH-HhcCCceee---cCCCCCcccccEE
Q psy9574 391 QIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAI-SSSGVTWEE---FPGEGAFYGPKIE 466 (783)
Q Consensus 391 ~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~~~~g~~~~~~~~~~~l~~~l-~~~g~~~~~---~~g~~~y~g~~~e 466 (783)
++.+++.++++.+.++|+.|||+ +.+.+.+.+ ++|.. ..+.... ......|++ .|+.+.| .|
T Consensus 205 qs~~e~e~l~~~ae~il~~LgLp-yrv~~~~D~--~f~~~-------G~l~~~~Q~~~~~kyDlevw~p~~~~y----~E 270 (346)
T 3mf2_A 205 DVSDFRERWMVRAQAIARDLGLT-FRVDYASDP--FFGRV-------GQMKAVSQKQQQLKFELLIPLRSEEQP----TA 270 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-CEEEECCCC--CCHHH-------HHHHHHHHHHTTCEEEEEECSSCSSSC----EE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-EEEEEccCC--CcCcc-------cchhhhccccccceEEEEEEcCCCCCe----eE
Confidence 99999999999999999999998 666655322 11111 0110000 011222221 2233322 11
Q ss_pred EEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHHHHHHHHhcCC---CCCCCCCC
Q psy9574 467 YHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG---AMPLWLAP 538 (783)
Q Consensus 467 ~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRli~~LlE~~~~---~~P~~lap 538 (783)
+ ..|+ ++.||| ++|++++|.+ | ...+..+ ..+ +++|++.||+|+|+. .||..+.+
T Consensus 271 i---------sS~S-n~~dfq-arR~~Ir~~~--~--~~vHT~~-sgl-av~R~l~AiLen~G~d~~~wP~~lr~ 328 (346)
T 3mf2_A 271 C---------MSFN-YHREHF-GTTWGIQDAN--G--EPAHTGC-VAF-GMDRLAVAMFHTHGTDLSAWPAKVRD 328 (346)
T ss_dssp E---------EEEE-ECTTHH-HHHHTCBCTT--S--SBCEEEE-EEE-EHHHHHHHHHHHHCSCGGGSCHHHHH
T ss_pred E---------Eeee-cccchh-hhhhcceeCC--C--CeEEEcc-cch-HHHHHHHHHHHHcCCCccccCHHHHH
Confidence 1 2222 346777 7999998863 3 2433322 112 399999999999985 78865443
No 40
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=99.96 E-value=1.2e-30 Score=225.53 Aligned_cols=97 Identities=68% Similarity=1.081 Sum_probs=87.9
Q ss_pred HHhhhcccccceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccC
Q psy9574 686 HEVKMKQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQF 765 (783)
Q Consensus 686 ~~~~kk~~~~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 765 (783)
+++||||+.+.+|||+|+|+|++|||++|++||++||++|++|||+|+|||||++|+|.|.++|++|.++|+++|.+++.
T Consensus 2 keakkkqk~~~vKEikl~p~Id~HD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~ 81 (100)
T 2ife_A 2 EFQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESF 81 (100)
T ss_dssp --------CCEEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEESCC
T ss_pred chhhcccCCceeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEecC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccCeeEEEEEeecCC
Q psy9574 766 P-KIEGRQMIMILSPRKK 782 (783)
Q Consensus 766 ~-~~~g~~~~~~~~p~~~ 782 (783)
| +++|++|+|+|.|+++
T Consensus 82 p~k~eGr~m~m~l~Pkk~ 99 (100)
T 2ife_A 82 PTKIEGRQMIMVLAPKKK 99 (100)
T ss_dssp CCCCCSSCCEEEEEECCC
T ss_pred cccccCceEEEEEEeCCC
Confidence 9 9999999999999876
No 41
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=99.96 E-value=7.7e-30 Score=218.56 Aligned_cols=93 Identities=48% Similarity=0.858 Sum_probs=86.7
Q ss_pred cccccceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCccccC
Q psy9574 691 KQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEG 770 (783)
Q Consensus 691 k~~~~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g 770 (783)
||+.+++|||+|+|+|++|||++|++||++||++|++|||+|+|||||++|+|.|.++|++|.++|+++|.+|+.|+++|
T Consensus 1 kqk~~~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eG 80 (94)
T 1tig_A 1 KQKVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDG 80 (94)
T ss_dssp ----CCEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEET
T ss_pred CCccceeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhhhEEecCccccC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEeecCCC
Q psy9574 771 RQMIMILSPRKKK 783 (783)
Q Consensus 771 ~~~~~~~~p~~~~ 783 (783)
++|+|+|.|++++
T Consensus 81 r~m~m~l~Pkkk~ 93 (94)
T 1tig_A 81 RNMFLVLAPKNDN 93 (94)
T ss_dssp TEEEEEEEESCC-
T ss_pred CEEEEEEEeCCCC
Confidence 9999999998764
No 42
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=99.96 E-value=2.9e-29 Score=212.43 Aligned_cols=88 Identities=45% Similarity=0.774 Sum_probs=85.8
Q ss_pred ceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHHHHHHHHHHhcccccccccCccccCeeEEE
Q psy9574 696 LIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQMIM 775 (783)
Q Consensus 696 ~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 775 (783)
++|||+|+|+|++|||++|++||++||++|+||||+|+|||||++|+|.|.++|++|.++|+++|.+++.|+++|++|+|
T Consensus 1 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m 80 (89)
T 1i96_V 1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM 80 (89)
T ss_pred CceEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy9574 776 ILSPRKKK 783 (783)
Q Consensus 776 ~~~p~~~~ 783 (783)
+|.|+++|
T Consensus 81 ~l~Pkkkk 88 (89)
T 1i96_V 81 LLAPVKVS 88 (89)
T ss_pred EEEeCCCC
Confidence 99998765
No 43
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=7.1e-29 Score=219.63 Aligned_cols=97 Identities=18% Similarity=0.292 Sum_probs=93.9
Q ss_pred HHhhhcccccceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCccc-chHHHHHHHHHHHHhccccccccc
Q psy9574 686 HEVKMKQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMS-HQDIGFRVLERIKSDLELYSQIEQ 764 (783)
Q Consensus 686 ~~~~kk~~~~~~Kei~~~~~i~~hDl~~k~~~~~~fL~~g~~V~~~~~~~gr~~~-~~e~~~~~~~~~~~~~~~~~~~~~ 764 (783)
+++||||+.+.+|||+|+|+|++|||++|++||++||++||+|||+|+ ||||++ |+|+|.++|++|.++|+++|.+++
T Consensus 4 ~eakkkqk~~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~~~~e~g~~lL~r~~~~l~dv~~vE~ 82 (112)
T 2crq_A 4 GSSGPKTGPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAEQSEEETEEIFNQILQTMPDIATFSS 82 (112)
T ss_dssp CCCCCCCCCSCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCSCCHHHHHHHHHHHHTTSTTTCEEEE
T ss_pred hhhhcccCCceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCccccccHHHHHHHHHHHHHHhhhhhEEec
Confidence 467899999999999999999999999999999999999999999999 999999 999999999999999999999999
Q ss_pred Ccc--ccCeeEEEEEeecCCC
Q psy9574 765 FPK--IEGRQMIMILSPRKKK 783 (783)
Q Consensus 765 ~~~--~~g~~~~~~~~p~~~~ 783 (783)
.|+ ++|++|+|+|.|+++|
T Consensus 83 ~Pk~~~eGr~m~mvL~Pkkkk 103 (112)
T 2crq_A 83 RPKAIRGGTASMCVFRHLSKK 103 (112)
T ss_dssp EEEEEGGGTEEEEEEECCSSS
T ss_pred cccccCCCCEEEEEEEeCCcc
Confidence 999 8999999999998775
No 44
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=3.4e-27 Score=227.99 Aligned_cols=130 Identities=18% Similarity=0.292 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHCC-CCeEEEcCcccC-cEEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEcCHHH
Q psy9574 66 IGLNIIRHSTAHLLAYAVKNLFP-DSQIAIGPVIEN-GFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDK 143 (783)
Q Consensus 66 ~g~~~y~hS~~~lL~~A~~~l~p-~~~~~~~~s~~~-g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~~~pi~~~~~~~ee 143 (783)
+|++++|||++|||++|++++|| ++.+.+++++++ |+||||+++.++|++++.+||++||++|++|+||++.+++++|
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~e 81 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREE 81 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHH
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 68999999999999999999997 478888989876 8999999877899999999999999999999999999999999
Q ss_pred HHHHhhhcchHHHHHhhcc--CCCC-CeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 144 AIAYFDSVNEQFKKKIINL--IPNN-QEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 144 A~~~f~~~~~~~k~~Ll~~--~~~~-~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
|.++|... +++. .+++ +.|++|+||+| +|+|+||||||||+|+.|+|+++.+
T Consensus 82 A~~~f~~~-------~~~~~~~~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~~ 137 (157)
T 1v4p_A 82 AEKMFGED-------MYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRF 137 (157)
T ss_dssp HHHHHGGG-------GSCSSCCCTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEE
T ss_pred HHHhhCcc-------ccccccCCCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEEe
Confidence 99999762 3333 2332 48999999999 9999999999999999999997543
No 45
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=99.92 E-value=3.2e-26 Score=187.36 Aligned_cols=75 Identities=44% Similarity=0.731 Sum_probs=72.9
Q ss_pred CcccccccccceEEEecccCcccccCCHHHHHHHHHHhhhhhhhcCCCCCCCceEecchhHHHHHHHHHhHHhhh
Q psy9574 616 KHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFKYREKKKAHEVKM 690 (783)
Q Consensus 616 ~~~~n~~I~~~~v~li~~~g~~~~~~~~~~a~~~~~~~~~dlv~v~~~~~ppvcki~~~~~~~~~~~k~~~~~~k 690 (783)
.+++|++|++++|||||++|+++|+|++++|+++|++.++|||+|+|+++||||||||||||+||++||++++||
T Consensus 4 ~~~iNe~Ir~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevsp~a~PPVCkImDygK~~ye~~Kk~keakk 78 (78)
T 1tif_A 4 DFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK 78 (78)
T ss_dssp CCCBGGGCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHHHHHHHHHHHHHHTTC
T ss_pred ccccCcccCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEECCCCCCCEEEEecchhHHHHHHHHHHHhcC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999875
No 46
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.91 E-value=4.5e-25 Score=232.43 Aligned_cols=203 Identities=10% Similarity=-0.047 Sum_probs=155.1
Q ss_pred HHHHHHHH--HHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCC-C
Q psy9574 274 QEIKKYMR--KIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRD-L 350 (783)
Q Consensus 274 ~~l~~~~~--~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~-L 350 (783)
+.|+++++ +.+.++||++|.||+|++.++|.+ + +| .|.+|+.++||||+|++++ ++.. .+++ +
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d-~f-~d~~g~~l~LRpd~T~~~a---~~~~-~~~~~~ 69 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N-FF-LDRKGNLFSIREDFTKTVL---NHRK-RYSPDS 69 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S-CE-EETTSCEEEECCCHHHHHH---HHHT-TCTTCC
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c-cc-CCCCCCEEEeCCcChHHHH---HHHh-hcCCCC
Confidence 45778888 999999999999999999999964 2 55 4889999999999999999 4443 3667 9
Q ss_pred CceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEEeecCCC--CC--
Q psy9574 351 PLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPN--KR-- 426 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~l~~~~~--~~-- 426 (783)
|+|+||+|+|||+|+ |+. |||+|+|+|+||.+++..+ .|++.++.++|+.||++++.+.+|+++. ..
T Consensus 70 p~R~~y~g~vfR~e~--~~~-----Ref~Q~g~ei~g~~~~~~D--aEvi~l~~~~l~~lgl~~~~i~l~~~~~~~~~~~ 140 (275)
T 1usy_A 70 QIKVWYADFVYRYSG--SDL-----VAEYQLGLEKVPRNSLDDS--LEVLEIIVESASEFFEGPVIVEIGHTGVYEDLLK 140 (275)
T ss_dssp CEEEECCEEEEEEET--TEE-----EEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHHCCSCEEEEEEETTHHHHHHT
T ss_pred ceEEEEeceEEecCC--CCC-----CeeeEeCEEEecCCCchhH--HHHHHHHHHHHHHcCCCCeEEEeCCHHHHHHHHH
Confidence 999999999999998 443 9999999999999987655 7889999999999999889999998751 00
Q ss_pred -CC--------------------------------------------ChhhH------HHH---HHHHHHHHH-hcC-Cc
Q psy9574 427 -IG--------------------------------------------ENNIW------DLA---ENSLREAIS-SSG-VT 450 (783)
Q Consensus 427 -~g--------------------------------------------~~~~~------~~~---~~~l~~~l~-~~g-~~ 450 (783)
+. +.+.. +.+ .+.+.+.|+ ..| ..
