RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9574
(783 letters)
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 1039 bits (2690), Expect = 0.0
Identities = 340/609 (55%), Positives = 456/609 (74%), Gaps = 1/609 (0%)
Query: 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIII 60
MI I + + +F +TV DVA+ IS LAK A+ GK+NG LVDLS I+ D +L II
Sbjct: 1 MIKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEII 60
Query: 61 TEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILI 120
T KD GL IIRHS AHLLA AVK L+PD+++ IGPVIENGFYYDF +R FT EDL I
Sbjct: 61 TAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAI 120
Query: 121 EKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDL 180
EK+M E+ ++N ++ ++R++AI F E +K ++I IP ++EISLY G FVDL
Sbjct: 121 EKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDL 180
Query: 181 CRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEK 240
CRGPHV STGK+K FKL+K+AG+YW+G+ KNK LQRIYGTA++ KK+ + YLH ++EA+K
Sbjct: 181 CRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAKK 240
Query: 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
RDHRKLGK+L+LFHFQEE+PGL FWHPKG+ I +E+++Y+R+ + GY+E+KTPQ+LD
Sbjct: 241 RDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDR 300
Query: 301 SLWKKTGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQ 359
LW+ +GHW++Y++NMF T +S+ YALKPMNCPGH+QIY SYRDLPLR EFG
Sbjct: 301 ELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGT 360
Query: 360 CHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKL 419
HR E SG+LHG+MR R F QDD HIFCT QI+ E+ +L+ VY +FGF+ ++KL
Sbjct: 361 VHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFEDYEVKL 420
Query: 420 ALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQC 479
+ RP KRIG + +WD AE +L+EA+ G+ +E PGEGAFYGPKI++ LKD++GR WQC
Sbjct: 421 STRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQC 480
Query: 480 GTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPI 539
GTIQ+DF++P R Y+ E+ + PVM+HRAI+GS+ERFI IL+E+Y+GA P WLAP+
Sbjct: 481 GTIQLDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPV 540
Query: 540 QVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKE 599
QV++L I+ + +YAK+V LK+ RVEVDLRNEKI YKIR L+K+PY+++VG+KE
Sbjct: 541 QVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQKVPYMLVVGDKE 600
Query: 600 LCENKITER 608
+ ++ R
Sbjct: 601 VEAGTVSVR 609
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 807 bits (2086), Expect = 0.0
Identities = 271/545 (49%), Positives = 379/545 (69%), Gaps = 6/545 (1%)
Query: 67 GLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIE 126
GL +IRHS AH+LA AV+ LFPD+++ IGP IE+GFYYDF FT EDL IEKKM +
Sbjct: 5 GLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEKKMKK 64
Query: 127 LSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCRGPHV 186
+ ++ F ++ ++R++A F NE +K ++I+ IP + I++Y G F DLCRGPHV
Sbjct: 65 IIKRGLPFEREEVSREEAREEFA--NEPYKLELIDDIPE-EGITIYDNGDFEDLCRGPHV 121
Query: 187 FSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKL 246
+T +K FKL +AG+YW+G++KN +LQRIYGTAW TK++ + YL ++EA+KRDHRKL
Sbjct: 122 PNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWETKEELKEYLKRLEEAKKRDHRKL 181
Query: 247 GKQLNLFHFQEES-PGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK 305
GK+L+LF F +E PGL WHPKG II +EI+ Y+RK + GY+ + TP + LWK
Sbjct: 182 GKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT 241
Query: 306 TGHWENYKDNMFTT-KSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNE 364
+GH +NYK+NMF + + Y LKPMNCPGHI IY S SYRDLPLR EFG +R E
Sbjct: 242 SGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYE 301
Query: 365 SSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALR-P 423
SG LHG+ R R F QDD HIFCT QI++EI+ + V ++ +FGFK ++L+ R P
Sbjct: 302 KSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREP 361
Query: 424 NKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQ 483
K +G++ +W+ A +LREA+ G+ + E PG AFYGPKI+ +KD++GR WQ TIQ
Sbjct: 362 EKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQ 421
Query: 484 IDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMI 543
+DF++P R EY AE+ R+ PVM+HRA+ GS+ERFI IL E+Y+GA P WLAP+QV+I
Sbjct: 422 LDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLAPVQVVI 481
Query: 544 LNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCEN 603
+ ++ EYA++V L++ RVEVD NE++ KIR +K+PY+++VG+KE+
Sbjct: 482 IPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQKQKIPYMLVVGDKEVEAG 541
Query: 604 KITER 608
++ R
Sbjct: 542 TVSVR 546
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 589
Score = 737 bits (1905), Expect = 0.0
Identities = 295/576 (51%), Positives = 404/576 (70%), Gaps = 20/576 (3%)
Query: 35 AIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAI 94
A+ ++G L IIT +D GL IIRHS AH+LA AVK L+PD + I
Sbjct: 2 ALAIHVDGELDLKD---------EIITAEDEEGLEIIRHSCAHVLAQAVKRLYPD--VTI 50
Query: 95 GPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQ 154
GPVIE GFYYDF K T EDL+ IEK+M E++++N ++ ++R++A A F
Sbjct: 51 GPVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPF----GP 106
Query: 155 FKKKIINLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKL 214
+K ++I+ +S YS G FVDLCRGPHV STGK+ FKL+KLAG+YW+G++ N+ L
Sbjct: 107 YKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKIA-FKLLKLAGAYWRGDENNEML 163
Query: 215 QRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEES-PGLIFWHPKGYIIL 273
QRIYGTA++ KK+ E YL ++EA+KRDHRKLGK+L+LF F E PGL FWHPKG I
Sbjct: 164 QRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIR 223
Query: 274 QEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNC 333
++ Y+R + GY+E+KTP + DL LW+ +GHW+NYK++MF T+S++R YALKPMNC
Sbjct: 224 NLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNC 283
Query: 334 PGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIK 393
PGHI I+ S SYR+LPLR EFG +R E SG+LHG+MR R F QDD HIFCT QIK
Sbjct: 284 PGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIK 343
Query: 394 NEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEE 453
+E EL+ +VY +FGF ++KL+ RP K IG + +WD AE +LREA+ GV + E
Sbjct: 344 DEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMWDKAEAALREALKEIGVEYVE 402
Query: 454 FPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAI 513
PGEGAFYGPKI++ +KD++GR WQ GTIQ+DF++P R EY+ E+ +K PV++HRAI
Sbjct: 403 EPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAI 462
Query: 514 IGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR 573
+GS+ERFI IL+E+Y+GA+P WLAP+QV ++ ++ E ++YAK+V L+ RV++D R
Sbjct: 463 LGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDR 522
Query: 574 NEKIAYKIRLHSLEKLPYIIIVGNKELCENKITERE 609
NEK+ KIR +K+PY+I+VG+KE+ + R
Sbjct: 523 NEKLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRR 558
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 691 bits (1785), Expect = 0.0
Identities = 282/632 (44%), Positives = 425/632 (67%), Gaps = 10/632 (1%)
Query: 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIII 60
MI I+ + +F K IT+ ++A IS +L K A+ GK+N L DL ++ D + II
Sbjct: 5 MIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEII 64
Query: 61 TEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILI 120
T N G+ I RHS AH+LA AVK L+ D + +GPVIENGFYYD S EDL I
Sbjct: 65 TIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKI 124
Query: 121 EKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDL 180
EK+M ++ +N + ++R++A F +N++ K +++ IP+ + I+LY G FVDL
Sbjct: 125 EKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDL 184
Query: 181 CRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEK 240
CRGPH+ STG LK F+L ++G+YW+G+ N+ LQRIYG A+S++K+ E YLH ++EA K
Sbjct: 185 CRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAK 244
Query: 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
R+HRKLGK+L LF F EE+PG+ F+ PKG II E++ ++R+I K Y+E++TP M++
Sbjct: 245 RNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQ 304
Query: 301 SLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQC 360
LW+++GHW++YKDNM+ ++ +N+ +ALKPMNCPGH+ ++ + HSYR+LP+R EFGQ
Sbjct: 305 ELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQV 364
Query: 361 HRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLA 420
HR+E SG+L+G++R R+F QDD H+F T QI++EI + VY FGF + +++L+
Sbjct: 365 HRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGF-EYEVELS 423
Query: 421 LRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480
RP +G++ +W+ AE SL + S + G+GAFYGPKI++H+KD++ RS QCG
Sbjct: 424 TRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCG 483
Query: 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQ 540
TIQ+DF MP + YI E N ++ PV++HRA++GSL+RF+AIL+E++ GA P WLAP+Q
Sbjct: 484 TIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQ 543
Query: 541 VMILNISKE-QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKE 599
V ++ +S ++YA +V + L RVE D R+EK+ YKIR ++K+PY++++G+KE
Sbjct: 544 VKVIPVSNAVHVQYADEVADKLAQAGIRVERDERDEKLGYKIREAQMQKIPYVLVIGDKE 603
Query: 600 LCENKITER--------EIIIDRPKHRINREI 623
+ + R I +D I EI
Sbjct: 604 MENGAVNVRKYGEEKSEVIELDMFVESIKEEI 635
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether. [Protein synthesis,
tRNA aminoacylation].
