Query psy9575
Match_columns 786
No_of_seqs 601 out of 5041
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 23:09:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00128 Succinate dehydrogena 100.0 1.3E-99 3E-104 871.6 58.8 565 1-565 63-633 (635)
2 PRK05675 sdhA succinate dehydr 100.0 1E-99 2E-104 868.4 57.2 566 1-566 1-569 (570)
3 COG0029 NadB Aspartate oxidase 100.0 1E-100 3E-105 802.2 42.2 487 1-541 20-512 (518)
4 PRK08958 sdhA succinate dehydr 100.0 8.1E-99 2E-103 862.9 56.3 567 1-567 20-588 (588)
5 PTZ00139 Succinate dehydrogena 100.0 2E-98 4E-103 863.1 58.0 566 1-566 42-616 (617)
6 TIGR01816 sdhA_forward succina 100.0 4.7E-98 1E-102 855.0 58.1 559 7-566 1-564 (565)
7 PRK09078 sdhA succinate dehydr 100.0 1.6E-97 3E-102 855.0 59.1 566 1-566 25-597 (598)
8 PRK07057 sdhA succinate dehydr 100.0 9.2E-97 2E-101 847.6 56.6 563 1-566 25-590 (591)
9 PRK08626 fumarate reductase fl 100.0 8.7E-97 2E-101 852.8 56.4 549 1-569 18-600 (657)
10 PRK06452 sdhA succinate dehydr 100.0 1.3E-96 3E-101 843.2 55.9 543 1-567 18-566 (566)
11 PRK08205 sdhA succinate dehydr 100.0 1.9E-95 4E-100 837.7 57.5 556 1-566 18-582 (583)
12 TIGR01176 fum_red_Fp fumarate 100.0 1.1E-95 2E-100 834.4 55.0 543 1-567 16-579 (580)
13 TIGR01811 sdhA_Bsu succinate d 100.0 2.7E-95 6E-100 834.9 55.8 545 1-567 11-603 (603)
14 PRK05945 sdhA succinate dehydr 100.0 5.6E-95 1.2E-99 833.4 55.9 549 1-566 16-574 (575)
15 PRK08641 sdhA succinate dehydr 100.0 9.1E-95 2E-99 830.7 56.4 544 1-567 16-579 (589)
16 PRK09231 fumarate reductase fl 100.0 5.9E-94 1.3E-98 822.9 55.7 543 1-567 17-580 (582)
17 PRK07573 sdhA succinate dehydr 100.0 1.7E-93 3.8E-98 824.2 55.3 544 1-567 48-639 (640)
18 PRK06069 sdhA succinate dehydr 100.0 3E-93 6.5E-98 820.4 55.9 549 1-566 18-576 (577)
19 TIGR01812 sdhA_frdA_Gneg succi 100.0 1.1E-90 2.3E-95 800.9 57.9 545 1-563 12-562 (566)
20 PRK07803 sdhA succinate dehydr 100.0 1.1E-90 2.3E-95 801.5 54.5 530 1-551 21-600 (626)
21 COG1053 SdhA Succinate dehydro 100.0 2E-91 4.4E-96 783.7 43.4 534 1-551 19-560 (562)
22 PLN02815 L-aspartate oxidase 100.0 1.8E-90 3.9E-95 788.9 50.3 512 1-540 42-570 (594)
23 PRK07395 L-aspartate oxidase; 100.0 3.5E-88 7.6E-93 768.5 50.6 507 1-540 22-546 (553)
24 PRK06263 sdhA succinate dehydr 100.0 1.6E-87 3.4E-92 768.3 54.2 511 1-542 20-536 (543)
25 PRK09077 L-aspartate oxidase; 100.0 2.9E-84 6.2E-89 738.6 51.2 500 1-540 21-533 (536)
26 PRK07804 L-aspartate oxidase; 100.0 6.5E-84 1.4E-88 735.6 51.1 488 1-541 29-526 (541)
27 PRK07512 L-aspartate oxidase; 100.0 2.1E-83 4.6E-88 726.8 46.8 471 1-540 22-498 (513)
28 KOG2403|consensus 100.0 3.5E-85 7.5E-90 685.5 26.7 566 1-567 68-642 (642)
29 PRK08071 L-aspartate oxidase; 100.0 6.3E-83 1.4E-87 722.4 47.3 484 1-540 16-503 (510)
30 TIGR00551 nadB L-aspartate oxi 100.0 2.2E-80 4.7E-85 701.1 48.4 470 1-525 15-488 (488)
31 TIGR02061 aprA adenosine phosp 100.0 7.7E-79 1.7E-83 692.6 48.4 500 1-551 12-611 (614)
32 PRK13800 putative oxidoreducta 100.0 5.6E-78 1.2E-82 723.0 48.7 518 1-567 26-577 (897)
33 PRK08275 putative oxidoreducta 100.0 1.5E-76 3.2E-81 678.7 49.7 501 1-551 22-552 (554)
34 PRK06854 adenylylsulfate reduc 100.0 2.3E-76 5.1E-81 680.0 50.8 499 1-552 24-600 (608)
35 PRK08401 L-aspartate oxidase; 100.0 3.4E-75 7.3E-80 654.3 43.0 443 1-536 14-458 (466)
36 PRK06175 L-aspartate oxidase; 100.0 1.4E-60 3E-65 529.8 41.5 409 1-464 17-431 (433)
37 COG0479 FrdB Succinate dehydro 100.0 4.1E-51 8.9E-56 398.3 17.1 224 556-785 6-231 (234)
38 PRK06481 fumarate reductase fl 100.0 1.3E-49 2.8E-54 451.3 32.1 368 1-404 74-505 (506)
39 KOG2404|consensus 100.0 4E-50 8.7E-55 394.6 19.4 367 1-402 22-470 (477)
40 PRK12575 succinate dehydrogena 100.0 2.5E-49 5.5E-54 394.7 17.2 226 556-784 8-233 (235)
41 PLN00129 succinate dehydrogena 100.0 4.2E-49 9E-54 397.7 17.0 223 557-781 48-273 (276)
42 PRK13552 frdB fumarate reducta 100.0 1.7E-48 3.7E-53 391.5 16.9 227 556-785 8-239 (239)
43 PTZ00306 NADH-dependent fumara 100.0 7.5E-46 1.6E-50 454.2 38.0 381 1-405 422-905 (1167)
44 TIGR01813 flavo_cyto_c flavocy 100.0 3.2E-46 6.9E-51 419.5 31.4 362 1-396 12-439 (439)
45 PRK08640 sdhB succinate dehydr 100.0 1.2E-47 2.6E-52 387.2 16.2 225 556-785 9-242 (249)
46 PF00890 FAD_binding_2: FAD bi 100.0 5.1E-46 1.1E-50 415.8 30.2 362 1-384 12-417 (417)
47 PRK12845 3-ketosteroid-delta-1 100.0 4.4E-44 9.6E-49 407.7 34.9 383 1-400 28-563 (564)
48 PRK07121 hypothetical protein; 100.0 8.1E-44 1.8E-48 404.4 35.9 380 1-401 33-490 (492)
49 PRK12837 3-ketosteroid-delta-1 100.0 9.7E-44 2.1E-48 403.9 35.8 385 1-400 19-510 (513)
50 PRK12385 fumarate reductase ir 100.0 2.4E-45 5.1E-50 370.5 16.6 225 556-784 10-235 (244)
51 PRK12386 fumarate reductase ir 100.0 3.9E-45 8.4E-50 366.5 17.4 221 556-785 8-234 (251)
52 PRK05950 sdhB succinate dehydr 100.0 6E-45 1.3E-49 368.1 18.0 228 555-785 2-231 (232)
53 PRK12844 3-ketosteroid-delta-1 100.0 3.3E-43 7.2E-48 402.1 33.8 381 1-404 19-552 (557)
54 PRK12577 succinate dehydrogena 100.0 6.1E-45 1.3E-49 385.1 17.9 224 556-785 6-242 (329)
55 TIGR02485 CobZ_N-term precorri 100.0 6.6E-43 1.4E-47 391.0 33.5 367 1-402 9-430 (432)
56 PRK08274 tricarballylate dehyd 100.0 2.1E-42 4.6E-47 391.3 34.2 380 1-404 17-463 (466)
57 PRK12835 3-ketosteroid-delta-1 100.0 6.8E-42 1.5E-46 392.5 36.6 396 1-405 24-573 (584)
58 PRK12834 putative FAD-binding 100.0 1.4E-42 3E-47 398.1 30.3 387 1-400 17-548 (549)
59 TIGR00384 dhsB succinate dehyd 100.0 6.9E-44 1.5E-48 357.7 16.7 218 557-778 1-220 (220)
60 PRK12576 succinate dehydrogena 100.0 6.9E-43 1.5E-47 359.2 17.8 221 555-783 11-237 (279)
61 PRK12839 hypothetical protein; 100.0 1.9E-39 4.2E-44 370.8 35.8 387 1-401 21-567 (572)
62 PRK07570 succinate dehydrogena 100.0 1.4E-41 3.1E-46 341.7 15.1 219 556-785 6-244 (250)
63 PRK12843 putative FAD-binding 100.0 9.8E-39 2.1E-43 367.3 35.9 388 1-404 29-574 (578)
64 PRK07843 3-ketosteroid-delta-1 100.0 4.4E-39 9.5E-44 368.6 31.9 384 1-401 20-556 (557)
65 KOG3049|consensus 100.0 2.9E-41 6.3E-46 310.3 11.1 229 554-783 48-280 (288)
66 PRK12842 putative succinate de 100.0 6.5E-38 1.4E-42 361.0 35.6 391 1-405 22-570 (574)
67 PRK06134 putative FAD-binding 100.0 7.6E-37 1.7E-41 351.9 36.5 387 1-403 25-572 (581)
68 PRK06259 succinate dehydrogena 100.0 4.8E-33 1E-37 314.6 16.5 213 555-785 6-219 (486)
69 PF02910 Succ_DH_flav_C: Fumar 100.0 8.4E-30 1.8E-34 232.8 12.0 126 439-567 1-129 (129)
70 PF13085 Fer2_3: 2Fe-2S iron-s 100.0 1.5E-28 3.2E-33 212.6 7.7 105 555-661 2-110 (110)
71 COG2081 Predicted flavoprotein 99.9 2.7E-25 5.8E-30 230.2 24.1 339 1-402 16-407 (408)
72 COG3573 Predicted oxidoreducta 99.9 2E-24 4.3E-29 214.6 16.8 385 1-400 18-550 (552)
73 PF03486 HI0933_like: HI0933-l 99.9 3.1E-24 6.7E-29 233.9 15.3 338 1-397 13-409 (409)
74 TIGR00275 flavoprotein, HI0933 99.9 6.7E-22 1.5E-26 218.2 28.8 334 1-396 10-400 (400)
75 TIGR03862 flavo_PP4765 unchara 99.9 1.9E-19 4.1E-24 192.9 28.6 324 11-402 1-375 (376)
76 COG3383 Uncharacterized anaero 99.9 4.1E-23 8.9E-28 224.1 -0.4 178 575-769 13-209 (978)
77 PTZ00305 NADH:ubiquinone oxido 99.8 8.2E-23 1.8E-27 203.7 -4.5 137 573-711 74-228 (297)
78 PRK08493 NADH dehydrogenase su 99.8 9.4E-21 2E-25 219.9 1.6 136 574-711 8-157 (819)
79 COG1034 NuoG NADH dehydrogenas 99.8 4.7E-20 1E-24 208.0 1.7 183 573-774 7-206 (693)
80 PRK09130 NADH dehydrogenase su 99.8 3.8E-20 8.1E-25 215.2 -3.6 178 574-770 8-203 (687)
81 TIGR01973 NuoG NADH-quinone ox 99.7 2.2E-19 4.8E-24 208.4 -3.9 180 573-771 4-201 (603)
82 PRK09129 NADH dehydrogenase su 99.7 7.6E-19 1.6E-23 210.0 -2.8 180 574-772 8-204 (776)
83 PRK07860 NADH dehydrogenase su 99.7 8.1E-18 1.8E-22 200.0 3.9 181 572-771 9-209 (797)
84 PRK07569 bidirectional hydroge 99.7 3.6E-18 7.9E-23 173.2 -2.0 133 575-709 11-160 (234)
85 PRK08166 NADH dehydrogenase su 99.6 1.1E-16 2.4E-21 192.9 0.1 176 576-770 10-207 (847)
86 COG1139 Uncharacterized conser 99.4 1.9E-13 4.2E-18 142.1 3.0 83 690-784 303-390 (459)
87 COG1249 Lpd Pyruvate/2-oxoglut 99.3 5E-12 1.1E-16 139.3 9.3 288 2-400 18-334 (454)
88 COG1150 HdrC Heterodisulfide r 99.3 6.6E-12 1.4E-16 117.8 6.2 80 694-786 38-117 (195)
89 PRK11274 glcF glycolate oxidas 99.2 2.7E-11 5.9E-16 134.7 8.2 95 683-784 11-105 (407)
90 TIGR03290 CoB_CoM_SS_C CoB--Co 99.2 4.2E-11 9.2E-16 112.0 6.5 78 695-785 2-79 (144)
91 PF13510 Fer2_4: 2Fe-2S iron-s 99.1 2.6E-11 5.5E-16 101.0 3.3 66 575-642 11-82 (82)
92 TIGR00273 iron-sulfur cluster- 99.1 8.1E-11 1.8E-15 128.8 6.0 83 691-785 289-376 (432)
93 PRK11168 glpC sn-glycerol-3-ph 98.9 1.1E-09 2.3E-14 121.7 5.9 80 694-784 6-86 (396)
94 PRK05329 anaerobic glycerol-3- 98.9 5.6E-08 1.2E-12 107.0 19.3 60 124-187 259-318 (422)
95 PRK04176 ribulose-1,5-biphosph 98.9 1.6E-08 3.4E-13 104.5 13.1 131 1-188 38-174 (257)
96 TIGR00136 gidA glucose-inhibit 98.8 5.8E-06 1.2E-10 93.7 31.2 60 123-188 95-155 (617)
97 TIGR03379 glycerol3P_GlpC glyc 98.8 3.3E-09 7.2E-14 117.5 5.3 80 694-784 4-84 (397)
98 PLN02661 Putative thiazole syn 98.8 3.1E-08 6.8E-13 104.6 11.9 129 1-187 105-244 (357)
99 PRK12814 putative NADPH-depend 98.8 4.7E-09 1E-13 123.2 5.7 68 573-642 9-79 (652)
100 PF13183 Fer4_8: 4Fe-4S diclus 98.8 1.3E-09 2.8E-14 84.6 0.6 56 694-768 2-57 (57)
101 KOG2282|consensus 98.8 1.3E-09 2.8E-14 114.7 -0.3 73 569-643 34-109 (708)
102 PRK05192 tRNA uridine 5-carbox 98.7 7.9E-06 1.7E-10 92.8 29.4 58 124-188 100-158 (618)
103 TIGR00292 thiazole biosynthesi 98.7 9.3E-08 2E-12 98.4 12.8 130 1-187 34-170 (254)
104 TIGR01424 gluta_reduc_2 glutat 98.7 8.5E-08 1.8E-12 108.1 13.4 46 337-400 280-325 (446)
105 PLN02546 glutathione reductase 98.7 2.3E-08 4.9E-13 114.5 8.3 46 337-400 367-412 (558)
106 PRK06467 dihydrolipoamide dehy 98.7 8.1E-08 1.8E-12 108.9 12.1 46 337-400 291-336 (471)
107 COG1635 THI4 Ribulose 1,5-bisp 98.7 1.5E-07 3.3E-12 90.3 11.6 128 1-185 43-176 (262)
108 COG0247 GlpC Fe-S oxidoreducta 98.7 2E-08 4.3E-13 111.4 6.4 84 693-784 7-90 (388)
109 TIGR01421 gluta_reduc_1 glutat 98.7 5.6E-08 1.2E-12 109.5 10.0 45 337-399 282-326 (450)
110 PF01134 GIDA: Glucose inhibit 98.7 1E-06 2.2E-11 94.8 18.4 58 125-189 96-154 (392)
111 PTZ00058 glutathione reductase 98.7 2.8E-08 6E-13 113.7 6.9 32 1-34 61-92 (561)
112 PRK11101 glpA sn-glycerol-3-ph 98.7 8.5E-08 1.8E-12 110.4 10.9 177 1-187 19-211 (546)
113 PLN02507 glutathione reductase 98.6 4.4E-07 9.6E-12 103.4 15.6 46 337-400 317-362 (499)
114 PRK15055 anaerobic sulfite red 98.6 1.5E-08 3.2E-13 106.9 3.0 37 747-783 302-338 (344)
115 PRK07845 flavoprotein disulfid 98.6 6.1E-07 1.3E-11 101.7 15.3 45 337-399 291-335 (466)
116 TIGR01438 TGR thioredoxin and 98.6 5.3E-07 1.1E-11 102.3 14.3 47 337-400 297-343 (484)
117 COG2509 Uncharacterized FAD-de 98.6 1.1E-06 2.3E-11 93.6 15.3 67 118-190 167-233 (486)
118 PRK06116 glutathione reductase 98.6 4.7E-07 1E-11 102.3 13.4 46 337-400 282-327 (450)
119 PF13534 Fer4_17: 4Fe-4S diclu 98.6 1.2E-08 2.6E-13 80.3 0.3 61 696-769 1-61 (61)
120 PRK06115 dihydrolipoamide dehy 98.6 4.1E-07 9E-12 103.1 12.9 45 338-400 293-337 (466)
121 TIGR02910 sulfite_red_A sulfit 98.5 6.9E-08 1.5E-12 101.3 4.3 38 746-783 295-332 (334)
122 TIGR03377 glycerol3P_GlpA glyc 98.5 5.3E-07 1.1E-11 103.6 10.7 174 4-188 1-191 (516)
123 TIGR01423 trypano_reduc trypan 98.5 2.6E-07 5.7E-12 104.6 7.4 46 337-400 305-350 (486)
124 TIGR01945 rnfC electron transp 98.5 1.4E-07 2.9E-12 104.9 4.8 73 694-784 362-434 (435)
125 PF01266 DAO: FAD dependent ox 98.4 2.5E-06 5.4E-11 93.2 14.2 169 1-188 12-204 (358)
126 PF01946 Thi4: Thi4 family; PD 98.4 1.2E-06 2.5E-11 85.1 9.9 130 1-187 30-165 (230)
127 COG0644 FixC Dehydrogenases (f 98.4 1.9E-06 4E-11 95.7 13.0 58 124-187 95-152 (396)
128 PRK06912 acoL dihydrolipoamide 98.4 2.2E-06 4.9E-11 97.0 13.7 46 337-400 284-329 (458)
129 PRK05035 electron transport co 98.4 1.4E-07 3.1E-12 109.0 3.9 72 694-783 369-440 (695)
130 PRK05352 Na(+)-translocating N 98.4 2E-07 4.4E-12 102.6 4.5 73 694-784 373-447 (448)
131 PRK00941 acetyl-CoA decarbonyl 98.4 3E-07 6.5E-12 105.3 5.3 79 688-785 397-475 (781)
132 TIGR03329 Phn_aa_oxid putative 98.4 2.3E-06 4.9E-11 97.0 12.3 57 123-188 182-238 (460)
133 PRK06327 dihydrolipoamide dehy 98.4 4.1E-06 8.9E-11 95.3 14.4 46 337-400 301-346 (475)
134 KOG0405|consensus 98.4 5.8E-07 1.3E-11 91.6 6.5 81 132-220 118-205 (478)
135 PRK06370 mercuric reductase; V 98.4 2.2E-06 4.7E-11 97.3 11.7 46 337-400 288-333 (463)
136 TIGR01936 nqrA NADH:ubiquinone 98.3 5.2E-07 1.1E-11 99.1 5.6 73 694-784 372-446 (447)
137 PRK07818 dihydrolipoamide dehy 98.3 4.5E-06 9.8E-11 94.8 13.4 46 337-400 290-335 (466)
138 PRK07846 mycothione reductase; 98.3 8E-06 1.7E-10 92.1 15.0 46 337-400 279-324 (451)
139 PRK06416 dihydrolipoamide dehy 98.3 4.4E-06 9.5E-11 94.9 12.9 46 337-400 288-333 (462)
140 COG4656 RnfC Predicted NADH:ub 98.3 4.7E-07 1E-11 97.7 4.5 70 696-783 366-435 (529)
141 PTZ00153 lipoamide dehydrogena 98.3 4.5E-06 9.7E-11 97.1 12.9 32 2-33 130-161 (659)
142 TIGR03193 4hydroxCoAred 4-hydr 98.3 1.1E-06 2.3E-11 80.6 6.0 67 574-645 10-78 (148)
143 KOG1335|consensus 98.3 3E-06 6.5E-11 87.7 9.9 133 2-187 53-185 (506)
144 TIGR00314 cdhA CO dehydrogenas 98.3 4.5E-07 9.7E-12 103.8 4.3 80 685-783 389-468 (784)
145 PRK00711 D-amino acid dehydrog 98.3 7.4E-06 1.6E-10 91.8 13.3 59 123-188 200-258 (416)
146 TIGR02352 thiamin_ThiO glycine 98.3 4.5E-06 9.8E-11 90.6 11.0 60 123-189 136-195 (337)
147 cd01916 ACS_1 Acetyl-CoA synth 98.3 7.6E-07 1.6E-11 102.2 4.8 81 685-784 355-435 (731)
148 PRK05976 dihydrolipoamide dehy 98.2 4.4E-06 9.5E-11 95.0 10.7 46 336-399 296-341 (472)
149 TIGR03452 mycothione_red mycot 98.2 8.6E-06 1.9E-10 91.9 12.5 46 337-400 282-327 (452)
150 PLN02464 glycerol-3-phosphate 98.2 9.9E-06 2.1E-10 94.6 13.1 67 122-188 230-297 (627)
151 PRK12409 D-amino acid dehydrog 98.2 2.3E-05 4.9E-10 87.7 15.6 62 123-187 196-258 (410)
152 COG1143 NuoI Formate hydrogenl 98.2 2E-07 4.3E-12 88.2 -1.3 58 694-768 54-111 (172)
153 TIGR01373 soxB sarcosine oxida 98.2 7.7E-06 1.7E-10 91.3 10.7 59 124-188 183-241 (407)
154 KOG4716|consensus 98.2 3.4E-05 7.4E-10 78.6 14.0 138 1-188 32-174 (503)
155 TIGR02053 MerA mercuric reduct 98.2 5.4E-06 1.2E-10 94.1 9.5 46 337-400 283-328 (463)
156 PRK05249 soluble pyridine nucl 98.2 2.9E-05 6.3E-10 88.2 15.3 46 337-400 289-334 (461)
157 TIGR03197 MnmC_Cterm tRNA U-34 98.2 1.7E-05 3.7E-10 87.7 13.0 60 122-189 133-192 (381)
158 TIGR01350 lipoamide_DH dihydro 98.1 2E-05 4.4E-10 89.5 13.6 46 337-400 286-331 (461)
159 PRK10015 oxidoreductase; Provi 98.1 3.3E-06 7.2E-11 94.5 6.3 57 125-188 109-165 (429)
160 PRK14694 putative mercuric red 98.1 1.8E-05 3.9E-10 89.9 11.8 47 336-400 288-334 (468)
161 PF13187 Fer4_9: 4Fe-4S diclus 98.1 3.1E-07 6.8E-12 70.5 -1.8 53 696-767 1-53 (55)
162 PRK11433 aldehyde oxidoreducta 98.1 5.4E-06 1.2E-10 80.8 6.1 67 574-645 60-128 (217)
163 PF13237 Fer4_10: 4Fe-4S diclu 98.1 4.8E-07 1E-11 68.5 -1.0 48 693-765 5-52 (52)
164 COG0492 TrxB Thioredoxin reduc 98.1 0.0002 4.4E-09 75.5 18.2 58 122-188 59-116 (305)
165 COG0578 GlpA Glycerol-3-phosph 98.1 4.3E-05 9.2E-10 85.2 13.6 63 124-188 164-226 (532)
166 PF12831 FAD_oxidored: FAD dep 98.1 2.3E-06 4.9E-11 95.9 3.6 56 127-185 93-148 (428)
167 PF13746 Fer4_18: 4Fe-4S diclu 98.1 4.6E-07 1E-11 72.6 -1.6 25 746-770 44-68 (69)
168 PRK06292 dihydrolipoamide dehy 98.1 4.9E-06 1.1E-10 94.5 6.1 47 337-401 285-331 (460)
169 TIGR01320 mal_quin_oxido malat 98.0 0.00016 3.4E-09 82.0 17.6 66 122-188 176-241 (483)
170 TIGR02484 CitB CitB domain pro 98.0 8.6E-06 1.9E-10 85.8 6.8 72 690-784 9-86 (372)
171 PRK14727 putative mercuric red 98.0 1.4E-05 3E-10 91.0 9.1 46 337-400 300-345 (479)
172 PTZ00052 thioredoxin reductase 98.0 5.6E-05 1.2E-09 86.3 13.8 20 1-20 18-37 (499)
173 PRK11728 hydroxyglutarate oxid 98.0 6.7E-05 1.5E-09 83.3 13.9 57 123-187 148-204 (393)
174 PRK12266 glpD glycerol-3-phosp 98.0 7.7E-05 1.7E-09 85.4 14.5 64 123-188 154-217 (508)
175 PF12838 Fer4_7: 4Fe-4S diclus 98.0 1.6E-07 3.5E-12 71.1 -4.9 52 696-768 1-52 (52)
176 cd00207 fer2 2Fe-2S iron-sulfu 98.0 6.5E-06 1.4E-10 69.4 4.3 53 574-633 9-79 (84)
177 COG1152 CdhA CO dehydrogenase/ 98.0 6.3E-06 1.4E-10 88.9 5.0 78 685-781 390-467 (772)
178 TIGR03378 glycerol3P_GlpB glyc 98.0 5.1E-05 1.1E-09 82.8 12.0 61 123-187 262-323 (419)
179 PRK09908 xanthine dehydrogenas 98.0 1E-05 2.2E-10 75.0 5.5 65 574-644 17-83 (159)
180 PRK15033 tricarballylate utili 98.0 1E-05 2.3E-10 85.5 5.9 72 690-784 28-105 (389)
181 KOG0404|consensus 98.0 1.7E-05 3.7E-10 76.2 6.7 68 328-403 252-319 (322)
182 PRK13748 putative mercuric red 97.9 3.3E-05 7.2E-10 90.0 10.6 45 337-399 382-426 (561)
183 TIGR01377 soxA_mon sarcosine o 97.9 2.3E-05 5.1E-10 86.6 8.7 57 123-187 144-200 (380)
184 COG2080 CoxS Aerobic-type carb 97.9 1.2E-05 2.5E-10 73.7 4.9 65 574-644 12-79 (156)
185 TIGR02028 ChlP geranylgeranyl 97.9 0.0002 4.2E-09 79.6 15.0 44 357-404 267-310 (398)
186 PRK13369 glycerol-3-phosphate 97.9 2.8E-05 6.2E-10 89.0 8.2 63 123-188 154-216 (502)
187 PF14697 Fer4_21: 4Fe-4S diclu 97.9 3.3E-06 7.1E-11 65.3 0.3 49 694-766 5-53 (59)
188 TIGR03364 HpnW_proposed FAD de 97.8 8.3E-05 1.8E-09 81.7 10.8 54 123-188 144-198 (365)
189 KOG0042|consensus 97.8 5.3E-05 1.1E-09 82.1 8.6 65 123-187 223-287 (680)
190 COG0579 Predicted dehydrogenas 97.8 0.00026 5.5E-09 77.5 13.5 61 122-187 151-211 (429)
191 TIGR03198 pucE xanthine dehydr 97.8 3.2E-05 7E-10 71.6 5.6 65 574-644 12-79 (151)
192 PF00111 Fer2: 2Fe-2S iron-sul 97.8 3.1E-05 6.7E-10 64.2 4.5 41 573-620 6-48 (78)
193 PRK07251 pyridine nucleotide-d 97.7 8.2E-05 1.8E-09 83.8 8.9 32 1-32 16-47 (438)
194 PRK05257 malate:quinone oxidor 97.7 0.00029 6.2E-09 80.0 13.2 65 123-188 182-247 (494)
195 PRK01747 mnmC bifunctional tRN 97.7 0.0003 6.4E-09 83.5 13.6 59 123-189 407-465 (662)
196 TIGR02023 BchP-ChlP geranylger 97.7 0.015 3.3E-07 64.4 26.1 62 124-188 92-156 (388)
197 PLN02697 lycopene epsilon cycl 97.7 0.0014 3E-08 74.7 17.6 58 124-188 192-249 (529)
198 COG0665 DadA Glycine/D-amino a 97.7 0.00023 5.1E-09 78.8 11.3 170 1-188 17-213 (387)
199 PRK11259 solA N-methyltryptoph 97.6 0.00093 2E-08 73.7 14.6 58 123-188 148-205 (376)
200 TIGR00403 ndhI NADH-plastoquin 97.6 2.1E-05 4.5E-10 76.4 1.0 58 693-767 60-117 (183)
201 KOG3256|consensus 97.6 9.2E-06 2E-10 73.2 -1.6 57 694-768 110-166 (212)
202 CHL00134 petF ferredoxin; Vali 97.6 8.7E-05 1.9E-09 64.4 4.4 39 574-619 16-54 (99)
203 TIGR02008 fdx_plant ferredoxin 97.5 0.00011 2.4E-09 63.5 4.9 38 575-619 15-52 (97)
204 PLN00093 geranylgeranyl diphos 97.5 0.018 3.9E-07 64.8 23.4 44 357-404 306-349 (450)
205 PRK05888 NADH dehydrogenase su 97.5 2.3E-05 4.9E-10 75.2 -0.5 57 694-768 57-113 (164)
206 PRK10713 2Fe-2S ferredoxin Yfa 97.4 0.00011 2.4E-09 61.6 3.6 40 576-621 12-52 (84)
207 TIGR02176 pyruv_ox_red pyruvat 97.4 3.3E-05 7.2E-10 95.4 -0.0 71 694-767 682-754 (1165)
208 PRK13984 putative oxidoreducta 97.4 0.00012 2.6E-09 85.9 4.5 33 751-783 184-216 (604)
209 PRK10157 putative oxidoreducta 97.4 0.00068 1.5E-08 76.0 10.1 57 124-187 108-164 (428)
210 PTZ00383 malate:quinone oxidor 97.4 0.0013 2.7E-08 74.6 12.2 59 123-188 210-274 (497)
211 PRK06273 ferredoxin; Provision 97.4 3.2E-05 6.9E-10 73.4 -1.0 59 694-767 48-106 (165)
212 PRK13339 malate:quinone oxidor 97.3 0.0067 1.5E-07 68.6 17.0 66 122-188 182-248 (497)
213 PRK14028 pyruvate ferredoxin o 97.3 7.4E-05 1.6E-09 79.8 1.1 59 694-767 246-304 (312)
214 TIGR01971 NuoI NADH-quinone ox 97.3 3.2E-05 7E-10 70.3 -1.4 57 694-768 42-98 (122)
215 COG1453 Predicted oxidoreducta 97.3 0.00039 8.6E-09 72.4 6.1 35 750-784 349-383 (391)
216 CHL00065 psaC photosystem I su 97.3 6.1E-05 1.3E-09 62.9 0.1 55 694-768 8-62 (81)
217 PRK02651 photosystem I subunit 97.3 4.8E-05 1.1E-09 63.5 -0.6 55 694-768 8-62 (81)
218 TIGR03140 AhpF alkyl hydropero 97.3 0.00021 4.5E-09 82.1 4.3 60 121-187 264-323 (515)
219 TIGR03048 PS_I_psaC photosyste 97.3 3.7E-05 7.9E-10 64.0 -1.4 56 694-769 7-62 (80)
220 PRK08348 NADH-plastoquinone ox 97.3 6.1E-05 1.3E-09 68.1 -0.2 51 692-768 39-89 (120)
221 PLN02593 adrenodoxin-like ferr 97.3 0.00046 9.9E-09 61.7 5.4 39 574-619 12-51 (117)
222 TIGR03313 Se_sel_red_Mo probab 97.3 0.00036 7.8E-09 84.7 6.3 65 574-644 7-74 (951)
223 COG0633 Fdx Ferredoxin [Energy 97.2 0.00042 9.2E-09 60.4 4.9 37 577-620 17-53 (102)
224 TIGR02936 fdxN_nitrog ferredox 97.2 5E-05 1.1E-09 65.0 -0.8 18 693-710 19-36 (91)
225 PRK15317 alkyl hydroperoxide r 97.2 0.00096 2.1E-08 76.8 9.3 60 121-187 263-322 (517)
226 PTZ00038 ferredoxin; Provision 97.2 0.00034 7.4E-09 67.2 4.4 38 575-619 107-144 (191)
227 CHL00014 ndhI NADH dehydrogena 97.2 9.6E-05 2.1E-09 70.9 0.6 57 694-767 58-114 (167)
228 PRK08222 hydrogenase 4 subunit 97.2 5.8E-05 1.3E-09 73.3 -1.0 52 694-767 37-88 (181)
229 PRK06991 ferredoxin; Provision 97.2 5.2E-05 1.1E-09 77.8 -1.6 47 694-767 84-130 (270)
230 PRK06126 hypothetical protein; 97.2 0.0054 1.2E-07 71.3 14.9 62 125-188 127-189 (545)
231 KOG2844|consensus 97.2 0.0023 4.9E-08 71.5 10.8 59 122-187 185-243 (856)
232 TIGR01790 carotene-cycl lycope 97.2 0.008 1.7E-07 66.6 15.4 58 123-187 84-141 (388)
233 PRK05113 electron transport co 97.1 0.00011 2.3E-09 72.0 0.2 49 693-768 112-160 (191)
234 PLN00071 photosystem I subunit 97.1 7.7E-05 1.7E-09 62.3 -1.0 55 694-768 8-62 (81)
235 PRK09477 napH quinol dehydroge 97.1 0.00012 2.6E-09 76.3 0.1 52 694-768 207-258 (271)
236 TIGR02007 fdx_isc ferredoxin, 97.1 0.00072 1.6E-08 59.9 5.0 39 574-619 15-54 (110)
237 KOG2820|consensus 97.1 0.0039 8.5E-08 64.3 10.9 65 124-193 153-218 (399)
238 PLN03136 Ferredoxin; Provision 97.1 0.0006 1.3E-08 63.1 4.6 38 575-619 66-103 (148)
239 PRK09625 porD pyruvate flavodo 97.1 0.00011 2.3E-09 67.5 -0.4 49 693-768 57-105 (133)
240 TIGR02494 PFLE_PFLC glycyl-rad 97.1 0.00016 3.5E-09 76.8 0.9 65 692-779 45-117 (295)
241 COG1146 Ferredoxin [Energy pro 97.1 0.00013 2.8E-09 58.6 -0.2 50 694-767 7-56 (68)
242 TIGR02163 napH_ ferredoxin-typ 97.1 0.00014 3E-09 75.0 0.1 51 694-768 200-250 (255)
243 PLN02463 lycopene beta cyclase 97.0 0.037 8E-07 62.1 19.1 58 123-188 113-170 (447)
244 TIGR02512 Fe_only_hydrog hydro 97.0 0.00016 3.5E-09 79.1 0.3 63 693-769 5-67 (374)
245 PF13484 Fer4_16: 4Fe-4S doubl 97.0 7.1E-05 1.5E-09 60.0 -1.9 17 696-712 1-17 (67)
246 COG1145 NapF Ferredoxin [Energ 97.0 0.00024 5.2E-09 61.8 1.1 52 694-768 28-79 (99)
247 PRK09626 oorD 2-oxoglutarate-a 97.0 0.00018 3.9E-09 63.0 0.1 18 693-710 14-31 (103)
248 PRK09624 porD pyuvate ferredox 96.9 0.00023 5E-09 62.4 0.1 48 694-768 50-97 (105)
249 PRK12769 putative oxidoreducta 96.9 0.006 1.3E-07 72.3 12.0 38 357-403 615-652 (654)
250 PRK12387 formate hydrogenlyase 96.9 0.00017 3.8E-09 70.2 -1.0 52 694-767 37-88 (180)
251 PF12797 Fer4_2: 4Fe-4S bindin 96.9 0.00023 5E-09 42.1 -0.2 17 693-709 6-22 (22)
252 PRK13512 coenzyme A disulfide 96.9 0.0012 2.7E-08 74.3 5.4 50 135-188 69-118 (438)
253 PRK09800 putative hypoxanthine 96.8 0.0012 2.5E-08 80.3 5.0 65 574-644 11-78 (956)
254 TIGR00402 napF ferredoxin-type 96.8 0.00017 3.7E-09 62.9 -1.5 51 694-769 33-83 (101)
255 PF12798 Fer4_3: 4Fe-4S bindin 96.8 0.00043 9.3E-09 37.2 0.6 15 754-768 1-15 (15)
256 PRK06184 hypothetical protein; 96.8 0.019 4E-07 66.0 14.6 60 125-188 110-169 (502)
257 PRK09897 hypothetical protein; 96.8 0.022 4.7E-07 65.1 14.6 56 126-187 109-166 (534)
258 PRK08764 ferredoxin; Provision 96.8 0.00045 9.8E-09 63.7 0.8 48 694-768 84-131 (135)
259 TIGR01944 rnfB electron transp 96.7 0.00033 7.3E-09 67.0 -0.2 49 693-768 111-159 (165)
260 PRK06185 hypothetical protein; 96.7 0.011 2.4E-07 66.0 11.9 62 124-188 108-170 (407)
261 TIGR02032 GG-red-SF geranylger 96.7 0.0083 1.8E-07 63.4 10.3 59 124-188 91-149 (295)
262 PRK06834 hypothetical protein; 96.7 0.016 3.5E-07 66.0 13.1 57 125-188 101-157 (488)
263 KOG2415|consensus 96.6 0.0028 6.2E-08 66.8 5.7 66 124-189 183-258 (621)
264 PF13738 Pyr_redox_3: Pyridine 96.6 0.0053 1.1E-07 61.1 7.5 60 122-188 80-139 (203)
265 TIGR02912 sulfite_red_C sulfit 96.6 0.00023 5E-09 76.0 -2.7 49 694-767 168-216 (314)
266 PRK09623 vorD 2-ketoisovalerat 96.6 0.0005 1.1E-08 60.4 -0.2 49 693-768 49-97 (105)
267 TIGR02179 PorD_KorD 2-oxoacid: 96.6 0.00059 1.3E-08 56.5 0.1 48 694-768 24-71 (78)
268 PRK05713 hypothetical protein; 96.6 0.0024 5.2E-08 68.4 4.7 54 574-634 8-79 (312)
269 PLN02985 squalene monooxygenas 96.6 0.019 4.1E-07 65.8 12.3 62 125-189 148-210 (514)
270 PF12837 Fer4_6: 4Fe-4S bindin 96.5 0.00047 1E-08 42.4 -0.5 18 693-710 5-22 (24)
271 COG1149 MinD superfamily P-loo 96.5 0.00052 1.1E-08 68.9 -0.4 47 694-767 68-114 (284)
272 PRK10194 ferredoxin-type prote 96.5 0.00038 8.3E-09 66.7 -1.4 17 694-710 33-49 (163)
273 COG1144 Pyruvate:ferredoxin ox 96.5 0.0005 1.1E-08 56.3 -0.8 47 694-766 34-80 (91)
274 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.016 3.4E-07 64.1 10.6 58 124-188 106-164 (385)
275 COG2768 Uncharacterized Fe-S c 96.4 0.001 2.2E-08 67.1 0.9 46 694-768 192-237 (354)
276 PRK06847 hypothetical protein; 96.4 0.038 8.2E-07 60.9 13.3 60 123-189 106-165 (375)
277 PRK14989 nitrite reductase sub 96.4 0.03 6.4E-07 67.9 13.3 55 125-184 188-242 (847)
278 TIGR03311 Se_dep_Molyb_1 selen 96.4 0.0031 6.6E-08 76.2 4.7 64 576-645 9-75 (848)
279 PRK09326 F420H2 dehydrogenase 96.4 0.00077 1.7E-08 72.8 -0.3 57 694-766 11-67 (341)
280 PRK08773 2-octaprenyl-3-methyl 96.4 0.018 4E-07 63.8 10.7 58 124-188 113-170 (392)
281 TIGR02060 aprB adenosine phosp 96.4 0.00064 1.4E-08 62.0 -0.8 50 694-768 7-61 (132)
282 TIGR02963 xanthine_xdhA xanthi 96.4 0.004 8.7E-08 69.9 5.2 65 574-644 9-86 (467)
283 TIGR02745 ccoG_rdxA_fixG cytoc 96.4 0.0012 2.5E-08 72.8 0.8 40 694-766 230-269 (434)
284 KOG2403|consensus 96.3 0.0058 1.3E-07 67.0 6.0 242 147-402 233-474 (642)
285 PRK08318 dihydropyrimidine deh 96.3 0.0012 2.5E-08 73.8 0.8 17 693-709 340-356 (420)
286 KOG1298|consensus 96.3 0.013 2.7E-07 61.6 8.1 86 125-218 148-235 (509)
287 PF12800 Fer4_4: 4Fe-4S bindin 96.3 0.0018 3.9E-08 36.2 1.0 15 695-709 2-16 (17)
288 PRK13977 myosin-cross-reactive 96.3 0.013 2.8E-07 66.5 8.7 67 124-190 226-296 (576)
289 COG3634 AhpF Alkyl hydroperoxi 96.3 0.0018 3.9E-08 66.7 1.7 61 122-187 264-325 (520)
290 PRK07364 2-octaprenyl-6-methox 96.3 0.032 7E-07 62.4 12.0 60 125-188 122-182 (415)
291 COG0445 GidA Flavin-dependent 96.3 0.0066 1.4E-07 66.8 5.8 57 125-187 101-158 (621)
292 PRK09898 hypothetical protein; 96.2 0.002 4.4E-08 64.3 1.8 45 694-768 153-197 (208)
293 PRK08244 hypothetical protein; 96.2 0.048 1E-06 62.5 13.3 60 125-188 101-160 (493)
294 PF01494 FAD_binding_3: FAD bi 96.1 0.018 3.9E-07 62.6 8.8 63 124-188 111-173 (356)
295 TIGR02700 flavo_MJ0208 archaeo 96.1 0.0015 3.3E-08 66.4 0.4 47 694-768 147-193 (234)
296 TIGR03224 benzo_boxA benzoyl-C 96.1 0.0017 3.6E-08 72.0 0.5 47 693-767 8-54 (411)
297 COG0437 HybA Fe-S-cluster-cont 96.1 0.0022 4.7E-08 62.4 1.2 58 692-779 97-163 (203)
298 PTZ00490 Ferredoxin superfamil 96.1 0.0092 2E-07 54.9 5.1 62 574-641 47-134 (143)
299 PRK12775 putative trifunctiona 96.1 0.0091 2E-07 73.7 6.7 41 588-628 198-238 (1006)
300 PRK09564 coenzyme A disulfide 96.0 0.047 1E-06 61.7 11.8 55 123-185 190-244 (444)
301 COG0654 UbiH 2-polyprenyl-6-me 96.0 0.036 7.7E-07 61.4 10.2 59 124-188 104-163 (387)
302 PRK07190 hypothetical protein; 96.0 0.071 1.5E-06 60.8 12.8 56 125-187 110-165 (487)
303 PRK06183 mhpA 3-(3-hydroxyphen 96.0 0.07 1.5E-06 61.9 13.0 61 125-188 114-175 (538)
304 PRK07609 CDP-6-deoxy-delta-3,4 95.9 0.0075 1.6E-07 65.5 4.6 51 576-633 13-83 (339)
305 PRK08243 4-hydroxybenzoate 3-m 95.9 0.12 2.5E-06 57.4 14.0 61 125-188 104-164 (392)
306 PRK07608 ubiquinone biosynthes 95.9 0.083 1.8E-06 58.4 12.8 57 124-188 111-168 (388)
307 TIGR03478 DMSO_red_II_bet DMSO 95.9 0.0025 5.5E-08 65.9 0.5 46 694-769 161-215 (321)
308 PF12800 Fer4_4: 4Fe-4S bindin 95.9 0.0037 8.1E-08 34.9 0.9 16 752-767 2-17 (17)
309 COG2878 Predicted NADH:ubiquin 95.8 0.0028 6.1E-08 59.1 0.6 49 694-769 114-162 (198)
310 PRK10882 hydrogenase 2 protein 95.8 0.0069 1.5E-07 64.2 3.6 62 694-783 142-220 (328)
311 PRK05714 2-octaprenyl-3-methyl 95.8 0.053 1.1E-06 60.4 11.0 58 124-188 112-169 (405)
312 PRK12778 putative bifunctional 95.8 0.0093 2E-07 71.9 5.2 44 586-629 196-239 (752)
313 PRK07333 2-octaprenyl-6-methox 95.8 0.055 1.2E-06 60.2 11.0 58 124-188 111-168 (403)
314 PRK10684 HCP oxidoreductase, N 95.8 0.0079 1.7E-07 65.0 4.0 36 577-619 260-295 (332)
315 TIGR02160 PA_CoA_Oxy5 phenylac 95.8 0.0088 1.9E-07 65.3 4.3 36 577-619 277-312 (352)
316 COG1251 NirB NAD(P)H-nitrite r 95.8 0.075 1.6E-06 60.9 11.5 60 121-189 56-115 (793)
317 TIGR03287 methan_mark_16 putat 95.7 0.0044 9.5E-08 66.4 1.4 42 694-766 301-344 (391)
318 PF12837 Fer4_6: 4Fe-4S bindin 95.7 0.0031 6.8E-08 38.7 0.1 18 751-768 6-23 (24)
319 TIGR00276 iron-sulfur cluster 95.6 0.0072 1.6E-07 63.0 2.8 68 694-769 158-226 (282)
320 TIGR00397 mauM_napG MauM/NapG 95.6 0.0024 5.2E-08 63.7 -0.8 17 694-710 52-68 (213)
321 TIGR01660 narH nitrate reducta 95.6 0.0024 5.2E-08 68.8 -1.0 19 752-770 241-268 (492)
322 PF00037 Fer4: 4Fe-4S binding 95.5 0.0025 5.5E-08 39.3 -0.6 17 694-710 5-21 (24)
323 PRK05464 Na(+)-translocating N 95.5 0.015 3.3E-07 64.7 4.9 53 575-634 46-119 (409)
324 COG1148 HdrA Heterodisulfide r 95.5 0.0049 1.1E-07 66.5 0.9 45 694-769 560-604 (622)
325 PRK06617 2-octaprenyl-6-methox 95.5 0.14 3E-06 56.4 12.4 57 124-188 104-161 (374)
326 PLN02172 flavin-containing mon 95.5 0.085 1.9E-06 59.5 10.8 63 122-187 109-173 (461)
327 TIGR03143 AhpF_homolog putativ 95.4 0.035 7.7E-07 64.4 7.8 53 337-406 260-312 (555)
328 TIGR01984 UbiH 2-polyprenyl-6- 95.4 0.084 1.8E-06 58.3 10.6 57 124-187 105-162 (382)
329 KOG2853|consensus 95.4 0.16 3.4E-06 52.8 11.2 63 123-188 242-321 (509)
330 PRK07538 hypothetical protein; 95.4 0.14 3.1E-06 57.2 12.3 63 124-188 102-166 (413)
331 PF00037 Fer4: 4Fe-4S binding 95.4 0.0067 1.4E-07 37.4 0.8 17 752-768 6-22 (24)
332 PRK09126 hypothetical protein; 95.4 0.19 4E-06 55.7 13.1 57 125-188 111-168 (392)
333 PRK08849 2-octaprenyl-3-methyl 95.4 0.14 2.9E-06 56.7 11.9 57 125-188 111-168 (384)
334 TIGR03336 IOR_alpha indolepyru 95.3 0.0071 1.5E-07 70.6 1.6 43 694-767 549-593 (595)
335 PRK09853 putative selenate red 95.2 0.0047 1E-07 74.6 -0.3 57 693-770 884-944 (1019)
336 PF12798 Fer4_3: 4Fe-4S bindin 95.2 0.0038 8.1E-08 33.6 -0.5 14 697-710 1-14 (15)
337 PRK11872 antC anthranilate dio 95.2 0.018 3.9E-07 62.4 4.1 38 575-619 15-52 (340)
338 TIGR03149 cyt_nit_nrfC cytochr 95.2 0.0083 1.8E-07 60.6 1.3 17 694-710 124-140 (225)
339 KOG2852|consensus 95.2 0.13 2.8E-06 52.2 9.6 66 124-192 147-213 (380)
340 TIGR01941 nqrF NADH:ubiquinone 95.2 0.025 5.5E-07 62.8 5.3 53 575-634 42-115 (405)
341 PRK08020 ubiF 2-octaprenyl-3-m 95.1 0.13 2.8E-06 57.0 10.9 58 124-188 112-170 (391)
342 COG1142 HycB Fe-S-cluster-cont 95.1 0.0047 1E-07 57.9 -0.5 19 694-712 81-99 (165)
343 PRK12831 putative oxidoreducta 95.1 0.026 5.6E-07 64.0 5.2 49 338-404 413-462 (464)
344 TIGR01660 narH nitrate reducta 95.1 0.0066 1.4E-07 65.5 0.3 49 694-768 180-230 (492)
345 PRK13795 hypothetical protein; 95.1 0.0038 8.2E-08 73.0 -1.6 49 694-768 580-628 (636)
346 PRK13984 putative oxidoreducta 95.0 0.024 5.2E-07 66.7 4.9 48 337-403 555-602 (604)
347 PRK14993 tetrathionate reducta 95.0 0.0071 1.5E-07 61.7 0.4 46 694-769 129-183 (244)
348 TIGR03478 DMSO_red_II_bet DMSO 95.0 0.0046 1E-07 64.1 -1.1 51 693-769 127-179 (321)
349 PRK08163 salicylate hydroxylas 94.9 0.27 5.9E-06 54.5 12.8 59 124-189 109-168 (396)
350 PRK10882 hydrogenase 2 protein 94.9 0.0085 1.8E-07 63.6 0.6 51 694-770 109-161 (328)
351 PRK11445 putative oxidoreducta 94.9 0.32 6.9E-06 53.0 12.8 59 125-188 100-158 (351)
352 TIGR01316 gltA glutamate synth 94.9 0.03 6.4E-07 63.3 4.8 47 338-402 403-449 (449)
353 KOG1346|consensus 94.8 0.01 2.2E-07 62.7 0.8 57 336-404 464-522 (659)
354 PRK07045 putative monooxygenas 94.8 0.34 7.4E-06 53.6 13.1 59 125-188 107-166 (388)
355 COG4231 Indolepyruvate ferredo 94.8 0.0077 1.7E-07 67.4 -0.1 51 691-769 573-625 (640)
356 TIGR01582 FDH-beta formate deh 94.8 0.015 3.3E-07 60.4 2.1 59 694-782 123-194 (283)
357 TIGR01582 FDH-beta formate deh 94.8 0.0074 1.6E-07 62.7 -0.3 50 694-770 90-142 (283)
358 PRK09476 napG quinol dehydroge 94.7 0.0067 1.4E-07 62.3 -0.7 16 752-767 184-199 (254)
359 TIGR00397 mauM_napG MauM/NapG 94.7 0.0088 1.9E-07 59.7 0.2 16 752-767 175-190 (213)
360 TIGR03294 FrhG coenzyme F420 h 94.7 0.0067 1.4E-07 61.3 -0.8 50 694-771 173-222 (228)
361 PRK10330 formate dehydrogenase 94.7 0.0086 1.9E-07 58.5 -0.0 17 694-710 86-102 (181)
362 PF13247 Fer4_11: 4Fe-4S diclu 94.7 0.0061 1.3E-07 52.5 -1.0 18 693-710 38-55 (98)
363 PRK09476 napG quinol dehydroge 94.7 0.0067 1.5E-07 62.2 -0.9 17 694-710 58-74 (254)
364 TIGR01317 GOGAT_sm_gam glutama 94.7 0.05 1.1E-06 62.0 6.0 58 339-405 424-481 (485)
365 PRK07118 ferredoxin; Validated 94.6 0.0058 1.3E-07 63.6 -1.5 17 694-710 167-183 (280)
366 TIGR03149 cyt_nit_nrfC cytochr 94.6 0.0085 1.8E-07 60.5 -0.4 18 694-711 91-110 (225)
367 PRK08132 FAD-dependent oxidore 94.6 0.36 7.8E-06 56.1 13.0 60 125-188 126-186 (547)
368 TIGR03315 Se_ygfK putative sel 94.6 0.0077 1.7E-07 73.1 -0.9 17 753-769 922-938 (1012)
369 PRK07494 2-octaprenyl-6-methox 94.5 0.31 6.8E-06 53.8 12.0 57 124-188 111-168 (388)
370 TIGR02360 pbenz_hydroxyl 4-hyd 94.5 0.42 9E-06 53.0 12.8 62 124-188 103-164 (390)
371 COG2221 DsrA Dissimilatory sul 94.5 0.0074 1.6E-07 62.1 -1.0 47 694-768 171-217 (317)
372 PRK05335 tRNA (uracil-5-)-meth 94.5 0.11 2.5E-06 57.0 7.9 64 333-406 301-367 (436)
373 KOG1336|consensus 94.5 0.037 8E-07 60.2 4.0 69 319-397 310-379 (478)
374 PRK10194 ferredoxin-type prote 94.4 0.0077 1.7E-07 57.7 -1.0 17 752-768 138-154 (163)
375 COG3894 Uncharacterized metal- 94.4 0.035 7.6E-07 60.1 3.8 56 580-643 15-89 (614)
376 PRK08013 oxidoreductase; Provi 94.4 0.3 6.6E-06 54.3 11.6 57 125-188 112-169 (400)
377 PF13454 NAD_binding_9: FAD-NA 94.4 0.17 3.7E-06 48.0 8.2 42 137-185 113-155 (156)
378 PRK07588 hypothetical protein; 94.4 0.32 6.9E-06 53.9 11.5 57 125-189 104-160 (391)
379 PRK10262 thioredoxin reductase 94.3 0.034 7.4E-07 59.8 3.5 57 337-405 261-317 (321)
380 KOG2960|consensus 94.3 0.1 2.2E-06 50.3 6.2 44 357-402 274-317 (328)
381 PF12797 Fer4_2: 4Fe-4S bindin 94.1 0.017 3.8E-07 34.3 0.4 16 751-766 7-22 (22)
382 COG1148 HdrA Heterodisulfide r 94.1 0.014 3E-07 63.2 -0.0 62 695-767 224-286 (622)
383 TIGR02486 RDH reductive dehalo 94.1 0.017 3.7E-07 61.2 0.6 26 756-781 268-293 (314)
384 PRK07236 hypothetical protein; 94.0 0.62 1.4E-05 51.5 12.8 56 125-189 101-156 (386)
385 TIGR02462 pyranose_ox pyranose 93.9 0.14 3.1E-06 58.5 7.7 52 137-188 227-280 (544)
386 PRK12778 putative bifunctional 93.9 0.065 1.4E-06 64.7 5.2 39 357-404 713-751 (752)
387 PRK11749 dihydropyrimidine deh 93.9 0.072 1.6E-06 60.4 5.3 51 337-405 403-454 (457)
388 PRK05732 2-octaprenyl-6-methox 93.8 0.4 8.8E-06 53.1 11.1 57 125-188 113-170 (395)
389 PRK12769 putative oxidoreducta 93.8 0.011 2.5E-07 70.0 -1.5 19 693-711 8-26 (654)
390 TIGR02951 DMSO_dmsB DMSO reduc 93.7 0.028 6.1E-07 53.7 1.3 17 694-710 94-110 (161)
391 PRK10330 formate dehydrogenase 93.7 0.0064 1.4E-07 59.4 -3.3 18 693-710 8-25 (181)
392 TIGR02969 mam_aldehyde_ox alde 93.7 0.062 1.3E-06 68.2 4.5 62 577-644 15-89 (1330)
393 TIGR01292 TRX_reduct thioredox 93.7 0.066 1.4E-06 56.7 4.2 57 123-187 56-112 (300)
394 PRK12810 gltD glutamate syntha 93.6 0.092 2E-06 59.7 5.5 40 357-405 428-467 (471)
395 TIGR03143 AhpF_homolog putativ 93.6 0.43 9.4E-06 55.5 11.1 57 123-188 59-115 (555)
396 TIGR02730 carot_isom carotene 93.6 0.24 5.3E-06 56.7 9.0 58 124-187 229-286 (493)
397 PRK07118 ferredoxin; Validated 93.5 0.016 3.4E-07 60.5 -0.8 48 694-769 212-259 (280)
398 PLN00192 aldehyde oxidase 93.5 0.082 1.8E-06 67.2 5.2 84 574-663 14-115 (1344)
399 PF00732 GMC_oxred_N: GMC oxid 93.4 0.27 5.9E-06 52.1 8.4 59 129-187 197-258 (296)
400 TIGR02733 desat_CrtD C-3',4' d 93.3 0.25 5.4E-06 56.6 8.5 63 123-186 231-293 (492)
401 cd07030 RNAP_D D subunit of Ar 93.3 0.022 4.8E-07 59.0 -0.2 47 694-767 168-214 (259)
402 PRK12771 putative glutamate sy 93.3 0.023 4.9E-07 66.3 -0.2 16 752-767 541-556 (564)
403 PRK08850 2-octaprenyl-6-methox 93.1 0.9 2E-05 50.6 12.4 57 125-188 112-169 (405)
404 PRK09898 hypothetical protein; 93.1 0.023 5.1E-07 56.7 -0.4 50 694-769 120-171 (208)
405 TIGR02731 phytoene_desat phyto 93.0 0.31 6.7E-06 55.2 8.6 62 124-185 213-274 (453)
406 PRK00783 DNA-directed RNA poly 93.0 0.015 3.2E-07 60.4 -2.1 47 694-767 168-214 (263)
407 PRK08010 pyridine nucleotide-d 93.0 0.087 1.9E-06 59.5 3.9 46 337-400 271-316 (441)
408 PRK04965 NADH:flavorubredoxin 92.8 0.097 2.1E-06 57.7 3.9 50 337-400 252-301 (377)
409 PRK09754 phenylpropionate diox 92.7 0.099 2.1E-06 58.1 3.9 46 135-189 69-114 (396)
410 PRK12779 putative bifunctional 92.7 0.16 3.4E-06 62.4 5.9 40 356-404 589-628 (944)
411 PRK12770 putative glutamate sy 92.7 0.14 3.1E-06 55.8 5.0 47 338-402 303-349 (352)
412 PRK12809 putative oxidoreducta 92.7 0.08 1.7E-06 62.6 3.2 28 752-779 208-238 (639)
413 PRK14993 tetrathionate reducta 92.6 0.018 3.9E-07 58.8 -2.0 49 694-769 97-147 (244)
414 TIGR02745 ccoG_rdxA_fixG cytoc 92.6 0.055 1.2E-06 59.8 1.5 21 751-771 230-250 (434)
415 PRK12814 putative NADPH-depend 92.5 0.2 4.4E-06 59.3 6.3 41 356-405 463-503 (652)
416 PF06039 Mqo: Malate:quinone o 92.3 0.42 9.2E-06 52.4 7.8 63 124-187 181-244 (488)
417 PRK06475 salicylate hydroxylas 92.3 1.6 3.5E-05 48.5 12.8 62 124-189 107-169 (400)
418 PRK12775 putative trifunctiona 92.2 0.21 4.5E-06 62.0 6.1 43 355-406 716-758 (1006)
419 PRK12809 putative oxidoreducta 92.2 0.18 3.9E-06 59.6 5.3 41 356-405 597-637 (639)
420 PRK06753 hypothetical protein; 92.2 1.1 2.5E-05 49.0 11.4 54 125-187 99-152 (373)
421 PTZ00367 squalene epoxidase; P 92.1 1.2 2.5E-05 51.8 11.6 63 125-189 132-221 (567)
422 COG1600 Uncharacterized Fe-S p 92.1 0.081 1.8E-06 55.9 2.0 26 695-720 185-210 (337)
423 TIGR01318 gltD_gamma_fam gluta 92.0 0.19 4.1E-06 57.1 5.1 37 357-402 429-465 (467)
424 TIGR01810 betA choline dehydro 92.0 0.46 9.9E-06 55.0 8.3 57 129-187 198-255 (532)
425 TIGR02734 crtI_fam phytoene de 92.0 0.59 1.3E-05 53.7 9.1 57 123-185 218-274 (502)
426 PRK05868 hypothetical protein; 91.8 3.4 7.3E-05 45.4 14.5 57 125-189 106-162 (372)
427 PTZ00318 NADH dehydrogenase-li 91.8 0.27 5.8E-06 55.2 5.9 57 337-405 294-350 (424)
428 TIGR02066 dsrB sulfite reducta 91.6 0.046 9.9E-07 58.7 -0.5 17 751-767 213-229 (341)
429 TIGR03169 Nterm_to_SelD pyridi 91.6 0.21 4.6E-06 54.7 4.7 56 337-405 257-313 (364)
430 PRK02106 choline dehydrogenase 91.5 0.34 7.4E-06 56.4 6.6 50 136-187 213-262 (560)
431 TIGR01372 soxA sarcosine oxida 91.4 0.31 6.8E-06 60.6 6.4 70 571-641 16-95 (985)
432 TIGR02951 DMSO_dmsB DMSO reduc 91.2 0.05 1.1E-06 52.0 -0.6 18 694-711 61-80 (161)
433 PLN02927 antheraxanthin epoxid 91.2 2.2 4.9E-05 50.1 12.7 55 125-189 195-250 (668)
434 PRK05352 Na(+)-translocating N 90.7 0.15 3.2E-06 56.9 2.4 30 750-779 372-401 (448)
435 TIGR01372 soxA sarcosine oxida 90.7 1.2 2.5E-05 55.6 10.4 38 357-404 436-473 (985)
436 COG0437 HybA Fe-S-cluster-cont 90.6 0.042 9.2E-07 53.6 -1.7 52 694-771 66-119 (203)
437 PF13746 Fer4_18: 4Fe-4S diclu 90.6 0.087 1.9E-06 42.2 0.4 18 693-710 48-65 (69)
438 PRK00054 dihydroorotate dehydr 90.6 0.12 2.5E-06 53.4 1.4 44 586-629 196-239 (250)
439 PRK12771 putative glutamate sy 90.5 0.33 7.2E-06 56.6 5.2 41 356-405 406-446 (564)
440 COG3075 GlpB Anaerobic glycero 90.4 0.39 8.4E-06 49.9 4.9 61 123-187 257-317 (421)
441 KOG3256|consensus 90.4 0.082 1.8E-06 48.3 0.1 18 694-711 149-166 (212)
442 PRK09853 putative selenate red 90.2 0.31 6.8E-06 59.4 4.7 47 338-402 795-841 (1019)
443 TIGR01936 nqrA NADH:ubiquinone 90.2 0.17 3.8E-06 56.1 2.4 29 751-779 372-400 (447)
444 PRK06996 hypothetical protein; 90.0 2.5 5.3E-05 47.0 11.5 59 124-186 115-173 (398)
445 PLN02612 phytoene desaturase 89.9 1 2.2E-05 52.5 8.5 57 124-185 308-364 (567)
446 TIGR02374 nitri_red_nirB nitri 89.8 0.3 6.4E-06 59.2 4.1 46 134-188 64-109 (785)
447 PF13247 Fer4_11: 4Fe-4S diclu 89.8 0.027 5.8E-07 48.5 -3.4 50 694-769 6-57 (98)
448 COG1143 NuoI Formate hydrogenl 89.7 0.11 2.5E-06 49.5 0.3 19 694-712 94-112 (172)
449 PLN02906 xanthine dehydrogenas 89.6 0.26 5.6E-06 62.7 3.6 56 584-644 2-69 (1319)
450 PRK07208 hypothetical protein; 89.6 1.3 2.8E-05 50.6 9.0 62 124-186 218-279 (479)
451 PF13187 Fer4_9: 4Fe-4S diclus 89.4 0.14 3.1E-06 38.8 0.7 17 753-769 1-17 (55)
452 COG3075 GlpB Anaerobic glycero 89.4 0.14 3.1E-06 52.9 0.9 62 335-403 357-418 (421)
453 COG1142 HycB Fe-S-cluster-cont 89.4 0.12 2.6E-06 48.6 0.3 18 752-769 82-99 (165)
454 TIGR01989 COQ6 Ubiquinone bios 89.1 4.4 9.5E-05 45.6 12.7 60 124-188 117-184 (437)
455 KOG2311|consensus 88.8 0.79 1.7E-05 50.0 5.9 56 126-187 126-186 (679)
456 PF13450 NAD_binding_8: NAD(P) 88.7 0.31 6.6E-06 39.0 2.2 27 1-27 9-35 (68)
457 COG1233 Phytoene dehydrogenase 88.7 0.81 1.8E-05 52.2 6.4 57 123-185 223-279 (487)
458 PF14697 Fer4_21: 4Fe-4S diclu 88.6 0.2 4.3E-06 38.7 1.0 16 694-709 38-53 (59)
459 PLN02852 ferredoxin-NADP+ redu 88.3 0.46 1E-05 53.8 4.0 57 339-404 367-423 (491)
460 PRK08294 phenol 2-monooxygenas 88.2 7.5 0.00016 46.0 14.2 64 125-188 142-211 (634)
461 PF13237 Fer4_10: 4Fe-4S diclu 88.0 0.11 2.3E-06 39.0 -0.9 15 694-708 38-52 (52)
462 PF00743 FMO-like: Flavin-bind 87.7 4 8.7E-05 47.0 11.3 68 122-189 82-152 (531)
463 TIGR03219 salicylate_mono sali 87.6 2.9 6.2E-05 46.7 9.9 56 124-188 105-160 (414)
464 PF07992 Pyr_redox_2: Pyridine 87.2 0.34 7.4E-06 47.8 2.0 56 131-187 65-122 (201)
465 KOG2495|consensus 87.2 5.1 0.00011 43.5 10.6 63 124-189 107-172 (491)
466 PLN02785 Protein HOTHEAD 87.2 1.4 3E-05 51.4 7.2 56 131-187 227-290 (587)
467 COG2871 NqrF Na+-transporting 87.1 1 2.2E-05 45.7 5.0 52 578-636 50-122 (410)
468 KOG4254|consensus 87.0 0.92 2E-05 49.2 5.0 57 125-187 265-321 (561)
469 PRK12387 formate hydrogenlyase 86.8 0.63 1.4E-05 45.3 3.5 18 694-711 72-89 (180)
470 TIGR03385 CoA_CoA_reduc CoA-di 86.7 0.44 9.5E-06 53.5 2.7 50 135-188 55-104 (427)
471 PRK15449 ferredoxin-like prote 86.5 0.13 2.9E-06 43.6 -1.2 38 703-767 39-76 (95)
472 TIGR03315 Se_ygfK putative sel 86.5 0.68 1.5E-05 56.7 4.3 35 357-400 803-837 (1012)
473 PRK13030 2-oxoacid ferredoxin 86.3 0.22 4.8E-06 61.4 0.1 52 693-770 627-681 (1159)
474 PF04820 Trp_halogenase: Trypt 86.0 2.3 4.9E-05 48.1 8.0 59 124-188 154-212 (454)
475 PF13534 Fer4_17: 4Fe-4S diclu 85.7 0.13 2.9E-06 40.0 -1.5 19 753-771 1-19 (61)
476 COG1941 FrhG Coenzyme F420-red 85.7 0.34 7.4E-06 47.9 1.0 54 694-778 189-242 (247)
477 PRK13029 2-oxoacid ferredoxin 85.5 0.2 4.3E-06 61.5 -0.8 51 693-769 655-708 (1186)
478 TIGR01292 TRX_reduct thioredox 85.5 2.8 6E-05 44.2 8.0 53 130-184 182-235 (300)
479 PTZ00363 rab-GDP dissociation 85.1 2.8 6.1E-05 47.0 8.0 57 123-184 231-287 (443)
480 PLN02487 zeta-carotene desatur 85.0 3.7 8.1E-05 47.6 9.2 68 117-186 288-359 (569)
481 TIGR02163 napH_ ferredoxin-typ 84.9 0.22 4.8E-06 51.4 -0.7 18 751-768 200-217 (255)
482 PRK09193 indolepyruvate ferred 84.8 0.22 4.8E-06 61.3 -0.9 52 693-770 641-695 (1165)
483 PF12838 Fer4_7: 4Fe-4S diclus 84.8 0.24 5.2E-06 37.1 -0.4 17 694-710 35-51 (52)
484 COG3383 Uncharacterized anaero 84.6 0.3 6.4E-06 55.9 0.0 19 694-712 191-209 (978)
485 TIGR02732 zeta_caro_desat caro 84.4 2.6 5.7E-05 47.9 7.6 62 122-186 217-283 (474)
486 COG2440 FixX Ferredoxin-like p 84.3 0.18 3.9E-06 42.3 -1.4 48 692-766 30-79 (99)
487 PF13484 Fer4_16: 4Fe-4S doubl 83.6 0.3 6.5E-06 38.8 -0.4 16 753-768 1-16 (67)
488 KOG0430|consensus 83.6 2.2 4.8E-05 51.5 6.5 67 574-645 11-89 (1257)
489 PRK07233 hypothetical protein; 83.5 3 6.5E-05 46.7 7.6 56 123-185 197-252 (434)
490 COG2072 TrkA Predicted flavopr 83.4 6.5 0.00014 44.2 10.1 25 1-25 21-46 (443)
491 PRK08255 salicylyl-CoA 5-hydro 83.3 3.7 7.9E-05 49.8 8.6 46 124-188 97-142 (765)
492 PRK08222 hydrogenase 4 subunit 82.7 0.54 1.2E-05 45.7 1.0 18 694-711 72-89 (181)
493 COG1150 HdrC Heterodisulfide r 82.5 0.75 1.6E-05 44.2 1.8 32 751-782 38-73 (195)
494 TIGR01316 gltA glutamate synth 82.3 3.7 7.9E-05 46.4 7.6 55 132-186 317-386 (449)
495 COG4656 RnfC Predicted NADH:ub 82.2 0.79 1.7E-05 50.7 2.0 27 753-779 366-392 (529)
496 cd06219 DHOD_e_trans_like1 FAD 82.0 0.89 1.9E-05 46.8 2.4 52 577-629 185-238 (248)
497 PF13183 Fer4_8: 4Fe-4S diclus 82.0 0.083 1.8E-06 40.4 -4.0 20 752-771 3-22 (57)
498 PRK05035 electron transport co 82.0 0.7 1.5E-05 54.4 1.7 28 751-778 369-396 (695)
499 PRK12831 putative oxidoreducta 81.7 3.5 7.7E-05 46.7 7.3 55 133-187 327-396 (464)
500 TIGR00292 thiazole biosynthesi 81.4 1.8 3.9E-05 44.7 4.3 44 357-402 210-253 (254)
No 1
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=100.00 E-value=1.3e-99 Score=871.65 Aligned_cols=565 Identities=53% Similarity=0.894 Sum_probs=494.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|+++|++|+||||....+|+|.+++||++++....++|+++.|++|+++.+.+++|+++++.+++++++.++||
T Consensus 63 l~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~~l~~~s~~~i~~L 142 (635)
T PLN00128 63 LRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIEL 142 (635)
T ss_pred HHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHhHHHHHHHH
Confidence 58999999999999999999988899999999999877643489999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCC-CCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFG-EKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~-~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
++||++|+++.+|.+..+.+++|+..++ ....+|+.+..+.+|..++..|.+.+.+.||+|++++.+++|+.+++|+|+
T Consensus 143 ~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~ 222 (635)
T PLN00128 143 ENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQ 222 (635)
T ss_pred HhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEE
Confidence 9999999998888887778888843221 113568888889999999999999999899999999999999987448999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~ 239 (786)
|+++++..+|+.+.|.||+|||||||++++|..++++..+||||++||+++||.+.||||+||||+.+.+.+++++++++
T Consensus 223 Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mefvqfhPt~~~~~~~l~~ea~r 302 (635)
T PLN00128 223 GVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSR 302 (635)
T ss_pred EEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcceEEecccccCCCeEEeeecc
Confidence 99998877898889999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcC
Q psy9575 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFAN 319 (786)
Q Consensus 240 ~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g 319 (786)
++|++++|.+|+|||++|+|..+++++||+++++|+.++.+++++.|.++.+|+|+++++++.+++++|.+++.+..+.|
T Consensus 303 g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~l~~e~l~~~~~~~~~~~~~~~G 382 (635)
T PLN00128 303 GEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAG 382 (635)
T ss_pred CCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888999999999999999999887534345699999999999999999999998887679
Q ss_pred CCCCCCCeeeeecccccccCcccCCCCcccccCC-CCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 320 VNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNN-DNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 320 ~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~-~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
+|+.++|+||.|++||+||||.||.++||++.++ +.+|+|||||||||++|+|+||+||+|||+|++|+|||++||++|
T Consensus 383 ~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~a 462 (635)
T PLN00128 383 VDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRV 462 (635)
T ss_pred CCCCCCceEeeccceEecCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998875 345899999999999988999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccc
Q psy9575 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478 (786)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~ 478 (786)
+++++......+...+..+...+.+..+...+++.+|.+++++||++||+++||+|++++|++++.+|++|++++..+.+
T Consensus 463 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~ 542 (635)
T PLN00128 463 AEIAKPGEKQKPLPKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKV 542 (635)
T ss_pred HHhhcccccccccchhhHHHHHHHHHHhhcccCCCChHHHHHHHHHHHhCceeEEECHHHHHHHHHHHHHHHHHHHhccc
Confidence 99864321111122222222223333333333457889999999999999999999999999999999999988888777
Q ss_pred cCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec--CceeeeccCcCCCCc
Q psy9575 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN--GNRIEFKPVNLKPLT 556 (786)
Q Consensus 479 ~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 556 (786)
.+....+|++|.+++|++||+++|+++++|||+|+||||+|||.|||++||++|++|+++.++ ++++.++|++..|.+
T Consensus 543 ~~~~~~~~~~~~~~~e~~n~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (635)
T PLN00128 543 TDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEEGKVRLDYRPVHMNTLD 622 (635)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCCccccccEEEEEecCCcceEEeccccccccc
Confidence 777777899999999999999999999999999999999999999999999999999987654 357888888754443
Q ss_pred --ccccCCCCc
Q psy9575 557 --VKTVHPKKH 565 (786)
Q Consensus 557 --v~~~~p~~r 565 (786)
+..++|..|
T Consensus 623 ~~~~~~~p~~~ 633 (635)
T PLN00128 623 DEVETFPPKAR 633 (635)
T ss_pred ccccccCCCCC
Confidence 445666543
No 2
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1e-99 Score=868.40 Aligned_cols=566 Identities=57% Similarity=0.977 Sum_probs=496.9
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC-CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++|++.|++|+||||....+|+|.+++|||+++.... .+|+++.|++|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998999999999998876432 27999999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCC-CCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCE
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFG-EKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDI 158 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~-~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v 158 (786)
|++||++|++..+|.+..+.+|+|+..+. ..+.+|++|..+.+|..|+..|.+.+++.||+|++++.+++|+.+++|+|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE
Confidence 99999999999999988888888843221 12457999999999999999999999999999999999999998644899
Q ss_pred EEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCcccccc
Q psy9575 159 LGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGV 238 (786)
Q Consensus 159 ~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~ 238 (786)
+||++++..+|+++.|+||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+.+.++++++++
T Consensus 161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~~~l~~e~~ 240 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240 (570)
T ss_pred EEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCCceEeeccc
Confidence 99999988899999999999999999999999999999999999999999999999999999999998888888899999
Q ss_pred ccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhc
Q psy9575 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFA 318 (786)
Q Consensus 239 ~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
+++|++++|.+|+|||++|+|..+++++|++++++|+.++.++++..+.++.+|+|+++++++.++.++|.+.+.++.+.