T Consensus 141 ~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~l~~~~~~l~~l~~l~~~l~~~~g~~~ 220 (275)
T 1usy_A 141 EIPKDLHEKVLNLIDTKNLAEIEFLSHMKKIDLSRVEKIIEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTVS 220 (275)
T ss_dssp TSCGGGHHHHHHHHHTTCHHHHHHHHHHTCCCCTHHHHHHHHHHHCCSGGGGGTSCCCHHHHHHHHHHHHHHHHHCSSSE
T ss_pred hCCHHHHHHHHHHHHccCHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCCe
Confidence 10 00000 011 144556777 888 66
Q ss_pred eeecC----CCCCcccccEEEEeecCCCCeeeecceeeecCcccccCceeeecCCcccccEEEeecccccHHHH
Q psy9574 451 WEEFP----GEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERF 520 (783)
Q Consensus 451 ~~~~~----g~~~y~g~~~e~~~~d~~g~~~~~g~~~lD~~~~~r~d~~y~~~~g~~~~p~~i~~~~~G~ieRl 520 (783)
+.+++ |.+||+|++||+.... .+ ..+||| ||||-. ..|++ |+..++||+
T Consensus 221 ~~~D~~lvRgldYYtG~vFe~~~~~-~~-~~i~~G--------GRYD~l--------~~pav---Gfsig~er~ 273 (275)
T 1usy_A 221 VEIDLTLARTIEEYCGLIFTIYDTS-SS-RLVAAG--------GEYTVN--------GEKGV---GGSIFLEGK 273 (275)
T ss_dssp EEECCCCGGGGGTCSSEEEEEEETT-TT-EEEEEE--------EEEEET--------TEEEE---EEEEEEEEE
T ss_pred EEEeccccCCCCccCCeEEEEEECC-CC-CeEeee--------cCCCCC--------CCCEE---EEEEEeecc
Confidence 77766 6789999999998642 22 467787 999852 47888 443347764
No 47
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.83 E-value=4.5e-20 Score=213.40 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=119.4
Q ss_pred CCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcc--cCcEEEEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy9574 53 HDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVI--ENGFYYDFLYKRSFTKEDLILIEKKMIELSQK 130 (783)
Q Consensus 53 ~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~--~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~~ 130 (783)
.+..|+..--....-..+++||++|||++|++++|+. ++.+.+|. ++|+||||+...++|++++.+||++||++|++
T Consensus 580 ~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~-~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~ 658 (739)
T 2ztg_A 580 VGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGN-HVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILA 658 (739)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4455655544445556789999999999999999965 55555555 78999999987889999999999999999999
Q ss_pred CCCeEEEEcCHHHHHHHhhhcchHHHHHhhc-cCCCCCeEEEEEECCEEEeccccccCCCCCcceEEEEeecC
Q psy9574 131 NELFLKKNITRDKAIAYFDSVNEQFKKKIIN-LIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 131 ~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~-~~~~~~~v~iy~~~~~~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
|+||++.+++++||.++| +..|+. ..+.++.||+|+||+++++|+||||+|||+|+.|+|+++++
T Consensus 659 nlpV~~~~~s~eEA~~~~-------~l~L~~~~~~~~d~VRVV~IGd~~elCGGTHV~nTgeIg~fkIls~s~ 724 (739)
T 2ztg_A 659 NKPIKWEWMDRIEAERKF-------GFRLYQGGVPPGRKIRVVQVGDDVQACGGTHCRSTGEIGMLKILKVES 724 (739)
T ss_dssp TCBEEEEEEEHHHHHHHH-------CGGGGTTCCCCSSEEEEEEETTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred CCCEEEEEeCHHHHHHhC-------CHhhhcCCCCCCCeEEEEEECCeeeCcCCcCcccHhHcCcEEEEEEeE
Confidence 999999999999999976 345664 23334589999999999999999999999999999999864
No 48
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.82 E-value=1.5e-20 Score=192.92 Aligned_cols=149 Identities=16% Similarity=0.139 Sum_probs=122.2
Q ss_pred CCEEeec-ccccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCccc-CcEEEEEecCCCCCHHHHH
Q psy9574 41 NGVLVDL-SYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIE-NGFYYDFLYKRSFTKEDLI 118 (783)
Q Consensus 41 n~~~~~L-~~~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~~-~g~y~d~~~~~~~t~e~l~ 118 (783)
+|.++.. ..++..+..|+..-..+..-..+.+||++|||++|++++||.. ..|+.++ +++||||+ .++|++++.
T Consensus 65 ~g~i~H~~~~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~ 140 (241)
T 3kew_A 65 EGKVYHVLEKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIR 140 (241)
T ss_dssp TTEEEEEESSCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHH
T ss_pred CCEEEEEECCcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHH
Confidence 4443332 2356667778777666667778899999999999999999765 3667775 89999999 689999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEE
Q psy9574 119 LIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKL 197 (783)
Q Consensus 119 ~Ie~~m~~iI~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l 197 (783)
+||++||++|++|+||+..+++++||.+++.. .+.+ .. ++.||+|+||+| .++|+||||+|||+|+.|+|
T Consensus 141 ~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~-------~~~e-~~-~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI 211 (241)
T 3kew_A 141 EAEKEANRLIFENLEVKSYAPSKKELKKVKTR-------RALP-KT-DEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKI 211 (241)
T ss_dssp HHHHHHHHHHHHTCBEEEECCCTTTTTTCCCS-------SCCC-CC-SSCCCEEEETTTEEEECCSCCCSBSGGGCCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEcCHHHHHhcChh-------hcCC-cc-CCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEE
Confidence 99999999999999999999999999886521 1111 12 348999999998 89999999999999999999
Q ss_pred EeecC
Q psy9574 198 IKLAG 202 (783)
Q Consensus 198 ~~~~~ 202 (783)
++.++
T Consensus 212 ~~~~~ 216 (241)
T 3kew_A 212 RRWEK 216 (241)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99876
No 49
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.80 E-value=2.5e-19 Score=181.00 Aligned_cols=125 Identities=16% Similarity=0.081 Sum_probs=109.8
Q ss_pred ccCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCC--CeEEEcCcccCcEEEEEecCCCCCHHHHHHHHHHHHHH
Q psy9574 50 VIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPD--SQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIEL 127 (783)
Q Consensus 50 ~i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~--~~~~~~~s~~~g~y~d~~~~~~~t~e~l~~Ie~~m~~i 127 (783)
++..+..|+..-..+.....+.+||++|||++|++++||. +++..++...+++||||+.+.++|++ +.+||++||++
T Consensus 76 ~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~vn~~ 154 (216)
T 2e1b_A 76 KFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFNKY 154 (216)
T ss_dssp GCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHHHH
T ss_pred CcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHHHHH
Confidence 4556667777665667788899999999999999999987 47776666689999999987789986 99999999999
Q ss_pred HhcCCCeEEEEcCHHHHHHHhhhcchHHHHHhhccCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 128 SQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 128 I~~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
|++|+||+..++++ ||+|+||+| .++|+||||+|||+|+.|+|++.++
T Consensus 155 I~~~~pv~~~~~~~---------------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~ 203 (216)
T 2e1b_A 155 VDEGGEVKIWWEGD---------------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSS 203 (216)
T ss_dssp HHHCCBEEEEESSS---------------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEEE
T ss_pred HhcCCCEEEEEcCC---------------------------EEEEEECCEEEECCCCCCcccHhhCceEEEEEEeE
Confidence 99999999998874 899999998 8999999999999999999999764
No 50
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.79 E-value=9e-19 Score=202.52 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=120.1
Q ss_pred cCCCceEEEeecCChhhHHHHHHHHHHHHHHHHHHHCCCCeEEEcCcc-cCcEEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy9574 51 IDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVI-ENGFYYDFLYKRSFTKEDLILIEKKMIELSQ 129 (783)
Q Consensus 51 i~~~~~i~~v~~~s~~g~~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~~Ie~~m~~iI~ 129 (783)
+..+..|+..--....-..+.+||++|||++|++++|+......|+.+ .+++|+||+...++|++++.+||++||++|.
T Consensus 591 l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~ 670 (752)
T 2zze_A 591 FXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVM 670 (752)
T ss_dssp CCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred cCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 344555655544445556789999999999999999976666777776 6889999998888999999999999999999
Q ss_pred cCCCeEEEEcCHHHHHHHhhhcchHHHHHhhc-cCCCCCeEEEEEECCE-EEeccccccCCCCCcceEEEEeecC
Q psy9574 130 KNELFLKKNITRDKAIAYFDSVNEQFKKKIIN-LIPNNQEISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202 (783)
Q Consensus 130 ~~~pi~~~~~~~eeA~~~f~~~~~~~k~~Ll~-~~~~~~~v~iy~~~~~-~d~c~Gp~v~~Tg~i~~f~l~~~~~ 202 (783)
+|+||+..+++++||.+++.. .++. ..+.++.||+|++|+| .++|+||||+|||+||.|+|++.++
T Consensus 671 ~nlpV~~~~~s~eEA~~~~~~-------~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIls~s~ 738 (752)
T 2zze_A 671 EDRXVTWEWLPRTTAEQXYGF-------RLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRTER 738 (752)
T ss_dssp HTCBEEEEEEEHHHHHHHHCG-------GGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred hCCccceeecCHHHHhhcchh-------hhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEEEEEE
Confidence 999999999999999997753 2331 1122358999999998 8999999999999999999999754
No 51
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.70 E-value=2.1e-17 Score=150.25 Aligned_cols=96 Identities=13% Similarity=0.181 Sum_probs=89.4
Q ss_pred CCCceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECC--CccHHHHHHHhhcCCCCEEEEEcccccccCceeEEEeeec
Q psy9574 536 LAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR--NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIID 613 (783)
Q Consensus 536 lap~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~--~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~~~~~ 613 (783)
-.|.||.|+|+++++.+||.+|++.|+++|+||++|.+ +++||+||++|...|+||++|||++|+++|+|+||.
T Consensus 6 ~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVsVR~---- 81 (130)
T 1v95_A 6 SGPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNI---- 81 (130)
T ss_dssp CCCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHHHHHHTEEEEEE----
T ss_pred CCCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEechHHhcCeeEEEe----
Confidence 46899999999999999999999999999999999997 899999999999999999999999999999999998
Q ss_pred CCCcccccccccceEEEecccC--cccccCCHHHHHHHHHHhh
Q psy9574 614 RPKHRINREIIAPELRLSGIKN--EPLGIVTLEKAFYLAEKEN 654 (783)
Q Consensus 614 ~~~~~~n~~I~~~~v~li~~~g--~~~~~~~~~~a~~~~~~~~ 654 (783)
..+ ..++.|++++|+..+....
T Consensus 82 -------------------r~~~~~e~~~m~lde~i~~l~~~~ 105 (130)
T 1v95_A 82 -------------------MFGTPQEHRNMPQADAMVLVARNY 105 (130)
T ss_dssp -------------------CSSSCCEEEEEEHHHHHHHHHHHH
T ss_pred -------------------cCCCCCccCccCHHHHHHHHHHHH
Confidence 545 7789999999999987443
No 52
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.67 E-value=3.6e-16 Score=164.86 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe-eeCCceEEEcCCCcHHHHHHHhcccccCCC
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRD 349 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 349 (783)
..++++++.+++.+..+||++|.||.|++.++|..+|+++. .+||.+ ...+++++|||++||++..+++....+ ++
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~-~~ 147 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERL-WD 147 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTT-SC
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeecccccchhhhhcChHHHHHHHHHHHhC-CC
Confidence 35689999999999999999999999999999999998762 245532 112256899999999999888776555 78
Q ss_pred CCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEEE
Q psy9574 350 LPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIK 418 (783)
Q Consensus 350 LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i~ 418 (783)
+|+|+|++|+|||+|.+ ..+ |+|||+|.+++++|.+++.. +.++..++..+++.||++.+.+.
T Consensus 148 ~PlrlfeiG~vFR~E~~--~~~--r~~EF~qle~~i~g~~~~~~--f~elkg~le~ll~~LGl~~~~~~ 210 (288)
T 3dsq_A 148 KPIRIFEIGTCYRKESQ--GAQ--HLNEFTMLNLTELGTPLEER--HQRLEDMARWVLEAAGIREFELV 210 (288)
T ss_dssp SCEEEEEEEEEECSCCS--SSC--CCSEEEEEEEEEETCCGGGH--HHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CCEEEEEEeeEEecCCC--CCC--cCccEEEEEEEEEcCCchhh--HHHHHHHHHHHHHHcCCCCcEEe
Confidence 99999999999999984 334 89999999999999876544 47789999999999999645554
No 53
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.47 E-value=3.8e-15 Score=128.66 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=72.5
Q ss_pred CeEEEEcCCeEEEecC-CCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChhhHHHHHHHHH
Q psy9574 1 MISIQISNELKLQFSK-PITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTA 76 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~-g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~~y~hS~~ 76 (783)
||+|++|||+.++++. |+|+.|+|+.++....+.+|+|+|||+++||++++..||.|+|+++++++|+++||||++
T Consensus 11 ~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg~~i~rHS~~ 87 (88)
T 1wwt_A 11 PIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYSGPSS 87 (88)
T ss_dssp EEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCCSCSCCCCSC
T ss_pred CEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHHhhheeccCC
Confidence 4789999999999998 999999999999888899999999999999999999999999999999999999999974
No 54
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.36 E-value=3.7e-12 Score=134.96 Aligned_cols=132 Identities=19% Similarity=0.330 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCccc--CCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWEN--YKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~--~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
++++.+.+++.+...||+||.||.|++.+.|...+.+.. +.++||.+ ++..+|||+.++++...++.+. +....
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~LR~slsp~L~~~l~~n~-~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV---DKNFCLRPMLTPNLYNYLRKLD-RALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE---TTTEEECSCSHHHHHHHHHHHT-TTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee---CCCeeEcccChHHHHHHHHHhh-ccCCC
Confidence 588999999999999999999999999999987665432 44567777 3679999999999998777654 34578
Q ss_pred CceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCeeEEE
Q psy9574 351 PLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKI 417 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~~~~i 417 (783)
|+|+|++|+|||+|. ...+ |.+||+|.++++++.... +.++..++..+++.||++ +.+
T Consensus 155 p~rlfeiG~vFR~E~--~~~~--~~~Ef~ql~~~~~g~~~~----f~elkg~le~ll~~lGl~-~~~ 212 (290)
T 3qtc_A 155 PIKIFEIGPCYRKES--DGKE--HLEEFTMLVFWQMGSGCT----RENLESIITDFLNHLGID-FKI 212 (290)
T ss_dssp SEEEEEEEEEECCCS--CSSS--CCSEEEEEEEEEESTTCC----HHHHHHHHHHHHHHHTCC-CEE
T ss_pred CeEEEEEcCEEecCC--CCCc--CcchheEEEEEEEcCChH----HHHHHHHHHHHHHHcCCC-cEE
Confidence 999999999999996 4455 899999999999997632 356688889999999985 444
No 55
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.01 E-value=1.5e-09 Score=114.71 Aligned_cols=110 Identities=15% Similarity=0.000 Sum_probs=83.1
Q ss_pred cChhHHHHHHHHHHHHHHHHcCCeEeecCcccch-HHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 267 PKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL-SLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 267 P~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~-~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
..-.+++..|.+.+++.|.++||.+|.||.|++. +++..+..-+. .++|.++..++.++|+...+...-.+. .
T Consensus 12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~~~~~~~~L~~Spe~~~~~l~----~ 85 (294)
T 1nnh_A 12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVEIYGVKMRLTHSMILHKQLAI----A 85 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEEETTEEEEECSCSHHHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEEcCCCCEEeccChHHHHHHHh----h
Confidence 3457889999999999999999999999999999 77765412122 557877666778999854433222221 1
Q ss_pred cCCCCCceEEEecceeecCCCCCCC--Ccccce-eEEEeceeEecCc
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLH--GMMRTR-SFIQDDGHIFCTK 389 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~--GL~R~R-eF~q~d~~~f~~~ 389 (783)
+ -|.|+|++|+|||+|. ||. | |-+ ||+|.|++..+.+
T Consensus 86 ~---g~~rvf~ig~~FR~E~--pq~~~~--RH~~EFtqle~e~~~~~ 125 (294)
T 1nnh_A 86 M---GLKKIFVLSPNIRLES--RQKDDG--RHAYEFTQLDFEVERAK 125 (294)
T ss_dssp T---TCCEEEEEEEEECCCC--GGGCSS--SCCSEEEEEEEEEETCC
T ss_pred c---CccceEEEEccEeCCC--CCCCCC--ccccceeEEEEEecCCC
Confidence 1 2789999999999998 553 6 888 9999999988765
No 56
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=98.96 E-value=1e-09 Score=90.90 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=60.7
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChh
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNI 66 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~ 66 (783)
|+|++|||+.+++++|+|+.|+++.++....+.+++|+|||++++|++++..++.|+|+++.+.+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 78999999999999999999999999877778899999999999999999999999999988754
No 57
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.74 E-value=5e-08 Score=108.15 Aligned_cols=101 Identities=19% Similarity=0.047 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|.+.+++.|..+||.+|.||.|+.. .+ +-..+||.++..++.++|+-..+...-+ +...
