RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9574
(783 letters)
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 319 bits (819), Expect = e-104
Identities = 170/290 (58%), Positives = 220/290 (75%)
Query: 241 RDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
RDHRK+GKQL+L+H QEE+PG++FWH G+ I +E++ ++R K Y+E+K P M+D
Sbjct: 1 RDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60
Query: 301 SLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQC 360
LW+KTGHW+NYKD MFTT SENR Y +KPMNCPGH+QI+N SYRDLPLR EFG C
Sbjct: 61 VLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSC 120
Query: 361 HRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLA 420
HRNE SGSLHG+MR R F QDD HIFCT+ QI++E+ LV+ +Y+ FGF+KI +KL+
Sbjct: 121 HRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLS 180
Query: 421 LRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCG 480
RP KRIG + +WD AE L A+ + + +E GEGAFYGPKIE+ L D + R+WQCG
Sbjct: 181 TRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCG 240
Query: 481 TIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYSG 530
T+Q+DFS+P RL A Y+ E+N RK PVM+HRAI+GS+ERFI IL E ++G
Sbjct: 241 TVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG 290
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 266 bits (682), Expect = 5e-84
Identities = 110/290 (37%), Positives = 170/290 (58%), Gaps = 7/290 (2%)
Query: 242 DHRKLGKQLNLFHF-QEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDL 300
DHRK+GK+L LF Q GL W P G I +EI++Y+ GY + TP + ++
Sbjct: 1 DHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANV 60
Query: 301 SLWKKTGHWENYKDNMFTTKSEN--RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFG 358
L+K +GHW++Y+++MF + L+PMNCP H+ IY + HSYR+LP+R E G
Sbjct: 61 DLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELG 120
Query: 359 QCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIK 418
HR E+SG++ G+ R R +D HIF QIK E ++ VY +FGF+ +
Sbjct: 121 TMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR 180
Query: 419 LALR----PNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIG 474
L+ R K ++++W+ AEN L+EA G+++EE GE AFYGPK++ +K ++G
Sbjct: 181 LSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMG 240
Query: 475 RSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAIL 524
+ T Q+DF +P R YI ++ PV++HR ++ ++ERF+A L
Sbjct: 241 KEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFL 290
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 163 bits (413), Expect = 4e-47
Identities = 80/181 (44%), Positives = 123/181 (67%), Gaps = 2/181 (1%)
Query: 61 TEKDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILI 120
T L ++RHSTAHL+A+A+K L+ + + +GPVIE GFYYDF ++ + +D I
Sbjct: 1 TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQNISSDDFEQI 60
Query: 121 EKKMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDL 180
EK M ++ +N +K ++RD+A F N+++K ++I+ IP ++ ++LYS G F DL
Sbjct: 61 EKTMKQIVNENMKIERKVVSRDEAKELFS--NDEYKLELIDAIPEDENVTLYSQGDFTDL 118
Query: 181 CRGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWSTKKDQEIYLHMIKEAEK 240
CRG HV ST K+K FKL+ AG+YW+G+ NK LQRIYGTA+ KK+ + +L M++E ++
Sbjct: 119 CRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEERKE 178
Query: 241 R 241
R
Sbjct: 179 R 179
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 153 bits (387), Expect = 9e-44
Identities = 78/162 (48%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Query: 63 KDNIGLNIIRHSTAHLLAYAVKNLFPDSQIAIGPVIENGFYYDFLYKRSFTKEDLILIEK 122
KD GL IIRHS AHLL +A+K L+P +++AIGPVI+NGFYYD R+ T+ED+ +EK
Sbjct: 1 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEK 60
Query: 123 KMIELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKI-INLIPNNQEISLYSIGSFVDLC 181