Length = 563
Score = 665 bits (1718), Expect = 0.0
Identities = 279/542 (51%), Positives = 380/542 (70%), Gaps = 5/542 (0%)
Query: 72 RHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKN 131
RHS AHLLA A+K L+PD ++AIGPV+E+GFYYDF RSFT+EDL IEK M E+++KN
Sbjct: 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKN 60
Query: 132 ELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIG-SFVDLCRGPHVFSTG 190
K +++ ++A+ F V E +K ++++ IPN + + Y G +FVDLC+GPH+ +T
Sbjct: 61 YPVAKLSVSLEEALEAF-KVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTS 119
Query: 191 KLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQL 250
+K FKL K+AG+YW+G+ KNK LQRIYGTAW+ KK YL ++EA+KRDHRKLGK+L
Sbjct: 120 FIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKEL 179
Query: 251 NLFHFQEES-PGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHW 309
LF F+ E PGL FW PKG I ++ ++R+ GY E++TP M DL LW+ +GHW
Sbjct: 180 ELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHW 239
Query: 310 ENYKDNMF-TTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGS 368
+NYK+ MF T+ +NR + LKPMNCPGH I+ S+ SYRDLPLR E G HR E SG
Sbjct: 240 DNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGE 299
Query: 369 LHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALR-PNKRI 427
LHG+MR R F QDD HIFCT+ QIK E L+ KVY++FGF K +L+ R P I
Sbjct: 300 LHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFI 359
Query: 428 GENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFS 487
GE+ +W+ AE +L EA+ GV +E PG GAFYGPKI++ KD++GR WQC T+Q+DF
Sbjct: 360 GEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCATVQLDFE 419
Query: 488 MPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNIS 547
+P R Y+ E+N K PVM+HRAI+GS+ERFIAIL+E Y+G PLWLAP+QV+++ ++
Sbjct: 420 LPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVIPVN 479
Query: 548 KEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITE 607
+ ++YAKKV LK RV+VD RNE++ KIR +K+PY+++VG+KE+ +
Sbjct: 480 ERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVVGDKEMESLAVNV 539
Query: 608 RE 609
R
Sbjct: 540 RT 541
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase.
Length = 686
Score = 542 bits (1398), Expect = 0.0
Identities = 236/585 (40%), Positives = 365/585 (62%), Gaps = 8/585 (1%)
Query: 19 TVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIITEKDNIGLNIIRHSTAHL 78
T +D+A IS LA +A++ +++GVL D++ ++ D L + D+ G + HS+AH+
Sbjct: 70 TPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHI 129
Query: 79 LAYAVKNLFPDSQIAIGPVIEN--GFYYD-FLYKRSFTKEDLILIEKKMIELSQKNELFL 135
L A++ + ++ IGP GFYYD F R+ +ED IE + + ++ + F
Sbjct: 130 LGEALELEY-GCKLCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFE 188
Query: 136 KKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCRGPHVFSTGKLKIF 195
+ +TR++A+ F +FK +IIN +P + I++Y G VDLCRGPH+ +T +K F
Sbjct: 189 RIEVTREEALEMFS--ENKFKVEIINDLPEDATITVYRCGPLVDLCRGPHIPNTSFVKAF 246
Query: 196 KLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHF 255
+K + +YW+G+ + LQR+YG ++ KK + Y H I+EA+KRDHR LG++ LF F
Sbjct: 247 ACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFF 306
Query: 256 QEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN 315
E SPG F+ P G I ++ ++R+ Y GY E+ TP + ++ LW+ +GH +YK+N
Sbjct: 307 HELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKEN 366
Query: 316 MFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRT 375
MF + E + + LKPMNCPGH ++ SYR+LPLR +FG HRNE SG+L G+ R
Sbjct: 367 MFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRV 426
Query: 376 RSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDL 435
R F QDD HIFC + QIK+E+ + + VY FGF ++KL+ RP K +G+ WD
Sbjct: 427 RRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF-TYELKLSTRPEKYLGDLETWDK 485
Query: 436 AENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAE 495
AE +L EA+++ G W+ G+GAFYGPKI+ + D++ R +QC T+Q+DF +P R
Sbjct: 486 AEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLS 545
Query: 496 YIAENNTRKT-PVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYA 554
Y AE+ + PVM+HRAI+GS+ER AIL+E+Y+G P WL+P Q +++ IS++ +YA
Sbjct: 546 YSAEDEAKIERPVMIHRAILGSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYA 605
Query: 555 KKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKE 599
++V L + F V+VD+ + KI K+R L + YI++VG E
Sbjct: 606 EEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILVVGEAE 650
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 538 bits (1387), Expect = 0.0
Identities = 241/543 (44%), Positives = 360/543 (66%), Gaps = 8/543 (1%)
Query: 71 IRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQK 130
IRH+ AH++A AV+ LFPD+++ IGP IENGFYYDF T +DL I+K+M + +
Sbjct: 46 IRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDF-DMEPLTDKDLKRIKKEMDRIISR 104
Query: 131 NELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGS-FVDLCRGPHVFST 189
N +++ ++R++A ++NE +K +I+ I + I++Y IG + DLC GPHV T
Sbjct: 105 NLPLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWDLCAGPHVERT 163
Query: 190 GKL--KIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLG 247
GK+ K +L +AG+YW+G++KN+ LQRIYGTAW +++ + YLH +EA++RDHR+LG
Sbjct: 164 GKINKKAVELESVAGAYWRGDEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLG 223
Query: 248 KQLNLFHFQEESPG-LIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT 306
+ L+LF Q+++ G L+FWHPKG I+ I+ +K++ +GY + TP + LWK +
Sbjct: 224 QDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTS 283
Query: 307 GHWENYKDNMFTTKS-ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNES 365
GH + YK+NM+ E+ Y L+PMNCP HI +Y HSYRDLP+R E G +R E
Sbjct: 284 GHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYEL 343
Query: 366 SGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNK 425
SGSLHG+ R R F QDD HIFC + QIK+EI +L ++ +FGF K +I L+ RP K
Sbjct: 344 SGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEK 403
Query: 426 RIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQID 485
+G ++IW+ A +LR+A+ G ++ G GAFYGPKI+ ++D++GR WQC TIQ+D
Sbjct: 404 SVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVD 463
Query: 486 FSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILN 545
F++P R Y+ N+ +K P+M+HRAI+GSLERF +L+E+Y+G PLWLAP+Q +L
Sbjct: 464 FNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPVQARVLP 523
Query: 546 ISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKI 605
++ ++EY K+V LK+K R EV E++ IR +K+P + +VG KE+ +
Sbjct: 524 VTDNELEYCKEVVAKLKAKGIRAEV-CHGERLPKLIRNAETQKIPLMAVVGPKEVETRTL 582
Query: 606 TER 608
T R
Sbjct: 583 TVR 585
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is
responsible for the attachment of threonine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain.
Length = 298
Score = 473 bits (1221), Expect = e-163
Identities = 154/298 (51%), Positives = 209/298 (70%)
Query: 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
R G+ F F E PGL FW PKG II E++ ++R++ + GY+E++TP + +
Sbjct: 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNK 60
Query: 301 SLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQC 360
LW+ +GHW++Y++NMF + E+ Y LKPMNCPGH I+ S SYRDLPLR EFG
Sbjct: 61 ELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTV 120
Query: 361 HRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLA 420
HR E SG+LHG+ R R F QDD HIFCT QIK EI +L+ +VY++FGF K++L+
Sbjct: 121 HRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELS 180
Query: 421 LRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480
RP K IG + +W+ AE +LREA+ G+ +E GEGAFYGPKI++H+KD++GR WQC
Sbjct: 181 TRPEKFIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCS 240
Query: 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSGAMPLWLAP 538
TIQ+DF++P R YI E+ +K PVM+HRAI+GS+ERFI IL+E+Y+G PLWLAP
Sbjct: 241 TIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional.
Length = 545
Score = 394 bits (1013), Expect = e-128
Identities = 173/401 (43%), Positives = 264/401 (65%), Gaps = 3/401 (0%)
Query: 211 NKKLQRIYGTAWSTKKDQEIYLHMIKEAEKRDHRKLGKQLNLFHFQEES-PGLIFWHPKG 269
N++ RI G A+ T++ + YL +++AE+ DHR +G++L+LF F EE+ GL+ +HPKG
Sbjct: 108 NEQYVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKG 167
Query: 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALK 329
I E+ +MR+I GY+E+ T + +WK +GH+ Y+D + E Y +K
Sbjct: 168 QTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVK 227
Query: 330 PMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK 389
PMNCP HI IY S +YRDLP+RF EFG +R E G L+G++R R F+QDDGHIF +
Sbjct: 228 PMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLRE 287
Query: 390 SQIKNEIVVFNELVHKVYNEFGFK--KIKIKLALRPNKRIGENNIWDLAENSLREAISSS 447
Q++ EI + +V+++FGFK IK L+ RP++ IG + +W+ A N+L A+ S
Sbjct: 288 DQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQES 347
Query: 448 GVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPV 507
G+ + EGAFYGPKI++ ++DS+GR WQ TIQ+DF++P R EYI ++ +K PV
Sbjct: 348 GLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKDGIKKRPV 407
Query: 508 MLHRAIIGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFR 567
M+HRAI GS++RF+AIL+E++ G +P WL+ +QV +L I+ E EYA+KV N ++ ++ R
Sbjct: 408 MVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIR 467
Query: 568 VEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITER 608
E+D E ++ +I+ + +PYI+IVG KE E +T R
Sbjct: 468 AEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVR 508
>gnl|CDD|234582 PRK00028, infC, translation initiation factor IF-3; Reviewed.