T Consensus 241 rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~l~~~~~~~~~~~~~~~ 320 (570)
T PRK05675 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTFA 320 (570)
T ss_pred cCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHHHHHhccHHHHHHHHhc
Confidence 99999999999999999999988899999999999999999987753334569999999999999999999888888766
Q ss_pred CCCCCCCCeeeeecccccccCcccCCCCcccccC-CCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHH
Q psy9575 319 NVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPN-NDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNH 397 (786)
Q Consensus 319 g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~-~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~ 397 (786)
++||.++|++|.|.+||+||||.||.+++|++.| ....|+|||||||||++|+|+||+||+|||||++|+|||++||++
T Consensus 321 ~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~ 400 (570)
T PRK05675 321 HVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLH 400 (570)
T ss_pred CCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999876 223489999999999997799999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhcccc
Q psy9575 398 ILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477 (786)
Q Consensus 398 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~ 477 (786)
|+++++............++....++..+...+++.++.+++++||++||+|+||+|++++|++||.+|++|++++..+.
T Consensus 401 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 480 (570)
T PRK05675 401 LEKALKEGIEYRDASESDIDAALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480 (570)
T ss_pred HHHHHhcccccccCChHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhCCceecHHHHHHHHHHHHHHHHHHHhhc
Confidence 99987543211222222333344445555544456778899999999999999999999999999999999998888888
Q ss_pred ccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEecCceeeeccCcCCCCcc
Q psy9575 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKPVNLKPLTV 557 (786)
Q Consensus 478 ~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 557 (786)
+.|....+|.++.+++|++||+++|+++++|||+|+||||+|||+|||++||++|++|+++...+..+.++++...|..+
T Consensus 481 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (570)
T PRK05675 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTLYFPGEKRVGKRAVNFAPKTV 560 (570)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChhhhcceEEEeccCCccceeccccccccc
Confidence 88777788999999999999999999999999999999999999999999999999998866433355667766555556
Q ss_pred cccCCCCcC
Q psy9575 558 KTVHPKKHH 566 (786)
Q Consensus 558 ~~~~p~~r~ 566 (786)
..|+|..|.
T Consensus 561 ~~~~~~~~~ 569 (570)
T PRK05675 561 PAFEPKVRT 569 (570)
T ss_pred cccCCCCCC
Confidence 677776544
No 3
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-100 Score=802.16 Aligned_cols=487 Identities=37% Similarity=0.578 Sum_probs=434.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|++|+.|++. .+|+||.|+....++|.||||||.+++++ +||++.|+.||+.+|.|+||++.|+.++.+++++++||
T Consensus 20 L~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~--~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~~~~~ai~~L 96 (518)
T COG0029 20 LTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSE--DDSPELHVADTLAAGAGLCDEEAVEFIVSEAPEAIEWL 96 (518)
T ss_pred HHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCC--CCCHHHHHHHHHHhcCCCCcHHHHHHHHHhHHHHHHHH
Confidence 6899999998 89999999998889999999999999998 89999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCC-CE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEG-DI 158 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g-~v 158 (786)
.++||+|+++.+|.+.+..+|+| +.+|+.|+.+.||+.++.+|.+++++ .+|++++++.+.+|++++ + .+
T Consensus 97 i~~Gv~FDr~~~g~~~lt~EggH-------S~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~ 168 (518)
T COG0029 97 IDLGVPFDRDEDGRLHLTREGGH-------SRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGV 168 (518)
T ss_pred HHcCCCCcCCCCCceeeeeeccc-------CCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceE
Confidence 99999999999999999999999 99999999999999999999999988 599999999999999997 7 55
Q ss_pred EEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC---CCCccc
Q psy9575 159 LGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG---AGVLIT 235 (786)
Q Consensus 159 ~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~---~~~~~~ 235 (786)
+|+.+.+. .++...|.|++|||||||.+++|..++||..++|||++||+++||.+.||||+|||||.++. ..+|++
T Consensus 169 ~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l~~~~~~~~LiS 247 (518)
T COG0029 169 AGVLVLNR-NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQRRAFLIS 247 (518)
T ss_pred eEEEEecC-CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccceecCCCCccceee
Confidence 69999873 23678999999999999999999999999999999999999999999999999999999765 347999
Q ss_pred cccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHH
Q psy9575 236 EGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGN 315 (786)
Q Consensus 236 ~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~ 315 (786)
|++||+|++|+|.+|+|||+.|+|.. ||+|||+|+|+|+.|++++.. .||||+++++.+.++++||.+.+.|+
T Consensus 248 EAVRGEGA~L~~~~GeRFm~~~~p~~-ELAPRDVVARAI~~e~~~~g~------~V~LD~s~~~~~~~~~rFP~I~~~c~ 320 (518)
T COG0029 248 EAVRGEGAILVNEDGERFMPDYHPRG-ELAPRDVVARAIDAEMKRGGA------DVFLDISHIPGDFFERRFPTIYAACL 320 (518)
T ss_pred hhhhcCccEEECCCCCccccCCCCcc-ccchHHHHHHHHHHHHHhcCC------eEEEeccCCCchhhhhhCcHHHHHHH
Confidence 99999999999999999999999987 999999999999999999643 29999999999999999999999999
Q ss_pred hhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHH
Q psy9575 316 KFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAG 395 (786)
Q Consensus 316 ~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag 395 (786)
+ .|+||.++||||.|++||+||||.||.+|| |+||||||+||++|+|+||||||++|||.||+|||+.|+
T Consensus 321 ~-~GiD~~r~~IPV~PaaHY~mGGI~vD~~Gr---------Tsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA 390 (518)
T COG0029 321 K-AGIDPTREPIPVVPAAHYTMGGIAVDANGR---------TSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAA 390 (518)
T ss_pred H-cCCCcccCccCccchhheecccEEECCCCc---------ccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHH
Confidence 9 799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccC-CCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhc
Q psy9575 396 NHILSLELKKIH-NKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRK 474 (786)
Q Consensus 396 ~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~ 474 (786)
+.++........ ....+... . ......+..-+++||++||+|+||+|+.++|++++.+|+.++.+-.
T Consensus 391 ~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~~~~l~~~~~~~~ 458 (518)
T COG0029 391 EDIAGRLAPAPREAPTLPVRD-------D-----YEENVLLAHDRHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQEND 458 (518)
T ss_pred HHhhcccccCccCCCCCCccc-------c-----cccccccccCHHHHHHHHHhhcceEechHHHHHHHHHHHhhhhhhh
Confidence 999986533321 11111110 0 0000111223578999999999999999999999999999987754
Q ss_pred cccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec
Q psy9575 475 YISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN 541 (786)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~ 541 (786)
.. .+ .+. +-+|++++|++|+.+||+|+||||+|||.|||.+.+ .|...++++..
T Consensus 459 ~~--~~------~~~----~~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~-~~~~~~~~~~~ 512 (518)
T COG0029 459 EY--AN------FRV----SNRNLALVALLIARAALLRTESRGAHFRLDYPDTLP-EAQRRILVTLN 512 (518)
T ss_pred hc--cc------ccc----cccCHHHHHHHHHHHHHhccccccceecccCCCcCc-cccCceEEecc
Confidence 33 11 111 129999999999999999999999999999999876 68888877654
No 4
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=8.1e-99 Score=862.90 Aligned_cols=567 Identities=54% Similarity=0.921 Sum_probs=498.6
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.|++|+||||....+|+|.+++||++++.+...+|+++.|++|+++.+.+++|+++++.+++++++.++||
T Consensus 20 l~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~~~~~s~~~i~~L 99 (588)
T PRK08958 20 MRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILEL 99 (588)
T ss_pred HHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999888899999999998775532379999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
++||++|++.++|.+..+.+++|+..++..+.+|++|..+.+|..|+..|.+++.+.||++++++.+++|+++++|+|+|
T Consensus 100 ~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~G 179 (588)
T PRK08958 100 EHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVG 179 (588)
T ss_pred HHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEE
Confidence 99999999988888877778888544444467899999999999999999999988999999999999999864489999
Q ss_pred EEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCcccccccc
Q psy9575 161 VVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240 (786)
Q Consensus 161 ~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~~ 240 (786)
|++++..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+.+.++++++++++
T Consensus 180 v~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~~~~~l~~e~~rg 259 (588)
T PRK08958 180 CTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRG 259 (588)
T ss_pred EEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceEeecCcccCCceEEeecccc
Confidence 99988778988899999999999999999999999999999999999999999999999999999887778888999999
Q ss_pred CCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCC-CCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcC
Q psy9575 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINSETIINRLPSILEIGNKFAN 319 (786)
Q Consensus 241 ~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~-~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g 319 (786)
+|+++||.+|+||+++|+|..+++++|++++++++.++.++++.. ..+..+|+|+++++++.+++++|.+.+.++.+.+
T Consensus 260 ~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~~v~ld~~~l~~~~l~~~~~~~~~~~~~~~~ 339 (588)
T PRK08958 260 EGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAH 339 (588)
T ss_pred CceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCCCeEEEEcccCCHHHHHHHcccHHHHHHHhcC
Confidence 999999999999999999987899999999999999998887741 1234599999999999999999999888887668
Q ss_pred CCCCCCCeeeeecccccccCcccCCCCcccccCC-CCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 320 VNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNN-DNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 320 ~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~-~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
+|+.++|++|.|.+||+||||.||.++||++.|. ..+|+|||||||||++|+|+||+||+||+||++|+|||++||++|
T Consensus 340 ~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~a 419 (588)
T PRK08958 340 VDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHL 419 (588)
T ss_pred CCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998873 234899999999999977999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccc
Q psy9575 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478 (786)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~ 478 (786)
+++++.......++.+.++...+++..+....++.++.+++++||++||+++||+|++++|++||.+|++|++++..+.+
T Consensus 420 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~ 499 (588)
T PRK08958 420 QESLAEQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKGLEELKVIRERLKNARL 499 (588)
T ss_pred HHHhhccCCcccCCHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHHHHHHHhccc
Confidence 99875432122233333444445554444434456788999999999999999999999999999999999998888887
Q ss_pred cCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEecCceeeeccCcCCCCccc
Q psy9575 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKPVNLKPLTVK 558 (786)
Q Consensus 479 ~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 558 (786)
.|....||.++++++|++||+++|+++++|||+|+||||+|||+|||++||++|++|+++..+..++.++++...|+.+.
T Consensus 500 ~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (588)
T PRK08958 500 DDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPETESMTRRSVNMEPKLRP 579 (588)
T ss_pred CccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCCCCCCCchhhceEEEEecCCCcccccccccccceee
Confidence 77777789999999999999999999999999999999999999999999999999987655555677777776666677
Q ss_pred ccCCCCcCC
Q psy9575 559 TVHPKKHHD 567 (786)
Q Consensus 559 ~~~p~~r~~ 567 (786)
.++|..|.|
T Consensus 580 ~~~p~~r~y 588 (588)
T PRK08958 580 AFPPKIRTY 588 (588)
T ss_pred eeCCCCCCC
Confidence 788876553
No 5
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=100.00 E-value=2e-98 Score=863.05 Aligned_cols=566 Identities=55% Similarity=0.911 Sum_probs=495.2
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.|++|+||||....+|+|.+++||++++....++|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 42 l~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~~l~~~s~~~i~~L 121 (617)
T PTZ00139 42 LRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQYMCREAPQAVLEL 121 (617)
T ss_pred HHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999998899999999999876543489999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCC-CCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFG-EKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~-~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
++||++|++..+|.+..+.+++|+..+. ..+.+|+.+..+.+|..++..|.+.+++.||+|++++.+++|+.+++|+|+
T Consensus 122 ~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~ 201 (617)
T PTZ00139 122 ESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECR 201 (617)
T ss_pred HhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEE
Confidence 9999999998888877777888743221 235689999989999999999999999999999999999999984348999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~ 239 (786)
||++++..+|+.+.|+||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.+.+.+++++++
T Consensus 202 Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef~q~~pt~~~~~~~l~~e~~r 281 (617)
T PTZ00139 202 GVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFVQFHPTGIYGAGCLITEGCR 281 (617)
T ss_pred EEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCceEEeccccccCCCcEEEeecc
Confidence 99998877898889999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcC
Q psy9575 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFAN 319 (786)
Q Consensus 240 ~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g 319 (786)
++|++++|.+|+|||++|+|..+++++|+++++++..++.+|++..|.+.++|+|+++++++.++++++.+++.+..+.|
T Consensus 282 g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~~~v~lD~~~~~~~~l~~~~~~~~~~~~~~~G 361 (617)
T PTZ00139 282 GEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGISETAKIFAG 361 (617)
T ss_pred CCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888999999999999999998887534446799999999999999999999998886569
Q ss_pred CCCCCCCeeeeecccccccCcccCCCCcccccCC-CCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 320 VNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNN-DNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 320 ~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~-~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
+|+.++++||.|++||+||||.||.++||+|.++ +..|+|||||||||++|+|+||+||+|||+|++|+|||++||++|
T Consensus 362 ~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~a 441 (617)
T PTZ00139 362 VDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTV 441 (617)
T ss_pred CCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988621 123899999999999988999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccc
Q psy9575 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478 (786)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~ 478 (786)
+++++..........+..+...+++..+...+++.+|.+++++||++||+|+||+|++++|+++|.+|++|++++..+.+
T Consensus 442 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~ 521 (617)
T PTZ00139 442 MEILKPGRPQPDLPKDAGEASIARLDKIRHNKGDISTAQIRKRMQRTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKI 521 (617)
T ss_pred HHhhcccCCCcccchhhhHHHHHHHHHHhcccCCcChHHHHHHHHHHHhhhceeEECHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99875432112222222233333444444444567899999999999999999999999999999999999988888877
Q ss_pred cCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec-----CceeeeccCcCC
Q psy9575 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN-----GNRIEFKPVNLK 553 (786)
Q Consensus 479 ~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~ 553 (786)
.+....||++|++++|++||+++|+++++|||+|+||||+|||.|||++||++|+++++.... .+++.++|++-.
T Consensus 522 ~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (617)
T PTZ00139 522 KDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARDDFPERDDKNWMKHTLSYIRDVKKGKVRLTYRPVITT 601 (617)
T ss_pred cccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhccCcCCcCCchhhceEEEEEeccCCCCCceEEEecCccc
Confidence 887778999999999999999999999999999999999999999999999999999986552 357888888743
Q ss_pred CCc--ccccCCCCcC
Q psy9575 554 PLT--VKTVHPKKHH 566 (786)
Q Consensus 554 ~~~--v~~~~p~~r~ 566 (786)
++. +.+++|..|.
T Consensus 602 ~~~~~~~~~~~~~~~ 616 (617)
T PTZ00139 602 PLDNEMETVPPAKRV 616 (617)
T ss_pred cccccccccCCCCCC
Confidence 332 5567776544
No 6
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=100.00 E-value=4.7e-98 Score=855.00 Aligned_cols=559 Identities=60% Similarity=0.979 Sum_probs=491.6
Q ss_pred cHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Q psy9575 7 LAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYELEHFGMP 86 (786)
Q Consensus 7 aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~ 86 (786)
|++.|++|+||||....+|+|.+++|||+++.+..++|+++.|++|+++.+.+++|+++++.+++++++.++||++||++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 56889999999999999999999999999988754589999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccCCCCccCCCCCC-CcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEE
Q psy9575 87 FDRNKNGTIYQRPFGGHSSNFGEK-PIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALE 165 (786)
Q Consensus 87 ~~~~~~g~~~~~~~gg~~~~~~~~-~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~ 165 (786)
|++..+|.+..+.+++|+..++.. +.+|+++..+.+|..|+..|.+++++.||+|++++.+++|++++ |+|+||++++
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~ 159 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYC 159 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEE
Confidence 999888888777788884333221 45899999899999999999999999999999999999999985 9999999988
Q ss_pred cCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccccCCcEE
Q psy9575 166 METGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGIL 245 (786)
Q Consensus 166 ~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~~~g~~~ 245 (786)
..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+.+.+++++++++++|+++
T Consensus 160 ~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~~~l~~e~~r~~g~~l 239 (565)
T TIGR01816 160 LETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLITEGCRGEGGIL 239 (565)
T ss_pred cCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCCceEEeccccCCceEE
Confidence 77899889999999999999999999999999999999999999999999999999999988777888889999999999
Q ss_pred EcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcCCCCCCC
Q psy9575 246 INSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKE 325 (786)
Q Consensus 246 vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~ 325 (786)
||.+|+||+++|+|..+++++|++++++|+.++.++++..+.+..+|+|+++++++.+.+++|.+++++..+.|+|+.++
T Consensus 240 vn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~ 319 (565)
T TIGR01816 240 INANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPGISETARTFAGVDPVKD 319 (565)
T ss_pred ECCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhhHHHHHHHHcCCCCCCC
Confidence 99999999999999888999999999999999998887534445799999999999999999999999887569999999
Q ss_pred CeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 326 PIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 326 ~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
|++|.|.+||+||||.||.++||++......|+|||||||||++|+|+||+||+|||+|++|+|||++||++|+++++..
T Consensus 320 ~i~v~p~~h~t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~~~ 399 (565)
T TIGR01816 320 PIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPG 399 (565)
T ss_pred cEEeeeeeeeecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999976111338999999999999779999999999999999999999999999987543
Q ss_pred cCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccccCCCccc
Q psy9575 406 IHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIF 485 (786)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~ 485 (786)
....+...+.++....++..+...+++.+|.+++++||++||+++||+|++++|++++.+|++|++++..+.+.|....+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~ 479 (565)
T TIGR01816 400 SDVKPMPPNAGEESVMRLDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSKVW 479 (565)
T ss_pred ccccccccchhHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 21222222233333344555555445567889999999999999999999999999999999999888888777776778
Q ss_pred chHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec----CceeeeccCcCCCCcccccC
Q psy9575 486 NTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN----GNRIEFKPVNLKPLTVKTVH 561 (786)
Q Consensus 486 ~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~ 561 (786)
|++|++++|++||+++|+++++|||+|+||||+|||.|||++||++|++|++++++ ++.+.++|+++.|+.+.++.
T Consensus 480 ~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (565)
T TIGR01816 480 NTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLSYVDINTGKVLLSYKPVIFKPLTVADFE 559 (565)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCccccccEEEEEecCCCCcceEEecccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999987653 35788888886555555666
Q ss_pred CCCcC
Q psy9575 562 PKKHH 566 (786)
Q Consensus 562 p~~r~ 566 (786)
|..|.
T Consensus 560 ~~~~~ 564 (565)
T TIGR01816 560 PKKRV 564 (565)
T ss_pred CCCCC
Confidence 65443
No 7
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.6e-97 Score=855.00 Aligned_cols=566 Identities=54% Similarity=0.917 Sum_probs=494.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.|++|+||||....+|+|.+++||+++.....++|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 25 l~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~~L 104 (598)
T PRK09078 25 LRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCREAPAAVYEL 104 (598)
T ss_pred HHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999888899999999999877644489999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCC-CCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGE-KPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~-~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
++||++|++..+|++..+.+++|+..++. .+.+|+++..+.+|..++..|.+.+++.||+|++++.+++|+++++|+|+
T Consensus 105 ~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~ 184 (598)
T PRK09078 105 EHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCR 184 (598)
T ss_pred HHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEE
Confidence 99999999988898877788888543332 25689999989999999999999999999999999999999987547999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~ 239 (786)
|+++++..+|+.+.|.||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.+.+++++++++
T Consensus 185 Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~~q~~pt~~~~~~~l~~e~~r 264 (598)
T PRK09078 185 GVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFVQFHPTGIYGAGCLITEGAR 264 (598)
T ss_pred EEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCchheecccccCCCceEEeeccc
Confidence 99998877888889999999999999999999889999999999999999999999999999999988777788889999
Q ss_pred cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcC
Q psy9575 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFAN 319 (786)
Q Consensus 240 ~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g 319 (786)
++|+++||.+|+||+++|+|..+++++||+++++++.++.++++..+.+..+|+|+++++++.+++++|.+++.+..+.|
T Consensus 265 g~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g 344 (598)
T PRK09078 265 GEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKKDHIFLHLDHLDPEVLHERLPGISESAKIFAG 344 (598)
T ss_pred CCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999888999999999999999999877533345699999999999999999999998887569
Q ss_pred CCCCCCCeeeeecccccccCcccCCCCcccccCC-CCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 320 VNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNN-DNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 320 ~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~-~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
+|+.++|+||.|.+||+||||.||.++||++.++ +..|+|||||||||++|+|+||+||||||+|++|+|||++||++|
T Consensus 345 ~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~a 424 (598)
T PRK09078 345 VDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRA 424 (598)
T ss_pred CCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 234899999999999987999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccc
Q psy9575 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478 (786)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~ 478 (786)
+++++......+......+....++..+...+.+.+|.+++++||++||+++||+|++++|+++|.+|++|++++..+.+
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~ 504 (598)
T PRK09078 425 AEVIKPGAPHPPLPKDACDKALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKV 504 (598)
T ss_pred HHhhhccCCCcccchhhHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHhCCeeEEECHHHHHHHHHHHHHHHHHHHhccc
Confidence 99875432112222222233333444444444456788999999999999999999999999999999999988888777
Q ss_pred cCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec---CceeeeccCcCCCC
Q psy9575 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN---GNRIEFKPVNLKPL 555 (786)
Q Consensus 479 ~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 555 (786)
.|....+|++|.+++|++||+++|+++++|||+|+||||+|||.|||++||++|++|++.+++ ++++.++|++.-++
T Consensus 505 ~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (598)
T PRK09078 505 TDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAREDFPDRDDENWMKHTLAWVDDKGKVKLDYRPVHLYTL 584 (598)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhccCCCCccCccccccEEEEEecCCCCceEEeccCccccc
Confidence 777777899999999999999999999999999999999999999999999999999987653 35788888874333
Q ss_pred c--ccccCCCCcC
Q psy9575 556 T--VKTVHPKKHH 566 (786)
Q Consensus 556 ~--v~~~~p~~r~ 566 (786)
. +..++|..|.
T Consensus 585 ~~~~~~~~p~~~~ 597 (598)
T PRK09078 585 TDDVQYIPPKKRV 597 (598)
T ss_pred cccccccCCcCCC
Confidence 2 4445555443
No 8
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=9.2e-97 Score=847.57 Aligned_cols=563 Identities=73% Similarity=1.199 Sum_probs=494.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.|++|+||||....+|+|.+++||+++..+..++|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 25 l~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~~~~~~a~~~i~~L 104 (591)
T PRK07057 25 MRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIEFMCREAPNVVYEL 104 (591)
T ss_pred HHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999888899999999998877644589999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
+++|++|++..+|.+..+.+++|+..+...+.+|+.+..+.+|..++..|.+.+.+.||++++++.+++|+.+++|+|+|
T Consensus 105 ~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~G 184 (591)
T PRK07057 105 EHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLG 184 (591)
T ss_pred HhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEE
Confidence 99999999988888877788998654444456899998899999999999999988999999999999999874489999
Q ss_pred EEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCcccccccc
Q psy9575 161 VVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240 (786)
Q Consensus 161 ~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~~ 240 (786)
+++++..+|+...|.||+|||||||++++|.+++++..+||||+.||+++||.+.||||+||||+.+...++++++++++
T Consensus 185 v~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~~~l~~e~~rg 264 (591)
T PRK07057 185 VTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHPTGVAGAGVLITEGVRG 264 (591)
T ss_pred EEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcccccccCCccCCCceEEeecccC
Confidence 99988778888889999999999999999999999999999999999999999999999999999887777888999999
Q ss_pred CCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcCC
Q psy9575 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANV 320 (786)
Q Consensus 241 ~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (786)
+|++++|.+|+|||++|+|..+++++||+++++++.++.+|++..|.+.++|+|.++++++.+..++|++.+++.++.++
T Consensus 265 ~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~~~v~lD~~~~~~~~~~~~~~~i~e~~~~~~~~ 344 (591)
T PRK07057 265 EGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNGDHVLLDLTHLGAETIMKRLPSIREIALKFANV 344 (591)
T ss_pred CceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCCCCCEEEEeCCCCCHHHHHHHccHHHHHHHHhcCC
Confidence 99999999999999999998779999999999999999998875444457999999999888889999999999886579
Q ss_pred CCCCCCeeeeecccccccCcccCCCCccccc---CCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHH
Q psy9575 321 NALKEPIPVIPTIHYQMGGIPTNIYGQVIIP---NNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNH 397 (786)
Q Consensus 321 d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~---~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~ 397 (786)
|+.++|+||.|++||+||||.||.++||+|. ++ ++|||||||||++|+|+||+|||||+||++|+|||++||++
T Consensus 345 d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~~~g---~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~ 421 (591)
T PRK07057 345 DCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHK---EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNH 421 (591)
T ss_pred CCCCCCeeeehhHheeCCCeeECCCCcEeccccCCC---CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875 45 89999999999997799999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhcccc
Q psy9575 398 ILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477 (786)
Q Consensus 398 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~ 477 (786)
|+++++.......++....+....++..+.....+.+|.+++++||++||+|+||+|++++|++||++|++|++++..+.
T Consensus 422 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 501 (591)
T PRK07057 422 IVDHVKKQHEHKPLPADAADFSLARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEGVEQILALAERVENIH 501 (591)
T ss_pred HHHHhhccCCCcchhhhhhHHHHHHHhhhhccccccCHHHHHHHHHHHHHhcCCeEECHHHHHHHHHHHHHHHHHHHHhc
Confidence 99987543211222222222333334333333345678899999999999999999999999999999999998888888
Q ss_pred ccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEecCceeeeccCcCCCCcc
Q psy9575 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKPVNLKPLTV 557 (786)
Q Consensus 478 ~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 557 (786)
+.|.+..||.++.+++|++||+++|+++++|||+|+||||+|||+|||+++|++|++++++..+...+.++|++..++.+
T Consensus 502 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (591)
T PRK07057 502 LKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEHRDDENWLKHTLWYSEGNRLDYKPVQMKPLTV 581 (591)
T ss_pred cCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCCCCCCCchhhcceEEEecCCCccccccccccccee
Confidence 88888888999999999999999999999999999999999999999999999999998876655578888887545555
Q ss_pred cccCCCCcC
Q psy9575 558 KTVHPKKHH 566 (786)
Q Consensus 558 ~~~~p~~r~ 566 (786)
..++|..|.
T Consensus 582 ~~~~~~~r~ 590 (591)
T PRK07057 582 ESVPPKART 590 (591)
T ss_pred eeeCCCCCC
Confidence 566775543
No 9
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=8.7e-97 Score=852.81 Aligned_cols=549 Identities=37% Similarity=0.580 Sum_probs=485.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC---CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM---SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVV 77 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~---~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i 77 (786)
|+||++|++.|++|+||||....+|+|.+++||+++..+.. .+|+++.|+.|+++.+.+++|+++++.+++++++.+
T Consensus 18 l~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D~~~vr~~v~~sp~~i 97 (657)
T PRK08626 18 LRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCDQEVARMFVHTAPKAV 97 (657)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999998899999999998775421 278999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccCCCc---------------------ccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc
Q psy9575 78 YELEHFGMPFDRNKNGT---------------------IYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH 136 (786)
Q Consensus 78 ~~l~~~Gv~~~~~~~g~---------------------~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~ 136 (786)
+||++||++|++..+|. +..+.+||+ +.+|+++..+.+|+.++..|.+.+++
T Consensus 98 ~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~-------~~~R~~~~~d~tG~~l~~~L~~~~~~ 170 (657)
T PRK08626 98 RELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGT-------KKWRTCYTADGTGHTMLYAVDNEAIK 170 (657)
T ss_pred HHHHHcCCCCeecCCCccccccccccccccccccccccccccccccc-------ccceeEecCCCcHHHHHHHHHHHHHh
Confidence 99999999998765542 222345565 88999999899999999999999999
Q ss_pred CCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCC-Ccc
Q psy9575 137 AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGL-PLE 215 (786)
Q Consensus 137 ~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa-~l~ 215 (786)
.||+|++++.+++|+.++ |+|+|+++.+..+|+.+.|.||+|||||||++++|..++++..+||||++||+++|| .+.
T Consensus 171 ~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~~mA~~aGaa~l~ 249 (657)
T PRK08626 171 LGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGAAIALETGVAPLG 249 (657)
T ss_pred CCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHHHHHHHcCCcccc
Confidence 999999999999999986 999999998877898888999999999999999999999999999999999999996 799
Q ss_pred CCCccccccccccCCCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCC-CCCCCeEEEe
Q psy9575 216 DMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVMLD 294 (786)
Q Consensus 216 ~~e~~q~~p~~~~~~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~-~~~~~~v~ld 294 (786)
||||+||||+.+.+.+++++++++++|++++|.+|+|||++|+|...|+++||+++++|+.++.+|+|+ .+.+.++|+|
T Consensus 250 ~mE~vqfhPt~~~~~g~l~~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vsrai~~~~~~g~g~~~~~~~~v~lD 329 (657)
T PRK08626 250 NMEAVQFHPTAIVPSGILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVSRRMTEHIRKGKGVKSPYGPHLWLD 329 (657)
T ss_pred CccceEEeccEECCCCeEEEeeccCCCEEEECCCCCCCCcccCcccccccchhHHHHHHHHHHHhcCCCCCCCCCEEEEE
Confidence 999999999999888889999999999999999999999999998889999999999999999998875 2344579999
Q ss_pred CCCCChhHHHhHchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCc-ccCceeeecccCCccC
Q psy9575 295 LRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNK-IVNGLYAIGECACVSV 373 (786)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t-~IpGLyAaGe~a~gg~ 373 (786)
+++++.+.+.++++.+.+++..+.|+||.++++||.|++||+||||+||.+++ | +|||||||||++|+|+
T Consensus 330 ~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~---------t~~I~GLyAaGE~a~~g~ 400 (657)
T PRK08626 330 IRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGE---------SYGLKGLFSAGEAACWDM 400 (657)
T ss_pred CCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCC---------CcccCCEEecccccccCC
Confidence 99999888999999999999876799999999999999999999999999998 7 6999999999998899
Q ss_pred CCCCccChhhhHHHHHHHHHHHHHHHHHhhhccCC--CCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccc
Q psy9575 374 HGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHN--KKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCG 451 (786)
Q Consensus 374 ~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 451 (786)
||+||||||||++|+|||++||++|+++++..... .....+.++....++..+.+.+++.++.+++++||++||+++|
T Consensus 401 hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lq~~m~~~~g 480 (657)
T PRK08626 401 HGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTALVEKFVKKQQDRIDELIAGEGKENVFEIKNEMQEIMMEKVG 480 (657)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999998553211 1111222333344555555555567889999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCccc
Q psy9575 452 VFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDIN 531 (786)
Q Consensus 452 ~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~ 531 (786)
|+|++++|++++++|++|++++..+.+.+....+|++|++++|++|||++|+++++|||+|+||||+|||+|||++||++
T Consensus 481 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R~ESRG~H~R~DyP~~~d~~ 560 (657)
T PRK08626 481 IFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRGAHAREDYPKRNDRD 560 (657)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCcCcccCchh
Confidence 99999999999999999999998888888777889999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEec--C---ceeeeccCcCCCCcccccCCCCcCCCC
Q psy9575 532 WLKHSIWYSN--G---NRIEFKPVNLKPLTVKTVHPKKHHDIK 569 (786)
Q Consensus 532 ~~~~~~~~~~--~---~~~~~~~~~~~~~~v~~~~p~~r~~~~ 569 (786)
|++++++... + ..+.++|+.+. -+.++|..|.|..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~r~y~~ 600 (657)
T PRK08626 561 WLNRTLASWPEGEALEPTLEYEPLDVM---KMELPPGFRGYGA 600 (657)
T ss_pred hceEEEEEecCCCCccceeeeccceee---ccccCCccCcCCC
Confidence 9999986642 2 57788887732 1246888877755
No 10
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.3e-96 Score=843.16 Aligned_cols=543 Identities=44% Similarity=0.723 Sum_probs=480.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCC--CCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGN--MSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~--~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~ 78 (786)
|+||++|++.|++|+||||....+|+|.+++||++++... ..+|+++.|++|+++.+.+++|+++++.+++++++.++
T Consensus 18 l~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v~~~~~~s~~~i~ 97 (566)
T PRK06452 18 LMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDAAELLSNKSGEIVM 97 (566)
T ss_pred HHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999988889999999999875421 12799999999999999999999999999999999999
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCE
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDI 158 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v 158 (786)
||+++|++|++.++|.+..+.+++| +.+|+++..+.+|..++..|.+.+++.||+|++++.+++|++++ |+|
T Consensus 98 ~L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v 169 (566)
T PRK06452 98 LLERWGALFNRQPDGRVAVRYFGGQ-------TYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKV 169 (566)
T ss_pred HHHHCCCccccCCCCcEeccCCcCc-------cCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEE
Confidence 9999999999988888777778888 88999998888999999999999988899999999999999985 999
Q ss_pred EEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCcccccc
Q psy9575 159 LGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGV 238 (786)
Q Consensus 159 ~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~ 238 (786)
+||++.+..+|+.+.|+||+|||||||++.+|..+++++.+||||+.||+++||.+.||||+||||+.+.+.++++++++
T Consensus 170 ~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~pt~~~~~~~l~~e~~ 249 (566)
T PRK06452 170 VGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTALYPSDVLISEAA 249 (566)
T ss_pred EEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEeeeEECCCCeEEEEee
Confidence 99999886678888899999999999999999889999999999999999999999999999999998888788889999
Q ss_pred ccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhc
Q psy9575 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFA 318 (786)
Q Consensus 239 ~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
+++|+++||.+|+|||++|+|..+++++||+++++|+.++.+|+|+ + +.++|+|+++++++.+.+.++.+.+.+..+.
T Consensus 250 rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~-~-~~~v~lD~~~~~~~~~~~~~~~~~~~~~~~~ 327 (566)
T PRK06452 250 RGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGF-P-GGYVGLDLTHLGEEYIKERLALAVEAAKSFA 327 (566)
T ss_pred ecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCC-C-CCeEEEEcccCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998889999999999999999998874 2 3479999999998889999998888887767
Q ss_pred CCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcc-cCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHH
Q psy9575 319 NVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKI-VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNH 397 (786)
Q Consensus 319 g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~-IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~ 397 (786)
|+|+.++++||.|++||+||||+||.+++ |+ |||||||||++|+|+||+||||||||++|+|||++||++
T Consensus 328 g~D~~~~~i~v~p~~h~~~GGi~vd~~~~---------t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~ 398 (566)
T PRK06452 328 GVDAFTEPIPVRPAQHYYMGGIDVDIDGR---------NPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRT 398 (566)
T ss_pred CCCCCCCCeeeecccCEecCCeEECCCCC---------cCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 85 999999999997799999999999999999999999999
Q ss_pred HHHHhhhccCCCCCC-cccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccc
Q psy9575 398 ILSLELKKIHNKKLP-INSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYI 476 (786)
Q Consensus 398 aa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~ 476 (786)
|+++++.....+... .+..+...+++..++...++.+|.+++++||++||+|+||+|++++|++||.+|++|++++..+
T Consensus 399 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~ 478 (566)
T PRK06452 399 VVQFLKSNPGNPTSNYEKEAEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLLNAMSEINKLRGMISNM 478 (566)
T ss_pred HHHHHhcccCCCccchhhhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHHHhh
Confidence 999986432111111 1112222222333344445677899999999999999999999999999999999999888888
Q ss_pred cccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec--CceeeeccCcCCC
Q psy9575 477 SFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN--GNRIEFKPVNLKP 554 (786)
Q Consensus 477 ~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 554 (786)
.+.|.+..+|++|++++|++||+++|+++++|||+|+||||+|||.|||++||++|++|++++.. +..+.++|+.
T Consensus 479 ~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~--- 555 (566)
T PRK06452 479 YVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHTIAYLRGNTVEVTFKPVK--- 555 (566)
T ss_pred ccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCchhhccEEEEEecCCCceeeecCcc---
Confidence 77777777899999999999999999999999999999999999999999999999999987653 4567777777
Q ss_pred CcccccCCCCcCC
Q psy9575 555 LTVKTVHPKKHHD 567 (786)
Q Consensus 555 ~~v~~~~p~~r~~ 567 (786)
+.+++|..|.|
T Consensus 556 --~~~~~~~~~~~ 566 (566)
T PRK06452 556 --ITRWKPEPRVY 566 (566)
T ss_pred --ccccCCCCCCC
Confidence 66788876543
No 11
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.9e-95 Score=837.67 Aligned_cols=556 Identities=50% Similarity=0.861 Sum_probs=486.6
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++. ++|+||||....+|+|.+++||+++..+..++|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 18 l~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~~~~~~~~~~i~~L 96 (583)
T PRK08205 18 MRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAEIMAKEAIDAVLDL 96 (583)
T ss_pred HHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5799999987 899999999888888999999999877643489999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCC---CC
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSE---GD 157 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~---g~ 157 (786)
++||++|++..+|.+..+.+++|+..+...+.+|..+..+.+|..++..|.+.+++.||+|++++.+++|+++++ |+
T Consensus 97 ~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~ 176 (583)
T PRK08205 97 EKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPV 176 (583)
T ss_pred HHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCc
Confidence 999999999888888878889885433333557888888889999999999999999999999999999998743 79
Q ss_pred EEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccc
Q psy9575 158 ILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237 (786)
Q Consensus 158 v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~ 237 (786)
|+|+++++..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+...+++++++
T Consensus 177 v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~~~~~l~~e~ 256 (583)
T PRK08205 177 AAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQFHPTGLAGLGILISEA 256 (583)
T ss_pred EEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccceEEecceecCCceEeeec
Confidence 99999987778888889999999999999999998999999999999999999999999999999999887778888999
Q ss_pred cccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhh
Q psy9575 238 VRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKF 317 (786)
Q Consensus 238 ~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~ 317 (786)
++++|++++|.+|+||+++|+|...++++|++++++++.++.+++++.+.+.++|+|+++++++.+++++|.+.++++.+
T Consensus 257 ~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~ 336 (583)
T PRK08205 257 ARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTY 336 (583)
T ss_pred ccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCCCEEEEecccCChHHHHHHcchHHHHHHHH
Confidence 99999999999999999999998889999999999999999988875334457999999999999999999999888876
Q ss_pred cCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHH
Q psy9575 318 ANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNH 397 (786)
Q Consensus 318 ~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~ 397 (786)
.|+||.++++||.|.+||+||||.||.+++|++.++ |+|||||||||++++|+||+|||||++|++|+|||++||++
T Consensus 337 ~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~~~---t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~ 413 (583)
T PRK08205 337 LGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRDNT---TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIA 413 (583)
T ss_pred cCCCcCCCceEEEeeeeEECCCeeECCCceEecCCC---CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988 99999999999997799999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhcccc
Q psy9575 398 ILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477 (786)
Q Consensus 398 aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~ 477 (786)
|+++++... ..+.+..........+..+....+..+|.+++++||++||+++|++|++++|+.||.+|++|++++..+.
T Consensus 414 aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 492 (583)
T PRK08205 414 AAEYARGAD-FVDLPENPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQALTDIHALKERYKRIT 492 (583)
T ss_pred HHHHhhccC-ccCCchhhHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHhc
Confidence 999975431 1122221211222233333333334678899999999999999999999999999999999998888777
Q ss_pred ccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec------CceeeeccCc
Q psy9575 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN------GNRIEFKPVN 551 (786)
Q Consensus 478 ~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~------~~~~~~~~~~ 551 (786)
+.+....+|++|++++|++||+++|+++++|||+|+||||+|||.|||++||++|++|+++++. +..+.++|+.
T Consensus 493 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (583)
T PRK08205 493 VQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRDDVNYMKHTMAYKEGTDLLSDIRLDYKPVV 572 (583)
T ss_pred ccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcCccccceEEEEEecCCCcCCcceeeeccce
Confidence 7777677899999999999999999999999999999999999999999999999999887653 1345556555
Q ss_pred CCCCcccccCCCCcC
Q psy9575 552 LKPLTVKTVHPKKHH 566 (786)
Q Consensus 552 ~~~~~v~~~~p~~r~ 566 (786)
+.+++|..|.
