BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9575
(786 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NEK|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 588
Score = 605 bits (1561), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/561 (54%), Positives = 396/561 (70%), Gaps = 2/561 (0%)
Query: 5 LQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQD 64
LQ++Q G A+LSKVFPTRSHTV+AQGGI+ +LGN +DNW WHM+DT+KGSDY+GDQD
Sbjct: 24 LQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQD 83
Query: 65 AIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGH 124
AIE+MCK P+ + ELEH G+PF R +G IYQRPFGG S NFG + AR A ADRTGH
Sbjct: 84 AIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGH 143
Query: 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATG 184
ALLHTLYQ+NL T F EW A+DL+ + +G ++G AL +ETG ++ +++ T+LATG
Sbjct: 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATG 203
Query: 185 GGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGI 244
G GRI+ ++TNA INTGDG+GMA RAG+P++DME WQFHPTG+AGAGVL+TEG RGEGG
Sbjct: 204 GAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGY 263
Query: 245 LINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVMLDLRHINSETI 303
L+N +GERFMERYAP KDLA RD V+R++ EI+EGRGC GP H L L H+ E +
Sbjct: 264 LLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVL 323
Query: 304 INRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNND-NNKIVNGL 362
+RLP ILE+ FA+V+ +KEPIPVIPT HY MGGIPT + GQ + N + +V GL
Sbjct: 324 ESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGL 383
Query: 363 YAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDR 422
+A+GE ACVSVHGANRLG NSLLDL+VFGR+AG H+ ++ + + ++ +DR
Sbjct: 384 FAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDR 443
Query: 423 LSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKS 482
L++ NN+ E ++ +++ MQ+ VFR M G +++ ++ ER K D S
Sbjct: 444 LNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTS 503
Query: 483 KIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNG 542
FNT R+E LELDNL+ETA AT SA R ESRGAH+ DF +RDD NWL HS++
Sbjct: 504 SEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPES 563
Query: 543 NRIEFKPVNLKPLTVKTVHPK 563
+ + VN++P PK
Sbjct: 564 ESMTRRSVNMEPKLRPAFPPK 584
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/574 (50%), Positives = 384/574 (66%), Gaps = 29/574 (5%)
Query: 7 LAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAI 66
L++ G N A ++K+FPTRSHTVAAQGGI+A+LGNM +DNW WH +DT+KGSD+LGDQDAI
Sbjct: 38 LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAI 97
Query: 67 EFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIA-RACAVADRTGHA 125
+M ++AP V ELE++GMPF R ++G IYQR FGG S FG+ A R C VADRTGH+
Sbjct: 98 HYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHS 157
Query: 126 LLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185
LLHTLY R+L T++F+E+ A+DL+ ++ G+ GV+AL +E G+I + ++ T++ATGG
Sbjct: 158 LLHTLYGRSLRYDTSYFVEYFALDLLMEN-GECRGVIALCIEDGSIHRIRARNTVVATGG 216
Query: 186 GGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGIL 245
GR + + T+A +TGDG M RAGLP +D+EF QFHPTG+ GAG LITEG RGEGGIL
Sbjct: 217 YGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGIL 276
Query: 246 INSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIIN 305
INS GERFMERYAP+ KDLA RD VSR+M EI+EGRGCGP KDHV L L H+ E +
Sbjct: 277 INSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLAV 336
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
RLP I E FA V+ KEPIPV+PT+HY MGGIPTN GQV+ N +++V GLYA
Sbjct: 337 RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQVVPGLYAC 396
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPI---NSIDIIIDR 422
GE AC SVHGANRLG NSLLDL+VFGR+ LS+ K+P N+ + +
Sbjct: 397 GEAACASVHGANRLGANSLLDLVVFGRACA---LSIAESCRPGDKVPSIKPNAGEESVMN 453
Query: 423 LSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKS 482
L KL G+ + ++K+MQ++ VFR +++ G +KI+ L +++ D+
Sbjct: 454 LDKLRFANGTIRTSELRLSMQKSMQSHAAVFRVGSVLQEGCEKILRLYGDLQHLKTFDRG 513
Query: 483 KIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDD------------- 529
++NT +E LEL NL+ A TI A +RKESRGAHA DFK R D
Sbjct: 514 MVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDFKERVDEYDYSKPIQGQQK 573
Query: 530 ----INWLKHSIWY----SNGNRIEFKPVNLKPL 555
+W KH++ Y + +E++PV K L
Sbjct: 574 KPFQEHWRKHTLSYVDVKTGKVSLEYRPVIDKTL 607
>pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|A Chain A, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|A Chain A, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|N Chain N, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|A Chain A, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|N Chain N, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|A Chain A, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|A Chain A, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|N Chain N, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 621
Score = 565 bits (1457), Expect = e-161, Method: Compositional matrix adjust.
Identities = 292/594 (49%), Positives = 387/594 (65%), Gaps = 34/594 (5%)
Query: 7 LAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAI 66
L++ G N A ++K+FPTRSHTVAAQGGI+A+LGNM DNW WH +DT+KGSD+LGDQDAI
Sbjct: 37 LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI 96
Query: 67 EFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIA-RACAVADRTGHA 125
+M ++AP V ELE++GMPF R + G IYQR FGG S FG+ A R C VADRTGH+
Sbjct: 97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHS 156
Query: 126 LLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185
LLHTLY R+L T++F+E+ A+DL+ ++ G+ GV+AL +E G I +K T++ATGG
Sbjct: 157 LLHTLYGRSLRYDTSYFVEYFALDLLMEN-GECRGVIALCIEDGTIHRFRAKNTVIATGG 215
Query: 186 GGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGIL 245
GR + + T+A +TGDG M RAGLP +D+EF QFHPTG+ GAG LITEG RGEGGIL
Sbjct: 216 YGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGIL 275
Query: 246 INSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIIN 305
INS GERFMERYAP+ KDLA RD VSR+M EI+EGRGCGP KDHV L L H+ + +
Sbjct: 276 INSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPEKDHVYLQLHHLPPQQLAT 335
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
RLP I E FA V+ KEPIPV+PT+HY MGGIPTN GQVI N +K+V GLYA
Sbjct: 336 RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVITHVNGEDKVVPGLYAC 395
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSI-----DIII 420
GE A SVHGANRLG NSLLDL+VFGR+ +L + + P+ SI + +
Sbjct: 396 GEAASASVHGANRLGANSLLDLVVFGRAC-----ALTIAETCKPGEPVPSIKPNAGEESV 450
Query: 421 DRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKD 480
L KL G+ +++KTMQ++ VFRT +++ G +K+ + ++ D
Sbjct: 451 ANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTFD 510
Query: 481 KSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDD----------- 529
+ ++NT +E LEL NL+ A TI A +RKESRGAHA D+K R D