Length = 177
Score = 256 bits (656), Expect = 5e-81
Identities = 100/169 (59%), Positives = 132/169 (78%)
Query: 615 PKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDY 674
+ RIN +I A E+RL G E LGIV+ +A LAE+ +DLVEI+P AKPPV ++MDY
Sbjct: 9 KEPRINEQIRAREVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKIMDY 68
Query: 675 GKFKYREKKKAHEVKMKQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRF 734
GKFKY +KKK E K KQKVI +KE+KFRP I+E DY KL++ RFLE+GDKVK+TLRF
Sbjct: 69 GKFKYEQKKKQKEAKKKQKVIEVKEIKFRPKIDEHDYETKLKHARRFLEKGDKVKVTLRF 128
Query: 735 RGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQMIMILSPRKKK 783
RGRE++H+++G +LER+ DLE +++EQ PK+EGRQMIM+L+P+KKK
Sbjct: 129 RGREIAHKELGMELLERVAEDLEDIAKVEQEPKMEGRQMIMVLAPKKKK 177
>gnl|CDD|223367 COG0290, InfC, Translation initiation factor 3 (IF-3) [Translation,
ribosomal structure and biogenesis].
Length = 176
Score = 246 bits (630), Expect = 3e-77
Identities = 103/174 (59%), Positives = 134/174 (77%)
Query: 610 IIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVA 669
I + + IN EI A E+RL G E LGIV++E+A LAE+ +DLVEI+P AKPPV
Sbjct: 3 RISKKKEPLINEEIRAREVRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVC 62
Query: 670 RLMDYGKFKYREKKKAHEVKMKQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVK 729
++MDYGKFKY +KKKA E K KQK I +KE+K RP I+E DY KL+N RFLE+GDKVK
Sbjct: 63 KIMDYGKFKYEQKKKAKEAKKKQKQIQVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVK 122
Query: 730 ITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQMIMILSPRKKK 783
+T+RFRGREM+HQ++G +VLER+ DLE +++E PK+EGRQMIM+L+P+KKK
Sbjct: 123 VTIRFRGREMAHQELGVKVLERVAEDLEDIAKVESEPKMEGRQMIMVLAPKKKK 176
>gnl|CDD|129272 TIGR00168, infC, translation initiation factor IF-3. infC uses
abnormal initiation codons such as AUA, AUC, and CUG
which render its expression particularly sensitive to
excess of its gene product IF-3 thereby regulating its
own expression [Protein synthesis, Translation factors].
Length = 165
Score = 198 bits (504), Expect = 3e-59
Identities = 85/165 (51%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 619 INREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYGKFK 678
IN I E+RL E LGIV+ E+A +AE+ +DLV I+P AKPPV ++MDYGK+K
Sbjct: 1 INERIRFNEVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKPPVCKIMDYGKYK 60
Query: 679 YREKKKAHEVKMKQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGRE 738
Y ++KK E K QK+I +KEVK RP I+E D KL+ IRFLE+GDKVK T+RFRGRE
Sbjct: 61 YEQEKKKKEAKKNQKIIQVKEVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVRFRGRE 120
Query: 739 MSHQDIGFRVLERIKSDLELYSQIEQFP-KIEGRQMIMILSPRKK 782
+H ++G +VL+R +D+ +++E+ P K EGR M M+L+P+KK
Sbjct: 121 STHIELGEKVLDRFYTDVADVAEVEKPPTKSEGRMMSMLLAPKKK 165
>gnl|CDD|164575 CHL00199, infC, translation initiation factor 3; Provisional.
Length = 182
Score = 151 bits (382), Expect = 4e-42
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 607 EREIIIDRPKHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKP 666
+++ D P IN I P++R+ E LGI T E+A LA + +DLV ++ + P
Sbjct: 8 SKKLSRDLPL--INERIRFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDP 65
Query: 667 PVARLMDYGKFKYREKKKAHEVKMKQKVILIKEVKFRPCINEGDYNIKLRNLIRFLEEGD 726
PV R++DYGK+K+ ++K+A E K KQ IKEVK R I E DY +++ +FL+ GD
Sbjct: 66 PVCRIIDYGKYKFTQEKRAKEAKKKQHNSSIKEVKMRYKIEEHDYKVRINQAFKFLQAGD 125
Query: 727 KVKITLRFRGREMSHQDIGFRVLERIKSDLELYSQIEQFPKIEGRQMIMILSPRK 781
KVK TL FRGRE+ H ++ +L ++ +DL ++I+Q P +GR MIMILSP+K
Sbjct: 126 KVKATLTFRGREIQHLNLAINLLNKMAADLSSIAEIQQPPSQDGRNMIMILSPKK 180
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G,
H, P, S and T). Other tRNA synthetase sub-families are
too dissimilar to be included. This domain is the core
catalytic domain of tRNA synthetases and includes
glycyl, histidyl, prolyl, seryl and threonyl tRNA
synthetases.
Length = 171
Score = 150 bits (380), Expect = 6e-42
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN-MFT-TKSENRFYALK 329
+ ++ ++R++ K GY+E+ TP + LW+ +GHW++Y + M+ L+
Sbjct: 1 LRNALENFIRELLKRYGYQEVDTPILEPKELWEGSGHWDDYFEEEMYKFKDRGGEELYLR 60
Query: 330 PMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTK 389
P G +++ + SYR+LPL+ + G C R E + G+ R R F Q D IF T
Sbjct: 61 PTAEVGITRLFKNEILSYRELPLKLYQIGPCFRYE-ARPRRGLGRVREFTQVDAEIFGTP 119
Query: 390 SQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDL 435
Q + E+ +L ++ + G ++ LA + + DL
Sbjct: 120 EQSEEELEELLKLAEEILQDLGL-PYRVVLATTGDLGGSASKEGDL 164
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 159 bits (404), Expect = 5e-41
Identities = 107/389 (27%), Positives = 186/389 (47%), Gaps = 21/389 (5%)
Query: 235 IKEAEKRD--HRKLGKQLNLFHFQEES-PGLIFWHPKGYIILQEIKKYMRKIYKYNGYKE 291
KE + H KL ++ L ++ S G + ++PKG +I ++ Y+ + G
Sbjct: 189 KKELVGGEPPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMP 248
Query: 292 IKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLP 351
++TP M DLS H + + + + KS+ + L+ C G + SY++LP
Sbjct: 249 VETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLP 308
Query: 352 LRFGEFGQC-HRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEF 410
L+ E R E G L G+ R R+F D H C ++ + F + +
Sbjct: 309 LKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK--DMEQAMEEFEKQYEMILETG 366
Query: 411 GFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSG--VTWEEFPGEGAFYGPKIEYH 468
++A+R + E N ++ + E + G V E P ++ K+E+
Sbjct: 367 EDLGRDYEVAIRFTEDFYEEN-----KDWIVELVKREGKPVLLEILPERKHYWVLKVEFA 421
Query: 469 LKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENY 528
DS+GR + T+QID R G +Y+ EN K P++LH + GS+ER I L+E
Sbjct: 422 FIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKA 481
Query: 529 SGAM--------PLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYK 580
+ P WL+P QV ++ +S+ ++YA++V + L++ RV+VD R+E + K
Sbjct: 482 AKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDDRDESLGKK 541
Query: 581 IRLHSLEKLPYIIIVGNKELCENKITERE 609
IR E +PY++++G+KE+ K+T
Sbjct: 542 IRDAGKEWIPYVVVIGDKEMESGKLTVTI 570
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA
synthetase class II core domain. This domain is the core
catalytic domain of tRNA synthetases of the subgroup
containing glycyl, histidyl, prolyl, seryl and threonyl
tRNA synthetases. It is primarily responsible for
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. These enzymes belong to class II
aminoacyl-tRNA synthetases (aaRS) based upon their
structure and the presence of three characteristic
sequence motifs in the core domain. This domain is also
found at the C-terminus of eukaryotic GCN2 protein
kinase and at the N-terminus of the ATP
phosphoribosyltransferase accessory subunit, HisZ and
the accessory subunit of mitochondrial polymerase gamma
(Pol gamma b) . Most class II tRNA synthetases are
dimers, with this subgroup consisting of mostly
homodimers. These enzymes attach a specific amino acid
to the 3' OH group of ribose of the appropriate tRNA.