T Consensus 573 -----~~~~~~~~~~ 582 (583)
T PRK08205 573 -----QTRYEPMERK 582 (583)
T ss_pred -----eeeeCCCCCC
Confidence 5567775443
No 12
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=100.00 E-value=1.1e-95 Score=834.43 Aligned_cols=543 Identities=42% Similarity=0.730 Sum_probs=484.3
Q ss_pred ChHhhhcHhC--CCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQE--GLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~--G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~ 78 (786)
|+||++|+++ |++|+||||....+|+|.+++||++++.+. +|+++.|+.|+++.+.+++|+++++.+++++++.++
T Consensus 16 l~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~--~ds~e~~~~dt~~~g~~~~d~~lv~~l~~~s~~~i~ 93 (580)
T TIGR01176 16 LRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGD--DDSLDEHFHDTVSGGDWLCEQDVVEYFVAEAPKEMV 93 (580)
T ss_pred HHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCC--CCCHHHHHHHHHHhcCCcCcHHHHHHHHHHhHHHHH
Confidence 5899999987 589999999999889999999999887765 899999999999999999999999999999999999
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCC
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGD 157 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~ 157 (786)
||++||++|+++++|.+..+.+++| +.+|+++..+.+|..|+..|.+++.+. +|++++++.+++|+.++ |+
T Consensus 94 ~L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~ 165 (580)
T TIGR01176 94 QLEHWGCPWSRKPDGRVNVRRFGGM-------KKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GR 165 (580)
T ss_pred HHHHcCCccEecCCCceeeeccCCc-------cCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CE
Confidence 9999999999998998877888999 899999998889999999999998775 89999999999999985 99
Q ss_pred EEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccc
Q psy9575 158 ILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237 (786)
Q Consensus 158 v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~ 237 (786)
|+||++++..+|+...|+||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+++...+++++++
T Consensus 166 v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~hPt~~~~~~~l~~e~ 245 (580)
T TIGR01176 166 VCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPGTGILMTEG 245 (580)
T ss_pred EEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEEEccccCCCceEEeec
Confidence 99999988778888899999999999999999999999999999999999999999999999999999887778889999
Q ss_pred cccCCcEEEcCCCCccccccC---------Cc--cCCCCchhHHHHHHHHHHHhcCCC-CCCCCeEEEeCCCCChhHHHh
Q psy9575 238 VRGEGGILINSNGERFMERYA---------PI--LKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVMLDLRHINSETIIN 305 (786)
Q Consensus 238 ~~~~g~~~vn~~G~rf~~~~~---------p~--~~~~~~~~~~~~~i~~~~~~g~g~-~~~~~~v~ld~~~~~~~~~~~ 305 (786)
++++|++++|.+|+|||++|+ |. ..+++|||+++++|+.++.+|+++ .|.+..||+|+++++++.+.+
T Consensus 246 ~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~~~g~~v~ld~~~~~~~~~~~ 325 (580)
T TIGR01176 246 CRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDE 325 (580)
T ss_pred ccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCCCCCCEEEEEcCCCCHHHHHH
Confidence 999999999999999999985 42 258999999999999999998764 233446999999999999999
Q ss_pred HchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhH
Q psy9575 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLL 385 (786)
Q Consensus 306 ~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~ 385 (786)
++|.+.+++.++.|+|+.++++||.|++||+||||+||.+++ |+|||||||||++|+|+||+||+||+||+
T Consensus 326 ~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~---------t~i~GLyAaGe~a~~G~hGanrl~g~sl~ 396 (580)
T TIGR01176 326 RLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCE---------TRIKGLFAVGECASVGLHGANRLGSNSLA 396 (580)
T ss_pred HhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcc---------cccCCeEeeecccccCcCCCccccchhHH
Confidence 999999988886699999999999999999999999999998 99999999999987899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccC-CCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHH
Q psy9575 386 DLLVFGRSAGNHILSLELKKIH-NKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464 (786)
Q Consensus 386 ~a~v~G~~Ag~~aa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~ 464 (786)
+|+|||++||++|++++..... .......++.....++..++..+.+..+.+++++||++||+|+|++|++++|+.+|.
T Consensus 397 ~~~v~G~~ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~ 476 (580)
T TIGR01176 397 ELVVFGRRAGEAAAERAARHQKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATMESGCGIYRDGPLMQKTID 476 (580)
T ss_pred HHHHHHHHHHHHHHHhhccccccCccchhhhHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHhcccEEECHHHHHHHHH
Confidence 9999999999999998754321 111112222333445555555445567889999999999999999999999999999
Q ss_pred HHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCC--CCCCcccccceEEEEec-
Q psy9575 465 KIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDF--KNRDDINWLKHSIWYSN- 541 (786)
Q Consensus 465 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~--p~~d~~~~~~~~~~~~~- 541 (786)
+|++|++++..+.+.+....||++|++++|++||+++|+++++|||+|+||||+|||.|| |+++|++|++|++..++
T Consensus 477 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~~~d~~~~~~~~~~~~~ 556 (580)
T TIGR01176 477 KLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCTERDDVHFLKHTLAFRES 556 (580)
T ss_pred HHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCcccCchhhcceEEEEecC
Confidence 999999888888777777788999999999999999999999999999999999999999 99999999999887653
Q ss_pred --CceeeeccCcCCCCcccccCCCCcCC
Q psy9575 542 --GNRIEFKPVNLKPLTVKTVHPKKHHD 567 (786)
Q Consensus 542 --~~~~~~~~~~~~~~~v~~~~p~~r~~ 567 (786)
+..+.++|++ +.+|+|..|.|
T Consensus 557 ~~~~~~~~~~~~-----~~~~~p~~r~y 579 (580)
T TIGR01176 557 DGTLRVGYSPVK-----ITRWPPGERVY 579 (580)
T ss_pred CCcceeeecCcc-----cceeCCCCCCC
Confidence 2467777777 67889876665
No 13
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=100.00 E-value=2.7e-95 Score=834.94 Aligned_cols=545 Identities=30% Similarity=0.476 Sum_probs=476.7
Q ss_pred ChHhhhcHhCCCCEEEEEecC-CCCChhhhcccCeeeccCCC-CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVF-PTRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~-~~~g~s~~a~Ggi~a~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~ 78 (786)
|+||++|++.|++|+||||.. ..+|+|.+++||+++..+.. ..|+++.|++|+++.+.+++|+++++.+++++++.++
T Consensus 11 l~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~ 90 (603)
T TIGR01811 11 GMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKRLAVASPEIID 90 (603)
T ss_pred HHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999998 56678899999998766432 2789999999999999999999999999999999999
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC----CceEEeceEEEeeeecC
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA----KTNFFIEWMAIDLISDS 154 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~----Gv~i~~~~~v~~L~~~~ 154 (786)
||+++|++|++..+|.+..+.+++| +.+|+++..+.+|..++..|.+.+++. ||+|++++++++|++++
T Consensus 91 ~L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd 163 (603)
T TIGR01811 91 LMDAMGVPFAREYGGLLDTRSFGGV-------QVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVD 163 (603)
T ss_pred HHHHcCCEEEecCCCccccccccCc-------ccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcC
Confidence 9999999999888887777778888 889999888889999998888777553 89999999999999875
Q ss_pred CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCC----
Q psy9575 155 EGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGA---- 230 (786)
Q Consensus 155 ~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~---- 230 (786)
+|+|+||++.+..+|+.+.|.||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+...
T Consensus 164 ~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~Pt~~~~~g~~~ 243 (603)
T TIGR01811 164 GNRARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIPVDGTWQ 243 (603)
T ss_pred CCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEEeeeecCCCccc
Confidence 4799999998866788788999999999999999999999999999999999999999999999999999987653
Q ss_pred --CCccccccccCCcEEEcC------------CCCc--cccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEe
Q psy9575 231 --GVLITEGVRGEGGILINS------------NGER--FMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLD 294 (786)
Q Consensus 231 --~~~~~~~~~~~g~~~vn~------------~G~r--f~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld 294 (786)
+++++++++++|++|+|. +|+| ||.+++|..++++|||+++++|+.++++|+|+.+.++.||||
T Consensus 244 ~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~g~~~~~~~v~ld 323 (603)
T TIGR01811 244 SKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGKGVGPGENAVYLD 323 (603)
T ss_pred ccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcCCcCCCCCeEEEE
Confidence 257899999999999999 9999 888777766799999999999999999998863344569999
Q ss_pred CCCCCh----hHHHhHchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCC
Q psy9575 295 LRHINS----ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECAC 370 (786)
Q Consensus 295 ~~~~~~----~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~ 370 (786)
+++++. +.+++++|.+.+.+.++.|+|+.++||||.|++||+||||+||.+++ |+|||||||||++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~---------t~i~gL~a~Ge~~- 393 (603)
T TIGR01811 324 FSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQM---------TNIPGLFAAGECD- 393 (603)
T ss_pred cCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCc---------ccCCCEEECcccc-
Confidence 999988 78999999999999886799999999999999999999999999998 9999999999998
Q ss_pred ccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhcc-CCCCCC------cccHHHHHHHHhhhhhCCCCCCHHHHHHHHH
Q psy9575 371 VSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI-HNKKLP------INSIDIIIDRLSKLENNKGSESVQSVANDIR 443 (786)
Q Consensus 371 gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 443 (786)
+++||+|||||+||++|+|||++||++|++++.... ...... .+.++...+++..+....++.+|.+++++||
T Consensus 394 ~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq 473 (603)
T TIGR01811 394 FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALAEEQERFDRLLKMRGDENPYYLHRELG 473 (603)
T ss_pred cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 699999999999999999999999999999864321 111111 1122233344444444334457889999999
Q ss_pred HHHHhccccccCHHHHHHHHHHHHHHHHHh-ccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccC
Q psy9575 444 KTMQNYCGVFRTDKLMKNGYKKIMILDERR-KYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHN 522 (786)
Q Consensus 444 ~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~ 522 (786)
++||+++||+|++++|++||++|++|++++ +.+.+.|....+|++|.+++|++||+++|+++++|||+|+||||+|||+
T Consensus 474 ~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~H~R~ 553 (603)
T TIGR01811 474 EIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDALNRNESCGAHFRP 553 (603)
T ss_pred HHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccc
Confidence 999999999999999999999999999887 4477777777889999999999999999999999999999999999999
Q ss_pred CCC------CCCcccccceEEEEe----cCceeeeccCcCCCCcccccCCCCcCC
Q psy9575 523 DFK------NRDDINWLKHSIWYS----NGNRIEFKPVNLKPLTVKTVHPKKHHD 567 (786)
Q Consensus 523 D~p------~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~p~~r~~ 567 (786)
||| ++||++|++++++.. +.++++++||+ +.+|+|++|.|
T Consensus 554 D~P~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 603 (603)
T TIGR01811 554 EFPTPDGEAERNDEEFLKVTAWEFQGENDAPEFHYEELD-----FELVPPRKRDY 603 (603)
T ss_pred cCCCccccccCChhhhheeEEEEecCCCCCceEEeeccc-----cceeCCCCCCC
Confidence 999 888889999987653 34789999999 77899987654
No 14
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=5.6e-95 Score=833.41 Aligned_cols=549 Identities=45% Similarity=0.787 Sum_probs=488.1
Q ss_pred ChHhhhcHhCC--CCEEEEEecCCCCChhhhcccCeeeccCCCC-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEG--LNVAILSKVFPTRSHTVAAQGGISASLGNMS-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVV 77 (786)
Q Consensus 1 L~AA~~aa~~G--~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i 77 (786)
|+||++|++.| ++|+||||....+|+|.+++||+.+.....+ .|+++.|+.|+++.+.+++|+++++.+++++++.+
T Consensus 16 l~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~~v~~l~~~a~~~i 95 (575)
T PRK05945 16 CRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQDAVAILTQEAPDVI 95 (575)
T ss_pred HHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 58999999874 8999999998888889999999988765432 68999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCC
Q psy9575 78 YELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGD 157 (786)
Q Consensus 78 ~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~ 157 (786)
+||+++|++|++.++|.+..+.+++| +.+|+.+..+.+|..++..|.+.+++.||+|++++.+++|+.++ |+
T Consensus 96 ~~L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~ 167 (575)
T PRK05945 96 IDLEHLGVLFSRLPDGRIAQRAFGGH-------SHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILED-NQ 167 (575)
T ss_pred HHHHHcCCceEECCCCcEeecccccc-------ccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CE
Confidence 99999999999988888877788898 88999999999999999999999999999999999999999885 99
Q ss_pred EEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccc
Q psy9575 158 ILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237 (786)
Q Consensus 158 v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~ 237 (786)
|+|+++++..+|+...|.|++|||||||++++|..++++..+||||+.||+++||.+.+|||+||||+++.+.+++++++
T Consensus 168 v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf~pt~~~~~~~l~~~~ 247 (575)
T PRK05945 168 AKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHPTGLYPVGVLISEA 247 (575)
T ss_pred EEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEEeeeeecCCCeEEeee
Confidence 99999888778887789999999999999999988999999999999999999999999999999999888888888899
Q ss_pred cccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCC----CCCeEEEeCCCCChhHHHhHchhHHHH
Q psy9575 238 VRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGP----NKDHVMLDLRHINSETIINRLPSILEI 313 (786)
Q Consensus 238 ~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~----~~~~v~ld~~~~~~~~~~~~~~~~~~~ 313 (786)
++++|+++||.+|+||+++|+|..+++++||+++++++.++.+|+++.+ .+.++|+|+++++.+.+..++|.+.+.
T Consensus 248 ~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~ 327 (575)
T PRK05945 248 VRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEE 327 (575)
T ss_pred cccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCEEEEECCCCCHHHHHHHhHHHHHH
Confidence 9999999999999999999999888999999999999999999887522 124699999999988888888876665
Q ss_pred HHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHH
Q psy9575 314 GNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRS 393 (786)
Q Consensus 314 ~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~ 393 (786)
+.+..|+|+.++|+||.|.+||+||||+||.++||++.++ |+|||||||||++|+|+||+|||||++|++|+|||++
T Consensus 328 l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~~~---t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~ 404 (575)
T PRK05945 328 AHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSAD---GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRR 404 (575)
T ss_pred HHHHhCcCCCCceEEeeccceecCCCeeECCCceeccCCC---CccCCeEeeeccccccccccccccchhHHHHHHHHHH
Confidence 5555799999999999999999999999999999999888 9999999999999779999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCccc-HHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHH
Q psy9575 394 AGNHILSLELKKIHNKKLPINS-IDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDER 472 (786)
Q Consensus 394 Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~ 472 (786)
||++|+++++... .+..+.+. .+...+++..+++..++.++.+++++||++||+|+|++|++++|+++|++|++|+++
T Consensus 405 Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~ 483 (575)
T PRK05945 405 TGAAIAEYVQGRK-LPEVDEQRYLKEAKQRIQALLDQSGTYRINQLRQQFQDCMTDHCGVFRTEEIMQEGLEKIQQLKQQ 483 (575)
T ss_pred HHHHHHHHhhccC-CCCcchhhHHHHHHHHHhhhhccccccChHHHHHHHHHHHHcCccEEECHHHHHHHHHHHHHHHHH
Confidence 9999999885432 12222211 233344555555544566789999999999999999999999999999999999998
Q ss_pred hccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec--CceeeeccC
Q psy9575 473 RKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN--GNRIEFKPV 550 (786)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~--~~~~~~~~~ 550 (786)
+..+.+.+....+|++|++++|++||+++|+++++|||+|+||||+|||.|||++||++|++|++++++ .+++.++|+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~ 563 (575)
T PRK05945 484 YEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQNFLKHTLAYYSPAGIDIQYMPV 563 (575)
T ss_pred HHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCchhhhceEEEEecCCCceEEeecc
Confidence 888888887778999999999999999999999999999999999999999999999999999987653 357888888
Q ss_pred cCCCCcccccCCCCcC
Q psy9575 551 NLKPLTVKTVHPKKHH 566 (786)
Q Consensus 551 ~~~~~~v~~~~p~~r~ 566 (786)
. +.+|+|..|.
T Consensus 564 ~-----~~~~~~~~~~ 574 (575)
T PRK05945 564 V-----ITMFEPQERK 574 (575)
T ss_pred e-----eeeeCCCCCC
Confidence 7 5678886554
No 15
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=9.1e-95 Score=830.75 Aligned_cols=544 Identities=31% Similarity=0.482 Sum_probs=474.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC-CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++|+++|++|+||||....+|+|.+++||++++.+.. .+|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 16 l~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v~~~~~~s~~~i~~ 95 (589)
T PRK08641 16 LMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPVKAMCEAAPGIIHL 95 (589)
T ss_pred HHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999998899999999999887532 27999999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCC----ceEEeceEEEeeeecCC
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAK----TNFFIEWMAIDLISDSE 155 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~G----v~i~~~~~v~~L~~~~~ 155 (786)
|+++|++|++..+|.+..+.+++| +.+|+++..+.+|..++..|.+.+++.+ |++++++.+++|+++++
T Consensus 96 L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~ 168 (589)
T PRK08641 96 LDRMGVMFNRTPEGLLDFRRFGGT-------LHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE 168 (589)
T ss_pred HHHcCCCcccCCCCcEeeeccCCe-------ecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC
Confidence 999999999888888877788888 8889988888899999999999887643 88999999999998644
Q ss_pred CCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCC--Cc
Q psy9575 156 GDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAG--VL 233 (786)
Q Consensus 156 g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~--~~ 233 (786)
|+|+||++++..+++.+.|.||+|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+.+.+ ++
T Consensus 169 g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q~hPt~~~~~~~~~l 248 (589)
T PRK08641 169 GVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTAIPGDDKLRL 248 (589)
T ss_pred CEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEEEeeeeecCCCcceE
Confidence 8999999998777888889999999999999999999999999999999999999999999999999999876643 47
Q ss_pred cccccccCCcE-EEcCCCCc--cccccCCccCCCCchhHHHHHHHHHH-HhcCCCCCCCCeEEEeCCCCChhHHHhHchh
Q psy9575 234 ITEGVRGEGGI-LINSNGER--FMERYAPILKDLAPRDFVSRAMDQEI-KEGRGCGPNKDHVMLDLRHINSETIINRLPS 309 (786)
Q Consensus 234 ~~~~~~~~g~~-~vn~~G~r--f~~~~~p~~~~~~~~~~~~~~i~~~~-~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~ 309 (786)
++++++++|+. ++|.+|+| ||++++|..+++++||+++++++.++ .+++++ +....+|+|+++++.+.+.++++.
T Consensus 249 ~~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~-~g~~~v~ld~~~~~~e~l~~~~~~ 327 (589)
T PRK08641 249 MSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGI-NGENMVYLDLSHKDPKELDIKLGG 327 (589)
T ss_pred eeeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCC-CCCceEEEEcCCCCHHHHHHHHHH
Confidence 89999999885 55899999 77877787789999999999999987 456553 222459999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHH
Q psy9575 310 ILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLV 389 (786)
Q Consensus 310 ~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v 389 (786)
+.+.+..+.|+|+.++|+||.|++||+||||+||.+++ |+|||||||||++ +|+||+||||||||++|+|
T Consensus 328 ~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~---------t~I~GLyAaGE~~-~g~hGanrlggnsl~~~lv 397 (589)
T PRK08641 328 ILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQM---------TNIPGLFAAGECD-YSYHGANRLGANSLLSAIY 397 (589)
T ss_pred HHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCC---------eECCCEEECcccc-cCCCCCCccchhhHHHHHH
Confidence 88888776699999999999999999999999999987 9999999999998 6999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCC-CCCCc----ccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHH
Q psy9575 390 FGRSAGNHILSLELKKIHN-KKLPI----NSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464 (786)
Q Consensus 390 ~G~~Ag~~aa~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~ 464 (786)
||++||++|+++++..... .+.+. +..+....++..+...++..++.+++++||++||+|+||+|++++|++||+
T Consensus 398 ~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~ 477 (589)
T PRK08641 398 GGMVAGPNAVEYIKGLGKSADDVSSSVFEQALKQEQEKFDNILSMDGTENAYVLHKELGEWMTDNVTVVRENDKLLETDE 477 (589)
T ss_pred HHHHHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCCEEECHHHHHHHHH
Confidence 9999999999997543110 11111 112222333444443333456788999999999999999999999999999
Q ss_pred HHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec---
Q psy9575 465 KIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN--- 541 (786)
Q Consensus 465 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~--- 541 (786)
+|++|+++++.+.+.|....+|++|..++|++|||++|+++++|||+|+||||+|||+|||++||++|++++++...
T Consensus 478 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~ 557 (589)
T PRK08641 478 KIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERNDENWLKTTMATYTPEG 557 (589)
T ss_pred HHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccCchhhhceEEEEecCCC
Confidence 99999988888887887788899999999999999999999999999999999999999999999999999886532
Q ss_pred -CceeeeccCcCCCCcccccCCCCcCC
Q psy9575 542 -GNRIEFKPVNLKPLTVKTVHPKKHHD 567 (786)
Q Consensus 542 -~~~~~~~~~~~~~~~v~~~~p~~r~~ 567 (786)
..+++++|++ +.+++|..|.|
T Consensus 558 ~~~~~~~~~v~-----~~~~~~~~~~~ 579 (589)
T PRK08641 558 EEPEFSYEDVD-----TSLIPPRKRDY 579 (589)
T ss_pred CCceEEeeccc-----cceeCCccccC
Confidence 3588889888 56788876665
No 16
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=5.9e-94 Score=822.94 Aligned_cols=543 Identities=41% Similarity=0.725 Sum_probs=482.5
Q ss_pred ChHhhhcHhC--CCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQE--GLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~--G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~ 78 (786)
|+||++|++. |++|+||||....+|+|.+++||++++... +|+++.|+.|+++.+.+++|+++++.+++++++.++
T Consensus 17 l~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~--~ds~e~~~~d~~~~g~~~~d~~~v~~~~~~s~~~i~ 94 (582)
T PRK09231 17 LRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQD--HDSFDYHFHDTVAGGDWLCEQDVVEYFVHHCPTEMT 94 (582)
T ss_pred HHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCC--CCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 5899999987 479999999988889999999999887654 899999999999999999999999999999999999
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCC
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGD 157 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~ 157 (786)
||++||++|+++++|.+..+.+++| +.+|+++..+.+|..++..|.+++.+. +|++++++.+++|+.++ |+
T Consensus 95 ~L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~ 166 (582)
T PRK09231 95 QLEQWGCPWSRKPDGSVNVRRFGGM-------KIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GH 166 (582)
T ss_pred HHHHcCCCcccCCCCceeeeccccc-------cCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CE
Confidence 9999999999988898877788999 889999998889999999999988875 89999999999999986 99
Q ss_pred EEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccc
Q psy9575 158 ILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237 (786)
Q Consensus 158 v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~ 237 (786)
|+||++++..+|+...|+||+|||||||++++|.+++++..+||||+.||+++||.+.||||+||||+.+...+++++++
T Consensus 167 v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~~~~~l~~e~ 246 (582)
T PRK09231 167 VRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLPGSGILMTEG 246 (582)
T ss_pred EEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceeeecceeCCCCceeeec
Confidence 99999988778888899999999999999999988899999999999999999999999999999999988788888999
Q ss_pred cccCCcEEEcCCCCccccccC---------Cc--cCCCCchhHHHHHHHHHHHhcCCCC-CCCCeEEEeCCCCChhHHHh
Q psy9575 238 VRGEGGILINSNGERFMERYA---------PI--LKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINSETIIN 305 (786)
Q Consensus 238 ~~~~g~~~vn~~G~rf~~~~~---------p~--~~~~~~~~~~~~~i~~~~~~g~g~~-~~~~~v~ld~~~~~~~~~~~ 305 (786)
++++|++|||.+|+|||++|+ |. ..++++||+++++|+.++.+|+++. +.+..||+|+++++++.+.+
T Consensus 247 ~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~~~~g~~v~ld~~~~~~~~~~~ 326 (582)
T PRK09231 247 CRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHE 326 (582)
T ss_pred ccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCccCCCCCEEEEECCcCCHHHHHH
Confidence 999999999999999999884 43 2489999999999999999887641 12335999999999999999
Q ss_pred HchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhH
Q psy9575 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLL 385 (786)
Q Consensus 306 ~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~ 385 (786)
++|.+.+++.+..|+|+.++++++.|..||++|||+||.+++ |+|||||||||++++|+||+||+||+||+
T Consensus 327 ~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~i~GLyAaGe~~~~g~hGanrlggnsl~ 397 (582)
T PRK09231 327 RLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCE---------TRIKGLFAVGECSSVGLHGANRLGSNSLA 397 (582)
T ss_pred HhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCc---------cccCCEEecccccccccCCCCCcchhHHH
Confidence 999999999886699999999999999999999999999998 99999999999986799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC-CCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHH
Q psy9575 386 DLLVFGRSAGNHILSLELKKIHN-KKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464 (786)
Q Consensus 386 ~a~v~G~~Ag~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~ 464 (786)
+|+|||++||++|+++++..... .......++....++..++..+++.+|.+++++||++||+++|++|++++|+++|.
T Consensus 398 ~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~ 477 (582)
T PRK09231 398 ELVVFGRVAGEQAAERAATAGPGNEAALDAQAADVEQRLKALVNQEGGENWAKIRDEMGLSMEEGCGIYRTPELMQKTID 477 (582)
T ss_pred HHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhcCcEEECHHHHHHHHH
Confidence 99999999999999998653211 11111122333444555555555678999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCC--CCCCCcccccceEEEEec-
Q psy9575 465 KIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND--FKNRDDINWLKHSIWYSN- 541 (786)
Q Consensus 465 ~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D--~p~~d~~~~~~~~~~~~~- 541 (786)
+|++|++++..+.+.|....+|++|++++|++||+++|+++++|||+|+||||+|||.| ||++||.+|++|+++.++
T Consensus 478 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~~~d~~~~~~~~~~~~~ 557 (582)
T PRK09231 478 KLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCTERDDVNFLKHTLAFYNA 557 (582)
T ss_pred HHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCCccChhhhceEEEEEecC
Confidence 99999988888888888888999999999999999999999999999999999999999 999999999999887542
Q ss_pred C--ceeeeccCcCCCCcccccCCCCcCC
Q psy9575 542 G--NRIEFKPVNLKPLTVKTVHPKKHHD 567 (786)
Q Consensus 542 ~--~~~~~~~~~~~~~~v~~~~p~~r~~ 567 (786)
+ ..+.++|+. +.+++|..|.|
T Consensus 558 ~~~~~~~~~~~~-----~~~~~p~~r~~ 580 (582)
T PRK09231 558 DGTPRIEYSDVK-----ITKSPPAKRVY 580 (582)
T ss_pred CCCcceeecCcc-----ccccCCccCCC
Confidence 2 567777766 66788877665
No 17
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.7e-93 Score=824.23 Aligned_cols=544 Identities=28% Similarity=0.445 Sum_probs=470.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCC-CCChhhhcccCeeeccCCC-CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFP-TRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~-~~g~s~~a~Ggi~a~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~ 78 (786)
|+||++|++.|++|+||||... .+|+|.+++||+++..+.. .+|+++.|+.|+++.+.+++|+++++.+++++++.++
T Consensus 48 l~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~ 127 (640)
T PRK07573 48 ASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIID 127 (640)
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999998654 4578889999998776432 2799999999999999999999999999999999999
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHH----HHHHHHHhcCCceEEeceEEEeeeecC
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALL----HTLYQRNLHAKTNFFIEWMAIDLISDS 154 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~----~~L~~~~~~~Gv~i~~~~~v~~L~~~~ 154 (786)
||+++|++|+++.+|.+..+.+++| +.+|.++..+.+|..++ +.|.+.+++.||+|++++.+++|+.++
T Consensus 128 wL~~~GV~f~~~~~g~~~~~~~ggh-------s~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~ 200 (640)
T PRK07573 128 QCVAQGVPFAREYGGLLANRSFGGA-------QVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVD 200 (640)
T ss_pred HHHhcCCccccCCCCceeccccCCc-------ccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeC
Confidence 9999999999877787777778888 88999998888898887 556667777899999999999999986
Q ss_pred CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCC---
Q psy9575 155 EGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAG--- 231 (786)
Q Consensus 155 ~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~--- 231 (786)
|+|+||++.+..+|+.+.|.||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+...+
T Consensus 201 -g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~me~vq~hPt~~~~~g~~~ 279 (640)
T PRK07573 201 -GRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANPCFTQIHPTCIPVSGDYQ 279 (640)
T ss_pred -CEEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCccceeeccccccCCCccc
Confidence 9999999988667888889999999999999999999999999999999999999999999999999999876433
Q ss_pred ---CccccccccCCcEEEcCCC------------Cc--cccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEe
Q psy9575 232 ---VLITEGVRGEGGILINSNG------------ER--FMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLD 294 (786)
Q Consensus 232 ---~~~~~~~~~~g~~~vn~~G------------~r--f~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld 294 (786)
++++++++++|++|||.+| +| ||.+|+|..++++|||+++++|+.++++|+|+.+.+..||||
T Consensus 280 ~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~~~~~~f~~~~~~~~~el~~rd~v~rai~~e~~~grg~~~~~~~v~ld 359 (640)
T PRK07573 280 SKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLERRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLD 359 (640)
T ss_pred ccceEEeccccCCceEEEcCcccccccccccccchhhhchhhhCccccCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEe
Confidence 5789999999999999984 56 999999988899999999999999999999874444579999
Q ss_pred CCC----CChhHHHhHchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCC
Q psy9575 295 LRH----INSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECAC 370 (786)
Q Consensus 295 ~~~----~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~ 370 (786)
+++ ++.+.+.++||.+.+.+..+.|+|+.++||||.|++||+||||+||.+++ |+|||||||||++
T Consensus 360 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~~~~i~v~p~~hy~~GGi~vd~~~~---------T~i~GLyAaGE~~- 429 (640)
T PRK07573 360 FADAIKRLGKDVIRERYGNLFDMYERITGENPYETPMRIYPAVHYTMGGLWVDYNLM---------STIPGLFVIGEAN- 429 (640)
T ss_pred CchhhhhcCHHHHHHhChHHHHHHHHhcCCCcccCeeeeecccceecCCEEECCCCc---------cccCCEEECcccc-
Confidence 985 67788999999999998876699999999999999999999999999998 9999999999996
Q ss_pred ccCCCCCccChhhhHHHHHHHHHHHHH-HHHHhhhccCCCCCC------cccHHHHHHHHhhhhhCCCCCCHHHHHHHHH
Q psy9575 371 VSVHGANRLGTNSLLDLLVFGRSAGNH-ILSLELKKIHNKKLP------INSIDIIIDRLSKLENNKGSESVQSVANDIR 443 (786)
Q Consensus 371 gg~~Ga~rlgg~~l~~a~v~G~~Ag~~-aa~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 443 (786)
+|+||+||||||||++|+|||++||++ |+++++........+ ....+....++..+....++.+|.+++++||
T Consensus 430 ~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 509 (640)
T PRK07573 430 FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVSTDHPEFKEAEAEVQDRIDRLLNIKGKRTVDSFHRELG 509 (640)
T ss_pred ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccCCccccchhhHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 799999999999999999999999988 777775431111110 1122233344444444334567889999999
Q ss_pred HHHHhccccccCHHHHHHHHHHHHHHHHHhc-cccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccC
Q psy9575 444 KTMQNYCGVFRTDKLMKNGYKKIMILDERRK-YISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHN 522 (786)
Q Consensus 444 ~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~ 522 (786)
++||+|+||+|++++|++||++|++|++++. .+.+.+....+|+++.+++|++||+++|+++++|||+|+||||+|||.
T Consensus 510 ~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~A~~i~~aAl~R~ESRG~H~R~ 589 (640)
T PRK07573 510 KIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGELMCRDALHREESCGGHFRE 589 (640)
T ss_pred HHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCc
Confidence 9999999999999999999999999988764 466666666789999999999999999999999999999999999999
Q ss_pred CCC------CCCcccccceEEEE-e---cCceeeeccCcCCCCcccccCCCCcCC
Q psy9575 523 DFK------NRDDINWLKHSIWY-S---NGNRIEFKPVNLKPLTVKTVHPKKHHD 567 (786)
Q Consensus 523 D~p------~~d~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~v~~~~p~~r~~ 567 (786)
||| ++||++|.++++.+ + ++++++++|++ +.+++|+.|.|
T Consensus 590 D~P~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 639 (640)
T PRK07573 590 EHQTEDGEALRDDENFAYVAAWEYKGDGKEPVLHKEPLE-----FENVKLAQRSY 639 (640)
T ss_pred cCCCCccccccChhhhceEEEEEecCCCCCceEEeeccc-----cceeCCCCCCC
Confidence 999 78888999988542 2 24689999988 78899987765
No 18
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3e-93 Score=820.37 Aligned_cols=549 Identities=45% Similarity=0.761 Sum_probs=484.3
Q ss_pred ChHhhhcHhCC---CCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEG---LNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVV 77 (786)
Q Consensus 1 L~AA~~aa~~G---~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i 77 (786)
|+||++|++.| ++|+||||....+|+|.+++||+++......+|+++.|+.|+++.+.+++|+++++.+++++++.+
T Consensus 18 l~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i 97 (577)
T PRK06069 18 LRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQDAVEVFVREAPEEI 97 (577)
T ss_pred HHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 58999999998 899999999998889999999998876532369999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCC
Q psy9575 78 YELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEG 156 (786)
Q Consensus 78 ~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g 156 (786)
+||+++|++|++.++|++..+.++|| +.+|+.+..+.+|..++..|.+++++ .||++++++.+++|++++ +
T Consensus 98 ~~L~~~Gv~f~~~~~G~~~~~~~~g~-------~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g 169 (577)
T PRK06069 98 RFLDHWGVPWSRRPDGRISQRPFGGM-------SFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-G 169 (577)
T ss_pred HHHHHcCCeeEecCCCcEeeeecCCc-------ccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-C
Confidence 99999999999988998877888898 89999999999999999999999877 599999999999999886 9
Q ss_pred CEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCcccc
Q psy9575 157 DILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITE 236 (786)
Q Consensus 157 ~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~ 236 (786)
+|+|+++++..+|+...|.||+|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+.+.++++++
T Consensus 170 ~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~~q~~pt~~~~~g~l~~e 249 (577)
T PRK06069 170 VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPTGLVPSGILITE 249 (577)
T ss_pred EEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcceeEeeeeeCCCCcEEEe
Confidence 99999998877887778999999999999999999888888999999999999999999999999999998888888899
Q ss_pred ccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCC-C-CCeEEEeCCCCChhHHHhHchhHHHHH
Q psy9575 237 GVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGP-N-KDHVMLDLRHINSETIINRLPSILEIG 314 (786)
Q Consensus 237 ~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~-~-~~~v~ld~~~~~~~~~~~~~~~~~~~~ 314 (786)
+++++|+++||.+|+||+++|+|..+++++|++++++++.++.+|++... . ..++|+|+++++++.+.+++|.+.+++
T Consensus 250 ~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~v~ld~~~~~~~~~~~~~~~i~~~~ 329 (577)
T PRK06069 250 AARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCYVGLDLRHLGEEKINERLPLIREIA 329 (577)
T ss_pred eccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceEEEEecccCCHHHHHHHhhHHHHHH
Confidence 99999999999999999999999888999999999999999999887421 1 135999999999888999999999999
Q ss_pred HhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHH
Q psy9575 315 NKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSA 394 (786)
Q Consensus 315 ~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~A 394 (786)
.++.|+|+.++|++|.|.+|||||||+||.++|+.+.++ ++|||||||||++|+|+||+||+||+||++|+|||++|
T Consensus 330 ~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~~g---~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~A 406 (577)
T PRK06069 330 KKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTADG---EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIA 406 (577)
T ss_pred HHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCCCC---CEeCCeEeccccccccccccccchhhHHHHHHHHHHHH
Confidence 886799999999999999999999999999999998888 89999999999997789999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCccc-HHHHHHHH-hhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHH
Q psy9575 395 GNHILSLELKKIHNKKLPINS-IDIIIDRL-SKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDER 472 (786)
Q Consensus 395 g~~aa~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~ 472 (786)
|++|+++++... ..+..... .......+ ..+.....+.+|.+++++||++||+++||+|++++|+.||.+|++|+++
T Consensus 407 g~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~ 485 (577)
T PRK06069 407 GEQAAEYALKRP-APSSPVEKLAEKEEKRIFDKLLKKEGGEPSYEIRRELNDIMDKNFGIFRDESGLAEALKKIKKLRER 485 (577)
T ss_pred HHHHHHHhhccC-CCCCcchhhhhHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHH
Confidence 999999986432 11111111 11222222 2223333456788999999999999999999999999999999999988
Q ss_pred hccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec--CceeeeccC
Q psy9575 473 RKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN--GNRIEFKPV 550 (786)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~--~~~~~~~~~ 550 (786)
+..+.+.+....+|++|.+++|++||+++|+++++|||+|+||||+|||+|||++||++|.++++++++ +..+.++|+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (577)
T PRK06069 486 YKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDENWLKHTLAYYTGGGPKVTYTPV 565 (577)
T ss_pred HHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCchhhhceEEEEEcCCCceeeecCc
Confidence 888888887788999999999999999999999999999999999999999999999999999887652 246777776
Q ss_pred cCCCCcccccCCCCcC
Q psy9575 551 NLKPLTVKTVHPKKHH 566 (786)
Q Consensus 551 ~~~~~~v~~~~p~~r~ 566 (786)
+ +..|+|..|.
T Consensus 566 ~-----~~~~~~~~~~ 576 (577)
T PRK06069 566 T-----ITKWKPEERK 576 (577)
T ss_pred c-----ccccCCCCCC
Confidence 6 4456765443
No 19
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=100.00 E-value=1.1e-90 Score=800.88 Aligned_cols=545 Identities=55% Similarity=0.935 Sum_probs=479.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCC-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMS-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++|+++|++|+||||....+|+|.+++||+++.....+ +|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 12 l~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~~~~~s~~~i~~ 91 (566)
T TIGR01812 12 LRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEYMCQEAPKAILE 91 (566)
T ss_pred HHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998888889999999988765332 6899999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
|+++|++|++..+|.+....+++| +.+|..+..+.+|..++..|.+.+++.||++++++.+++|+.++ |+|+
T Consensus 92 L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~ 163 (566)
T TIGR01812 92 LEHWGVPFSRTPDGRIAQRPFGGH-------SKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVR 163 (566)
T ss_pred HHHcCCcceecCCCcEeecccccc-------ccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEE
Confidence 999999999888888776778888 88899888888999999999999998999999999999999986 9999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~ 239 (786)
|+++++..+|+...|+||+|||||||++.+|..+++++.+||||+.||+++||.+.+|||+||||+.+.+.+++++++++
T Consensus 164 Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~~~~~~~~~e~~~ 243 (566)
T TIGR01812 164 GVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGILITEGCR 243 (566)
T ss_pred EEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeeeCCCCcEEecccc
Confidence 99998767787778999999999999999999889999999999999999999999999999999988777888889999
Q ss_pred cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCC-CCCCeEEEeCCCCChhHHHhHchhHHHHHHhhc
Q psy9575 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINSETIINRLPSILEIGNKFA 318 (786)
Q Consensus 240 ~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~-~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
+.|+++||.+|+||+++|+|..+++++|++++++++.++.+++++. +.+.++|+|+++++++.+..++|.+.+++.+..
T Consensus 244 ~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 323 (566)
T TIGR01812 244 GEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEKIEERLPQIRELAKYFA 323 (566)
T ss_pred CCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHHHchHHHHHHHHHc
Confidence 9999999999999999999988899999999999999998877641 123469999999998888999999999988856
Q ss_pred CCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 319 NVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 319 g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
|+|+.+++++|.|.+||++|||+||.++||++. |+|||||||||++|+|+||+||+||++|++|+|||++||++|
T Consensus 324 g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~-----t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~a 398 (566)
T TIGR01812 324 GVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICE-----TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAA 398 (566)
T ss_pred CCCCCCCceeeehhhcccCCCeEECcCcccccC-----cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986 899999999999977999999999999999999999999999
Q ss_pred HHHhhhcc-CCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhcccc
Q psy9575 399 LSLELKKI-HNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477 (786)
Q Consensus 399 a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~ 477 (786)
+++++... ....+....+......+..+....++.++.+++++||++||+++|++|++++|++++.+|++|++++..+.
T Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~ 478 (566)
T TIGR01812 399 AEYAAKTGNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRERYKNVR 478 (566)
T ss_pred HHHHhhcCCCccccchhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHHHHHHHHHHHHHHHHhhc
Confidence 99985431 11112222222222333333332245678899999999999999999999999999999999998887777
Q ss_pred ccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec---CceeeeccCcCCC
Q psy9575 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN---GNRIEFKPVNLKP 554 (786)
Q Consensus 478 ~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~ 554 (786)
+.+....+|++|++++|++||+++|+++++|||+|+||||+|||.|||++||++|+++++++++ ++++.++|++
T Consensus 479 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 555 (566)
T TIGR01812 479 INDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLAYYDNPGTPRLEYKPVT--- 555 (566)
T ss_pred ccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcccccceEEEEecCCCcceeeeccce---
Confidence 7777777899999999999999999999999999999999999999999999999999887653 2567677766
Q ss_pred CcccccCCC
Q psy9575 555 LTVKTVHPK 563 (786)
Q Consensus 555 ~~v~~~~p~ 563 (786)
+..+.|.
T Consensus 556 --~~~~~~~ 562 (566)
T TIGR01812 556 --ITKYEPA 562 (566)
T ss_pred --ecccCCC
Confidence 3445554
No 20
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.1e-90 Score=801.49 Aligned_cols=530 Identities=38% Similarity=0.629 Sum_probs=463.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC-CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++|++.|++|+||||....+|+|.+++||+++..+.. .+|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 21 l~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~v~~~~~~s~~~i~~ 100 (626)
T PRK07803 21 LRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRMAELHAKEAPDRVWE 100 (626)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHhHHHHHH
Confidence 58999999999999999999888888999999999886543 26899999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC--------C-----ceEEeceE
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA--------K-----TNFFIEWM 146 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~--------G-----v~i~~~~~ 146 (786)
|+++|++|++..+|++.++.+++| +.+|++|..+.+|..++..|.+.+++. | |+|++++.
T Consensus 101 L~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~ 173 (626)
T PRK07803 101 LETYGALFDRTKDGRISQRNFGGH-------TYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECT 173 (626)
T ss_pred HHHCCCceEecCCCceeeeecCCc-------ccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCE
Confidence 999999999988898887888999 899999998899999999999998876 7 99999999
Q ss_pred EEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCcccccccc
Q psy9575 147 AIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTG 226 (786)
Q Consensus 147 v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~ 226 (786)
+++|++++ |+|+|+++++..+|+.+.|.||+|||||||++++|..++++..+||||+.||+++||.+.+|||+||||++
T Consensus 174 v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~q~~Pt~ 252 (626)
T PRK07803 174 ITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINMEFVQFHPTG 252 (626)
T ss_pred EEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcEeCCcceeecccc
Confidence 99999885 99999999887788888899999999999999999999999999999999999999999999999999997
Q ss_pred ccC----CCCccccccccCCcEEEcCCCCccccccCCc-------------------------cCCCCchhHHHHHHHHH
Q psy9575 227 VAG----AGVLITEGVRGEGGILINSNGERFMERYAPI-------------------------LKDLAPRDFVSRAMDQE 277 (786)
Q Consensus 227 ~~~----~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~-------------------------~~~~~~~~~~~~~i~~~ 277 (786)
+.. .+++++++++++|++|+|.+|+|||++|+|. ..++.||+++++++..+
T Consensus 253 ~~~~~~~~~~li~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~prd~v~~ai~~e 332 (626)
T PRK07803 253 MVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNNRRPPELLPRDEVARAINSE 332 (626)
T ss_pred cccCCCcCceEEeeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhcccccccccccccHHHHHHHHHHH
Confidence 632 4578899999999999999999999998875 24788999999999999
Q ss_pred HHhcCCCCCCCCeEEEeC-CCCChhHHHhHchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCC
Q psy9575 278 IKEGRGCGPNKDHVMLDL-RHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNN 356 (786)
Q Consensus 278 ~~~g~g~~~~~~~v~ld~-~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~ 356 (786)
+.+|+|. + ...+|+|+ ++++++.+++++|.+.+.+.+..|+|+.++|+||.|.+||+||||+||.++++
T Consensus 333 ~~~g~g~-~-~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GGi~vd~~~~~-------- 402 (626)
T PRK07803 333 VKAGRGS-P-HGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGVEVDPDTGA-------- 402 (626)
T ss_pred HHhcCCC-C-CCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCCEEEcCCCCe--------
Confidence 9999884 2 34599999 79999999999999666665546999999999999999999999999998752
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCC-CCCCH
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNK-GSESV 435 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 435 (786)
|+|||||||||++ +|+||+|||||+||++|+|||++||++|+++++.....+....+.+....++...++... ++.++
T Consensus 403 t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (626)
T PRK07803 403 ATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAAREALAPFERPAGAENP 481 (626)
T ss_pred eecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHHHHHHHHhhhhcccCCCCH
Confidence 8999999999998 699999999999999999999999999999986532112222233333333444444322 24678
Q ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccC
Q psy9575 436 QSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKES 515 (786)
Q Consensus 436 ~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ES 515 (786)
.+++++||++||+++||+|++++|+++|.+|++|++++..+.+.+. ..+|.++.+++|++||+++|+++++|||+|+||
T Consensus 482 ~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ES 560 (626)
T PRK07803 482 YTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGH-RQYNPGWHLALDLRNMLLVSECVARAALERTES 560 (626)
T ss_pred HHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcc-cccchHHHHHHHHHhHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999999999999999988877766554 557888899999999999999999999999999
Q ss_pred CcccccCCCCCCCcccccceEEEEec-----CceeeeccCc
Q psy9575 516 RGAHAHNDFKNRDDINWLKHSIWYSN-----GNRIEFKPVN 551 (786)
Q Consensus 516 RG~h~R~D~p~~d~~~~~~~~~~~~~-----~~~~~~~~~~ 551 (786)
||+|||.|||++|+ +|++++++.+. ++++.++|++
T Consensus 561 RG~H~R~D~P~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 600 (626)
T PRK07803 561 RGGHTRDDHPGMDP-EWRRINLVCRADPVGGHVTVTRQPQP 600 (626)
T ss_pred cccEeCCCCCccCh-hhhceEEEEecCCCCCceEEEEccCC
Confidence 99999999999885 89999886553 3566666544
No 21
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2e-91 Score=783.74 Aligned_cols=534 Identities=51% Similarity=0.858 Sum_probs=498.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCC---CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMS---KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVV 77 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~---~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i 77 (786)
|+||++|+++|++|+|+||....+|+|.+++||++++..... .||++.|+.|+++.+++++|+++++.+++++++++
T Consensus 19 l~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd~i~~~~~~ap~~v 98 (562)
T COG1053 19 LRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQDAVEAFADEAPEAV 98 (562)
T ss_pred HHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHHHHHHHHHhhHHHH
Confidence 689999999999999999999999999999999999986432 36999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCC
Q psy9575 78 YELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEG 156 (786)
Q Consensus 78 ~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g 156 (786)
.||++||++|.+..+|.++++.+|+| +.+|+++..+.+|+.++..|.+++++ .+++|+.++.+++|++++++
T Consensus 99 ~~Le~~G~~f~r~~~G~~~~r~fgg~-------~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (562)
T COG1053 99 DELEKWGVPFSRTEDGRIYQRRFGGH-------SKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG 171 (562)
T ss_pred HHHHHhCCCcccCCCccccccccCCc-------CCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC
Confidence 99999999999999999999999999 88899999999999999999999999 57899999999999998645
Q ss_pred CEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCcccc
Q psy9575 157 DILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITE 236 (786)
Q Consensus 157 ~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~ 236 (786)
.|.|++.+++.+|+++.++||+||+||||++..|..+++...+||||++|++++|+.+.||||+|||||++.+.+++++|
T Consensus 172 ~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~~Q~hpt~~~~~g~l~~e 251 (562)
T COG1053 172 GVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPTGLVGSGILITE 251 (562)
T ss_pred cEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCccccccceecCCceEEee
Confidence 59999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccccCCcEEEcCCCCccccc--cCCccCCCCchhHHHHHHHHHHHhcCCC-CCCCCeEEEeCCCCChhHHHhHchhHHHH
Q psy9575 237 GVRGEGGILINSNGERFMER--YAPILKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVMLDLRHINSETIINRLPSILEI 313 (786)
Q Consensus 237 ~~~~~g~~~vn~~G~rf~~~--~~p~~~~~~~~~~~~~~i~~~~~~g~g~-~~~~~~v~ld~~~~~~~~~~~~~~~~~~~ 313 (786)
++|++||+++|.+|+|||++ |.|..+++.|+|++++++..++.+|+++ .+...++++|+++++++.+.+++|.+.+.
T Consensus 252 ~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ldl~hlg~~~~~~~l~~~~~~ 331 (562)
T COG1053 252 AVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLDLRHLGKEELEERLPGIREL 331 (562)
T ss_pred ecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCceEEEEhhhcChHHHHhcCchHHHH
Confidence 99999999999999999999 6788889999999999999999999986 35567899999999998899999999999
Q ss_pred HHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHH
Q psy9575 314 GNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRS 393 (786)
Q Consensus 314 ~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~ 393 (786)
+..+.|+|+.++|+||.|+.||+||||++|. .++. |.|||||||||++|+.+||+||||||||++++|||++
T Consensus 332 ~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~~~-------t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~ 403 (562)
T COG1053 332 AKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GRVE-------TKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRI 403 (562)
T ss_pred HHhhcCCCcccceeEecccceeccCCEeecc-cccc-------cCCCCeEECceecccccCCcccCCccccHHHHHHHHH
Confidence 9998999999999999999999999999996 4322 8899999999999888889999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHh
Q psy9575 394 AGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERR 473 (786)
Q Consensus 394 Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~ 473 (786)
||..|++|++...... +...++...+++.+++++.++.++.+++++||++|++++|++|+++.|++++++|.+|++++
T Consensus 404 Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R~~~~l~~~~~~i~~l~~~~ 481 (562)
T COG1053 404 AGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNEEGLEKALEKLKELRERL 481 (562)
T ss_pred HHHHHHHHHHhccCCC--chhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhCCceeccCHHHHHHHHHHHHHHHHHh
Confidence 9999999998765332 45556677888999998888899999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEecC-ceeeeccCc
Q psy9575 474 KYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNG-NRIEFKPVN 551 (786)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~~-~~~~~~~~~ 551 (786)
.++.+.|.+..+|.+|..++|+.|||++|++++.+||.|+||||+|||.|||++||+||+||++.+.+. ++++++||.
T Consensus 482 ~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~~w~kht~~~~~~~~~~~~~~v~ 560 (562)
T COG1053 482 KDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENWLKHTLASYDKKPRLEYEPVK 560 (562)
T ss_pred hcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchHHHHHHHHHhcCCccceeeeecc
Confidence 889999999999999999999999999999999999999999999999999999999999999887754 567777665
No 22
>PLN02815 L-aspartate oxidase
Probab=100.00 E-value=1.8e-90 Score=788.94 Aligned_cols=512 Identities=37% Similarity=0.575 Sum_probs=440.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.| +|+||||....+|+|.+++||++++.++ .|+++.|++|+++.+.+++|+++++.+++++++.++||
T Consensus 42 l~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~--~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~~L 118 (594)
T PLN02815 42 LRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDP--SDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKEL 118 (594)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCC--CCCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 58999999999 9999999999889999999999988765 89999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC-CceEEeceEEEeeeecCCC---
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEG--- 156 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g--- 156 (786)
+++|++|++..+|.+....+|+| +.+|+++..+.+|..++..|.+.+++. ||+|++++.+++|+++++|
T Consensus 119 ~~~Gv~F~~~~~g~~~~~~~gg~-------s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~ 191 (594)
T PLN02815 119 IAMGASFDHGEDGNLHLAREGGH-------SHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSI 191 (594)
T ss_pred HHhCCeeeecCCCCccccCCCCC-------ccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCcc
Confidence 99999999988888877788898 889999988889999999999999875 9999999999999986434
Q ss_pred CEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCC------
Q psy9575 157 DILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGA------ 230 (786)
Q Consensus 157 ~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~------ 230 (786)
+|+|+++++..+|+.+.|.||+|||||||++++|..++++..+||||++||+++||.+.||||+||||+.+.+.
T Consensus 192 ~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt~~~~~~~~~~~ 271 (594)
T PLN02815 192 VCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPTALADEGLPIKP 271 (594)
T ss_pred EEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeeeeecCCCccccc
Confidence 39999998877888889999999999999999999999999999999999999999999999999999987543
Q ss_pred ------CCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHH
Q psy9575 231 ------GVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETII 304 (786)
Q Consensus 231 ------~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~ 304 (786)
+++++++++++|++++|.+|+|||++|+|.. ++++||+++++|+.++.++++ .++|+|+++++.+.+.
T Consensus 272 ~~~~~~~~l~~ea~rg~G~ilvN~~GeRF~~~y~~~~-ela~rd~va~ai~~e~~~~~~-----~~v~lD~~~~~~~~~~ 345 (594)
T PLN02815 272 AKARENAFLITEAVRGDGGILYNLAGERFMPLYDERA-ELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPREEIL 345 (594)
T ss_pred cccccccceeehhhccCCcEEECCCCCCCccccCccc-ccCChHHHHHHHHHHHHhcCC-----CEEEEeCCCCCHHHHH
Confidence 3677899999999999999999999999864 999999999999999977543 2599999999988888
Q ss_pred hHchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhh
Q psy9575 305 NRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSL 384 (786)
Q Consensus 305 ~~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l 384 (786)
+++|.+.+.+.+ .|+|+.++|+||.|.+||+||||.||.+++ |+|||||||||++|+|+||+|||+||||
T Consensus 346 ~~~p~i~~~~~~-~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~---------t~IpGLyAaGE~a~~G~hGanrl~gnsl 415 (594)
T PLN02815 346 SHFPNIAAECLK-RGLDITKQPIPVVPAAHYMCGGVRTGLQGE---------TNVQGLYAAGEVACTGLHGANRLASNSL 415 (594)
T ss_pred HHCHHHHHHHHH-hCcCCCCCceeeechhcEeCCCeeECCCCc---------eecCCEEecccccccCCCCCCcchhhHH
Confidence 999999998887 699999999999999999999999999998 9999999999999779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCcccHH-HHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHH
Q psy9575 385 LDLLVFGRSAGNHILSLELKKIHNKKLPINSID-IIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGY 463 (786)
Q Consensus 385 ~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l 463 (786)
++|+|||++||++|++++............... .................+.+++.+||++||+|+||+|++++|+++|
T Consensus 416 ~e~lvfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al 495 (594)
T PLN02815 416 LEALVFARRAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNYVGIVRSTERLETAE 495 (594)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHHHHhcCCEEEcHHHHHHHH
Confidence 999999999999999876432100000000000 0000000000001112467888999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEe
Q psy9575 464 KKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYS 540 (786)
Q Consensus 464 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~ 540 (786)
++|++|++++..... .....+|.++.+++|++||+++|+++++|||+|+||||+|||+|||++||. |+++++++.
T Consensus 496 ~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~~~-~~~~~~~~~ 570 (594)
T PLN02815 496 RKLEELEAEWEAILF-RHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPELVES-ERKPTVIFP 570 (594)
T ss_pred HHHHHHHHHHHHhhc-ccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCCccChh-HhcCEEEee
Confidence 999999887654221 111123568999999999999999999999999999999999999999884 998877655
No 23
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.5e-88 Score=768.55 Aligned_cols=507 Identities=34% Similarity=0.537 Sum_probs=436.9
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++ |++|+||||....+|+|.+++||++++.++ +|+++.|++|+++.+.+++|+++++.+++++++.++||
T Consensus 22 l~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~--~ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~wL 98 (553)
T PRK07395 22 LYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAP--DDSPKLHYEDTLKAGAGLCDPEAVRFLVEQAPEAIASL 98 (553)
T ss_pred HHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccC--CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999975 999999999998888999999999988776 89999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC-CceEEeceEEEeeeecC-CCCE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA-KTNFFIEWMAIDLISDS-EGDI 158 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~-~g~v 158 (786)
+++|++|++. ++.+....+++| +.+|.++..+.+|..++..|.+.+++. ||+|++++.+++|++++ +|+|
T Consensus 99 ~~~Gv~f~~~-~~~~~~~~~~g~-------s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v 170 (553)
T PRK07395 99 VEMGVAFDRH-GQHLALTLEAAH-------SRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRC 170 (553)
T ss_pred HhcCCeeecC-CCceeeeccccc-------ccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEE
Confidence 9999999875 455555667888 889999988889999999999999765 99999999999999874 3899
Q ss_pred EEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC---CCCccc
Q psy9575 159 LGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG---AGVLIT 235 (786)
Q Consensus 159 ~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~---~~~~~~ 235 (786)
+|+++.+ +|+.+.|.||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+||||+.+.. .+++++
T Consensus 171 ~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~hpt~~~~~~~~~~l~~ 248 (553)
T PRK07395 171 QGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALTKPGAPRFLIS 248 (553)
T ss_pred EEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeEEeeeecCCCCCceeee
Confidence 9998864 67777899999999999999999989999999999999999999999999999999987753 236788
Q ss_pred cccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHH
Q psy9575 236 EGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGN 315 (786)
Q Consensus 236 ~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~ 315 (786)
++++++|+++||.+|+|||.+|+|. .|+++||+++++|++++.++.. .+....||+|+++++++.+.+++|.+.+++.
T Consensus 249 e~~rg~g~ilvn~~G~RF~~~y~~~-~El~~rd~v~~ai~~e~~~~~~-~~~~~~v~ld~~~~~~~~~~~~~p~i~~~~~ 326 (553)
T PRK07395 249 EAVRGEGAHLVDAQGRRFAFDYHPA-GELAPRDVVSRAIFSHLQKTAT-DPATAHVWLDLRPIPAERIRRRFPNIIRVCQ 326 (553)
T ss_pred hhccCCcEEEECCCCCCCccccCcc-cccccHHHHHHHHHHHHHhcCC-CCCCceEEEeccccchHHHHHhhHHHHHHHH
Confidence 8999999999999999999999997 4999999999999999977532 1223469999999999999999999999998
Q ss_pred hhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHH
Q psy9575 316 KFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAG 395 (786)
Q Consensus 316 ~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag 395 (786)
+ .|+|+.++|+||.|++||+||||+||.+++ |+|||||||||++|+|+||+||||||||++++|||++||
T Consensus 327 ~-~giD~~~~~i~v~P~~h~~~GGi~vd~~~~---------t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~ 396 (553)
T PRK07395 327 K-WGIDVFQEPIPVAPAAHYWMGGVVTDLNNQ---------TSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLA 396 (553)
T ss_pred H-cCCCcCCCEeEEecceeecCCCeeECCCCc---------ccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHH
Confidence 8 699999999999999999999999999998 999999999999978999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhcc
Q psy9575 396 NHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKY 475 (786)
Q Consensus 396 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~ 475 (786)
+.+++..... ..... .. ........ .. .....+.+++++||++||+++||+|++++|+++|.+|++|++++..