+M EL++KN +KK ++ +A F + E +K I I ++ + LY +VD+C
Sbjct: 61 RMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMC 120
Query: 182 RGPHVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIYGTAWS 223
RGPHV + FKL+K AG+YW+G+ NK LQRIYGTAW+
Sbjct: 121 RGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 162
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 147 bits (371), Expect = 3e-40
Identities = 33/292 (11%), Positives = 86/292 (29%), Gaps = 44/292 (15%)
Query: 246 LGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK 305
+ ++ ++ + G + P G+ I + + +R + +G+ E P ++ L K
Sbjct: 11 ILEKAEIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAK 70
Query: 306 TGHWENYKDNMF------TTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQ 359
++ + AL+P + + + DLP++ +
Sbjct: 71 EAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVN 130
Query: 360 CHRNESSGSLHGMMRTRSFIQDDGHI-FCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIK 418
R E+ + + + H TK + +N++ + K ++ G + K
Sbjct: 131 TFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISK 190
Query: 419 LALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQ 478
+ + + GR+ Q
Sbjct: 191 R---------------------------------PEWDKFPGAEYTMAFDTIFPDGRTMQ 217
Query: 479 CGTI-QIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYS 529
T+ + + + + ++ G +R IA ++ +
Sbjct: 218 IATVHNLGQNFSKTFEIIFETPTGDKDYA---YQTCYGISDRVIASIIAIHG 266
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 140 bits (354), Expect = 9e-38
Identities = 32/319 (10%), Positives = 71/319 (22%), Gaps = 58/319 (18%)
Query: 235 IKEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKT 294
+ + +R H G L S + P G + + + +++
Sbjct: 3 LVDLCRRRHFLSGTPQQLSTAALLSGCHARFGPLGVELRKNLASQWWSSMVV-FREQVFA 61
Query: 295 PQMLDLSLWKKTGHWENYKDN--------------------MFTTKSENRFYALKPMNCP 334
L ++ F L+
Sbjct: 62 VDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLH 121
Query: 335 GHIQIYNSNFHS-YRDLPLRFGEFGQCHRNESSG--SLHGMMRTRSFIQDDGHIFCTKSQ 391
G ++ Y + R LP + G C S+ + + R + F
Sbjct: 122 GALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRT 181
Query: 392 IKNEIVVFNELVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTW 451
+ + + +F A +G W
Sbjct: 182 SSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQ-DELGRKGSKLYYSFP-----------W 229
Query: 452 EEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIA-ENNTRKTPVMLH 510
+ P E W G ++ + + P +L
Sbjct: 230 GKEPIETL-----------------WNLGDQEL-LHTYPGNVSTIQGRDGRKNVVPCVLS 271
Query: 511 RAIIGSLER-FIAILVENY 528
+ ++ +A L +++
Sbjct: 272 VSG--DVDLGTLAYLYDSF 288
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 141 bits (355), Expect = 2e-37
Identities = 36/295 (12%), Positives = 79/295 (26%), Gaps = 38/295 (12%)
Query: 261 GLIFWHPKGYIILQEIKKYMRK--IYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMF- 317
G+ + P G + +K+ + +Y+ + + + + + +GH + D M
Sbjct: 30 GVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD 89
Query: 318 -----------------------TTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRF 354
Y + N + R L
Sbjct: 90 NAKARYWTPPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGI 149
Query: 355 GEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKK 414
+ G+ RNE + + + R R F Q + F + + + E K + E G +
Sbjct: 150 AQIGKAFRNEITP-RNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSR 208
Query: 415 IKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIG 474
+ + A + EG +
Sbjct: 209 ENL--------VPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQ 260
Query: 475 RSWQCGTIQIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFI-AILVENY 528
+ + + A E P ++ + ++R + A+L E +