Length = 235
Score = 148 bits (375), Expect = 2e-40
Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 34/262 (12%)
Query: 269 GYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRF--- 325
G + + +++++ GY+EI P + L+ K GH + Y+ M+T + + R
Sbjct: 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRD 60
Query: 326 --YALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDG 383
L+P C QI++ SYR LPLR + G C R+E SG G+MR R F Q +
Sbjct: 61 TDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEY 119
Query: 384 HIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREA 443
+F + + E + EL ++ E G +++ +A P G
Sbjct: 120 VVFGEPEEAEEERREWLELAEEIARELG-LPVRVVVADDPFFGRGGKR------------ 166
Query: 444 ISSSGVTWEEFPGEGAFYGPKIEYHLKDSI-GRSWQCGTIQIDFSMPHRLGAEYIAENNT 502
G A +E+ L + GR+ + + + H + I E+
Sbjct: 167 ------------GLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGG 214
Query: 503 RKTPVMLHRAIIGSLERFIAIL 524
+ A G ER + L
Sbjct: 215 GRAHTGCGGA--GGEERLVLAL 234
>gnl|CDD|201407 pfam00707, IF3_C, Translation initiation factor IF-3, C-terminal
domain.
Length = 87
Score = 136 bits (346), Expect = 3e-38
Identities = 44/86 (51%), Positives = 66/86 (76%)
Query: 694 VILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIK 753
V+ +KE+K RP I+E D +KL++ +FLE+GDKVK+T+RFRGRE++H ++G +L+R
Sbjct: 1 VVQVKEIKLRPKIDEHDLEVKLKHARKFLEKGDKVKVTIRFRGREIAHPELGRELLDRFA 60
Query: 754 SDLELYSQIEQFPKIEGRQMIMILSP 779
DLE + +E+ PK+EGR M MIL+P
Sbjct: 61 EDLEDIATVEKPPKMEGRNMTMILAP 86
>gnl|CDD|191228 pfam05198, IF3_N, Translation initiation factor IF-3, N-terminal
domain.
Length = 76
Score = 105 bits (265), Expect = 1e-27
Identities = 41/74 (55%), Positives = 53/74 (71%)
Query: 616 KHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYG 675
K RIN EI A E+RL E LG+V+ +A LAE++ +DLVEI+P A PPV ++MDYG
Sbjct: 3 KPRINEEIRAREVRLIDEDGEQLGVVSRAEALRLAEEKGLDLVEISPNADPPVCKIMDYG 62
Query: 676 KFKYREKKKAHEVK 689
KFKY ++KKA E K
Sbjct: 63 KFKYEQQKKAKEAK 76
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 102 bits (255), Expect = 1e-24
Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 40/250 (16%)
Query: 272 ILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPM 331
I +I++ +R+ G++E++TP + L +K GH KD + L+P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHE--PKDLLPVGAENEEDLYLRPT 58
Query: 332 NCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQ 391
PG ++++ S+ R LPLR E G RNE G+ R R F Q +G +F +
Sbjct: 59 LEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGE 113
Query: 392 IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTW 451
+E F EL+ ++ L ++ + E T
Sbjct: 114 EASE---FEELIELTE------ELLRALGIKLDIVFVEK-------------------TP 145
Query: 452 EEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEY-IAENNTRKTPVMLH 510
EF GP E + GR + G+ R Y + E + P +
Sbjct: 146 GEF--SPGGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIG 203
Query: 511 RAIIGSLERF 520
+ LER
Sbjct: 204 FGL--GLERL 211
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain.
ThrRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 91
Score = 96.4 bits (241), Expect = 4e-24
Identities = 32/72 (44%), Positives = 50/72 (69%)
Query: 538 PIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGN 597
P+QV+++ ++ E ++YAK+V L RVEVDLRNEK+ KIR L+K+PYI++VG+
Sbjct: 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGD 60
Query: 598 KELCENKITERE 609
KE+ ++ R
Sbjct: 61 KEVETGTVSVRT 72
>gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA
Synthetase) is a class II tRNA synthetase that couples
threonine to its cognate tRNA. In addition to its
catalytic and anticodon-binding domains, ThrRS has an
N-terminal TGS domain, named after the ThrRS, GTPase,
and SpoT proteins where it occurs. The TGS domain is
thought to interact with the tRNA acceptor arm along
with an adjacent N-terminal domain. The specific
function of TGS is not well understood.
Length = 61
Score = 71.4 bits (176), Expect = 1e-15
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61
I I + + +F K T LD+A IS LAK A+ K+NG LVDLS ++ D L IIT
Sbjct: 1 IKITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 500
Score = 79.6 bits (197), Expect = 2e-15
Identities = 82/392 (20%), Positives = 141/392 (35%), Gaps = 73/392 (18%)
Query: 259 SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFT 318
GL W P G +L++I+ +R+ G +E+ P ++ LWK++G WE + +F
Sbjct: 36 VKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFR 95
Query: 319 -TKSENRFYALKPMN----CPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMM 373
+R AL+P + ++ SY+DLPL+ + R+E G++
Sbjct: 96 VKDRGDRPLALRPTSEEVITD----MFRKWIRSYKDLPLKLYQIQSKFRDEKRPR-FGLL 150
Query: 374 RTRSFIQDDGHIF-CTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNI 432
R R F+ D + F + + E + Y+ F ++ + P
Sbjct: 151 RGREFLMKDAYSFHADEEDAEETY----EKMLDAYSRI-FLRLPLIFGPVP--------- 196
Query: 433 WDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRL 492
E F G Y + E + D G QI S H
Sbjct: 197 -----------------ADEGFI--GGSYSHEFEALMPDG-------GEDQIATS--HHY 228
Query: 493 GA-------EYIAENNTRKTPVMLHRAIIGSLERFIAILV----ENYSGAMPLWLAPIQV 541
GA + E+ +H G R I + +N +P +A IQV
Sbjct: 229 GANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLVLPPIVADIQV 288
Query: 542 MIL-------NISKEQIEYAKKVFNFLKSKKFRVEVDLRNEK-IAYKIRLHSLEKLPYII 593
+I+ N + + Y + V L+ RVE D R+ +K+ + ++ +I
Sbjct: 289 VIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIF 348
Query: 594 IVGNKELCENKIT-EREIIIDRPKHRINREII 624
+G K T ++PK I
Sbjct: 349 ELGTKYSEAMNATVLDRDGKEQPKTMGCYGIG 380
Score = 36.1 bits (84), Expect = 0.067
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 22/154 (14%)
Query: 489 PHR--LGAEY-------IAENNTRKTPV-MLHRAIIGSLERFIAILVENYSGAM----PL 534
H LG +Y + + + ++ P M I S R +A L+E P
Sbjct: 345 GHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVS--RLVAALLEQIHDENGIIWPK 402
Query: 535 WLAPIQVMILNISK---EQIEYAKKVFNFLKSK-KFRVEVDLRNEKIAYKIRLHSLEKLP 590
+AP V I+ ++ +Q E A+K++ L V +D R+E+ K L +P
Sbjct: 403 AIAPFDVHIVPVNTKDFKQAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIP 462
Query: 591 YIIIVGNKELCENKITEREIIIDRPKHRINREII 624
I+VG + E + K + E +
Sbjct: 463 LRIVVGKRL--AEGEVEVKCRKCGEKEAVTIEAL 494
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent families. This family includes the archaeal
enzyme, the Pro-specific domain of a human
multifunctional tRNA ligase, and the enzyme from the
spirochete Borrelia burgdorferi. The other family
includes enzymes from Escherichia coli, Bacillus
subtilis, Synechocystis PCC6803, and one of the two
prolyL-tRNA synthetases of Saccharomyces cerevisiae
[Protein synthesis, tRNA aminoacylation].
Length = 472
Score = 79.0 bits (195), Expect = 2e-15
Identities = 76/371 (20%), Positives = 143/371 (38%), Gaps = 68/371 (18%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTG-HWENYKDNMF-- 317
G W P G+ I + I+K +R I G++E+ P ++ S K H + ++ ++
Sbjct: 29 GCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWI 88
Query: 318 ---TTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMR 374
+ AL+P + ++ SY DLPL+ ++ R E+ + +R
Sbjct: 89 THGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHT-RPFLR 147
Query: 375 TRSFIQDDGH-IFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIW 433
TR F + H T + + +++ ++ + I + +P
Sbjct: 148 TREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENS--LAIPYFVGRKPE--------- 196
Query: 434 DLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLG 493
WE+F G A Y E + D GR+ Q T H LG
Sbjct: 197 -----------------WEKFAG--AEYTWAFETIMPD--GRTLQIATS-------HNLG 228
Query: 494 A--------EYIAENNTRKTPVMLHRAIIGSLERFIAILV----ENYSGAMPLWLAPIQV 541
++ ++ ++ G R I L+ + +P +APIQV
Sbjct: 229 QNFAKTFEIKFETPTGDKEYA---YQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQV 285
Query: 542 MIL------NISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIV 595
+I+ +++ +E A++V + LK FRV +D R+ + K ++ +P I V
Sbjct: 286 VIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLRIEV 345
Query: 596 GNKELCENKIT 606
G ++ +N
Sbjct: 346 GPNDIEKNIAV 356
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain. This domain
is found in histidyl, glycyl, threonyl and prolyl tRNA
synthetases it is probably the anticodon binding domain.