T Consensus 397 ~~~~~~~~~~--~~~~~--~~-~~~~~~~~-~~-~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~ 469 (553)
T PRK07395 397 QLELPIEPPA--SPDLP--PI-SFIIDASQ-WK-NEQEQIQRIRQELPELVWQSAGICREADTLERAIAQVEQWQQQLAA 469 (553)
T ss_pred HHHHhhcccC--CCccc--ch-hhHHHHhh-hh-ccCCCHHHHHHHHHHHHHhcccEEEcHHHHHHHHHHHHHHHHHHhh
Confidence 9988642111 11110 00 00101011 11 1224578899999999999999999999999999999999988776
Q ss_pred ccccCCC--------cc-----cchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEe
Q psy9575 476 ISFKDKS--------KI-----FNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYS 540 (786)
Q Consensus 476 ~~~~~~~--------~~-----~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~ 540 (786)
+.+.+.. .. +|.+|..++|++||+++|+++++|||+|+||||+|||.|||++|+ +|++++++++
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D~p~~~~-~~~~~~~~~~ 546 (553)
T PRK07395 470 LPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLDYPQTDP-AWQVHTLVQG 546 (553)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccCh-hhhceEEEEc
Confidence 6555411 11 234588889999999999999999999999999999999999876 8999988764
No 24
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.6e-87 Score=768.31 Aligned_cols=511 Identities=42% Similarity=0.650 Sum_probs=450.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCC-CCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFP-TRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~-~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++| +.|++|+||||... .+|++.+++||+++..+. .|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 20 l~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~--~d~~~~~~~d~~~~~~~~~d~~lv~~~~~~s~~~i~~ 96 (543)
T PRK06263 20 ARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNP--EDSFEKHFEDTMKGGAYLNDPKLVEILVKEAPKRLKD 96 (543)
T ss_pred HHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCC--CCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999 99999999999876 456788899999887765 7999999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
|+++|++|.++++|.+....+++| +.+|.++..+.+|..++..|.+.+++.||+|++++.+++|+++++++|+
T Consensus 97 L~~~Gv~f~~~~~g~~~~~~~~g~-------~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~ 169 (543)
T PRK06263 97 LEKFGALFDRTEDGEIAQRPFGGQ-------SFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVI 169 (543)
T ss_pred HHHcCCcceeCCCCceeecccCCe-------EcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEE
Confidence 999999999888888777778888 8899999888899999999999998899999999999999998634599
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCcccccccccc----CCCCccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVA----GAGVLIT 235 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~----~~~~~~~ 235 (786)
|+++++..+|+.+.|+||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+||||+++. ..+.+++
T Consensus 170 Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~p~~~~~~~~~~~~~~~ 249 (543)
T PRK06263 170 GAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGMVYPYSGRGILVT 249 (543)
T ss_pred EEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEecceeccCCCCCceEEe
Confidence 999987677888889999999999999999988899999999999999999999999999999998764 2456777
Q ss_pred cccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHH
Q psy9575 236 EGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGN 315 (786)
Q Consensus 236 ~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~ 315 (786)
+++++.|+++||.+|+||+++|+|...++.++++++++++.++.+|++. ....+|+|+++++++.++++++.+.+.+.
T Consensus 250 ~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~--~~~~~~ld~~~~~~~~l~~~~~~~~~~~~ 327 (543)
T PRK06263 250 EAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGT--NHGGVYLDVTHLPDEVIEEKLETMLEQFL 327 (543)
T ss_pred eeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCC--CCceEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998789999999999999999888873 22359999999999999999998544444
Q ss_pred hhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHH
Q psy9575 316 KFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAG 395 (786)
Q Consensus 316 ~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag 395 (786)
+ .|+|+.++|+++.|..|+|+|||+||+++| |+|||||||||++ +|+||+||+||+||++|+|||++||
T Consensus 328 ~-~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~---------t~IpGLyAaGE~~-gg~hG~~rlgG~sl~~a~v~Gr~Ag 396 (543)
T PRK06263 328 D-VGVDIRKEPMEVAPTAHHFMGGIRINEDCE---------TNIPGLFACGEVA-GGVHGANRLGGNALADTQVFGAIAG 396 (543)
T ss_pred H-hCCCCCCCCEEEeccccEecCCEEECCCCc---------ccCCCeEeccccc-cCCCCCCccchhhhhhhHHHHHHHH
Confidence 4 599999999999999999999999999998 9999999999998 6999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCcccHHHHHHHHhhhhh-CCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhc
Q psy9575 396 NHILSLELKKIHNKKLPINSIDIIIDRLSKLEN-NKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRK 474 (786)
Q Consensus 396 ~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~ 474 (786)
++|+++++... ..+.. .......+++..++. ..++.+|.+++++||++||+++|++|++++|+++|.+|++|+++++
T Consensus 397 ~~aa~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~ 474 (543)
T PRK06263 397 KSAAKNAENNE-FKKVN-RSVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEINELKEKLK 474 (543)
T ss_pred HHHHHHhhhcC-CCcch-hhhhhhHHHHHHHhhhcccCCCHHHHHHHHHHHHHhhCcEEEcHHHHHHHHHHHHHHHHHHH
Confidence 99999985432 11111 122222333433322 2346789999999999999999999999999999999999999888
Q ss_pred cccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEecC
Q psy9575 475 YISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNG 542 (786)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~~ 542 (786)
.+.+.+. |+|++++|++||+++|+++++|||+|+||||+|||.|||++|| +|++|+++++++
T Consensus 475 ~~~~~~~-----~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~-~~~~~~~~~~~~ 536 (543)
T PRK06263 475 DLKVNGI-----VDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETND-EWFGNIILNKNK 536 (543)
T ss_pred hcccccc-----hhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccCh-hhcCeEEecCCc
Confidence 8877764 8999999999999999999999999999999999999999998 899999888654
No 25
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.9e-84 Score=738.60 Aligned_cols=500 Identities=35% Similarity=0.519 Sum_probs=426.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++. ++|+||||....+|+|.+++||++++.+. +|+++.|++|+++.+.+++|+++++.+++++++.++||
T Consensus 21 l~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~--~ds~e~~~~d~~~~g~~~~d~~~v~~~~~~~~~~i~~L 97 (536)
T PRK09077 21 LSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDE--TDSIESHVEDTLIAGAGLCDEDAVRFIAENAREAVQWL 97 (536)
T ss_pred HHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCC--CccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 5799999987 89999999988888899999999888765 79999999999999999999999999999999999999
Q ss_pred HHcCCCccccCC--C--cccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC-CceEEeceEEEeeeecC-
Q psy9575 81 EHFGMPFDRNKN--G--TIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA-KTNFFIEWMAIDLISDS- 154 (786)
Q Consensus 81 ~~~Gv~~~~~~~--g--~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~- 154 (786)
+++|++|++..+ | .+....+++| +.+|+.+..+.+|..+...|.+++++. ||+|++++.+++|+.++
T Consensus 98 ~~~Gv~f~~~~~~~g~~~~~~~~~gg~-------~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~ 170 (536)
T PRK09077 98 IDQGVPFTTDEQANGEEGYHLTREGGH-------SHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDK 170 (536)
T ss_pred HHcCCccccCCCCCccccccccCCCCc-------cCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeeccc
Confidence 999999987654 3 4556677888 889999998999999999999998875 89999999999999863
Q ss_pred ----CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC-
Q psy9575 155 ----EGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG- 229 (786)
Q Consensus 155 ----~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~- 229 (786)
+++|+|+++.+..+|+...|.||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+..
T Consensus 171 ~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~ 250 (536)
T PRK09077 171 LGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQFHPTCLYHP 250 (536)
T ss_pred ccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccceeEecceecCC
Confidence 289999999887778888899999999999999999999999999999999999999999999999999998743
Q ss_pred --CCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHc
Q psy9575 230 --AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRL 307 (786)
Q Consensus 230 --~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~ 307 (786)
.+++++++++++|+++||.+|+||+++|+|.. ++++||+++++|+.++.+. +. ..+|+|+++++++.+.+++
T Consensus 251 ~~~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~~-el~~rd~v~~ai~~~~~~~-g~----~~v~ld~~~~~~~~~~~~~ 324 (536)
T PRK09077 251 QARSFLITEALRGEGAYLKLPDGTRFMPDFDERA-ELAPRDIVARAIDHEMKRL-GA----DCVYLDISHKPADFIRQHF 324 (536)
T ss_pred CCCceeecHHHcCCCCEEECCCCCCcccccCccc-ccCchhHHHHHHHHHHHhc-CC----CeEEEECCCCcHHHHHHHC
Confidence 35678888999999999999999999998864 8999999999999998752 21 2499999999988888899
Q ss_pred hhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHH
Q psy9575 308 PSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDL 387 (786)
Q Consensus 308 ~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a 387 (786)
|.+.+.+.+ .|+|+.++|+||.|.+||+||||+||.+++ |+|||||||||++|+|+||+|||||+||++|
T Consensus 325 ~~~~~~~~~-~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~---------t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~ 394 (536)
T PRK09077 325 PTIYERCLE-LGIDITKEPIPVVPAAHYTCGGVMVDLHGR---------TDLDGLYAIGEVSYTGLHGANRMASNSLLEC 394 (536)
T ss_pred hHHHHHHHH-hCcCCCCCceeeeeeeeEecCCeeECCCCc---------cccCCEEecccccccccCCCccchhhhHHHH
Confidence 999988888 699999999999999999999999999998 9999999999999789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHH
Q psy9575 388 LVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIM 467 (786)
Q Consensus 388 ~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~ 467 (786)
+|||++||++|++++........... .. ...+. .......+.+.+++||++||+++||+|++++|+++|.+|+
T Consensus 395 ~vfG~~Ag~~aa~~~~~~~~~~~~~~--~~--~~~~~---~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~ 467 (536)
T PRK09077 395 LVYGRSAAEDILSRLPKAPMPPTLPA--WD--ESRVT---DSDEEVVIQHNWHELRLFMWDYVGIVRTTKRLERALHRIR 467 (536)
T ss_pred HHHHHHHHHHHHHhhcccCcccccch--hh--hhhhh---ccccccchhHHHHHHHHHHHhCCCEEECHHHHHHHHHHHH
Confidence 99999999999987632210001110 00 00110 0111122344567999999999999999999999999999
Q ss_pred HHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEe
Q psy9575 468 ILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYS 540 (786)
Q Consensus 468 ~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~ 540 (786)
+|++++........ .....+|++||+++|+++++|||+|+||||+|||.|||++||+ |.++++...
T Consensus 468 ~l~~~~~~~~~~~~------~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~-~~~~~~~~~ 533 (536)
T PRK09077 468 LLQQEIDEYYANFR------VSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPE-AGPTILSPP 533 (536)
T ss_pred HHHHHHHHHhhhcc------cCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCcccccc-cCceEeecC
Confidence 99876543221100 0124579999999999999999999999999999999999885 877766543
No 26
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=6.5e-84 Score=735.61 Aligned_cols=488 Identities=34% Similarity=0.523 Sum_probs=429.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.|++|+||||....+|+|.+++||++++... +|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 29 l~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~--~ds~e~~~~d~~~~g~g~~d~~~v~~~~~~s~~~i~~L 106 (541)
T PRK07804 29 LTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDP--GDSPEAHVADTLVAGAGLCDPDAVRSLVAEGPRAVREL 106 (541)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCC--CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998888999999999988765 89999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEe-cCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV-ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~-~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
+++|++|++..+|.+....+++| +.+|+.+. .+.+|..++..|.+++++.||++++++.+++|+++++|+|+
T Consensus 107 ~~~Gv~f~~~~~G~~~~~~~~g~-------~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~ 179 (541)
T PRK07804 107 VALGARFDESPDGRWALTREGGH-------SRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVA 179 (541)
T ss_pred HHcCCccccCCCCcEeeeccCCe-------ecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEE
Confidence 99999999988898877778888 78888887 47789999999999999999999999999999987547999
Q ss_pred EEEEEEcC---CCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC------C
Q psy9575 160 GVVALEME---TGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG------A 230 (786)
Q Consensus 160 G~~~~~~~---~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~------~ 230 (786)
|+.+.+.. ++....|.||+|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+.. .
T Consensus 180 Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~q~~pt~~~~~~~~~~~ 259 (541)
T PRK07804 180 GVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHPTVLFLGPAAGGQ 259 (541)
T ss_pred EEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcceeEecceecCCcccccc
Confidence 99887431 22346799999999999999999999999999999999999999999999999999987652 2
Q ss_pred CCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhH
Q psy9575 231 GVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSI 310 (786)
Q Consensus 231 ~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~ 310 (786)
.++++++++++|++++|.+|+|||++|+|.. |+++||+++++|+.++.++ + ..++|+|.++ .+.+..++|++
T Consensus 260 ~~l~~~~~r~~g~~lvn~~G~RF~~~~~~~~-E~a~rd~v~~ai~~~~~~~-g----~~~v~lD~~~--~~~~~~~~p~i 331 (541)
T PRK07804 260 RPLISEAVRGEGAILVDAQGNRFMAGVHPLA-DLAPRDVVAKAIDRRMKAT-G----DDHVYLDARG--IEGFARRFPTI 331 (541)
T ss_pred cceechhhcCCceEEECCCCCCCccccCccc-ccCcHHHHHHHHHHHHHhc-C----CCEEEEeCcc--HHHHHHHhhHH
Confidence 3567888999999999999999999999974 9999999999999998653 2 1259999885 46778899999
Q ss_pred HHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHH
Q psy9575 311 LEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVF 390 (786)
Q Consensus 311 ~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~ 390 (786)
.+++.+ .|+|+.++++||.|.+||+||||.||.+++ |+|||||||||++|+|+||+||++|+++.++++|
T Consensus 332 ~~~~~~-~gid~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~ 401 (541)
T PRK07804 332 TASCRA-AGIDPVRQPIPVAPAAHYSCGGVVTDVYGR---------TSVPGLYAAGEVACTGVHGANRLASNSLLEGLVV 401 (541)
T ss_pred HHHHHH-hCcCCcCCeEEEEHHHhhcCCCEEECCCCc---------ccCCCeEEcccccccccCCCcccHHHHHHHHHHH
Confidence 999988 699999999999999999999999999998 9999999999999789999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH
Q psy9575 391 GRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILD 470 (786)
Q Consensus 391 G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~ 470 (786)
|++||++|++++.... . . .... . .....+.++.+++++||++||+++||+|++++|+++|.+|+++.
T Consensus 402 G~~ag~~aa~~~~~~~-~---~-~~~~---~-----~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~~~ 468 (541)
T PRK07804 402 GERAGAAAAAHAAAAG-R---P-RATP---A-----VGPEPGLLPALDRAELQRAMTRGAGVLRSAAGLARAADRLAAGA 468 (541)
T ss_pred HHHHHHHHHHhhcccC-c---c-ccch---h-----hcccccCchHHHHHHHHHHHHhcCCeEEcHHHHHHHHHHHHHHH
Confidence 9999999998864321 1 1 1110 0 01233566889999999999999999999999999999998864
Q ss_pred HHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec
Q psy9575 471 ERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN 541 (786)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~ 541 (786)
... ++++.+.+|++||+++|+++++|||+|+||||+|||+|||++|| +|++++++.++
T Consensus 469 ~~~------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~-~~~~~~~~~~~ 526 (541)
T PRK07804 469 PAR------------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDD-EWARSIVVRLA 526 (541)
T ss_pred hhc------------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccCh-hhhceEEEEEc
Confidence 321 13466788999999999999999999999999999999999998 89999987754
No 27
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.1e-83 Score=726.77 Aligned_cols=471 Identities=34% Similarity=0.493 Sum_probs=414.9
Q ss_pred ChHhhhcHhCCCCEEEEEecCC-CCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFP-TRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~-~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++|+ |.+|+||||... .+|+|.+++||+++..+. +|+++.|++|+++.+.+++|+++++.+++++++.++|
T Consensus 22 l~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~--~ds~e~~~~d~~~~~~g~~d~~~v~~~~~~s~~~i~w 97 (513)
T PRK07512 22 LMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGP--DDSPALHAADTLAAGAGLCDPAVAALITAEAPAAIED 97 (513)
T ss_pred HHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCC--CCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899997 569999999987 566788999999987765 8999999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEe-cCCcHHHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCC
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV-ADRTGHALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGD 157 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~-~~~~g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~ 157 (786)
|+++|++|++..+|.+....+++| +.+|+++. .+.+|..++..|.+.+++. ||+|++++.+++|+.++ |+
T Consensus 98 L~~~Gv~f~~~~~G~~~~~~~~~~-------~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~ 169 (513)
T PRK07512 98 LLRLGVPFDRDADGRLALGLEAAH-------SRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GA 169 (513)
T ss_pred HHHhCCccccCCCCccccccccCc-------cCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CE
Confidence 999999999888888777777888 88999887 5778999999999999875 99999999999999885 99
Q ss_pred EEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC---CCCcc
Q psy9575 158 ILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG---AGVLI 234 (786)
Q Consensus 158 v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~---~~~~~ 234 (786)
|+|+.+.+ +++.+.|.||+|||||||++++|..+++++.+||||+.||+++||.+.+|||+||||+.+.. .++++
T Consensus 170 v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~~~~~~~~~l~ 247 (513)
T PRK07512 170 VAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAIDIGRDPAPLA 247 (513)
T ss_pred EEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeeecCCCCCccee
Confidence 99998875 34456799999999999999999999999999999999999999999999999999987743 35677
Q ss_pred ccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHH
Q psy9575 235 TEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIG 314 (786)
Q Consensus 235 ~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~ 314 (786)
+++++++|++++|.+|+||+++|+|.. ++++|++++++++.++.+|++ +|+|+++++.+.+.+++|++.+++
T Consensus 248 ~~~~rg~g~~lvn~~G~RF~~~~~~~~-e~~~rd~v~~ai~~~~~~g~~-------v~ld~~~~~~~~~~~~~~~i~~l~ 319 (513)
T PRK07512 248 TEALRGEGAILINEDGERFMADIHPGA-ELAPRDVVARAVFAEIAAGRG-------AFLDARAALGAHFATRFPTVYAAC 319 (513)
T ss_pred ehhhhCCceEEECCCCCChhhhcCCcc-ccCcHHHHHHHHHHHHhcCCE-------EEEeccccchHHHHHHhhHHHHHH
Confidence 888999999999999999999999975 999999999999999988754 899999988788888999999999
Q ss_pred HhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHH
Q psy9575 315 NKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSA 394 (786)
Q Consensus 315 ~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~A 394 (786)
.+ .|+|+.++++||.|.+||++|||+||.+++ |+|||||||||++++|+||+||++|+||++|+|||++|
T Consensus 320 ~~-~gid~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~a 389 (513)
T PRK07512 320 RS-AGIDPARQPIPVAPAAHYHMGGIAVDADGR---------SSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARA 389 (513)
T ss_pred HH-hCcCCCCCceEEecccCEEcCCEEECCCCc---------cccCCEEecccccccCCCcccchHHHHHHHHHHHHHHH
Confidence 88 799999999999999999999999999998 99999999999997899999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhc
Q psy9575 395 GNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRK 474 (786)
Q Consensus 395 g~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~ 474 (786)
|++|++++..... +..... .. ..+.+..++||++||+++|++|++++|+++|.+|++|+++.
T Consensus 390 g~~aa~~~~~~~~--~~~~~~-------------~~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~- 451 (513)
T PRK07512 390 AEDIAGTPAAAAA--PLSAAA-------------AP--ALDPADLALLRPIMSRHVGVLRDADGLRRAIAALLPLEAGA- 451 (513)
T ss_pred HHHHHHHhhcccc--cccccc-------------cc--cccHHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHHHH-
Confidence 9999988644211 000000 00 12334557799999999999999999999999999997542
Q ss_pred cccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEe
Q psy9575 475 YISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYS 540 (786)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~ 540 (786)
.+++||+++|+++++|||+|+||||+|||+|||++||+ |.++++...
T Consensus 452 ------------------~~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~-~~~~~~~~~ 498 (513)
T PRK07512 452 ------------------GPAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA-ARRTRLTLA 498 (513)
T ss_pred ------------------HHHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh-hcceEEEeh
Confidence 13579999999999999999999999999999999886 766665433
No 28
>KOG2403|consensus
Probab=100.00 E-value=3.5e-85 Score=685.46 Aligned_cols=566 Identities=54% Similarity=0.865 Sum_probs=517.7
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|.+|+.+++.|.+|+++.|..+.++.+..++||+++.+.++.+|+|++|+.|+++.+++++|++.+..+..+++..+..|
T Consensus 68 lr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i~ym~~ea~~a~~el 147 (642)
T KOG2403|consen 68 LRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVIEL 147 (642)
T ss_pred hhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhhhHHHhhcchhHHHH
Confidence 56899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCC-CCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGE-KPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~-~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
+.+|.+|.+.++|+++++.|||++-.|+. -...|+++..+.+|+.+...|..+..+....++-+..+++|+.+. +.+.
T Consensus 148 ~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~~~~~f~~yfa~dll~~~-g~~~ 226 (642)
T KOG2403|consen 148 ENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRHNTSFFVEYFALDLLMSQ-GECV 226 (642)
T ss_pred HhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhccchhhHHHHHHHHHHHhc-cCce
Confidence 99999999999999999999999654443 246788889999999999999999988888888888889999987 8899
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~ 239 (786)
|++.++..++....++++++|+||||+++.|...+.+...||||.+|+.++|+.+.+|||+||||+++++.|.+++++.+
T Consensus 227 ~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvqfhpt~i~g~Gcliteg~r 306 (642)
T KOG2403|consen 227 GVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQFHPTGIYGAGCLITEGVR 306 (642)
T ss_pred EEEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceeeeeeecccccceeeeeccc
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhcC
Q psy9575 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFAN 319 (786)
Q Consensus 240 ~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~g 319 (786)
++||+++|..|+|||+.|.|...++++||++++++..++.+|+|++|..+++|+++.+++++.++.++|.+-+...-+.|
T Consensus 307 geGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~h~p~e~~~~~~p~is~ta~i~ag 386 (642)
T KOG2403|consen 307 GEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLSHLPPEPLKERLPGISETAAIFAG 386 (642)
T ss_pred ccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCCccchhhccCChhhhcccCCCcchhhhhHhh
Confidence 99999999999999999999988999999999999999999999989899999999999999999999998887666689
Q ss_pred CCCCCCCeeeeecccccccCcccCCCCcccccCC-CCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 320 VNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNN-DNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 320 ~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~-~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
+|..++|+||.|.+||.||||.++.+++|+..+. ...+.|||||||||++|.++||+||||.|||++.+|||+.+|.++
T Consensus 387 vdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~~i 466 (642)
T KOG2403|consen 387 VDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI 466 (642)
T ss_pred cCccccccccCCCcccccCccccCCccceeeeccccccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764221 345899999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccc
Q psy9575 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478 (786)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~ 478 (786)
+..++.....+++.++.-++..+.+..++..++.++-.++|..+|+.||++++++|....|+++..+|.+|..+++.++.
T Consensus 467 a~~~~pg~~~~~~~~~~g~~sv~~ld~lr~~~gsi~TselRl~MQksMqnhaaVFR~g~~LqEG~~kIskl~~~~k~lkt 546 (642)
T KOG2403|consen 467 AEELRPGDKVPPLASNAGEESVANLDKLRFADGSIRTSELRLEMQKTMQKHAAVFRVGSVLQEGCRKISKLYGDFKDLKT 546 (642)
T ss_pred HHhcCCCCCCCCCCCCcccchHHHHHhhhcccCCccHHHHHHHHHHHHhhcceEEEechHHHHHHHHHHHHHhHHhhhcc
Confidence 99887665455555544444555667777778889999999999999999999999999999999999999999999999
Q ss_pred cCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEec----CceeeeccCcCCC
Q psy9575 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSN----GNRIEFKPVNLKP 554 (786)
Q Consensus 479 ~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~ 554 (786)
.|....||++|.+.+|++|++++|...+.+|++||||||+|+|+|||.++|++|.||++.+-+ +-.++++||.=++
T Consensus 547 fDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~R~DehWrKHTlsy~~~~tg~Vtl~YRpVidkT 626 (642)
T KOG2403|consen 547 FDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPVRIDEHWRKHTLSYWDVGTGKVTLEYRPVIDKT 626 (642)
T ss_pred ccccceechhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhcccccchhhhhccceeeeecCCCceEEEEEeeccccc
Confidence 999889999999999999999999999999999999999999999999999999999887442 2478889987555
Q ss_pred C---cccccCCCCcCC
Q psy9575 555 L---TVKTVHPKKHHD 567 (786)
Q Consensus 555 ~---~v~~~~p~~r~~ 567 (786)
| ++..+||..|.|
T Consensus 627 Lde~~~~tvPPaiRsY 642 (642)
T KOG2403|consen 627 LDEAECDTVPPAIRSY 642 (642)
T ss_pred CchhhcCcCCCccCCC
Confidence 5 567788887765
No 29
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=6.3e-83 Score=722.37 Aligned_cols=484 Identities=36% Similarity=0.565 Sum_probs=418.6
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++ |++|+||||....+|+|.+++||+++..++ +|+++.|++|+++.+.+++|+++++.+++++++.++||
T Consensus 16 l~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~--~ds~e~~~~d~~~~g~~~~d~~~v~~~~~~s~~~i~~L 92 (510)
T PRK08071 16 LTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVAT--YDSPNDHFEDTLVAGCHHNNERAVRYLVEEGPKEIQEL 92 (510)
T ss_pred HHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccC--CCCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHHHHH
Confidence 579999987 899999999999889999999999988766 89999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEe-cCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV-ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~-~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
++||++|+++.+|.+....+++| +.+|++|. ++.+|..+++.|.+.++ .||+|++++.+++|++++ ++|+
T Consensus 93 ~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~ 163 (510)
T PRK08071 93 IENGMPFDGDETGPLHLGKEGAH-------RKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCI 163 (510)
T ss_pred HHcCCccccCCCCceeeccCcCc-------cCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEE
Confidence 99999999888888776777888 88898887 47889999999999886 699999999999999885 9999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCC---cccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV---LITE 236 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~---~~~~ 236 (786)
|+.+.+ .+|+.+.++||+|||||||++++|..+++++.+||||+.||+++|+.+.||||+||||+.+...+. ++++
T Consensus 164 Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~pt~~~~~~~~~~li~e 242 (510)
T PRK08071 164 GVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANGRCVGLVSE 242 (510)
T ss_pred EEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEeeeEecCCCccceeech
Confidence 999887 577777899999999999999999999999999999999999999999999999999987765443 6788
Q ss_pred ccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHh
Q psy9575 237 GVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNK 316 (786)
Q Consensus 237 ~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~ 316 (786)
+++++|++++|.+|+||+++|+|.. ++++||+++++++.++.+|+ .+|+|+++++ .+..++|++.+++.+
T Consensus 243 ~~rg~g~~lvn~~G~RF~~~~~~~~-e~~~rd~v~~ai~~~~~~~~-------~v~ld~~~~~--~~~~~~~~i~~~~~~ 312 (510)
T PRK08071 243 AVRGEGAVLINEDGRRFMMGIHPLA-DLAPRDVVARAIHEELLSGE-------KVYLNISSIQ--NFEERFPTISALCEK 312 (510)
T ss_pred hhcCCceEEECCCCCCCccccCccc-cCCCHHHHHHHHHHHHHcCC-------eEEEeccchH--HHHHHhhHHHHHHHH
Confidence 8899999999999999999999875 89999999999999988764 3999999875 467789999999988
Q ss_pred hcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHH
Q psy9575 317 FANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGN 396 (786)
Q Consensus 317 ~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~ 396 (786)
.|+|+.++++||.|.+||+||||+||.+++ |+|||||||||++|+|+||+||++|+||++|+|||++||+
T Consensus 313 -~gid~~~~~i~v~p~~h~~~GGi~vd~~~~---------t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~ 382 (510)
T PRK08071 313 -NGVDIETKRIPVVPGAHFLMGGVKTNLDGE---------TSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAE 382 (510)
T ss_pred -hCcCCCCCceeEehhheEEcCCEEECCCCc---------ccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999998 9999999999999779999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccc
Q psy9575 397 HILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYI 476 (786)
Q Consensus 397 ~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~ 476 (786)
+|+.+..... +.......... ...++...+++||++||+++||+|++++|++++.+|++|+.+...+
T Consensus 383 ~aa~~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~ 449 (510)
T PRK08071 383 HILTKATKPR-----LNPFAEKEKKF--------IVLNHLPTKEEIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMIL 449 (510)
T ss_pred HHHhhccCCc-----ccchhhhhhhh--------ccccchHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhc
Confidence 9987753211 10110000000 0011223357999999999999999999999999999996322111
Q ss_pred cccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceEEEEe
Q psy9575 477 SFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYS 540 (786)
Q Consensus 477 ~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~~~~~ 540 (786)
... .....++|++||+++|+++++|||+|+||||+|||+|||++ +|+++++++.
T Consensus 450 ~~~-------~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~---~~~~~~~~~~ 503 (510)
T PRK08071 450 DHD-------ALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR---NWRGKEIVRT 503 (510)
T ss_pred ccc-------ccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc---ccCceEEEec
Confidence 111 01135689999999999999999999999999999999997 8998886654
No 30
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=100.00 E-value=2.2e-80 Score=701.09 Aligned_cols=470 Identities=38% Similarity=0.588 Sum_probs=413.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|++.|. |+||||....+|+|.+++||+++..+. .|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 15 l~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~--~ds~e~~~~d~~~~~~~~~d~~~v~~~~~~~~~~i~~L 91 (488)
T TIGR00551 15 LSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAE--TDSIDSHVEDTLAAGAGICDREAVEFVVSDARSAVQWL 91 (488)
T ss_pred HHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecC--CCCHHHHHHHHHHhcCCcCCHHHHHHHHHhHHHHHHHH
Confidence 589999999997 999999988888999999999988776 79999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
+++|++|++..+|.+....+++| +.+|+.+..+.+|..++..|.+.+++ .||+|++++.+++|+.++ ++|+
T Consensus 92 ~~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~ 163 (488)
T TIGR00551 92 VDQGVLFDRHEQGSYALTREGGH-------SYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET-GRVV 163 (488)
T ss_pred HHcCCcceeCCCCCccccCCCCc-------CCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEE
Confidence 99999999888888877778888 88999998888999999999999988 699999999999999885 8999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccCC---CCcccc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGA---GVLITE 236 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~---~~~~~~ 236 (786)
|+.+.+. ++...|+|++|||||||++++|..++++..+||||+.||+++||.+.||||+||||+.+... ++++++
T Consensus 164 Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~pt~~~~~~~~~~l~~~ 241 (488)
T TIGR00551 164 GVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTALYKPRARYFLITE 241 (488)
T ss_pred EEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEeeEecCCCCcceeeeh
Confidence 9988762 45567999999999999999999999999999999999999999999999999999876543 357788
Q ss_pred ccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHh
Q psy9575 237 GVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNK 316 (786)
Q Consensus 237 ~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~ 316 (786)
+++++|++++|.+|+||+++|+|.. ++++||+++++++.++.++.+ .++|+|.++++. +.+++|++.+++.+
T Consensus 242 ~~~g~g~~lvn~~G~RF~~~~~~~~-el~~rd~v~~ai~~~~~~~~~-----~~v~ld~~~~~~--~~~~~~~~~~~~~~ 313 (488)
T TIGR00551 242 AVRGEGAYLVDRDGTRFMADFHPRG-ELAPRDIVARAIDHEMKRGGA-----DCVFLDASGIEA--FRQRFPTIYAKCLG 313 (488)
T ss_pred hhcCCceEEECCCCCChhhccCccc-ccCchHHHHHHHHHHHHhcCC-----CeEEecCcchHH--HHHHcchHHHHHHH
Confidence 8899999999999999999999975 999999999999999988643 259999998753 78889999999888
Q ss_pred hcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHH
Q psy9575 317 FANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGN 396 (786)
Q Consensus 317 ~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~ 396 (786)
.|+|+.++|++|.|.+||+||||+||.++| |+|||||||||++|+|+||+||++|+||++|+|||++||+
T Consensus 314 -~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~ 383 (488)
T TIGR00551 314 -AGIDPTREPIPVVPAAHYTCGGISVDDHGR---------TTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAE 383 (488)
T ss_pred -hCCCCCCCceecccccEEecCCEEECCCCc---------ccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999 9999999999999789999999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccc
Q psy9575 397 HILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYI 476 (786)
Q Consensus 397 ~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~ 476 (786)
+|+++..... .... .. ..... ..........+.+++.+||++||+++||+|++++|+++|.+|++|++++.
T Consensus 384 ~aa~~~~~~~----~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~m~~~~gi~r~~~~l~~al~~~~~l~~~~~-- 454 (488)
T TIGR00551 384 DISRRPPYAS----DIST-SP-PWDEP-RSENPDDRVVLQHNMSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEID-- 454 (488)
T ss_pred HHHhhccccC----ccch-hh-hhhhh-hhcccccccchHHHHHHHHHHHhheeeEEEcHHHHHHHHHHHHHHHHHHH--
Confidence 9998753211 0100 00 00110 00111122347788889999999999999999999999999999987653
Q ss_pred cccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCC
Q psy9575 477 SFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFK 525 (786)
Q Consensus 477 ~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p 525 (786)
..+++||+++|+++++|||+|+||||+|||+|||
T Consensus 455 ---------------~~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 455 ---------------EYELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 1246999999999999999999999999999998
No 31
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=100.00 E-value=7.7e-79 Score=692.64 Aligned_cols=500 Identities=24% Similarity=0.328 Sum_probs=395.5
Q ss_pred ChHhhhcH----hCCCCEEEEEecCCCCChhhhccc--CeeeccCC-CCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy9575 1 MRASLQLA----QEGLNVAILSKVFPTRSHTVAAQG--GISASLGN-MSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73 (786)
Q Consensus 1 L~AA~~aa----~~G~~V~vvek~~~~~g~s~~a~G--gi~a~~~~-~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~ 73 (786)
|+||++|+ ++|++|+||||....++++ +++| |+++.... .+.|+++.|++++++.+.+++|+++++.+++++
T Consensus 12 L~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~~lV~~lv~~s 90 (614)
T TIGR02061 12 CGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVREDLIFDMARHV 90 (614)
T ss_pred HHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 58999998 7899999999998866655 6777 45544432 136899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCccccC-CCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeee
Q psy9575 74 PKVVYELEHFGMPFDRNK-NGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLIS 152 (786)
Q Consensus 74 ~~~i~~l~~~Gv~~~~~~-~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~ 152 (786)
+++++||++||++|++.. +|.+. ..+.. .. ...|+.+.+.+...+++.++++++++.+++|++
T Consensus 91 ~~~i~~L~~~Gv~F~~~~~~G~~~--~~g~~-----------~~---~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~ 154 (614)
T TIGR02061 91 DDSVHLFEEWGLPLWIKPEDGKYV--REGRW-----------QI---MIHGESYKPIVAEAAKNALGDIFERIFIVKLLL 154 (614)
T ss_pred HHHHHHHHHcCCCceecCCCCccc--cCCCc-----------cc---CcCchhHHHHHHHHHHhCCCeEEcccEEEEEEe
Confidence 999999999999998763 55432 11111 00 113556777777777777899999999999998
Q ss_pred cCC--CCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCc---------ccCCCchHHHHHHHHCCCCccCCCccc
Q psy9575 153 DSE--GDILGVVALEMETGNIMILESKITILATGGGGRIWAAST---------NAFINTGDGLGMAARAGLPLEDMEFWQ 221 (786)
Q Consensus 153 ~~~--g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~---------~~~~~tGdg~~~a~~aGa~l~~~e~~q 221 (786)
+++ |+|+||++++..+|+.+.|.||+|||||||++++|.+++ +++.+||||+.||+++||.+.+||| |
T Consensus 155 d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~l~dme~-q 233 (614)
T TIGR02061 155 DKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAEMTQMEN-R 233 (614)
T ss_pred cCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCCccCCcc-c
Confidence 643 799999998877888888999999999999999997643 3688999999999999999999999 9
Q ss_pred cccccccC----CC--CccccccccCCcEEEcCCCCccccccCCccCCCC----------chhHHHHHHHHHHHhcCCCC
Q psy9575 222 FHPTGVAG----AG--VLITEGVRGEGGILINSNGERFMERYAPILKDLA----------PRDFVSRAMDQEIKEGRGCG 285 (786)
Q Consensus 222 ~~p~~~~~----~~--~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~----------~~~~~~~~i~~~~~~g~g~~ 285 (786)
|||+.+.. .+ +++++ ++++|.+|+|||.+|+|...++. |||+++++|+.++++|++
T Consensus 234 f~pt~~~~~~~~~~~~~l~~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~varai~~e~~~g~g-- 305 (614)
T TIGR02061 234 FVPARFKDGYGPVGAWFLLFK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRNHMMLREMREGRG-- 305 (614)
T ss_pred eecceeccccCCCCceEEEee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHHHHHHHHHHcCCC--
Confidence 99998742 12 45555 79999999999988877654443 478999999999999877
Q ss_pred CCCCeEEEeCCCC---------------ChhHHHhHchhHHHHHHhh--cCCCCCCCCeeeeeccccccc------Cccc
Q psy9575 286 PNKDHVMLDLRHI---------------NSETIINRLPSILEIGNKF--ANVNALKEPIPVIPTIHYQMG------GIPT 342 (786)
Q Consensus 286 ~~~~~v~ld~~~~---------------~~~~~~~~~~~~~~~~~~~--~g~d~~~~~i~v~p~~~~t~G------Gi~v 342 (786)
+ ||||++++ +.+.+...++.....+..+ .|+|+.++||||.|++||+|| ||+|
T Consensus 306 ~----vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy~mGg~~~~~Gi~v 381 (614)
T TIGR02061 306 P----IYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYLMGSHSGCCGIWV 381 (614)
T ss_pred C----EEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCeecCCcccccceee
Confidence 3 99998854 4455556666444434332 499999999999999999999 9999
Q ss_pred C-----------------CCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 343 N-----------------IYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 343 d-----------------~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
| .+++ |+|||||||||++|+++|+ ++||||++ |++||++|++++...
T Consensus 382 d~~~~~~~~~~~~~~~~~~~~~---------T~i~gLyA~Ge~~~~~~h~---l~~nsl~e----g~~ag~~a~~~~~~~ 445 (614)
T TIGR02061 382 SGPEDWVPEEYKVRAAKVYNRM---------TTVEGLFTCGDGVGASPHK---FSSGSFTE----GRIAAKAAVRWILDH 445 (614)
T ss_pred cccccccccccccccccccCCc---------cccCCEEeceecccCcchh---hHHhHHHH----HHHHHHHHHHHHHhC
Confidence 8 4444 9999999999999888984 88999988 777777778777543
Q ss_pred cCCCCCCcccHHHHHHHHhhhhh------C---C-----CCCCHHHHHHHHHHHHHhccccc-----cCHHHHHHHHHHH
Q psy9575 406 IHNKKLPINSIDIIIDRLSKLEN------N---K-----GSESVQSVANDIRKTMQNYCGVF-----RTDKLMKNGYKKI 466 (786)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~------~---~-----~~~~~~~~~~~l~~~m~~~~g~~-----r~~~~l~~~l~~l 466 (786)
....+...++++....++..++. . . ...++.+++++||++||+|+||+ |++++|++||.+|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~~al~~l 525 (614)
T TIGR02061 446 KDFKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTGLKLM 525 (614)
T ss_pred CCCCCCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHHHHHHHH
Confidence 21122222223333322222210 0 1 11347788899999999999999 9999999999999
Q ss_pred HHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCC--cccccCCCCCCCcccccceEEEEec---
Q psy9575 467 MILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESR--GAHAHNDFKNRDDINWLKHSIWYSN--- 541 (786)
Q Consensus 467 ~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESR--G~h~R~D~p~~d~~~~~~~~~~~~~--- 541 (786)
++|+++++++.+.+. ++|++++|++|||++|+++++|||+|+||| |+|||+|||++||++|++|++++.+
T Consensus 526 ~~l~~~~~~~~~~~~-----~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~~w~~~~~~~~~~~~ 600 (614)
T TIGR02061 526 AMLEEDLEKLAARDL-----HELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDENWKCFVNSKYDPAT 600 (614)
T ss_pred HHHHHHHhcccCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCchhhhceEEEEEcCCC
Confidence 999988877666554 899999999999999999999999999999 9999999999999999999887652
Q ss_pred -CceeeeccCc
Q psy9575 542 -GNRIEFKPVN 551 (786)
Q Consensus 542 -~~~~~~~~~~ 551 (786)
+++++++|+.
T Consensus 601 g~~~~~~~~~~ 611 (614)
T TIGR02061 601 GETTIEKKPYY 611 (614)
T ss_pred CceEEEeeccc
Confidence 3457776665
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-78 Score=723.02 Aligned_cols=518 Identities=22% Similarity=0.303 Sum_probs=413.9
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCC-hhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRS-HTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g-~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||++|++.|++|+||||.....+ ++..++||+++.... ++|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 26 l~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~-~~ds~e~~~~Dt~~~g~gl~d~~~v~~~~~~a~~~i~~ 104 (897)
T PRK13800 26 TMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIP-GKAEPEDYVAEITRANDGIVNQRTVYQTATRGFAMVQR 104 (897)
T ss_pred HHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCC-CccCHHHHHHHHHhhcCCCCCHHHHHHHHHhHHHHHHH
Confidence 5899999999999999999987433 344455566433221 26899999999999999999999999999999999999
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC----CceEEeceEEEeeeecCC
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA----KTNFFIEWMAIDLISDSE 155 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~----Gv~i~~~~~v~~L~~~~~ 155 (786)
|++||++|++..+|.+.++.+... ......+.+|..++..|.+.+++. +|++++++.+++|++++
T Consensus 105 L~~~Gv~f~~~~~G~~~~~~~~~~----------~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~- 173 (897)
T PRK13800 105 LERYGVKFEKDEHGEYAVRRVHRS----------GSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG- 173 (897)
T ss_pred HHHcCCceeeCCCCCEeeeeeccC----------CCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-
Confidence 999999999888877654332110 001113558898988888887654 78999999999999985
Q ss_pred CCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc------Ccc-CcccCCCchHHHHHHHHCCCCccCCCcccccccccc
Q psy9575 156 GDILGVVALEMETGNIMILESKITILATGGGGRI------WAA-STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVA 228 (786)
Q Consensus 156 g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~------~~~-~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~ 228 (786)
|+|+|+++++..+|+++.|.||+|||||||++++ |.+ +++++.+||||++||+++||.+.||||+||||+...
T Consensus 174 g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~~~tGDG~amA~raGA~l~~me~vqfhPt~~~ 253 (897)
T PRK13800 174 GRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSGIECFQINPLIKD 253 (897)
T ss_pred CEEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCCCcccHHHHHHHHcCCcccCceeEEeeccccC
Confidence 9999999998888999999999999999999988 322 232458999999999999999999999999998776
Q ss_pred CCCCccccccccCCcEEEcCCCCccccc-cCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHc
Q psy9575 229 GAGVLITEGVRGEGGILINSNGERFMER-YAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRL 307 (786)
Q Consensus 229 ~~~~~~~~~~~~~g~~~vn~~G~rf~~~-~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~ 307 (786)
..+.+.++.++++|++++|.+|+|||++ |.+ + .+..++..++.+|+| .||||++|++++.++ +|
T Consensus 254 ~~g~~~~~~~~~~G~~lvN~~GeRFm~~~~~~-------~-~i~~~i~~ei~~g~g------~vyLD~~~l~~e~~~-~l 318 (897)
T PRK13800 254 YNGPACAYVANPFGGYQVNAQGERFVDSDYWS-------G-QMMAEVKREIESARG------PIYLKVSHLPEETLS-AL 318 (897)
T ss_pred CCCchhheeecccCcEEECCCCCccccCcccc-------h-hHHHHHHHHHhcCCC------CEEEECCCCCHHHHH-HH
Confidence 5565566677889999999999999974 322 1 234466678877766 399999999988776 67
Q ss_pred hhHHHHHH--------hhcCCCCCCCCeeee-----ecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCC
Q psy9575 308 PSILEIGN--------KFANVNALKEPIPVI-----PTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVH 374 (786)
Q Consensus 308 ~~~~~~~~--------~~~g~d~~~~~i~v~-----p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~ 374 (786)
|.+.+.+. ...|+||.++++++. |..||+||||+||.+++ |+|||||||||++|+
T Consensus 319 ~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~---------T~v~GLfAaGE~a~~--- 386 (897)
T PRK13800 319 ESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR---------TTVPGLYAAGDLACV--- 386 (897)
T ss_pred HHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCc---------ccCCCeEechhccCc---
Confidence 77665431 125999999999974 45577899999999998 999999999999853
Q ss_pred CCCccChhhhHHHHHHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhcccccc
Q psy9575 375 GANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFR 454 (786)
Q Consensus 375 Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r 454 (786)
++|++.+|+|||++||++|++|+.+.........+.++...+.+..++....+..+.+++++||++||+|+||+|
T Consensus 387 -----~~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R 461 (897)
T PRK13800 387 -----PHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPDGPPQPQVEYKLRRFVNDYVAPPK 461 (897)
T ss_pred -----chhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhchhhccCCCChHHHHHHHHHHHHcccCccc
Confidence 258999999999999999999985432111222223333333433333333345567899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcc--cccCCCCCCCcccc
Q psy9575 455 TDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGA--HAHNDFKNRDDINW 532 (786)
Q Consensus 455 ~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~--h~R~D~p~~d~~~~ 532 (786)
++++|+++|++|++|+++++.+.+.+ |++|++++|++||+++|+++++|||+|+||||+ |||+|||++||++|
T Consensus 462 ~~~~L~~al~~l~~l~~~~~~~~~~~-----~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESRG~~~H~R~DyP~~~d~~w 536 (897)
T PRK13800 462 TAAKLSIAVETFERMAAEIAGMGART-----PHELMRCAEVSFIRDCAEMAARSSLTRTESRWGLYHDRADLPERDDASW 536 (897)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCCCChHhh
Confidence 99999999999999998887766554 599999999999999999999999999999999 99999999999999
Q ss_pred cceEEEEec---CceeeeccCcCCCCc---ccccCCCCcCC
Q psy9575 533 LKHSIWYSN---GNRIEFKPVNLKPLT---VKTVHPKKHHD 567 (786)
Q Consensus 533 ~~~~~~~~~---~~~~~~~~~~~~~~~---v~~~~p~~r~~ 567 (786)
++|+++++. ++++.++|++..+++ +.+|+|..|.|
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 577 (897)
T PRK13800 537 GYHLNLRKGDDGEMEFLKRPVAPYFVPVPELDDLPPVDRTV 577 (897)
T ss_pred hhheeeeecCCCcEEEEEecccceecchhhcCCCCCCCccc
Confidence 999987543 358889997643333 55788887776
No 33
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-76 Score=678.68 Aligned_cols=501 Identities=23% Similarity=0.337 Sum_probs=403.5
Q ss_pred ChHhhhcHhC--CCCEEEEEecCCCCChh-hhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQE--GLNVAILSKVFPTRSHT-VAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVV 77 (786)
Q Consensus 1 L~AA~~aa~~--G~~V~vvek~~~~~g~s-~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i 77 (786)
|+||++|++. |++|+||||....+|++ +.++||+++.... +.|+++.|+.|+++.+.+++|+++++.+++++++.+
T Consensus 22 l~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~-~~d~~~~~~~d~~~~~~~~~d~~~v~~~~~~s~~~i 100 (554)
T PRK08275 22 PMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIP-GHATPEQYTKEITIANDGIVDQKAVYAYAEHSFETI 100 (554)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhcc-CCCCHHHHHHHHHHhcCCCccHHHHHHHHHhhHHHH
Confidence 5899999987 78999999998754544 4566677654432 258999999999999999999999999999999999
Q ss_pred HHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCC
Q psy9575 78 YELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGD 157 (786)
Q Consensus 78 ~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~ 157 (786)
+||+++|++|.+..+|.+..+.. | ...+ ....+.+|..+++.|.+.+++.||+|++++.+++|+++++|+
T Consensus 101 ~~L~~~Gv~f~~~~~g~~~~~~~--~-------~~~~-~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~ 170 (554)
T PRK08275 101 QQLDRWGVKFEKDETGDYAVKKV--H-------HMGS-YVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADGR 170 (554)
T ss_pred HHHHHCCCeeEeCCCCCEeeecc--c-------ccCc-ccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCe
Confidence 99999999998876665542211 1 0000 111234788999999999999999999999999999873489
Q ss_pred EEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc------Ccc-CcccCCCchHHHHHHHHCCCCccCCCccccccccccCC
Q psy9575 158 ILGVVALEMETGNIMILESKITILATGGGGRI------WAA-STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGA 230 (786)
Q Consensus 158 v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~------~~~-~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~ 230 (786)
|+|+++++..+|+...+.||+|||||||++++ |.. +++++.+||||+.||+++||.+.+|||+||||+.....
T Consensus 171 v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~p~~~~~~ 250 (554)
T PRK08275 171 VAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLECFQINPLIKDYN 250 (554)
T ss_pred EEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceEEEEeceeecCC
Confidence 99999887678887889999999999999987 322 33557899999999999999999999999999865433
Q ss_pred CCccccccc-cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchh
Q psy9575 231 GVLITEGVR-GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPS 309 (786)
Q Consensus 231 ~~~~~~~~~-~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~ 309 (786)
+.... .+. +.|++++|.+|+||+++|+|. ..++++|+.++++|++ + ||+|+++++++.+.. ++.
T Consensus 251 ~~~~~-~~~~~~g~~lvn~~G~RF~~~~~~~-------~~~~~ai~~e~~~g~g--~----v~ld~~~~~~~~~~~-~~~ 315 (554)
T PRK08275 251 GPACA-YVTGPLGGYTANAKGERFIECDYWS-------GQMMWEFYQELQSGNG--P----VFLKLDHLAEETIQT-IET 315 (554)
T ss_pred CCccc-eeccccCcEEeCCCCCccccccCCc-------hHHHHHHHHHHHcCCC--c----EEEECCCCCHHHHHH-HHh
Confidence 22111 112 468899999999999988764 3589999999998876 3 999999998776542 443
Q ss_pred HH---------HHHHhhcCCCCCCCCeeeeeccc-----ccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCC
Q psy9575 310 IL---------EIGNKFANVNALKEPIPVIPTIH-----YQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHG 375 (786)
Q Consensus 310 ~~---------~~~~~~~g~d~~~~~i~v~p~~~-----~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~G 375 (786)
+. ..+.. .|+|+.++|+||.|++| |+||||+||.+++ |+|||||||||+++.
T Consensus 316 ~~~~~~~p~~~~~~~~-~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~---------t~i~gl~a~Ge~~~~---- 381 (554)
T PRK08275 316 ILHTNERPSRGRFHEG-RGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAE---------TTVPGLYAAGDMASV---- 381 (554)
T ss_pred hhhhcccchHHHHHHH-cCCCcccCcccccCCCceeecccccCcEEECCCCc---------cCCCCEEECcccCCc----
Confidence 32 22233 69999999999999887 4677999999998 999999999998732
Q ss_pred CCccChhhhHHHHHHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccC
Q psy9575 376 ANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRT 455 (786)
Q Consensus 376 a~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~ 455 (786)
+++++.+|++||++||++|++|++... .+..+.+.++...+++..++...++.+|.+++++||++||+|+||+|+
T Consensus 382 ----~~~~~~~~~~~G~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~ 456 (554)
T PRK08275 382 ----PHNYMLGAFTYGWFAGENAAEYVAGRD-LPEVDAAQVEAERARVLAPLHREDGLPPAQVEYKLRRLVNDYLQPPKV 456 (554)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHhhcCcccc
Confidence 268999999999999999999986542 222222233444455555555455678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcc--cccCCCCCCCccccc
Q psy9575 456 DKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGA--HAHNDFKNRDDINWL 533 (786)
Q Consensus 456 ~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~--h~R~D~p~~d~~~~~ 533 (786)
+++|++||++|++|++++.++.+.|. ++|++++|++|||++|+++++|||+||||||+ |||+|||++||++|+
T Consensus 457 ~~~L~~al~~l~~l~~~~~~~~~~~~-----~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~~~H~R~DyP~~~~~~~~ 531 (554)
T PRK08275 457 TRKMEIGLQRFAEIREDLERIKARDP-----HELMRALEVSSIRDCAEMAARASLFRTESRWGLYHYRVDFPERNDAEWF 531 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCCChhhhc
Confidence 99999999999999988877766664 89999999999999999999999999999998 999999999999999
Q ss_pred ceEEEEec-C--ceeeeccCc
Q psy9575 534 KHSIWYSN-G--NRIEFKPVN 551 (786)
Q Consensus 534 ~~~~~~~~-~--~~~~~~~~~ 551 (786)
||++++++ + ++++++|++
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~ 552 (554)
T PRK08275 532 CHTHLRKDEDGRMVSFKRPVE 552 (554)
T ss_pred eeeEEEEcCCCceEEEeeccC
Confidence 99988763 2 456666554
No 34
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=100.00 E-value=2.3e-76 Score=679.96 Aligned_cols=499 Identities=23% Similarity=0.301 Sum_probs=401.8
Q ss_pred ChHhhhcHhC--CCCEEEEEecCCCCChhhhccc--CeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQE--GLNVAILSKVFPTRSHTVAAQG--GISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKV 76 (786)
Q Consensus 1 L~AA~~aa~~--G~~V~vvek~~~~~g~s~~a~G--gi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~ 76 (786)
|+||++|++. |++|+||||....++++ +++| ++++.... +|+++.|+.++++.+.+++|+++++.+++++++.
T Consensus 24 l~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~--~ds~e~~~~d~~~~~~~~~d~~lv~~~~~~s~~~ 100 (608)
T PRK06854 24 CGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGE--GETPEDYVRYVRKDLMGIVREDLVYDIARHVDSV 100 (608)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCcccccccccc--CCCHHHHHHHHHHhccCCCCHHHHHHHHHhHHHH
Confidence 5899999998 99999999998765554 4544 34443433 6899999999999999999999999999999999
Q ss_pred HHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCC-ceEEeceEEEeeeecCC
Q psy9575 77 VYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAK-TNFFIEWMAIDLISDSE 155 (786)
Q Consensus 77 i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~G-v~i~~~~~v~~L~~~~~ 155 (786)
++||+++|++|++..+|.+.. . ++ .+. ..+|..+...|.+.+++.| |+|++++.+++|++++
T Consensus 101 i~~L~~~Gv~f~~~~~G~~~~--~-g~---------~~~----~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~- 163 (608)
T PRK06854 101 VHLFEEWGLPIWKDENGKYVR--R-GR---------WQI----MINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD- 163 (608)
T ss_pred HHHHHHcCCeeeecCCCCccc--c-CC---------ccC----CCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-
Confidence 999999999998876665432 1 11 111 1357788999999998875 9999999999999886
Q ss_pred CCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCc---------ccCCCchHHHHHHHHCCCCccCCCcccccccc
Q psy9575 156 GDILGVVALEMETGNIMILESKITILATGGGGRIWAAST---------NAFINTGDGLGMAARAGLPLEDMEFWQFHPTG 226 (786)
Q Consensus 156 g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~---------~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~ 226 (786)
++|+|+++++..+|+...|.||+|||||||++.+|.+++ +++.+||||+.||+++||.+.|||| ||||+.
T Consensus 164 g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~-qf~p~~ 242 (608)
T PRK06854 164 NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFEN-RFIPLR 242 (608)
T ss_pred CEEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCCcc-eEeccc
Confidence 899999988767787778999999999999999887643 2678999999999999999999999 999997
Q ss_pred ccC----CCCccccccccCCcEEEcCCCCccccccCCccC--------CCCchhHHHHHHHHHHHhcCCCCCCCCeEEEe
Q psy9575 227 VAG----AGVLITEGVRGEGGILINSNGERFMERYAPILK--------DLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLD 294 (786)
Q Consensus 227 ~~~----~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~--------~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld 294 (786)
+.. .+.+ .+++|++++|.+|+|||++|+|... +++|||+++++|+.++.+|++ + ||||
T Consensus 243 ~~~~~~~~~~~----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e~~~g~g--~----v~lD 312 (608)
T PRK06854 243 FKDGYGPVGAW----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGRG--P----IYMD 312 (608)
T ss_pred cCCCCCCcccc----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHHHhcCCC--C----eEEE
Confidence 533 1222 3578999999999999999998543 457899999999999999877 3 9999
Q ss_pred CCCCC------hhHHHhHc---hhHHHHHHhhcCCCCCCCCeeeeecccccccC------cccC-------------CCC
Q psy9575 295 LRHIN------SETIINRL---PSILEIGNKFANVNALKEPIPVIPTIHYQMGG------IPTN-------------IYG 346 (786)
Q Consensus 295 ~~~~~------~~~~~~~~---~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GG------i~vd-------------~~~ 346 (786)
+++++ .+.++.++ +.....+.. .|+||.++||||.|++||+||| |.|| .++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi~vd~~~~~~~~~~~~~~~~ 391 (608)
T PRK06854 313 TEEALQDKHLESELWEDFLDMTPGQALLWAA-QNIEPEEENSEIMGTEPYIVGSHSGASGYWVSGPEDWVPEEYKWGYNR 391 (608)
T ss_pred cccccccchhHHHHHHHHhccCHHHHHHHHH-cCCCcccCceeeeccCCeeecCCCCceEEEecCccccccccccccccc
Confidence 98875 23345544 444444444 5999999999999999999998 8999 666
Q ss_pred cccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhcc-CCCCCCcccHHHHHHHHhh
Q psy9575 347 QVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI-HNKKLPINSIDIIIDRLSK 425 (786)
Q Consensus 347 ~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~ 425 (786)
+ |+|||||||||+++++.| ++.++++. +|++||.+|+++++... .......++++...+++..
T Consensus 392 ~---------T~v~glyA~Ge~~~~~~~---~l~~~s~~----~g~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (608)
T PRK06854 392 M---------TTVEGLFAAGDVVGGSPH---KFSSGSFA----EGRIAAKAAVRYILDNKDEKPEIDDDQIEELKKEIYA 455 (608)
T ss_pred c---------cCCCCEEEeeecCCCCcc---hhHHHHHH----HHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHHh
Confidence 5 999999999999865544 46666655 59999999999986531 1222333333333333332
Q ss_pred hhh--------------CCCCCCHHHHHHHHHHHHHhccccc-----cCHHHHHHHHHHHHHHHHHhccccccCCCcccc
Q psy9575 426 LEN--------------NKGSESVQSVANDIRKTMQNYCGVF-----RTDKLMKNGYKKIMILDERRKYISFKDKSKIFN 486 (786)
Q Consensus 426 ~~~--------------~~~~~~~~~~~~~l~~~m~~~~g~~-----r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~ 486 (786)
++. ...+.++.+++.+||++||+|+||+ |++++|+++|++|++|+++++.+.+.|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~~~~~~----- 530 (608)
T PRK06854 456 PLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKLAARDL----- 530 (608)
T ss_pred HHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhccCCCH-----
Confidence 221 1123568899999999999999998 9999999999999999988877766664
Q ss_pred hHHHHHHhHhhHHHHHHHHHHHHhhcccCC--cccccCCCCCCCcccccceEEEEec--CceeeeccCcC
Q psy9575 487 TARIEALELDNLIETAKATISSAISRKESR--GAHAHNDFKNRDDINWLKHSIWYSN--GNRIEFKPVNL 552 (786)
Q Consensus 487 ~~l~~~~e~~~~~~~a~~~~~aal~R~ESR--G~h~R~D~p~~d~~~~~~~~~~~~~--~~~~~~~~~~~ 552 (786)
++|++++|++||+++|+++++|||+||||| |+|||+|||++||++|++|++++++ ++++.++++|+
T Consensus 531 ~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (608)
T PRK06854 531 HELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNSRYDPGTGEWTIRKLPY 600 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChhhhcEEEEEEEcCCCCcEEEEEecc
Confidence 899999999999999999999999999999 9999999999999999999987763 46777777774
No 35
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.4e-75 Score=654.31 Aligned_cols=443 Identities=32% Similarity=0.538 Sum_probs=382.3
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||+.|++.|++|+||||.. ..++|.+++||+++...+ +|+++.|+.|+++.+.+++|+++++.+++++++.++||
T Consensus 14 l~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~~--~ds~e~~~~d~~~~~~~~~d~~~v~~~~~~~~~~i~~L 90 (466)
T PRK08401 14 LTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPILE--GDSIRAHVLDTIRAGKYINDEEVVWNVISKSSEAYDFL 90 (466)
T ss_pred HHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccCC--CCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999985 457788899999877665 79999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
+++|++|++. ..+++| +.+|.++..+.+|..++..|.+.+++.||+++++ .+++|+.++ ++|+|
T Consensus 91 ~~~Gv~f~~~-------~~~~g~-------~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~G 154 (466)
T PRK08401 91 TSLGLEFEGN-------ELEGGH-------SFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYG 154 (466)
T ss_pred HHcCCCcccC-------CCcCCc-------cCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEE
Confidence 9999999753 134666 7888888888899999999999999999999876 799998875 89999
Q ss_pred EEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC--CCCcccccc
Q psy9575 161 VVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG--AGVLITEGV 238 (786)
Q Consensus 161 ~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~--~~~~~~~~~ 238 (786)
+.. +++ .+.|++|||||||++++|..+++++.++|||+.||+++||.+.||||+||||+.+.. .++++++++
T Consensus 155 v~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~~~~~~~~l~~e~~ 228 (466)
T PRK08401 155 VFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKRGTYLISEAV 228 (466)
T ss_pred EEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEecccccCCCCCeEEeeec
Confidence 876 343 588999999999999999988999999999999999999999999999999987654 246788889
Q ss_pred ccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHHHhhc
Q psy9575 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFA 318 (786)
Q Consensus 239 ~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
+++|+++||.+|+||++ |+.+|++++++++.++.+++ ++|+|.+++. .+.+.+|.+.+.+.+ .