Sbjct: 511 RGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKLRIDEFDYSKPLQGQ 570
Query: 530 ------INWLKHSIWYSNGNRIEFKPVNLK--PLTVKTVHPKKHHDIKPYMQKF 575
+W KH++ Y + ++ V LK P+ +T++ + + P ++ +
Sbjct: 571 QKRPFEEHWRKHTLSYVD---VKSGKVTLKYRPVIDRTLNEEDCSSVPPAIRSY 621
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 291/589 (49%), Positives = 378/589 (64%), Gaps = 23/589 (3%)
Query: 7 LAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAI 66
L + G A+++K+FPTRSHT AAQGGI+A+LG+M+ D+W WH +DT KGSD+LGDQ+A+
Sbjct: 60 LGEAGFKTAVVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWHFYDTAKGSDWLGDQNAM 119
Query: 67 EFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIA-RACAVADRTGHA 125
++ + A + V ELE+FGMPF R G IYQR FGG S+N+G+ +A R C VADRTGH+
Sbjct: 120 HYLTRNAVEAVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGKGGVAKRTCCVADRTGHS 179
Query: 126 LLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185
+LHTLY +L FFIE+ A+DL+ D +G +GV+AL +E G I SK TI+ATGG
Sbjct: 180 MLHTLYGNSLRCHCTFFIEYFALDLLMD-KGRCVGVIALCLEDGTIHRFRSKRTIVATGG 238
Query: 186 GGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGIL 245
GR + + T A +NTGDG +A RAG+ LED+EF QFHPTG+ G G LITEG RGEGG L
Sbjct: 239 YGRAYFSCTTAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYGVGCLITEGSRGEGGFL 298
Query: 246 INSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIIN 305
+NS GERFMERYAP KDLA RD VSRA EI EGRG GP KDH+ L L H+ +E +
Sbjct: 299 VNSEGERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEKDHIYLQLHHLPAEQLHQ 358
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVI-IPNNDNNKIVNGLYA 364
RLP I E FA V+ KEPIPVIPT+HY MGGIPTN QVI +KIV GLYA
Sbjct: 359 RLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGIPTNYKAQVIKYTKEGGDKIVPGLYA 418
Query: 365 IGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHN-KKLPINSIDIIIDRL 423
GECAC SVHGANRLG NSLLD +VFGR+ +I ELK +LP + + I L
Sbjct: 419 CGECACHSVHGANRLGANSLLDAVVFGRACSINIKE-ELKPDEKIPELPEGAGEESIANL 477
Query: 424 SKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSK 483
+ G + ++KTMQ + GVFR ++ G KK+M L + K + D+S
Sbjct: 478 DAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDILAEGVKKMMDLSKELKRLKTTDRSL 537
Query: 484 IFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDD-------------- 529
I+N+ E+LEL NL+ A TI +A +RKESRGAHA +DF R+D
Sbjct: 538 IWNSDLTESLELQNLMLNATQTIVAAENRKESRGAHARDDFPKREDEYDYSKPIEGQTKR 597
Query: 530 ---INWLKHSIWYSNGNRIEFKPVNLKPLTVKTVHPKKHHDIKPYMQKF 575
+W KH++ + R ++ +P+ KT+ P + I P ++ +
Sbjct: 598 PFEKHWRKHTLTKQD-PRTGHITLDYRPVIDKTLDPAEVDWIPPIIRSY 645
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 218/561 (38%), Positives = 327/561 (58%), Gaps = 38/561 (6%)
Query: 14 VAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73
+A++SKV+P RSHTVAAQGG +A D++ +H DT+ G D+L +QD +++
Sbjct: 33 IALISKVYPMRSHTVAAQGGSAAVA--QDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHC 90
Query: 74 PKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQR 133
P + +LE +G P+ R +G++ R FGG I R AD+TG +LHTL+Q
Sbjct: 91 PTEMTQLELWGCPWSRRPDGSVNVRRFGGMK-------IERTWFAADKTGFHMLHTLFQT 143
Query: 134 NLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAA 192
+L + F E +D++ D +G + G+VA+ M G ++ + + ++ATGG GR++
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 193 STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGER 252
+TN I TGDG+GMA G+PL DMEF Q+HPTG+ G+G+L+TEG RGEGGIL+N NG R
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYR 262
Query: 253 FMERYA-----PI------LKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINS 300
+++ Y P+ +L PRD VS+A E ++G P D V LDLRH+
Sbjct: 263 YLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGE 322
Query: 301 ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVN 360
+ + RLP I E+ + V+ +KEPIPV PT HY MGGI T+ N +I
Sbjct: 323 KKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETD--------QNCETRI-K 373
Query: 361 GLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIII 420
GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG + + I + +
Sbjct: 374 GLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGV 433
Query: 421 D-RLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFK 479
+ RL L N G E+ + +++ M+ CG++RT +LM+ K+ L ER K +
Sbjct: 434 EQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRIT 493
Query: 480 DKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND--FKNRDDINWLKHSI 537
D S +FNT + +EL + + A+ SA++RKESRGAH D RDD+N+LKH++
Sbjct: 494 DTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTL 553
Query: 538 WYSNGN---RIEFKPVNLKPL 555
+ + + R+E+ V + L
Sbjct: 554 AFRDADGTTRLEYSDVKITTL 574
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/561 (38%), Positives = 327/561 (58%), Gaps = 38/561 (6%)
Query: 14 VAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73
+A++SKV+P RSHTVAA+GG +A D++ +H DT+ G D+L +QD +++
Sbjct: 33 IALISKVYPMRSHTVAAEGGSAAVA--QDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHC 90
Query: 74 PKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQR 133
P + +LE +G P+ R +G++ R FGG I R AD+TG +LHTL+Q
Sbjct: 91 PTEMTQLELWGCPWSRRPDGSVNVRRFGGMK-------IERTWFAADKTGFHMLHTLFQT 143
Query: 134 NLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAA 192
+L + F E +D++ D +G + G+VA+ M G ++ + + ++ATGG GR++
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 193 STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGER 252
+TN I TGDG+GMA G+PL DMEF Q+HPTG+ G+G+L+TEG RGEGGIL+N NG R
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYR 262
Query: 253 FMERYA-----PI------LKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINS 300
+++ Y P+ +L PRD VS+A E ++G P D V LDLRH+
Sbjct: 263 YLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGE 322
Query: 301 ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVN 360
+ + RLP I E+ + V+ +KEPIPV PT HY MGGI T+ N +I
Sbjct: 323 KKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETD--------QNCETRI-K 373
Query: 361 GLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIII 420
GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG + + I + +
Sbjct: 374 GLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGV 433
Query: 421 D-RLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFK 479
+ RL L N G E+ + +++ M+ CG++RT +LM+ K+ L ER K +
Sbjct: 434 EQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRIT 493
Query: 480 DKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND--FKNRDDINWLKHSI 537
D S +FNT + +EL + + A+ SA++RKESRGAH D RDD+N+LKH++
Sbjct: 494 DTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTL 553
Query: 538 WYSNGN---RIEFKPVNLKPL 555
+ + + R+E+ V + L
Sbjct: 554 AFRDADGTTRLEYSDVKITTL 574
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/561 (38%), Positives = 327/561 (58%), Gaps = 38/561 (6%)
Query: 14 VAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73