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----~~----e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g----- 198 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIAS----AT----EGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGV----- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CS----STTCCCCEEEETTEEEEECSCCHHHHHH-HHHH-----
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEee----CC----CCCceeEEEecCCceEEecCCcHHHHHH-HHhC-----
Confidence 46788999999999999999999999999876 11 1235789888888999998433333233 2221
Q ss_pred CCCceEEEecceeecCCCCCCCCcccce-eEEEeceeEecCc
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTR-SFIQDDGHIFCTK 389 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~R-eF~q~d~~~f~~~ 389 (783)
+-|+|++|+|||+|. ++.+ |-+ ||+|.|++..+.+
T Consensus 199 --~~rvf~ig~~FR~E~--~~~~--RH~pEFtqle~e~~~~~ 234 (429)
T 1wyd_A 199 --VERVFEVAPAWRAEE--SDTP--FHLAEFISMDVEMAFAD 234 (429)
T ss_dssp --HSEEEEEEEEECCCC--CCSS--SCCSEEEEEEEEEETCC
T ss_pred --cCceEEEcccccccC--Cccc--cccceeeEeeeeecCCC
Confidence 579999999999998 5666 888 9999999977765
No 58
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.74 E-value=4.4e-08 Score=108.82 Aligned_cols=102 Identities=12% Similarity=0.031 Sum_probs=78.1
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.-.+++..|.+.+++.|.++||.+|.||.|+.. .++ -..+||.++..++.++|| .+...+..... +
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~-----~~e---~~~~~f~~~~~~~~~~Lr-~Spel~~~~~~----~- 198 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG-----AVE---GGATLFKLKYFDKYAYLS-QSAQLYLEAAI----F- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC-----CSS---CGGGCCEEEETTEEEEEC-SCSHHHHHHHH----H-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee-----cCC---CCceeEEEeecCCcEEec-cChHHHHHHHh----c-
Confidence 356789999999999999999999999999865 111 135788888888999999 22222221111 1
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccce-eEEEeceeEecCc
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTR-SFIQDDGHIFCTK 389 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~R-eF~q~d~~~f~~~ 389 (783)
-|.|+|++|+|||+|. ++.+ |-+ ||+|.|++..+.+
T Consensus 199 --g~~rvf~ig~~FR~E~--~~~~--RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 199 --GLEKVWSLTPSFRAEK--SRTR--RHLTEFWHLELEAAWMD 235 (434)
T ss_dssp --HHSEEEEEEEEECCCC--CCCS--SCCSEEEEEEEEEETCC
T ss_pred --CccceEEEecceecCC--CCCc--ccccEEEEeeEEEcCCC
Confidence 2679999999999998 5666 888 9999999977765
No 59
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.70 E-value=2.5e-08 Score=82.84 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=59.1
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecCChh
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNI 66 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~ 66 (783)
|.|..|+|+.+++++|+|+.|+|..+.+...+.+++|+|||++++|++++.+++.|++++.++-+
T Consensus 8 i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp EEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC---
T ss_pred EEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCccc
Confidence 57889999999999999999999999988888999999999999999999999999999977654
No 60
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.69 E-value=9.9e-08 Score=107.46 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.-.+++..|.+.+++.|..+||.||.||+|+..+ +|. .-++|.++..|+.++|+-..+-..-.+..
T Consensus 176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~~----ga~~f~~~~~~~~~~L~~Spql~~k~l~~------ 241 (487)
T 1eov_A 176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEG----GSSVFEVTYFKGKAYLAQSPQFNKQQLIV------ 241 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSS----SSCCCEEEETTEEEEECSCTHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CCC----CcccceeccCCccEEcccChHHHHHHHHh------
Confidence 3567899999999999999999999999998864 221 34689888888999999332222211111
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccce-eEEEeceeE-ecCc-hhHHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTR-SFIQDDGHI-FCTK-SQIKNEIVVFNE 401 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~R-eF~q~d~~~-f~~~-~~~~~e~~e~~~ 401 (783)
.-+-|+||+|+|||+|. ++.+ |-+ ||+|.|++. |+.+ ++..+...+++.
T Consensus 242 -~g~~rvy~ig~~FR~E~--~~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~ 293 (487)
T 1eov_A 242 -ADFERVYEIGPVFRAEN--SNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293 (487)
T ss_dssp -TTCCEEEEEEEEECCCC--CCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred -cCCCceEEEeccEecCC--CCCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12469999999999998 5667 888 999999995 8864 555444444443
No 61
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.59 E-value=7.3e-08 Score=106.58 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|.+.+++.|.++||.+|.||.|+... +| -..+||.++..++.++|+-..+.. ..++..
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~----~e----~~~~~f~~~~~g~~~~L~~Spel~-~~~l~~------ 188 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG----AE----GGSGLFGVDYFEKRAYLAQSPQLY-KQIMVG------ 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHH-HHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC----CC----CCceeEEEeeCCCcEEeeeCHHHH-HHHHhh------
Confidence 467889999999999999999999999998762 11 124678887677889998322222 222221
Q ss_pred CCCceEEEecceeecCCCCCCCCcccce-eEEEeceeEecC-c-hhHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTR-SFIQDDGHIFCT-K-SQIKNEIVVFN 400 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~R-eF~q~d~~~f~~-~-~~~~~e~~e~~ 400 (783)
. +-|+|++|+|||+|. ++.| |-+ ||+|.|++..+. + ++..+...+++
T Consensus 189 g-~~rvf~ig~~FR~E~--~~~~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll 238 (422)
T 1n9w_A 189 V-FERVYEVAPVWRMEE--HHTS--RHLNEYLSLDVEMGFIADEEDLMRLEEALL 238 (422)
T ss_dssp H-HSEEEEEEEC-----------------CCEEEEEEEESCSSHHHHHHHHHHHH
T ss_pred C-CCceeEEeCceECCC--CCCC--cccceeEEeeeeeeCCCCHHHHHHHHHHHH
Confidence 1 359999999999998 5667 888 999999997776 3 33334333333
No 62
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.51 E-value=5.9e-07 Score=96.60 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=82.3
Q ss_pred eccC----hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeC------CceEEEcCCCcH
Q psy9574 265 WHPK----GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSE------NRFYALKPMNCP 334 (783)
Q Consensus 265 ~lP~----g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~------~~~~~LrP~~~~ 334 (783)
|.|. -.+++..|.+.+|+.|...||.||.||+|..... .| -.-..|.++-. +..++|+-..+-
T Consensus 27 ~~~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---~~----a~~~~F~~~~~~~~~~~~~~~yL~~Spql 99 (345)
T 3a5y_A 27 WQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---TD----IHLVPFETRFVGPGHSQGMNLWLMTSPEY 99 (345)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---CC----TTCCCCEEEECCSTTSCCEEEEECSCSHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC---CC----CccceEEEEecCcccccCCCEeecCCHHH
Confidence 5554 4578899999999999999999999999986531 11 12345666432 267888865544
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHHH
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNEL 402 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~~ 402 (783)
..-+++.... =|+||+|+|||+|.++ .. +..||+|.|+| .|..-++..+..++++..
T Consensus 100 ~~k~l~~~g~-------~rvyqIg~~FR~E~~~--~r--H~pEFt~lE~e~af~d~~d~m~~~E~li~~ 157 (345)
T 3a5y_A 100 HMKRLLVAGC-------GPVFQLCRSFRNEEMG--RY--HNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 157 (345)
T ss_dssp HHHHHHHTTC-------CSEEEEEEEECCCCCB--TT--BCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-------CcEEEEEcceeCCCCc--cc--ccchhheeeeeeeCCCHHHHHHHHHHHHHH
Confidence 4443444332 2899999999999963 33 89999999999 444444555544444443
No 63
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.47 E-value=7.4e-07 Score=100.34 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|.+.+++.|..+||.||.||+|.+. .+|. ..++|.+ +..+..++|+-..+...-+++. +
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~----~~Ga----~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v----~ 240 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAV----AGGA----AARPFITHHNALDMTLYMRIAIELHLKRLIV----G 240 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS----SSCCCEEEETTTTEEEEECSCSHHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEec----CCCC----cccceEecccCCCceeEEecCHHHHHHHHhh----c
Confidence 46789999999999999999999999999865 2232 2367776 3467899999332211111111 1
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCc-hhHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK-SQIKNEIVVFN 400 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~e~~ 400 (783)
-.-|+|++|+|||+|.+ ... |..||+|.|+|.-..+ ++..+...+++
T Consensus 241 ---G~~rVyeig~~FR~E~~--~~r--H~pEFT~lE~e~af~d~~dlm~l~E~ll 288 (493)
T 3a74_A 241 ---GLEKVYEIGRVFRNEGI--STR--HNPEFTMLELYEAYADFRDIMKLTENLI 288 (493)
T ss_dssp ---TCCEEEEEEEEECCCCC--BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---ccCceEEECccccCCCC--Ccc--cCCceeEEEEEecCCCHHHHHHHHHHHH
Confidence 24699999999999985 344 9999999999955544 44444444444
No 64
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.32 E-value=2.4e-06 Score=96.34 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++.+|.+.+|+.|...||.||.||+|.+. ..|. .-.+|.+ +.-+..++|+-..+...-+++...
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~----~~Ga----~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G--- 250 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA----SARPFITHHNALDLDMYLRIAPELYLKRLVVGG--- 250 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS----CCSS----CCCCCEEEETTTTEEEEECSCSHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec----CCCC----cccceEeccCCCCceEEeccCHHHHHHHHhhcC---
Confidence 45788999999999999999999999999854 2221 2356666 345788999943332222222211
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecC-chhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT-KSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~-~~~~~~e~~e~~~ 401 (783)
.-|+|++|+|||+|.++ .. +..||+|.|+|.-.. .++..+...+++.
T Consensus 251 ----~~rVyeIg~~FR~E~~~--~r--H~pEFt~lE~e~af~d~~dlm~l~E~li~ 298 (504)
T 1e1o_A 251 ----FERVFEINRNFRNEGIS--VR--HNPEFTMMELYMAYADYHDLIELTESLFR 298 (504)
T ss_dssp ----CCEEEEEEEEECCCCCC--C---CCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ----CCcEEEEcccccCCCCC--cc--ccCceeeeeeeecCCCHHHHHHHHHHHHH
Confidence 24899999999999863 34 999999999995444 3445444444443
No 65
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.22 E-value=7.9e-06 Score=90.62 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|.+.+++.|...||.||.||+|..... -| +-++|.++.-+..++|+...+-..-++.+..
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---eg-----~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g----- 202 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---EG-----GTELFPMKYFEEDAFLAQSPQLYKQIMMASG----- 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---SC-----SSSCCEEEETTEEEEECSCSHHHHHHGGGTT-----
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---CC-----CccceeEeeCCccEEEecChHHHHHHHHhcC-----
Confidence 3678899999999999999999999999987631 12 2346777666788999865444333222221
Q ss_pred CCCceEEEecceeecCCCCCCCCcccc-eeEEEeceeE-ecC-chhHHHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRT-RSFIQDDGHI-FCT-KSQIKNEIVVFNEL 402 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~-ReF~q~d~~~-f~~-~~~~~~e~~e~~~~ 402 (783)
.-|+|++|+|||+|.+. .+ |- .||+|.|+|. |.. -++..+..++++..
T Consensus 203 --~~rvf~i~~~FR~E~~~--t~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~ 253 (438)
T 3nem_A 203 --LDRVYEIAPIFRAEEHN--TT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVAH 253 (438)
T ss_dssp --CCEEEEEEEEECCCSSC--CT--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred --CCceEEEcceEECCCCC--Cc--ccccceeeeeeeeccCccHHHHHHHHHHHHHH
Confidence 24899999999999853 22 44 4999999994 555 45555555555543
No 66
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.22 E-value=5.8e-06 Score=91.88 Aligned_cols=115 Identities=15% Similarity=0.095 Sum_probs=80.1
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 268 KGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 268 ~g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
.-.+++.+|.+.+|+.|...||.||.||+|..... .|. .++|.++.-|..++|+-..+-..-.+.. .
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~-----~~~F~~~~~g~~~~L~~SpqLylq~l~~----g- 196 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGG-----STLFNLDYFGEQSFLTQSSQLYLETCIP----T- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCT-----TSCCEEEETTEEEEECSCSHHHHHHHHH----H-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCc-----hhceeeccCCcccccCCChHHHHHHhhh----c-
Confidence 35688999999999999999999999999976542 232 2457776678889998543332222211 1
Q ss_pred CCCCceEEEecceeecCCCCCCCCcccce-eEEEecee-EecCchhHHHHHHHHHHH
Q psy9574 348 RDLPLRFGEFGQCHRNESSGSLHGMMRTR-SFIQDDGH-IFCTKSQIKNEIVVFNEL 402 (783)
Q Consensus 348 ~~LPlr~~~~g~~fR~E~~g~~~GL~R~R-eF~q~d~~-~f~~~~~~~~e~~e~~~~ 402 (783)
-=|+||+|+|||+|.+ ..+ |-. ||+|.|+| .|..-++..+...+++..
T Consensus 197 ---~~rvfeIg~~FR~E~~--~t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 197 ---LGDVFCIAQSYRAEKS--RTR--RHLAEYAHVEAECPFITLDDLMEKIEELVCD 246 (435)
T ss_dssp ---HCSEEEEEEEECCCSS--CCT--TCCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred ---cCceEEEecceecCCC--Ccc--ccccceeEEEEEEecCCHHHHHHHHHHHHHH
Confidence 1389999999999984 333 556 99999999 555445555555555433
No 67
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.07 E-value=2.2e-05 Score=87.64 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeec-CcccchH-HHhhhC-CcccCCCCc---eEeee----------------------
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKT-PQMLDLS-LWKKTG-HWENYKDNM---FTTKS---------------------- 321 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~t-P~l~~~~-l~~~sg-~~~~~~~~m---y~~~~---------------------- 321 (783)
..-.+.+.+.+++.|...||+++.| |.+++.. -|..-. .-++-..+| |.++.