T Consensus 229 r~~g~ilvN~~G~RF~~-------E~~~rd~v~~ai~~~~~~~~-------~v~ld~~~~~--~~~~~~~~~~~~~~~-~ 291 (466)
T PRK08401 229 RGAGAKLVTGDGERFVN-------ELETRDIVARAIYRKMQEGK-------GVFLDATGIE--DFKRRFPQIYAFLRK-E 291 (466)
T ss_pred ccCceEEECCCCCChhc-------ccccHHHHHHHHHHHHhcCC-------EEEEeCcCHH--HHHHHhHHHHHHHHH-c
Confidence 99999999999999998 67889999999999987764 3999999873 466778888777777 6
Q ss_pred CCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 319 NVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 319 g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
|+|+.++++||.|..|||||||+||.++| |+|||||||||++++|+||+|||+|+||++++|||++||++|
T Consensus 292 G~D~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~a 362 (466)
T PRK08401 292 GIDPSRDLIPVTPIAHYTIGGISVDTFYR---------TGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTI 362 (466)
T ss_pred CCCcCCcccccccceeecCCCEEECCCCc---------ccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 999999999999977999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccc
Q psy9575 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478 (786)
Q Consensus 399 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~ 478 (786)
++.... .... . . .+... ..+..+ .+||++||+++||+|++++|+++|.+|+.|+++
T Consensus 363 a~~~~~------~~~~-~---~----~~~~~---~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~~~~~~l~~~------ 418 (466)
T PRK08401 363 SRERPK------LREV-K---E----PPYHG---YELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD------ 418 (466)
T ss_pred hhhCcC------cccc-c---h----hhhhc---cccccH-HHHHHHHhccceEEECHHHHHHHHHHHHHHHhc------
Confidence 864211 0000 0 0 01100 012233 569999999999999999999999999888631
Q ss_pred cCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcccccCCCCCCCcccccceE
Q psy9575 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHS 536 (786)
Q Consensus 479 ~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~h~R~D~p~~d~~~~~~~~ 536 (786)
.+|+++|+++++|||+|+||||+|||+|||++|+ +|.++.
T Consensus 419 -----------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~-~~~~~~ 458 (466)
T PRK08401 419 -----------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRK-EFERPS 458 (466)
T ss_pred -----------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccCh-hhhccc
Confidence 2567899999999999999999999999999765 798876
No 36
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.4e-60 Score=529.80 Aligned_cols=409 Identities=32% Similarity=0.507 Sum_probs=346.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||++|+ .|++|+||||....+|+|.+++||+++..+ .|+++.|++|+++.+.+.+|+++++.+++++++.++||
T Consensus 17 l~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~---~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL 92 (433)
T PRK06175 17 LYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARN---KDDITSFVEDTLKAGQYENNLEAVKILANESIENINKL 92 (433)
T ss_pred HHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCC---CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57999985 699999999999988999999999986543 68899999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v~ 159 (786)
+++|++|++..+ .+....+++| +.+|..+..+.+|..++..|.+++++ .||+|++++.+++|+.++ ++|+
T Consensus 93 ~~~Gv~f~~~~~-~~~~~~~g~~-------~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~ 163 (433)
T PRK06175 93 IDMGLNFDKDEK-ELSYTKEGAH-------SVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCI 163 (433)
T ss_pred HHcCCccccCCC-ceeeeccCcc-------ccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEE
Confidence 999999987643 3333556777 78899998888999999999998876 499999999999999885 8999
Q ss_pred EEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC-----CCCcc
Q psy9575 160 GVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG-----AGVLI 234 (786)
Q Consensus 160 G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~-----~~~~~ 234 (786)
|++..+ +++.+.|.||+|||||||++++|..++++..++|||+.||+++||.+.+|+|+||||+.+.+ ..+++
T Consensus 164 Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~~~~~~~~l~ 241 (433)
T PRK06175 164 GAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEETIEGKKFLI 241 (433)
T ss_pred EEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccCCCCCcceEe
Confidence 988754 45556799999999999999999988999999999999999999999999999999987653 23667
Q ss_pred ccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhHchhHHHHH
Q psy9575 235 TEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIG 314 (786)
Q Consensus 235 ~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~ 314 (786)
++.++++|+++||.+|+||++ |+.+++++++++..++.++.. .++|+|.++++.+.+.+++|.+.+.+
T Consensus 242 ~~~~~~~g~ilVN~~G~RF~~-------E~~~~~~~~~ai~~~~~~~~~-----~~v~~D~~~~~~~~~~~~~~~~yn~~ 309 (433)
T PRK06175 242 SESVRGEGGKLLNSKGERFVD-------ELLPRDVVTKAILEEMKKTGS-----NYVYLDITFLDKDFLKNRFPTIYEEC 309 (433)
T ss_pred ehhhcCCceEEECCCCCChhh-------ccccHHHHHHHHHHHHHhcCC-----CeEEEecccCcHHHHHHHHHHHHHHH
Confidence 788889999999999999998 677899999999998866432 36999999999888999998876666
Q ss_pred HhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHH
Q psy9575 315 NKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSA 394 (786)
Q Consensus 315 ~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~A 394 (786)
.+ .|+|+.+++++|.|..|||||||+||.++| |+|||||||||++|+|+||+||++|+||++|+|||++|
T Consensus 310 ~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~---------t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~A 379 (433)
T PRK06175 310 LK-RGIDITKDAIPVSPAQHYFMGGIKVDLNSK---------TSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRG 379 (433)
T ss_pred HH-hCcCCCCCcEEEEcceeeecCCEEECCCcc---------ccCCCeEecccccccCCCccccchhHHHHHHHHHHHHH
Confidence 66 599999999999999999999999999998 99999999999997799999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCcccHHHHHHHHhhhhhCCCCCCHHHHHHHHHHHHHhccccccCHHHHHHHHH
Q psy9575 395 GNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464 (786)
Q Consensus 395 g~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~l~~~l~ 464 (786)
|++|+..+..... ...... ........+.+.++++++.. +.|..+.|++++.
T Consensus 380 g~~a~~~~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 431 (433)
T PRK06175 380 AEKINSEIDNIKL-NITKVY---------------TLKHDVEYYSLLNKKIIIKE--IEKLRGDLKDELV 431 (433)
T ss_pred HHHHHHhhhcccc-cccccc---------------ccccchhHHHHHHHHHHHHH--HHhhHHHHHHHhh
Confidence 9999876543221 000000 00123344456677777766 8888888887653
No 37
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=4.1e-51 Score=398.32 Aligned_cols=224 Identities=52% Similarity=0.964 Sum_probs=209.0
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccccC
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELK 635 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~~ 635 (786)
+|+||+|+.. +|||++|+|+++++ +||||||.+|+.++||+|+|+.+||.|+||||+|.|||+++|||+|.+.+..
T Consensus 6 ~i~R~~p~~~---~p~~~~yev~~~~~-~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~~~~ 81 (234)
T COG0479 6 KIYRYNPDDD---KPYWQTYEVPYDEG-MTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMKDLE 81 (234)
T ss_pred EEEEECCCCC---CcceEEEEecCCCC-CcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhhhcc
Confidence 4899999753 89999999999977 9999999999998999999999999999999999999999999999999876
Q ss_pred c-ceEECCCCCCCceeeeeecchHhHHhcccccceeecCC-CCCcccccCChhHHHhhhchhhCcccCcccCCCCCcccC
Q psy9575 636 Q-PIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNN-NPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWN 713 (786)
Q Consensus 636 ~-~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~ 713 (786)
. +++|+||++||++|||+||++.|+++++.++||+..+. ..+.. .+++|++++.+++++.||.||.|+++||++.++
T Consensus 82 ~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~~~~ 160 (234)
T COG0479 82 EGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGE-RLQSPEEREKLDELSECILCGCCTAACPSIWWN 160 (234)
T ss_pred CCceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCCCcc-ccCCHHHHHHHHhhhhccccchhhhhCCccccc
Confidence 6 69999999999999999999999999999999999843 33344 789999999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHHhc
Q psy9575 714 SDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRI 785 (786)
Q Consensus 714 ~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~~ 785 (786)
+ +|+||+++..++|++.|+|+....+|+..+....++|.|++|++|++|||+||++...|.++|+++++++
T Consensus 161 ~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~~ 231 (234)
T COG0479 161 P-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKRG 231 (234)
T ss_pred c-CCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 6 7999999999999999999999999999888888999999999999999999999999999999988775
No 38
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=1.3e-49 Score=451.26 Aligned_cols=368 Identities=29% Similarity=0.440 Sum_probs=300.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||++|++.|++|+||||....+|+|..++||+++..+.. + +|+++.++.++++.+.+..|+++++.+++++++
T Consensus 74 l~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~ 153 (506)
T PRK06481 74 MSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDKALLRYFVDNSAS 153 (506)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHH
Confidence 57999999999999999999888888888888887654422 1 678899999999999999999999999999999
Q ss_pred HHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecC--CcHHHHHHHHHHHHhcCCceEEeceEEEeeeec
Q psy9575 76 VVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD--RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISD 153 (786)
Q Consensus 76 ~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~ 153 (786)
.++||+++|++|... ...+++ +.+|.+++.+ ..|..++..|.+.+++.||+|++++++++|+.+
T Consensus 154 ~i~wl~~~Gv~~~~~-------~~~~g~-------~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 154 AIDWLDSMGIKLDNL-------TITGGM-------SEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred HHHHHHHcCceEeec-------ccCCCC-------CCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 999999999998642 122344 4455554432 356789999999999999999999999999987
Q ss_pred CCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc------C------ccCcccCCCchHHHHHHHHCCCCccCCCccc
Q psy9575 154 SEGDILGVVALEMETGNIMILESKITILATGGGGRI------W------AASTNAFINTGDGLGMAARAGLPLEDMEFWQ 221 (786)
Q Consensus 154 ~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~------~------~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q 221 (786)
+ |+|+|+.+.. .+++...|+||+|||||||++.+ | ..+++++++||||+.||+++||.+.+|+++|
T Consensus 220 ~-g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~~aGA~~~~~~~~~ 297 (506)
T PRK06481 220 D-GKVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQIQ 297 (506)
T ss_pred C-CEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHHHcCCCccCchhhh
Confidence 5 8999998764 45566679999999999999986 2 1245678899999999999999999999999
Q ss_pred cccccccCCCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeC------
Q psy9575 222 FHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDL------ 295 (786)
Q Consensus 222 ~~p~~~~~~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~------ 295 (786)
+||+.....++++.+..++.++++||.+|+||++| ..+++.+++++..+. +. ..++++|.
T Consensus 298 ~~p~~~~~~~~~~~~~~~~~~~i~Vn~~G~RF~nE-------~~~~~~~~~~~~~~~--~~-----~~~~i~D~~~~~~~ 363 (506)
T PRK06481 298 IHPTVQQSKSYLIGEAVRGEGAILVNQKGKRFGNE-------LDTRDKVSAAINKLP--EK-----YAYVVFDSGVKDRV 363 (506)
T ss_pred hCCCccCCCcceehhhccCCceEEECCCCCCCCCC-------CccHHHHHHHHHhCc--CC-----cEEEEECHHHHhhh
Confidence 99987666666666667778899999999999994 445565655554321 00 01122221
Q ss_pred ------------------------CCCChhHHHhHchhHHHHHHhhcCCCC------------CCCC---eeeeeccccc
Q psy9575 296 ------------------------RHINSETIINRLPSILEIGNKFANVNA------------LKEP---IPVIPTIHYQ 336 (786)
Q Consensus 296 ------------------------~~~~~~~~~~~~~~~~~~~~~~~g~d~------------~~~~---i~v~p~~~~t 336 (786)
.+++++.|+++++.|++.+.. |.|+ .+.| +++.|..|+|
T Consensus 364 ~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~~--g~D~~fgr~~~~~~~i~~~PfYai~~~p~~~~T 441 (506)
T PRK06481 364 KAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVKN--KKDEAFGRTTGMDNDLSTGPYYAIKIAPGIHYT 441 (506)
T ss_pred hhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCcccCCCCCCCCCCcCCCEEEEEEecceeec
Confidence 146788888999999998876 3332 2455 8899999999
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
+||++||+++||||.++ ++|||||||||++ ||+||.||++|+++++|++|||+||++|+++++.
T Consensus 442 ~GGl~in~~~qVld~~g---~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~~~ 505 (506)
T PRK06481 442 MGGVKINTNTEVLKKDG---SPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFAKA 505 (506)
T ss_pred ccCeEECCCceEEcCCC---CEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999 9999999999998 7999999999999999999999999999998753
No 39
>KOG2404|consensus
Probab=100.00 E-value=4e-50 Score=394.56 Aligned_cols=367 Identities=29% Similarity=0.453 Sum_probs=295.7
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCC-----CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMS-----KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~-----~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+|+..+-..|-.|+|+||....+|+|.-|..||+++..+.+ .|+|+.++.|++..+.+-..|++++.++.+++.
T Consensus 22 Lsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~eLm~~La~~S~~ 101 (477)
T KOG2404|consen 22 LSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPELMEKLAANSAS 101 (477)
T ss_pred hhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHHHHHHHHhcCHH
Confidence 567777777777799999999999999999999998876643 799999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCccccCCCcccccCCCCccCCCCCCCcceEEEec--CCcHHHHHHHHHHHHhcC------CceEEeceE
Q psy9575 76 VVYELEH-FGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVA--DRTGHALLHTLYQRNLHA------KTNFFIEWM 146 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~--~~~g~~i~~~L~~~~~~~------Gv~i~~~~~ 146 (786)
+++||.. ++++++.. ...||| +.||++... .+.|.+|+.+|..++++. -++|..+++
T Consensus 102 AvewL~~ef~lkld~l-------a~lgGH-------SvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nsk 167 (477)
T KOG2404|consen 102 AVEWLRGEFDLKLDLL-------AQLGGH-------SVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSK 167 (477)
T ss_pred HHHHHhhhcccchHHH-------HHhcCC-------CCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcce
Confidence 9999986 78877643 467899 999998543 456889999998888753 489999999
Q ss_pred EEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc-------C------ccCcccCCCchHHHHHHHHCCCC
Q psy9575 147 AIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI-------W------AASTNAFINTGDGLGMAARAGLP 213 (786)
Q Consensus 147 v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~-------~------~~~~~~~~~tGdg~~~a~~aGa~ 213 (786)
|++|+.++ |+|.|+...| .+|+...+.+++||+|||||+.. | .+++|....||||+.|.+..||.
T Consensus 168 vv~il~n~-gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~l~klga~ 245 (477)
T KOG2404|consen 168 VVDILRNN-GKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKMLMKLGAS 245 (477)
T ss_pred eeeeecCC-CeEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHHHHHhCcc
Confidence 99999775 9999999998 67777778899999999999942 2 36889999999999999999999
Q ss_pred ccCCCccccccccccC-------CCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCC
Q psy9575 214 LEDMEFWQFHPTGVAG-------AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGP 286 (786)
Q Consensus 214 l~~~e~~q~~p~~~~~-------~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~ 286 (786)
+++|+.+|.||+++.. +.++..|++||.|++++|..|+||.+ |+..||++.-.|.+... |
T Consensus 246 liDmd~vqvhptgfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~n-------ELg~RDyvTgei~kl~~------P 312 (477)
T KOG2404|consen 246 LIDMDQVQVHPTGFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGN-------ELGTRDYVTGEIQKLKC------P 312 (477)
T ss_pred ccccceeEecccCccCCCCchhHHHHHHHHHhccCceEEEeccchhhhc-------ccccchhhhHhHHhhcC------C
Confidence 9999999999998654 24677899999999999999999999 88899988877765210 1
Q ss_pred -CCCeEEEeCC--------------------------------CCChhHHHhHchhHHHHHHhhcCCCCCC---------
Q psy9575 287 -NKDHVMLDLR--------------------------------HINSETIINRLPSILEIGNKFANVNALK--------- 324 (786)
Q Consensus 287 -~~~~v~ld~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~g~d~~~--------- 324 (786)
..+..++-+. .++...+...+..|...... .--||..
T Consensus 313 ~ednrallVmnea~~e~~~n~inFY~~K~l~kK~~~~el~s~ln~t~sel~ttl~eY~~~~~g-~~~D~fgrk~f~~s~i 391 (477)
T KOG2404|consen 313 IEDNRALLVMNEANYEAFGNNINFYMFKKLFKKYESAELASALNITESELKTTLEEYSKSFTG-KSEDPFGRKVFPVSDI 391 (477)
T ss_pred cccceeEEEecHhHHHHHhhhhhhHhHHHHHHHhhHHHHHHHhCCCHHHHHHHHHHHHHhhcC-CCCCcCCCccccCCCC
Confidence 1112333221 12223333333333332221 1113321
Q ss_pred ---CC---eeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHH
Q psy9575 325 ---EP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398 (786)
Q Consensus 325 ---~~---i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~a 398 (786)
++ -+|.|..||||||++||+..|||+.++ ..|.|||||||++ ||+||+|||||+||.+|+||||+||+.
T Consensus 392 s~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng---~vi~GlfAAGEvs-GGvHGaNRLgGsSLLeCVVFGr~Ag~~- 466 (477)
T KOG2404|consen 392 SPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNG---KVIVGLFAAGEVS-GGVHGANRLGGSSLLECVVFGRTAGKA- 466 (477)
T ss_pred CccceeEEEEEeeeEEEeccceEechhhhhhccCC---cEeeeeeEcceec-cccccccccCcccceeeeeecccchhh-
Confidence 11 467899999999999999999999998 9999999999999 899999999999999999999999884
Q ss_pred HHHh
Q psy9575 399 LSLE 402 (786)
Q Consensus 399 a~~~ 402 (786)
|+.+
T Consensus 467 A~si 470 (477)
T KOG2404|consen 467 AQSI 470 (477)
T ss_pred HHhH
Confidence 4433
No 40
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.5e-49 Score=394.65 Aligned_cols=226 Identities=65% Similarity=1.248 Sum_probs=205.1
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccccC
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELK 635 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~~ 635 (786)
.|+||+|+. +..|||++|+|++.++++|||++|.+|+ ++||+|+|+.+||.|+||+|+|.|||+++|||+|++.+..
T Consensus 8 ~i~R~~~~~--~~~~~~~~y~v~~~~~~~tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~~~~~ 84 (235)
T PRK12575 8 HIYRYDPDD--DAAPRMQRYEIAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNMQALP 84 (235)
T ss_pred EEEeeCCCC--CCCceeEEEEecCCCCCCcHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcHhHcC
Confidence 489999864 5589999999999875589999999999 6899999999999999999999999999999999999876
Q ss_pred cceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCCcccccCChhHHHhhhchhhCcccCcccCCCCCcccCCC
Q psy9575 636 QPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSD 715 (786)
Q Consensus 636 ~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~~ 715 (786)
..++|+|+++||++|||+||++.|+++++.++||+..+...++.+..++|++.+.+++...||+||.|.++||++..+.+
T Consensus 85 ~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~~~~~~~ 164 (235)
T PRK12575 85 REIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPPERERLQTPQEREQLDGLYECILCACCSTACPSYWWNPD 164 (235)
T ss_pred CCEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCCccccccCCHHHHHHHHhhhhCcccccccccccCccccCC
Confidence 78999999999999999999999999999999999876544445677899999999989999999999999999977767
Q ss_pred CCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHHh
Q psy9575 716 RFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784 (786)
Q Consensus 716 ~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~ 784 (786)
+|+||+++..+++++.++++.....++..+....++|.|++||+|+++||+||++.++|.++|+.+++.
T Consensus 165 ~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI~~~~~I~~lR~~~~~~ 233 (235)
T PRK12575 165 KFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARR 233 (235)
T ss_pred CcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCCcHHHHHHHHHHHHHhc
Confidence 799999999999999999987777777766666789999999999999999999999999999988765
No 41
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=4.2e-49 Score=397.74 Aligned_cols=223 Identities=55% Similarity=1.040 Sum_probs=201.0
Q ss_pred ccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccccC-
Q psy9575 557 VKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELK- 635 (786)
Q Consensus 557 v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~~- 635 (786)
|+||+|+. +.+|||++|+|++.++++||||+|.+|+.++||+|+|+.+||.|+||+|+|.|||+++|||+|+|.++.
T Consensus 48 i~R~~p~~--~~~~~~~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~~ 125 (276)
T PLN00129 48 IYRWNPDN--PGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDES 125 (276)
T ss_pred EEeeCCCC--CCCceeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcCC
Confidence 88999874 558999999999986349999999999998999999999999999999999999999999999999875
Q ss_pred cceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCCc--ccccCChhHHHhhhchhhCcccCcccCCCCCcccC
Q psy9575 636 QPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPE--KERLQSPSQRKILDGLYECILCGCCSTACPSFWWN 713 (786)
Q Consensus 636 ~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~ 713 (786)
..++|+||++||++|||+||++.|+++++.++||+..+...+. .+.++++++.+.+++...||+||.|.++||++..+
T Consensus 126 ~~i~iePl~~fpVirDLvVD~~~f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~ 205 (276)
T PLN00129 126 GPTTITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWN 205 (276)
T ss_pred CcEEEEECCCCCeeeecccccHHHHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCccc
Confidence 5789999999999999999999999999999999986543322 35778999999999899999999999999998777
Q ss_pred CCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHH
Q psy9575 714 SDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELM 781 (786)
Q Consensus 714 ~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~ 781 (786)
.++|+||..+..+++++.++|+.....++..+....++|.|++|+.|+++||+||++.++|.++|+.+
T Consensus 206 ~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkgI~p~~~I~~lR~~~ 273 (276)
T PLN00129 206 PEKFLGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL 273 (276)
T ss_pred CcccccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCCCCHHHHHHHHHHHH
Confidence 77799999999999999999987777777766556699999999999999999999999999998763
No 42
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.7e-48 Score=391.54 Aligned_cols=227 Identities=31% Similarity=0.549 Sum_probs=200.5
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccccC
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELK 635 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~~ 635 (786)
.|+||+|+. .+..|||++|+|+++++ +||||||.+|+.++||+|+|+.+||.|+||+|+|.|||+++|||+|+|.+..
T Consensus 8 ~i~R~~p~~-~~~~~~~~~y~v~~~~~-~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~v~~~~ 85 (239)
T PRK13552 8 NIFRYNPQD-PGSKPHMVTYQLEETPG-MTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTLTSDYP 85 (239)
T ss_pred EEEeeCCCC-CCCCcceEEEEecCCCC-CCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhccHhhcC
Confidence 489999852 24579999999999886 9999999999998999999999999999999999999999999999999865
Q ss_pred -cceEECCCCCCCceeeeeecchHhHHhc-ccccceeecCCCC-Cc-ccccCChhHHHhhhchhhCcccCcccCCCCCcc
Q psy9575 636 -QPIIIRPLPGLPVIRDLVVDMTLFFKQF-NSIKPFLITNNNP-PE-KERLQSPSQRKILDGLYECILCGCCSTACPSFW 711 (786)
Q Consensus 636 -~~~~i~p~~~~~~~~dL~~d~~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~ 711 (786)
..++|+||++||++|||+||++.+++++ +.++||+..+... ++ .+..+++++.+.+++...||+||.|+++||++.
T Consensus 86 ~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~ 165 (239)
T PRK13552 86 DGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQ 165 (239)
T ss_pred CCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhCCCCc
Confidence 3799999999999999999999999999 8999999764222 22 356788999999999999999999999999987
Q ss_pred cCCCCCCCHHHHHHHHHHhhcCcchhhHHHh-hhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHHhc
Q psy9575 712 WNSDRFVGPAGLLQAYRFISDSRDEATNFRL-DNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRI 785 (786)
Q Consensus 712 ~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~~ 785 (786)
.+. .|+||.++..+++++.++++.....++ ..+....++|.|++||.|+++||++|++.+.|.++|+.++..|
T Consensus 166 ~~~-~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~I~~~~~I~~lr~~~~~~~ 239 (239)
T PRK13552 166 MRE-DFVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKMAATG 239 (239)
T ss_pred cCC-CccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCCCcHHHHHHHHHHHHHhcC
Confidence 654 699999999999999999987666665 4455567899999999999999999999999999999988754
No 43
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=7.5e-46 Score=454.20 Aligned_cols=381 Identities=30% Similarity=0.429 Sum_probs=298.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhc-CCCCcHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGS-DYLGDQDAIEFMCKEAP 74 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~-~~~~~~~~v~~~~~~~~ 74 (786)
|+||++|++.|++|+||||....+|+|.+++||+.+..+.. + .|+++.+..+++..+ .+..|+++++.++++++
T Consensus 422 l~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~ 501 (1167)
T PTZ00306 422 CSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGGHCDPGLVKTLSVKSA 501 (1167)
T ss_pred HHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCCCCCHHHHHHHHHhhH
Confidence 57999999999999999999888888888999998765532 1 578888888888765 57899999999999999
Q ss_pred HHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecC-------CcHHHHHHHHHHHHhc---CCceEEec
Q psy9575 75 KVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD-------RTGHALLHTLYQRNLH---AKTNFFIE 144 (786)
Q Consensus 75 ~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~-------~~g~~i~~~L~~~~~~---~Gv~i~~~ 144 (786)
+.++||+++|++|... ..++++ +.+|.++..+ ..|..++..|.+.+++ .||+|+++
T Consensus 502 e~idwL~~~Gv~f~~~-------~~~gg~-------~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~ 567 (1167)
T PTZ00306 502 DAISWLSSLGVPLTVL-------SQLGGA-------SRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTE 567 (1167)
T ss_pred HHHHHHHHcCCCceee-------eccCCC-------CCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEEC
Confidence 9999999999999642 124555 5566665432 1267788888888775 49999999
Q ss_pred eEEEeeeecCC----C----CEEEEEEEEc--CCCcEEEEEeCeEEEcCCCCCccCc---------------cCcccCCC
Q psy9575 145 WMAIDLISDSE----G----DILGVVALEM--ETGNIMILESKITILATGGGGRIWA---------------ASTNAFIN 199 (786)
Q Consensus 145 ~~v~~L~~~~~----g----~v~G~~~~~~--~~g~~~~i~AkaVVlATGG~~~~~~---------------~~~~~~~~ 199 (786)
+++++|+++++ | +|+||++.+. .+|+.+.|+||+||||||||++|.. .+++++.+
T Consensus 568 t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~~~~~~~~~~ 647 (1167)
T PTZ00306 568 TTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPWA 647 (1167)
T ss_pred CEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccCCCCCCCCCc
Confidence 99999998741 2 8999999763 2788889999999999999998741 24566789
Q ss_pred chHHHHHHHHCCCCccCCCccccccccccC-------CCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHH
Q psy9575 200 TGDGLGMAARAGLPLEDMEFWQFHPTGVAG-------AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSR 272 (786)
Q Consensus 200 tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~-------~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~ 272 (786)
||||+.||+++||.+.+|+++|+||+++.. .+.+..+.+++.++++||.+|+||++ |..+++.+++
T Consensus 648 tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~ilVN~~GkRF~n-------E~~~~~~~~~ 720 (1167)
T PTZ00306 648 TGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNGERFVN-------ELDLRSVVSQ 720 (1167)
T ss_pred ccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCcccceeeehhcCCceEEECCCCCCccc-------ccCcHHHHHH
Confidence 999999999999999999999999985432 12334455667789999999999999 4566777777
Q ss_pred HHHHHHHhcCC--CC-C---------------C-------CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhc
Q psy9575 273 AMDQEIKEGRG--CG-P---------------N-------KDHVM--LD-------LRHINSETIINRLPSILEIGNKFA 318 (786)
Q Consensus 273 ~i~~~~~~g~g--~~-~---------------~-------~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
++..+.....+ .. + . ..++. .| ..+++++.+++++..|++++.+
T Consensus 721 ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~~L~aTV~rYN~~~~~-- 798 (1167)
T PTZ00306 721 AIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVENLHRTLETYERLSTK-- 798 (1167)
T ss_pred HHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHhc--
Confidence 77655432100 00 0 0 00111 12 1146778888889999998876
Q ss_pred CCCC-------------CCCC---eeeeecccccccCcccCCCCcccccCCC-----CCcccCceeeecccCCccCCCCC
Q psy9575 319 NVNA-------------LKEP---IPVIPTIHYQMGGIPTNIYGQVIIPNND-----NNKIVNGLYAIGECACVSVHGAN 377 (786)
Q Consensus 319 g~d~-------------~~~~---i~v~p~~~~t~GGi~vd~~~~vl~~~~~-----~~t~IpGLyAaGe~a~gg~~Ga~ 377 (786)
|.|. .+.| +++.|..|+|+||+.||+++||||.|+. ..++|||||||||++ |++||.+
T Consensus 799 G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIpGLYAAGe~~-gg~~g~~ 877 (1167)
T PTZ00306 799 KVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVT-GGVHGGN 877 (1167)
T ss_pred CCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeCceEecceec-cccccCC
Confidence 4442 2344 5889999999999999999999988642 237999999999998 6899999
Q ss_pred ccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 378 RLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 378 rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
|++|+++++|++|||+||++|+++++..
T Consensus 878 y~gG~sl~~a~~fGriAG~~aa~~~~~~ 905 (1167)
T PTZ00306 878 RLGGNSLLECVVFGKIAGDRAATILQKK 905 (1167)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988654
No 44
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=100.00 E-value=3.2e-46 Score=419.50 Aligned_cols=362 Identities=34% Similarity=0.506 Sum_probs=290.3
Q ss_pred ChHhhhcHhCC-CCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEG-LNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAP 74 (786)
Q Consensus 1 L~AA~~aa~~G-~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~ 74 (786)
|+||++|+++| ++|+||||....+|+|.+++|++++..+.. + +|+++.++.++++.+.+..++++++.++++++
T Consensus 12 l~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (439)
T TIGR01813 12 LSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDPELVRILAEESA 91 (439)
T ss_pred HHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccH
Confidence 58999999999 999999999888888888888887765432 1 57899999999999989999999999999999
Q ss_pred HHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecC--CcHHHHHHHHHHHHhcCCceEEeceEEEeeee
Q psy9575 75 KVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD--RTGHALLHTLYQRNLHAKTNFFIEWMAIDLIS 152 (786)
Q Consensus 75 ~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~ 152 (786)
+.++||+ +|+.|..... ...+++ ..+|.+++.+ ..|..++..|.+.+++.||+|++++++++|+.
T Consensus 92 ~~i~wl~-~~~~~~~~~~-----~~~~~~-------~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~ 158 (439)
T TIGR01813 92 DAVDWLQ-DGVGARLDDL-----IQLGGH-------SVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQ 158 (439)
T ss_pred HHHHHHH-hCCCeeeccc-----cccCCc-------CCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEE
Confidence 9999999 7777654211 123344 4455554433 46788999999999999999999999999998
Q ss_pred cCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc------Cc------cCcccCCCchHHHHHHHHCCCCccCCCcc
Q psy9575 153 DSEGDILGVVALEMETGNIMILESKITILATGGGGRI------WA------ASTNAFINTGDGLGMAARAGLPLEDMEFW 220 (786)
Q Consensus 153 ~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~------~~------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 220 (786)
+++++|+|+++.+ .+++...+.+|+|||||||++.| |. .+.+++.++|||+.||+++||.+.+|+++
T Consensus 159 ~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~ 237 (439)
T TIGR01813 159 DDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGAALVDMDYI 237 (439)
T ss_pred CCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCCCccCCchh
Confidence 7558999998875 55666678999999999999984 42 34567789999999999999999999999
Q ss_pred ccccccccCC-CCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEe-----
Q psy9575 221 QFHPTGVAGA-GVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLD----- 294 (786)
Q Consensus 221 q~~p~~~~~~-~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld----- 294 (786)
|+||+...+. +++..+..+..++++||.+|+||++| ..+++.+.+++..+... . .++.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~i~vn~~G~RF~~E-------~~~~~~~~~~~~~~~~~--~-----~~~i~d~~~~~ 303 (439)
T TIGR01813 238 QAHPTASPDEGGFLISEAVRGYGAILVNKTGERFMNE-------LATRDTVSDAILAQPGK--S-----AYLIFDDDVYK 303 (439)
T ss_pred heecccccCCcceeehhhcccCcEEEECCCCCCcccc-------CCcHHHHHHHHHhCCCC--c-----eEEEECHHHHH
Confidence 9999866543 44455556677899999999999994 44555555555433210 0 011111
Q ss_pred -------------------------CCCCChhHHHhHchhHHHHHHhhcCCCC------------CCCC---eeeeeccc
Q psy9575 295 -------------------------LRHINSETIINRLPSILEIGNKFANVNA------------LKEP---IPVIPTIH 334 (786)
Q Consensus 295 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~d~------------~~~~---i~v~p~~~ 334 (786)
..+++++.+.+++..|++++.. |.|+ .+.| +++.|..|
T Consensus 304 ~~~~~~~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~~--g~D~~f~r~~~~~~~i~~~Pfya~~~~~~~~ 381 (439)
T TIGR01813 304 KAEMVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYNEYVAS--GKDTPFGRPMDMPDDLSKSPYYAIKVTPGVH 381 (439)
T ss_pred hhhhHHHHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCcccCCCCCCCCCCCCCCEEEEEEEcCcc
Confidence 1146777888888999998876 5443 2456 88999999
Q ss_pred ccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHH
Q psy9575 335 YQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGN 396 (786)
Q Consensus 335 ~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~ 396 (786)
+|+|||+||+++||++.|+ ++|||||||||++ +|+||.+|++|+++++|++||++||+
T Consensus 382 ~t~GGl~~d~~~~vl~~~g---~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 382 HTMGGVKINTKAEVLDAQG---KPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred ccccCeEECCCCeEECCCC---CEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 9999999999999999999 9999999999998 79999999999999999999999984
No 45
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=1.2e-47 Score=387.23 Aligned_cols=225 Identities=29% Similarity=0.536 Sum_probs=199.8
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhc-------cCCCcccccCCCCCcccceEEEeCCccccccc
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYD-------IDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~-------~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~ 628 (786)
.|+||+| . +.+||||+|+|+++++ +||||||.+|+.+ ++++|+|+.+||.|+||+|+|.|||+++|||+
T Consensus 9 ~i~R~~~-~--~~~~~~q~y~v~~~~~-~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~LAC~ 84 (249)
T PRK08640 9 IIKRQDG-P--DSKPYWEEFEIPYRPN-MNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPRQACT 84 (249)
T ss_pred EEEeeCC-C--CCCceeEEEEecCCCC-CcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccchhhh
Confidence 4899998 3 5589999999999876 9999999999874 47789999999999999999999999999999
Q ss_pred ccccccCcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCC-CCcccccCChhHHHhhhchhhCcccCcccCCC
Q psy9575 629 TNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNN-PPEKERLQSPSQRKILDGLYECILCGCCSTAC 707 (786)
Q Consensus 629 t~v~~~~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~C 707 (786)
|.|.+...+++|+||++||++|||+||++.++++++.++||+..+.. .+..+..+++++....++...||+||.|+++|
T Consensus 85 t~v~~~~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~saC 164 (249)
T PRK08640 85 ALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWAYELSKCMTCGCCLEAC 164 (249)
T ss_pred ChHHHcCCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHHhhhhhccCcCcccccC
Confidence 99988778899999999999999999999999999999999987653 33445668899988888899999999999999
Q ss_pred CCcccCCCCCCCHHHHHHHHHHhhcC-cchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHHhc
Q psy9575 708 PSFWWNSDRFVGPAGLLQAYRFISDS-RDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRI 785 (786)
Q Consensus 708 P~~~~~~~~~~gp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~~ 785 (786)
|++..++ +|+||..+..++++..++ ++.....++..+....++|.|++||.|+.+||+||++.+.|..+|+.+++++
T Consensus 165 P~~~~~~-~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI~~~~~I~~lr~~~~~~g 242 (249)
T PRK08640 165 PNVNEKS-DFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGIPLTTSIAAMNRETTKQS 242 (249)
T ss_pred CCCccCC-CccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 9997654 699999999999999998 4444556666666677999999999999999999999999999999998875
No 46
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=100.00 E-value=5.1e-46 Score=415.85 Aligned_cols=362 Identities=35% Similarity=0.532 Sum_probs=290.6
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCC-----CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMS-----KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~-----~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||++|+++|++|+||||....+|++.+++|++....+..+ +|+++.++.++++.+.+..++++++.+++++++
T Consensus 12 l~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (417)
T PF00890_consen 12 LAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPDLVRAFVENSPE 91 (417)
T ss_dssp HHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccchhhhhhhcccc
Confidence 589999999999999999998877888888888887764332 478999999999999999999999999999999
Q ss_pred HHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcc-eEEE-ecCC------cHHHHHHHHHHHHhcCCceEEeceEE
Q psy9575 76 VVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIA-RACA-VADR------TGHALLHTLYQRNLHAKTNFFIEWMA 147 (786)
Q Consensus 76 ~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~-r~~~-~~~~------~g~~i~~~L~~~~~~~Gv~i~~~~~v 147 (786)
.++||+++|++|....++.+....++++ ..+ |..+ ..+. +|..++..|.+.++++||+|++++++
T Consensus 92 ~~~~l~~~g~~~~~~~~g~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~ 164 (417)
T PF00890_consen 92 AIDWLEELGVPFRRDEDGPFAPTPFGGH-------SPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRV 164 (417)
T ss_dssp HHHHHHHTT--B-BGTTSSBCEEEETTE-------SSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEE
T ss_pred eehhhhhhcccccccccccccccccCCc-------cccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeecccee
Confidence 9999999999999877776666667766 444 5555 3343 78999999999999999999999999
Q ss_pred EeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc----------cCccCcccCCCchHHHHHHHHCCCCccC-
Q psy9575 148 IDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR----------IWAASTNAFINTGDGLGMAARAGLPLED- 216 (786)
Q Consensus 148 ~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~----------~~~~~~~~~~~tGdg~~~a~~aGa~l~~- 216 (786)
++|++++ ++|+|+++.+..+|+.+.|+|++|||||||+++ .+..+.+++.++|||+.||+++||.+.+
T Consensus 165 ~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~~aGa~~~~~ 243 (417)
T PF00890_consen 165 TDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMALRAGAALSND 243 (417)
T ss_dssp EEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHHHTTCCEEST
T ss_pred eeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhhccCccccCc
Confidence 9999996 999999999778899999999999999999997 4455677889999999999999999999
Q ss_pred -CCccccccccccC----CCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHH-HHHHhcCCCCCCCCe
Q psy9575 217 -MEFWQFHPTGVAG----AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMD-QEIKEGRGCGPNKDH 290 (786)
Q Consensus 217 -~e~~q~~p~~~~~----~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~-~~~~~g~g~~~~~~~ 290 (786)
|++++++|..+.+ .+.++.......++++||.+|+||++ |..+++.+.+++. .++..+.+ ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~vn~~G~Rf~~-------e~~~~~~~~~~~~~~~~~~~~~----~~~ 312 (417)
T PF00890_consen 244 PMEFIQWGPPSVPGIRDPSGILITEALPGPGGIWVNADGERFMN-------EDASYDDVAQAILQREIREPRG----DAY 312 (417)
T ss_dssp TTTCEEEEEEEETSTCCTTTSBHHTHHHHTT-EEEETTSSBTHG-------GGS-HHHHHHHHH-HHHHTTTS----ECB
T ss_pred cchhhccCCcccccccccccchhhhhhccceeEEEcCCCcCccc-------ccccccHHHHHHHHHhhhcccC----Ccc
Confidence 9999999987763 33333455667789999999999998 5566778888887 44444332 134
Q ss_pred EEEeCCC-CChhHHHhHchhHHHHHHhhcC------CCCCCCC-------eeeeecccccccCcccCCCCcccccCCCCC
Q psy9575 291 VMLDLRH-INSETIINRLPSILEIGNKFAN------VNALKEP-------IPVIPTIHYQMGGIPTNIYGQVIIPNNDNN 356 (786)
Q Consensus 291 v~ld~~~-~~~~~~~~~~~~~~~~~~~~~g------~d~~~~~-------i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~ 356 (786)
+|+++++ ++++.|.++++.+++.+..... +++.+.+ +++.|..|+|+|||+||+++||++.++
T Consensus 313 ~~~~~~~g~~~~~L~~tv~~yn~~~~~g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~vd~~~~vl~~~g--- 389 (417)
T PF00890_consen 313 VYLIFDGGIDPEGLAATVERYNEECEAGVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKVDEDAQVLDADG--- 389 (417)
T ss_dssp EEEEETTTSHHHHHHHHCHHHHHHHHHTSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEBETTSEEETTTC---
T ss_pred eEEeeccccChhhhhhhhhHHHHhhhcccccccccccccccCcccccccccccccccceeeEEeeeCcCcCccCCCC---
Confidence 8999988 9999999999999999887433 2233333 348899999999999999999999999
Q ss_pred cccCceeeecccCCccCCCCCccChhhh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSL 384 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l 384 (786)
++|||||||||++++++||++++||++|
T Consensus 390 ~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 390 QPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp EEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CEeCCEEEEEcccccccCCccCCcccCC
Confidence 9999999999999789999999999986
No 47
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.4e-44 Score=407.74 Aligned_cols=383 Identities=20% Similarity=0.252 Sum_probs=277.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||++|++.|++|+||||....+|+|..++|++..+.+.. + .||++.++.++.+...+..++++++.|++++++
T Consensus 28 ~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~~~~~~~li~~~~~~~~~ 107 (564)
T PRK12845 28 MAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVGGSAPAERSAAFLDNGSA 107 (564)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhCCCCCHHHHHHHHHhhHH
Confidence 57999999999999999999887888888877776554322 2 689999999999988888999999999999999
Q ss_pred HHHHHHH-cCCCccccCC-CcccccCCCCcc-------CCCCC----------------------------------CCc
Q psy9575 76 VVYELEH-FGMPFDRNKN-GTIYQRPFGGHS-------SNFGE----------------------------------KPI 112 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~-------~~~~~----------------------------------~~~ 112 (786)
+++||++ .|+.|..... ..++....|++. ..|.. ...
T Consensus 108 ~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (564)
T PRK12845 108 TVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIPMPVTGADYRWLNLMARV 187 (564)
T ss_pred HHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCccccccccccccHHHHHHHHHhhcC
Confidence 9999998 7888743211 111111111110 00000 000
Q ss_pred ceEEE------------------ecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEE
Q psy9575 113 ARACA------------------VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174 (786)
Q Consensus 113 ~r~~~------------------~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i 174 (786)
+|... .....|..++..|.+.+++.||+|++++++++|+.++ |+|+||++.+ +|+.+.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~--~g~~~~i 264 (564)
T PRK12845 188 PRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSLVRLTDDG-GRVTGAVVDH--RGREVTV 264 (564)
T ss_pred cchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCEEEecCEeeEEEecC-CEEEEEEEEE--CCcEEEE
Confidence 00000 0012477889999999999999999999999999875 9999998754 4545566
Q ss_pred Ee-CeEEEcCCCCCcc------Cc-------cCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCC----Ccccc
Q psy9575 175 ES-KITILATGGGGRI------WA-------ASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAG----VLITE 236 (786)
Q Consensus 175 ~A-kaVVlATGG~~~~------~~-------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~----~~~~~ 236 (786)
.| |+||||||||++| |. .+.+++.+||||+.||+++||.+.+|+++|+||+.....+ .++.+
T Consensus 265 ~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~ 344 (564)
T PRK12845 265 TARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQAWWFPAVAPLPGGAPAVMLAE 344 (564)
T ss_pred EcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCccceEecccccCCCCCcccchhh
Confidence 76 7999999999998 43 2566789999999999999999999999999997653221 22222
Q ss_pred ccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHH-----------------hcC----CCCCC--------
Q psy9575 237 GVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIK-----------------EGR----GCGPN-------- 287 (786)
Q Consensus 237 ~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~-----------------~g~----g~~~~-------- 287 (786)
. ...|+++||.+|+||++|.. ++..+.+++...-. ... ...|.
T Consensus 345 ~-~~~g~i~VN~~G~RF~nE~~-------~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~ 416 (564)
T PRK12845 345 R-SLPGSLIVDQTGRRFVNEAT-------DYMSFGQRVLERERAGDPVESMWIVFDQQYRNSYVFAAELFPRMPIPQAWY 416 (564)
T ss_pred h-ccCceEEECCCCCEecCCCC-------chhHHHHHHHhhhccCCCCceEEEEECchhhhhcccccccCCCCcccHhHh
Confidence 1 23578999999999999643 22223333322100 000 00000
Q ss_pred CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCC--CC-------------------------CC---ee
Q psy9575 288 KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNA--LK-------------------------EP---IP 328 (786)
Q Consensus 288 ~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~--~~-------------------------~~---i~ 328 (786)
..+.. .| .-+++++.|++++..||+.+.+ |.|+ .+ .| ++
T Consensus 417 ~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~--G~D~dFgr~~~~~~~~~gd~~~~~~~~l~pi~~gPfYA~~ 494 (564)
T PRK12845 417 DAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAAA--GVDSDFGRGRSAYDRYYGDPTVTPNPNLRPLDKGPFYAVK 494 (564)
T ss_pred hcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCCCCCCCCCchhhhhcCCCcCCCCcccCccccCCEEEEE
Confidence 00011 11 1146788889999999999876 4443 11 22 67
Q ss_pred eeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccC-hhhhHHHHHHHHHHHHHHHH
Q psy9575 329 VIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLG-TNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 329 v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlg-g~~l~~a~v~G~~Ag~~aa~ 400 (786)
+.|..++|+||++||+++||||.++ ++|||||||||++ ++++|.+|++ |+++++|+||||+||++||+
T Consensus 495 ~~p~~~~T~GGl~id~~~qVLd~dg---~pI~GLYAaG~~~-gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 495 MVLSDLGTCGGLRADERARVLREDG---SVIDGLYAIGNTA-ANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eccccceecCCeeECCCceEECCCC---CCCCCeeEeeeec-cccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 7888999999999999999999999 9999999999998 6899999997 99999999999999999874
No 48
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=8.1e-44 Score=404.42 Aligned_cols=380 Identities=22% Similarity=0.258 Sum_probs=274.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCC-----CC-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGN-----MS-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAP 74 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~-----~~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~ 74 (786)
|+||++|+++|++|+||||....+|+|.+++|.+.+..+. .+ .|+++.++.++++.+.+..|+++++.++++++
T Consensus 33 l~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~ 112 (492)
T PRK07121 33 ACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGPGVDEEKLRRYCEGSV 112 (492)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHccH
Confidence 5899999999999999999988777777665544432111 12 68899999988888888999999999999999
Q ss_pred HHHHHHHHcCCCccccCCCcccccC-------CCC-c-cCCCC--CCCcceEEEec---CC-cHHHHHHHHHHHHhcCCc
Q psy9575 75 KVVYELEHFGMPFDRNKNGTIYQRP-------FGG-H-SSNFG--EKPIARACAVA---DR-TGHALLHTLYQRNLHAKT 139 (786)
Q Consensus 75 ~~i~~l~~~Gv~~~~~~~g~~~~~~-------~gg-~-~~~~~--~~~~~r~~~~~---~~-~g~~i~~~L~~~~~~~Gv 139 (786)
+.++||+++|++|.....+.+...+ +.+ . ...++ ..+.+|.+... .. .|..++..|.+.+++.|+
T Consensus 113 ~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv 192 (492)
T PRK07121 113 EHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALGV 192 (492)
T ss_pred HHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchHHHHHHHHHHHHhCCC
Confidence 9999999999999754322211000 000 0 00000 00223333221 11 578899999999999999
Q ss_pred eEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEe-CeEEEcCCCCCcc------Cc------cCcccCCCchHHHHH
Q psy9575 140 NFFIEWMAIDLISDSEGDILGVVALEMETGNIMILES-KITILATGGGGRI------WA------ASTNAFINTGDGLGM 206 (786)
Q Consensus 140 ~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~A-kaVVlATGG~~~~------~~------~~~~~~~~tGdg~~~ 206 (786)
+|++++++++|+++++|+|+|+++.+ +++.+.|+| |+|||||||+++| |. .+.+++.+||||+.|
T Consensus 193 ~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~p~~~~~~~~~~~~~tGdG~~m 270 (492)
T PRK07121 193 QIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARYAPAYAGGLPLGTTGDDGSGIRL 270 (492)
T ss_pred EEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHhCCcccCCcCCCCCCCccHHHHH
Confidence 99999999999987547999998853 566678999 9999999999975 22 244567899999999
Q ss_pred HHHCCCCccCCCccccccccccCCCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHH---------
Q psy9575 207 AARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE--------- 277 (786)
Q Consensus 207 a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~--------- 277 (786)
|+++||.+.+|+++|+++....+. ...++++||.+|+||++|.. +++.+++++..+
T Consensus 271 a~~aGa~l~~~~~~~~~~~~~~~~--------~~~~~i~Vn~~G~RF~nE~~-------~~~~~~~~~~~~~~~~~~~i~ 335 (492)
T PRK07121 271 GQSAGGATAHMDQVFAWRFIYPPS--------ALLRGILVNARGQRFVNEDT-------YGARIGQFILEQPGGTAYLIV 335 (492)
T ss_pred HHHhCCccccCchhhhhCcccCCC--------CcCCeEEECCCCCEeecCCC-------cHHHHHHHHHhccCCcEEEEE
Confidence 999999999999998765432211 11357999999999999632 333344443321
Q ss_pred -------HHhcC--CCCCCCCe-EEEe-------CCCCChhHHHhHchhHHHHHHhhcCCCCCC----------CC---e
Q psy9575 278 -------IKEGR--GCGPNKDH-VMLD-------LRHINSETIINRLPSILEIGNKFANVNALK----------EP---I 327 (786)
Q Consensus 278 -------~~~g~--g~~~~~~~-v~ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~----------~~---i 327 (786)
..... ...+.... +-.| ..+++++.|++++..|++++.+....|+.+ .| +
T Consensus 336 D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~tv~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~ 415 (492)
T PRK07121 336 DEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQATVDAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAI 415 (492)
T ss_pred eHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCcccCCCcccccccccCCeEEE
Confidence 00000 00000000 0111 114677788888999999887632222222 22 4
Q ss_pred eeee----cccccccCcccCCC-CcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHH
Q psy9575 328 PVIP----TIHYQMGGIPTNIY-GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSL 401 (786)
Q Consensus 328 ~v~p----~~~~t~GGi~vd~~-~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~ 401 (786)
++.| ..|+|+||+.||++ +||||.|+ ++|||||||||++ +++||.+|++|+++++|++|||+||++|++.
T Consensus 416 ~~~~~~~~~~~~T~GGl~id~~~~qVld~~g---~pI~GLYAaG~~~-gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 416 DLSLGKAPTPGFTLGGLRVDEDTGEVLRADG---APIPGLYAAGRCA-SGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred EEecccCCcceeeccCeeECCCcceEECCCC---CCcCceEeccccc-ccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4554 89999999999999 99999999 9999999999998 7999999999999999999999999999864
No 49
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=9.7e-44 Score=403.90 Aligned_cols=385 Identities=18% Similarity=0.194 Sum_probs=278.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhccc-CeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQG-GISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAP 74 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~G-gi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~ 74 (786)
|+||++|++.|++|+||||....+|+|.+++| |+.++.+.. + .|+++..+.++......+.++++++.+++++.
T Consensus 19 l~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~ 98 (513)
T PRK12837 19 VAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGDRTPRDLQETYVRGGA 98 (513)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 58999999999999999999887777777766 465443321 1 46777776676666666789999999999999
Q ss_pred HHHHHHHH-cCCCccccCCCc----ccccCCCCccC----CCCCCC-------------cceEEEe-cC--CcHHHHHHH
Q psy9575 75 KVVYELEH-FGMPFDRNKNGT----IYQRPFGGHSS----NFGEKP-------------IARACAV-AD--RTGHALLHT 129 (786)
Q Consensus 75 ~~i~~l~~-~Gv~~~~~~~g~----~~~~~~gg~~~----~~~~~~-------------~~r~~~~-~~--~~g~~i~~~ 129 (786)
+.++||++ .|++|....... ......+++.. .++... ..+..+. .. ..|..++..
T Consensus 99 ~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~ 178 (513)
T PRK12837 99 PLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGAPPPDYLVGGRALIGR 178 (513)
T ss_pred HHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhccCCCCcccccHHHHHH
Confidence 99999988 599996532111 10001111000 000000 0000000 00 236778888
Q ss_pred HHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeC-eEEEcCCCCCcc------Cc------cCcc
Q psy9575 130 LYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK-ITILATGGGGRI------WA------ASTN 195 (786)
Q Consensus 130 L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~Ak-aVVlATGG~~~~------~~------~~~~ 195 (786)
|.+.+.+. ||+|++++++++|+.++ ++|+|+++.. +|+.+.|+|+ +|||||||+++| |. .+.+
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~ 255 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVED-GRVVGAVVER--GGERRRVRARRGVLLAAGGFEQNDDMRARYGVPGSARDTMG 255 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEE--CCcEEEEEeCceEEEeCCCccCCHHHHHHhccccccCCCCC
Confidence 88887764 99999999999999985 9999998753 5777789995 899999999987 53 3567
Q ss_pred cCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHH
Q psy9575 196 AFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMD 275 (786)
Q Consensus 196 ~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~ 275 (786)
++.+||||+.||+++||.+.+|+++|++|....+.+.. ....+..++++||.+|+||++ |..+++.+++++.
T Consensus 256 ~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~-~~~~~~~~~i~Vn~~GkRF~n-------E~~~~~~~~~a~~ 327 (513)
T PRK12837 256 GPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGRS-AFALWFTGGIFVDQHGERFVN-------ESAPYDRLGRAVI 327 (513)
T ss_pred CCCCCcHHHHHHHHcCCCccccccccccceeecCCCcc-eeccccCceEEECCCCCCccc-------CCCcHhHHHHHHH
Confidence 78999999999999999999999999999654433321 222345678999999999998 5667777888877
Q ss_pred HHHHhcCC------C--------------CC--------CCCeEEE--e-------CCCCChhHHHhHchhHHHHHHhhc
Q psy9575 276 QEIKEGRG------C--------------GP--------NKDHVML--D-------LRHINSETIINRLPSILEIGNKFA 318 (786)
Q Consensus 276 ~~~~~g~g------~--------------~~--------~~~~v~l--d-------~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
.+...+.. + .+ ...++++ | .-+++++.|++++..|++++....
T Consensus 328 ~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDTleELA~k~gid~~~L~~Tv~~yN~~~~~g~ 407 (513)
T PRK12837 328 AEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADTLEELAAKIGVPADALTATVARFNGFAAAGV 407 (513)
T ss_pred hhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC
Confidence 65543211 0 00 0001111 1 114677788888899999887632
Q ss_pred CCCCC---------------------CCC---eeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCC
Q psy9575 319 NVNAL---------------------KEP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVH 374 (786)
Q Consensus 319 g~d~~---------------------~~~---i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~ 374 (786)
..|+. +.| +++.|..++|+||++||+++||||.|+ ++|||||||||++ ++++
T Consensus 408 D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~~~qVl~~~g---~pIpGLYAaG~~~-gg~~ 483 (513)
T PRK12837 408 DEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDTAARVLDTDG---RPIPGLYAAGNTM-AAVS 483 (513)
T ss_pred CccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECCCceEECCCC---CEeCCceeccccc-cccc
Confidence 22222 123 677888999999999999999999999 9999999999998 6899
Q ss_pred CCCccC-hhhhHHHHHHHHHHHHHHHH
Q psy9575 375 GANRLG-TNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 375 Ga~rlg-g~~l~~a~v~G~~Ag~~aa~ 400 (786)
|.+|++ |+++++|++|||+||++|+.
T Consensus 484 g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 484 GTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred ccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 998886 89999999999999999864
No 50
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=370.55 Aligned_cols=225 Identities=35% Similarity=0.608 Sum_probs=201.8
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccccC
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELK 635 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~~ 635 (786)
+|+||+|+. +.+|||++|+|+++++ +|||+||.+|+.++|++|+|+.+||.|+||+|+|.|||+++|||.|++.++.
T Consensus 10 ~i~R~~~~~--~~~~~~~~~~v~~~~~-~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~~~~ 86 (244)
T PRK12385 10 EVLRYNPEV--DTEPHSQTYEVPYDET-TSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYT 86 (244)
T ss_pred EEEeeCCCC--CCCceeEEEEeeCCCC-CcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHHHcC
Confidence 489999964 5689999999999887 9999999999998899999999999999999999999999999999999877
Q ss_pred cceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCC-cccccCChhHHHhhhchhhCcccCcccCCCCCcccCC
Q psy9575 636 QPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPP-EKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714 (786)
Q Consensus 636 ~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~ 714 (786)
..++|+||++||++|||+||++.++++++.++||+..+...+ ..+..+++++.+.+.....||+||.|+++||++..+
T Consensus 87 ~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~- 165 (244)
T PRK12385 87 GGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLN- 165 (244)
T ss_pred CCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCCCcccccCCHHHHHHHHHHHhcCcCccccCcCcCcccC-
Confidence 789999999999999999999999999999999997654332 224567888888888899999999999999998765
Q ss_pred CCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHHh
Q psy9575 715 DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784 (786)
Q Consensus 715 ~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~ 784 (786)
.+|+||..+..++++..++++.....++..+....++|.|++||.|+++||++|++.++|..+|+.+.+.