Length = 93
Score = 66.5 bits (163), Expect = 2e-13
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 540 QVMILNISK--EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGN 597
QV+++ + + E +YA+K+ L+ RVE+D RNE + K R L +P+ ++VG
Sbjct: 1 QVVVIPLGEKDELEDYAQKLAEELREAGIRVELDDRNESLGKKFRDADLIGIPFRLVVGE 60
Query: 598 KELCENKITERE 609
KEL +T R+
Sbjct: 61 KELENGTVTVRD 72
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 60.5 bits (148), Expect = 5e-12
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 8/50 (16%)
Query: 169 ISLYSIGSF-VDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRI 217
+ + SIG F V+LC G HV +TG++ FK++ ++G+YW LQRI
Sbjct: 1 VRVVSIGDFSVELCGGTHVPNTGEIGAFKILSVSGAYW-------GLQRI 43
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at
the C-terminus of histidyl, glycyl, threonyl and prolyl
tRNA synthetases, which are classified as a group of
class II aminoacyl-tRNA synthetases (aaRS). In aaRSs,
the anticodon binding domain is responsible for
specificity in tRNA-binding, so that the activated amino
acid is transferred to a ribose 3' OH group of the
appropriate tRNA only. This domain is also found in the
accessory subunit of mitochondrial polymerase gamma (Pol
gamma b).
Length = 94
Score = 60.1 bits (146), Expect = 3e-11
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 538 PIQVMILNISK---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIII 594
PI V I+ ++ E EYA+K+ N L + RV D R KI K R L +P+ ++
Sbjct: 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVV 60
Query: 595 VGNKELCENKITER 608
VG EL K+T +
Sbjct: 61 VGEDELENGKVTVK 74
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 57.9 bits (141), Expect = 5e-11
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 169 ISLYSIGS-FVDLCRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIY 218
+ + IG VDLC G HV +TG++ FK++ KG+ KNK LQRIY
Sbjct: 1 VRVVRIGDFDVDLCGGTHVPNTGEIGAFKIL-------KGDSKNKGLQRIY 44
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent groups. This group includes enzymes from
Escherichia coli, Bacillus subtilis, Aquifex aeolicus,
the spirochete Treponema pallidum, Synechocystis
PCC6803, and one of the two prolyL-tRNA synthetases of
Saccharomyces cerevisiae. The other group includes the
Pro-specific domain of a human multifunctional tRNA
ligase and the prolyl-tRNA synthetases from the Archaea,
the Mycoplasmas, and the spirochete Borrelia burgdorferi
[Protein synthesis, tRNA aminoacylation].
Length = 568
Score = 61.0 bits (148), Expect = 2e-09
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTK 320
GL W P G +L++++ +R+ +G E+ P + LW+++G W+ Y + K
Sbjct: 38 GLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK 97
Query: 321 -SENRFYALKPMNCPGHIQIYNSNF-HSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSF 378
+ R + L P I N SY+ LPL + R+E G+MR R F
Sbjct: 98 DRKGREFVLGP-THEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRF-GLMRGREF 155
Query: 379 IQDDGHIF 386
I D + F
Sbjct: 156 IMKDAYSF 163
Score = 42.9 bits (101), Expect = 6e-04
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 465 IEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAIL 524
++ +G +Q GT +S L A ++ EN + + + IG AI
Sbjct: 403 LKIARGIEVGHIFQLGT---KYSEA--LKATFLDENG-KNQFMTMGCYGIGVSRLVSAIA 456
Query: 525 VENYSGAMPLW---LAPIQVMIL---NISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIA 578
+++ +W +AP V+I+ +EQ + A+++++ L ++ V +D RNE+
Sbjct: 457 EQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAG 516
Query: 579 YKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRPKHRI 619
K L +P ++VG K L +N E + + K I
Sbjct: 517 VKFADSELIGIPLRVVVGKKNL-DNGEIEVKKRRNGEKQLI 556
>gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II
core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
prokaryotes and from the mitochondria of eukaryotes.
Length = 255
Score = 58.4 bits (142), Expect = 3e-09
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 259 SPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFT 318
S GL W P G +L++I+ +R+ G +EI P + LWK++G W+ Y +
Sbjct: 20 SSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLR 79
Query: 319 TK-SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRS 377
K + + L P + + + SY+ LPL + R+E G+MR R
Sbjct: 80 LKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR-PRFGLMRGRE 138
Query: 378 FIQDDGHIF 386
F+ D + F
Sbjct: 139 FLMKDAYSF 147
>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional.
Length = 387
Score = 59.1 bits (143), Expect = 3e-09
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 532 MPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPY 591
+P WL PIQV IL + K+ ++++ +V L+ + RV VD ++ + KIR E +P+
Sbjct: 268 LPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPF 327
Query: 592 IIIVGNKELCENKITER 608
+II+G +E+ + +T +
Sbjct: 328 VIIIGEREVKTSTLTVK 344
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.
Length = 477
Score = 57.5 bits (140), Expect = 2e-08
Identities = 98/432 (22%), Positives = 166/432 (38%), Gaps = 145/432 (33%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTG-HWENYKDNMFT- 318
G + P GY I + I+K + K++K G++ + P ++ SL +K H E + +
Sbjct: 35 GCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWV 94
Query: 319 TK---------------SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRN 363
T SE Y PM Y SYRDLPL + ++ R
Sbjct: 95 THGGGEKLEEKLALRPTSETIIY---PM--------YKKWIQSYRDLPLLYNQWVNVVRW 143
Query: 364 ESSGSLHGMMRTRSFI-------QDDGH-IFCTKSQIKNEIVVFNELVHKVYNEFGFKKI 415
E +TR F+ Q+ GH T+ + + E + E+ + + ++
Sbjct: 144 E--------TKTRPFLRTREFLWQE-GHTAHATEEEAEEETLEMLEIYKEFFEDY----- 189
Query: 416 KIKLAL------RPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHL 469
LA+ + WE+F G A Y IE +
Sbjct: 190 ---LAIPVIIGKKTE--------------------------WEKFAG--ADYTYTIEAMM 218
Query: 470 KDSIGRSWQCGTIQIDFSMPHRLG---AE-----YIAENNTRKTPVMLH--------RAI 513
D G++ Q GT H LG A+ + ++ + H R +
Sbjct: 219 PD--GKALQAGTS-------HYLGQNFAKAFDIKFQDKDGKLEYV---HQTSWGVSTR-L 265
Query: 514 IGSLERFIAI------LVENYSGAMPLWLAPIQVMILNI-----SKEQI-EYAKKVFNFL 561
IG+L I LV +P +APIQV+I+ I KE++ EYAK++ L
Sbjct: 266 IGAL---IMTHGDDKGLV------LPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEEL 316
Query: 562 KSKKFRVEVDLRNEK-IAYKIRLHSLEKLPYIIIVGNKELCENKITEREIIIDRP---KH 617
K RV++D R++K +K L+ +P I +G ++L N + ++ R K
Sbjct: 317 KKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVV----LVRRDTLEKE 372
Query: 618 RINREIIAPELR 629
+ + + ++
Sbjct: 373 TVPLDELVEKVP 384
>gnl|CDD|238395 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core
catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain.
Length = 264
Score = 52.8 bits (126), Expect = 2e-07
Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 8/175 (4%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDN---MF 317
G+I + P IL +I+ + K++K +G + P + S +K + +F
Sbjct: 23 GIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVF 82
Query: 318 TTKSENRF---YALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMR 374
+ +AL+P +I S++DLP + G R+E G +R
Sbjct: 83 KDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLR 141
Query: 375 TRSFIQDDGHIF-CTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIG 428
R FI DGH + E + ++ + A K G
Sbjct: 142 AREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAG 196
>gnl|CDD|238401 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class
II core catalytic domain. ProRS is a homodimer. It is
responsible for the attachment of proline to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain. This
subfamily contains the core domain of ProRS from
archaea, the cytoplasm of eukaryotes and some bacteria.