Sbjct: 261 EALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSA--GVDRGVLALLAEAF 313
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 136 bits (342), Expect = 3e-36
Identities = 52/310 (16%), Positives = 102/310 (32%), Gaps = 58/310 (18%)
Query: 229 EIYLHMIKEAEKRDHRKLGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNG 288
E YL +I++AE D+ + G I P GY I + I++ + +++K G
Sbjct: 12 EWYLEVIQKAELADYGPV-------------RGTIVVRPYGYAIWENIQQVLDRMFKETG 58
Query: 289 YKEIKTPQMLDLSLWKKTG-HWENYKDNMFTTKSE-----NRFYALKPMNCPGHIQIYNS 342
++ P + +S +K H E + + A++P + +++
Sbjct: 59 HQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 118
Query: 343 NFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIF-CTKSQIKNEIVVFNE 401
S+RDLP ++G R E +RT F+ +GH T+ + + E+
Sbjct: 119 WIRSWRDLPQLLNQWGNVVRWEMRT--RPFLRTSEFLWQEGHTAHATREEAEEEVRRMLS 176
Query: 402 LVHKVYNEFGFKKIKIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFY 461
+ ++ E+ + L K G
Sbjct: 177 IYARLAREYAAIPVIEGLKTEKEKFAGAVYTTT--------------------------- 209
Query: 462 GPKIEYHLKDSIGRSWQCGTIQI-DFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERF 520
G++ Q GT + ++ + K +H G RF
Sbjct: 210 -----IEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVK---YVHTTSWGLSWRF 261
Query: 521 IAILVENYSG 530
I ++ +
Sbjct: 262 IGAIIMTHGD 271
>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 91
Score = 125 bits (315), Expect = 8e-35
Identities = 62/91 (68%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Query: 694 VILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIK 753
VI +KE+KFRP +EGDY +KLR+LIRFLEEGDK KITLRFRGREM+HQ IG VL R+K
Sbjct: 1 VIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVK 60
Query: 754 SDLELYSQIEQFP-KIEGRQMIMILSPRKKK 783
DL+ + +E FP KIEGRQMIM+L+P+KK+
Sbjct: 61 DDLQELAVVESFPTKIEGRQMIMVLAPKKKQ 91
>gi|218296413|ref|ZP_03497156.1|(69-154:157) translation initiation
factor IF-3 [Thermus aquaticus Y51MC23]
gi|218243207|gb|EED09738.1| translation initiation
factor IF-3 [Thermus aquaticus Y51MC23] E=2e-35
s/c=1.74 id=82% cov=101%
Length = 86
Score = 120 bits (304), Expect = 2e-33
Identities = 43/85 (50%), Positives = 62/85 (72%)
Query: 697 IKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKSDL 756
+K +KFR I++ DY KL ++ RFLEEG KVK+T+ FRGREMS+ ++G R+LER+ DL
Sbjct: 2 VKSIKFRVKIDDHDYQTKLNHIKRFLEEGHKVKVTIMFRGREMSYPELGQRLLERVAKDL 61
Query: 757 ELYSQIEQFPKIEGRQMIMILSPRK 781
E + +E P++ GR M M+L+P K
Sbjct: 62 EGLAVVEMKPELLGRDMNMLLAPAK 86
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 126 bits (317), Expect = 4e-33
Identities = 42/292 (14%), Positives = 100/292 (34%), Gaps = 45/292 (15%)
Query: 246 LGKQLNLFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK 305
+ ++ + + G+ W P G++I + K +R+I + + + + + L K+
Sbjct: 9 ILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHEEVLFPLLVPEDELAKE 68
Query: 306 TGHWENYKDNMFTTKSE-----NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQC 360
H + ++D ++ R AL+P + ++ S+ DLP+RF +
Sbjct: 69 AIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNT 128
Query: 361 HRNESSGSLHGMMRTRSF--IQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIK 418
R E + ++R R ++ I T S+ + ++ E+ + +N G + +
Sbjct: 129 FRYE-TKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITR 187
Query: 419 LALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQ 478
E + G++ Q
Sbjct: 188 RPPWDKFPGSEYTVAF---------------------------------DTLMPDGKTLQ 214
Query: 479 CGTI-QIDFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENYS 529
GT+ + + ++ + +H+ G +R IA ++ +
Sbjct: 215 IGTVHNLGQTFARTFEIKFETPEGDHE---YVHQTCYGLSDRVIASVIAIHG 263
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 88
Score = 119 bits (300), Expect = 7e-33