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g 303 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQG 303 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhcc
Confidence 3346788889999999999999886 7665542 222211 011222222 44421
Q ss_pred --------------CCceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEec
Q psy9574 322 --------------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFC 387 (783)
Q Consensus 322 --------------~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~ 387 (783)
.++..+||+..+++..+.+..+....+..|+|+|++|+|||+|.. ... ++.+|+|.+..+.+
T Consensus 304 ~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~--Dat--HlpeFhQlegl~~~ 379 (508)
T 3l4g_A 304 GYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL--DAT--HLAEFHQIEGVVAD 379 (508)
T ss_dssp BTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC--CSS--SCSEEEEEEEEEEE
T ss_pred ccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC--CCC--cCCeEEEEEEEEEC
Confidence 014789999999999998876543224679999999999999973 223 78899999998765
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCCeeEE
Q psy9574 388 TKSQIKNEIVVFNELVHKVYNEFGFKKIK 416 (783)
Q Consensus 388 ~~~~~~~e~~e~~~~~~~i~~~lGl~~~~ 416 (783)
.+- . +..+..++..+++.||+..++
T Consensus 380 ~~v-~---f~dLKg~Le~~l~~lG~~~~r 404 (508)
T 3l4g_A 380 HGL-T---LGHLMGVLREFFTKLGITQLR 404 (508)
T ss_dssp ESC-C---HHHHHHHHHHHHHTTTCCCCE
T ss_pred CCC-C---HHHHHHHHHHHHHHcCCcceE
Confidence 321 1 244567778889999874333
No 68
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.00 E-value=3e-05 Score=87.80 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++..|.+.+|+.|...||.||.||+|.... +|. .-..|.+. .-+..++|+-..+-..-+++....
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~----gGa----~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~-- 244 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP----GGA----VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGI-- 244 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC----CCc----cccceeeecccCCcceEeeCCHHHHHHHHHhcCc--
Confidence 357889999999999999999999999998542 231 12345442 236789999655544433333322
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.++.+ +.-||+|.|+| .|+.-++..+..++++.
T Consensus 245 -----~rVyeig~~FR~E~~~tr----H~pEFtmlE~e~af~d~~dlm~l~E~li~ 291 (521)
T 3bju_A 245 -----DRVYEIGRQFRNEGIDLT----HNPEFTTCEFYMAYADYHDLMEITEKMVS 291 (521)
T ss_dssp -----CEEEEEEEEECCSCCBTT----BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred -----CceEEEEcceeCCCCCCc----cchhhhhhhhhhhcCCHHHHHHHHHHHHH
Confidence 279999999999987543 78999999999 55554555555555544
No 69
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.98 E-value=3.8e-05 Score=88.32 Aligned_cols=113 Identities=21% Similarity=0.326 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---eCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---SENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
-.+++.+|.+.+|+.|...||.||.||+|....- .|- .+ |.+. ..+.-|+|+-..+...-+++....
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~---eGA-----r~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~- 206 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---EGA-----RD-YLVPSRVHKGKFYALPQSPQLFKQLLMMSGF- 206 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SSS-----CC-CEEECSSSTTCEEECCSCSHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---CCC-----cc-ceecccccCCceEeCccCHHHHHHHHHhcCC-
Confidence 3578899999999999999999999999985421 121 22 4442 234556677332222222222222
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+||+|+|||+|.++.. |--||+|.|+| .|...++..+..++++.
T Consensus 207 ------~rvfqI~~~FR~E~~~t~----r~pEFT~lE~e~af~d~~dvm~~~E~li~ 253 (585)
T 1c0a_A 207 ------DRYYQIVKCFRDEDLRAD----RQPEFTQIDVETSFMTAPQVREVMEALVR 253 (585)
T ss_dssp ------CEEEEEEEEECCCCCBTT----BCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ------CceEEEeceeecCCCCCC----cCcccceeeeeecCCCHHHHHHHHHHHHH
Confidence 289999999999996543 77799999999 66665555555544443
No 70
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.97 E-value=3.3e-05 Score=86.10 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+++..|...+|+.|...||.||.||+|..... .|. .++|.++.-+..++|+-..+-..-.+.. +
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---eGg-----~~~f~~~~~~~~~~L~~SpqL~lq~l~~----g-- 220 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---EGG-----STLFKLQYFNEPAYLTQSSQLYLESVIA----S-- 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETTEEEEECSCCHHHHHTTHH----H--
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---CCc-----cccccccccCCCcccccCHHHHHHHHHh----c--
Confidence 4678899999999999999999999999976542 121 2356666667888998654433322221 1
Q ss_pred CCCceEEEecceeecCCCCCCCCcccc-eeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRT-RSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~-ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
+ =|+|++|+|||+|.+.. . |- -||+|.|+| .|..-++..+..++++.
T Consensus 221 -~-~rVyeig~~FR~E~~~t--~--rH~pEFtmlE~e~af~d~~d~m~~~E~li~ 269 (456)
T 3m4p_A 221 -L-GKSFCMLSSYRAEQSRT--V--RHLAEYLHLEAELPFISFEDLLNHLEDLVC 269 (456)
T ss_dssp -H-SSEEEEEEEECCCSCCC--S--SCCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred -c-CcEEEEEhheecCCCCC--C--cchHHHHHhHHHHhcCCHHHHHHHHHHHHH
Confidence 1 37999999999998521 1 32 499999999 56554555555544444
No 71
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.96 E-value=4.2e-05 Score=87.70 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee---eCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK---SENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~---~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
-.+++.+|.+.+|+.|...||.||.||+|....- .|- .+ |.+. ..+.-|+|+-..+...-+++....
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~---eGA-----r~-F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~- 212 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---EGA-----RD-FLVPYRHEPGLFYALPQSPQLFKQMLMVAGL- 212 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---SSS-----CC-CEEECTTSTTEEEECCSCSHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---CCC-----CC-ccccccccCCceeECccCHHHHHHHHHHhcc-
Confidence 3578899999999999999999999999985421 121 12 4442 234556677432222222222222
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+||+|+|||+|.++.. |--||+|.|+| .|...++..+..++++.
T Consensus 213 ------~rvfqI~~~FR~E~~~~~----r~pEFT~lE~e~af~d~~dvm~~~E~li~ 259 (580)
T 1l0w_A 213 ------DRYFQIARCFRDEDLRAD----RQPDFTQLDLEMSFVEVEDVLELNERLMA 259 (580)
T ss_dssp ------SEEEEEEEEECCCCCCSS----CCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ------CCeEEEeceeeCCCCCCC----cCCCccceeeeecCCCHHHHHHHHHHHHH
Confidence 289999999999996543 66799999999 66655555555544443
No 72
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.95 E-value=4.6e-05 Score=85.98 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+++.+|...+|+.|...||.||.||+|.... .|. ....|.+. .-+..++|+-..+-..-+++....
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~----gGA----~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~-- 272 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP----GGA----AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGF-- 272 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----CSS----SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC----CCC----cccccccccccCCcceecccCHHHHHHHHHhcCC--
Confidence 467889999999999999999999999998541 221 12344432 236778898554444333333322
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHHHHHHH
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEIVVFNE 401 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.++.+ +.-||+|.|+| .|+.-++..+...+++.
T Consensus 273 -----~rVyeIg~~FR~E~~~~r----H~pEFtmlE~e~af~d~~dlm~l~E~li~ 319 (529)
T 4ex5_A 273 -----ERVFEINRNFRNEGVSPR----HNPEFTMMEFYAAYTDYRWLMDFTERLIR 319 (529)
T ss_dssp -----SEEEEEEEEECCSCCBTT----BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred -----CcEEEeehheecCCCCCC----cccHhHhhhhhhhcCCHHHHHHHHHHHHH
Confidence 389999999999986533 78999999999 56554555555555544
No 73
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.85 E-value=8.5e-05 Score=85.09 Aligned_cols=108 Identities=21% Similarity=0.338 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHHH-HcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 269 GYIILQEIKKYMRKIYK-YNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 269 g~~l~~~l~~~~~~~~~-~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
-.+++..|...+|+.|. ..||.||.||+|.... -.|. . -|.+. ..+..++|+-..+...-.++....
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st---~~GA-----~-~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~- 216 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT---PGGA-----K-EFLVPSREPGKFYSLPQSPQQFKQLLMVGGL- 216 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC---CSSS-----C-CCEEECSSTTCEEECCSSTTHHHHHHHHTSC-
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC---CCCC-----c-CceeccccCCcccccccCHHHHHHHHHhccc-
Confidence 36788999999999996 7999999999997531 1222 1 24442 246778887544433333333222
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEecee-EecCchhHHHHH
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH-IFCTKSQIKNEI 396 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~-~f~~~~~~~~e~ 396 (783)
=|+||+|+|||+|.++. - |..||+|.|+| .|+..++..+..
T Consensus 217 ------~rvfqi~~~FR~E~~~t--~--r~pEFt~lE~e~af~d~~d~m~~~ 258 (617)
T 4ah6_A 217 ------DRYFQVARCYRDEGSRP--D--RQPEFTQIDIEMSFVDQTGIQSLI 258 (617)
T ss_dssp ------SEEEEEEEEECCCSSCS--S--SCSEEEEEEEEEESCCHHHHHHHH
T ss_pred ------CcEEEEEhheecccCCC--C--cCcceecceeeecCCCHHHHHHHH
Confidence 28999999999998643 3 78999999999 565544444433
No 74
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.85 E-value=8.4e-05 Score=83.41 Aligned_cols=85 Identities=13% Similarity=0.243 Sum_probs=65.6
Q ss_pred eEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCC-CCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGS-LHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 325 ~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~-~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
..+|||+..+++....+.+. +.+..|+|+|++|+|||+|. + ..+ +.+||+|.++.+.+.+.. +.++..++
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d~--~~d~t--h~~Ef~qLagli~G~~vd----f~dLKgil 250 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRREQ--GEDAT--RLYTYFSASCVLVDEELS----VDDGKAVA 250 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCCT--TCSSS--CCSEEEEEEEEEECSSCC----HHHHHHHH
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecCc--ccccc--ccceeeEEEEEEECCCCC----HHHHHHHH
Confidence 57999999999887777554 34578999999999999875 3 334 679999999999986422 24557778
Q ss_pred HHHHhhcCCeeEEEE
Q psy9574 404 HKVYNEFGFKKIKIK 418 (783)
Q Consensus 404 ~~i~~~lGl~~~~i~ 418 (783)
..++..||+..+.+.
T Consensus 251 E~LL~~LGi~~~r~~ 265 (534)
T 2du3_A 251 EALLRQFGFENFRFR 265 (534)
T ss_dssp HHHHGGGTCCEEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 899999998644444
No 75
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.82 E-value=7e-05 Score=84.60 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccccCCC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRD 349 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~ 349 (783)
.+++..|.+.+|+.|...||.||.||+|..... .|. -+.|.++.-+..++|+-..+-..-++++...
T Consensus 244 ~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---egg-----a~~F~v~~~~~~~yL~~Spql~~k~ll~~g~----- 310 (548)
T 3i7f_A 244 FRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---EGG-----SNIFEVKYFDRKAYLAQSPQLYKQMAIMGDF----- 310 (548)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCSCTHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---CCC-----cceeEEecCCCceEeccCHHHHHHHHHhcCc-----
Confidence 578899999999999999999999999987741 122 2344443334557777544433333333222
Q ss_pred CCceEEEecceeecCCCCCCCCccc-ceeEEEecee-EecC-chhHHHHHHHHHH
Q psy9574 350 LPLRFGEFGQCHRNESSGSLHGMMR-TRSFIQDDGH-IFCT-KSQIKNEIVVFNE 401 (783)
Q Consensus 350 LPlr~~~~g~~fR~E~~g~~~GL~R-~ReF~q~d~~-~f~~-~~~~~~e~~e~~~ 401 (783)
=|+|++|+|||+|.+... | .-||+|.|+| .|+. -++..+...+++.
T Consensus 311 --~rVfeI~~~FR~E~~~t~----RHl~EFtmlE~e~af~~d~~d~m~~~E~li~ 359 (548)
T 3i7f_A 311 --RKVFEVGPVFRAENSNTR----RHLTEFEGLDIEMEIVENYHECIDVMEKLFT 359 (548)
T ss_dssp --CEEEEEEEECCCSCCCSS----SCCSCEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred --CcEEEEeeeEecCCCCCC----CcchhhhchhhhhhhhcCHHHHHHHHHHHHH
Confidence 489999999999985211 2 3599999999 5874 4555555444443
No 76
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.67 E-value=0.00044 Score=74.18 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecCcccchH-HHhhhCC-cccCC---CCceEeee--C----------CceEEEcCCCcH
Q psy9574 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLS-LWKKTGH-WENYK---DNMFTTKS--E----------NRFYALKPMNCP 334 (783)
Q Consensus 272 l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~sg~-~~~~~---~~my~~~~--~----------~~~~~LrP~~~~ 334 (783)
-...+.+.+++.|...||+++.+|.+++.. .|..-+- .++.. .+.|.+.. + .+..+||+...|
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 367788889999999999999999997753 2222111 00111 22344431 1 366899999999
Q ss_pred HHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhc-CC
Q psy9574 335 GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEF-GF 412 (783)
Q Consensus 335 ~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~l-Gl 412 (783)
...+.+.. ...|+|+|++|+|||+|..+.. ...||+|.++.+.+..-. +..+...+..+++.+ |.
T Consensus 182 ~llr~l~~-----~~~piriFEiGrVFR~d~~d~t----H~pEF~qlegl~~g~~v~----f~dLKg~le~ll~~lfG~ 247 (350)
T 1b7y_A 182 MQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT----HEAVFHQLEGLVVGEGIA----MAHLKGAIYELAQALFGP 247 (350)
T ss_dssp HHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS----CCSEEEEEEEEEEETTCC----HHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC----CCChhHEEEEEEECCCCC----HHHHHHHHHHHHHhhcCC
Confidence 99887765 2569999999999998763222 347999999999886321 234456667777776 75
No 77
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.55 E-value=0.0004 Score=73.09 Aligned_cols=128 Identities=11% Similarity=0.137 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecCcccchHH-HhhhCC-cccCC---CCceEeeeCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSL-WKKTGH-WENYK---DNMFTTKSENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 272 l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~-~~~~~---~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
-.+.+.+.+++.+...||+|+.+|.+.+... |..-+. .++-. .+.+.+. +..+||+...|+..+.++.+.