T Consensus 166 ~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~I~~~~~I~~~r~~~~~~ 235 (244)
T PRK12385 166 PEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESAKD 235 (244)
T ss_pred CCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4599999999999999999988777777766666789999999999999999999999999999877765
No 51
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=366.47 Aligned_cols=221 Identities=24% Similarity=0.453 Sum_probs=195.0
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCccccccccccccc-
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNEL- 634 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~- 634 (786)
.|+|++|. .+||++|+|+++++ +|||++|++|+.++||+|+|+.+||.|+||+|+|.|||+++|||+|++.+.
T Consensus 8 ~I~R~~~~-----~~~~q~y~v~~~~~-~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~~~~ 81 (251)
T PRK12386 8 RVWRGDAS-----GGELQDYTVEVNEG-EVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMSTFD 81 (251)
T ss_pred EEEcCCCC-----CCceEEEEEeCCCC-CCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHHHhC
Confidence 37888864 35899999999886 999999999999899999999999999999999999999999999999864
Q ss_pred -CcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCCcccccCChhHHHhhhchhhCcccCcccCCCCCcccC
Q psy9575 635 -KQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWN 713 (786)
Q Consensus 635 -~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~ 713 (786)
.++++|||+++||++|||+||++.++++++.++||+..+...+ .+..+++++.+.++...+||+||.|+++||++..+
T Consensus 82 ~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~CI~CG~C~s~CPv~~~~ 160 (251)
T PRK12386 82 EDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQP-GEYRMQQVDVERSQEFRKCIECFLCQNVCHVVRDH 160 (251)
T ss_pred CCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCc-cccCCCHHHHHHHhchhhcccCCcccCcCCccccc
Confidence 3689999999999999999999999999999999997543333 45668889999999999999999999999999764
Q ss_pred ---CCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHH-HHHHHHHHHHHhc
Q psy9575 714 ---SDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNR-SINKIKELMIYRI 785 (786)
Q Consensus 714 ---~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~-~i~~lr~~~~~~~ 785 (786)
+.+|.||.++..+++++.|+|+.. .++.......++|.|++|++|+++||+||++.+ .|..+|+.+.+.+
T Consensus 161 ~~~~~~f~GP~~~~~a~r~~~D~Rd~~--~rl~~~~~~~gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~~~~~~~ 234 (251)
T PRK12386 161 EENKPAFAGPRFLMRIAELEMHPLDTA--DRRAEAQEEHGLGYCNITKCCTEVCPEHIKITDNALIPMKERVVDRK 234 (251)
T ss_pred CCCcccccCHHHHHHHHHhhcCccchH--HHHHHhhcccCcccCcCCCCcCCcCCCCcChhHHHHHHHHHHHHHhc
Confidence 356999999999999999999863 355555556789999999999999999999995 8999998887765
No 52
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=6e-45 Score=368.10 Aligned_cols=228 Identities=64% Similarity=1.195 Sum_probs=203.5
Q ss_pred CcccccCCCCcCCCCCcceeEEEEcC-CCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccc
Q psy9575 555 LTVKTVHPKKHHDIKPYMQKFLVNLS-SNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE 633 (786)
Q Consensus 555 ~~v~~~~p~~r~~~~~~~~~~~v~~~-~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~ 633 (786)
+.|+||+|+. +++|||+.|+|+++ ++ +|||++|++++.+++|+|+|+.+|+.|+||+|+|+|||+++|||+|++.+
T Consensus 2 ~~v~r~~~~~--~~~~~~~~~~v~~~~~~-~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~ 78 (232)
T PRK05950 2 FKIYRYNPDV--DANPRMQTYEVDVDECG-PMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISD 78 (232)
T ss_pred eEEEecCCCC--CCCceeEEEEeCCCCCC-CHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhH
Confidence 3589999975 67899999999998 76 99999999999768999999999999999999999999999999999998
Q ss_pred c-CcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCCcccccCChhHHHhhhchhhCcccCcccCCCCCccc
Q psy9575 634 L-KQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWW 712 (786)
Q Consensus 634 ~-~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~ 712 (786)
. ..+++|||+++||++|||++|++.++++++.++||+..+...+..+..+++++...++++.+||+||.|.++||++..
T Consensus 79 ~~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~ 158 (232)
T PRK05950 79 LKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPPARERLQSPEDREKLDGLYECILCACCSTSCPSFWW 158 (232)
T ss_pred cCCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCCchhccCCHHHHHHHHhHHhccccccccccCCcccc
Confidence 7 678999999999999999999999999999999999765443444556788888888889999999999999999877
Q ss_pred CCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHHhc
Q psy9575 713 NSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRI 785 (786)
Q Consensus 713 ~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~~ 785 (786)
++.+|+||+.+..+++++.++++.....++..+....++|.|++||.|+.+||++|++.++|..+|+.+++.+
T Consensus 159 ~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~gi~~~~~I~~lR~~~~~~~ 231 (232)
T PRK05950 159 NPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLERR 231 (232)
T ss_pred CCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCCCCHHHHHHHHHHHHHhhc
Confidence 6666999999999999999998776666666566666899999999999999999999999999999988764
No 53
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-43 Score=402.09 Aligned_cols=381 Identities=23% Similarity=0.319 Sum_probs=275.7
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHH---HHHhcCCCCcHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFD---TIKGSDYLGDQDAIEFMCKE 72 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d---~~~~~~~~~~~~~v~~~~~~ 72 (786)
|+||++|++.|++|+||||....+|.|..++|++..+.+.. + .|+.+.++.. +........++++++.++++
T Consensus 19 l~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (557)
T PRK12844 19 MCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQGPASSPERREAYLRA 98 (557)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhh
Confidence 57999999999999999999887787888888876543321 1 4566654333 33222233788999999999
Q ss_pred HHHHHHHHHHcCCCccccCC-CcccccCCCCccCCCCCCCcceEEEe---------------------------------
Q psy9575 73 APKVVYELEHFGMPFDRNKN-GTIYQRPFGGHSSNFGEKPIARACAV--------------------------------- 118 (786)
Q Consensus 73 ~~~~i~~l~~~Gv~~~~~~~-g~~~~~~~gg~~~~~~~~~~~r~~~~--------------------------------- 118 (786)
+++.++||+++|++|..... ..++....+++ +..|+++.
T Consensus 99 s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (557)
T PRK12844 99 GPAMVSFLEHQGMRFARCEGWSDYYPDLPGGE-------ARGRSLEAKPFDARKLGPWFDRLNPPMATPPGTVVMTDEYK 171 (557)
T ss_pred hHHHHHHHHhcCceeEeCCCCCCCCCCCCCCc-------CCCceecCCCCChhHhhHHHHhhcCcccccccccccHHHHH
Confidence 99999999999999975321 11222222333 11111110
Q ss_pred -------------------------------cCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcC
Q psy9575 119 -------------------------------ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEME 167 (786)
Q Consensus 119 -------------------------------~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~ 167 (786)
....|..++..|.+.+++.||+|++++++++|+.++ ++|+||++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~-- 248 (557)
T PRK12844 172 WLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVR-- 248 (557)
T ss_pred HHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEE--
Confidence 012478899999999999999999999999999986 9999998853
Q ss_pred CCcEEEEEe-CeEEEcCCCCCcc------Ccc-------CcccCCCchHHHHHHHHCCCCccCCCccccccccccCCC--
Q psy9575 168 TGNIMILES-KITILATGGGGRI------WAA-------STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAG-- 231 (786)
Q Consensus 168 ~g~~~~i~A-kaVVlATGG~~~~------~~~-------~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~-- 231 (786)
+|+.+.|.| ++|||||||+++| |.+ +.+++.+||||+.||+++||.+.+|+++|++|+.+.+.+
T Consensus 249 ~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~~~~p~~~~~~~~~ 328 (557)
T PRK12844 249 DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAWWVPGAPLPNGGP 328 (557)
T ss_pred CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccccccccccCccccCCCCc
Confidence 576778999 5899999999986 543 345678999999999999999999999999997654422
Q ss_pred --CccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHH------------HHhc--CC-CCC-------C
Q psy9575 232 --VLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE------------IKEG--RG-CGP-------N 287 (786)
Q Consensus 232 --~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~------------~~~g--~g-~~~-------~ 287 (786)
.+........++++||.+|+||++|..+ +..+.++++.+ +.+. .+ ..+ .
T Consensus 329 ~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~-------~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~ 401 (557)
T PRK12844 329 RPYMHNSERSKPGSIIVDRAGRRFVNEAGS-------YMEVGRAMYAQDAVPAWMIMDSRYRKRYLFGTIPPGPTPQEWL 401 (557)
T ss_pred ccccccccccCCcEEEECCCCCccccCCCc-------HHHHHHHHHhCCCceEEEEECchHHhhcCccccCCccChHHHh
Confidence 1111222346789999999999996432 22333332221 0000 00 000 0
Q ss_pred CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCC--C-------------------------CCC---ee
Q psy9575 288 KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNA--L-------------------------KEP---IP 328 (786)
Q Consensus 288 ~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~--~-------------------------~~~---i~ 328 (786)
..+.. .| ..+++++.+++++..|++.+.. |.|+ . +.| ++
T Consensus 402 ~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~~--G~D~dFgr~~~~~~~~~~~~~~~~~~~l~pi~~~PfYA~~ 479 (557)
T PRK12844 402 DSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAAT--GTDPDFHRGESAYDRYYGDPTNKPNPSLGPLDKPPFYAVR 479 (557)
T ss_pred hcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCCCccCCCcchhhccccCCcCCCCcccCcCCCCCeEEEE
Confidence 00111 12 1246788889999999999876 4342 1 122 67
Q ss_pred eeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccC-hhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 329 VIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLG-TNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 329 v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlg-g~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
+.|..++|+||+.||+++||||.++ ++|||||||||++ ++++|.+|++ |+++++|++|||+||++||+.++.
T Consensus 480 ~~~~~~~T~GGl~in~~~qVld~~g---~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~ 552 (557)
T PRK12844 480 MVPGDVGTSGGLLTDEHARVLREDG---SVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSA 552 (557)
T ss_pred EeccccEECCCccCCCCceEECCCC---CCccceeeccccc-cccccCCCCcCccchHHHHHHHHHHHHHHHhccCC
Confidence 7888899999999999999999998 9999999999998 7899999998 999999999999999999988654
No 54
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=385.06 Aligned_cols=224 Identities=38% Similarity=0.715 Sum_probs=201.7
Q ss_pred cccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCccccccccccccc-
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNEL- 634 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~- 634 (786)
.|+||+|+ .+|||++|+|+++++ +||||||++++++++|+|+|+.+|+.|+||+|+|+|||+++|||+|+|.++
T Consensus 6 ~i~R~~~~----~~p~~~~~~v~~~~~-~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~~~ 80 (329)
T PRK12577 6 KILRQKQN----SAPYVQTYTLEVEPG-NTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGSEL 80 (329)
T ss_pred EEEeeCCC----CCCeEEEEEEECCCC-ChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhhhh
Confidence 48999985 279999999999987 999999999999989999999999999999999999999999999999863
Q ss_pred ----------CcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCC-CCcccccCChhHHHhhhchhhCcccCcc
Q psy9575 635 ----------KQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNN-PPEKERLQSPSQRKILDGLYECILCGCC 703 (786)
Q Consensus 635 ----------~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~CI~Cg~C 703 (786)
..+++|+||++||++|||+||+++|+++++.++||+..+.. .++.+..++|++...+++...||+||.|
T Consensus 81 ~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~~~~~~~~Ci~CG~C 160 (329)
T PRK12577 81 ARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILCGAC 160 (329)
T ss_pred ccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCCCcccccCCHHHHHHHHHhhhCcccCcc
Confidence 26899999999999999999999999999999999986643 3455678999999999989999999999
Q ss_pred cCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhcc-CCCccccccccccchhhCCCCCChHHHHHHHHHHHH
Q psy9575 704 STACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLE-DPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMI 782 (786)
Q Consensus 704 ~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~ 782 (786)
+++||++..++ +|+||.++..+++++.++++.....++..+. ...++|.|++|+.|+.+||++|++.+.|..+|+.++
T Consensus 161 ~s~CP~~~~~~-~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I~~~~~I~~lr~~~~ 239 (329)
T PRK12577 161 YSECNAREVNP-EFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQEIL 239 (329)
T ss_pred cccCCCCCcCc-CcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCCchHHHHHHHHHHHH
Confidence 99999997764 6999999999999999999877777776543 566899999999999999999999999999999887
Q ss_pred Hhc
Q psy9575 783 YRI 785 (786)
Q Consensus 783 ~~~ 785 (786)
+++
T Consensus 240 ~~~ 242 (329)
T PRK12577 240 ARK 242 (329)
T ss_pred Hhc
Confidence 654
No 55
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=100.00 E-value=6.6e-43 Score=391.04 Aligned_cols=367 Identities=17% Similarity=0.165 Sum_probs=265.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCC--CCChhhhcccCeeeccCC---C--CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFP--TRSHTVAAQGGISASLGN---M--SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~--~~g~s~~a~Ggi~a~~~~---~--~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~ 73 (786)
|+||++|+++|++|+||||... .+|++. .++++...... . ..++++.++.++++.+.+.+|+++++.+++++
T Consensus 9 l~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~s 87 (432)
T TIGR02485 9 LCAAIEARRAGASVLLLEAAPRARRGGNAR-HGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLSRLGIGRG 87 (432)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCcCCcCcc-cccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHHHHHHhcc
Confidence 5899999999999999999875 233333 33332211110 0 14678889999999988999999999999999
Q ss_pred HHHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeec
Q psy9575 74 PKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISD 153 (786)
Q Consensus 74 ~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~ 153 (786)
++.++||+++|++|....++.+. ...+..+. ...|..++..|.+.+++.|++|++++++++|+.+
T Consensus 88 ~~~i~wl~~~Gv~f~~~~~g~~~--------------~~~~~~~~-~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~ 152 (432)
T TIGR02485 88 SRDLRWAFAHGVHLQPPAAGNLP--------------YSRRTAFL-RGGGKALTNALYSSAERLGVEIRYGIAVDRIPPE 152 (432)
T ss_pred hhHHHHHHhCCceeeecCCCCcc--------------ccCceeee-cCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEec
Confidence 99999999999999754332211 01122222 2467889999999999999999999999999987
Q ss_pred C-CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccC------c-c------CcccCCCchHHHHHHHHCCCCccCCCc
Q psy9575 154 S-EGDILGVVALEMETGNIMILESKITILATGGGGRIW------A-A------STNAFINTGDGLGMAARAGLPLEDMEF 219 (786)
Q Consensus 154 ~-~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~------~-~------~~~~~~~tGdg~~~a~~aGa~l~~~e~ 219 (786)
+ +++|+|+... ++ ...|+||+|||||||+++|. . + +.+++.+||||+.||+++||.+.++.
T Consensus 153 ~~~g~v~gv~~~---~~-~~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~~~~~- 227 (432)
T TIGR02485 153 AFDGAHDGPLTT---VG-THRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQAIGDP- 227 (432)
T ss_pred CCCCeEEEEEEc---CC-cEEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccccCCC-
Confidence 3 3889998762 22 24689999999999999863 1 1 22456899999999999999997665
Q ss_pred cccccccccCC-----CCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEe
Q psy9575 220 WQFHPTGVAGA-----GVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLD 294 (786)
Q Consensus 220 ~q~~p~~~~~~-----~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld 294 (786)
.++|++...+. +..........++++||.+|+||++|..+.. ...+..+..++..+ .+ . ..++.+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vn~~G~RF~~E~~~~~--~~~~~~~~~~~~~~--~~-~----~~~~i~D 298 (432)
T TIGR02485 228 TDGHVVAVDARAPFHDGGIVTRIDGMQLGIVVGRDGRRFADEGAIRG--PERYAVWGRQLASR--PG-Q----RAYILLD 298 (432)
T ss_pred CcceeEeecCCCCcCCCceeeeecccccEEEECCCCCEeeecCCccc--cchHHHHHHHHHhC--CC-C----eEEEEec
Confidence 34455433221 1111111223567999999999999643210 11111222222111 00 0 0012222
Q ss_pred -------------------------CCCCChhHHHhHchhHHHHHHhhcCCCC-CCCC---eeeeecccccccCcccCCC
Q psy9575 295 -------------------------LRHINSETIINRLPSILEIGNKFANVNA-LKEP---IPVIPTIHYQMGGIPTNIY 345 (786)
Q Consensus 295 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~d~-~~~~---i~v~p~~~~t~GGi~vd~~ 345 (786)
..+++++.+++++..|++++.. +..| .+.| +++.|..|+|+||++||++
T Consensus 299 ~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~--g~~~i~~~PfYa~~~~p~~~~T~GGl~id~~ 376 (432)
T TIGR02485 299 ADAAKRLPPMACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPRT--GARMILVVPFHAYPMIPGITFTRYGLVVDAT 376 (432)
T ss_pred chhhhhcccccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCCCCCCeEEEEeecccceeccceEECCC
Confidence 1146777888888999998876 4444 3445 8999999999999999999
Q ss_pred CcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 346 GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 346 ~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
+||++.|+ ++|||||||||+++|++||.+|++|+++++|++|||+||++|++.+
T Consensus 377 ~~Vl~~~g---~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 377 ARVRLNDA---VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ceEECCCC---CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 99999998 9999999999998668999999999999999999999999999874
No 56
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=2.1e-42 Score=391.30 Aligned_cols=380 Identities=19% Similarity=0.175 Sum_probs=273.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCC--CCChhhhcccCeeeccCCC-----CCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFP--TRSHTVAAQGGISASLGNM-----SKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEA 73 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~--~~g~s~~a~Ggi~a~~~~~-----~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~ 73 (786)
|+||++|+++|++|+||||... .+|+|.+++| +.+..+.. ..++++.++.++++.+.+..++++++.+++++
T Consensus 17 l~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 95 (466)
T PRK08274 17 LCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTDEALARLLIRES 95 (466)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874 4566666665 65544321 14678889999999988889999999999999
Q ss_pred HHHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeec
Q psy9575 74 PKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISD 153 (786)
Q Consensus 74 ~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~ 153 (786)
.+.++||.++|++|.....+.... ...+..+. ..|..++..|.+.+++.|++|++++++++|+.+
T Consensus 96 ~~~~~wl~~~Gv~~~~~~~~~~~~-------------~~~~~~~~--g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~ 160 (466)
T PRK08274 96 SDCRDWMRKHGVRFQPPLSGALHV-------------ARTNAFFW--GGGKALVNALYRSAERLGVEIRYDAPVTALELD 160 (466)
T ss_pred HHHHHHHHhCCceEeecCCCcccc-------------CCCCeeec--CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec
Confidence 999999999999997654433211 11111221 237889999999999999999999999999998
Q ss_pred CCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc------Cc-------cCcccCCCchHHHHHHHHCCCCccCCCcc
Q psy9575 154 SEGDILGVVALEMETGNIMILESKITILATGGGGRI------WA-------ASTNAFINTGDGLGMAARAGLPLEDMEFW 220 (786)
Q Consensus 154 ~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~------~~-------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 220 (786)
+ ++|+|+.+.+ .+++...|+||+|||||||++.+ |. .+.+++.++|||+.||+++||.+.+ ++.
T Consensus 161 ~-g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~~~~-~~~ 237 (466)
T PRK08274 161 D-GRFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLDAGADRIG-DPS 237 (466)
T ss_pred C-CeEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHHcCCCccC-Ccc
Confidence 5 8999998753 45666779999999999999875 11 1245678999999999999999876 567
Q ss_pred ccccccccCCC-----CccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHH-----------HHhcCCC
Q psy9575 221 QFHPTGVAGAG-----VLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE-----------IKEGRGC 284 (786)
Q Consensus 221 q~~p~~~~~~~-----~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~-----------~~~g~g~ 284 (786)
|+||+.+.... ..........++++||.+|+||++|..+.. ...+....+++..+ .......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vn~~G~RF~nE~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~ 315 (466)
T PRK08274 238 QCHAVAIDARAPLYDGGICTRIDCVPLGIVVNRDGERFYDEGEDFW--PKRYAIWGRLVAQQPGQIAYQIFDAKAIGRFM 315 (466)
T ss_pred ceeeEeecCCCCccCCcceeeecccceEEEEcCCCcEEEecCCccc--cchHHHHHHHHHcCCCceEEEEeCchhHhhcC
Confidence 88886543211 111112223567999999999999753211 00111122222111 0000000
Q ss_pred CCCCCeEEEe-------CCCCChhHHHhHchhHHHHHHhhc------------CCCCCC----CC--------eeeeecc
Q psy9575 285 GPNKDHVMLD-------LRHINSETIINRLPSILEIGNKFA------------NVNALK----EP--------IPVIPTI 333 (786)
Q Consensus 285 ~~~~~~v~ld-------~~~~~~~~~~~~~~~~~~~~~~~~------------g~d~~~----~~--------i~v~p~~ 333 (786)
.+....+-.| .-+++++.+++++..|++++.+.. +++|.+ .| +++.|..
T Consensus 316 ~~~~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~i~~~Pfya~~~~p~~ 395 (466)
T PRK08274 316 PPVFPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVRPGPFDPTVLDDCGTEGLTPPKSHWARPIDTPPFYAYPVRPGI 395 (466)
T ss_pred cccCCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhccccCCCcccccccccccCCCCcccccCccCCCCeEEEEeccce
Confidence 0000000001 014677888888999998887521 111111 12 5899999
Q ss_pred cccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 334 HYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 334 ~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
|+|+||++||+++||||.++ ++|||||||||+++|++||+||++|+++++|+|||++||++|+++++.
T Consensus 396 ~~t~GGl~~d~~~~vl~~~g---~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 396 TFTYLGLKVDEDARVRFADG---RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred eeecccEEECCCceEECCCC---CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 99999999999999999998 999999999999943399999999999999999999999999998754
No 57
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=6.8e-42 Score=392.47 Aligned_cols=396 Identities=20% Similarity=0.243 Sum_probs=277.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCC-----CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMS-----KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~-----~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||++|+++|++|+||||....+|+|.+++|++.+..+..+ +|+++.++.++.+.+.+..++++++.+++++++
T Consensus 24 l~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~~~~~d~~~v~~~~~~s~~ 103 (584)
T PRK12835 24 MTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQITGGLVSAARLRAYVDAAPQ 103 (584)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Confidence 579999999999999999998888889999999987655431 689999999999888889999999999999999
Q ss_pred HHHHHHHcC--CCccccCC-CcccccCCCCc----cCCC---C--------------CCCcc------------------
Q psy9575 76 VVYELEHFG--MPFDRNKN-GTIYQRPFGGH----SSNF---G--------------EKPIA------------------ 113 (786)
Q Consensus 76 ~i~~l~~~G--v~~~~~~~-g~~~~~~~gg~----~~~~---~--------------~~~~~------------------ 113 (786)
.++||+++| +.|..... ..++....+++ .... . ....+
T Consensus 104 ~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 183 (584)
T PRK12835 104 MMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAPKGIWFTPKDLRLFYMVRQ 183 (584)
T ss_pred HHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhcccccccccccccccHHHHHHHHhhcc
Confidence 999999976 44532211 00000011110 0000 0 00000
Q ss_pred -------------eEE----Ee--cCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEE
Q psy9575 114 -------------RAC----AV--ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174 (786)
Q Consensus 114 -------------r~~----~~--~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i 174 (786)
|.. .. ....|..++..|.+.+++.||+|++++++++|+++++|+|+|+++. .+|+.+.|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~--~~~~~~~i 261 (584)
T PRK12835 184 TWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVE--REGRTLRI 261 (584)
T ss_pred CcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEE--eCCcEEEE
Confidence 000 00 0123566777888888889999999999999999755899999884 36667789
Q ss_pred EeC-eEEEcCCCCCcc------Cc-------cCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCc---cccc
Q psy9575 175 ESK-ITILATGGGGRI------WA-------ASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVL---ITEG 237 (786)
Q Consensus 175 ~Ak-aVVlATGG~~~~------~~-------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~---~~~~ 237 (786)
+|+ +||||||||++| |. .+.+++.+||||+.||+++||.+.+|+..+++|....+.+.. +.+.
T Consensus 262 ~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (584)
T PRK12835 262 GARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDEAWWFPAICWPDGRMQFMLNER 341 (584)
T ss_pred EeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCccceecceeecCCCceeeeeecc
Confidence 996 899999999986 21 244567899999999999999999998777766544443321 1221
Q ss_pred cccCCcEEEcCCCCccccccCCccCCC-------C--------chhHHHHHHHHHHHhcCCCCC--C-------------
Q psy9575 238 VRGEGGILINSNGERFMERYAPILKDL-------A--------PRDFVSRAMDQEIKEGRGCGP--N------------- 287 (786)
Q Consensus 238 ~~~~g~~~vn~~G~rf~~~~~p~~~~~-------~--------~~~~~~~~i~~~~~~g~g~~~--~------------- 287 (786)
. ..++++||.+|+||++|..+.. .. . .+-++...+....... +..+ .
T Consensus 342 ~-~~~~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 418 (584)
T PRK12835 342 M-MPAQFIVNGAGKRFINEAAPYM-DFVHAMIAGQRSGVGHIPCWLVTDIRSFSRYVFG-GHLPIPKIPFAPVPTGRKFP 418 (584)
T ss_pred C-CCceEEECCCCCcCcCCcCchh-hHHHHHHhhccCCCCCcceEEEEChHHHhhcCcc-cccCCCccccccccccccCc
Confidence 1 2357999999999999754321 00 0 0001111111100000 0000 0
Q ss_pred ----CCe-E-EEe-------CCCCChhHHHhHchhHHHHHHhhcCCCCCC------------------------CC---e
Q psy9575 288 ----KDH-V-MLD-------LRHINSETIINRLPSILEIGNKFANVNALK------------------------EP---I 327 (786)
Q Consensus 288 ----~~~-v-~ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~------------------------~~---i 327 (786)
..+ + -.| ..+++++.|++++..|++++.+....|+.+ .| +
T Consensus 419 ~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~~G~D~dFgr~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~ 498 (584)
T PRK12835 419 QAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLARKGHDDDFNRGDSAYDNYYGDPTLPNPNLDPLGKPPYYAF 498 (584)
T ss_pred HHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcCcccCCCCcchhcccCCCCCCCccccccccCCeEEE
Confidence 000 1 111 114678888899999999987632222222 22 6
Q ss_pred eeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccC-hhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 328 PVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLG-TNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 328 ~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlg-g~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
++.|..+.|+||+.||+++||||.++ ++|||||||||++ |+++|.+|++ |+++++|++|||+||++|++.++..
T Consensus 499 ~~~p~~~~T~GGl~in~~~qVLd~~g---~pIpGLYAAGe~~-Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~ 573 (584)
T PRK12835 499 RIELGDLGTSGGLRTDEHARVLREDD---SVIPGLYAVGNTS-ASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAA 573 (584)
T ss_pred EecccccccCcCccCCCCceEECCCC---CCccceeeeeecc-cccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhc
Confidence 77788999999999999999999999 9999999999998 6899999988 8899999999999999999886543
No 58
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-42 Score=398.13 Aligned_cols=387 Identities=20% Similarity=0.240 Sum_probs=272.2
Q ss_pred ChHhhhcHhCCCCEEEEEecC--CCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHH-----HHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVF--PTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQD-----AIEF 68 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~--~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~-----~v~~ 68 (786)
|+||++|+++|++|+||||.. ..+|+|.+++|++.+..+.. + +||++.++.++++.+.+..+++ +++.
T Consensus 17 l~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~ 96 (549)
T PRK12834 17 LVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGFDRPEDHWPRQWAEA 96 (549)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCCCCccccchHHHHHH
Confidence 589999999999999999998 56788888999988766542 1 6899999999999988777665 3677
Q ss_pred HHHH-HHHHHHHHHHcCCCccccC----CCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc---C-Cc
Q psy9575 69 MCKE-APKVVYELEHFGMPFDRNK----NGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH---A-KT 139 (786)
Q Consensus 69 ~~~~-~~~~i~~l~~~Gv~~~~~~----~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~---~-Gv 139 (786)
++++ +++.++||+++|++|.... ++.. ..+++ ..+.+| .|..+.+|..++..|.+.+++ . ||
T Consensus 97 ~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~-----~~~~~r-~~~~~~~G~~~~~~l~~~~~~~~~~~gv 167 (549)
T PRK12834 97 YVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGH-----GNSVPR-FHITWGTGPGVVEPFERRVREAAARGLV 167 (549)
T ss_pred HHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCc-----ccccCc-eecCCCCcHHHHHHHHHHHHHHHHhCCc
Confidence 7775 7999999999999997532 1211 11211 014556 455556788899998887752 3 69
Q ss_pred eEEeceEEEeeeecCCCCEEEEEEEEcCC-------------CcEEEEEeCeEEEcCCCCCccC------cc--------
Q psy9575 140 NFFIEWMAIDLISDSEGDILGVVALEMET-------------GNIMILESKITILATGGGGRIW------AA-------- 192 (786)
Q Consensus 140 ~i~~~~~v~~L~~~~~g~v~G~~~~~~~~-------------g~~~~i~AkaVVlATGG~~~~~------~~-------- 192 (786)
+|++++++++|++++ |+|+||++.+..+ ++.+.|+||+||||||||++|+ .+
T Consensus 168 ~i~~~t~~~~Li~~~-g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~~~~~p~~~~~~~~ 246 (549)
T PRK12834 168 RFRFRHRVDELVVTD-GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELVRRNWPERLGTPPK 246 (549)
T ss_pred eEEecCEeeEEEEeC-CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHHHHhCccccCCCcc
Confidence 999999999999985 9999999753221 2356789999999999999883 11
Q ss_pred ---CcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCc----cccccccCCcEEEcCCCCccccccCCccCCCC
Q psy9575 193 ---STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVL----ITEGVRGEGGILINSNGERFMERYAPILKDLA 265 (786)
Q Consensus 193 ---~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~----~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~ 265 (786)
++++..+||||+.||+++||.+.+|+.++.+|..+...... ......+.++++||.+|+||++|..+......
T Consensus 247 ~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vn~~GkRF~nE~~~~~~~~~ 326 (549)
T PRK12834 247 DMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWFDATGNRLPAPLFPGFDTLG 326 (549)
T ss_pred ccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCCCcCccccceeccCCCEEEECCCCCCCCCCccccccHHH
Confidence 34455689999999999999999999877665433211100 00011234679999999999997432110000
Q ss_pred ------------chhHHHHHHHHHHH---------------------h-cCCC-C------CCCC-eEEEe-CC------
Q psy9575 266 ------------PRDFVSRAMDQEIK---------------------E-GRGC-G------PNKD-HVMLD-LR------ 296 (786)
Q Consensus 266 ------------~~~~~~~~i~~~~~---------------------~-g~g~-~------~~~~-~v~ld-~~------ 296 (786)
.+-++...+..... . .... . ..+. .+-.| ++
T Consensus 327 ~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~kAdTleELA~k~ 406 (549)
T PRK12834 327 TLKHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGAPGPVEAFKDHGEDFVVADDLEELVAGM 406 (549)
T ss_pred HHHHHhccCCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCCCccHHHHHhcCCcEEEeCCHHHHHHHh
Confidence 00111111111000 0 0000 0 0000 11222 11
Q ss_pred C-------CChhHHHhHchhHHHHHHhhcCCCC----------------------------CCCC---eeeeeccccccc
Q psy9575 297 H-------INSETIINRLPSILEIGNKFANVNA----------------------------LKEP---IPVIPTIHYQMG 338 (786)
Q Consensus 297 ~-------~~~~~~~~~~~~~~~~~~~~~g~d~----------------------------~~~~---i~v~p~~~~t~G 338 (786)
+ ++++.+++++..+++.+....|.|+ .+.| +++.|..+.|+|
T Consensus 407 g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gPfYA~~~~~~~~~T~G 486 (549)
T PRK12834 407 NALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPHRLLDPAAGPLIAVRLHILTRKTLG 486 (549)
T ss_pred cccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhcccCCccccCCCCCCEEEEEEeccccEEcc
Confidence 2 6678888888888776654323332 2344 788899999999
Q ss_pred CcccCCCCcccccCCCCCcccCceeeecccCC---ccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 339 GIPTNIYGQVIIPNNDNNKIVNGLYAIGECAC---VSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 339 Gi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~---gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
|++||+++||||.|+ ++|||||||||+++ ++++|.++++|+++++|++|||+||++||+
T Consensus 487 Gl~id~~~qVld~dg---~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 487 GLETDLDSRVLGADG---TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CEeECCCCceeCCCC---CEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999 99999999999984 378898899999999999999999999875
No 59
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=100.00 E-value=6.9e-44 Score=357.73 Aligned_cols=218 Identities=52% Similarity=0.963 Sum_probs=192.6
Q ss_pred ccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccc-cC
Q psy9575 557 VKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE-LK 635 (786)
Q Consensus 557 v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~-~~ 635 (786)
|+||+|+. +.+|||++|+|+++++ +|||+||++++.+++|+|+|+.+|+.|+||+|+|+|||++++||+|++.+ |+
T Consensus 1 i~R~~~~~--~~~~~~~~~~v~~~~~-~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~ 77 (220)
T TIGR00384 1 VLRFNPDV--DEKPHLQSYEVPADEG-MTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ 77 (220)
T ss_pred CcCcCCCC--CCCceeEEEEEeCCCC-CcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC
Confidence 57999874 5689999999999887 99999999999878999999999999999999999999999999999999 88
Q ss_pred cceEECCCCCCCceeeeeecchHhHHhcccccceeecCCC-CCcccccCChhHHHhhhchhhCcccCcccCCCCCcccCC
Q psy9575 636 QPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNN-PPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714 (786)
Q Consensus 636 ~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~ 714 (786)
.+++|||+++||++|||++|++.++++++.++||+..... .+.....+++++...+++..+||+||+|+++||++....
T Consensus 78 ~~~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~~ 157 (220)
T TIGR00384 78 PVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNP 157 (220)
T ss_pred CcEEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhccccccccccCCCCccCC
Confidence 8899999999999999999999999999999999976542 223345677888888888999999999999999986654
Q ss_pred CCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHH
Q psy9575 715 DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIK 778 (786)
Q Consensus 715 ~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr 778 (786)
+|.||.++..+++++.++++.....++.......++|.|++||+|+++||++|++.++|.++|
T Consensus 158 -~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~I~~~~~I~~lR 220 (220)
T TIGR00384 158 -EFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220 (220)
T ss_pred -CCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCCCCHHHHHHHhC
Confidence 599999999999999999876666665555445688999999999999999999999999876
No 60
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=6.9e-43 Score=359.25 Aligned_cols=221 Identities=33% Similarity=0.618 Sum_probs=193.9
Q ss_pred CcccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCccccccccccccc
Q psy9575 555 LTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNEL 634 (786)
Q Consensus 555 ~~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~ 634 (786)
++|+||+|+. .|||++|+|+++++ +|||++|++++++++|+|+|+.+|+.|+||+|+|+|||++++||+|++.+.
T Consensus 11 ~~i~R~~~~~----~~~~~~~~v~~~~~-~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t~v~~~ 85 (279)
T PRK12576 11 FKVKRYDPEK----GSWWQEYKVKVDRF-TQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTLVLDV 85 (279)
T ss_pred EEEEecCCCC----CCeEEEEEEecCCC-CHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccCcHHHh
Confidence 3489999862 39999999999987 999999999999889999999999999999999999999999999999874
Q ss_pred ----CcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCC--CcccccCChhHHHhhhchhhCcccCcccCCCC
Q psy9575 635 ----KQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNP--PEKERLQSPSQRKILDGLYECILCGCCSTACP 708 (786)
Q Consensus 635 ----~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP 708 (786)
..+++||||++||++|||++|++.++++++.++||+.++... +..+..+++++.+.+.+...||+||+|+++||
T Consensus 86 ~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~~~CP 165 (279)
T PRK12576 86 AKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACP 165 (279)
T ss_pred hcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcccccCC
Confidence 468999999999999999999999999999999999865432 22345678888888888999999999999999
Q ss_pred CcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHH
Q psy9575 709 SFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783 (786)
Q Consensus 709 ~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~ 783 (786)
++..+ .+|+||.++..+++++.++++.....++... ..++|.|++||.|+.+||++|++.++|..+|+.+..
T Consensus 166 ~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~--~~~i~~C~~Cg~C~~~CP~~I~~~~~I~~lR~~~~~ 237 (279)
T PRK12576 166 VVAID-PEFLGPAAHAKGYRFLADPRDTITEERMKIL--IDSSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFTRV 237 (279)
T ss_pred Ccccc-CCcCCHHHHHHHHHHhcCccccchHHHHHHH--cCcCCcccCcccchhhCCCCCcHHHHHHHHHHHHHh
Confidence 98765 4699999999999999999887666666443 347899999999999999999999999999987543
No 61
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=370.83 Aligned_cols=387 Identities=20% Similarity=0.214 Sum_probs=265.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||+.|+++|++|+||||....+|.+.+++|++..+.+.. + .|+.+..+.++........++++++.+++++++
T Consensus 21 ~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e 100 (572)
T PRK12839 21 LSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGENYDADKVDALLDGAPE 100 (572)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCCCCCHHHHHHHHHhCHH
Confidence 57999999999999999999887788888887776654432 2 577887777777777788999999999999999
Q ss_pred HHHHHHH-cCCCccccCC-CcccccCCCCcc-------CCC-----CC-----------------CC-------------
Q psy9575 76 VVYELEH-FGMPFDRNKN-GTIYQRPFGGHS-------SNF-----GE-----------------KP------------- 111 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~~-g~~~~~~~gg~~-------~~~-----~~-----------------~~------------- 111 (786)
+++||++ .|++|..... ..++....++.. ..| +. ..
T Consensus 101 ~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 180 (572)
T PRK12839 101 MVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFLGMGIMAGPDLQAFLHA 180 (572)
T ss_pred HHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCcccccccccccccHHHHHHHHHh
Confidence 9999999 6777742110 000000011100 000 00 00
Q ss_pred --cc-----------eE-----EEec---CCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCc
Q psy9575 112 --IA-----------RA-----CAVA---DRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGN 170 (786)
Q Consensus 112 --~~-----------r~-----~~~~---~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~ 170 (786)
.+ |. .+.. ...|..++..|.+.+++.||+|+.++.+++|+.+++|+|+||++.+ .+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~-~~g~ 259 (572)
T PRK12839 181 TQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQG-PDGA 259 (572)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEe-CCCc
Confidence 00 00 0000 0136788899999999999999999999999986448999998865 5666
Q ss_pred EEEEEeCeEEEcCCCCCcc-------Ccc--------CcccCCCchHHHHHHHHCCCCccCCC--ccccccccccCC---
Q psy9575 171 IMILESKITILATGGGGRI-------WAA--------STNAFINTGDGLGMAARAGLPLEDME--FWQFHPTGVAGA--- 230 (786)
Q Consensus 171 ~~~i~AkaVVlATGG~~~~-------~~~--------~~~~~~~tGdg~~~a~~aGa~l~~~e--~~q~~p~~~~~~--- 230 (786)
...+.+|+||||||||+++ +.. +.+++.+||||+.||+++||.+.++. ..+++|..+.+.
T Consensus 260 ~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l~~~~~~~~~~~~~~~~~~~~~ 339 (572)
T PRK12839 260 VTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARLDRDLASPAAWCPVSLVPYRNG 339 (572)
T ss_pred EEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCccccCCcccccccceecccCCCC
Confidence 5555569999999999984 221 23567899999999999999998743 344555443221
Q ss_pred --CCccccccc-cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhc----------------C--CC-CC--
Q psy9575 231 --GVLITEGVR-GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEG----------------R--GC-GP-- 286 (786)
Q Consensus 231 --~~~~~~~~~-~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g----------------~--g~-~~-- 286 (786)
+.+.....+ ..+.++||.+|+||++|..+. ..+..++..+...+ . +. .+
T Consensus 340 ~~~~~~~~~~~~~~g~i~VN~~GkRF~nE~~~~-------~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~ 412 (572)
T PRK12839 340 KVGTFPHIMDRGKPGSIGVLATGKRFVNEANGY-------YDYTLAMVKAAPEGEPVCSWLIADSRFVRKYPLGMAKPLP 412 (572)
T ss_pred ccccccccccccCCceEEECCCCCcCCCCCCcc-------ccHHHHHHHhccCCCCccEEEEeChHHHhhccccccCCCC
Confidence 111000111 356899999999999974322 11222221111000 0 00 00
Q ss_pred --C----CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCC--CC-------------------------
Q psy9575 287 --N----KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNA--LK------------------------- 324 (786)
Q Consensus 287 --~----~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~--~~------------------------- 324 (786)
. ..+.. .| .-+++++.|++++..+++++.+ |.|+ .+
T Consensus 413 ~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~--G~D~dFgr~~~~~~~~~gd~~~~~~~~l~pi~~ 490 (572)
T PRK12839 413 VPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENARD--GEDPEFGRGTTPFNRGSGDPDNGPNPSLAPLEK 490 (572)
T ss_pred CccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhhc--CCCcCcCCCcchhhcccCCcccCCCcccccCCC
Confidence 0 00111 11 1256788899999999999876 4332 22
Q ss_pred CC---eeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCc-cChhhhHHHHHHHHHHHHHHHH
Q psy9575 325 EP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANR-LGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 325 ~~---i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~r-lgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.| +++.|..++|+||+.||+++||||.++ ++|||||||||++ ++++|.+| ++|+++++|++|||+||++||+
T Consensus 491 gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg---~pIpGLYAAG~~~-gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 491 GPFYAVKVVPGSFGTFAGLVADGKSRVLRDDD---TPIDGLYAAGNDQ-ASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CCeEEEEEeccccccCCCccCCCCceEECCCC---CCcCCceeccccc-cccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 23 678889999999999999999999999 9999999999998 68887665 6799999999999999999985
Q ss_pred H
Q psy9575 401 L 401 (786)
Q Consensus 401 ~ 401 (786)
.
T Consensus 567 ~ 567 (572)
T PRK12839 567 S 567 (572)
T ss_pred c
Confidence 3
No 62
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=1.4e-41 Score=341.67 Aligned_cols=219 Identities=22% Similarity=0.452 Sum_probs=172.5
Q ss_pred cccccCCCCcCCCCCcceeEEEE-cCCCChhHHHHHHHchhcc----CCCcccccCCCCCcccceEEEeCCcc------c
Q psy9575 556 TVKTVHPKKHHDIKPYMQKFLVN-LSSNDKMLLDALHRIKYDI----DDSLTLRRSCREGVCGSDAMNINGKN------G 624 (786)
Q Consensus 556 ~v~~~~p~~r~~~~~~~~~~~v~-~~~~~~tiL~al~~~~~~~----~~~l~~~~~Cr~g~Cg~C~V~vnG~~------~ 624 (786)
.|+||++. +.+||||+|+|+ ++++ +|||+||.+|+.++ +++|+|+.+||.|+||||+|+|||++ +
T Consensus 6 ~i~R~~~~---~~~~~~q~y~v~~~~~~-~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~~~ 81 (250)
T PRK07570 6 KIWRQKGP---DDKGKFETYEVDDISPD-MSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDRGT 81 (250)
T ss_pred EEEecCCC---CCCceeEEEEecCCCCC-CcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCccc
Confidence 48899853 458999999999 7776 99999999998653 46799999999999999999999999 8
Q ss_pred ccccccccccC--cceEECCCC--CCCceeeeeecchHhHHhcccccceeecCC-CCCc-ccccCChhHHHhhhchhhCc
Q psy9575 625 LACITNLNELK--QPIIIRPLP--GLPVIRDLVVDMTLFFKQFNSIKPFLITNN-NPPE-KERLQSPSQRKILDGLYECI 698 (786)
Q Consensus 625 laC~t~v~~~~--~~~~i~p~~--~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~CI 698 (786)
|||+|.+.+.. ..++|+||+ +||++|||+||++.| .+++.++||+.++. ..++ .+..+++++.+.+.+...||
T Consensus 82 LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI 160 (250)
T PRK07570 82 TTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAACI 160 (250)
T ss_pred chhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCccccC
Confidence 99999998753 689999998 999999999999996 88888999998653 2222 35678899998888899999
Q ss_pred ccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhh---HHHhhhccCCCccccccccccchhhCCCCCChHHHHH
Q psy9575 699 LCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEAT---NFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSIN 775 (786)
Q Consensus 699 ~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~ 775 (786)
.||.|+++||++. ...|+||.. ... ++....++... ..++... +..++|.|++||.|+++||++|++. .|.
T Consensus 161 ~CG~C~saCP~~~--~~~f~Gp~~-~~~-~l~p~~~~~r~~~~~~~~~~~-~~~gv~~C~~Cg~Cs~VCPk~I~~~-~I~ 234 (250)
T PRK07570 161 GCGACVAACPNGS--AMLFTGAKV-SHL-ALLPQGQPERARRVRAMVAQM-DEEGFGNCTNTGECEAVCPKGISLE-NIA 234 (250)
T ss_pred CCcccccccCCcc--cccccchhh-hhh-hhCcccchhHHHHHHHHHHHH-hccCcccCcccCccccccCCCCCHH-HHH
Confidence 9999999999985 346999874 332 32221111111 1122222 2367899999999999999999985 777
Q ss_pred HHHHHHHHhc
Q psy9575 776 KIKELMIYRI 785 (786)
Q Consensus 776 ~lr~~~~~~~ 785 (786)
.+++.++..+
T Consensus 235 ~l~r~~~~~~ 244 (250)
T PRK07570 235 RMNREYLRAS 244 (250)
T ss_pred HHHHHHHHHH
Confidence 7776666543
No 63
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-39 Score=367.33 Aligned_cols=388 Identities=19% Similarity=0.204 Sum_probs=269.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||+.|+++|++|+||||....+|.+..++|++....+.. + .|+++.++..+.....+..|+++++.+++++++
T Consensus 29 ~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~~~~~~d~~lv~~~~~~s~e 108 (578)
T PRK12843 29 MSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALVGDRSPEELRDAFLASGPR 108 (578)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHhhCCCCcHHHHHHHHhccHH
Confidence 47899999999999999999888888888888887654322 2 688888877777766666899999999999999
Q ss_pred HHHHHHH-cCCCccccC-CCcccccCCCCcc-----------------------------CCCCCCCcceE---------
Q psy9575 76 VVYELEH-FGMPFDRNK-NGTIYQRPFGGHS-----------------------------SNFGEKPIARA--------- 115 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~-~g~~~~~~~gg~~-----------------------------~~~~~~~~~r~--------- 115 (786)
+++||++ .|+.|.... ...+.....++.. ..++..+..|.
T Consensus 109 ~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 188 (578)
T PRK12843 109 AIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFTVLGGMMVDRTDVGHLLALT 188 (578)
T ss_pred HHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccccccccccccccHHHHHHHHHhh
Confidence 9999997 799884320 0000000000000 00000011110
Q ss_pred ---------------------EEec-C--CcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcE
Q psy9575 116 ---------------------CAVA-D--RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNI 171 (786)
Q Consensus 116 ---------------------~~~~-~--~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~ 171 (786)
.+.. . ..|..++..|.+.+++.||++++++.+++|+.++ ++|+||.+.+ +|+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~--~g~~ 265 (578)
T PRK12843 189 KSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQ--GGVR 265 (578)
T ss_pred cChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEec--CCeE
Confidence 0000 0 1477899999999999999999999999999875 9999998753 5666
Q ss_pred EEEEe-CeEEEcCCCCCcc------------CccCcccCCCchHHHHHHHHCCCCccCCCcc--ccccccccC--CC--C
Q psy9575 172 MILES-KITILATGGGGRI------------WAASTNAFINTGDGLGMAARAGLPLEDMEFW--QFHPTGVAG--AG--V 232 (786)
Q Consensus 172 ~~i~A-kaVVlATGG~~~~------------~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~--q~~p~~~~~--~~--~ 232 (786)
+.|.| ++|||||||+++| +..++++..+||||+.||+++||.+.+|... .+.|....+ .+ .
T Consensus 266 ~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (578)
T PRK12843 266 RRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGRGLLSNAFWAPVSVRRRADGSTA 345 (578)
T ss_pred EEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCccccCcccceecccccccCCCCccc
Confidence 67887 7999999999997 3446677899999999999999999776421 123332211 11 0
Q ss_pred ccccc--cc-cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHH----------------HHh--cCCC-CCC---
Q psy9575 233 LITEG--VR-GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE----------------IKE--GRGC-GPN--- 287 (786)
Q Consensus 233 ~~~~~--~~-~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~----------------~~~--g~g~-~~~--- 287 (786)
..... .+ ..++++||.+|+||++|.. +++.+..++... ..+ +.+. .+.
T Consensus 346 ~~~~~~~~~~~~g~I~VN~~GkRF~nE~~-------~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~ 418 (578)
T PRK12843 346 VFPHFYLDRGKPGTIAVNQQGRRFVNEST-------SYHLFGTAMFAAGKTSPGIPAYLITDAEFLRKYGLGMVRPGGRG 418 (578)
T ss_pred cccchhhhccCCCeEEECCCCCccccCCc-------cHHHHHHHHHhhccCCCCccEEEEEChHHHhhcCcccCCCCCcC
Confidence 00000 11 2468999999999999643 333333332221 000 0000 000
Q ss_pred -----CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCC--C-------------------------CCC
Q psy9575 288 -----KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNA--L-------------------------KEP 326 (786)
Q Consensus 288 -----~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~--~-------------------------~~~ 326 (786)
..... .| ..+++++.+++++..+++.+.+ |.|+ . +.|
T Consensus 419 ~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~--G~D~dFgr~~~~~~~~~~~~~~~~~~~l~pi~~~P 496 (578)
T PRK12843 419 LAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYART--GIDPDFGRGATAYQRMNGDAMIGPNPNLGPIETAP 496 (578)
T ss_pred cHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCCcccCCCcchhhcccCCcccCCCCcccccCCCC
Confidence 00111 12 1256788889999999999876 4442 1 122
Q ss_pred ---eeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccC-hhhhHHHHHHHHHHHHHHHHHh
Q psy9575 327 ---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLG-TNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 327 ---i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlg-g~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
+++.|..++|+||++||+++||||.|+ ++|||||||||++ +|++|.+|++ |+++++|+||||+||++||+++
T Consensus 497 fYA~~~~p~~~~T~GGl~in~~~qVld~dg---~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 497 FYAVRLYPGDIGAATGLVTDASARVLNADG---QPISGLYACGNDM-ASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred eEEEEecCCccccCCCccCCCCceEECCCC---CCcCCceeccccc-cccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 677888999999999999999999999 9999999999999 6899988875 8899999999999999999887
Q ss_pred hh
Q psy9575 403 LK 404 (786)
Q Consensus 403 ~~ 404 (786)
+.
T Consensus 573 ~~ 574 (578)
T PRK12843 573 LA 574 (578)
T ss_pred hc
Confidence 54
No 64
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.4e-39 Score=368.61 Aligned_cols=384 Identities=22% Similarity=0.288 Sum_probs=267.3
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||+.|+++|++|+||||....+|++..++|++....+.. + .|+.+.+..++........++++++.+++++++
T Consensus 20 ~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (557)
T PRK07843 20 MVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVGDVVPPERIDAYLDRGPE 99 (557)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhhhhcCHHhhhhHHhcChH
Confidence 57999999999999999999887778888877776543321 1 456666666666666666888999999999999
Q ss_pred HHHHHHH-cCCCccccC-CCcccccCCCC----ccC---C----------------CCCCC------------------c
Q psy9575 76 VVYELEH-FGMPFDRNK-NGTIYQRPFGG----HSS---N----------------FGEKP------------------I 112 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~-~g~~~~~~~gg----~~~---~----------------~~~~~------------------~ 112 (786)
.++|+.+ .++.+.... .+.+.....++ +.. . +...+ .
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~ 179 (557)
T PRK07843 100 MLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNMVVMQQDYVWLNLLKRH 179 (557)
T ss_pred HHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhccccccccccccccHHHHHHHHhhhcC
Confidence 9999987 355443211 11111001110 000 0 00000 0
Q ss_pred ceEE-----------------EecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEE
Q psy9575 113 ARAC-----------------AVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175 (786)
Q Consensus 113 ~r~~-----------------~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~ 175 (786)
+|.. ......|..+...|.+.+++.||++++++.+++|+.++ ++|+|+++.. +++.+.|+
T Consensus 180 ~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~--~g~~~~i~ 256 (557)
T PRK07843 180 PRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAE--SGEPQLIR 256 (557)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEe--CCcEEEEE
Confidence 0000 00001256678888888888999999999999999985 8999998753 56677899
Q ss_pred eC-eEEEcCCCCCcc------Cc-------cCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCC--Cccccccc
Q psy9575 176 SK-ITILATGGGGRI------WA-------ASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAG--VLITEGVR 239 (786)
Q Consensus 176 Ak-aVVlATGG~~~~------~~-------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~--~~~~~~~~ 239 (786)
|+ +|||||||+..+ |. .++++..+||||+.||+++||.+.+|++.|++|+...+.+ +.+.+. .
T Consensus 257 A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~-~ 335 (557)
T PRK07843 257 ARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAWWGPTIPLPGGPWFALSER-N 335 (557)
T ss_pred eceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhccCCccccCCCcchhhhhh-c
Confidence 95 799999999984 32 2456788999999999999999999999999987543322 222221 1
Q ss_pred cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHH----H-----------------HHhc---CCCCCC--------
Q psy9575 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQ----E-----------------IKEG---RGCGPN-------- 287 (786)
Q Consensus 240 ~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~----~-----------------~~~g---~g~~~~-------- 287 (786)
.+++++||.+|+||++|+. +++....++.. + ..+. .++.+.
T Consensus 336 ~~g~i~VN~~G~RF~nE~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~ 408 (557)
T PRK07843 336 LPGSIIVNMSGKRFMNESA-------PYVEAVHHMYGGEYGQGPGPGENIPAWLVFDQRYRDRYLFAGLQPRQPIPSRWL 408 (557)
T ss_pred cCCeEEECCCCCcccCCCC-------cHHHHHHHHHhhccccccCCCCCceEEEEECchHHhhcCcCcCCCCCCCcHHHh
Confidence 3578999999999999653 23333333220 0 0000 000000
Q ss_pred CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCC--C-------------------------CCC---ee
Q psy9575 288 KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNA--L-------------------------KEP---IP 328 (786)
Q Consensus 288 ~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~--~-------------------------~~~---i~ 328 (786)
..++. .| ..+++++.+++++..|++.+.. |.|+ . +.| ++
T Consensus 409 ~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~~--G~D~~Fgr~~~~~~~~~~~~~~~~~~~l~~i~~~PfYA~~ 486 (557)
T PRK07843 409 ESGVIVKADTLAELAAKIGVPADALTATVQRFNGFARS--GVDEDFHRGESAYDRYYGDPTNKPNPNLGELSHAPFYAAK 486 (557)
T ss_pred hcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhc--CCCcccCCCCcccccccCCCCCCCCcccccccCCCeEEEE
Confidence 00011 11 1146778888899999998876 4332 1 122 67
Q ss_pred eeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccC-hhhhHHHHHHHHHHHHHHHHH
Q psy9575 329 VIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLG-TNSLLDLLVFGRSAGNHILSL 401 (786)
Q Consensus 329 v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlg-g~~l~~a~v~G~~Ag~~aa~~ 401 (786)
+.|..++|+||++||+++||||.++ ++|||||||||++ ++++|.+|++ |+++++|++|||+||++|++.
T Consensus 487 ~~~~~~~T~GGl~id~~~qVld~~g---~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 487 MVPGDLGTKGGLRTDVRGRVLRDDG---SVIEGLYAAGNVS-APVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred EecccceeCCCceECCCceEECCCC---CCcCCceeccccc-cccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 7889999999999999999999998 9999999999998 6899999998 999999999999999999853
No 65
>KOG3049|consensus
Probab=100.00 E-value=2.9e-41 Score=310.34 Aligned_cols=229 Identities=54% Similarity=0.992 Sum_probs=211.9
Q ss_pred CCcccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccc
Q psy9575 554 PLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE 633 (786)
Q Consensus 554 ~~~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~ 633 (786)
..+|.||+|+...+ +|+.|+|+|+.++=|.-|||||-+|+.+.||+|.|+.|||.|+||||+|.|||...|||..+++.
T Consensus 48 tFeIYRwnPd~pg~-kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtLACi~kId~ 126 (288)
T KOG3049|consen 48 TFEIYRWNPDNPGD-KPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLACICKIDQ 126 (288)
T ss_pred eEEEEecCCCCCCC-CccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccCCCceeEEEEeecc
Confidence 44589999986443 89999999999886678999999999999999999999999999999999999999999999987
Q ss_pred c-CcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCCc---ccccCChhHHHhhhchhhCcccCcccCCCCC
Q psy9575 634 L-KQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPE---KERLQSPSQRKILDGLYECILCGCCSTACPS 709 (786)
Q Consensus 634 ~-~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~ 709 (786)
. ....+|-||++.-+++||+.|+..|+..++.+.||+..++...+ ++.+|+.+++..++.++.||.|.+|+..||.
T Consensus 127 n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCACCsTSCPS 206 (288)
T KOG3049|consen 127 NESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCACCSTSCPS 206 (288)
T ss_pred CCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHHHHHHHHhcCCCcc
Confidence 4 45778999999999999999999999999999999988766544 4667899999999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHHHHHHHHHH
Q psy9575 710 FWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783 (786)
Q Consensus 710 ~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~ 783 (786)
|.++.+.|+||++++.++|++.|+||+...+|+..+.+++.++.|.+-.+|...||+|+++...|.+++..+..
T Consensus 207 YWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll~~ 280 (288)
T KOG3049|consen 207 YWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLLAG 280 (288)
T ss_pred cccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhheehhhhhhhhhcCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764
No 66
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=6.5e-38 Score=361.04 Aligned_cols=391 Identities=21% Similarity=0.224 Sum_probs=264.5
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
|+||++|+++|++|+||||....+|++..++|.+....+.. + .|+++.+..++.+...+..++++++.+++++.+
T Consensus 22 l~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (574)
T PRK12842 22 LSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGAFFDAAAVEAFLDNGPE 101 (574)
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCCCCCHHHHHHHHhccHH
Confidence 57999999999999999999888788877766554432221 2 678888887777777778899999999999999
Q ss_pred HHHHHHH-cCCCccccCCCcccccCCCCcc---C----CCCC-----------CCcceEE--------------------
Q psy9575 76 VVYELEH-FGMPFDRNKNGTIYQRPFGGHS---S----NFGE-----------KPIARAC-------------------- 116 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~~g~~~~~~~gg~~---~----~~~~-----------~~~~r~~-------------------- 116 (786)
.++||++ .|+.|.......+.....+++. . .+.. +...+..