+A++SKV+P RSHTVAA+GG +A D++ +H DT+ G D+L +QD +++
Sbjct: 33 IALISKVYPMRSHTVAAEGGSAAVA--QDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHC 90
Query: 74 PKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQR 133
P + +LE +G P+ R +G++ R FGG I R AD+TG +LHTL+Q
Sbjct: 91 PTEMTQLELWGCPWSRRPDGSVNVRRFGGMK-------IERTWFAADKTGFHMLHTLFQT 143
Query: 134 NLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAA 192
+L + F E +D++ D +G + G+VA+ M G ++ + + ++ATGG GR++
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 193 STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGER 252
+TN I TGDG+GMA G+PL DMEF Q+HPTG+ G+G+L+TEG RGEGGIL+N NG R
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYR 262
Query: 253 FMERYA-----PI------LKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINS 300
+++ Y P+ +L PRD VS+A E ++G P D V LDLRH+
Sbjct: 263 YLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGE 322
Query: 301 ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVN 360
+ + RLP I E+ + V+ +KEPIPV PT HY MGGI T+ N +I
Sbjct: 323 KKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETD--------QNCETRI-K 373
Query: 361 GLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIII 420
GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG + + I + +
Sbjct: 374 GLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGV 433
Query: 421 D-RLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFK 479
+ RL L N G E+ + +++ M+ CG++RT +LM+ K+ L ER K +
Sbjct: 434 EQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRIT 493
Query: 480 DKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND--FKNRDDINWLKHSI 537
D S +FNT + +EL + + A+ SA++RKESRGAH D RDD+N+LKH++
Sbjct: 494 DTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTL 553
Query: 538 WYSNGN---RIEFKPVNLKPL 555
+ + + R+E+ V + L
Sbjct: 554 AFRDADGTTRLEYSDVKITTL 574
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/561 (38%), Positives = 326/561 (58%), Gaps = 38/561 (6%)
Query: 14 VAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73
+A++SKV+P RSHTVAA+GG +A D++ +H DT+ G D+L +QD +++
Sbjct: 33 IALISKVYPMRSHTVAAEGGSAAVA--QDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHC 90
Query: 74 PKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQR 133
P + +LE +G P+ R +G++ R FGG I R AD+TG +LHTL+Q
Sbjct: 91 PTEMTQLELWGCPWSRRPDGSVNVRRFGGMK-------IERTWFAADKTGFHMLHTLFQT 143
Query: 134 NLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAA 192
+L + F E +D++ D +G + G+VA+ M G ++ + + ++ATGG GR++
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 193 STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGER 252
+TN I TGDG+GMA G+PL DMEF Q+HP G+ G+G+L+TEG RGEGGIL+N NG R
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPAGLPGSGILMTEGCRGEGGILVNKNGYR 262
Query: 253 FMERYA-----PI------LKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINS 300
+++ Y P+ +L PRD VS+A E ++G P D V LDLRH+
Sbjct: 263 YLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGE 322
Query: 301 ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVN 360
+ + RLP I E+ + V+ +KEPIPV PT HY MGGI T+ N +I
Sbjct: 323 KKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETD--------QNCETRI-K 373
Query: 361 GLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIII 420
GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG + + I + +
Sbjct: 374 GLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGV 433
Query: 421 D-RLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFK 479
+ RL L N G E+ + +++ M+ CG++RT +LM+ K+ L ER K +
Sbjct: 434 EQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRIT 493
Query: 480 DKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND--FKNRDDINWLKHSI 537
D S +FNT + +EL + + A+ SA++RKESRGAH D RDD+N+LKH++
Sbjct: 494 DTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTL 553
Query: 538 WYSNGN---RIEFKPVNLKPL 555
+ + + R+E+ V + L
Sbjct: 554 AFRDADGTTRLEYSDVKITTL 574
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 196/564 (34%), Positives = 290/564 (51%), Gaps = 43/564 (7%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGN--MSK-DNWHWHMFDTIKGS 57
+RA++ Q+GL+ +LS + RSH+ AAQGG+ ASLGN MS DN H DT+KGS
Sbjct: 18 LRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGS 77
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNG-----------TIYQRPFGG---H 103
D+ DQ APK + EL +G+P+ R G TI + F H
Sbjct: 78 DWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIH 137
Query: 104 SSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVA 163
S +FG R C AD TGH +L + L + AI LI +G G V
Sbjct: 138 SRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVV 196
Query: 164 LEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLP-LEDMEFWQF 222
++ TG+I+ +K T++ATGG GRI+ +TNA + G G +A G+ L +ME QF
Sbjct: 197 RDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQF 256
Query: 223 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGR 282
HPT + +G+L+TEG RG+GGIL + +G RFM Y P K+LA RD VSR M + I++G+
Sbjct: 257 HPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGK 316
Query: 283 GC-GPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIP 341
G P H+ LD+ + + I L + EI FA ++ ++ PV+P HY MGGI
Sbjct: 317 GVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIR 376
Query: 342 TNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSL 401
T+ G+ + GL++ GE AC +HG NRLG NS+ + +V G G +
Sbjct: 377 TDYRGEAKL---------KGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE- 426
Query: 402 ELKKIHNKKLPINSIDIIIDRLSK--------LENNKGSESVQSVANDIRKTMQNYCGVF 453
H ++ +++ K L +KG+E V + N ++ M + G+F
Sbjct: 427 -----HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIF 481
Query: 454 RTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRK 513
R ++ K++ L ++ K + K+K N EA + +++ A A+ R
Sbjct: 482 RDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRT 541
Query: 514 ESRGAHAHNDFKNRDDINWLKHSI 537
ESRGAH D+ RDDINWL ++
Sbjct: 542 ESRGAHNREDYPKRDDINWLNRTL 565
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 301 bits (771), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 196/564 (34%), Positives = 290/564 (51%), Gaps = 43/564 (7%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGN--MSK-DNWHWHMFDTIKGS 57
+RA++ Q+GL+ +LS + RSH+ AAQGG+ ASLGN MS DN H DT+KGS
Sbjct: 18 LRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGS 77
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNG-----------TIYQRPFGG---H 103
D+ DQ APK + EL +G+P+ R G TI + F H
Sbjct: 78 DWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIH 137
Query: 104 SSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVA 163
S +FG R C AD TGH +L + L + AI LI +G G V
Sbjct: 138 SRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVV 196
Query: 164 LEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLP-LEDMEFWQF 222
++ TG+I+ +K T++ATGG GRI+ +TNA + G G +A G+ L +ME QF