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~---e~~vLRtsl~p~ll~~l~~N~-- 128 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT---DEILMRTHTSPVQARTMEKRN-- 128 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS---SSEEECSSSHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc---CcceeeccCHHHHHHHHHhcC--
Confidence 4677888999999999999998888876532 222111 01100 1123342 567999999999998888664
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhc-CCe
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEF-GFK 413 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~l-Gl~ 413 (783)
...|+|+|++|+|||++..+.. ...||+|.++.+.+.+-. +..+...+..+++.+ |++
T Consensus 129 -~~~~~riFEiG~Vfr~d~~d~~----h~~Ef~~Le~~~~g~~~d----f~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 129 -GQGPVKIICPGKVYRRDSDDAT----HSHQFTQIEGLVVDKNIK----MSDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp -TCSCEEEEEEEEEECCCCCBTT----BCSEEEEEEEEEEESSCC----HHHHHHHHHHHHHHHHCTT
T ss_pred -CCCCccEEEEcCEEecCCCCCC----CCChhhEEEEEEECCCCC----HHHHHHHHHHHHHHHhCCC
Confidence 4679999999999998652222 336999999998885321 233455666677776 763
No 78
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.0013 Score=73.74 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=60.7
Q ss_pred ceEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 324 RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 324 ~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
+.-+||++..|++....+.+. +....|+|+|++|+|||.+.. .... ..+||+|.++-+.+.+- .+..+...+
T Consensus 191 e~svLRTsLlPGLL~~vr~N~-~r~~~pvrlFEiGrVFr~D~~-~d~t--h~~ef~qLaglv~G~~v----dF~DLKG~L 262 (549)
T 2du7_A 191 TTLTLRSHMTSGWFITLSSLI-KKRKLPLKLFSIDRCFRREQR-EDRS--HLMSYHSASCVVVGEDV----SVDDGKVVA 262 (549)
T ss_dssp EEEECCSTTHHHHHHHHHTTT-TTSCSSEEEEEEEEECCCCSS-CSSS--CCSCEEEEEEEEECTTC----CHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHH-hcCCCCeEEEEEeeEEecCCc-ccCc--CCCcceEEEEEEECCCC----CHHHHHHHH
Confidence 457999999998877776554 234789999999999997651 0111 55899999999998632 134557778
Q ss_pred HHHHhhcCCe
Q psy9574 404 HKVYNEFGFK 413 (783)
Q Consensus 404 ~~i~~~lGl~ 413 (783)
..+++.||+.
T Consensus 263 e~ll~~LGi~ 272 (549)
T 2du7_A 263 EGLLAQFGFT 272 (549)
T ss_dssp HHHHGGGTCC
T ss_pred HHHHHHcCCC
Confidence 8888888874
No 79
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.11 E-value=0.0042 Score=65.77 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeecCcccchH-HHhhh----CCcccCCCCceEeeeCCceEEEcCCCcHHHHHHHhcccc
Q psy9574 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLS-LWKKT----GHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFH 345 (783)
Q Consensus 271 ~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~s----g~~~~~~~~my~~~~~~~~~~LrP~~~~~~~~~~~~~~~ 345 (783)
.-.+.+.+.+++.|...||+++.+|.++... .|..- .|-..-..+.|.+. +..+||+...|...+.+..
T Consensus 107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~---e~~vLRThtsp~~lr~l~~--- 180 (327)
T 3pco_A 107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD---TTRLLRTQTSGVQIRTMKA--- 180 (327)
T ss_dssp CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS---SSCEECSCTHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC---CCceecccCCHHHHHHHHh---
Confidence 4467788889999999999999999886432 22110 11000001123332 4579999999999887754
Q ss_pred cCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhc
Q psy9574 346 SYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEF 410 (783)
Q Consensus 346 s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~l 410 (783)
...|+|++++|+|||.+. ... .+.+|+|.+..+.+.+-. +..+-.....+++.|
T Consensus 181 --~~~pirifeiGrVyR~d~-d~t----h~p~fhqlegl~v~~~v~----f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 181 --QQPPIRIIAPGRVYRNDY-DQT----HTPMFHQMEGLIVDTNIS----FTNLKGTLHDFLRNF 234 (327)
T ss_dssp --CCSSCCBCCEECCBCSCC-BTT----BCSBCCEEEEEEEETTCC----HHHHHHHHHHHHHHH
T ss_pred --CCCCeeEEeeccEEecCC-Ccc----cCCcccEEEEEEECCCCC----HHHHHHHHHHHHHHH
Confidence 357999999999999984 222 456799988666543211 233344555555555
No 80
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.03 E-value=0.0027 Score=71.81 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred eEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 325 ~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
.-+||+...|++....+.+. +....|+|+|++|+|||.+.. .+. ...||+|.++-+.+.+-. +..+...+
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vd----F~DLKGvL 269 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 56899999998876666543 234789999999999997652 122 348999999998886321 24456777
Q ss_pred HHHHhhcCCeeEEEE
Q psy9574 404 HKVYNEFGFKKIKIK 418 (783)
Q Consensus 404 ~~i~~~lGl~~~~i~ 418 (783)
..+++.||+..+.+.
T Consensus 270 E~LL~~LGi~~vrfr 284 (648)
T 2odr_B 270 EGLLSQFGFTNFKFI 284 (648)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888888887434444
No 81
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.02 E-value=0.0031 Score=71.71 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred eEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 325 ~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
.-+||+...|++....+.+. +....|+|+|++|+|||.+.. .+. ...||+|.++-+.+.+-. +..+...+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~EfhqLeGlv~G~~vD----F~DLKGvL 269 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEEeeEEccCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 46899999998876666543 234789999999999997652 122 348999999998886321 34456777
Q ss_pred HHHHhhcCCeeEEEE
Q psy9574 404 HKVYNEFGFKKIKIK 418 (783)
Q Consensus 404 ~~i~~~lGl~~~~i~ 418 (783)
..+++.||+..+.+.
T Consensus 270 E~LL~~LGi~~vrfr 284 (701)
T 2odr_C 270 EGLLSQFGFTNFKFI 284 (701)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888888887434444
No 82
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.02 E-value=0.0028 Score=71.76 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred eEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 325 ~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
.-+||+...|++....+.+. +....|+|+|++|+|||.+.. .+. ...||+|.++-+.+.+-. +..+...+
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vd----F~DLKGvL 269 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hcCCCCeEEEEEeeEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 56899999998876666543 234789999999999997652 122 348999999998886321 24456777
Q ss_pred HHHHhhcCCeeEEEE
Q psy9574 404 HKVYNEFGFKKIKIK 418 (783)
Q Consensus 404 ~~i~~~lGl~~~~i~ 418 (783)
..+++.||+..+.+.
T Consensus 270 E~LL~~LGi~~vrfr 284 (665)
T 2odr_A 270 EGLLSQFGFTNFKFI 284 (665)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888888887434444
No 83
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.01 E-value=0.0029 Score=71.77 Aligned_cols=85 Identities=15% Similarity=0.249 Sum_probs=61.0
Q ss_pred eEEEcCCCcHHHHHHHhcccccCCCCCceEEEecceeecCCC-CCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHH
Q psy9574 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESS-GSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELV 403 (783)
Q Consensus 325 ~~~LrP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~ 403 (783)
.-+||+...|++....+.+. +....|+|+|++|+|||.+.. .+. ...||+|.++-+.+.+-. +..+...+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~-~R~~~pvRLFEIGrVFR~D~~lDat----h~~Ef~qLeGlv~G~~vD----F~DLKGvL 269 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLM-NKKPLPFKLFSIDRCFRREQKEDKS----HLMTYHSASCAIAGEGVD----INDGKAIA 269 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHT-TTSCSCEEEEEEEEEECCCSCCCSS----CCSEEEEEEEEEECTTCC----HHHHHHHH
T ss_pred cCcccccchhhHHHHHHHHH-hCCCCCeEEEEeccEEecCcccccc----CCCcceEEEEEEECCCCC----HHHHHHHH
Confidence 56899999998876666543 234789999999999997652 122 348999999998886321 34456777
Q ss_pred HHHHhhcCCeeEEEE
Q psy9574 404 HKVYNEFGFKKIKIK 418 (783)
Q Consensus 404 ~~i~~~lGl~~~~i~ 418 (783)
..+++.||+..+.+.
T Consensus 270 E~LL~~LGi~~vrfr 284 (685)
T 2odr_D 270 EGLLSQFGFTNFKFI 284 (685)
T ss_dssp HHHHHTTTCCCEEEE
T ss_pred HHHHHHcCCCeEEEE
Confidence 888888887434444
No 84
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.78 E-value=0.012 Score=68.00 Aligned_cols=131 Identities=13% Similarity=0.160 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCeEeecCcccchHH-HhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhcccccCC
Q psy9574 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSL-WKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHSYR 348 (783)
Q Consensus 272 l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 348 (783)
-.+.+.+.+++.+...||+|+.|+.|.+.+. +..-+.-+. ..+.+.+. .+.+.-+||++.-|++....+.+.. +
T Consensus 392 ~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~--~ 468 (589)
T 3l4g_B 392 PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRK--M 468 (589)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTT--S
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhc--C
Confidence 3567788899999999999999999998873 333221111 02233332 2345568999999999988886643 3
Q ss_pred CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchhHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 349 DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 349 ~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
..|+|+|++|+|||.+.. ... ..+|+.+..+.+.+.... +..+-..+..+++.||++
T Consensus 469 ~~~vrlFEiG~Vf~~d~~-~~~---~~~e~~~la~~~~g~~~~----f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 469 PLPLKLFEISDIVIKDSN-TDV---GAKNYRHLCAVYYNKNPG----FEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp CSCEEEEEEEEEEEECTT-STT---SEEEEEEEEEEEESSSCC----HHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEeeeEEecCCc-ccc---CCccccEEEEEEECCCCC----HHHHHHHHHHHHHHcCCC
Confidence 569999999999998753 211 357898988877765422 334456667888889885
No 85
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=96.66 E-value=0.017 Score=57.55 Aligned_cols=135 Identities=11% Similarity=0.192 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEee--eCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK--SENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
.+++.+.+++.+...||+|+.|-.|.+.+.+..-+..+ .++...+. .+.+.-+||++.-|++....+.+.. .+.-
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~-r~~~ 82 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYP--SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNAN-RKNA 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSC--GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccC--cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhc-CCCC
Confidence 35678889999999999999999999988765433211 12334442 3456679999999999988876652 2344
Q ss_pred CceEEEecceeecCCCC-----CCCCcccceeEEEeceeEecCch-------hHHHHHHHHHHHHHHHHhhcCCe
Q psy9574 351 PLRFGEFGQCHRNESSG-----SLHGMMRTRSFIQDDGHIFCTKS-------QIKNEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g-----~~~GL~R~ReF~q~d~~~f~~~~-------~~~~e~~e~~~~~~~i~~~lGl~ 413 (783)
++|+|++|+||+.+... |.. ..+|..+..+-+-|... .....+..+...+..++..||++
T Consensus 83 ~v~lFEiG~Vf~~~~~~~~~~~~~~---~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 83 DLKFFEFGNCYHFDAEKKNPEKVLA---PYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp CCEEEEEEEEEEECC-------------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred CeeEEEeeeEEecCccccccccccc---ccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 69999999999976521 111 34677777665555321 11223466777888888888885
No 86
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.46 E-value=0.0049 Score=51.99 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=48.3
Q ss_pred CeEEEEcCCeEEEecCC-CCHHHHHHhhcccccCceEEEEECCEEeec----ccccCCCceEEEeec
Q psy9574 1 MISIQISNELKLQFSKP-ITVLDVASHISVNLAKTAIVGKLNGVLVDL----SYVIDHDVNLIIITE 62 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g-~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~~ 62 (783)
+|+|++ +|+.++++.+ +|+.++.+.++. ...-+++.||+++++- ++++.+++.|+++..
T Consensus 20 ~M~I~v-NGe~~el~~~~~Tv~dLL~~L~~--~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 20 RHMLQL-NGKDVKWKKDTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp --CEEE-TTEEECCSSSCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred ceEEEE-CCEEEECCCCCCcHHHHHHHhCC--CCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 467887 8999999998 999999999864 3445678999999987 578999999999874
No 87
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=96.26 E-value=0.04 Score=54.89 Aligned_cols=138 Identities=12% Similarity=0.134 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccCCCC
Q psy9574 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSYRDL 350 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~L 350 (783)
.+++.+.+++.+...||+|+.|-.|.+.+.+..-+..+ .++...+ ..+.+.-+||++.-|++....+.+.. .+.-
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~--~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~-r~~~ 82 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHP--REMAVELMNPLSQELNCMRQTLLFGGLETLSHNLR-RKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSC--GGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHT-TTCS
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccC--cCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHc-CCCC
Confidence 35788899999999999999999999988765432211 1122333 23556779999999999888876652 2233
Q ss_pred CceEEEecceeecCCCCCC--CCcccceeEEEeceeEecCch-hHH------HHHHHHHHHHHHHHhhcCCe
Q psy9574 351 PLRFGEFGQCHRNESSGSL--HGMMRTRSFIQDDGHIFCTKS-QIK------NEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 351 Plr~~~~g~~fR~E~~g~~--~GL~R~ReF~q~d~~~f~~~~-~~~------~e~~e~~~~~~~i~~~lGl~ 413 (783)
++|+|++|+||+.+..... ..+-..+|..+..+-+-|... ..+ ..+..+...+..++..||++
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~ 154 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIE 154 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCC
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 5999999999997642100 001134677777666666421 111 12345566777778888875
No 88
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.14 E-value=0.0095 Score=47.49 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=49.0
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeec----ccccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDL----SYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.++++.|+|+.++.+.+.. ...-++..+|++.++- ++++.+++.|+++..
T Consensus 1 m~i~v-Ng~~~~~~~~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 1 MQILF-NDQAMQCAAGQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CCEEE-SSCEECCCTTCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred CEEEE-CCEEEEcCCCCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 46787 7899999999999999999864 3455689999999986 688999999999874
No 89
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.02 E-value=0.012 Score=47.62 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=48.3
Q ss_pred eEEEEcCCeE----EEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 2 ISIQISNELK----LQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~----~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+. ++++.++|+.++.+.++.. ..-+++.+|+++++.+.++.+++.|+++..