T Consensus 102 ~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 181 (574)
T PRK12842 102 MVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGMMFNSSNADLKHFFNAT 181 (574)
T ss_pred HHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCcccccccceecccchHHHHHHHhhc
Confidence 9999987 6998853211111100011110 0 0000 0000000
Q ss_pred ----------------------Ee---cCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcE
Q psy9575 117 ----------------------AV---ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNI 171 (786)
Q Consensus 117 ----------------------~~---~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~ 171 (786)
+. .-..|+.++..|.+.+++.||+|++++.|++|+.++ ++|+|+++.+ .++ .
T Consensus 182 ~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~-~~~-~ 258 (574)
T PRK12842 182 RSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVID-AGG-E 258 (574)
T ss_pred cchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEc-CCc-e
Confidence 00 002467888899999999999999999999999986 9999998865 334 3
Q ss_pred EEEEe-CeEEEcCCCCCcc-------Ccc--------CcccCCCchHHHHHHHHCCCCccCCC--ccccccccccC--CC
Q psy9575 172 MILES-KITILATGGGGRI-------WAA--------STNAFINTGDGLGMAARAGLPLEDME--FWQFHPTGVAG--AG 231 (786)
Q Consensus 172 ~~i~A-kaVVlATGG~~~~-------~~~--------~~~~~~~tGdg~~~a~~aGa~l~~~e--~~q~~p~~~~~--~~ 231 (786)
..+.| ++|||||||++++ |.. ++++..+||||+.||+++||.+.++. ...++|....+ .+
T Consensus 259 ~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~~~~~~~~~~~~~~~~~~~~ 338 (574)
T PRK12842 259 RRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDIRFPDAAAWMPVSKVPLGGG 338 (574)
T ss_pred EEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCcccCCcccccccccccccCCCC
Confidence 45778 5899999999954 221 45677899999999999999986532 11223321111 01
Q ss_pred Cc--cc--cccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHH---------------H-HHhcCCCC---C--
Q psy9575 232 VL--IT--EGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQ---------------E-IKEGRGCG---P-- 286 (786)
Q Consensus 232 ~~--~~--~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~---------------~-~~~g~g~~---~-- 286 (786)
.. .. ......+.++||.+|+||++|..+. ..+..++.. + ..+..+.. +
T Consensus 339 ~~~~~~~~~~~~~~g~i~Vn~~G~RF~nE~~~~-------~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~ 411 (574)
T PRK12842 339 RTGVFPHLLDRYKPGVIGVLRNGKRFTNESNSY-------HDVGAAMIRACEGQKETAMWLICDRATLRKYGLGYAKPAP 411 (574)
T ss_pred ccccccccccccCCceEEECCCCCCccCCCCcH-------hHHHHHHHHhcccCCCccEEEEEcHHHHhhcCcccCCCCC
Confidence 00 00 0012346799999999999975432 112111111 0 00000000 0
Q ss_pred --C----CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCCC-------------------------CCC
Q psy9575 287 --N----KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNAL-------------------------KEP 326 (786)
Q Consensus 287 --~----~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~~-------------------------~~~ 326 (786)
. ..++. .| .-+++++.+++++..|++++......|+. +.|
T Consensus 412 ~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~~Fgr~~~~~~~~~~~~~~~~~~~l~~i~~~P 491 (574)
T PRK12842 412 MPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGAVKGIDPAFGRGSTSFNRYLGDPDHKPNPCVAPIGSGP 491 (574)
T ss_pred CChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCcchhhhhcCCcccCCCcccccCCCCC
Confidence 0 00111 12 12567888999999999998763222221 223
Q ss_pred ---eeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccC-hhhhHHHHHHHHHHHHHHHHHh
Q psy9575 327 ---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLG-TNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 327 ---i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlg-g~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
+++.|..+.|+||++||+++||||.|+ ++|||||||||++ +|++|.+|++ |+++++|++|||+||++||+.+
T Consensus 492 fYA~~~~~~~~~T~GGl~id~~~qVld~~g---~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 492 FYAVKVIMGDLGTFDGLRTDVTGEVLDADG---TPIAGLYAVGNDR-ASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred EEEEEecccccccCCCcCCCCCceEECCCC---CCcCCceeccccc-ccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 677888999999999999999999999 9999999999999 6899999988 9999999999999999999887
Q ss_pred hhc
Q psy9575 403 LKK 405 (786)
Q Consensus 403 ~~~ 405 (786)
++.
T Consensus 568 ~~~ 570 (574)
T PRK12842 568 GGR 570 (574)
T ss_pred ccc
Confidence 654
No 67
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=7.6e-37 Score=351.88 Aligned_cols=387 Identities=21% Similarity=0.218 Sum_probs=263.1
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCC----C-CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM----S-KDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPK 75 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~----~-~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~ 75 (786)
++||+.|+++|++|+||||....+|.+..++|.++.+.+.. + .++.+..+..+.+...+..++++++.+++++.+
T Consensus 25 ~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~ 104 (581)
T PRK06134 25 LSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELGARYDAARIDAFLEAGPH 104 (581)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhCcCCCHHHHHHHHhccHH
Confidence 47899999999999999998877777777776666544332 1 567777776666666677899999999999999
Q ss_pred HHHHHHH-cCCCccccCC-Ccccc----cCCCCccC---CCCC-----------CCcceE--------------------
Q psy9575 76 VVYELEH-FGMPFDRNKN-GTIYQ----RPFGGHSS---NFGE-----------KPIARA-------------------- 115 (786)
Q Consensus 76 ~i~~l~~-~Gv~~~~~~~-g~~~~----~~~gg~~~---~~~~-----------~~~~r~-------------------- 115 (786)
.++||++ .|++|..... ..+.. ...++.+. .+.. ...++.
T Consensus 105 ~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 184 (581)
T PRK06134 105 MVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFMGMPIMAGADLAAFLNPT 184 (581)
T ss_pred HHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhccccccccccccccccHHHHHHHHHhh
Confidence 9999998 5888853210 00000 00111100 0000 000000
Q ss_pred ---------------------EEe---cCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcE
Q psy9575 116 ---------------------CAV---ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNI 171 (786)
Q Consensus 116 ---------------------~~~---~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~ 171 (786)
.+. ....|..++..|.+.+++.||+|+++++|++|+.++ ++|+|+.+.+ ++..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~--~~~~ 261 (581)
T PRK06134 185 RSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVET--PGGL 261 (581)
T ss_pred cCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEE--CCcE
Confidence 000 012467788999999999999999999999999885 9999998864 3445
Q ss_pred EEEEe-CeEEEcCCCCCcc-------Ccc--------CcccCCCchHHHHHHHHCCCCccC-C-CccccccccccC--CC
Q psy9575 172 MILES-KITILATGGGGRI-------WAA--------STNAFINTGDGLGMAARAGLPLED-M-EFWQFHPTGVAG--AG 231 (786)
Q Consensus 172 ~~i~A-kaVVlATGG~~~~-------~~~--------~~~~~~~tGdg~~~a~~aGa~l~~-~-e~~q~~p~~~~~--~~ 231 (786)
+.|+| |+|||||||++++ +.. +.++..+||||+.||+++||.+.. | .+.+++|+...+ .+
T Consensus 262 ~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~~~~~~~~~~~~~~~~~~~~~g 341 (581)
T PRK06134 262 QEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVVATDLASPVAWAPVSLVPHADG 341 (581)
T ss_pred EEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCccCCCCcccccccccccCCCCC
Confidence 57899 9999999999974 211 345678999999999999999863 3 457788875432 11
Q ss_pred C---ccccccc-cCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHH----------------HhcC--C-CCCC-
Q psy9575 232 V---LITEGVR-GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEI----------------KEGR--G-CGPN- 287 (786)
Q Consensus 232 ~---~~~~~~~-~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~----------------~~g~--g-~~~~- 287 (786)
. ......+ ..++++||.+|+||++|..+. .....++.... .... + ..+.
T Consensus 342 ~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~-------~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~ 414 (581)
T PRK06134 342 SVGHFPHIIERGKPGLIGVLANGKRFVNEADSY-------HDYVAAMFAATPPGQPVRSWLICDHRFLRRYGLGHIRPAP 414 (581)
T ss_pred cccccccccccCCCCeEEECCCCCcccCCCcch-------hhHHHHHHHhcCCCCCccEEEEECHHHHhhcCccccCCCC
Confidence 1 0000011 256899999999999974321 11111111100 0000 0 0000
Q ss_pred -------CCeEE--Ee-------CCCCChhHHHhHchhHHHHHHhhcCCCC--C--------------------------
Q psy9575 288 -------KDHVM--LD-------LRHINSETIINRLPSILEIGNKFANVNA--L-------------------------- 323 (786)
Q Consensus 288 -------~~~v~--ld-------~~~~~~~~~~~~~~~~~~~~~~~~g~d~--~-------------------------- 323 (786)
..+.. .| ..+++++.|++++..|++.+.. |.|+ .
T Consensus 415 ~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~--G~D~dFgr~~~~~~~~~~~~~~~~~~~~l~pi~ 492 (581)
T PRK06134 415 LPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHARN--GQDPDFGRGSTPYNRKQGDPAHGGPNPCVAPIE 492 (581)
T ss_pred CChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCCcccCCCCchhhcccCCcccCCCCcccCcCC
Confidence 00111 12 1246788889999999999876 4332 1
Q ss_pred CCC---eeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCc-cChhhhHHHHHHHHHHHHHHH
Q psy9575 324 KEP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANR-LGTNSLLDLLVFGRSAGNHIL 399 (786)
Q Consensus 324 ~~~---i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~r-lgg~~l~~a~v~G~~Ag~~aa 399 (786)
+.| +++.|..++|+||++||+++||||.++ ++|||||||||++ +|++|.++ .+|+++++|+||||+||++||
T Consensus 493 ~gPfYA~~~~~~~~~T~GGl~id~~~qVld~~g---~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~fGriAg~~aa 568 (581)
T PRK06134 493 HGPFYAVKVLPGCLGTFAGLKTDADARVLDQAG---QPIPGLYAAGNDM-ASVMGGFYPSGGITLGPALTFGYIAGRHIA 568 (581)
T ss_pred CCCeEEEEeeccccccCCCccCCCCCceECCCC---CCcCcceeccccc-cccccCCcCCcchhHHHHHHHHHHHHHHHh
Confidence 122 677889999999999999999999999 9999999999998 57777654 579999999999999999998
Q ss_pred HHhh
Q psy9575 400 SLEL 403 (786)
Q Consensus 400 ~~~~ 403 (786)
+...
T Consensus 569 ~~~~ 572 (581)
T PRK06134 569 GASG 572 (581)
T ss_pred hcCC
Confidence 7653
No 68
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=4.8e-33 Score=314.60 Aligned_cols=213 Identities=34% Similarity=0.645 Sum_probs=185.4
Q ss_pred CcccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCccccccccccccc
Q psy9575 555 LTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNEL 634 (786)
Q Consensus 555 ~~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~ 634 (786)
++|+||+|+. + .|||++|+|+++++ +||||||++++.+.+|+|+|+.+|+.|+||+|.|+|||+++|||.|++.++
T Consensus 6 ~~i~r~~~~~--~-~~~~~~~~v~~~~~-~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~~~ 81 (486)
T PRK06259 6 ITVKRFDPEK--D-EPHFESYEVPVKEG-MTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVEDG 81 (486)
T ss_pred EEEEecCCCC--C-CceeEEEEEeCCCC-ChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCCCC
Confidence 4599999985 3 79999999999987 999999999999779999999999999999999999999999999999775
Q ss_pred CcceEECCCCCCCceeeeeecchHhHHhcccccceeecCCCCCcccccCChhHHHhhhchhhCcccCcccCCCCCcccCC
Q psy9575 635 KQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714 (786)
Q Consensus 635 ~~~~~i~p~~~~~~~~dL~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~ 714 (786)
++|+|++ +|+++||++|...+...+..+++|+..+. ...+++++.+.++++.+||+||.|.++||++..
T Consensus 82 ---~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~-- 150 (486)
T PRK06259 82 ---MIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKN-----EKITYPEDIEDIKKLRGCIECLSCVSTCPARKV-- 150 (486)
T ss_pred ---CEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCc-----cCCCCHHHHHHHhCchhcccCccccccCCCCcc--
Confidence 7899998 99999999999999999999988886543 244678888888889999999999999999975
Q ss_pred CCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCCh-HHHHHHHHHHHHHhc
Q psy9575 715 DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNP-NRSINKIKELMIYRI 785 (786)
Q Consensus 715 ~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~-~~~i~~lr~~~~~~~ 785 (786)
.+|.||..+..++++..++++.... +.... ..++|.|++||+|..+||+||++ .++|..+|+.+.+++
T Consensus 151 ~~~~gp~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~~~g 219 (486)
T PRK06259 151 SDYPGPTFMRQLARFAFDPRDEGDR--EKEAF-DEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAFKKG 219 (486)
T ss_pred ccCcCHHHHHHHHHHhhCCcchhhH--HHHHh-cCCCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHHHcc
Confidence 5799999999999988887765422 22111 24789999999999999999998 899999999887765
No 69
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=99.96 E-value=8.4e-30 Score=232.78 Aligned_cols=126 Identities=37% Similarity=0.603 Sum_probs=107.4
Q ss_pred HHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHhccccccCCCcccchHHHHHHhHhhHHHHHHHHHHHHhhcccCCcc
Q psy9575 439 ANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGA 518 (786)
Q Consensus 439 ~~~l~~~m~~~~g~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~~~~a~~~~~aal~R~ESRG~ 518 (786)
+++||++||+++||+|++++|++|+++|++|++++..+.+.+....+|+++..++|++||+++|++++.|||+|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 47899999999999999999999999999999999888888887888999999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccceEEEEecC---ceeeeccCcCCCCcccccCCCCcCC
Q psy9575 519 HAHNDFKNRDDINWLKHSIWYSNG---NRIEFKPVNLKPLTVKTVHPKKHHD 567 (786)
Q Consensus 519 h~R~D~p~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~p~~r~~ 567 (786)
|||.|||++||++|++++++..++ ++++++||++.. .+|+|+.|.|
T Consensus 81 H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~pv~~~~---~~~~p~~r~y 129 (129)
T PF02910_consen 81 HYREDYPERDDENWLKHIIVRLDGGGEMRISYEPVPFTD---IKIPPKERSY 129 (129)
T ss_dssp BEBTTSSSCETTTCSEEEEEEEETTTEEEEEEEE--GSC---SSS-S---SS
T ss_pred chhccccccccccccEEEEEEEcCCCceEEEEecCCCcc---CCCCCccCCC
Confidence 999999999999999999987643 579999999421 1679998875
No 70
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.95 E-value=1.5e-28 Score=212.63 Aligned_cols=105 Identities=48% Similarity=0.818 Sum_probs=88.1
Q ss_pred CcccccCCCCcCCCCCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCccccccccccccc
Q psy9575 555 LTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNEL 634 (786)
Q Consensus 555 ~~v~~~~p~~r~~~~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~~ 634 (786)
+.|+||+|+.. ...|||++|+|+++++ +||||||.+|+.++||+|+|+.+||.|+||+|+|.|||+++|||.|++.+.
T Consensus 2 ~~I~R~~~~~~-~~~~~~~~y~v~~~~~-~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~ 79 (110)
T PF13085_consen 2 LRIFRFDPESD-EGEPYYQEYEVPVEPG-MTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDL 79 (110)
T ss_dssp EEEEE--TTST-TSS-EEEEEEEEGGST-SBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred EEEEEcCCCCC-CCCCeEEEEEecCCCC-CcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhc
Confidence 35899999642 2389999999999987 999999999999999999999999999999999999999999999999998
Q ss_pred Cc----ceEECCCCCCCceeeeeecchHhHH
Q psy9575 635 KQ----PIIIRPLPGLPVIRDLVVDMTLFFK 661 (786)
Q Consensus 635 ~~----~~~i~p~~~~~~~~dL~~d~~~~~~ 661 (786)
.. .++|+||++||++|||++|++.|++
T Consensus 80 ~~~~~~~i~IePL~~fpVirDLvVD~~~f~e 110 (110)
T PF13085_consen 80 IEKFGNVITIEPLPNFPVIRDLVVDMSPFFE 110 (110)
T ss_dssp TTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred cCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence 64 4899999999999999999999864
No 71
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.94 E-value=2.7e-25 Score=230.22 Aligned_cols=339 Identities=17% Similarity=0.216 Sum_probs=216.3
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHH-HHHHH-HHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIE-FMCKE-APKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~-~~~~~-~~~~i~ 78 (786)
|+||+.|++.|.+|+|+|+++..+-.-.+++||-++..+. ++ ++.++...-. +...++ .+.+. ..+.++
T Consensus 16 lMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~--~~-~~~~ls~~p~------~~~fl~sal~~ft~~d~i~ 86 (408)
T COG2081 16 LMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNS--EA-PDEFLSRNPG------NGHFLKSALARFTPEDFID 86 (408)
T ss_pred HHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccc--cc-HHHHHHhCCC------cchHHHHHHHhCCHHHHHH
Confidence 6899999999999999999988877888888888887765 34 6665544211 112222 22222 347889
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCE
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDI 158 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v 158 (786)
|.+.+|+++.....|+++. .......|+++|..++++.||+++++++|.++.+++
T Consensus 87 ~~e~~Gi~~~e~~~Gr~Fp---------------------~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---- 141 (408)
T COG2081 87 WVEGLGIALKEEDLGRMFP---------------------DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD---- 141 (408)
T ss_pred HHHhcCCeeEEccCceecC---------------------CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC----
Confidence 9999999998777776542 223456899999999999999999999999999885
Q ss_pred EEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC---CCC---
Q psy9575 159 LGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG---AGV--- 232 (786)
Q Consensus 159 ~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~---~~~--- 232 (786)
....++..+|+ .|+|+++||||||.+ .+..++||+||..|...|..+..+. |+.+.- ..+
T Consensus 142 -~~f~l~t~~g~--~i~~d~lilAtGG~S------~P~lGstg~gy~iA~~~G~~I~~~r-----palvpft~~~~~~~~ 207 (408)
T COG2081 142 -SGFRLDTSSGE--TVKCDSLILATGGKS------WPKLGSTGFGYPIARQFGHTITPLR-----PALVPFTLDESFLER 207 (408)
T ss_pred -ceEEEEcCCCC--EEEccEEEEecCCcC------CCCCCCCchhhHHHHHcCCccccCc-----cccCCccCCHHHHHH
Confidence 12233446775 689999999999987 4445789999999999999987643 221110 000
Q ss_pred ccccccccCCcEEEcCCCCcccccc-CCccCCCCchhHHH-HHHHHHHHhcCCCCCCCCeEEEeCC-CCChhHHHhH---
Q psy9575 233 LITEGVRGEGGILINSNGERFMERY-APILKDLAPRDFVS-RAMDQEIKEGRGCGPNKDHVMLDLR-HINSETIINR--- 306 (786)
Q Consensus 233 ~~~~~~~~~g~~~vn~~G~rf~~~~-~p~~~~~~~~~~~~-~~i~~~~~~g~g~~~~~~~v~ld~~-~~~~~~~~~~--- 306 (786)
+....+..--..+.+.+|..|-.+. .... -+...-+.. .+.++. .+..+ +..+.+|+. +.+.+.+...
T Consensus 208 l~gls~~~v~~~v~~~~g~~~~g~~LfTh~-GiSGPavl~~Ss~~~~-~~~~~----~~~i~iDllP~~~~~~l~~~l~~ 281 (408)
T COG2081 208 LAGLSLKSVPLSVTAGKGITFQGDLLFTHR-GLSGPAVLQLSSYWRL-LEKKG----GATLSIDLLPDVDAEELLRELRR 281 (408)
T ss_pred hcCCcccceEEEEecCCCceeecceEEEec-CCcHHHHHHHHHHHHH-hccCC----CceEEEecCCCCCHHHHHHHHHh
Confidence 0000111111123333333332210 0000 011111111 122222 22211 234777753 4444433221
Q ss_pred ----------c----h-hHHHHHHhhcCCCCCCC-----------------Ceeeee-------cccccccCcccCCCCc
Q psy9575 307 ----------L----P-SILEIGNKFANVNALKE-----------------PIPVIP-------TIHYQMGGIPTNIYGQ 347 (786)
Q Consensus 307 ----------~----~-~~~~~~~~~~g~d~~~~-----------------~i~v~p-------~~~~t~GGi~vd~~~~ 347 (786)
+ | ++.+...+..+| +.+. .+++.| .+..|.|||.+++
T Consensus 282 ~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~VT~GGV~~~e--- 357 (408)
T COG2081 282 ANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEVTAGGVDTKE--- 357 (408)
T ss_pred hChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEEecCceehhh---
Confidence 1 1 122222233455 2110 033333 3456999999987
Q ss_pred ccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 348 VIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 348 vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
||.++|++..+||||+|||+. +++| ++||+++.+||++|+.||+.++++.
T Consensus 358 -id~kTmesk~vPGLyf~GEvl--Dv~g--~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 358 -IDSKTMESKKVPGLYFAGEVL--DVTG--WTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred -cCHHHHHhhcCCCcEEEEEEE--Eecc--CCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 888999999999999999999 9988 4999999999999999999999874
No 72
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.92 E-value=2e-24 Score=214.57 Aligned_cols=385 Identities=20% Similarity=0.255 Sum_probs=242.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCC--CCChhhhcccCeeeccCCCC-----CCCHHHHHHHHHHhcCCCCc-----HHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFP--TRSHTVAAQGGISASLGNMS-----KDNWHWHMFDTIKGSDYLGD-----QDAIEF 68 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~--~~g~s~~a~Ggi~a~~~~~~-----~d~~~~~~~d~~~~~~~~~~-----~~~v~~ 68 (786)
|-||.++|++|.+|+|+|+... .+|...|+-||..-+.++.+ .||.+...+|++....+-.. ..+.+.
T Consensus 18 lvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~FDRPEDhWPr~WAeA 97 (552)
T COG3573 18 LVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAFDRPEDHWPRQWAEA 97 (552)
T ss_pred HHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhcccccCCccccchHHHHHH
Confidence 4688999999999999998643 57889999999887776632 57777778888765544221 234555
Q ss_pred HHHH-HHHHHHHHHHcCCCcccc----CCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc----CCc
Q psy9575 69 MCKE-APKVVYELEHFGMPFDRN----KNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH----AKT 139 (786)
Q Consensus 69 ~~~~-~~~~i~~l~~~Gv~~~~~----~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~----~Gv 139 (786)
+.+. +.+.-.||.+.|+.|-.. +.|-.. ..+| .++.||- |....||..++..+.+++++ .-|
T Consensus 98 Yl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~---A~gh-----GNSVPRF-HiTWGTGPgvl~pFvr~~re~~~~~~v 168 (552)
T COG3573 98 YLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSD---AQGH-----GNSVPRF-HITWGTGPGVLEPFVRRLREAQRRGRV 168 (552)
T ss_pred HHhhhccchhHHHHHcCCeeeeeccchhhCCcc---cCCC-----CCCCcce-EEeecCCcchhhHHHHHHHHHHhCCce
Confidence 5544 346677999999876422 111111 1122 2377774 34445666666555555544 369
Q ss_pred eEEeceEEEeeeecCCCCEEEEEEEEc-----C---------CCcEEEEEeCeEEEcCCCCCccC-------c-------
Q psy9575 140 NFFIEWMAIDLISDSEGDILGVVALEM-----E---------TGNIMILESKITILATGGGGRIW-------A------- 191 (786)
Q Consensus 140 ~i~~~~~v~~L~~~~~g~v~G~~~~~~-----~---------~g~~~~i~AkaVVlATGG~~~~~-------~------- 191 (786)
+|.++++|..|...+ |+|+|+.+--+ . .|+ ..+.|.+||+|+||.++|. .
T Consensus 169 ~f~~RHrV~~l~~t~-grvtGv~GdVLeps~v~RG~~SSR~~~Gd-Fef~A~aviv~SGGIGGnhelVRrnWP~eRlG~~ 246 (552)
T COG3573 169 TFRFRHRVDGLTTTG-GRVTGVRGDVLEPSDVERGQPSSREVVGD-FEFSASAVIVASGGIGGNHELVRRNWPTERLGRA 246 (552)
T ss_pred EEEeeeeccceEeeC-CeEeeecccccCCCccccCCCccceeecc-eEEeeeeEEEecCCcCCCHHHHHhcCchhhcCCC
Confidence 999999999999997 99999865311 1 233 3689999999999999872 2
Q ss_pred ----cCcccCCCchHHHHHHHHCCCCccCCCccccccccccCCCCccc----cccccCCcEEEcCCCCccccccCCccCC
Q psy9575 192 ----ASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLIT----EGVRGEGGILINSNGERFMERYAPILKD 263 (786)
Q Consensus 192 ----~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~~~~~~~----~~~~~~g~~~vn~~G~rf~~~~~p~~~~ 263 (786)
.+..|...+|-.+.++..+|+.++|.+-+..+..++.++..... --+.++..+|+|..|+|+--...|.+..
T Consensus 247 Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNwdPiWp~HgIRIlPGPSSlWlDa~G~RLp~P~~PGfdt 326 (552)
T COG3573 247 PEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWLDAAGKRLPVPLFPGFDT 326 (552)
T ss_pred hHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccCCCcCcccceeeccCCcceeECCCCCcCCCCcCCCcch
Confidence 13346678999999999999999999876655555543221111 1134677899999999975443333222
Q ss_pred CCc------------hhHHHHHHHH-H--------------------H-HhcCCCCCCCCeEEEeC--------------
Q psy9575 264 LAP------------RDFVSRAMDQ-E--------------------I-KEGRGCGPNKDHVMLDL-------------- 295 (786)
Q Consensus 264 ~~~------------~~~~~~~i~~-~--------------------~-~~g~g~~~~~~~v~ld~-------------- 295 (786)
+.+ +-++.+.|.+ | + +.+.++ |..-..|+|-
T Consensus 327 lgTL~hi~~~G~~ysWFiLt~kiI~kEFaLSGsEQNPDLTGkd~rlll~Ra~k~p-PgPV~AFmdrGeDFvv~~~L~eLV 405 (552)
T COG3573 327 LGTLKHITSTGYDYSWFILTRKIIKKEFALSGSEQNPDLTGKDLRLLLRRAGKGP-PGPVQAFMDRGEDFVVADTLRELV 405 (552)
T ss_pred hhHHHHHhhcCCCceeeeeeHHHHHHHhcccccccCCCccchhHHHHHHHhcCCC-CccHHHHHhcCcceehhhhHHHHH
Confidence 211 1111222211 1 0 112221 1100112220
Q ss_pred ---CC------CChhHHHhHch--------------hH--HHHHHhh------------cCCCCCCCC---eeeeecccc
Q psy9575 296 ---RH------INSETIINRLP--------------SI--LEIGNKF------------ANVNALKEP---IPVIPTIHY 335 (786)
Q Consensus 296 ---~~------~~~~~~~~~~~--------------~~--~~~~~~~------------~g~d~~~~~---i~v~p~~~~ 335 (786)
.. ++.+.++..+. ++ ..-++.+ .=+||...| +++..-...
T Consensus 406 a~MN~l~g~~~Ld~a~v~r~i~aRDrev~N~~sKDaQitairgARaylgdrl~R~akph~llDPa~GPLIAVrLhiLTRK 485 (552)
T COG3573 406 AGMNELTGGEPLDYATVEREIEARDREVVNKYSKDAQITAIRGARAYLGDRLTRVAKPHRLLDPANGPLIAVRLHILTRK 485 (552)
T ss_pred HHhhccCCCCcccHHHHHHHHHhhhhhhhcccccchhhhhHHHHHHHhhhhhhhccCcccccCcccCceEEEEEEeeeeh
Confidence 00 01111110000 00 0001111 224555555 333334456
Q ss_pred cccCcccCCCCcccccCCCCCcccCceeeecccC---CccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 336 QMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECA---CVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 336 t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a---~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
|.||+.+|.+++||+.+| +++|||||+||++ +||+||-|-|-|.-|+.|+.+|+.||+.|+.
T Consensus 486 tLGGl~TdL~~rVl~A~G---qPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaaa~ 550 (552)
T COG3573 486 TLGGLETDLDARVLGADG---QPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGRAAAG 550 (552)
T ss_pred hccCcccchhhhhhCCCC---CCCcchhhcchhcccCCCcccchhhhccceecceeecchhhhhhhcc
Confidence 999999999999999999 9999999999999 4689999999999999999999999999875
No 73
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.91 E-value=3.1e-24 Score=233.91 Aligned_cols=338 Identities=18% Similarity=0.228 Sum_probs=184.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||+.|++.|++|+|+||+...+.....+++|-+...+. ..++..+...+.....+ .. .....+ ...+.+.|+
T Consensus 13 l~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~--~~~~~~~~~~~~~~~~f-~~-~~l~~f--~~~d~~~ff 86 (409)
T PF03486_consen 13 LMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNL--NIDPSEFLSGYGRNPKF-LK-SALKRF--SPEDLIAFF 86 (409)
T ss_dssp HHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEET--TSSGGGEECS-TBTTTC-TH-HHHHHS---HHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCcccccceeecCCCCcccccc--ccchhhHhhhcccchHH-HH-HHHhcC--CHHHHHHHH
Confidence 6899999999999999999988766666777777766552 22222222111111111 11 222222 234788999
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
+++|+++...++|+++. .......++..|.+.++++||+|+++++|.+|.+++ +.+.+
T Consensus 87 ~~~Gv~~~~~~~gr~fP---------------------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~ 144 (409)
T PF03486_consen 87 EELGVPTKIEEDGRVFP---------------------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFG 144 (409)
T ss_dssp HHTT--EEE-STTEEEE---------------------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEE
T ss_pred HhcCCeEEEcCCCEECC---------------------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeE
Confidence 99999997766666542 223456899999999999999999999999999986 77677
Q ss_pred EEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccccC--CCCc----c
Q psy9575 161 VVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG--AGVL----I 234 (786)
Q Consensus 161 ~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~~--~~~~----~ 234 (786)
+.+ .+++ .+.|++|||||||.+ .+..+++|+|+.+|.+.|..++.+ .|....- .... -
T Consensus 145 v~~---~~~~--~~~a~~vILAtGG~S------~p~~GS~G~gy~~a~~lGh~i~~~-----~PaL~~l~~~~~~~~~~~ 208 (409)
T PF03486_consen 145 VKT---KNGG--EYEADAVILATGGKS------YPKTGSDGSGYRIAKKLGHTITPP-----YPALVPLKCDEPWLFFKE 208 (409)
T ss_dssp EEE---TTTE--EEEESEEEE----SS------SGGGT-SSHHHHHHHHTT--EEEE-----EEES--EE--HHHHHTGG
T ss_pred eec---cCcc--cccCCEEEEecCCCC------ccccCCCcHHHHHHHHCCCcEecC-----CCccCCeeecchhhhhhh
Confidence 665 2332 689999999999988 333468999999999999988543 3322110 0000 0
Q ss_pred ccccccCCcE-EEcCCCCccccccCC----ccC-CCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCC-CCChhHHHhHc
Q psy9575 235 TEGVRGEGGI-LINSNGERFMERYAP----ILK-DLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLR-HINSETIINRL 307 (786)
Q Consensus 235 ~~~~~~~g~~-~vn~~G~rf~~~~~p----~~~-~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~-~~~~~~~~~~~ 307 (786)
..+++-.+.+ ++ +|+.-..+..+ +.+ .-.+--.+|+.+..++.+..+ ..+.+|+- .++.+.+.+.+
T Consensus 209 l~Gv~~~~~~~~~--~~~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~~~~-----~~i~id~~p~~~~e~l~~~l 281 (409)
T PF03486_consen 209 LSGVRLKAVISLL--DGKKKASETGELLFTHYGISGPAILQLSRFIARALNKKKK-----VEISIDFLPDLSEEELEELL 281 (409)
T ss_dssp GTT-EEEEEEEEE---ECTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH--TT-----EEEEEESSTTS-HHHHHHHH
T ss_pred hCCCceeeEEEEe--ccCCccceeeeEEEECCccchHHHHHHHHHHHHHHHhcCC-----ceEEEEeCCCCCHHHHHHHH
Confidence 0111212111 22 22221111100 000 000001133444444444322 24777753 45544443332
Q ss_pred h---------------------hHHHHHHhhcCC-CCCCCC-----------------eeeee-------cccccccCcc
Q psy9575 308 P---------------------SILEIGNKFANV-NALKEP-----------------IPVIP-------TIHYQMGGIP 341 (786)
Q Consensus 308 ~---------------------~~~~~~~~~~g~-d~~~~~-----------------i~v~p-------~~~~t~GGi~ 341 (786)
. .+.....+..++ |+.+.. +++.+ .+..|.|||.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g~~~~~~A~VT~GGV~ 361 (409)
T PF03486_consen 282 QERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTGTGGFDKAQVTAGGVD 361 (409)
T ss_dssp HHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESEE--TTT-SEEEEEE-
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecccCCCceEEEECCCcC
Confidence 1 122222233577 653211 23322 3566999999
Q ss_pred cCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHH
Q psy9575 342 TNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNH 397 (786)
Q Consensus 342 vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~ 397 (786)
+++ +|+++|+++.+||||+|||+. +++|. +||++|.|||.+|++||+.
T Consensus 362 ~~e----id~~TmeSk~~~gLyf~GEvL--DvdG~--~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 362 LKE----IDPKTMESKLVPGLYFAGEVL--DVDGP--CGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp GGG----B-TTT-BBSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH-
T ss_pred HHH----CCHhhhcccCCCCeEEEEEEE--EeccC--cCchhHhHHHHHHHHhhCC
Confidence 988 899999999999999999999 88884 9999999999999999974
No 74
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.90 E-value=6.7e-22 Score=218.24 Aligned_cols=334 Identities=21% Similarity=0.266 Sum_probs=207.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH--HHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCK--EAPKVVY 78 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~--~~~~~i~ 78 (786)
|+||++|+++|++|+|+||+...++....+++|.+...+. .+...+.... ..++..++.... ...+.++
T Consensus 10 l~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~---~~~~~~~~~~------~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 10 LMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNS---CPTPEFVAYY------PRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred HHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCC---CcchhHHHhc------CCCcHHHHHHHHhCCHHHHHH
Confidence 5899999999999999999987666666666676654433 2222222221 112333332222 3567889
Q ss_pred HHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCE
Q psy9575 79 ELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDI 158 (786)
Q Consensus 79 ~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v 158 (786)
|+.++|+++....+|+++ +.......+...|.+.+++.|++++.++.++++..++ + .
T Consensus 81 ~~~~~Gv~~~~~~~g~~~---------------------p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~ 137 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVF---------------------PCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-G 137 (400)
T ss_pred HHHHcCCeeEEecCCEeE---------------------CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-e
Confidence 999999998765444332 1122456789999999999999999999999997654 3 3
Q ss_pred EEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCcccccccccc----CCCCcc
Q psy9575 159 LGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVA----GAGVLI 234 (786)
Q Consensus 159 ~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~~----~~~~~~ 234 (786)
+.+.. +++ .+.|+.||+|||+++. ...+++|||+.+|.++|+.+..+ +|..+. ......
T Consensus 138 ~~v~~----~~~--~i~ad~VIlAtG~~s~------p~~gs~G~g~~la~~lG~~i~~~-----~P~l~~l~~~~~~~~~ 200 (400)
T TIGR00275 138 FGVET----SGG--EYEADKVILATGGLSY------PQLGSTGDGYEIAESLGHTIVPP-----VPALVPLTLDESFLKE 200 (400)
T ss_pred EEEEE----CCc--EEEcCEEEECCCCccc------CCCCCCcHHHHHHHHCCCCEecc-----cceEeEEEeCCccccc
Confidence 34433 232 5789999999999872 34578999999999999988643 333211 110000
Q ss_pred ccccccCCcEEEcCCCCccccccCCccC---CCCchhH--HHHHHHHHHHhcCCCCCCCCeEEEeCC-CCChhHHHhHc-
Q psy9575 235 TEGVRGEGGILINSNGERFMERYAPILK---DLAPRDF--VSRAMDQEIKEGRGCGPNKDHVMLDLR-HINSETIINRL- 307 (786)
Q Consensus 235 ~~~~~~~g~~~vn~~G~rf~~~~~p~~~---~~~~~~~--~~~~i~~~~~~g~g~~~~~~~v~ld~~-~~~~~~~~~~~- 307 (786)
..+++-.+.+.+..+|++|.++..+... -+...-+ +++.+...+..+.+ ..+.+|+. .++.+.+.+.+
T Consensus 201 l~Gv~~~~~~~~~~~~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~-----~~~~id~~p~~~~~~~~~~~~ 275 (400)
T TIGR00275 201 LSGISLDGVVLSLVNGKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKG-----VELEIDLLPDLSEEELEQRLK 275 (400)
T ss_pred CCCCcCccEEEEecCCcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCC-----cEEEEEcCCCCCHHHHHHHHH
Confidence 1122222233334556666653211100 0111111 23333333322222 24788864 44444433222
Q ss_pred --------------------hhHHHHHHhhcCCCCCCCC-----------------eeeee-------cccccccCcccC
Q psy9575 308 --------------------PSILEIGNKFANVNALKEP-----------------IPVIP-------TIHYQMGGIPTN 343 (786)
Q Consensus 308 --------------------~~~~~~~~~~~g~d~~~~~-----------------i~v~p-------~~~~t~GGi~vd 343 (786)
+.+.....+..++++.+.- +++.+ .+..|.|||.++
T Consensus 276 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt~GGv~~~ 355 (400)
T TIGR00275 276 RLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVTAGGVSLK 355 (400)
T ss_pred HHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEecCcccch
Confidence 1122222333577654321 23322 345699999998
Q ss_pred CCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHH
Q psy9575 344 IYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGN 396 (786)
Q Consensus 344 ~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~ 396 (786)
+ +|+.+|+++.+||||+|||+. +++| .+||++|.|||.+|++||+
T Consensus 356 e----i~~~~m~~k~~~gly~~GE~l--Dv~g--~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 356 E----INPKTMESKLVPGLYFAGEVL--DVDG--DTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred h----cChhhhhhcCCCCeEEEEEEE--ecCC--CCCchHHHHHHHHHHHhcC
Confidence 8 888999999999999999998 8887 4999999999999999983
No 75
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.86 E-value=1.9e-19 Score=192.88 Aligned_cols=324 Identities=17% Similarity=0.193 Sum_probs=194.2
Q ss_pred CCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHHHHHHHHHcCCCcc
Q psy9575 11 GLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKE--APKVVYELEHFGMPFD 88 (786)
Q Consensus 11 G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~--~~~~i~~l~~~Gv~~~ 88 (786)
|++|+|+||+...+..-..++||-+...+. ... ..++.. +-.+++.++..... ..+.++|+.++|+++.
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~--~~~-~~~~~~------~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~ 71 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHS--EPL-PRFIER------YGDAAEWLAPWLEAFDAVALQDWARGLGIETF 71 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCC--Cch-HHHHHh------cCCchHHHHHHHHhCCHHHHHHHHHHCCCceE
Confidence 678999999988776777778888777654 221 222211 12345555543332 4578899999999998
Q ss_pred ccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCC
Q psy9575 89 RNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMET 168 (786)
Q Consensus 89 ~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~ 168 (786)
..++|+++.. ......++.+|...+++.||+|++++.|.++ ++ +. .++.+ .+
T Consensus 72 ~e~~grvfP~---------------------S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~---~~ 123 (376)
T TIGR03862 72 VGSSGRVFPV---------------------EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFET---PD 123 (376)
T ss_pred ECCCCEECCC---------------------CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEE---CC
Confidence 8777776521 1245689999999999999999999999998 33 32 33332 22
Q ss_pred CcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCccccccccc----cCCCCcc--ccccccCC
Q psy9575 169 GNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV----AGAGVLI--TEGVRGEG 242 (786)
Q Consensus 169 g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~~----~~~~~~~--~~~~~~~g 242 (786)
+. ..++|++|||||||.+ ....+.+|+|+.+|...|..++.+ +|... .....+. -.+++...
T Consensus 124 ~~-~~~~a~~vIlAtGG~s------~p~~Gs~g~gy~la~~lGh~i~~~-----~PaL~pl~~~~~~~~~~~L~Gv~~~~ 191 (376)
T TIGR03862 124 GQ-STIEADAVVLALGGAS------WSQLGSDGAWQQVLDQRGVSVAPF-----APANCGFLVDWSAHFASRFAGEPLKR 191 (376)
T ss_pred Cc-eEEecCEEEEcCCCcc------ccccCCCcHHHHHHHHCCCcccCC-----cCeeceEEccCchhhHhhcCCCcccc
Confidence 32 2589999999999987 334467999999999999998754 23211 1000000 01122111
Q ss_pred c-EEEcC---CCCccccccCCccCCCCchh--HHHHHHHHHHHhcCCCCCCCCeEEEeCC-CCChhHHHhHch------h
Q psy9575 243 G-ILINS---NGERFMERYAPILKDLAPRD--FVSRAMDQEIKEGRGCGPNKDHVMLDLR-HINSETIINRLP------S 309 (786)
Q Consensus 243 ~-~~vn~---~G~rf~~~~~p~~~~~~~~~--~~~~~i~~~~~~g~g~~~~~~~v~ld~~-~~~~~~~~~~~~------~ 309 (786)
. +.++. .|+-.+..|. +...- .+|+.+...+..+. ...+.+|+- .++.+.+...+. .
T Consensus 192 ~~~~~~~~~~~GellFTh~G-----iSGpavl~lS~~~~~~~~~~~-----~~~i~idf~P~~~~~~l~~~l~~~~~~k~ 261 (376)
T TIGR03862 192 VNATAGTQQTRGEIVITARG-----LEGGLIYALSAALREQIKAGG-----SANLFLDLLPDLSLEQVTKRLAAPRGKQS 261 (376)
T ss_pred eEEEeCCeeEeeeEEEECCC-----ccHHHHHHHHHHHHHHHhcCC-----ceEEEEECCCCCCHHHHHHHHHhhcccch
Confidence 1 11211 0111111110 11001 12333322222211 123777753 344444433221 1
Q ss_pred HHHHHHhhcCCCCC-------------------------CCCeeeee-----cccccccCcccCCCCcccccCCCCCccc
Q psy9575 310 ILEIGNKFANVNAL-------------------------KEPIPVIP-----TIHYQMGGIPTNIYGQVIIPNNDNNKIV 359 (786)
Q Consensus 310 ~~~~~~~~~g~d~~-------------------------~~~i~v~p-----~~~~t~GGi~vd~~~~vl~~~~~~~t~I 359 (786)
+.+......|+++. .-++++.. .+..|.|||.+++ +|.+ |++..+
T Consensus 262 l~~~L~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~E----I~~~-~~Sk~~ 336 (376)
T TIGR03862 262 LSNHLRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDA----LDES-LMLKAR 336 (376)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHH----cChh-hhcccC
Confidence 11112222233210 01133322 3566999999987 7755 558999
Q ss_pred CceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 360 NGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 360 pGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
||||+|||+. +++|. +||++|.|||.+|++||++|+.++
T Consensus 337 pgLYf~GEvL--DvdG~--~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 337 PGVFCAGEML--DWEAP--TGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCeEEEEEEE--eeccC--CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 89884 999999999999999999999875
No 76
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.85 E-value=4.1e-23 Score=224.07 Aligned_cols=178 Identities=20% Similarity=0.216 Sum_probs=114.4
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCCcccccccccccccCcceEECCC--CCCCceee
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNINGKNGLACITNLNELKQPIIIRPL--PGLPVIRD 651 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG~~~laC~t~v~~~~~~~~i~p~--~~~~~~~d 651 (786)
-++++++| +|||+|+++.|| ++|.|||..+-. .+.|++|.|||||+.+.||+|++.+||.+.+.++. ......-|
T Consensus 13 ~~~~v~~G-~tiL~a~~~~gI-~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s~rvk~~r~~~md 90 (978)
T COG3383 13 RSIEVEEG-TTILRAANRNGI-EIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNSERVKEARREAMD 90 (978)
T ss_pred eEEecCCC-hHHHHHHHhcCC-cccceeccCCCCcccccceEEEEecCceeccccccccCCcEEecccHHHHHHHHHHHH
Confidence 34566677 999999999999 588899876655 48888899999999999999999999988887776 11112223
Q ss_pred e----------eecchHhHHhcccccceeecCCCCCcccc--cCChhH---HHhhhchhhCcccCcccCCCCCcccCCCC
Q psy9575 652 L----------VVDMTLFFKQFNSIKPFLITNNNPPEKER--LQSPSQ---RKILDGLYECILCGCCSTACPSFWWNSDR 716 (786)
Q Consensus 652 L----------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~ 716 (786)
+ ++|.+.-.+.++.....+....+..+... ...+.+ ....++.++||.||+||++|..++.+..
T Consensus 91 ~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaCqevqv~ea- 169 (978)
T COG3383 91 RILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEACQEVQVNEA- 169 (978)
T ss_pred HHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHHHhhhceeE-
Confidence 3 33444334445443333333322211111 122222 2445569999999999999976654321
Q ss_pred CCCHHHHHHHHHHhhcCcchhhHHH-hhhccCCCccccccccccchhhCCCCCC
Q psy9575 717 FVGPAGLLQAYRFISDSRDEATNFR-LDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 717 ~~gp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
+...++ +.+.| .+..+.+...++|++||+|++|||++-=
T Consensus 170 ------L~i~w~--------~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nAL 209 (978)
T COG3383 170 ------LTIDWR--------GEDPRVIWDNDVPINESSCVSCGACVTVCPVNAL 209 (978)
T ss_pred ------EEeecc--------cCCcceecCCCCccccccccccCccceecchhhh
Confidence 111222 11112 2233456678999999999999998754
No 77
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.83 E-value=8.2e-23 Score=203.66 Aligned_cols=137 Identities=15% Similarity=0.070 Sum_probs=88.0
Q ss_pred eeEEEEc-CCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCCcc--cccccccccccCcceEECCC--CCC
Q psy9575 573 QKFLVNL-SSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNINGKN--GLACITNLNELKQPIIIRPL--PGL 646 (786)
Q Consensus 573 ~~~~v~~-~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG~~--~laC~t~v~~~~~~~~i~p~--~~~ 646 (786)
+..+|++ ++| +|||||++++|+ .+|+|||..... .|.||+|+|||+|.. +.||+|+|++||.+.|.+|. ...
T Consensus 74 DGk~VeV~~~G-~TILeAAr~~GI-~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T~Se~v~~~R 151 (297)
T PTZ00305 74 NKRPVEIIPQE-ENLLEVLEREGI-RVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIITDSRLVRDAR 151 (297)
T ss_pred CCEEEEecCCC-ChHHHHHHHcCC-CcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEeCCHHHHHHH
Confidence 3566777 666 999999999999 699999988776 599999999999974 45999999999998887775 222
Q ss_pred CceeeeeecchHhH---------HhcccccceeecCCCCCc--ccc-cCChhHHHhhhchhhCcccCcccCCCCCcc
Q psy9575 647 PVIRDLVVDMTLFF---------KQFNSIKPFLITNNNPPE--KER-LQSPSQRKILDGLYECILCGCCSTACPSFW 711 (786)
Q Consensus 647 ~~~~dL~~d~~~~~---------~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~ 711 (786)
..+..|++..++.. ++++.+..++........ ... .....+.....+.++||+||+|+++|...+
T Consensus 152 k~vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p~i~~D~nKCIlCgRCVRaC~EVq 228 (297)
T PTZ00305 152 EGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHA 228 (297)
T ss_pred HHHHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCCceeecCCcCcCccHHHHHHHHhh
Confidence 22333333333332 334333222222211111 100 011111223344899999999999996543
No 78
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.80 E-value=9.4e-21 Score=219.94 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=90.5
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCC-CcccceEEEeCCcccccccccccccCcceEECCC--CCCCcee
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE-GVCGSDAMNINGKNGLACITNLNELKQPIIIRPL--PGLPVIR 650 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~-g~Cg~C~V~vnG~~~laC~t~v~~~~~~~~i~p~--~~~~~~~ 650 (786)
..+|++++| +|||+||+++|+ .+|+|||+..|.. |.||+|+|+|||++++||+|+|.+||.+.|.+|. ..+..+.
T Consensus 8 G~~v~~~~G-~til~aa~~~gi-~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s~~v~~~Rk~vl 85 (819)
T PRK08493 8 GKECEAQEG-EYILNVARRNGI-FIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNTPNLMDERNAIM 85 (819)
T ss_pred CEEEEeCCC-CHHHHHHHHcCC-ccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecCHHHHHHHHHHH
Confidence 345677777 899999999999 5899999999984 9999999999999989999999999998887765 1122222
Q ss_pred eeeecchHhH---------HhcccccceeecCCCCCc--ccccCChhHHHhhhchhhCcccCcccCCCCCcc
Q psy9575 651 DLVVDMTLFF---------KQFNSIKPFLITNNNPPE--KERLQSPSQRKILDGLYECILCGCCSTACPSFW 711 (786)
Q Consensus 651 dL~~d~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~ 711 (786)
.+++..+++. ++++.+...+........ ....+......+..+.++||.|++|+++||..+
T Consensus 86 e~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~~~~~~~I~~D~~rCI~C~RCVr~C~ev~ 157 (819)
T PRK08493 86 QTYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKPHKHWGKINYDPSLCIVCERCVTVCKDKI 157 (819)
T ss_pred HHHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCccccccccccCCCcEEechhhcccccHHHhhCcccc
Confidence 3333333332 333333222222221111 111111111235566999999999999998653
No 79
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.77 E-value=4.7e-20 Score=207.98 Aligned_cols=183 Identities=14% Similarity=0.169 Sum_probs=108.9
Q ss_pred eeEEEEcCCCChhHHHHHHHchhccCCCcccccCCCC-CcccceEEEeCC--cccccccccccccCcceEECCC--CCCC
Q psy9575 573 QKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE-GVCGSDAMNING--KNGLACITNLNELKQPIIIRPL--PGLP 647 (786)
Q Consensus 573 ~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~-g~Cg~C~V~vnG--~~~laC~t~v~~~~~~~~i~p~--~~~~ 647 (786)
+.-+|+++++ .|||||++++|+ ++|.|||+..|.. |.||+|+|||+| ++..||.|++.+||.+.|-+|. ....
T Consensus 7 DG~ei~v~~g-~tvLqAa~~aGi-~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk~~R~ 84 (693)
T COG1034 7 DGKEIEVPEG-ETVLQAAREAGI-DIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVKKARE 84 (693)
T ss_pred CCEEEecCCC-cHHHHHHHHcCC-CCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHHHHHH
Confidence 4456788887 899999999999 6999999999985 999999999999 5667999999999987776666 1111
Q ss_pred ceeeeeecchHhHHhc---------ccccceeecCCCCC--cccccCChhH-HHhhhchhhCcccCcccCCCCCcccCCC
Q psy9575 648 VIRDLVVDMTLFFKQF---------NSIKPFLITNNNPP--EKERLQSPSQ-RKILDGLYECILCGCCSTACPSFWWNSD 715 (786)
Q Consensus 648 ~~~dL~~d~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~CI~Cg~C~~~CP~~~~~~~ 715 (786)
-+-.+++..++++|.. |+..-.+.....++ .+........ .....++++||+|+|||++|-
T Consensus 85 ~vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~~~~~~gp~v~~dm~RCI~C~RCVR~c~------- 157 (693)
T COG1034 85 GVMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTHRDKDLGPLVKYDMNRCILCTRCVRFCK------- 157 (693)
T ss_pred HHHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCcccccccccccccccccchhhcccccceechhhHHhhh-------
Confidence 1222333333333322 22111111111111 1111111111 112256999999999999994
Q ss_pred CCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHH
Q psy9575 716 RFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSI 774 (786)
Q Consensus 716 ~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i 774 (786)
++.|-..+....| + .+.......+ ....=..||+|+++||+|.=...-.
T Consensus 158 eiaG~~~l~~~~r----g---~~~~i~t~~~---~~l~se~cGncv~vCPvGALt~K~~ 206 (693)
T COG1034 158 EIAGTHELGVIKR----G---ENSEIGTYLD---QPLESELCGNCVDVCPVGALTSKPF 206 (693)
T ss_pred hhcCccccceeec----C---CCceeecccc---cccccccccceeeeccccccccChH
Confidence 4555433322222 1 0110011111 1122289999999999997654433
No 80
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.75 E-value=3.8e-20 Score=215.20 Aligned_cols=178 Identities=12% Similarity=0.132 Sum_probs=106.6
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCCc-c--cccccccccccCcceEECCC--CCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNINGK-N--GLACITNLNELKQPIIIRPL--PGLP 647 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG~-~--~laC~t~v~~~~~~~~i~p~--~~~~ 647 (786)
..+|++++| +|||||++++|+ .+|+|||+.... .|.||+|+|||+|. + +.||+|+|.+||++.|-+|. ....
T Consensus 8 g~~v~v~~g-~til~a~~~~gi-~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v~~~r~ 85 (687)
T PRK09130 8 GKEIEVPDG-YTLLQACEAAGA-EIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMVKKARE 85 (687)
T ss_pred CEEEEeCCC-CHHHHHHHHcCC-CcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHHH
Confidence 456777787 999999999999 589999987665 58899999999986 4 45999999999999888876 1122
Q ss_pred ceeeeeecchHhH---------HhcccccceeecCCCCCcccccCChhH---HHhhhchhhCcccCcccCCCCCcccCCC
Q psy9575 648 VIRDLVVDMTLFF---------KQFNSIKPFLITNNNPPEKERLQSPSQ---RKILDGLYECILCGCCSTACPSFWWNSD 715 (786)
Q Consensus 648 ~~~dL~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~CI~Cg~C~~~CP~~~~~~~ 715 (786)
.+..+++..++.. +.++.....+..+...........+.+ ..+..++++||+|++|+++|-..
T Consensus 86 ~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev----- 160 (687)
T PRK09130 86 GVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEV----- 160 (687)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhh-----
Confidence 2223333333332 333332222222211111110000000 12334589999999999999543
Q ss_pred CCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCCh
Q psy9575 716 RFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNP 770 (786)
Q Consensus 716 ~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~ 770 (786)
.|...+....| +....+... ......|..||+|+++||+|-=.
T Consensus 161 --~g~~~l~~~~r--------g~~~~i~~~--~~~~~~~~~~G~cv~~CPvgAl~ 203 (687)
T PRK09130 161 --AGVPELGAIGR--------GEDMEITTY--LEQALTSELSGNVIDLCPVGALT 203 (687)
T ss_pred --cCCceEEeeec--------CCCCEEccC--CCCCccccccccHHhhCCCcccc
Confidence 33322222222 111111111 11234688999999999999643
No 81
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.72 E-value=2.2e-19 Score=208.36 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=107.8
Q ss_pred eeEEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCCcc---cccccccccccCcceEECCC--CCC
Q psy9575 573 QKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNINGKN---GLACITNLNELKQPIIIRPL--PGL 646 (786)
Q Consensus 573 ~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG~~---~laC~t~v~~~~~~~~i~p~--~~~ 646 (786)
+..+|++++| +|||+|++++|+ .+|+||++.... .|.|++|+|||+|.+ +.||+|+|++||.+.|.+|. ...
T Consensus 4 dg~~~~~~~g-~~il~a~~~~gi-~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r 81 (603)
T TIGR01973 4 DGKELEVPKG-TTVLQACLSAGI-EIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKAR 81 (603)
T ss_pred CCEEEEeCCC-CHHHHHHHHcCC-CccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH
Confidence 3456777787 899999999999 588999976665 588999999999964 56999999999988887665 112
Q ss_pred CceeeeeecchHhH---------HhcccccceeecCCCCC-c-cccc-CChhHHHhhhchhhCcccCcccCCCCCcccCC
Q psy9575 647 PVIRDLVVDMTLFF---------KQFNSIKPFLITNNNPP-E-KERL-QSPSQRKILDGLYECILCGCCSTACPSFWWNS 714 (786)
Q Consensus 647 ~~~~dL~~d~~~~~---------~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~ 714 (786)
..+.+|++..++.. ++++.+...+..+.... . +... .......+..+.++||+||+|+++|-.
T Consensus 82 ~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e----- 156 (603)
T TIGR01973 82 EGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANE----- 156 (603)
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHH-----
Confidence 22223333333332 33333221222211111 1 0000 000111344569999999999999944
Q ss_pred CCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChH
Q psy9575 715 DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 715 ~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~ 771 (786)
..|...+....| +...++.. .......|.+||+|+++||+|-=..
T Consensus 157 --~~g~~~l~~~~r--------g~~~~i~~--~~~~~~~~~~cg~cv~vCP~GAl~~ 201 (603)
T TIGR01973 157 --VAGVEDLGVIGR--------GNNVEIGT--YEGKTLESELSGNLIDICPVGALTS 201 (603)
T ss_pred --hhCCceEEEecc--------CCCCEEec--CCCCCCCCcccCChHhhCCcccccc
Confidence 333322222222 11111111 1112347889999999999997443
No 82
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.70 E-value=7.6e-19 Score=210.00 Aligned_cols=180 Identities=12% Similarity=0.110 Sum_probs=108.8
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCCcc--cccccccccccCcceEECCC--CCCCc
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNINGKN--GLACITNLNELKQPIIIRPL--PGLPV 648 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG~~--~laC~t~v~~~~~~~~i~p~--~~~~~ 648 (786)
.-+|++++| +|||+|++++|+ ++|.||+..... .|.|+.|+|||+|.+ +.||+|+|.+||.+.|.+|. .....
T Consensus 8 g~~~~~~~g-~~il~a~~~~g~-~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r~~ 85 (776)
T PRK09129 8 GKKVEVPEG-SMVIEAADKAGI-YIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTRSEKALKAQKS 85 (776)
T ss_pred CEEEEeCCC-CHHHHHHHHcCC-CCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcCCHHHHHHHHH
Confidence 345667777 899999999999 589999976554 588999999999965 55999999999999887775 11222
Q ss_pred eeeeeecchHh---------HHhcccccceeecCCCCCcc--cccC-ChhHHHhhhchhhCcccCcccCCCCCcccCCCC
Q psy9575 649 IRDLVVDMTLF---------FKQFNSIKPFLITNNNPPEK--ERLQ-SPSQRKILDGLYECILCGCCSTACPSFWWNSDR 716 (786)
Q Consensus 649 ~~dL~~d~~~~---------~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~ 716 (786)
+.+|++..++. .++++++...+..+...... .... ......+..+.++||+||+|+++|-.
T Consensus 86 ~l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~e------- 158 (776)
T PRK09129 86 VMEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQE------- 158 (776)
T ss_pred HHHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeecccccccCcHHHHHHHH-------
Confidence 23333333333 24444432222222211111 1100 00111233458999999999999944
Q ss_pred CCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHH
Q psy9575 717 FVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNR 772 (786)
Q Consensus 717 ~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 772 (786)
..|...+....| +.+.++... ......|..||+|+++||+|-=...