Sbjct: 197 RDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQF 256
Query: 223 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGR 282
HPT + +G+L+TEG RG+GGIL + +G RFM Y P K+LA RD VSR M + I++G+
Sbjct: 257 HPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGK 316
Query: 283 GC-GPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIP 341
G P H+ LD+ + + I L + EI FA ++ ++ PV+P HY MGGI
Sbjct: 317 GVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIR 376
Query: 342 TNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSL 401
T+ G+ + GL++ GE AC +HG NRLG NS+ + +V G G +
Sbjct: 377 TDYRGEAKL---------KGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE- 426
Query: 402 ELKKIHNKKLPINSIDIIIDRLSK--------LENNKGSESVQSVANDIRKTMQNYCGVF 453
H ++ +++ K L +KG+E V + N ++ M + G+F
Sbjct: 427 -----HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIF 481
Query: 454 RTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRK 513
R ++ K++ L ++ K + K+K N EA + +++ A A+ R
Sbjct: 482 RDGPHLEKSVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRT 541
Query: 514 ESRGAHAHNDFKNRDDINWLKHSI 537
ESRGAH D+ RDDINWL ++
Sbjct: 542 ESRGAHNREDYPKRDDINWLNRTL 565
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 301 bits (771), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 196/564 (34%), Positives = 290/564 (51%), Gaps = 43/564 (7%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGN--MSK-DNWHWHMFDTIKGS 57
+RA++ Q+GL+ +LS + RSH+ AAQGG+ ASLGN MS DN H DT+KGS
Sbjct: 18 LRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGS 77
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNG-----------TIYQRPFGG---H 103
D+ DQ APK + EL +G+P+ R G TI + F H
Sbjct: 78 DWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIH 137
Query: 104 SSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVA 163
S +FG R C AD TGH +L + L + AI LI +G G V
Sbjct: 138 SRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVV 196
Query: 164 LEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLP-LEDMEFWQF 222
++ TG+I+ +K T++ATGG GRI+ +TNA + G G +A G+ L +ME QF
Sbjct: 197 RDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQF 256
Query: 223 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGR 282
HPT + +G+L+TEG RG+GGIL + +G RFM Y P K+LA RD VSR M + I++G+
Sbjct: 257 HPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGK 316
Query: 283 GC-GPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIP 341
G P H+ LD+ + + I L + EI FA ++ ++ PV+P HY MGGI
Sbjct: 317 GVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIR 376
Query: 342 TNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSL 401
T+ G+ + GL++ GE AC +HG NRLG NS+ + +V G G +
Sbjct: 377 TDYRGEAKL---------KGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE- 426
Query: 402 ELKKIHNKKLPINSIDIIIDRLSK--------LENNKGSESVQSVANDIRKTMQNYCGVF 453
H ++ +++ K L +KG+E V + N ++ M + G+F
Sbjct: 427 -----HCANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIF 481
Query: 454 RTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRK 513
R ++ K++ L ++ K + K+K N EA + +++ A A+ R
Sbjct: 482 RDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRT 541
Query: 514 ESRGAHAHNDFKNRDDINWLKHSI 537
ESRGAH D+ RDDINWL ++
Sbjct: 542 ESRGAHNREDYPKRDDINWLNRTL 565
>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WS3|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 238
Score = 290 bits (742), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 167/223 (74%), Gaps = 6/223 (2%)
Query: 567 DIKPYMQKFLVNLSSN-DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGL 625
D P MQ + + D MLLDAL ++K + D SL+ RRSCREGVCGSD +N+NGKNGL
Sbjct: 15 DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGL 73
Query: 626 ACITNLNELKQP---IIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITN-NNPPEKER 681
ACIT ++ L QP I+IRPLPGLPVIRDLVVDM F+ Q+ IKP+L+ N NPP +E
Sbjct: 74 ACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREH 133
Query: 682 LQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFR 741
LQ P QR+ LDGLYECILC CCST+CPSFWWN D+F+GPAGLL AYRF+ DSRD T+ R
Sbjct: 134 LQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSR 193
Query: 742 LDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
LD L D + +FRC SIMNCV CPKGLNP R+I IK +++ R
Sbjct: 194 LDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236
>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
Length = 238
Score = 290 bits (741), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 167/223 (74%), Gaps = 6/223 (2%)
Query: 567 DIKPYMQKFLVNLSSN-DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGL 625
D P MQ + + D MLLDAL ++K + D SL+ RRSCREGVCGSD +N+NGKNGL
Sbjct: 15 DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGL 73
Query: 626 ACITNLNELKQP---IIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITN-NNPPEKER 681
ACIT ++ L QP I+IRPLPGLPVIRDLVVDM F+ Q+ IKP+L+ N NPP +E
Sbjct: 74 ACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREH 133
Query: 682 LQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFR 741
LQ P QR+ LDGLYECILC CCST+CPSFWWN D+F+GPAGLL AYRF+ DSRD T+ R
Sbjct: 134 LQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSR 193
Query: 742 LDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
LD L D + +FRC SIMNCV CPKGLNP R+I IK +++ R
Sbjct: 194 LDGLSDAFSVFRCTSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236
>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|B Chain B, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|B Chain B, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|O Chain O, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|B Chain B, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|O Chain O, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|B Chain B, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|B Chain B, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|O Chain O, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 252
Score = 255 bits (652), Expect = 5e-68, Method: Composition-based stats.
Identities = 117/233 (50%), Positives = 165/233 (70%), Gaps = 4/233 (1%)
Query: 552 LKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGV 611
+K ++ P K D KP MQ + V+L+ M+LDAL +IK ++D +LT RRSCREG+
Sbjct: 11 IKKFSIYRWDPDKPGD-KPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGI 69
Query: 612 CGSDAMNINGKNGLACITNLN-ELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFL 670
CGS AMNI G N LAC ++ +L + I PLP + V++DLV D++ F+ Q+ SI+P+L
Sbjct: 70 CGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYL 129
Query: 671 ITNNNPPE--KERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYR 728
+ + ++ LQS R+ LDGLYECILC CCST+CPS+WWN D+++GPA L+QAYR
Sbjct: 130 KKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYR 189
Query: 729 FISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELM 781