T Consensus 5 m~i~v-Ng~~~~~~~~~~~~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 5 MKFTV-ITDDGKKILESGAPRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEE-EETTEEEEEEESSCCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred EEEEE-eCccCceeEECCCCCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 67777 5555 8899999999999998643 344678899999999999999999999875
No 90
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.83 E-value=0.01 Score=48.37 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=47.6
Q ss_pred eEEEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecc----cccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLS----YVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~----~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.+++ .++|+.++++.++.. ..-||+.+||++++-. +++.+++.|+++.+
T Consensus 1 M~I~v-NG~~~e~-~~~Tl~~LL~~l~~~--~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTI-NGEQREV-QSASVAALMTELDCT--GGHFAVALNYDVVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp CCEEE-TTEEECC-CCSBHHHHHHHTTCC--SSSCEEEESSSEECHHHHTTCBCCTTCEEEEECC
T ss_pred CEEEE-CCEEEEc-CCCcHHHHHHHcCCC--CCcEEEEECCEECChHHcCcccCCCCCEEEEEcc
Confidence 47887 7899999 999999999998643 3456789999998874 68999999999985
No 91
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=95.82 E-value=0.01 Score=49.08 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=48.9
Q ss_pred eEEEEcCCeEEEec--CCCCHHHHHHhhcccccCceEEEEECCEEeecc----cccCCCceEEEeec
Q psy9574 2 ISIQISNELKLQFS--KPITVLDVASHISVNLAKTAIVGKLNGVLVDLS----YVIDHDVNLIIITE 62 (783)
Q Consensus 2 i~i~~~~g~~~~~~--~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~----~~i~~~~~i~~v~~ 62 (783)
|+|++ +|+.++++ .|+|+.+++..++... ..-+|+.+||++++-. +++.+++.|+++.+
T Consensus 1 M~I~v-NGe~~e~~~~~~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 1 MNLTV-NGKPSTVDGAESLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp CEEEE-TTEEEECSSCSCEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred CEEEE-CCEEEEcCCCCCCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 47887 89999999 9999999999986431 3446788999999885 78999999999875
No 92
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.82 E-value=0.035 Score=66.14 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCC-ceEee--eCCceEEEcCCCcHHHHHHHhccccc
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN-MFTTK--SENRFYALKPMNCPGHIQIYNSNFHS 346 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~-my~~~--~~~~~~~LrP~~~~~~~~~~~~~~~s 346 (783)
..-.+.+.+.+++.+...||+|+.|..|...+.+..-+ + ... .+.+. .+.+.-+||++.-|++....+.+. +
T Consensus 492 ~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~-~ 566 (795)
T 2rhq_B 492 LTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATAYNV-A 566 (795)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHh-c
Confidence 33467788899999999999999999998887552221 1 123 34442 234556899999999998888664 3
Q ss_pred CCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCch-hHH------HHHHHHHHHHHHHHhhcCCe
Q psy9574 347 YRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKS-QIK------NEIVVFNELVHKVYNEFGFK 413 (783)
Q Consensus 347 ~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~-~~~------~e~~e~~~~~~~i~~~lGl~ 413 (783)
....|+|+|++|+|||.+.. ..+ . +||+|..+-+.|... ..+ ..+..+...+..++..||++
T Consensus 567 r~~~~vrlFEiG~Vf~~d~~--~~~--~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~ 635 (795)
T 2rhq_B 567 RKNKDVRLYEIGRVFFGNGE--GEL--P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE 635 (795)
T ss_dssp TTCCCEEEEEEEEEEECCCT--TSC--C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCeEEEEEeeEEecCCc--ccC--c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 34679999999999996532 111 3 899998887777541 111 12455667777778777875
No 93
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=95.53 E-value=0.038 Score=43.60 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=46.2
Q ss_pred EEEcCCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecc----cccCCCceEEEeec
Q psy9574 4 IQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLS----YVIDHDVNLIIITE 62 (783)
Q Consensus 4 i~~~~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~----~~i~~~~~i~~v~~ 62 (783)
|++ +|+.+++ .++|+.++.+.+... ..-++..+|++.++.. +++.+++.|+++..
T Consensus 2 i~v-Ng~~~~~-~~~tv~~ll~~l~~~--~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 2 VWL-NGEPRPL-EGKTLKEVLEEMGVE--LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEE-TTEEECC-TTCCHHHHHHHHTBC--GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEE-CCEEEEc-CCCcHHHHHHHcCCC--CCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 555 7899999 999999999998643 4456788999999976 89999999999874
No 94
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.86 E-value=0.057 Score=64.08 Aligned_cols=126 Identities=14% Similarity=0.174 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccC
Q psy9574 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSY 347 (783)
Q Consensus 270 ~~l~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~ 347 (783)
..-.+.+.+.+++.+...||+|+.|-.|...+.+..-+. ..+.+.+ ..+.+.-+||++.-|++....+.+. +.
T Consensus 488 ~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~----~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~-~r 562 (785)
T 1b7y_B 488 VEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRL----DPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENL-DL 562 (785)
T ss_dssp TTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTC----CCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCC----CCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHh-hc
Confidence 334677888999999999999999999988876632211 1222444 2344556899999999998888664 23
Q ss_pred C-CCCceEEEecceeecCCCCCCCCcccceeEEEeceeEecCchh-H-----HHHHHHHHHHHHHHHhhcCC
Q psy9574 348 R-DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ-I-----KNEIVVFNELVHKVYNEFGF 412 (783)
Q Consensus 348 ~-~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~-~-----~~e~~e~~~~~~~i~~~lGl 412 (783)
+ ..|+|+|++|+||| + +||+|..+-+.|.... . ...+..+...+..++..||+
T Consensus 563 ~~~~~vrlFEiG~Vf~-~-----------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi 622 (785)
T 1b7y_B 563 DRPERALLFEVGRVFR-E-----------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGL 622 (785)
T ss_dssp SCCSCEEEEEEEEEES-S-----------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTC
T ss_pred CCCCCeEEEEEeeeec-c-----------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCC
Confidence 3 57999999999999 2 6888888777775311 0 01234556666677777776
No 95
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=94.16 E-value=0.035 Score=45.25 Aligned_cols=58 Identities=7% Similarity=0.096 Sum_probs=46.3
Q ss_pred eEEEEcCCeE---EEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeecC
Q psy9574 2 ISIQISNELK---LQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEK 63 (783)
Q Consensus 2 i~i~~~~g~~---~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~~ 63 (783)
|+|++. |.. .+++.|+|+.|+++.++... ..+ ++.+||+.++.+..++ ++.|+++.+-
T Consensus 3 v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lgl~~-~~V-vV~vNG~~v~~d~~l~-GD~VeIv~~V 63 (74)
T 2l32_A 3 VTVEVV-GEETSEVAVDDDGTYADLVRAVDLSP-HEV-TVLVDGRPVPEDQSVE-VDRVKVLRLI 63 (74)
T ss_dssp EEEECS-SSSEEEEECSTTCSHHHHHHTTCCCS-SCC-CEECCCCCCCTTSSSC-CCCEEECSSC
T ss_pred EEEEEe-CccceeEEcCCCCcHHHHHHHcCCCc-ceE-EEEECCEECCHHHCCC-CCEEEEEEee
Confidence 566764 544 78999999999999987543 334 7899999999999886 8899998753
No 96
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=93.76 E-value=0.52 Score=51.56 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHc--------CCeEeec-CcccchH-HHhhhCC-cccCC---CCceEeeeCCceEEEcCCCcHHHHH
Q psy9574 273 LQEIKKYMRKIYKYN--------GYKEIKT-PQMLDLS-LWKKTGH-WENYK---DNMFTTKSENRFYALKPMNCPGHIQ 338 (783)
Q Consensus 273 ~~~l~~~~~~~~~~~--------G~~ev~t-P~l~~~~-l~~~sg~-~~~~~---~~my~~~~~~~~~~LrP~~~~~~~~ 338 (783)
.+.+.+.+++.|... ||+++.+ |.+++.. .|..-+. -++.. .+.|.++ +..+||..+.+...+
T Consensus 50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~---~~~vLRThts~~~~~ 126 (415)
T 3cmq_A 50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN---RTHMLRAHTSAHQWD 126 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS---SSEEECSSGGGGHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec---CCeEEcCCCcHHHHH
Confidence 345555566666555 8999998 6666443 4433221 11111 2234342 458999988888888
Q ss_pred HHhcccccCCCCCceEEEecceeecCCCCCCCCcccceeEEEeceeE
Q psy9574 339 IYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHI 385 (783)
Q Consensus 339 ~~~~~~~s~~~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~ 385 (783)
.+... .| |++.+|.|||.+.... . .+.+|+|.+.-.
T Consensus 127 ~l~~~------~~-k~~~~G~VyR~D~~da--~--h~n~fhQ~egv~ 162 (415)
T 3cmq_A 127 LLHAG------LD-AFLVVGDVYRRDQIDS--Q--HYPIFHQLEAVR 162 (415)
T ss_dssp HHHTT------CS-EEEEEEEEECCCCCBT--T--BCSEEEEEEEEE
T ss_pred HHHHC------CC-CEEEeeeEEeccchhh--h--hhHHhcCCCcEE
Confidence 87653 36 9999999999986322 2 678899888653
No 97
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=90.22 E-value=0.1 Score=42.74 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=43.8
Q ss_pred CCeEEEecCCCCHHHHHHhhcccccCceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 8 NELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 8 ~g~~~~~~~g~t~~~i~~~~~~~~~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
++..++++.++|+.++.+.+... ...+++.||++.++.++++.++++|+++..
T Consensus 21 n~~~~~~~~~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKEIEWREGMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCSSCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSCC
T ss_pred CCEEEECCCCCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEcc
Confidence 56677888999999999988643 344578899999999999999999998763
No 98
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=90.19 E-value=0.39 Score=40.33 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=47.1
Q ss_pred CeEEEEcC-------CeEEEecCCCCHHHHHHhhccccc-------------CceEEEEECCEEee----cccccCCCce
Q psy9574 1 MISIQISN-------ELKLQFSKPITVLDVASHISVNLA-------------KTAIVGKLNGVLVD----LSYVIDHDVN 56 (783)
Q Consensus 1 ~i~i~~~~-------g~~~~~~~g~t~~~i~~~~~~~~~-------------~~~v~a~vn~~~~~----L~~~i~~~~~ 56 (783)
||+|.+.. .+..+++.|+|+.++...+...++ .+.+++.||++.++ +++++.++++
T Consensus 1 mv~V~~fa~lr~~~g~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~ 80 (90)
T 2g1e_A 1 MVTVRYYATLRPITKKKEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDK 80 (90)
T ss_dssp CEEEEECSTHHHHHTCSEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCE
T ss_pred CEEEEEeHHHHHHcCCCEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCE
Confidence 67777652 346678888999999988765431 13468899999886 7899999999
Q ss_pred EEEeec
Q psy9574 57 LIIITE 62 (783)
Q Consensus 57 i~~v~~ 62 (783)
|+++..
T Consensus 81 V~i~pp 86 (90)
T 2g1e_A 81 IDLFPP 86 (90)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999863
No 99
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.89 E-value=0.37 Score=41.35 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=42.0
Q ss_pred EEEecCCCCHHHHHHhhccccc-------------CceEEEEECCEEeecccccCCCceEEEeec
Q psy9574 11 KLQFSKPITVLDVASHISVNLA-------------KTAIVGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~-------------~~~v~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
..+++.++|+.++...+...++ .+.++..||++.+++++++..+++|.|+..
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEESC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEECC
Confidence 4566789999999988764321 255789999999999999999999999863
No 100
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=88.45 E-value=1.3 Score=37.33 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=46.6
Q ss_pred EEe-cCCCCHHHHHHhhcccccCceEEEEE-------CCEEeecccccCCCceEEEeecCC
Q psy9574 12 LQF-SKPITVLDVASHISVNLAKTAIVGKL-------NGVLVDLSYVIDHDVNLIIITEKD 64 (783)
Q Consensus 12 ~~~-~~g~t~~~i~~~~~~~~~~~~v~a~v-------n~~~~~L~~~i~~~~~i~~v~~~s 64 (783)
..+ ++|+|+.|+|..+.....+....|.| |++-+.|++.+.++.-|+++.-..
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCS
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCCC
Confidence 677 89999999999999988888888876 899999999999888899987543
No 101
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=87.73 E-value=1.3 Score=36.16 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=39.4
Q ss_pred EEEe-cCCCCHHHHHHhhcccc-------cCceEEEEECCEEeecccccCCCceEEEee
Q psy9574 11 KLQF-SKPITVLDVASHISVNL-------AKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 11 ~~~~-~~g~t~~~i~~~~~~~~-------~~~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
..++ ..++|+.++...+...+ ...-++..||++..++++++.++++|.++.
T Consensus 18 ~~~~~~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVAADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEECSCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred eEEEcCCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeC
Confidence 4455 47889999998876432 122357889999999999999999999975
No 102
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=87.64 E-value=1.4 Score=52.23 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCeEeecCcccchHHHhhhCCcccCCCCceEe--eeCCceEEEcCCCcHHHHHHHhcccccCCCCCce
Q psy9574 276 IKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT--KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLR 353 (783)
Q Consensus 276 l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~~my~~--~~~~~~~~LrP~~~~~~~~~~~~~~~s~~~LPlr 353 (783)
..+.+++.+...||+|+.|-.|.+.+.+..-+.. ++...+ ..+.+.=+||++.-|++....+.+. +.+.-+++
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~----~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~-~r~~~~v~ 568 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG----VEALLLPSPISVEMSAMRLSLWTGLLATVVYNQ-NRQQNRVR 568 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS----CCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHH-TSSCCCCE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC----CCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCCcc
Confidence 4567788889999999999999998877654421 222333 2344556899999999988887665 33455799
Q ss_pred EEEecceeecCCCCCCCCcccceeEEEeceeEecCchh-------HHHHHHHHHHHHHHHHhhcCC
Q psy9574 354 FGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ-------IKNEIVVFNELVHKVYNEFGF 412 (783)
Q Consensus 354 ~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~-------~~~e~~e~~~~~~~i~~~lGl 412 (783)
+|++|+||+.+.. +.. ..+|..+..+-+-|.... ....|..+-..+..++..||+
T Consensus 569 lFEiG~Vf~~~~~-~~~---~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 569 IFESGLRFVPDTQ-APL---GIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEEEECTT-SST---TEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EEEeeeEEecCCC-ccc---CcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999987653 111 245666665544443210 011234556667777777776
No 103
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=84.60 E-value=0.56 Score=38.06 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=39.7
Q ss_pred EEecCCCCHHHHHHhhcccccC-ceE--EEEECCEEeecccccCCCceEEEeec
Q psy9574 12 LQFSKPITVLDVASHISVNLAK-TAI--VGKLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 12 ~~~~~g~t~~~i~~~~~~~~~~-~~v--~a~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
.+++.|+|+.++...+...++. .-+ +..|||+.++.+.++.++++|+++..
T Consensus 20 ~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 20 IVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp CCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEECS
T ss_pred EECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEECC
Confidence 3456889999999887654321 224 78899999999999999999999863
No 104
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=83.31 E-value=0.59 Score=40.02 Aligned_cols=58 Identities=12% Similarity=-0.024 Sum_probs=43.2
Q ss_pred EEecCCCCHHHHHHhhcccccCc-----eEEEEECCEEeecccccCCCceEEEeecCChhhHH
Q psy9574 12 LQFSKPITVLDVASHISVNLAKT-----AIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLN 69 (783)
Q Consensus 12 ~~~~~g~t~~~i~~~~~~~~~~~-----~v~a~vn~~~~~L~~~i~~~~~i~~v~~~s~~g~~ 69 (783)
.+++.|+|+.+++...+.....+ .++.-|||+.+++++++.+++.||++..-..+-+.