Length = 261
Score = 51.8 bits (125), Expect = 4e-07
Identities = 63/283 (22%), Positives = 108/283 (38%), Gaps = 64/283 (22%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTG-HWENYKDNMFT- 318
G + + P GY I + I+K + K K G++ + P ++ S +K H E + +
Sbjct: 23 GCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWV 82
Query: 319 ----TKSENRFYALKPMNCPGHIQIYNS---NFHSYRDLPLRFGEFGQCHRNESSGSLHG 371
+ AL+P + IY SYRDLPL+ ++ R E+ +
Sbjct: 83 THGGLEELEEPLALRPTS---ETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTR-P 138
Query: 372 MMRTRSFIQDDGH-IFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGEN 430
+RTR F+ +GH T+ + + E++ +L + Y + LA+
Sbjct: 139 FLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDL--------LAI--------- 181
Query: 431 NIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPH 490
+ WE+F GA Y IE + D GR+ Q GT H
Sbjct: 182 -----------PVVKGRKTEWEKFA--GADYTYTIEAMMPD--GRALQSGTS-------H 219
Query: 491 RLGA--------EYIAENNTRKTPVMLHRAIIGSLERFIAILV 525
LG +Y ++ ++ H+ G R I ++
Sbjct: 220 NLGQNFSKAFDIKYQDKDGQKEYV---HQTSWGISTRLIGAII 259
>gnl|CDD|217243 pfam02824, TGS, TGS domain. The TGS domain is named after ThrRS,
GTPase, and SpoT. Interestingly, TGS domain was
detected also at the amino terminus of the uridine
kinase from the spirochaete Treponema pallidum (but not
any other organism, including the related spirochaete
Borrelia burgdorferi). TGS is a small domain that
consists of ~50 amino acid residues and is predicted to
possess a predominantly beta-sheet structure. There is
no direct information on the functions of the TGS
domain, but its presence in two types of regulatory
proteins (the GTPases and guanosine polyphosphate
phosphohydrolases/synthetases) suggests a ligand (most
likely nucleotide)-binding, regulatory role.
Length = 60
Score = 44.8 bits (107), Expect = 3e-06
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 13 QFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61
+ + T D A I +L K I K+NG V L +V++ + I+T
Sbjct: 12 ELPRGSTPEDFAYAIHTDLGKKFIGAKVNGQRVGLDHVLEDGDVVEIVT 60
>gnl|CDD|238438 cd00861, ProRS_anticodon_short, ProRS Prolyl-anticodon binding
domain, short version found predominantly in bacteria.
ProRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 94
Score = 44.9 bits (107), Expect = 6e-06
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 538 PIQVMILNI---SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIII 594
P V+I+ + + Q E A+K++ L++ V +D RNE+ K L +PY I+
Sbjct: 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIV 60
Query: 595 VGNKELCENKITEREIIIDRPKHRINREI 623
VG K E + EI + + + I
Sbjct: 61 VGKKSAAEGIV---EIKVRKTGEKEEISI 86
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff [Protein synthesis, tRNA aminoacylation].
Length = 397
Score = 47.1 bits (113), Expect = 2e-05
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 514 IGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR 573
IG +ER + +L E G +P + V ++ + +E A K+ L+ RVEVDL
Sbjct: 301 IG-IERLLLLLEEL--GLLPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLG 357
Query: 574 NEKIAYKIRLHSLEKLPYIIIVGNKELCENKIT 606
K+ +++ + +I+G EL +T
Sbjct: 358 GRKLKKQLKYADKLGARFAVIIGEDELANGTVT 390
Score = 38.2 bits (90), Expect = 0.014
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 12/157 (7%)
Query: 267 PKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKT--GHWENYKDNMFT-TKSEN 323
P+ I Q I++ +R++++ G+KEI+TP L+ + + + M+T
Sbjct: 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGG 70
Query: 324 RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDG 383
R L+P + N P + G R E G R R F Q
Sbjct: 71 RSLTLRPEGTAPVARAVIENK-LLLPKPFKLYYIGPMFRYERPQK--G--RYRQFHQFGV 125
Query: 384 HIFCTKSQIKN-EIVVFNELVHKVYNEFGFKKIKIKL 419
+ + S + + EI+ L ++ G K +++
Sbjct: 126 EVIGSDSPLADAEIIA---LAAEILKALGIKDFTLEI 159
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding domain.
Length = 261
Score = 46.1 bits (110), Expect = 3e-05
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 11/152 (7%)
Query: 270 YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSE-NRFYAL 328
+ + I+ +R++++ GY+EI TP L+ + E K M+ K + R AL
Sbjct: 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSK-EMYRFKDKGGRDLAL 60
Query: 329 KPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT 388
+P + N LPL+ G R E R R F Q I +
Sbjct: 61 RPDLTAPVARAVAENL-LSLPLPLKLYYIGPVFRYERPQKG----RYREFYQVGVEIIGS 115
Query: 389 KSQIKN-EIVVFNELVHKVYNEFGFKKIKIKL 419
S + + E++ L ++ G K +IK+
Sbjct: 116 DSPLADAEVI---ALAVEILEALGLKDFQIKI 144
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 46.7 bits (111), Expect = 4e-05
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 73 HSTAHLLAYAVKNLFPDSQIAIGPVI-ENGFYYDFLYKRSFTKEDLILIEKKMIELSQKN 131
H+ HLL A++ + D G I +DF + T +++ +E ++ L KN
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVED-IVNLQIKN 515
Query: 132 ELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQE--ISLYSIGSF-VDLCRGPHVFS 188
+L +KK + S+ E +K + L E + +Y I F ++C GPHV +
Sbjct: 516 DLSVKKEVM---------SLEEAREKGAMALFGEKYEDIVKVYEIDGFSKEVCGGPHVEN 566
Query: 189 TGKLKIFKLIK 199
TG+L FK+ K
Sbjct: 567 TGELGTFKIQK 577
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 45.7 bits (109), Expect = 8e-05
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 239 EKRDHRKLGKQLNLFHFQE--ESPGLIFWHPKGYIILQEIKKYMRKIYKY-------NGY 289
E +DH +LG++L L F+ + G F+ KG + R + ++ +G+
Sbjct: 139 EPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGA-----RLERALIQFMLDLHTKHGF 193
Query: 290 KEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYR- 348
E+ P +++L TG ++++++ + + L P + + N H
Sbjct: 194 TEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPD--LYLIPTAE---VPLT--NLHRDEI 246
Query: 349 ----DLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVF 399
DLP+++ + C R+E+ G TR I+ H F K E+VV
Sbjct: 247 LDEEDLPIKYTAYSPCFRSEAGS--AG-KDTRGLIR--VHQFD-----KVELVVI 291
>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.
Length = 565
Score = 43.5 bits (104), Expect = 4e-04
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 48/152 (31%)
Query: 259 SPGLIFWHPKGYIILQEIKKYMR----KIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKD 314
+ G+ + P G +L++I+ +R KI G +E+ P + LW+++G WE Y
Sbjct: 36 ASGIYTYLPLGLRVLRKIENIVREEMNKI----GAQEVLMPALQPAELWQESGRWEEYGP 91
Query: 315 NMFTTK-SENRFYALKPMNCPGH----IQIYNSNFHSYRDLPL---------------RF 354
+ K R + L P H + + SY+ LPL RF
Sbjct: 92 ELLRLKDRHGRDFVLGPT----HEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRF 147
Query: 355 GEFGQCHRNESSGSLHGMMRTRSFIQDDGHIF 386
G+MR R FI D + F
Sbjct: 148 ----------------GLMRGREFIMKDAYSF 163
Score = 36.6 bits (86), Expect = 0.054
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 492 LGAEYIAENNTRKTPVMLHRAIIGS----LERFIAILVENYS---GAM-PLWLAPIQVMI 543
+ A + EN + +M G + R +A +E G + P +AP V I
Sbjct: 420 MNATVLDENGKAQPLIM------GCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHI 473
Query: 544 LNI---SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKEL 600
+ + +E E A+K++ L++ V +D R E+ K L +P+ I+VG++ L
Sbjct: 474 VPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADADLIGIPHRIVVGDRGL 533
Query: 601 CENKITEREIIIDRPKHRINRE 622
E + E K R E
Sbjct: 534 AEGIV---EY-----KDRRTGE 547
>gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional.
Length = 439
Score = 42.9 bits (102), Expect = 5e-04
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 2/130 (1%)
Query: 258 ESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMF 317
++ G+ W P G +L++I+ +R+ G EI P + LW+++G ++ Y M
Sbjct: 35 QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEML 94
Query: 318 TTKS-ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTR 376
K +R P N I+ S SY+DLPL R+E G+MR R
Sbjct: 95 RIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPR-FGVMRGR 153
Query: 377 SFIQDDGHIF 386
F+ D + F
Sbjct: 154 EFLMKDAYSF 163
Score = 39.5 bits (93), Expect = 0.005
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 537 APIQVMILNI---SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYII 593
AP +V I+N+ + +K++ L + V D +E+ K L LP+ I
Sbjct: 344 APFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMDLIGLPWQI 403
Query: 594 IVGNKELCENKITEREIIIDRPKHRIN--REIIAPELRLSGIKN 635
IVG K L E K+ E+ K R RE ++ E ++ +
Sbjct: 404 IVGPKGLAEGKV---EL-----KDRKTGEREELSVEAAINRLTA 439
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 42.6 bits (101), Expect = 6e-04
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 517 LERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEK 576
+ER I L E G + V ++ + ++ A K+ L++ VEVD K
Sbjct: 316 VERLILALEEE--GKEDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK 373
Query: 577 IAYKIRLHSLEKLPYIIIVGNKELCENKIT 606
+ + + + +I+G EL +T
Sbjct: 374 LKKQFKYADKLGARFAVILGEDELANGVVT 403
Score = 35.7 bits (83), Expect = 0.096
Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTP--QMLDLSLWKKTGHWENY-KDNMFTTKS 321
+ P+ + + I+ +RK+++ G+ EI+TP + +L +K+G + + M+T K
Sbjct: 13 FLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTEL-FARKSGEETDVVEKEMYTFKD 71
Query: 322 EN-RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQ 380
+ R AL+P + N PL+ FG R E R R F Q
Sbjct: 72 KGGRSLALRPELTAPVARAVAENK-LDLPKPLKLYYFGPVFRYERPQKG----RYRQFYQ 126
Query: 381 DDGHIFCTKS-QIKNEIVVFNELVHKVYNEFGFKKIKIKL 419
+ + S E++ L ++ G +++
Sbjct: 127 FGVEVIGSDSPDADAEVI---ALAVEILEALGIGGFTLEI 163
>gnl|CDD|238435 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon binding domain.
GlyRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 121
Score = 39.5 bits (93), Expect = 9e-04
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 533 PLWLAPIQVMILNISKEQ--IEYAKKVFNFLKSKKFRVEVD 571
P LAPI+V +L + K +E AK++ L+ F V+ D
Sbjct: 21 PPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD 61
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 42.2 bits (100), Expect = 0.001
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 35/146 (23%)
Query: 69 NIIRHSTA-HLLAYAVKNLFPDSQIAIGP-VIENGFY-------YDFLYKRSFTKEDLIL 119
++R+ TA HLL A++ + +G V + G +DF + ++ T E+L
Sbjct: 562 RLMRNHTATHLLHAALRKV-------LGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKE 614
Query: 120 IEKKMIELSQKNELFLKKNITRDKA-----IAYFDSVNEQFKKKIINLIPNNQEISLYSI 174
IE+ + E+ ++N + + D+A +A F E++ E+ + I
Sbjct: 615 IERLVNEIIRENLPVKTEEMDLDEAKAKGAMALF---GEKYGD----------EVRVVEI 661
Query: 175 GSF-VDLCRGPHVFSTGKLKIFKLIK 199
G F V+LC G HV +TG + +FK+I
Sbjct: 662 GDFSVELCGGTHVSNTGDIGLFKIIS 687
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
Length = 502
Score = 41.1 bits (96), Expect = 0.002
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 34/167 (20%)
Query: 241 RDHRKLGKQLNLFHFQE--ESPGLIFWHPKGYIILQE-------IKKYMRKIYKYNGYKE 291
+DH +LGK+L+LF F E G F++ K +L E + + M+K G+
Sbjct: 200 KDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKK-----GFTP 254
Query: 292 IKTPQMLDLSLWKKTGHWENYKDNMFTTKSEN-RFYALKPMN-C-PGHIQIYNSNFH--- 345
+ TP+++ S+ +K G F + +N + Y++ + C G +I H
Sbjct: 255 LTTPEIVRSSVVEKCG---------FQPRGDNTQVYSIDGSDQCLIGTAEIPVGGIHMDS 305
Query: 346 --SYRDLPLRFGEFGQCHRNESSG---SLHGMMRTRSFIQDDGHIFC 387
LPL++ F C R E+ + G+ R F + + + C
Sbjct: 306 ILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVIC 352
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 39.7 bits (93), Expect = 0.005
Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 226 KDQEIYLHMIKEAEKR-------DHRKLGKQLNLFHFQEES--PGLIFWHPKGYI--ILQ 274
KD+E L + + H +LG++L F G F++ K + +
Sbjct: 118 KDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLER 177
Query: 275 EIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCP 334
+ +M + + NGY+EI P +++ TG +++++F + + L P
Sbjct: 178 ALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLEDTD--LYLIPT--- 232
Query: 335 GHIQIYNSNFH-----SYRDLPLRFGEFGQCHRNE 364
+ + +N H +LP+++ C R+E
Sbjct: 233 AEVPL--TNLHRNEILEEEELPIKYTAHSPCFRSE 265
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 38.5 bits (90), Expect = 0.008
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 19/150 (12%)
Query: 72 RHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQKN 131
H+ HLL+ AV + + E+ DF T++++ +E EL ++N
Sbjct: 98 MHTALHLLS-AVLYKVYGALTTGFEIGEDYARIDFD--GEDTEDEIEEVEALANELVKEN 154
Query: 132 ELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNN--QEISLYSIGSF-VDLCRGPHVFS 188
+ I R++A K+ N +P + +I + IG V C G HV +
Sbjct: 155 LPVIIYFIPREEAEKLPG------LVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKN 208
Query: 189 TGKLKIFKLIKLAGSYWKGNQKNKKLQRIY 218
TG++ K++K +K K +R+Y
Sbjct: 209 TGEIGEIKILKT-------EKKGKGNRRVY 231
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain.
HisRS belongs to class II aminoacyl-tRNA synthetases
(aaRS). This alignment contains the anticodon binding
domain, which is responsible for specificity in
tRNA-binding, so that the activated amino acid is
transferred to a ribose 3' OH group of the appropriate
tRNA only.
Length = 91
Score = 36.0 bits (84), Expect = 0.008
Identities = 11/69 (15%), Positives = 29/69 (42%)
Query: 538 PIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGN 597
+ V ++ + + + A ++ L+ + E+D K+ + + + +I+G
Sbjct: 1 EVDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGE 60
Query: 598 KELCENKIT 606
EL +T
Sbjct: 61 DELAAGVVT 69
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 39.0 bits (92), Expect = 0.008
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 514 IGSLERFIAILVENYSGAMPLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLR 573
IG +ER + +L E L P+ V ++ + ++ A K+ L++ RVE+D
Sbjct: 302 IG-VERLLLLLEE-------LGEEPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYG 353
Query: 574 NEKIA----YKIRLHSLEKLPYIIIVGNKELCENKIT 606
K+ Y + + +++I+G EL +T
Sbjct: 354 GRKLKKQFKYADKSGA----RFVLILGEDELANGTVT 386
>gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and
SpoT/RelA proteins where it occurs, is structurally
similar to ubiquitin. TGS is a small domain of about 50
amino acid residues with a predominantly beta-sheet
structure. There is no direct information on the
function of the TGS domain, but its presence in two
types of regulatory proteins (the GTPases and guanosine
polyphosphate phosphohydrolases/synthetases) suggests a
ligand (most likely nucleotide)-binding, regulatory
role.
Length = 60
Score = 35.0 bits (81), Expect = 0.010
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 TVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61
T +D A I +L K I +NG LVDLSY + + I+T
Sbjct: 18 TAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 38.3 bits (89), Expect = 0.013
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 276 IKKYMRKIYKY---NGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMN 332
+ K R I K+ G+ EIK+P ++ ++ G + + + + + F L+PM
Sbjct: 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNF-CLRPML 264
Query: 333 CPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLH 370
PG Y P++ E G C+R ES G H
Sbjct: 265 APGLYN-YLRKLDRILPDPIKIFEIGPCYRKESDGKEH 301
>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core
catalytic domain. SerRS is responsible for the
attachment of serine to the 3' OH group of ribose of the
appropriate tRNA. This domain It is primarily
responsible for ATP-dependent formation of the enzyme
bound aminoacyl-adenylate. Class II assignment is based
upon its structure and the presence of three
characteristic sequence motifs in the core domain. SerRS
synthetase is a homodimer.
Length = 297
Score = 37.2 bits (87), Expect = 0.024
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 239 EKRDHRKLGKQLNLFHFQEES--PGLIFWHPKGYIILQE--IKKYMRKIYKYNGYKEIKT 294
+ +DH +LG++L++ F+ + G F++ KG L E + + G+ +
Sbjct: 17 KPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIP 76
Query: 295 PQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHS-----YRD 349
P ++ + + TG + + ++ + E+ + L + + + H +
Sbjct: 77 PFLVRKEVMEGTGQLPKFDEQLYKVEGEDLY--LIAT---AEVPL--AALHRDEILEEEE 129
Query: 350 LPLRFGEFGQCHRNESSGSLHG 371
LPL++ + C R E +GS G
Sbjct: 130 LPLKYAGYSPCFRKE-AGS-AG 149
>gnl|CDD|223500 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [Translation,
ribosomal structure and biogenesis].
Length = 558
Score = 36.6 bits (85), Expect = 0.046
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 533 PLWLAPIQVMILNISK--EQIEYAKKVFNFLKSKKFRVEVD 571
P LAPI+V +L + K E +E AK++F L+ F V+ D
Sbjct: 452 PPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYD 492
>gnl|CDD|238439 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding
domain, long version found predominantly in eukaryotes
and archaea. ProRS belongs to class II aminoacyl-tRNA
synthetases (aaRS). This alignment contains the
anticodon binding domain, which is responsible for
specificity in tRNA-binding, so that the activated amino
acid is transferred to a ribose 3' OH group of the
appropriate tRNA only, and an additional C-terminal
zinc-binding domain specific to this subfamily of aaRSs.