++ DSRD+ T RL L+DP+ L+RC +IMNC TCPKGLNP ++I +IK++M
Sbjct: 190 WMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMM 242
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 170/236 (72%), Gaps = 10/236 (4%)
Query: 552 LKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGV 611
+K + P K D KP+MQ + ++L++ M+LDAL +IK +ID +LT RRSCREG+
Sbjct: 11 IKKFAIYRWDPDKTGD-KPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGI 69
Query: 612 CGSDAMNINGKNGLACI----TNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIK 667
CGS AMNING N LAC TNL+++ + I PLP + VI+DLV D++ F+ Q+ SI+
Sbjct: 70 CGSCAMNINGGNTLACTRRIDTNLDKVSK---IYPLPHMYVIKDLVPDLSNFYAQYKSIE 126
Query: 668 PFLITNNNPPE--KERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQ 725
P+L + E ++ LQS +R+ LDGLYECILC CCST+CPS+WWN D+++GPA L+Q
Sbjct: 127 PYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQ 186
Query: 726 AYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELM 781
AYR++ DSRD+ T RL L+DP+ L+RC +IMNC TCPKGLNP ++I +IK++M
Sbjct: 187 AYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMM 242
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 170/236 (72%), Gaps = 10/236 (4%)
Query: 552 LKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGV 611
+K + P K D KP+MQ + ++L++ M+LDAL +IK +ID +LT RRSCREG+
Sbjct: 11 IKKFAIYRWDPDKTGD-KPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGI 69
Query: 612 CGSDAMNINGKNGLACI----TNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIK 667
CGS AMNING N LAC TNL+++ + I PLP + VI+DLV D++ F+ Q+ SI+
Sbjct: 70 CGSCAMNINGGNTLACTRRIDTNLDKVSK---IYPLPHMYVIKDLVPDLSNFYAQYKSIE 126
Query: 668 PFLITNNNPPE--KERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQ 725
P+L + E ++ LQS +R+ LDGLYECILC CCST+CPS+WWN D+++GPA L+Q
Sbjct: 127 PYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQ 186
Query: 726 AYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELM 781
AYR++ DSRD+ T RL L+DP+ L+RC +IMNC TCPKGLNP ++I +IK++M
Sbjct: 187 AYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMM 242
>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 282
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/216 (53%), Positives = 158/216 (73%), Gaps = 3/216 (1%)
Query: 569 KPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628
KP +QKF V+L M+LDAL +IK ++D +LT RRSCREG+CGS AMNI G+N LACI
Sbjct: 51 KPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACI 110
Query: 629 TNLNE-LKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLI--TNNNPPEKERLQSP 685
N+++ + I PLP + VI+DLV DM LF+ Q+ SI+P+L T N EK++ QS
Sbjct: 111 CNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSI 170
Query: 686 SQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNL 745
+++ LDGLYECILC CCS +CPS+WWN+D+++GPA L+QAYR+I DSRD++ RL +
Sbjct: 171 KEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARM 230
Query: 746 EDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELM 781
+D + F+C +IMNC TCPK LNP R+I +IK L+
Sbjct: 231 QDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLL 266
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 215 bits (548), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/541 (31%), Positives = 262/541 (48%), Gaps = 65/541 (12%)
Query: 4 SLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQ 63
+L+LA + V +LSK T T AQGGI+A D+ H+ DT+ + D+
Sbjct: 24 ALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDE--TDSIDSHVEDTLIAGAGICDR 80
Query: 64 DAIEFMCKEAPKVVYELEHFGMPFDR----NKNGTIYQRPFGGHSSNFGEKPIARACAVA 119
A+EF+ A V L G+ FD N + + GGHS R A
Sbjct: 81 HAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHR-------RILHAA 133
Query: 120 DRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLI-SDSEG-----DILGVVALEMETGNIM 172
D TG + TL + L H A+DLI SD G ++G +
Sbjct: 134 DATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVE 193
Query: 173 ILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV---AG 229
+K +LATGG +++ +TN I++GDG+ MA RAG + ++EF QFHPT +
Sbjct: 194 TCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQA 253
Query: 230 AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKE-GRGCGPNK 288
L+TE +RGEG L +G RFM + +LAPRD V+RA+D E+K G C
Sbjct: 254 RNFLLTEALRGEGAYLKRPDGTRFMPDFDE-RGELAPRDIVARAIDHEMKRLGADC---- 308
Query: 289 DHVMLDLRHINSETIINRLPSILE--IGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYG 346
+ LD+ H ++ I P I E +G ++ +EP+P++P HY GG+ + +G
Sbjct: 309 --MFLDISHKPADFIRQHFPMIYEKLLG---LGIDLTQEPVPIVPAAHYTCGGVMVDDHG 363
Query: 347 QVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI 406
+ V GLYAIGE + +HGANR+ +NSLL+ LV+G SA I + +
Sbjct: 364 RT---------DVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDI-TRRMPYA 413
Query: 407 HN-KKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKK 465
H+ LP S++EN +Q +++R M +Y G+ RT K ++ ++
Sbjct: 414 HDISTLPPWD-------ESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRR 466
Query: 466 IMILDER--RKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND 523
I +L + Y F+ + + LEL NL++ A+ + A+ RKESRG H D
Sbjct: 467 ITMLQQEIDEYYAHFRVSNNL--------LELRNLVQVAELIVRCAMMRKESRGLHFTLD 518
Query: 524 F 524
+
Sbjct: 519 Y 519
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 172/541 (31%), Positives = 261/541 (48%), Gaps = 65/541 (12%)
Query: 4 SLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQ 63
+L+LA + V +LSK T T AQGGI+A D+ H+ DT+ + D+
Sbjct: 24 ALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDE--TDSIDSHVEDTLIAGAGICDR 80
Query: 64 DAIEFMCKEAPKVVYELEHFGMPFDR----NKNGTIYQRPFGGHSSNFGEKPIARACAVA 119
A+EF+ A V L G+ FD N + + GGHS R A
Sbjct: 81 HAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHR-------RILHAA 133
Query: 120 DRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLI-SDSEG-----DILGVVALEMETGNIM 172
D TG + TL + L H A+DLI SD G ++G +
Sbjct: 134 DATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVE 193
Query: 173 ILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV---AG 229
+K +LATGG +++ +TN I++GDG+ MA RAG + ++EF QFHPT +
Sbjct: 194 TCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQA 253
Query: 230 AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKE-GRGCGPNK 288
L+TE +RGEG L +G RFM + +LAPRD V+RA+D E+K G C
Sbjct: 254 RNFLLTEALRGEGAYLKRPDGTRFMPDFDE-RGELAPRDIVARAIDHEMKRLGADC---- 308
Query: 289 DHVMLDLRHINSETIINRLPSILE--IGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYG 346
+ LD+ H ++ I P I E +G ++ +EP+P++P HY GG+ + +G
Sbjct: 309 --MFLDISHKPADFIRQHFPMIYEKLLG---LGIDLTQEPVPIVPAAHYTCGGVMVDDHG 363
Query: 347 QVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI 406
+ V GLYAIGE + +HGAN + +NSLL+ LV+G SA I + +
Sbjct: 364 RT---------DVEGLYAIGEVSYTGLHGANLMASNSLLECLVYGWSAAEDI-TRRMPYA 413
Query: 407 HN-KKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKK 465
H+ LP S++EN +Q +++R M +Y G+ RT K ++ ++