T Consensus 30 ~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~~DPk~ 92 (97)
T 2hj1_A 30 FQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADPKE 92 (97)
T ss_dssp EEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC-----
T ss_pred EEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEecccCCHHH
Confidence 47889999999999877432221 36778899999999999999999998865555443
No 105
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=82.22 E-value=1.4 Score=36.72 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=40.3
Q ss_pred EEEecCCCCHHHHHHhhcccccC-------------ceEEEEECCEEeecccccCCCceEEEee
Q psy9574 11 KLQFSKPITVLDVASHISVNLAK-------------TAIVGKLNGVLVDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~~-------------~~v~a~vn~~~~~L~~~i~~~~~i~~v~ 61 (783)
..+++.|+|+.++...+...++. +.+...||++.+++++++..+++|.|+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 34566799999998887654321 2367789999999999999999999875
No 106
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=80.62 E-value=2 Score=34.58 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=43.4
Q ss_pred eEEEEcCC---eEEEecCCCCHHHHHHhhccccc--C--ceEEEEECCEE-eecccccCCCceEEEee
Q psy9574 2 ISIQISNE---LKLQFSKPITVLDVASHISVNLA--K--TAIVGKLNGVL-VDLSYVIDHDVNLIIIT 61 (783)
Q Consensus 2 i~i~~~~g---~~~~~~~g~t~~~i~~~~~~~~~--~--~~v~a~vn~~~-~~L~~~i~~~~~i~~v~ 61 (783)
|+|.+... ...++ .|+|+.++...+..... . ..++..||++. .+.++++.++++|.++.
T Consensus 3 v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 3 VEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp EEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred EEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 56655421 34566 78999999988864321 0 35788899998 78899999999999875
No 107
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=75.65 E-value=3.1 Score=35.53 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=39.1
Q ss_pred eEEEecCCCCHHHHHHhhccccc---C---------ceE-------EEEECCEEe----ecccccCCCceEEEeec
Q psy9574 10 LKLQFSKPITVLDVASHISVNLA---K---------TAI-------VGKLNGVLV----DLSYVIDHDVNLIIITE 62 (783)
Q Consensus 10 ~~~~~~~g~t~~~i~~~~~~~~~---~---------~~v-------~a~vn~~~~----~L~~~i~~~~~i~~v~~ 62 (783)
+..+++ +.|+.|+...+...++ . +-+ +..||++.+ ++++++.++++|.++..
T Consensus 21 ~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 21 PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 355666 8999999888764321 1 124 788999988 78999999999999863
No 108
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=69.41 E-value=8.9 Score=32.04 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=38.8
Q ss_pred EEEecCCCCHHHHHHhhccccc---------------CceEEEEECCEEee----cccccCCCceEEEee
Q psy9574 11 KLQFSKPITVLDVASHISVNLA---------------KTAIVGKLNGVLVD----LSYVIDHDVNLIIIT 61 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~---------------~~~v~a~vn~~~~~----L~~~i~~~~~i~~v~ 61 (783)
..+ ..|+|+.++...+...++ .+.+...||++.++ +++++..+++|.|+.
T Consensus 20 ~~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 20 SVS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp EEE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred EEe-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 345 468999999888764332 12488899999998 699999999999886
No 109
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=62.07 E-value=21 Score=35.32 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+-++...++ +.|-||.++|-+. ...+.-..+.+.|+++||+|.+... .-..++..|
T Consensus 76 t~emi~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID--pd~~qi~aA 144 (243)
T 1m5w_A 76 TEEMLAIAVE---------TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID--ADEEQIKAA 144 (243)
T ss_dssp SHHHHHHHHH---------HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHH
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHH
Confidence 5667777766 4689999999751 3577888999999999999998764 334889999
Q ss_pred hcCCCCEE
Q psy9574 585 SLEKLPYI 592 (783)
Q Consensus 585 ~~~gip~~ 592 (783)
.+.|+|++
T Consensus 145 ~~~GA~~I 152 (243)
T 1m5w_A 145 AEVGAPFI 152 (243)
T ss_dssp HHTTCSEE
T ss_pred HHhCcCEE
Confidence 99999986
No 110
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=61.69 E-value=17 Score=36.69 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCc------------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISK------------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~------------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A 584 (783)
.+-++...++ +.|.||.++|-+. ...+....+.+.|+++||+|.+... .-..++..|
T Consensus 104 t~emi~ial~---------~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID--pd~~qI~aA 172 (278)
T 3gk0_A 104 TPEMLDIACE---------IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID--PDEAQIRAA 172 (278)
T ss_dssp SHHHHHHHHH---------HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHH
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHH
Confidence 6677777766 4689999999762 2467778888999999999998764 344689999
Q ss_pred hcCCCCEE
Q psy9574 585 SLEKLPYI 592 (783)
Q Consensus 585 ~~~gip~~ 592 (783)
.+.|+|++
T Consensus 173 ~~~GAd~I 180 (278)
T 3gk0_A 173 HETGAPVI 180 (278)
T ss_dssp HHHTCSEE
T ss_pred HHhCcCEE
Confidence 99999976
No 111
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=58.01 E-value=14 Score=36.87 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEecCcc----------hHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhc
Q psy9574 517 LERFIAILVENYSGAMPLWLAPIQVMILNISKE----------QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSL 586 (783)
Q Consensus 517 ieRli~~LlE~~~~~~P~~lap~qv~Vi~~~~~----------~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~ 586 (783)
.+-++...++ +.|.||.++|-+.+ ..+.-..+.+.|+++||+|.+... .-..++..|..
T Consensus 75 t~emi~ial~---------~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~ 143 (260)
T 3o6c_A 75 NDEILNLALK---------LKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN--PSLEDIEKSKI 143 (260)
T ss_dssp CHHHHHHHHH---------HCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHH
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHH
Confidence 5677777766 46899999997632 345566788899999999998764 33468999999
Q ss_pred CCCCEE
Q psy9574 587 EKLPYI 592 (783)
Q Consensus 587 ~gip~~ 592 (783)
.|++++
T Consensus 144 ~GAd~I 149 (260)
T 3o6c_A 144 LKAQFI 149 (260)
T ss_dssp TTCSEE
T ss_pred hCCCEE
Confidence 999976
No 112
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=48.34 E-value=18 Score=34.09 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=38.3
Q ss_pred EEEecCCCCHHHHHHhhccccc------------CceEEEEECCEEeec----ccccCCCceEEEee
Q psy9574 11 KLQFSKPITVLDVASHISVNLA------------KTAIVGKLNGVLVDL----SYVIDHDVNLIIIT 61 (783)
Q Consensus 11 ~~~~~~g~t~~~i~~~~~~~~~------------~~~v~a~vn~~~~~L----~~~i~~~~~i~~v~ 61 (783)
..+++. +|+.++...+...++ .+.++..||++.++. ++++..+++|.|+.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 456664 899999988764421 244688999999988 88999999888865
No 113
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=46.20 E-value=8.1 Score=41.85 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=46.7
Q ss_pred eEEEecCCCCHHHHHHhhcccccCceEEE--EECCEEeecccccCCCceEEEeec
Q psy9574 10 LKLQFSKPITVLDVASHISVNLAKTAIVG--KLNGVLVDLSYVIDHDVNLIIITE 62 (783)
Q Consensus 10 ~~~~~~~g~t~~~i~~~~~~~~~~~~v~a--~vn~~~~~L~~~i~~~~~i~~v~~ 62 (783)
....++.|+|+.|+|..+.....+..+.| .+|++.+.+++.+.++..|+|++-
T Consensus 341 ~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 341 HVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC
T ss_pred eeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeC
Confidence 56678899999999999988888888888 779999999999998888999874
No 114
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=45.19 E-value=35 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=34.8
Q ss_pred CCCCHHHHHHhhcccccC---------------ceEEEEECCEEee----cccccCCCceEEEee
Q psy9574 16 KPITVLDVASHISVNLAK---------------TAIVGKLNGVLVD----LSYVIDHDVNLIIIT 61 (783)
Q Consensus 16 ~g~t~~~i~~~~~~~~~~---------------~~v~a~vn~~~~~----L~~~i~~~~~i~~v~ 61 (783)
.|+|+.++...+...+.. +-+...||++.++ +++++..+++|.|+-
T Consensus 30 ~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 30 DPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp SCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 789999998886533311 1256889999875 789999999999875
No 115
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=42.86 E-value=73 Score=29.57 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEcCcc-cCcEEEEEecCCCCCHHHHH-HHHHHHHHHHhcC
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPDSQIAIGPVI-ENGFYYDFLYKRSFTKEDLI-LIEKKMIELSQKN 131 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~-~Ie~~m~~iI~~~ 131 (783)
..--||+.||++.-+++-. +..+.++|.- ..|||.-+- + ..+.+++. .+++-|+.+.+++
T Consensus 53 ~~~iHTlEHL~A~~lRnh~-~~iId~sPMGCrTGFYlil~-G-~~~~~~v~~~~~~~l~~Il~~~ 114 (166)
T 1vje_A 53 PAAIHTLEHLLAGYMRDHL-EGVVDVSPMGARTGMYMAVI-G-EPDEQGVMKAFEAALKDTAGHD 114 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTEEEEEECTTSSEEEEEEE-S-SCCHHHHHHHHHHHHHHHHTCC
T ss_pred CcchhHHHHHHHHHHhcCC-CCeEEECCcccccccEEEEe-C-CCCHHHHHHHHHHHHHHHHhcC
Confidence 4457999999999999976 4566777643 369998775 3 34555554 5777788877533
No 116
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=38.61 E-value=86 Score=28.91 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEcCcc-cCcEEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPDSQIAIGPVI-ENGFYYDFLYKRSFTKEDLI-LIEKKMIELSQ 129 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~-~Ie~~m~~iI~ 129 (783)
..--||+.||++.-+++-. +.-+.++|.- ..|||.-+- + ..+.+++. .+++-|+.+.+
T Consensus 51 ~~~iHTlEHL~A~~lRnh~-~~iId~sPMGCrTGFYlil~-G-~~~~~~v~~~~~~~l~~Il~ 110 (160)
T 1j6x_A 51 MPSLHSLEHLVAEIIRNHA-NYVVDWSPMGCQTGFYLTVL-N-HDNYTEILEVLEKTMQDVLK 110 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHC-SCEEEEEECTTSSEEEEEEE-S-CCCHHHHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHhhCC-CCeEEECCcCcchhcEEEEe-C-CCCHHHHHHHHHHHHHHHHh
Confidence 4457999999999999976 4566666643 369998775 3 34555555 56777777763
No 117
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=35.10 E-value=67 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=37.3
Q ss_pred EEec---CCCCHHHHHHhhcccc-------------cCceEEEEECCEEe----ecccccCCCceEEEee
Q psy9574 12 LQFS---KPITVLDVASHISVNL-------------AKTAIVGKLNGVLV----DLSYVIDHDVNLIIIT 61 (783)
Q Consensus 12 ~~~~---~g~t~~~i~~~~~~~~-------------~~~~v~a~vn~~~~----~L~~~i~~~~~i~~v~ 61 (783)
.+++ .+.|+.++...+...+ -.+-|...||++-| .+.+++.++++|.|+.
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 4555 3369999988876543 23458899999754 5789999999999976
No 118
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=33.68 E-value=1e+02 Score=28.96 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCC--C-eEEEcCcc-cCcEEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPD--S-QIAIGPVI-ENGFYYDFLYKRSFTKEDLI-LIEKKMIELSQ 129 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~--~-~~~~~~s~-~~g~y~d~~~~~~~t~e~l~-~Ie~~m~~iI~ 129 (783)
..--||+.||++.-+++-..+ . -+.++|.- ..|||.-+- + ..+.+++. .+++-|+.+.+
T Consensus 50 ~~~iHTlEHL~A~~lRnh~~~~~~~iId~sPMGCrTGFYlil~-G-~~~~~~v~~~~~~~l~~Il~ 113 (175)
T 1j6w_A 50 PKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLI-G-TPNEQKVSEAWLASMQDVLG 113 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBEEEEEEECTTSSEEEEEEE-S-CCCHHHHHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHhhCccCCCCeEEEeCCcCcccccEEEEe-C-CCCHHHHHHHHHHHHHHHHh
Confidence 445799999999999986532 2 45555533 269998775 3 35555554 57777777763
No 119
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=30.26 E-value=1.2e+02 Score=34.27 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=38.8
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhcccc--------------cCceEEEEECCE-E-eecccccCCCceEE
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHISVNL--------------AKTAIVGKLNGV-L-VDLSYVIDHDVNLI 58 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~~~~--------------~~~~v~a~vn~~-~-~~L~~~i~~~~~i~ 58 (783)
||+|++ ||+..+++.|+|+.+.+...+... .-..-.+.|||. + ..=..++.++..|.
T Consensus 1 mv~~~i-ng~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~ 73 (574)
T 3c8y_A 1 MKTIII-NGVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIIN 73 (574)
T ss_dssp CEEEEE-TTEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEE
T ss_pred CeEEEE-CCEEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEE
Confidence 788887 899999999999999999875311 113445678886 2 23344666555443
No 120
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=29.46 E-value=94 Score=28.82 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=33.2
Q ss_pred ceEEEEecCc------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 539 IQVMILNISK------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 539 ~qv~Vi~~~~------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
++++.+.++. +..+...+.++.. ...+.+..|. +..+.+++ ...++|..++|+. +|.|.-+.
T Consensus 80 v~vv~v~~d~~~~~~~d~~~~~~~~~~~~-~~~~~~~~d~-~~~~~~~~---~v~~~P~~~lid~----~G~i~~~~ 147 (196)
T 2ywi_A 80 VSFVAINSNDAEQYPEDSPENMKKVAEEL-GYPFPYLYDE-TQEVAKAY---DAACTPDFYIFDR----DLKCVYRG 147 (196)
T ss_dssp CEEEEEECSCTTTCGGGSHHHHHHHHHHH-TCCSCEEECS-SCHHHHHH---TCCEESEEEEEET----TCBEEEEE
T ss_pred cEEEEEECCccccccccCHHHHHHHHHHc-CCCceEEECC-chHHHHHh---CCCCCCeEEEEcC----CCeEEEcc
Confidence 4555555542 2333344444433 2345555553 45565555 4567899988864 46665443
No 121
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=29.40 E-value=53 Score=31.67 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=34.5
Q ss_pred ceEEEEecCc------chHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 539 IQVMILNISK------EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 539 ~qv~Vi~~~~------~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
++++.|.+++ +..+...+.++.. ...+.+..|. +..+.+++ ...++|..++|+. +|+|..+.