Length = 202
Score = 35.7 bits (83), Expect = 0.048
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 532 MPLWLAPIQVMILNI-----SKEQI-EYAKKVFNFLKSKKFRVEVDLRNEKIA-YKIRLH 584
+P +APIQV+I+ I +E++ E A ++ LK+ RV VD R+ +K
Sbjct: 4 LPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDW 63
Query: 585 SLEKLPYIIIVGNKELCENKIT 606
L+ +P I +G ++L +N +
Sbjct: 64 ELKGVPLRIEIGPRDLEKNTVV 85
>gnl|CDD|188213 TIGR02367, PylS_Cterm, pyrrolysyl-tRNA synthetase, C-terminal
region. PylS is the enzyme responsible for charging the
pyrrolysine tRNA, PylT, by ligating a free molecule of
pyrrolysine. Pyrrolysine is encoded at an in-frame UAG
(amber) at least in several corrinoid-dependent
methyltransferases of the archaeal genera Methanosarcina
and Methanococcoides, such as trimethylamine
methyltransferase. This protein occurs as a fusion
protein in Methanosarcina but as split genes in
Desulfitobacterium hafniense and other bacteria [Protein
synthesis, tRNA aminoacylation].
Length = 242
Score = 35.5 bits (82), Expect = 0.064
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 273 LQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMN 332
L ++++ + K G+ ++KTP ++ +K E++ + L+PM
Sbjct: 28 LGKLERELAKALVDRGFVQVKTPIIIPKEYLEKMTIDEDHPLFSQVFWVDENK-CLRPML 86
Query: 333 CPGHIQIYNSNFHSY-RDL------PLRFGEFGQCHRNESSGSLH 370
P N ++Y R L P+R E G C+R ES GS H
Sbjct: 87 AP--------NLYNYLRKLDRLWPKPIRIFEIGPCYRKESQGSQH 123
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 36.2 bits (84), Expect = 0.079
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 21/143 (14%)
Query: 68 LNIIRHSTA-HLLAYAVKN-LFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMI 125
L I+R+ +A HLL A++ L A V +DF + R+ T+E+L IE +
Sbjct: 554 LRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVN 613
Query: 126 ELSQKN----ELFLKKNITRDK-AIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSF-VD 179
E N +F+ + + K A A F E++ +K+ + S+G V+
Sbjct: 614 EQILANIPIKVIFMDLDEAKAKGAFALF---GEKYGEKV----------RVVSVGDVSVE 660
Query: 180 LCRGPHVFSTGKLKIFKLIKLAG 202
LC G HV +TG++ +FK++K +G
Sbjct: 661 LCGGTHVRNTGEIGLFKIVKESG 683
>gnl|CDD|225403 COG2847, COG2847, Copper(I)-binding protein [Inorganic ion
transport and metabolism].
Length = 151
Score = 33.9 bits (78), Expect = 0.14
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 686 HEVKMKQKV--------ILI---KEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRF 734
HE V I+I V+ +P G Y++ L L + L+EGDKV +TL+F
Sbjct: 73 HETIHDGGVMKMRKVPGIVIPAGGTVELKP----GGYHVMLMGLKKPLKEGDKVPVTLKF 128
Query: 735 R 735
Sbjct: 129 E 129
>gnl|CDD|190941 pfam04314, DUF461, Protein of unknown function (DUF461). Putative
membrane or periplasmic protein.
Length = 110
Score = 32.1 bits (74), Expect = 0.24
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 686 HEVKMK------QKV--ILI---KEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRF 734
H M+ + V I I V+ +P G Y++ L L + L+EGD V +TL F
Sbjct: 46 HTTVMEDGVMKMRPVEGITIPAGGTVELKP----GGYHLMLMGLKQPLKEGDTVPLTLTF 101
Query: 735 -RGREMS 740
G ++
Sbjct: 102 EDGGTIT 108
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases [Protein
synthesis, tRNA aminoacylation].
Length = 551
Score = 32.9 bits (75), Expect = 0.64
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 261 GLIFWHPKGYIILQEIKKYMRKIYKYN-GYKEIKTPQMLDLSLWKKTGHWENYKDNMFTT 319
G + P G ++ IK RK + N EI TP + + K +GH +N+ D M
Sbjct: 28 GFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVDC 87
Query: 320 KSENRFY 326
KS +
Sbjct: 88 KSCKERF 94
Score = 29.4 bits (66), Expect = 8.4
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 532 MPLWLAPIQVMILNISK--EQIEYAKKVFNFLKSKKFRVEVD 571
+P LAPI+V +L + E E AK++F L+ R++ D
Sbjct: 451 LPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYD 492
>gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein,
also referred to as ppGpp hydrolase/synthetase, is a
ribosome-associated protein that is activated during
amino acid starvation and thought to mediate the
stringent response. RelA contains a TGS domain, named
after the Threonyl-tRNA Synthetase, GTPase, and SpoT
proteins where it occurs. The function of the TGS
domain is unknown.
Length = 60
Score = 29.8 bits (68), Expect = 0.71
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 19 TVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIIIT 61
TVLD A I + + K+NG LV LS V+ + IIT
Sbjct: 18 TVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.
Length = 456
Score = 32.4 bits (75), Expect = 0.97
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 535 WLAPIQVMILNISK--EQIEYAKKVFNFLKSKKFRVEVD 571
LAP++V +L + K + E A++++ L+ K F V+ D
Sbjct: 360 ALAPVKVAVLPLVKKEKLSEKAREIYAELR-KDFNVDYD 397
>gnl|CDD|225601 COG3059, COG3059, Predicted membrane protein [Function unknown].
Length = 182
Score = 29.8 bits (67), Expect = 3.9
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 53 HDVNLIIITEKDNIGLNIIRHSTAHLLAY-AVKNLFPDSQIAIGPVIENGFYYDFLYKRS 111
L ++T ++G+ +IR S + + P I P + N F+Y+
Sbjct: 2 MKKYLHLLTRGQHLGITLIRLSIFIVFIWIGGLKFVPYEADGIAPFVANSPLMSFMYEH- 60
Query: 112 FTKEDLILIEKKMIELSQKNELFLKKNIT 140
ED + + E + +N + +N T
Sbjct: 61 --PEDEQYMTHEG-EYNPENREWHSENNT 86
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional.
Length = 423
Score = 30.1 bits (68), Expect = 4.8
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 561 LKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKELCENKITER 608
+ +VE++L K+ + + E +PY++I+G +E+ + R
Sbjct: 360 RSTTGLKVELELAGRKLKKALNYANKENIPYVLIIGEEEVSTGTVMLR 407
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 30.1 bits (69), Expect = 5.7
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 173 SIGSF-VDLCRGPHVFSTGKLKIFKLIKLAG 202
SIG F ++LC G HV +TG + +FK++ +G
Sbjct: 646 SIGDFSIELCGGTHVSNTGDIGLFKIVSESG 676
>gnl|CDD|234876 PRK00960, PRK00960, seryl-tRNA synthetase; Provisional.
Length = 517
Score = 30.0 bits (68), Expect = 5.9
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 39/139 (28%)
Query: 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGH--------------------WE 310
++++E+ ++ + G+ E P+++ L + K + +E
Sbjct: 232 LVIEEV---LKPL----GFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFE 284
Query: 311 NYKDNMFTTKS----------ENRFYALKPMNCPGHIQIYNSNFHSYRDLPLR-FGEFGQ 359
+ D M K + Y L P C Q + +LP++ F G
Sbjct: 285 EFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGW 344
Query: 360 CHRNESSGSLHGMMRTRSF 378
+R E G+ HG+ R F
Sbjct: 345 TYRWEGGGA-HGLERVNEF 362
>gnl|CDD|152000 pfam11564, BpuJI_N, Restriction endonuclease BpuJI - N terminal.
BpuJI is a restriction endonuclease which recognises the
asymmetric sequence 5'-CCCGT and cuts at multiple sites
in the surrounding area of the target sequence. This
family of proteins is the N terminal domain of BpuJI
which has DNA recognition functions. The recognition
domain has two subdomains D1 and D2. The recognition of
the target sequence occurs through major groove contacts
of amino acids on the helix-turn-helix region and the
N-terminal arm.
Length = 294
Score = 29.2 bits (65), Expect = 8.9
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 361 HRNESSGSLHGMM-----------RTRSFIQDDGHI-----FCTKSQIKNEIVVFNELVH 404
HR E +G L GM R + I+D I FC K + +E++
Sbjct: 70 HRTEIAGKLFGMFIEDDEFIFPGGRAKELIEDQDLIAFFKDFCFKFEFPGGHDKDDEIIE 129
Query: 405 KVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSS 447
K FK L L + L+++ + I +
Sbjct: 130 KCGAGIQFKPAPYILELFLEASQADEKNIQLSDDDIAHCIFND 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.407
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,087,161
Number of extensions: 4275728
Number of successful extensions: 4203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4123
Number of HSP's successfully gapped: 116
Length of query: 783
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 678
Effective length of database: 6,280,432
Effective search space: 4258132896
Effective search space used: 4258132896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (27.7 bits)