Sbjct: 414 HDISTLPPWD-------ESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRR 466
Query: 466 IMILDER--RKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND 523
I +L + Y F+ + + LEL NL++ A+ + A+ RKESRG H D
Sbjct: 467 ITMLQQEIDEYYAHFRVSNNL--------LELRNLVQVAELIVRCAMMRKESRGLHFTLD 518
Query: 524 F 524
+
Sbjct: 519 Y 519
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 133/393 (33%), Positives = 195/393 (49%), Gaps = 45/393 (11%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ A + L + G V ++SK S T A+GG++AS+G S D+ H DTI+ D L
Sbjct: 12 LSAGVALRRAGKKVTLISKRIDGGS-TPIAKGGVAASVG--SDDSPELHAQDTIRVGDGL 68
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
D + ++ EA V+ E +G F+ + R GGH+ R D
Sbjct: 69 CDVKTVNYVTSEAKNVIETFESWGFEFEED------LRLEGGHTKR-------RVLHRTD 115
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
TG + + L + L + I + I +G + G V + ++ + +
Sbjct: 116 ETGREIFNFLLK--LAREEGIPIIEDRLVEIRVKDGKVTGFVTEKRG----LVEDVDKLV 169
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHP--TGVAGAGVLITEGV 238
LATGG ++ S+ N GDG+ +A +AG L DMEF QFHP T + G L+TE +
Sbjct: 170 LATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGEVFLLTETL 229
Query: 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHI 298
RGEG +IN NGERF+ Y +LAPRD +SRA+ E+ +G V +DL I
Sbjct: 230 RGEGAQIINENGERFLFNYDK-RGELAPRDILSRAIYIEMLKGH-------KVFIDLSKI 281
Query: 299 NSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKI 358
E + P + + + + +K IP+ P H+ GGI NI G+ + I
Sbjct: 282 --EDFERKFPVVAKYLARHGHNYKVK--IPIFPAAHFVDGGIRVNIRGE--------SNI 329
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFG 391
VN LYAIGE + +HGANRL +NSLL+ LVFG
Sbjct: 330 VN-LYAIGEVSDSGLHGANRLASNSLLEGLVFG 361
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 243
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 116/228 (50%), Gaps = 3/228 (1%)
Query: 552 LKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGV 611
+K L ++ V D P+ + V + LLDAL IK ++ L+ R SCR +
Sbjct: 3 MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTS-LLDALGYIKDNLAPDLSYRWSCRMAI 61
Query: 612 CGSDAMNINGKNGLACITNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLI 671
CGS M +N LAC T L + + + L P+ RDLVVDMT F + +IKP++I
Sbjct: 62 CGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYII 121
Query: 672 TNNNPPEK-ERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFI 730
N+ ++ +Q+P+Q CI CG C ACP F N + F+GPA + A+R+
Sbjct: 122 GNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYN 180
Query: 731 SDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIK 778
DSRD R+ L ++ C + C + CPK ++P +I + K
Sbjct: 181 EDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGK 228
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +HY MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHYTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 191/454 (42%), Gaps = 94/454 (20%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P C
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTG-GCG 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
V L +RN+ + N I+++ D +G + G++ M G + ++
Sbjct: 253 VGAHVVQVLYDNAVKRNIDLRMNT----RGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAM----------- 274
GV++TE VRG G IL+N G+RF + ++ RD S A+
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRF-------VNEITTRDKASAAILAQTGKSAYLI 420
Query: 275 -DQEIKE---------GRGCGPNKDHVM-------LDLRHINSETIIN------------ 305
D +++ G G P D ++ +D + + +ET+
Sbjct: 421 FDDSVRKSLCKIDKYIGLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTD 479
Query: 306 ----RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNG 361
LP L GN +A I V P +H+ MGG+ + +V+ N +++ G
Sbjct: 480 FERPNLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPG 528
Query: 362 LYAIGECACVSVHGANRLGTNSLLDLLVFGRSAG 395
LY GE VHGANRLG N++ D++ FGR AG
Sbjct: 529 LYGAGEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTKDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTADKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/450 (26%), Positives = 193/450 (42%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHATMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE V+G G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVKGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 194/450 (43%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++T+ VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTDAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 193/450 (42%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 193/450 (42%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ HPT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTADKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 193/450 (42%), Gaps = 86/450 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIKGS 57
A++ G V ++ K + A GG++A+ + K D+ DT+KG
Sbjct: 141 AAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGG 200
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
+ D ++ + + V + G D G + GG S N +P A
Sbjct: 201 QNINDPALVKVLSSHSKDSVDWMTAMGA--DLTDVGMM-----GGASVNRAHRPTGGAG- 252
Query: 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
G ++ LY + + + I+++ D +G + G++ M G + ++
Sbjct: 253 ----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-KAD 307
Query: 178 ITILATGGGGR------IWAASTNAFINT------GDGLGMAARAGLPLEDMEFWQFHPT 225
ILATGG + S FI+T GDGL +A AG L+DM++ Q PT
Sbjct: 308 AVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAAPT 367
Query: 226 GVAGAGVLITEGVRGEGGILINSNGERFME-----------------RYAPILKDLAPRD 268
GV++TE VRG G IL+N G+RF+ + A ++ D + R
Sbjct: 368 LSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRK 427
Query: 269 FVSRAMDQEIKEGRGCGPNKDHVM-------LDLRHINSETIIN---------------- 305
+S+ +D+ I G G P D ++ +D + + +ET+
Sbjct: 428 SLSK-IDKYI--GLGVAPTADSLVKLGKMEGIDGKAL-TETVARYNSLVSSGKDTDFERP 483
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
LP L GN +A I V P +H+ MGG+ + +V+ N +++ GLY
Sbjct: 484 NLPRALNEGNYYA--------IEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGA 532
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GE VHGANRLG N++ D++ FGR AG
Sbjct: 533 GEVTG-GVHGANRLGGNAISDIITFGRLAG 561
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 116/455 (25%), Positives = 191/455 (41%), Gaps = 76/455 (16%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISA-----SLGNMSKDNWHWHMFDTIKGS 57
ASL + G NV ++ K + +++ + GG++A + +D W + D +KG
Sbjct: 136 ASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGG 195
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFD---RNKNGTI--YQRPFGGHSSNFGEKPI 112
D + + +++ V LE G D R+ + RP GG SS
Sbjct: 196 RQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSS------- 248
Query: 113 ARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIM 172
G ++ TL + + + + L+ + + ++G V TG M
Sbjct: 249 ----------GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYM 298