Identities = 41/87 (47%), Positives = 62/87 (71%)
Query: 695 ILIKEVKFRPCINEGDYNIKLRNLIRFLEEGDKVKITLRFRGREMSHQDIGFRVLERIKS 754
I +KEV+ P I E D+N KLRN +FLE+GDKVK T+RF+GR ++H++IG RVL+R+
Sbjct: 1 INVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSE 60
Query: 755 DLELYSQIEQFPKIEGRQMIMILSPRK 781
+ +E PK++GR M ++L+P+
Sbjct: 61 ACADIAVVETAPKMDGRNMFLVLAPKN 87
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 76
Score = 90.9 bits (226), Expect = 6e-23
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 616 KHRINREIIAPELRLSGIKNEPLGIVTLEKAFYLAEKENVDLVEIAPFAKPPVARLMDYG 675
IN +I A E+RL + LGI + ++A +A + N+DLV +AP AKPPV R+MDYG
Sbjct: 2 DFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG 61
Query: 676 KFKYREKKKAHEVK 689
KF++ ++KK E +
Sbjct: 62 KFRFEQQKKEKEAR 75
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 79.0 bits (194), Expect = 1e-16
Identities = 37/294 (12%), Positives = 73/294 (24%), Gaps = 34/294 (11%)
Query: 239 EKRDHRKLGKQLNLFHFQEES---PGLIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTP 295
DH L ++ + + + + ++ G+ + P
Sbjct: 22 PPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLP 81
Query: 296 QMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFG 355
+ TGH+ Y+D ++ + L +++ Y LPLR+
Sbjct: 82 SYAREKAFLGTGHFPAYRDQVWAIAETD--LYLTGTAEVVLNALHSGEILPYEALPLRYA 139
Query: 356 EFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKI 415
+ R S G H F K + E + + E
Sbjct: 140 GYAPAFR-----SEAGSFGKDVRGLMRVHQF-HKVEQYVLTEASLEASDRAFQELLE--- 190
Query: 416 KIKLALRPNKRIGENNIWDLAENSLREAISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGR 475
E + L + S GR
Sbjct: 191 -----------NAEEILRLLELPYRLV-------EVATGDMGPGKWRQVDIEVYLPSEGR 232
Query: 476 SWQCGTIQI-DFSMPHRLGAEYIAENNTRKTPVMLHRAIIGSLERFIAILVENY 528
+ + R Y + L+ + + R +A+L+EN+
Sbjct: 233 YRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALAT-PRILAMLLENH 285
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 73.0 bits (178), Expect = 9e-16
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 13/154 (8%)
Query: 68 LNIIRHSTAHLLAYAVKNLFPD--SQIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMI 125
+ + HS H++ AV + V N + R + E++ IE+
Sbjct: 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLAN 63
Query: 126 ELSQKNELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIG-SFVDLCRGP 184
E ++N + R++A F + + + + + + I V+ C
Sbjct: 64 EKVKENAPIKIYELPREEAEKMFGED----MYDLFPVPEDVRILKVVVIEDWNVNACNKE 119
Query: 185 HVFSTGKLKIFKLIKLAGSYWKGNQKNKKLQRIY 218
H +TG++ K+ K+ KG I+
Sbjct: 120 HTKTTGEIGPIKIRKVRFRKSKGL------LEIH 147
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 110
Score = 66.6 bits (162), Expect = 4e-14
Identities = 35/77 (45%), Positives = 53/77 (68%)
Query: 533 PLWLAPIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYI 592
P WLAP+QV+I+NI+ Q EY ++ L + RV+ DLRNEKI +KIR H+L ++PY+
Sbjct: 2 PTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYM 61
Query: 593 IIVGNKELCENKITERE 609
++ G+KE+ K+ R
Sbjct: 62 LVCGDKEVESGKVAVRT 78
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 113
Score = 65.1 bits (158), Expect = 2e-13
Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 526 ENYSGAMPLWLAPIQVMILNISKE-QIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLH 584
E GA P WLAP QV I+ ++ + +YA+++ + LKS+ RV +D RNEK+ YKIR
Sbjct: 1 EETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYKIREA 60
Query: 585 SLEKLPYIIIVGNKELCENKITERE 609
++K+PY I+VG+KE+ N++ R+
Sbjct: 61 QMQKIPYQIVVGDKEVENNQVNVRQ 85
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 111
Score = 61.6 bits (149), Expect = 3e-12
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 536 LAPIQVMILNISK---EQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYI 592