T Consensus 93 v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~-~~~~~~l~D~-~~~~~~~~---~v~~~P~~~liD~----~G~i~~~g 160 (218)
T 3u5r_E 93 LAVVAINSNDAQAFPEETLERVGAEVKAY-GYGFPYLKDA-SQSVAKAY---GAACTPDFFLYDR----ERRLVYHG 160 (218)
T ss_dssp EEEEEEECSCTTTCGGGSHHHHHHHHHHH-TCCSCEEECT-TCHHHHHH---TCCEESEEEEECT----TCBEEEEE
T ss_pred cEEEEEECCcccccccCCHHHHHHHHHHh-CCCccEEECC-ccHHHHHc---CCCCCCeEEEECC----CCcEEEec
Confidence 4555555531 3334444444443 2356666664 45565554 4567899999964 46665554
No 122
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=28.85 E-value=1.1e+02 Score=26.81 Aligned_cols=43 Identities=14% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHhHhCCC--eEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 559 NFLKSKKF--RVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 559 ~~Lr~~gi--~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
+.+...|+ .+..|. +..+.+++ ...++|.+++++. +|.+.-+.
T Consensus 79 ~~~~~~~~~~~~~~d~-~~~~~~~~---~i~~~P~~~lid~----~G~i~~~~ 123 (153)
T 2l5o_A 79 QYVKDYGLPFTVMYDA-DKAVGQAF---GTQVYPTSVLIGK----KGEILKTY 123 (153)
T ss_dssp HHHHHTTCCSEEEECS-SCHHHHHH---TCCSSSEEEEECS----SSCCCEEE
T ss_pred HHHHHcCCCceEEcCc-hHHHHHHc---CCCccCeEEEECC----CCcEEEEE
Confidence 33444454 444443 34555444 4568899988864 35554333
No 123
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=28.49 E-value=81 Score=29.04 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCC----CeEEEcCcc-cCcEEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q psy9574 69 NIIRHSTAHLLAYAVKNLFPD----SQIAIGPVI-ENGFYYDFLYKRSFTKEDLI-LIEKKMIELSQ 129 (783)
Q Consensus 69 ~~y~hS~~~lL~~A~~~l~p~----~~~~~~~s~-~~g~y~d~~~~~~~t~e~l~-~Ie~~m~~iI~ 129 (783)
..--||+.||++.-+++-... .-+.++|.= ..|||.-+-. ..+.+++. .+++-|+.+.+
T Consensus 50 ~~~iHTlEHL~A~~lRnh~~~~~~~~iId~sPMGCrTGFYl~l~G--~~~~~~v~~~~~~~l~~il~ 114 (157)
T 1j98_A 50 PDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSG--ETTSAEIVDLLEDTMKEAVE 114 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECTTSSEEEEEEEE--CCCHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHhcCccccCCCCEEEeCCcCcccccEEEEeC--CCCHHHHHHHHHHHHHHHHh
Confidence 445799999999999996642 345555533 2699987653 35565555 57777777763
No 124
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=28.46 E-value=1.1e+02 Score=26.42 Aligned_cols=11 Identities=18% Similarity=0.461 Sum_probs=5.9
Q ss_pred cCCCCEEEEEc
Q psy9574 586 LEKLPYIIIVG 596 (783)
Q Consensus 586 ~~gip~~iivG 596 (783)
..++|..++|+
T Consensus 107 v~~~P~~~lid 117 (142)
T 3ewl_A 107 IRATPTIYLLD 117 (142)
T ss_dssp CCSSSEEEEEC
T ss_pred CCCCCeEEEEC
Confidence 34556555554
No 125
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=27.06 E-value=56 Score=29.01 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=28.7
Q ss_pred ceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECC--CccHHHHHHHhhcCCCCEEEEEcccccccCceeEE
Q psy9574 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR--NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITER 608 (783)
Q Consensus 539 ~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~--~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr 608 (783)
++++.+.+++... ...+..+.. ...+.+..|.. +..+.+ .....++|..++|+. +|+|.-+
T Consensus 63 ~~vv~v~~d~~~~-~~~~~~~~~-~~~~~~~~d~~~~~~~~~~---~~~v~~~P~~~lid~----~G~i~~~ 125 (152)
T 2lrn_A 63 FTIYGVSTDRREE-DWKKAIEED-KSYWNQVLLQKDDVKDVLE---SYCIVGFPHIILVDP----EGKIVAK 125 (152)
T ss_dssp EEEEEEECCSCHH-HHHHHHHHH-TCCSEEEEECHHHHHHHHH---HTTCCSSCEEEEECT----TSEEEEE
T ss_pred eEEEEEEccCCHH-HHHHHHHHh-CCCCeEEecccchhHHHHH---HhCCCcCCeEEEECC----CCeEEEe
Confidence 4455555554322 222222222 33456666542 122322 234567888888864 3555433
No 126
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=26.24 E-value=99 Score=28.63 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=44.2
Q ss_pred CCCCCCceEEEEecCcch------HHHHHHHHHHhHhCCCeEE----EECCCccHHHHHHHhhcCCCCEEEEEcc
Q psy9574 533 PLWLAPIQVMILNISKEQ------IEYAKKVFNFLKSKKFRVE----VDLRNEKIAYKIRLHSLEKLPYIIIVGN 597 (783)
Q Consensus 533 P~~lap~qv~Vi~~~~~~------~~~a~~i~~~Lr~~gi~v~----~d~~~~~l~~k~~~A~~~gip~~iivG~ 597 (783)
|..+.+..|.|+.++++. .....-++..|++.|+.+. +-|. +.+...++.|-..++-.+|+-|-
T Consensus 2 ~~~~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 2 PGSMTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp -----CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCCCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 334556779999998753 2345678899999998653 4455 78888998886567888888874
No 127
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=24.35 E-value=51 Score=29.20 Aligned_cols=61 Identities=13% Similarity=0.310 Sum_probs=32.4
Q ss_pred ceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 539 ~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
++++.+.+++.. +...+.++.. ...+.+..|. +..+.+++ ...++|.+++++. +|.+.-+.
T Consensus 60 v~vv~v~~d~~~-~~~~~~~~~~-~~~~~~~~d~-~~~~~~~~---~v~~~P~~~lid~----~G~i~~~~ 120 (151)
T 2f9s_A 60 VEIVAVNVGESK-IAVHNFMKSY-GVNFPVVLDT-DRQVLDAY---DVSPLPTTFLINP----EGKVVKVV 120 (151)
T ss_dssp EEEEEEEESCCH-HHHHHHHHHH-TCCSCEEEET-TSHHHHHT---TCCSSCEEEEECT----TSEEEEEE
T ss_pred eEEEEEECCCCH-HHHHHHHHHc-CCCceEEECC-chHHHHhc---CCCCCCeEEEECC----CCcEEEEE
Confidence 445555444332 2333333332 2346666664 34555444 4678999999964 46665444
No 128
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.71 E-value=54 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=22.5
Q ss_pred CeEEEE--cCCe--EEEecCCCCHHHHHHhhc
Q psy9574 1 MISIQI--SNEL--KLQFSKPITVLDVASHIS 28 (783)
Q Consensus 1 ~i~i~~--~~g~--~~~~~~g~t~~~i~~~~~ 28 (783)
|++|++ ++|. ..+++.|.|+.+.+..-+
T Consensus 6 m~~V~~~~~~g~~~~v~~~~g~tLL~aa~~~g 37 (108)
T 2bt6_A 6 KITVHFINRDGETLTTKGKIGDSLLDVVVQNN 37 (108)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHTT
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHcC
Confidence 567776 5787 778899999999997754
No 129
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=22.11 E-value=2.5e+02 Score=25.42 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=20.1
Q ss_pred CeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 566 FRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 566 i~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
+.+..|. +..+.+.+......++|..++|+. +|+|.-+.
T Consensus 125 ~~~~~d~-~~~~~~~~~~~~v~~~P~~~lid~----~G~i~~~~ 163 (183)
T 3lwa_A 125 YPSIYDP-PFMTAASLGGVPASVIPTTIVLDK----QHRPAAVF 163 (183)
T ss_dssp SCEEECT-TCGGGGGTTTCCTTCCSEEEEECT----TSCEEEEE
T ss_pred ccEEECC-cchHHHHhccCCCCCCCeEEEECC----CCcEEEEE
Confidence 4555554 344444443223456787777754 35554444
No 130
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=21.94 E-value=1e+02 Score=26.28 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=33.0
Q ss_pred ceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHhhcCCCCEEEEEcccccccCceeEEE
Q psy9574 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 539 ~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
++++.+.+.+. .+...+.++.. ...+.+..|. +..+.+++ ...++|.+++++. +|++. +.
T Consensus 56 ~~~~~v~~~~~-~~~~~~~~~~~-~~~~~~~~d~-~~~~~~~~---~i~~~P~~~lid~----~G~i~-~~ 115 (136)
T 1lu4_A 56 VTFVGIATRAD-VGAMQSFVSKY-NLNFTNLNDA-DGVIWARY---NVPWQPAFVFYRA----DGTST-FV 115 (136)
T ss_dssp SEEEEEECSSC-HHHHHHHHHHH-TCCSEEEECT-TSHHHHHT---TCCSSSEEEEECT----TSCEE-EE
T ss_pred cEEEEEEcCCC-HHHHHHHHHHc-CCCceEEECC-chhHHHhc---CCCCCCEEEEECC----CCcEE-EE
Confidence 45555555443 22333333332 2345555543 45566554 4678999999965 46666 55
No 131
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=21.35 E-value=1.3e+02 Score=26.68 Aligned_cols=63 Identities=5% Similarity=0.125 Sum_probs=33.1
Q ss_pred ceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECCCccHHHHHHHh---hcCCCCEEEEEcccccccCceeEEE
Q psy9574 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH---SLEKLPYIIIVGNKELCENKITERE 609 (783)
Q Consensus 539 ~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~~A---~~~gip~~iivG~~e~~~~~V~vr~ 609 (783)
++++-+.+++. .+.+.+.++.. ...+.+..|. ..+.+.+... ...++|..++|+. +|.|.-+.
T Consensus 68 v~~v~v~~d~~-~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~i~~~P~~~lid~----~G~i~~~~ 133 (165)
T 3or5_A 68 FTFVGIAVNEQ-LPNVKNYMKTQ-GIIYPVMMAT--PELIRAFNGYIDGGITGIPTSFVIDA----SGNVSGVI 133 (165)
T ss_dssp EEEEEEECSCC-HHHHHHHHHHH-TCCSCEEECC--HHHHHHHHTTSTTCSCSSSEEEEECT----TSBEEEEE
T ss_pred eEEEEEECCCC-HHHHHHHHHHc-CCCCceEecC--HHHHHHHhhhhccCCCCCCeEEEECC----CCcEEEEE
Confidence 44444444432 22333333332 2345555553 3566666544 5678999999974 46665444
No 132
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.22 E-value=2.5e+02 Score=23.23 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=42.0
Q ss_pred eEEEEcCCeEE--EecCCCCHHHHHHh----hcccccCceEEEEECCEEeecccc-----cCCCceEEEeecC
Q psy9574 2 ISIQISNELKL--QFSKPITVLDVASH----ISVNLAKTAIVGKLNGVLVDLSYV-----IDHDVNLIIITEK 63 (783)
Q Consensus 2 i~i~~~~g~~~--~~~~g~t~~~i~~~----~~~~~~~~~v~a~vn~~~~~L~~~-----i~~~~~i~~v~~~ 63 (783)
+.|..++|+.. .+..++++.||.++ ++.+ ..-..-+-|++.+||+-| +..++.+|.+..+
T Consensus 12 v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred EEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 46677788654 45668899998655 3322 222456789999999987 4788999998743
No 133
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=21.11 E-value=1.2e+02 Score=35.65 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=24.7
Q ss_pred CeEEEEcCCeEEEecCCCCHHHHHHhhc
Q psy9574 1 MISIQISNELKLQFSKPITVLDVASHIS 28 (783)
Q Consensus 1 ~i~i~~~~g~~~~~~~g~t~~~i~~~~~ 28 (783)
|++|++ ||+..++++|+|+.+.+...+
T Consensus 1 mv~i~i-dg~~~~v~~g~til~a~~~~g 27 (783)
T 3i9v_3 1 MVRVKV-NDRIVEVPPGTSVMDAVFHAG 27 (783)
T ss_dssp CEEEEC-SSCEEEECTTCBHHHHHHHTT
T ss_pred CeEEEE-CCEEEEeCCCChHHHHHHHhC
Confidence 789998 899999999999999998866
No 134
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=21.01 E-value=48 Score=30.28 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=42.5
Q ss_pred CceEEEEecCcchHHHHHHHHHHhHhCCCeEEEECC----CccHHHHHHHhhcCCCC-EEEEEccccc
Q psy9574 538 PIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR----NEKIAYKIRLHSLEKLP-YIIIVGNKEL 600 (783)
Q Consensus 538 p~qv~Vi~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~~k~~~A~~~gip-~~iivG~~e~ 600 (783)
.++|.|..-+++....+..++..|+..|++|-+|.+ +..+...+..|-. ... .++++.+.-+
T Consensus 20 ~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~-~s~~~i~v~S~~y~ 86 (154)
T 3h16_A 20 PHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLG-SSRFGIVVLSTHFF 86 (154)
T ss_dssp SEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHT-SEEEEEEEEEHHHH
T ss_pred CceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHH-hCcEEEEEeCcchh
Confidence 589988877766445789999999999999999874 3456666655543 233 3445554443
No 135
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=20.88 E-value=83 Score=29.69 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=28.5
Q ss_pred CceEEEEecCcch-HHHHHHHHHHhHhCCCeEEEECCCccHHHHHH
Q psy9574 538 PIQVMILNISKEQ-IEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIR 582 (783)
Q Consensus 538 p~qv~Vi~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k~~ 582 (783)
.++|.|-.-+++. ...+..++..|...||++-+|+++-..|..+.
T Consensus 8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~ 53 (176)
T 3jrn_A 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFS 53 (176)
T ss_dssp CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC---------
T ss_pred CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchH
Confidence 4788877655443 35778899999999999999987655665554
No 136
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=20.04 E-value=1.7e+02 Score=27.41 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhHhC-CCeEEEE---CCCccHHHHHHHhhcCCCCEEEEEc
Q psy9574 550 QIEYAKKVFNFLKSK-KFRVEVD---LRNEKIAYKIRLHSLEKLPYIIIVG 596 (783)
Q Consensus 550 ~~~~a~~i~~~Lr~~-gi~v~~d---~~~~~l~~k~~~A~~~gip~~iivG 596 (783)
..+.|.++.+.|++. |++|.+- +..-++..+.+.|...+.-+.|-|-
T Consensus 30 ~l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH 80 (179)
T 1jwq_A 30 NLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIH 80 (179)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEc
Confidence 467889999999999 9999874 2235799999999999999888774
Done!