Query: 173 ILESKITILATGGGG---RIWA---------ASTNAFINTGDGLGMAARAGLPLEDMEFW 220
I +K +LATGG G + A S+N TGDG+ MA G + D+++
Sbjct: 299 I-GAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWV 357
Query: 221 QFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYA-------PILKDLAPRDFVSRA 273
Q HPT + +LI+E VRG G +++N +G RF+ ILK P F
Sbjct: 358 QAHPTVGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQ--PGQFAWII 415
Query: 274 MDQEIKEGRGCGPNKDHVMLDLRHINSETI-------INRLPSILEIGNKFAN------- 319
D ++ + DH+ + + E + + L + N +
Sbjct: 416 FDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDTAF 475
Query: 320 ------VNALKEP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECAC 370
+N + P + V P IH+ MGG+ N V+ + +K ++GL+A GE
Sbjct: 476 GRADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVL---DLQSKPIDGLFAAGEVTG 532
Query: 371 VSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405
VHG NRLG N++ D +VFGR AG++ L K
Sbjct: 533 -GVHGYNRLGGNAIADTVVFGRIAGDNAAKHALDK 566
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 178/439 (40%), Gaps = 79/439 (17%)
Query: 11 GLNVAILSKVFPTRSHTVAAQGGISASLGNMS-----KDNWHWHMFDTIKGSDYLGDQDA 65
G V +L K +T A GG++A+ +D + DT+KG + D +
Sbjct: 149 GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPEL 208
Query: 66 IEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHA 125
++ + + + L G T R GG S N +P A G
Sbjct: 209 VKVLANNSSDSIDWLTSMGADM------TDVGR-MGGASVNRSHRPTGGAG-----VGAH 256
Query: 126 LLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185
+ L+ + T+ + + ++ D+ G + GV+ TG ++++ ++A GG
Sbjct: 257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIKADAVVIAAGG 315
Query: 186 GGR------------IWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVL 233
+ +TN TGDGL +A +AG D+E+ Q HPT GV+
Sbjct: 316 FAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPTYSPAGGVM 375
Query: 234 ITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE---------------- 277
ITE VRG G I++N G RFM ++ RD S A+ Q+
Sbjct: 376 ITEAVRGNGAIVVNREGNRFM-------NEITTRDKASAAILQQKGESAYLVFDDSIRKS 428
Query: 278 ------------IKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGN--KFANVNAL 323
+KEG+ + +D+ + ++ G +F +
Sbjct: 429 LKAIEGYVHLNIVKEGKTI--EELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLP 486
Query: 324 KE-------PIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGA 376
+E + + P +H+ MGG+ + +V + K + GLYA GE VHGA
Sbjct: 487 RELVVAPFYALEIAPAVHHTMGGLVIDTKAEV--KSEKTGKPITGLYAAGEVTG-GVHGA 543
Query: 377 NRLGTNSLLDLLVFGRSAG 395
NRLG N++ D++ +GR AG
Sbjct: 544 NRLGGNAISDIVTYGRIAG 562
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 569 KPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628
KP+ Q++ + + + + + L+ I+ D L CR G+CGS M ING+ LAC
Sbjct: 20 KPHFQEYKIEEAPSMTIFI-VLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACR 78
Query: 629 TNLNELKQPII-IRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQ 687
T + + +I + PLP +I+DL VD +F + I + +L+ +
Sbjct: 79 TLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIE 138
Query: 688 RKILDGLYE---CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDN 744
++ ++E CI CGCC AC + D FVG AGL + RF+ D DE T+
Sbjct: 139 PEVAQEVFELDRCIECGCCIAACGTKIMRED-FVGAAGLNRVVRFMIDPHDERTD----- 192
Query: 745 LEDPYRL-------FRCRSIMNCVDTCPKGLNPNRSINKIKELMI 782
ED Y L F C +++ C D CPK L I ++ M+
Sbjct: 193 -EDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMV 236
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 569 KPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628
KP+ Q++ + + + + + L+ I+ D L CR G+CGS M ING+ LAC
Sbjct: 20 KPHFQEYKIEEAPSMTIFI-VLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACR 78
Query: 629 TNLNELKQPII-IRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQ 687
T + + +I + PLP +I+DL VD +F + I + +L+ +
Sbjct: 79 TLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIE 138
Query: 688 RKILDGLYE---CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDN 744
++ ++E CI CGCC AC + D FVG AGL + RF+ D DE T+
Sbjct: 139 PEVAQEVFELDRCIECGCCIAACGTKIMRED-FVGAAGLNRVVRFMIDPHDERTD----- 192
Query: 745 LEDPYRL-------FRCRSIMNCVDTCPKGLNPNRSINKIKELMI 782
ED Y L F C +++ C D CPK L I ++ M+
Sbjct: 193 -EDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMV 236
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 179/439 (40%), Gaps = 79/439 (17%)
Query: 11 GLNVAILSKVFPTRSHTVAAQGGISASLGNMS-----KDNWHWHMFDTIKGSDYLGDQDA 65
G V +L K +T A GG++A+ +D + DT+KG + D +
Sbjct: 149 GAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPEL 208
Query: 66 IEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHA 125
++ + + + L G D G + GG S N +P A G
Sbjct: 209 VKVLANNSSDSIDWLTSMGA--DMTDVGRM-----GGASVNRSHRPTGGAG-----VGAH 256
Query: 126 LLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185
+ L+ + T+ + + ++ D+ G + GV+ TG ++++ ++A GG
Sbjct: 257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIKADAVVIAAGG 315
Query: 186 GGR------------IWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVL 233
+ +TN TGDGL +A +AG D+++ Q HPT GV+
Sbjct: 316 FAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLQYIQAHPTYSPAGGVM 375
Query: 234 ITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE---------------- 277
ITE VRG G I++N G RFM ++ RD S A+ Q+
Sbjct: 376 ITEAVRGNGAIVVNREGNRFM-------NEITTRDKASAAILQQKGESAYLVFDDSIRKS 428
Query: 278 ------------IKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGN--KFANVNAL 323
+KEG+ + +D+ + ++ G +F +
Sbjct: 429 LKAIEGYVHLNIVKEGKTI--EELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLP 486
Query: 324 KE-------PIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGA 376
+E + + P +H+ MGG+ + +V + K + GLYA GE VHGA
Sbjct: 487 RELVVAPFYALEIAPAVHHTMGGLVIDTKAEV--KSEKTAKPITGLYAAGEVTG-GVHGA 543
Query: 377 NRLGTNSLLDLLVFGRSAG 395
NRLG N++ D++ +GR AG
Sbjct: 544 NRLGGNAISDIVTYGRIAG 562
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 130/615 (21%), Positives = 230/615 (37%), Gaps = 143/615 (23%)
Query: 11 GLNVAILSKVFPTRSHTVAAQGGISA-----------SLGNMSKDNWHWHMFDTIKGSDY 59
GL V ++ K RS VA G+SA N +D + D +
Sbjct: 49 GLKVTLVEKAAVERSGAVAQ--GLSAINTYIDLTGRSERQNTLEDYVRYVTLDMMG---- 102
Query: 60 LGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE--KPI-ARAC 116
L +D + + V+ E +G+P + +G Y R GE KPI A A
Sbjct: 103 LAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAA 161
Query: 117 AVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSE--GDILGVVALEMETGNIMIL 174
+A + + N++ + F +L+ D+ + G V + +
Sbjct: 162 KMA----------VGEENIYERVFIF------ELLKDNNDPNAVAGAVGFSVREPKFYVF 205
Query: 175 ESKITILATGGG-------------GRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQ 221
++K ILATGG GR W A +TG G M +AG L E +
Sbjct: 206 KAKAVILATGGATLLFRPRSTGEAAGRTW----YAIFDTGSGYYMGLKAGAMLTQFEH-R 260
Query: 222 FHP------TGVAGAGVLITEGVRGEGGILINSNGERF-------MERYAPI-LKDLAPR 267