LAPI+V ++ + K E EYAK++ L + + I R H P+
Sbjct: 2 LAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGTPFA 61
Query: 593 IIVGNKELCENKITEREI 610
+ V +
Sbjct: 62 VTVDYDTI-GQSKDGTTR 78
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS),
N-terminal 'additional' domain {Escherichia coli
[TaxId: 562]}
Length = 62
Score = 58.6 bits (142), Expect = 9e-12
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 1 MISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIII 60
M I + + + + ++ +DVA I LAK I G++NG LVD +I++D L II
Sbjct: 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSII 60
Query: 61 T 61
T
Sbjct: 61 T 61
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 56.5 bits (136), Expect = 1e-10
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 539 IQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNK 598
+ + I+ + + YA K+ N L+ + + D KI +++ + I++G++
Sbjct: 5 LDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQ 64
Query: 599 ELCENKITEREIIIDRPKHRINREIIAPELR 629
EL NKI + + I + + +
Sbjct: 65 ELENNKIDVKN-MTTGESETIELDALVEYFK 94
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, C-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 127
Score = 55.4 bits (133), Expect = 7e-10
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 533 PLWLAPIQVMILNISK---EQIEYAKKVFNFLKSKKFRVEV---DLRNEKIAYKIRLHSL 586
LAPI+V + E + + + N L V + + + +
Sbjct: 7 HPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDE 66
Query: 587 EKLPYIIIVGNKELCENKITEREIIIDRPKHRINREIIAPEL--RLSGIKN 635
+ + ++V L I R K ++ + L L+ N
Sbjct: 67 MSVLFSVLVTETTLENGLIQLRS-RDTTMKEMMHISKLRDFLVKYLASASN 116
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS),
N-terminal 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 59
Score = 52.4 bits (126), Expect = 1e-09
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 2 ISIQISNELKLQFSKPITVLDVASHISVNLAKTAIVGKLNGVLVDLSYVIDHDVNLIII 60
I+IQ + K F K T D+A IS L K A+ GK NG LVDL+ ++ D ++ I+
Sbjct: 1 INIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 59
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 96
Score = 52.3 bits (125), Expect = 4e-09
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 541 VMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKEL 600
+ ++ +++E + A + L+ + R E L K A + + +G EL
Sbjct: 6 LYLIPLTEEAVAEAFYLAEALR-PRLRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDEL 64
Query: 601 CENKITEREI 610
++T + +
Sbjct: 65 RAGEVTLKRL 74
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 52.3 bits (125), Expect = 4e-09
Identities = 11/67 (16%), Positives = 27/67 (40%)
Query: 540 QVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEKLPYIIIVGNKE 599
V I + K + L+ + V V++ ++ +++ S + +I G ++
Sbjct: 5 SVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERD 64
Query: 600 LCENKIT 606
L +T
Sbjct: 65 LERGVVT 71
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 54.3 bits (129), Expect = 2e-08
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 6/124 (4%)
Query: 267 PKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENY--KDNMFTTKSEN- 323
L++I+ +RK++ Y+E+ P L+ ++ MF
Sbjct: 12 LNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEG 71
Query: 324 RFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDG 383
+ L+ +++Y+ S R+ FG+ R E + I+ G
Sbjct: 72 QSITLRYDFTLPLVRLYSQIKDST---SARYSYFGKIFRKEKRHKGRSTENYQIGIELFG 128
Query: 384 HIFC 387
Sbjct: 129 ESAD 132
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 99
Score = 45.4 bits (107), Expect = 1e-06
Identities = 4/70 (5%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
Query: 539 IQVMILNISKEQIEYAKKVFNFLKSKK--FRVEVDLRNEKIAYKIRLHSLEKLPYIIIVG 596