F P G GA L + N+ GE + +E+Y P P
Sbjct: 261 FIPFRFKDGYGPVGAWFLFFKCKAK------NAYGEEYIKTRAAELEKYKPYGAAQPIPT 314
Query: 268 DFVSRAMDQEIKEG-RGCGPNKDHVMLDL--------RHINSETIINRLPSILEIGNKFA 318
+ + EI +G + + + + +L +HI E + L + +A
Sbjct: 315 PLRNHQVMLEIMDGNQPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWA 374
Query: 319 --NVNALKEPIPVIPTIHYQMGGI----------PTNI----YGQVIIPNNDNNKIVNGL 362
N++ ++P P Y MG P ++ Y ++ + V GL
Sbjct: 375 CQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGL 434
Query: 363 YAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDR 422
+AIG+CA + H + + S + GR A + L++ N ++ D +++
Sbjct: 435 FAIGDCAGANPH---KFSSGSFTE----GRIAAKAAVRFILEQKPNPEID----DAVVEE 483
Query: 423 LSKLENNKGSESVQ----SVANDI--------------RKTMQNYCG----VFRT-DKLM 459
L K +Q S A+D+ +K M Y +++T +K++
Sbjct: 484 LKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKML 543
Query: 460 KNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESR--G 517
+ + + L E + ++ +D ++ + A EL + + TA+A + + RKE+R G
Sbjct: 544 QRALELLAFLKEDLEKLAARDLHEL-----MRAWELVHRVWTAEAHVRHMLFRKETRWPG 598
Query: 518 AHAHNDFKNRDDINW 532
+ D+ +D W
Sbjct: 599 YYYRTDYPELNDEEW 613
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 130/615 (21%), Positives = 229/615 (37%), Gaps = 143/615 (23%)
Query: 11 GLNVAILSKVFPTRSHTVAAQGGISA-----------SLGNMSKDNWHWHMFDTIKGSDY 59
GL V ++ K RS VA G+SA N +D + D +
Sbjct: 49 GLKVTLVEKAAVERSGAVAQ--GLSAINTYIDLTGRSERQNTLEDYVRYVTLDMMG---- 102
Query: 60 LGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE--KPI-ARAC 116
L +D + + V+ E +G+P + +G Y R GE KPI A A
Sbjct: 103 LAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAA 161
Query: 117 AVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSE--GDILGVVALEMETGNIMIL 174
+A + + N++ + F +L+ D + G V + +
Sbjct: 162 KMA----------VGEENIYERVFIF------ELLKDKNDPNAVAGAVGFSVREPKFYVF 205
Query: 175 ESKITILATGGG-------------GRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQ 221
++K ILATGG GR W A +TG G M +AG L E +
Sbjct: 206 KAKAVILATGGATLLFRPRSTGEAAGRTW----YAIFDTGSGYYMGLKAGAMLTQFEH-R 260
Query: 222 FHP------TGVAGAGVLITEGVRGEGGILINSNGERF-------MERYAPI-LKDLAPR 267
F P G GA L + N+ GE + +E+Y P P
Sbjct: 261 FIPFRFKDGYGPVGAWFLFFKCKAK------NAYGEEYIKTRAAELEKYKPYGAAQPIPT 314
Query: 268 DFVSRAMDQEIKEG-RGCGPNKDHVMLDL--------RHINSETIINRLPSILEIGNKFA 318
+ + EI +G + + + + +L +HI E + L + +A
Sbjct: 315 PLRNHQVMLEIMDGNQPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWA 374
Query: 319 --NVNALKEPIPVIPTIHYQMGGI----------PTNI----YGQVIIPNNDNNKIVNGL 362
N++ ++P P Y MG P ++ Y ++ + V GL
Sbjct: 375 CQNIDPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGL 434
Query: 363 YAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDR 422
+AIG+CA + H + + S + GR A + L++ N ++ D +++
Sbjct: 435 FAIGDCAGANPH---KFSSGSFTE----GRIAAKAAVRFILEQKPNPEID----DAVVEE 483
Query: 423 LSKLENNKGSESVQ----SVANDI--------------RKTMQNYCG----VFRT-DKLM 459
L K +Q S A+D+ +K M Y +++T +K++
Sbjct: 484 LKKKAYAPMERFMQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKML 543
Query: 460 KNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESR--G 517
+ + + L E + ++ +D ++ + A EL + + TA+A + + RKE+R G
Sbjct: 544 QRALELLAFLKEDLEKLAARDLHEL-----MRAWELVHRVWTAEAHVRHMLFRKETRWPG 598
Query: 518 AHAHNDFKNRDDINW 532
+ D+ +D W
Sbjct: 599 YYYRTDYPELNDEEW 613
>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
Length = 195
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 675 NPPEKERLQSPSQRKILDGLY-----ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRF 729
NPP + + + DGL +CI CG C ACP R++ PAG + F
Sbjct: 63 NPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPY----DARYLHPAGYVSKCTF 118
Query: 730 ISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCP 765
+ RL+ + P CV+TCP
Sbjct: 119 CAH--------RLEKGKVP----------ACVETCP 136
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 197 FINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV 232
+N+G G +AR G+ D+ W H TGV G GV
Sbjct: 38 LLNSGQD-GFSARGGIAGNDLNLWWAHRTGVLGQGV 72
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 533 LKHSIWYSNGNRIEFKPVNLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKM 585
L++ ++ N N++E +N P ++ + + + K + L NLSSNDK+
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 9 QEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEF 68
+E V L K + T+ T+ A+ + LG ++ WH H+ +K S + ++D I F
Sbjct: 13 EEDQKVIELVKKYGTKQWTLIAKH-LKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIF 71
Query: 69 MCKEAPKVV 77
EA KV+
Sbjct: 72 ---EAHKVL 77
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
pdb|1B43|B Chain B, Fen-1 From P. Furiosus
Length = 340
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 400 SLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVF-RTDKL 458
+EL+ ++ KK+ I++++ I LS + G+ + S + + G+F RT L
Sbjct: 13 EIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKG----RITSHLSGLFYRTINL 68
Query: 459 MKNGYKKIMILD 470
M+ G K + + D
Sbjct: 69 MEAGIKPVYVFD 80
>pdb|1RW7|A Chain A, Crystal Structure Of Ydr533cp
Length = 243
Score = 29.3 bits (64), Expect = 9.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 485 FNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRD-DIN 531
FNT R E E+D + ET K K+ DFKN+D D N
Sbjct: 35 FNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82
>pdb|1QVV|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|C Chain C, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVV|D Chain D, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 485 FNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRD-DIN 531
FNT R E E+D + ET K K+ DFKN+D D N
Sbjct: 35 FNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82
>pdb|1QVZ|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVZ|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 485 FNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRD-DIN 531
FNT R E E+D + ET K K+ DFKN+D D N
Sbjct: 35 FNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82
>pdb|1QVW|A Chain A, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
pdb|1QVW|B Chain B, Crystal Structure Of The S. Cerevisiae Ydr533c Protein
Length = 237
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 485 FNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRD-DIN 531
FNT R E E+D + ET K K+ DFKN+D D N
Sbjct: 35 FNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,410,503
Number of Sequences: 62578
Number of extensions: 1092163
Number of successful extensions: 2548
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2352
Number of HSP's gapped (non-prelim): 78
length of query: 786
length of database: 14,973,337
effective HSP length: 107
effective length of query: 679
effective length of database: 8,277,491
effective search space: 5620416389
effective search space used: 5620416389
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)