+ + ++ + A + L+ + ++ + + +++G
Sbjct: 4 VDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLG 63
Query: 597 NKELCENKIT 606
E+
Sbjct: 64 ESEVANGTAV 73
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 127
Score = 44.7 bits (105), Expect = 3e-06
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 532 MPLWLAPIQVMILNI-----SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSL 586
+P +A QV+I+ I ++E +E +++ + L++ FRV +D R+ + K +
Sbjct: 5 LPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEM 64
Query: 587 EKLPYIIIVGNKELCENKIT 606
+P + +G ++L +
Sbjct: 65 RGVPLRVEIGPRDLEKGAAV 84
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain
{Thermus thermophilus [TaxId: 274]}
Length = 127
Score = 44.4 bits (104), Expect = 4e-06
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 532 MPLWLAPIQVMILNISKEQ-----IEYAKKVFNFLKSKKFRVEVDLRNE-KIAYKIRLHS 585
+P LAPIQV+I+ I K++ +E A+ + L ++ RV +D R++ YK
Sbjct: 5 LPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWE 64
Query: 586 LEKLPYIIIVGNKELCENKIT 606
L+ +P+ + +G K+L +
Sbjct: 65 LKGVPFRVELGPKDLEGGQAV 85
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 43.8 bits (102), Expect = 5e-05
Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 10/159 (6%)
Query: 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKK----TGHWENYKDNMFTTK 320
P+ + I+ + ++ + YKEI+TP L+ + + + F K
Sbjct: 11 ILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK 70
Query: 321 SENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQ 380
+ + P++ G R E R R F Q
Sbjct: 71 GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYER----KQKGRYRQFNQ 126
Query: 381 DDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKL 419
+ V V +Y FG K +K+ +
Sbjct: 127 FGV-EAIGAENPSVDAEVLAM-VMHIYQSFGLKHLKLVI 163
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 126
Score = 39.3 bits (91), Expect = 3e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 532 MPLWLAPIQVMILNI-----SKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSL 586
+P +APIQV+I+ + +E AK+++ KFRV +D R+ + K +
Sbjct: 5 LPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYE-KLKGKFRVHIDDRDIRPGRKFNDWEI 63
Query: 587 EKLPYIIIVGNKELCENKIT 606
+ +P I VG K++ KIT
Sbjct: 64 KGVPLRIEVGPKDIENKKIT 83
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 39.6 bits (91), Expect = 0.001
Identities = 21/153 (13%), Positives = 41/153 (26%), Gaps = 4/153 (2%)
Query: 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTG--HWENYKDNMFTTKSE 322
+ P I Q I+ ++ + GY EI+ P + L+K+ + + M+T +
Sbjct: 11 YLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR 70
Query: 323 NRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDD 382
N + R G R+E G R + +
Sbjct: 71 NGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQ--KGRYRQFHQLGCE 128
Query: 383 GHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKI 415
I++ +
Sbjct: 129 VFGLQGPDIDAELIMLTARWWRALGISEHVTLE 161
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 39.6 bits (92), Expect = 0.001
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 3/151 (1%)
Query: 271 IILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWE-NYKDNMFTTKSENRFYALK 329
++Q + + + + P + W ++ ++D L+
Sbjct: 127 ALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLR 186
Query: 330 PMNCPGHIQIY-NSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGHIFCT 388
P G + N + R L + G+ RNE + + + R R F Q + F
Sbjct: 187 PETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEYFVR 245
Query: 389 KSQIKNEIVVFNELVHKVYNEFGFKKIKIKL 419
+ + + E K + E G + +
Sbjct: 246 PGEDEYWHRYWVEERLKWWQEMGLSRENLVP 276
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 37.4 bits (85), Expect = 0.005
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 2/123 (1%)
Query: 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENR 324
++P+ + + I K + + G++ I P + L L++ E ++ +
Sbjct: 13 FYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRI-KSGEELLQQTYSFVDKGG 71
Query: 325 FYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQDDGH 384
+ PLR+ F + R E + + G
Sbjct: 72 REVTLIPEA-TPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGS 130
Query: 385 IFC 387
Sbjct: 131 DSP 133
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 35.5 bits (81), Expect = 0.005
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 29/129 (22%)
Query: 73 HSTAHLLAYAVKNLFPDS--QIAIGPVIENGFYYDFLYKRSFTKEDLILIEKKMIELSQK 130
H+ HLL + + + + Q+ + YD Y + K ++
Sbjct: 12 HTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYK------------EQ 59
Query: 131 NELFLKKNITRDKAIAYFDSVNEQFKKKIINLIPNNQEISLYSIGSFVDLCRGPHVFSTG 190
K + + + V C G HV
Sbjct: 60 IISLFNKYVDEGGEVKIW---------------WEGDRRYTQIRDFEVIPCGGTHVKDIK 104
Query: 191 KLKIFKLIK 199
++ K +K
Sbjct: 105 EIGHIKKLK 113
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 35.7 bits (81), Expect = 0.018
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 3/123 (2%)
Query: 265 WHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWEN--YKDNMFTTKSE 322
K + Q I RK+ + G E+ TP + +++K + MFT +
Sbjct: 11 LFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR 70
Query: 323 NRFYALKPMNCP-GHIQIYNSNFHSYRDLPLRFGEFGQCHRNESSGSLHGMMRTRSFIQD 381
++ Y + P+R G R E + +
Sbjct: 71 GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEA 130
Query: 382 DGH 384
G
Sbjct: 131 LGS 133
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 31.3 bits (71), Expect = 0.16
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 537 APIQVMILNISKEQIEYAKKVFNFLKSKKFRVEVDLRNEKIAYKIRLHSLEK--LPYIII 594
P+ ++ ++K+ +YA+ V ++ V++ N +++ L + + P+ I+
Sbjct: 7 GPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIV 66
Query: 595 VGNKELCENKITEREIIIDRPK-HRINREIIAPELRLSGIKNEPL--GIVTLEKAF--YL 649
+ + T I+ P+ HR N P +V + + + Y
Sbjct: 67 ITQQHQIHRSCTVN-IMFGTPQEHR----------------NMPQADAMVLVARNYERYK 109
Query: 650 AEKENVDLVEIAPFAKPPVA 669
E + EIA A P +
Sbjct: 110 NECREKEREEIARQASGPSS 129
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 149
Score = 30.3 bits (68), Expect = 0.37
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 686 HEVKMKQKVILIKEVKFRPCINEG--------DYNIKLRNLIRFLEEGDKVKITLRFR 735
+ +K V I ++ L L R L+ G+ V ITL+
Sbjct: 75 MTTTHSGGMAGMKMVP-WLTIPARGTLTLQRDGDHVMLMGLKRPLKVGETVNITLKAT 131
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus,
ba3 type [TaxId: 274]}
Length = 122
Score = 28.1 bits (62), Expect = 1.6
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 317 FTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEF-GQCHRNESSGSLHGMMRT 375
F S + + ++++ + R R GE+ C+ + G H M
Sbjct: 59 FKITSPDVIHGFHVEGTNINVEVLPGEVSTVRYTFKRPGEYRIICN--QYCGLGHQNMFG 116
Query: 376 RSFIQD 381
+++
Sbjct: 117 TIVVKE 122
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 29.4 bits (65), Expect = 1.6
Identities = 8/86 (9%), Positives = 19/86 (22%), Gaps = 13/86 (15%)
Query: 281 RKIYKYNGYKEIKTPQMLDLSLWKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIY 340
G+ P + E N F + ++++ +
Sbjct: 13 YSKATKKGFSPFFVPALE---------KAEEPAGNFFLDRK-GNLFSIREDFTKTVLNHR 62
Query: 341 NSNFHSYRDLPLRFGEFGQCHRNESS 366
D ++ +R S
Sbjct: 63 KRY---SPDSQIKVWYADFVYRYSGS 85
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 562
Score = 29.4 bits (66), Expect = 1.8
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 311 NYKDNMFTTKSENRFYALKPMN----CPGHIQIYNSNFHSYRDLPLRF 354
+ T ++ + FY L P++ H+ + + RDL +
Sbjct: 458 APQHLDHTIQNGDYFYPL-PVHALFAGADHVANAPNFPPALRDLSRQV 504
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.9 bits (63), Expect = 2.0
Identities = 19/203 (9%), Positives = 41/203 (20%), Gaps = 21/203 (10%)
Query: 250 LNLFHFQEESPGLIFWHPKG-------YIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSL 302
+ + L+ G Y + + + + +K G+
Sbjct: 15 VASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74
Query: 303 WKKTGHWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSNFHSYRDLPLRFGEFGQCHR 362
T E K+ + L G ++ +
Sbjct: 75 DYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE 134
Query: 363 NESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIKIKLALR 422
+ R + V + E + + ALR
Sbjct: 135 PPAETWFFLATREPERLLATLR--SRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALR 192
Query: 423 PNKRIGENNIWDLAENSLREAIS 445
L+ S A++
Sbjct: 193 ------------LSAGSPGAALA 203
>d1yk3a1 d.108.1.1 (A:10-207) Hypothetical protein Rv1347c/MT1389
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 28.0 bits (61), Expect = 3.7
Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 8/124 (6%)
Query: 308 HWENYKDNMFTTKSENRFYALKPMNCPGHIQIYNSN----FHSYRDLPLRFGEFGQCHRN 363
W + + G++++Y + H Y P G
Sbjct: 68 RWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADL 127
Query: 364 ESSGSLHGMMRTRSFIQDDGHIFCTKSQIKNEIVVFNELVHKVYNEFGFKKIK-IKLALR 422
G + + +I + N ++ G K +
Sbjct: 128 SKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDT--- 184
Query: 423 PNKR 426
N+R
Sbjct: 185 TNRR 188
>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia
coli [TaxId: 562]}
Length = 309
Score = 27.9 bits (61), Expect = 4.3
Identities = 19/146 (13%), Positives = 33/146 (22%), Gaps = 21/146 (14%)
Query: 401 ELVHKVYNEFGFKKIKIKL-------------ALR---PNKRI--GENNIWDLAENSLRE 442
L Y ++GF K+K AL P RI N W L E
Sbjct: 53 RLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIG 112
Query: 443 AISSSGVTWEEFPGEGAFYGPKIEYHLKDSIGRSWQCGTIQIDFSMPHRLGAEYIAENNT 502
+ + E + + R + + +
Sbjct: 113 KYLKGSLAYAE---DPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQS 169
Query: 503 RKTPVMLHRAIIGSLERFIAILVENY 528
P+ +A + +
Sbjct: 170 VDIPLADPHFWTMQGSVRVAQMCHEF 195
>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding
protein MetN2 {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 25.9 bits (57), Expect = 7.4
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 538 PIQVMILNISKEQIEYAKKVFNFLKSKKFRVEV 570
+ ++L+I K L ++ ++EV
Sbjct: 59 TVGFLVLHIPYISSVDFGKFEKELIERQVKMEV 91
>d2cc1a1 e.3.1.1 (A:27-293) beta-Lactamase, class A {Mycobacterium
fortuitum [TaxId: 1766]}
Length = 262
Score = 27.1 bits (59), Expect = 7.4
Identities = 5/49 (10%), Positives = 13/49 (26%)
Query: 262 LIFWHPKGYIILQEIKKYMRKIYKYNGYKEIKTPQMLDLSLWKKTGHWE 310
G + + + + N ++ + KTG +
Sbjct: 162 GYRAILAGDALSPPQRGLLEDWMRANQTSSMRAGLPEGWTTADKTGSGD 210
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga
maritima [TaxId: 2336]}
Length = 127
Score = 25.9 bits (57), Expect = 9.6
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 8/64 (12%)
Query: 252 LFHFQEESPGLIFWHPKGYIILQEIKKYMRKIYKYNGYK-----EIKTPQMLDLSLWKKT 306
F + I KG+ + ++ + + EIK L +
Sbjct: 60 FFDTVND---WILEISKGWAPWRIKREGNELKVTFRKIRKKEGTEIKALTYHLLKFERDG 116
Query: 307 GHWE 310
+
Sbjct: 117 DVLK 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.407
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,062,631
Number of extensions: 158451
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 65
Length of query: 783
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 691
Effective length of database: 1,144,436
Effective search space: 790805276
Effective search space used: 790805276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)