T Consensus 159 v~g~~~l~~~~r--------g~~~~i~~~--~~~~~~~~~cg~cv~~CP~GAl~~k 204 (776)
T PRK09129 159 IAGVMELGMMGR--------GEHSEITTY--VGKTVDSELSGNMIDLCPVGALTSK 204 (776)
T ss_pred hcCCceeeeecc--------CCCCEEcCC--CCCCccCcccCCchhhCCccccccc
Confidence 333332333222 111111111 1123468899999999999975443
No 83
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.69 E-value=8.1e-18 Score=200.05 Aligned_cols=181 Identities=13% Similarity=0.146 Sum_probs=106.8
Q ss_pred ceeEEEEcCCCChhHHHHHHHchhccCCCcccccCC-CCCcccceEEEeCCccc--ccccccccccCcceEE--CCC--C
Q psy9575 572 MQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSC-REGVCGSDAMNINGKNG--LACITNLNELKQPIII--RPL--P 644 (786)
Q Consensus 572 ~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~C-r~g~Cg~C~V~vnG~~~--laC~t~v~~~~~~~~i--~p~--~ 644 (786)
.+..+|++++| +|||||++++|+ .+|+|||.... ..|.|+.|+|||+|.++ .||.|+|.+||++.|. +|. .
T Consensus 9 idg~~~~~~~g-~til~aa~~~gi-~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t~~~s~~v~~ 86 (797)
T PRK07860 9 IDGVEVSVPKG-TLVIRAAELLGI-QIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKTQLTSPVADK 86 (797)
T ss_pred ECCEEEEeCCC-ChHHHHHHHcCC-CCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEeCCCCHHHHH
Confidence 34556777787 899999999999 58999997554 46999999999999754 4999999999988886 443 1
Q ss_pred CCCceeeeeecchHhH---------HhcccccceeecCCCCC--cccccCCh--hHHHhhhchhhCcccCcccCCCCCcc
Q psy9575 645 GLPVIRDLVVDMTLFF---------KQFNSIKPFLITNNNPP--EKERLQSP--SQRKILDGLYECILCGCCSTACPSFW 711 (786)
Q Consensus 645 ~~~~~~dL~~d~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~CI~Cg~C~~~CP~~~ 711 (786)
....+.+|++..++.. ++++.+...+....... .+.....+ ....+..+.++||+|++|+++|-..
T Consensus 87 ~r~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~rCI~C~rCvr~c~ev- 165 (797)
T PRK07860 87 AQHGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQVLLDRERCVLCARCTRFSDQI- 165 (797)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcceeecccccccCcHHHHHHHhh-
Confidence 1122223333333332 23333221111111111 01111000 1113445689999999999999543
Q ss_pred cCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChH
Q psy9575 712 WNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 712 ~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~ 771 (786)
.|...+....| +.+..+.. .......|.+||+|+++||+|-=..
T Consensus 166 ------~g~~~l~~~~r--------g~~~~i~~--~~~~~~~~~~cG~cv~vCP~GAl~~ 209 (797)
T PRK07860 166 ------AGDPFIDLQER--------GALQQVGI--YEGEPFQSYFSGNTVQICPVGALTG 209 (797)
T ss_pred ------cCCcEEEeeec--------CCCCEEec--CCCCCcCccccCCchhhCCcccccc
Confidence 33322222222 11111111 1123457899999999999997543
No 84
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.67 E-value=3.6e-18 Score=173.18 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=82.3
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccc-cCCCCCcccceEEEeCCcc--cccccccccccCcceEECCC--CCCCce
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLR-RSCREGVCGSDAMNINGKN--GLACITNLNELKQPIIIRPL--PGLPVI 649 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~-~~Cr~g~Cg~C~V~vnG~~--~laC~t~v~~~~~~~~i~p~--~~~~~~ 649 (786)
.+|++++| +|||+|+.++|+ .+|++++. +.|..|.||.|.|+|||.. ++||.|+|.+||.+.|..|. .....+
T Consensus 11 ~~~~~~~g-~til~a~~~~gi-~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~~~~~~~rk~~ 88 (234)
T PRK07569 11 QLVSAREG-ETLLEAAREAGI-PIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNTPRLQEYRRMI 88 (234)
T ss_pred EEEEeCCC-CHHHHHHHHcCC-CCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECCHHHHHHHHHH
Confidence 34666777 899999999998 58888875 5566899999999999964 45999999999988887664 112223
Q ss_pred eeeeecchHhH---------HhcccccceeecCCCCCcc---cccCChhHHHhhhchhhCcccCcccCCCCC
Q psy9575 650 RDLVVDMTLFF---------KQFNSIKPFLITNNNPPEK---ERLQSPSQRKILDGLYECILCGCCSTACPS 709 (786)
Q Consensus 650 ~dL~~d~~~~~---------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~CI~Cg~C~~~CP~ 709 (786)
.+++.+.++.. +.++.+..++......... ....+........+.++||.||+|+.+||.
T Consensus 89 l~~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 89 VELLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred HHHHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHH
Confidence 33333333322 2233222222111111100 000000111233447999999999999985
No 85
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.60 E-value=1.1e-16 Score=192.89 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=101.0
Q ss_pred EEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeC-----C--cccccccccccccCcceEECCC--CC
Q psy9575 576 LVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNIN-----G--KNGLACITNLNELKQPIIIRPL--PG 645 (786)
Q Consensus 576 ~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vn-----G--~~~laC~t~v~~~~~~~~i~p~--~~ 645 (786)
++++++| +|||+|+++.|+ .+|.+|+..... .|.|++|.|+|. | +..+||+|+|.+||.+.+.+|. ..
T Consensus 10 ~~~~~~g-~til~a~~~~gi-~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~gm~v~t~~~~~~~~ 87 (847)
T PRK08166 10 EYEVNGA-DNLLEACLSLGI-DIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDGTFISIDDPEAKAF 87 (847)
T ss_pred EEEeCCC-CHHHHHHHHcCC-CCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCCCEEEeCCHHHHHH
Confidence 3566676 899999999999 578888865554 588888999993 3 3556999999999988776654 11
Q ss_pred CCceeeeeecchHh---------HHhcccccceeecCCCCC--cccccC-ChhHHHhhhchhhCcccCcccCCCCCcccC
Q psy9575 646 LPVIRDLVVDMTLF---------FKQFNSIKPFLITNNNPP--EKERLQ-SPSQRKILDGLYECILCGCCSTACPSFWWN 713 (786)
Q Consensus 646 ~~~~~dL~~d~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~ 713 (786)
...+.+|++..++. .++++.+...+....... .+.... +.....+..+.++||+|++|+++|...+
T Consensus 88 r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~c~e~~-- 165 (847)
T PRK08166 88 RASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYA-- 165 (847)
T ss_pred HHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHHHHhhc--
Confidence 11222233333332 233433322222211111 111111 0111134456899999999999996543
Q ss_pred CCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCCh
Q psy9575 714 SDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNP 770 (786)
Q Consensus 714 ~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~ 770 (786)
|-..+....+ . .. ............|.+||+|+++||+|-=.
T Consensus 166 -----g~~~l~~~~~------~--~~--~~~~~~~~~~~~~~~~G~cv~vCP~GAl~ 207 (847)
T PRK08166 166 -----GGTDLGVYGA------H--DN--VYFGRPEDGTLESEFSGNLVEVCPTGVFT 207 (847)
T ss_pred -----CcceEEEeec------C--ce--eEecCCCCCcccChhhCChHhhCCchhcc
Confidence 2221111111 0 00 11111112345799999999999999643
No 86
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=99.37 E-value=1.9e-13 Score=142.10 Aligned_cols=83 Identities=20% Similarity=0.455 Sum_probs=61.3
Q ss_pred hhhchhhCcccCcccCCCCCccc-----CCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhC
Q psy9575 690 ILDGLYECILCGCCSTACPSFWW-----NSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTC 764 (786)
Q Consensus 690 ~~~~~~~CI~Cg~C~~~CP~~~~-----~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vC 764 (786)
.+.+.-.||+||+|..+||+|+. ...-|.||.+.+... +..+- ....+..+.|+.||.|.+||
T Consensus 303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~--~~~g~----------~~~~~~~~~c~lcg~C~evC 370 (459)
T COG1139 303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSP--ILGGY----------DAAGDLPYACSLCGACTEVC 370 (459)
T ss_pred HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecc--hhcch----------hhccccchhhccccCCCCcC
Confidence 55667899999999999999974 334567776543221 11111 01123468999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHh
Q psy9575 765 PKGLNPNRSINKIKELMIYR 784 (786)
Q Consensus 765 P~gi~~~~~i~~lr~~~~~~ 784 (786)
|+.||+.++|.++|+..++.
T Consensus 371 Pv~Ipl~eli~~lR~~~~~~ 390 (459)
T COG1139 371 PVKIPLPELIRKLRRVAAES 390 (459)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999887765
No 87
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.30 E-value=5e-12 Score=139.32 Aligned_cols=288 Identities=21% Similarity=0.226 Sum_probs=143.7
Q ss_pred hHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q psy9575 2 RASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYELE 81 (786)
Q Consensus 2 ~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l~ 81 (786)
.||++|++.|.+|+||||... -|+++.+-|.+ |........+..+.+....
T Consensus 18 ~aA~raa~~G~kvalvE~~~~-lGGtCln~GCI----------------------------PsK~Ll~~a~~~~~~~~~~ 68 (454)
T COG1249 18 VAAIRAAQLGLKVALVEKGER-LGGTCLNVGCI----------------------------PSKALLHAAEVIEEARHAA 68 (454)
T ss_pred HHHHHHHhCCCCEEEEeecCC-cCceEEeeCcc----------------------------ccHHHHHHHHHHHHHhhcc
Confidence 689999999999999999852 36677776643 2221111222222222222
Q ss_pred -HcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 82 -HFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 82 -~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
.+|+.+... .+. +.+.....+.....+...+...+++.||+++.++.- ++ ++ +.|
T Consensus 69 ~~~Gi~~~~~---~id---------------~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~--f~-~~-~~v-- 124 (454)
T COG1249 69 KEYGISAEVP---KID---------------FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEAR--FV-DP-HTV-- 124 (454)
T ss_pred cccceecCCC---CcC---------------HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEE--EC-CC-CEE--
Confidence 356554321 111 000000011122233444445555679999877632 21 11 221
Q ss_pred EEEEEcCCCcEEEEEeCeEEEcCCCCCccCc--cCcccCCCchHHHHHHHH-------CCCCccCCCccccccccccCCC
Q psy9575 161 VVALEMETGNIMILESKITILATGGGGRIWA--ASTNAFINTGDGLGMAAR-------AGLPLEDMEFWQFHPTGVAGAG 231 (786)
Q Consensus 161 ~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~--~~~~~~~~tGdg~~~a~~-------aGa~l~~~e~~q~~p~~~~~~~ 231 (786)
.+.+ . +...++|+.+|||||+...... ...+....+-++...... .|+.++++||.+++-. .|
T Consensus 125 -~V~~-~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~----LG 196 (454)
T COG1249 125 -EVTG-E--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAA----LG 196 (454)
T ss_pred -EEcC-C--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHH----cC
Confidence 1111 1 2357999999999999875322 111221222333222222 4777888887765411 11
Q ss_pred CccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCC-----------CCCCeEEEeCCCCCh
Q psy9575 232 VLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCG-----------PNKDHVMLDLRHINS 300 (786)
Q Consensus 232 ~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~-----------~~~~~v~ld~~~~~~ 300 (786)
. -+-+-..+.+|++..+|+ +++.+.+.+.+ .++. ...+.+.+.+..-..
T Consensus 197 ~----------~VTiie~~~~iLp~~D~e---------i~~~~~~~l~~-~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~ 256 (454)
T COG1249 197 S----------KVTVVERGDRILPGEDPE---------ISKELTKQLEK-GGVKILLNTKVTAVEKKDDGVLVTLEDGEG 256 (454)
T ss_pred C----------cEEEEecCCCCCCcCCHH---------HHHHHHHHHHh-CCeEEEccceEEEEEecCCeEEEEEecCCC
Confidence 1 133445577788755543 55666666666 3320 000012222111100
Q ss_pred hHH--------HhHchhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCcc
Q psy9575 301 ETI--------INRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVS 372 (786)
Q Consensus 301 ~~~--------~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg 372 (786)
..+ -.+-|+...+..+..|++.. ..|+|.||...+ |++||+||+||+++ +
T Consensus 257 ~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~------------~rg~I~VD~~~~---------Tnvp~IyA~GDV~~-~ 314 (454)
T COG1249 257 GTIEADAVLVAIGRKPNTDGLGLENAGVELD------------DRGFIKVDDQMT---------TNVPGIYAIGDVIG-G 314 (454)
T ss_pred CEEEeeEEEEccCCccCCCCCChhhcCceEC------------CCCCEEeCCccc---------cCCCCEEEeeccCC-C
Confidence 000 00112222111111222221 247888885554 78999999999984 3
Q ss_pred CCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 373 VHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 373 ~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.. |...+..+ |++|+++++.
T Consensus 315 ~~----Lah~A~~e----g~iaa~~i~g 334 (454)
T COG1249 315 PM----LAHVAMAE----GRIAAENIAG 334 (454)
T ss_pred cc----cHhHHHHH----HHHHHHHHhC
Confidence 32 67777777 9999999986
No 88
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=99.26 E-value=6.6e-12 Score=117.79 Aligned_cols=80 Identities=20% Similarity=0.505 Sum_probs=63.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRS 773 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~ 773 (786)
...|++||.|+++||+...+ -++|+.+++..+... .+ ....+..+|.|++|..|...||.++++.++
T Consensus 38 l~~C~QCG~CT~sCPs~r~t---~y~pR~ii~~~~~g~-------~d---~il~~~~lW~C~tCytC~eRCPr~v~i~~v 104 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFT---DYSPRKIIRKARLGL-------VD---LILSSESLWACVTCYTCTERCPRGVKIVEV 104 (195)
T ss_pred HhHhhccCcccCCCCCcccC---CCCHHHHHHHHHccc-------HH---HHhcCCcceeeeechhhhhhCCCCCCHHHH
Confidence 66799999999999998652 456887766665211 11 122344789999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy9575 774 INKIKELMIYRII 786 (786)
Q Consensus 774 i~~lr~~~~~~~~ 786 (786)
+..+|+.+++.|+
T Consensus 105 v~~lR~~a~k~G~ 117 (195)
T COG1150 105 VKALRNIAVKEGL 117 (195)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999874
No 89
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=99.19 E-value=2.7e-11 Score=134.72 Aligned_cols=95 Identities=23% Similarity=0.551 Sum_probs=74.4
Q ss_pred CChhHHHhhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchh
Q psy9575 683 QSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVD 762 (786)
Q Consensus 683 ~~~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~ 762 (786)
+.+.+....+.++.||+||.|..+||++..++.++.+|++.+..++.+.+++.... .....++.|++|+.|+.
T Consensus 11 ~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~-------~~~~~~~~C~~C~~C~~ 83 (407)
T PRK11274 11 DTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTE-------KTQLHLDRCLTCRNCET 83 (407)
T ss_pred CChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccch-------hhccccccCccccchhh
Confidence 34444445555789999999999999998888889999999888887766642111 11235789999999999
Q ss_pred hCCCCCChHHHHHHHHHHHHHh
Q psy9575 763 TCPKGLNPNRSINKIKELMIYR 784 (786)
Q Consensus 763 vCP~gi~~~~~i~~lr~~~~~~ 784 (786)
+||++|++.++|..+|..+.++
T Consensus 84 ~CP~~v~~~~li~~~r~~~~~~ 105 (407)
T PRK11274 84 TCPSGVQYGRLLDIGRKVVEEK 105 (407)
T ss_pred hCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999888876543
No 90
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=99.16 E-value=4.2e-11 Score=112.00 Aligned_cols=78 Identities=18% Similarity=0.423 Sum_probs=55.2
Q ss_pred hhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHH
Q psy9575 695 YECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSI 774 (786)
Q Consensus 695 ~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i 774 (786)
+.||+||.|+++||++... ...|+.+... ..++.. . .......+|.|++||.|..+||++|++.++|
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~---~~~~~~~~~~---~~~g~~---~----~~~~~~~~~~C~~Cg~C~~~CP~~i~~~~~i 68 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRT---SYRTRLIIRK---ALLGLK---D----EVISDDDLWMCTTCYTCQERCPRDVKITDII 68 (144)
T ss_pred ccccCCCCCcCcCCCcccc---CCCHHHHHHH---HHccch---h----hhccCCCCCcCcCcCchhhhcCCCCCHHHHH
Confidence 5899999999999997432 2234433222 222210 0 1112246799999999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy9575 775 NKIKELMIYRI 785 (786)
Q Consensus 775 ~~lr~~~~~~~ 785 (786)
..+|+.+++++
T Consensus 69 ~~~R~~~~~~g 79 (144)
T TIGR03290 69 KALRNLAAKKG 79 (144)
T ss_pred HHHHHHHHHcC
Confidence 99998887654
No 91
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.14 E-value=2.6e-11 Score=101.01 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=44.7
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccc-----cCCCCCcccceEEEeCCcc-cccccccccccCcceEECC
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLR-----RSCREGVCGSDAMNINGKN-GLACITNLNELKQPIIIRP 642 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~-----~~Cr~g~Cg~C~V~vnG~~-~laC~t~v~~~~~~~~i~p 642 (786)
-+|++++| +|||+||.++|+. +|++++. ..|..|.|+.|+|+|||++ .+||.|+|++||.+.+.+|
T Consensus 11 ~~v~~~~G-~til~al~~~gi~-ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~T~s~ 82 (82)
T PF13510_consen 11 KPVEVPPG-ETILEALLAAGID-IPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVETQSP 82 (82)
T ss_dssp EEEEEEET--BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE----
T ss_pred EEEEEcCC-CHHHHHHHHCCCe-EEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEEEeEC
Confidence 34555566 8999999999994 7789885 5578899999999999987 7899999999998877654
No 92
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=99.10 E-value=8.1e-11 Score=128.78 Aligned_cols=83 Identities=17% Similarity=0.384 Sum_probs=62.0
Q ss_pred hhchhhCcccCcccCCCCCcccCC-----CCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCC
Q psy9575 691 LDGLYECILCGCCSTACPSFWWNS-----DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCP 765 (786)
Q Consensus 691 ~~~~~~CI~Cg~C~~~CP~~~~~~-----~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP 765 (786)
+++..+||+||.|+.+||++...+ .+|.||.+..... +.++. . ......+.|+.||.|.++||
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~--~~~g~--------~--~~~~~~~~C~~Cg~C~~vCP 356 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP--LLGGY--------T--DYKHLPYLSSLCGACREVCP 356 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH--Hhccc--------c--cccccCccchhhhhhhccCC
Confidence 566899999999999999997543 3477888654322 22210 0 01124589999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhc
Q psy9575 766 KGLNPNRSINKIKELMIYRI 785 (786)
Q Consensus 766 ~gi~~~~~i~~lr~~~~~~~ 785 (786)
++|++.++|..+|+.+.+++
T Consensus 357 ~gI~~~~li~~~R~~~~~~g 376 (432)
T TIGR00273 357 VKIPLPELIREHRSDKVEKG 376 (432)
T ss_pred CCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999887653
No 93
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=98.92 E-value=1.1e-09 Score=121.66 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=59.3
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHH-HHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLL-QAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNR 772 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 772 (786)
+.+||+||.|..+||++..++. +.||..+. ...++.++. .......++.|+.||.|..+||++|++.+
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~~~-~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~C~~C~~C~~~CP~~i~~~~ 74 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVNPL-YPGPKQAGPDGERLRLKD----------GALYDESLKYCSNCKRCEVACPSGVKIGD 74 (396)
T ss_pred hhhcCCCCCCCccCCCcccCCC-CCChhhhccHHHHHhccc----------hhhcCCCCCcCcCcCccCcccCCCCCHHH
Confidence 6799999999999999987543 66776442 222221110 01223467999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy9575 773 SINKIKELMIYR 784 (786)
Q Consensus 773 ~i~~lr~~~~~~ 784 (786)
+|.++|+...++
T Consensus 75 ~i~~~r~~~~~~ 86 (396)
T PRK11168 75 IIQRARAKYVTE 86 (396)
T ss_pred HHHHHHHHHHHh
Confidence 999999877653
No 94
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.91 E-value=5.6e-08 Score=107.02 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+.+.|.+.+++.|++++.++.|+++..++ ++|.++.. .+|+...+.|+.||||||++.
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~---~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWT---RNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEe---eCCceEEEECCEEEEeCCCcc
Confidence 3456778888888999999999999998875 77766653 456556799999999999875
No 95
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.89 E-value=1.6e-08 Score=104.50 Aligned_cols=131 Identities=21% Similarity=0.273 Sum_probs=90.9
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||+.|++.|++|+|+||....+++. .+||+.. +...+ ..+.+++|
T Consensus 38 l~AA~~la~~G~~V~liEk~~~~Ggg~--~~gg~~~-------------------------~~~~v------~~~~~~~l 84 (257)
T PRK04176 38 LTAAYYLAKAGLKVAVFERKLSFGGGM--WGGGMLF-------------------------NKIVV------QEEADEIL 84 (257)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCcc--ccCcccc-------------------------ccccc------hHHHHHHH
Confidence 579999999999999999987654432 1222210 00000 11456788
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
.++|++|....+|.+ . ..+..+...|.+++++.|++++.++.+.+|+.+++++|.|
T Consensus 85 ~~~gv~~~~~~~g~~----------------------~--vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~G 140 (257)
T PRK04176 85 DEFGIRYKEVEDGLY----------------------V--ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAG 140 (257)
T ss_pred HHCCCCceeecCcce----------------------e--ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEE
Confidence 889999865322211 1 1245788899999999999999999999999875359999
Q ss_pred EEEEEcC---C---CcEEEEEeCeEEEcCCCCCc
Q psy9575 161 VVALEME---T---GNIMILESKITILATGGGGR 188 (786)
Q Consensus 161 ~~~~~~~---~---g~~~~i~AkaVVlATGG~~~ 188 (786)
+++.+.. . .+...|+||.||+|||+.+.
T Consensus 141 vv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 141 VVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred EEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 9874311 1 13457999999999998773
No 96
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.81 E-value=5.8e-06 Score=93.74 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...+...|.+.+++. |++++. ..+++++.+++++|.|+.+ .+|. .|.|+.||+|||.|.+
T Consensus 95 r~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t---~~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 95 KVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVT---QDGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred HHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEE---CCCC--EEECCEEEEccCcccC
Confidence 356778888888887 788875 5788888763389999987 4564 6899999999999965
No 97
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=98.81 E-value=3.3e-09 Score=117.54 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=56.3
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHH-HHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQA-YRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNR 772 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 772 (786)
+++||+||.|..+||++..++. |.||...... .+..+.. .......++.|+.|+.|..+||++|++.+
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~~~~-~~g~~~~~~~~~~~~l~~----------~~~~~~~~~~C~~C~~C~~~CP~~i~~~~ 72 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANPL-YPGPKQAGPDGERLRLKS----------AELYDEALKYCTNCKRCEVACPSDVKIGD 72 (397)
T ss_pred hhhCCCCCCCcccCcCccccCC-ccCcccCCcHHHHHhccc----------chhcccccccCcCcCccchhcCCCCCHHH
Confidence 6799999999999999987643 5555421000 0110000 00012357899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy9575 773 SINKIKELMIYR 784 (786)
Q Consensus 773 ~i~~lr~~~~~~ 784 (786)
+|.++|+.+.++
T Consensus 73 ~i~~~R~~~~~~ 84 (397)
T TIGR03379 73 IIARARNKYQKK 84 (397)
T ss_pred HHHHHHHHHHHc
Confidence 999999988643
No 98
>PLN02661 Putative thiazole synthesis
Probab=98.80 E-value=3.1e-08 Score=104.60 Aligned_cols=129 Identities=19% Similarity=0.315 Sum_probs=84.6
Q ss_pred ChHhhhcHhC-CCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQE-GLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYE 79 (786)
Q Consensus 1 L~AA~~aa~~-G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~ 79 (786)
|+||+.|++. |++|+||||....+|+. +.+|.+. +.-.+ +. ...++
T Consensus 105 l~AA~~La~~~g~kV~viEk~~~~GGG~-~~gg~l~--------------------------~~~vv----~~--~a~e~ 151 (357)
T PLN02661 105 LSCAYELSKNPNVKVAIIEQSVSPGGGA-WLGGQLF--------------------------SAMVV----RK--PAHLF 151 (357)
T ss_pred HHHHHHHHHcCCCeEEEEecCcccccce-eeCcccc--------------------------ccccc----cc--HHHHH
Confidence 5799999986 89999999986654432 2222111 00011 11 12357
Q ss_pred HHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCE
Q psy9575 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDI 158 (786)
Q Consensus 80 l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v 158 (786)
|+++|++|++. ++ +. ... ....++..|.+++.+ .||+++.++.+++|++++ ++|
T Consensus 152 LeElGV~fd~~-dg-y~-----------------vv~-----ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grV 206 (357)
T PLN02661 152 LDELGVPYDEQ-EN-YV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRV 206 (357)
T ss_pred HHHcCCCcccC-CC-ee-----------------Eec-----chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEE
Confidence 88999998653 22 11 111 123566788887765 699999999999999986 999
Q ss_pred EEEEEE------EcCCC---cEEEEEeCeEEEcCCCCC
Q psy9575 159 LGVVAL------EMETG---NIMILESKITILATGGGG 187 (786)
Q Consensus 159 ~G~~~~------~~~~g---~~~~i~AkaVVlATGG~~ 187 (786)
.|+++. +..++ +...|+||+||+|||+.+
T Consensus 207 aGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 207 GGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred EEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 999862 11121 345799999999999644
No 99
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.79 E-value=4.7e-09 Score=123.16 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=56.3
Q ss_pred eeEEEEcCCCChhHHHHHHHchhccCCCcccc-cCCCCCcccceEEEeCCcc--cccccccccccCcceEECC
Q psy9575 573 QKFLVNLSSNDKMLLDALHRIKYDIDDSLTLR-RSCREGVCGSDAMNINGKN--GLACITNLNELKQPIIIRP 642 (786)
Q Consensus 573 ~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~-~~Cr~g~Cg~C~V~vnG~~--~laC~t~v~~~~~~~~i~p 642 (786)
+..+|++++| +|||+||.++|+ .+|+||+. ..|..|.|+.|+|+|||.+ .+||+|++.+||.+.|.+|
T Consensus 9 dg~~~~~~~g-~ti~~a~~~~g~-~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 9 NGRSVTAAPG-TSILEAAASAGI-TIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEGMVIETENA 79 (652)
T ss_pred CCEEEEeCCc-CcHHHHHHHcCC-ccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCCCEEEeCcH
Confidence 3446777777 899999999998 58899986 4577899999999999975 5699999999998877444
No 100
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=98.78 E-value=1.3e-09 Score=84.60 Aligned_cols=56 Identities=30% Similarity=0.792 Sum_probs=25.6
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+++||+||.|+++||++.. ...+....+......... ..|.|+.||+|+.+||+||
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~-------------~~~~~~~~~~~~~~~~~~------~~~~C~~C~~C~~~CP~~I 57 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRN-------------TGRFSHPPRDRRSAVLRE------EAWSCTTCGACSEVCPVGI 57 (57)
T ss_dssp HHC--S-SHHHHCSHHHHH-------------HHHHHTSTTS--HHHHHH------HHGG-----HHHHH-TT--
T ss_pred HHHccCccChHHHChhhhc-------------ccccccCcchhHHHhhcc------cccCCcCcCCccCcCcccc
Confidence 6899999999999997531 112222222222221111 1289999999999999997
No 101
>KOG2282|consensus
Probab=98.76 E-value=1.3e-09 Score=114.69 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCcceeEEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCC--cccccccccccccCcceEECCC
Q psy9575 569 KPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNING--KNGLACITNLNELKQPIIIRPL 643 (786)
Q Consensus 569 ~~~~~~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG--~~~laC~t~v~~~~~~~~i~p~ 643 (786)
+-+.+.+.|.+++| +|||+|+..+|. .+|++||+.--. .|.|++|.|||+- +++.||..+|-.|+.+.|.+++
T Consensus 34 evfvd~~~v~v~pg-~tvlqac~~~gv-~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g~~iktns~~ 109 (708)
T KOG2282|consen 34 EVFVDDQSVMVEPG-TTVLQACAKVGV-DIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKGWKIKTNSDK 109 (708)
T ss_pred EEEECCeeEeeCCC-cHHHHHHHHhCC-CcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCCceeecCchH
Confidence 34677888999987 999999999999 588999975443 4778889999997 4667999999888777777776
No 102
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.74 E-value=7.9e-06 Score=92.81 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+.+.+. |++++ +..|++|+.++ ++|.|+.+ .+|. .|.|+.||+|||.|.+
T Consensus 100 ~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t---~dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 100 KLYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVT---QDGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEE---CCCC--EEECCEEEEeeCcchh
Confidence 45677888888766 89985 56799999886 89999987 4563 6899999999998864
No 103
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.74 E-value=9.3e-08 Score=98.45 Aligned_cols=130 Identities=25% Similarity=0.377 Sum_probs=88.7
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||+.|++.|.+|+|+||....++++ +. ||.... . + ... ....+++
T Consensus 34 L~aA~~la~~G~~V~vlEk~~~~Ggg~-~~-gg~~~~--~------------~------~~~-----------~~~~~~l 80 (254)
T TIGR00292 34 LTAAYYLAKNGLKVCVLERSLAFGGGS-WG-GGMLFS--K------------I------VVE-----------KPAHEIL 80 (254)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCccc-cC-CCccee--c------------c------ccc-----------chHHHHH
Confidence 579999999999999999987765443 22 222110 0 0 000 1234577
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCC-CEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEG-DIL 159 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g-~v~ 159 (786)
+++|+++....++.+ .. ....+...|.+++.++|++++.++.+.+|+.++++ +|.
T Consensus 81 ~~~gi~~~~~~~g~~----------------------~~--~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~ 136 (254)
T TIGR00292 81 DEFGIRYEDEGDGYV----------------------VA--DSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVA 136 (254)
T ss_pred HHCCCCeeeccCceE----------------------Ee--eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceE
Confidence 788998865332211 11 23478889999999999999999999999987622 799
Q ss_pred EEEEEEc---CCC---cEEEEEeCeEEEcCCCCC
Q psy9575 160 GVVALEM---ETG---NIMILESKITILATGGGG 187 (786)
Q Consensus 160 G~~~~~~---~~g---~~~~i~AkaVVlATGG~~ 187 (786)
|+++... ..| +...|+|+.||.|||..+
T Consensus 137 GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 137 GVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 9987321 011 346799999999999766
No 104
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.73 E-value=8.5e-08 Score=108.12 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=33.5
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.+| |++||+||+||++ ++. .+... |.-.|++|+++++.
T Consensus 280 ~G~i~vd~~~~---------Ts~~~IyA~GD~~-~~~----~l~~~----A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 280 AGAIAVDEYSR---------TSIPSIYAVGDVT-DRI----NLTPV----AIMEATCFANTEFG 325 (446)
T ss_pred CCcEEeCCCCc---------cCCCCEEEeeccC-CCc----cchhH----HHHHHHHHHHHHhc
Confidence 46688888887 9999999999998 322 24444 44448888888763
No 105
>PLN02546 glutathione reductase
Probab=98.72 E-value=2.3e-08 Score=114.55 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=33.0
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.+| |++||+||+|||+ ++.. +.. .|.-.|++++.++..
T Consensus 367 ~G~I~VD~~l~---------Ts~p~IYAaGDv~-~~~~----l~~----~A~~~g~~~a~~i~g 412 (558)
T PLN02546 367 NGAIEVDEYSR---------TSVPSIWAVGDVT-DRIN----LTP----VALMEGGALAKTLFG 412 (558)
T ss_pred CCcEeECCCce---------eCCCCEEEeeccC-CCcc----cHH----HHHHHHHHHHHHHcC
Confidence 46688888887 9999999999998 3321 333 344458888877764
No 106
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.70 E-value=8.1e-08 Score=108.87 Aligned_cols=46 Identities=22% Similarity=0.165 Sum_probs=33.3
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.+| |++||+||+|||+ +.. .+.. .|.-.|++|+.+++.
T Consensus 291 ~G~I~Vd~~~~---------t~~p~VyAiGDv~-~~~----~la~----~A~~eG~~aa~~i~g 336 (471)
T PRK06467 291 RGFIRVDKQCR---------TNVPHIFAIGDIV-GQP----MLAH----KGVHEGHVAAEVIAG 336 (471)
T ss_pred CCcEeeCCCcc---------cCCCCEEEehhhc-CCc----ccHH----HHHHHHHHHHHHHcC
Confidence 46688888777 9999999999998 222 1333 344558898888764
No 107
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.5e-07 Score=90.26 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=90.2
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||+.+|++|+||+|+|+....+|+. |. ||+... .-.++. ++-+.|
T Consensus 43 LtAAyyLAk~g~kV~i~E~~ls~GGG~-w~-GGmlf~-------------------------~iVv~~------~a~~iL 89 (262)
T COG1635 43 LTAAYYLAKAGLKVAIFERKLSFGGGI-WG-GGMLFN-------------------------KIVVRE------EADEIL 89 (262)
T ss_pred HHHHHHHHhCCceEEEEEeecccCCcc-cc-cccccc-------------------------eeeecc------hHHHHH
Confidence 689999999999999999987765553 33 333211 101111 233467
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
.+.|+++...++|.+. .....+...|..++.++|++|+..+.+.|++..++.+|+|
T Consensus 90 ~e~gI~ye~~e~g~~v------------------------~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaG 145 (262)
T COG1635 90 DEFGIRYEEEEDGYYV------------------------ADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAG 145 (262)
T ss_pred HHhCCcceecCCceEE------------------------ecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEE
Confidence 7889999876665332 1235677888889999999999999999999886238999
Q ss_pred EEEEEcC---CC---cEEEEEeCeEEEcCCC
Q psy9575 161 VVALEME---TG---NIMILESKITILATGG 185 (786)
Q Consensus 161 ~~~~~~~---~g---~~~~i~AkaVVlATGG 185 (786)
++..-.. .+ +...++|+.||-|||-
T Consensus 146 vVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 146 VVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred EEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 9873211 11 2357999999999994
No 108
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=98.69 E-value=2e-08 Score=111.38 Aligned_cols=84 Identities=21% Similarity=0.475 Sum_probs=67.6
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHH
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNR 772 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 772 (786)
...+|++||.|.++||++... +..+|+......+..+.......... ....|.|+.|+.|++.||.+|++.+
T Consensus 7 ~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~~~~~------~~~~~~C~~C~~C~~~CP~~i~~~~ 78 (388)
T COG0247 7 SLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPGDEEV------YEALDTCLACGACATACPSGIDIGD 78 (388)
T ss_pred HHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcchhhh------HHHHHhCcCccchHhhCCCCCcHHH
Confidence 368999999999999999765 68899988888887666543311111 1146899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy9575 773 SINKIKELMIYR 784 (786)
Q Consensus 773 ~i~~lr~~~~~~ 784 (786)
++..+|+...+.
T Consensus 79 ~~~~~r~~~~~~ 90 (388)
T COG0247 79 LIREARRKLAKG 90 (388)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 109
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.68 E-value=5.6e-08 Score=109.50 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=32.4
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHIL 399 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa 399 (786)
.|.|.||+..| |++||+||+||++ +.. .+. ..|.-.|++|+++++
T Consensus 282 ~G~i~vd~~~~---------T~~p~IyAiGD~~-~~~----~~~----~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 282 KGQIIVDEYQN---------TNVPGIYALGDVV-GKV----ELT----PVAIAAGRKLSERLF 326 (450)
T ss_pred CCcEEeCCCCc---------CCCCCEEEEEecC-CCc----ccH----HHHHHHHHHHHHHHh
Confidence 46678887776 9999999999998 332 122 344556888888876
No 110
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.67 E-value=1e-06 Score=94.78 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 125 ALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 125 ~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+.+.+.+.+++ .+++++ +.+|++|+.++ ++|.||.+ .+|+ .|.|+.||+|||.|.+-
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~---~~g~--~~~a~~vVlaTGtfl~G 154 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVT---KDGE--EIEADAVVLATGTFLNG 154 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEE---TTSE--EEEECEEEE-TTTGBTS
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEe---CCCC--EEecCEEEEecccccCc
Confidence 556677777777 489986 57899999997 99999988 5675 68999999999997643
No 111
>PTZ00058 glutathione reductase; Provisional
Probab=98.66 E-value=2.8e-08 Score=113.74 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCe
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGI 34 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi 34 (786)
++||+.|++.|++|+||||..+ |+++.+.|.+
T Consensus 61 ~~aA~~aa~~G~~ValIEk~~~--GGtCln~GCi 92 (561)
T PTZ00058 61 MAAARRAARNKAKVALVEKDYL--GGTCVNVGCV 92 (561)
T ss_pred HHHHHHHHHcCCeEEEEecccc--cccccccCCC
Confidence 3689999999999999999754 6677777654
No 112
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.66 E-value=8.5e-08 Score=110.45 Aligned_cols=177 Identities=13% Similarity=0.055 Sum_probs=100.8
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCC--CHHHHH------HHH----HHhcCCC--CcHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKD--NWHWHM------FDT----IKGSDYL--GDQDAI 66 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d--~~~~~~------~d~----~~~~~~~--~~~~~v 66 (786)
+++|+.|+++|++|+||||..+..|.|+.+.|.+.........+ .....+ ..+ +....++ ..++.
T Consensus 19 ~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~~~~g~l~~~~~~~- 97 (546)
T PRK11101 19 AGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPED- 97 (546)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhhcccCCceEEeccc-
Confidence 46899999999999999998876666666665544322211011 111111 110 0000100 00000
Q ss_pred HHHHHHHHHHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecC--CcHHHHHHHHHHHHhcCCceEEec
Q psy9575 67 EFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD--RTGHALLHTLYQRNLHAKTNFFIE 144 (786)
Q Consensus 67 ~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~~g~~i~~~L~~~~~~~Gv~i~~~ 144 (786)
. .......++++.+.|++.......+.. ..++.... ......+..+ -....++.++...++++|++++++
T Consensus 98 -~-~~~~~~~~~~~~~~Gi~~~~l~~~e~~-~~eP~l~~-----~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~ 169 (546)
T PRK11101 98 -D-LAFQATFIRACEEAGIEAEAIDPQQAL-ILEPAVNP-----ALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTY 169 (546)
T ss_pred -c-HHHHHHHHHHHHHcCCCcEEECHHHHH-HhCCCcCc-----cceEEEEecCcEECHHHHHHHHHHHHHhCCCEEEec
Confidence 0 011122344556677765432111111 11111100 0011111111 134678888999999999999999
Q ss_pred eEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 145 WMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 145 ~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
++|++|.+++ ++|+|+.+.+..+|+...|+|+.||+|||.|+
T Consensus 170 t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 170 HEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred cEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 9999999986 89999998876666656799999999999886
No 113
>PLN02507 glutathione reductase
Probab=98.64 E-value=4.4e-07 Score=103.37 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=33.8
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.+| |++||+||+|||+ ++.. +.. .|.-.|++|+.+++.
T Consensus 317 ~G~I~Vd~~~~---------Ts~p~IyAiGDv~-~~~~----l~~----~A~~qg~~aa~ni~g 362 (499)
T PLN02507 317 AGAVKVDEYSR---------TNIPSIWAIGDVT-NRIN----LTP----VALMEGTCFAKTVFG 362 (499)
T ss_pred CCcEecCCCCc---------CCCCCEEEeeEcC-CCCc----cHH----HHHHHHHHHHHHHcC
Confidence 46788988887 9999999999998 3332 333 344458888888753
No 114
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=98.63 E-value=1.5e-08 Score=106.89 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=33.2
Q ss_pred CCCccccccccccchhhCCCCCChHHHHHHHHHHHHH
Q psy9575 747 DPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783 (786)
Q Consensus 747 ~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~ 783 (786)
+..+.+.|+.||+|+.+||++|++.++|..+|+.+.+
T Consensus 302 ~~~g~~~CvgCGrC~~~CP~~I~i~~~i~~lr~~~~~ 338 (344)
T PRK15055 302 KRFGYHMCVGCGRCDDRCPEYISFSNCINKLTDAVEE 338 (344)
T ss_pred cccchhhCcCcCccccccCCCCCHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999999987765
No 115
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.60 E-value=6.1e-07 Score=101.69 Aligned_cols=45 Identities=31% Similarity=0.482 Sum_probs=32.5
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHIL 399 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa 399 (786)
.|.|.||+.+| |++||+||+||++ +.. .+...+. -.|++|+.++.
T Consensus 291 ~G~i~Vd~~~~---------Ts~~~IyA~GD~~-~~~----~l~~~A~----~~g~~aa~~i~ 335 (466)
T PRK07845 291 SGHITVDRVSR---------TSVPGIYAAGDCT-GVL----PLASVAA----MQGRIAMYHAL 335 (466)
T ss_pred CCcEeECCCcc---------cCCCCEEEEeecc-CCc----cchhHHH----HHHHHHHHHHc
Confidence 46688888777 9999999999998 332 2444444 44888887775
No 116
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.58 E-value=5.3e-07 Score=102.34 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=33.5
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|+|.||+..| |++||+||+||++. +. +.+.. .|.-.|++|+++++.
T Consensus 297 ~G~I~Vd~~~~---------Ts~p~IyA~GDv~~-~~---~~l~~----~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 297 TGKIPADEEEQ---------TNVPYIYAVGDILE-DK---QELTP----VAIQAGRLLAQRLFS 343 (484)
T ss_pred CCeEecCCCcc---------cCCCCEEEEEEecC-CC---ccchH----HHHHHHHHHHHHHhc
Confidence 36788988877 99999999999982 21 12332 355558888888763
No 117
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.58 E-value=1.1e-06 Score=93.61 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=55.0
Q ss_pred ecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccC
Q psy9575 118 VADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIW 190 (786)
Q Consensus 118 ~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~ 190 (786)
.+...-..+++.+.+.++++|++|+++|+|.++..++ +.+.++.. .+|+ .|.|+.||||.|-.++.|
T Consensus 167 iGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~---~~g~--~i~~~~vvlA~Grsg~dw 233 (486)
T COG2509 167 IGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKL---TKGE--EIEADYVVLAPGRSGRDW 233 (486)
T ss_pred cCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEc---cCCc--EEecCEEEEccCcchHHH
Confidence 3333446788999999999999999999999999986 77777776 4564 689999999999877654
No 118
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=4.7e-07 Score=102.35 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=32.7
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+..| |++||+||+||++ ++. .+. ..|.-.|++|+++++.
T Consensus 282 ~G~i~vd~~~~---------Ts~~~IyA~GD~~-~~~----~~~----~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 282 KGYIIVDEYQN---------TNVPGIYAVGDVT-GRV----ELT----PVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcEecCCCCC---------cCCCCEEEEeecC-CCc----CcH----HHHHHHHHHHHHHHhC
Confidence 35588887777 9999999999998 332 122 3455558888888764
No 119
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=98.57 E-value=1.2e-08 Score=80.29 Aligned_cols=61 Identities=30% Similarity=0.722 Sum_probs=31.3
Q ss_pred hCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 696 ~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
+|++||.|+.+||++..++.+ |..+...+.. +. .........++.|+.||.|..+||.+||
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~---~~~~~~~~~~---~~-------~~~~~~~~~~~~C~~Cg~C~~~CP~~l~ 61 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDE---PRSPMRAIYL---GK-------IDEISESHAASLCIGCGLCESVCPQGLD 61 (61)
T ss_dssp T----STTGGGSHHHHHCTTT---HHHHHHHHHH---CH-------CHTTHHHTTTTT--S--HHHHH-TT---
T ss_pred CCCCCCcCcccCCCccccCcc---HHHHHHHHHH---hc-------chhhhhCcccccCcCcCcCcccccCCCc
Confidence 599999999999998765432 6655554443 10 0111111467999999999999999986
No 120
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.57 E-value=4.1e-07 Score=103.05 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=31.3
Q ss_pred cCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 338 GGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 338 GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
+|+.+|++++ |++||+||+|||++ +. .++..+.. .|++|+++++.
T Consensus 293 ~G~~vd~~~~---------Ts~~~IyA~GD~~~-~~----~la~~A~~----~g~~aa~~i~~ 337 (466)
T PRK06115 293 RGMLANDHHR---------TSVPGVWVIGDVTS-GP----MLAHKAED----EAVACIERIAG 337 (466)
T ss_pred CCEEECCCee---------cCCCCEEEeeecCC-Cc----ccHHHHHH----HHHHHHHHHcC
Confidence 4566776666 99999999999983 32 24444433 48888888764
No 121
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.52 E-value=6.9e-08 Score=101.27 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=33.6
Q ss_pred cCCCccccccccccchhhCCCCCChHHHHHHHHHHHHH
Q psy9575 746 EDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783 (786)
Q Consensus 746 ~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~ 783 (786)
.+..+...|+.||+|+.+||++|++.++|..+|..+.+
T Consensus 295 ~~~fG~~~CvgCGrC~~~CP~~idi~~~i~~i~~~~~~ 332 (334)
T TIGR02910 295 KKRNGYHMCVGCGRCDDICPEYISFSNCINKLTAAVRE 332 (334)
T ss_pred ccccCccccCCcCchhhhCCCCCCHHHHHHHHHHHHhc
Confidence 35668889999999999999999999999999987653
No 122
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.48 E-value=5.3e-07 Score=103.63 Aligned_cols=174 Identities=17% Similarity=0.133 Sum_probs=100.1
Q ss_pred hhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCC--HHH------HHHHH----HHhcCCCC---cHHHHHH
Q psy9575 4 SLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDN--WHW------HMFDT----IKGSDYLG---DQDAIEF 68 (786)
Q Consensus 4 A~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~--~~~------~~~d~----~~~~~~~~---~~~~v~~ 68 (786)
|..|++.|++|+||||+....|.|+.+.|.+.........+. ... .+.++ .....++. +.+-.
T Consensus 1 ArdLa~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~~~~~~g~L~va~~~~~~-- 78 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARHCVEDTGGLFITLPEDDL-- 78 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChHhccCCCceEEecCcccH--
Confidence 678999999999999998877777777766543322111111 110 01111 01111111 11100
Q ss_pred HHHHHHHHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecC--CcHHHHHHHHHHHHhcCCceEEeceE
Q psy9575 69 MCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD--RTGHALLHTLYQRNLHAKTNFFIEWM 146 (786)
Q Consensus 69 ~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~~g~~i~~~L~~~~~~~Gv~i~~~~~ 146 (786)
......++.+.+.|++...-...+.. ..+..... ......+..+ .....++..|.+.++++|++|+++++
T Consensus 79 --~~~~~~~~~~~~~gi~~~~l~~~e~~-~~~P~l~~-----~~~ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~ 150 (516)
T TIGR03377 79 --EFQKQFLAACREAGIPAEEIDPAEAL-RLEPNLNP-----DLIGAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTK 150 (516)
T ss_pred --HHHHHHHHHHHHCCCCceEECHHHHH-HHCCCCCh-----hheEEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcE
Confidence 11122344445567764322111111 11111100 0001111111 13567889999999999999999999
Q ss_pred EEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 147 AIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 147 v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
|+++.+++ ++|.|+.+.+..+|+...|+|+.||+|||.|+.
T Consensus 151 V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 151 VTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred EEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 99999886 889999887766676668999999999998873
No 123
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.46 E-value=2.6e-07 Score=104.60 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=32.9
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+..| |++||+||+|||+ ++. .+... |.-.|++|+++++.
T Consensus 305 ~G~I~Vd~~l~---------Ts~~~IyA~GDv~-~~~----~l~~~----A~~qG~~aa~ni~g 350 (486)
T TIGR01423 305 KGAIQVDEFSR---------TNVPNIYAIGDVT-DRV----MLTPV----AINEGAAFVDTVFG 350 (486)
T ss_pred CCCEecCCCCc---------CCCCCEEEeeecC-CCc----ccHHH----HHHHHHHHHHHHhC
Confidence 46688888777 9999999999998 322 13333 45558888888763
No 124
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=98.45 E-value=1.4e-07 Score=104.94 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=52.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRS 773 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~ 773 (786)
.+.||.||.|+.+||+. +.|..+..... ..+ .... ...+.+.|+.||.|..+||.+|++.++
T Consensus 362 ~~~Ci~Cg~C~~vCP~~-------l~p~~l~~~~~---~~~-------~~~~-~~~~~~~C~~Cg~C~~vCP~~i~l~~~ 423 (435)
T TIGR01945 362 EKPCIRCGKCVQVCPMN-------LLPQQLNWLAL---ADE-------FDEA-EEHNLMDCIECGCCSYVCPSNIPLVQY 423 (435)
T ss_pred CCcCcCccchhhhCccc-------hhhHHHHHHhh---hcc-------cchh-hcCCCCcCCcCCCcccccCCCCCHHHH
Confidence 68999999999999974 22443322211 110 0011 123568999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy9575 774 INKIKELMIYR 784 (786)
Q Consensus 774 i~~lr~~~~~~ 784 (786)
|...|+.+.++
T Consensus 424 ir~~k~~l~~~ 434 (435)
T TIGR01945 424 IRQAKAKLRAK 434 (435)
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 125
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.43 E-value=2.5e-06 Score=93.19 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=94.6
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeecc-CCCCCC-CHH-------HHHHHHHHhcC--C---------C
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASL-GNMSKD-NWH-------WHMFDTIKGSD--Y---------L 60 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~-~~~~~d-~~~-------~~~~d~~~~~~--~---------~ 60 (786)
+++|++|++.|.+|+|+|++.+..+.|..+. |+.... .. ..+ ... ..+.++..... . +
T Consensus 12 ~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~-g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 89 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERGDIGSGASGRSG-GLVRPGISS-YPDPQYARLARESVEFWRELAEEYGIPVGFRPCGSLYL 89 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESSSTTSSGGGSSS-EEEECSGSH-HSSHHHHHHHHHHHHHHHHHHHHTTSSCEEEECEEEEE
T ss_pred HHHHHHHHHCCCeEEEEeecccccccccccc-ccccccccc-cccccccchhhhhccchhhhhhhcCccccccccccccc
Confidence 4799999999999999999966655565554 444332 10 011 000 11112211110 0 0
Q ss_pred C-cHHHHHHHHHHHHHHHHHHHHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecC---CcHHHHHHHHHHHHhc
Q psy9575 61 G-DQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD---RTGHALLHTLYQRNLH 136 (786)
Q Consensus 61 ~-~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~---~~g~~i~~~L~~~~~~ 136 (786)
. ++... +......+.+.++|+++......++.. .+.... .......+..+ -....++..|.+.+++
T Consensus 90 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~-----~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~ 159 (358)
T PF01266_consen 90 AEDEEDA----ESLERLLDRLRRNGIPYELLSPEELRE-LFPFLN-----PRIEGGVFFPEGGVIDPRRLIQALAAEAQR 159 (358)
T ss_dssp ESSHHHH----HHHHHHHHHHHHTTTTEEEEEHHHHHH-HSTTSS-----TTTEEEEEETTEEEEEHHHHHHHHHHHHHH
T ss_pred ccchhhh----hhccccccccccccccccccchhhhhh-hhcccc-----cchhhhhcccccccccccchhhhhHHHHHH
Confidence 0 12221 222344556666777544321111111 111000 00111111111 1357899999999999
Q ss_pred CCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 137 AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 137 ~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.|++|+++++|++|..++ ++|.|+.+ .+| .++|+.||+|+|.++.
T Consensus 160 ~Gv~i~~~~~V~~i~~~~-~~v~gv~~---~~g---~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 160 AGVEIRTGTEVTSIDVDG-GRVTGVRT---SDG---EIRADRVVLAAGAWSP 204 (358)
T ss_dssp TT-EEEESEEEEEEEEET-TEEEEEEE---TTE---EEEECEEEE--GGGHH
T ss_pred hhhhccccccccchhhcc-cccccccc---ccc---ccccceeEecccccce
Confidence 999999999999999997 88888887 556 3899999999997663
No 126
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.43 E-value=1.2e-06 Score=85.08 Aligned_cols=130 Identities=21% Similarity=0.308 Sum_probs=79.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||+.||++|+||+|+|+....+|+. |. ||+... . + ...+ +....|
T Consensus 30 l~aA~~La~~g~kV~v~E~~~~~GGg~-~~-Gg~lf~--~------------i------VVq~-----------~a~~iL 76 (230)
T PF01946_consen 30 LTAAYYLAKAGLKVAVIERKLSPGGGM-WG-GGMLFN--K------------I------VVQE-----------EADEIL 76 (230)
T ss_dssp HHHHHHHHHHTS-EEEEESSSS-BTTT-TS--CTT-----------------E------EEET-----------TTHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCCCccc-cc-cccccc--h------------h------hhhh-----------hHHHHH
Confidence 579999999999999999987655442 22 332110 0 0 0000 112356
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILG 160 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G 160 (786)
.++|+++....+|.+. ..+...+..|..++.++|++|+..+.+.||+..++++|.|
T Consensus 77 ~elgi~y~~~~~g~~v------------------------~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~G 132 (230)
T PF01946_consen 77 DELGIPYEEYGDGYYV------------------------ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAG 132 (230)
T ss_dssp HHHT---EE-SSEEEE------------------------S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEE
T ss_pred HhCCceeEEeCCeEEE------------------------EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEE
Confidence 7789998765443221 1345677888888888999999999999999875479999
Q ss_pred EEEEEc---CC---CcEEEEEeCeEEEcCCCCC
Q psy9575 161 VVALEM---ET---GNIMILESKITILATGGGG 187 (786)
Q Consensus 161 ~~~~~~---~~---g~~~~i~AkaVVlATGG~~ 187 (786)
++.... .. =+...|+||.||-|||--+
T Consensus 133 vViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 133 VVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp EEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 987431 01 1346799999999999544
No 127
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.42 E-value=1.9e-06 Score=95.68 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+.+.|++++++.|++++.++.+++++.++ +.+++.+. . +. ..++||.||.|+|--+
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~---~-~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVR---A-GD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEE---c-CC-EEEEcCEEEECCCcch
Confidence 3567789999999999999999999999987 44444433 1 22 5799999999998544
No 128
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=2.2e-06 Score=96.98 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=34.1
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.+||.||+..| |++||+||+||++ ++. .++. .|...|++|+.+++.
T Consensus 284 ~~gi~Vd~~~~---------ts~~~VyA~GD~~-~~~----~la~----~A~~~g~~aa~~~~g 329 (458)
T PRK06912 284 NKGISVNEHMQ---------TNVPHIYACGDVI-GGI----QLAH----VAFHEGTTAALHASG 329 (458)
T ss_pred CCCEEeCCCee---------cCCCCEEEEeecC-CCc----ccHH----HHHHHHHHHHHHHcC
Confidence 46799998887 9999999999998 332 2333 345559999888763
No 129
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.41 E-value=1.4e-07 Score=109.02 Aligned_cols=72 Identities=25% Similarity=0.534 Sum_probs=49.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRS 773 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~ 773 (786)
...||+||.|+.+||+.. -|..+....+ ..+ .+ .. ...+++.|+.||.|..+||.+|++.++
T Consensus 369 e~~CI~CG~Cv~aCP~~l-------lP~~l~~~~~----~~d--~~-~~----~~~~~~~CieCG~C~~vCPs~Iplv~~ 430 (695)
T PRK05035 369 EQPCIRCGACADACPASL-------LPQQLYWFAK----AEE--HD-KA----QEYNLFDCIECGACAYVCPSNIPLVQY 430 (695)
T ss_pred hhhcCCcccHHHHCCccc-------hhhhHHHhhh----ccc--cc-hh----hhcChhhccccCcccccCCCCCcHHHH
Confidence 579999999999999852 2332222111 100 00 01 123567899999999999999999999
Q ss_pred HHHHHHHHHH
Q psy9575 774 INKIKELMIY 783 (786)
Q Consensus 774 i~~lr~~~~~ 783 (786)
+...|..+..
T Consensus 431 ~r~aK~~i~~ 440 (695)
T PRK05035 431 YRQAKAEIRA 440 (695)
T ss_pred HHHHHHHHHH
Confidence 9998876544
No 130
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=98.40 E-value=2e-07 Score=102.62 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccc--cccchhhCCCCCChH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS--IMNCVDTCPKGLNPN 771 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~C~~vCP~gi~~~ 771 (786)
...||+||+|+++||+. +-|..+.++... . . .+.. ...++..|.. ||.|+.|||+.|++.
T Consensus 373 ~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~---~----d---~~~~-e~~~~~~C~EedCG~CsyVCPskipL~ 434 (448)
T PRK05352 373 ERAMVPIGNYERVMPLD-------ILPTQLLRALIV---G----D---TDEA-QALGALELDEEDLALCTFVCPGKYEYG 434 (448)
T ss_pred CcceeecCcHhhcCCCC-------CCHHHHHHHHHc---C----C---HHHH-HHcCchhcCccccCCCccCCCCCchHH
Confidence 57899999999999983 457766665542 1 1 1111 1247899999 999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy9575 772 RSINKIKELMIYR 784 (786)
Q Consensus 772 ~~i~~lr~~~~~~ 784 (786)
+.|...+..+.+.
T Consensus 435 q~iR~~k~~~~~e 447 (448)
T PRK05352 435 PILRDGLDRIEKE 447 (448)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887664
No 131
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=98.38 E-value=3e-07 Score=105.33 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=54.0
Q ss_pred HHhhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 688 RKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 688 ~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.+..++.++|++||.|+.+||.... +....+...++... .+. ...+.|+.||+|.++||++
T Consensus 397 eEl~~eadrCI~CG~Cv~aCP~~l~----------i~~~I~~a~~G~~~----~l~-----~l~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 397 EELKELAKKCTECGWCVRVCPNELP----------IPEAMEAAAKGDLS----KLE-----DLYDKCIGCGRCEQVCPKN 457 (781)
T ss_pred HHHHHhhhhCcCCCCccccCCCCcc----------hhHHHHHHhcCChh----hhh-----hhhhhccchhHHhhhCCCC
Confidence 3455558899999999999997421 01112211111100 000 1247899999999999999
Q ss_pred CChHHHHHHHHHHHHHhc
Q psy9575 768 LNPNRSINKIKELMIYRI 785 (786)
Q Consensus 768 i~~~~~i~~lr~~~~~~~ 785 (786)
|++.+++..+|+.+++..
T Consensus 458 Ipi~emi~~Ar~~~Vk~~ 475 (781)
T PRK00941 458 IPIVSMIEKAAQHRIKNE 475 (781)
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 999999999999888753
No 132
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.37 E-value=2.3e-06 Score=97.02 Aligned_cols=57 Identities=16% Similarity=0.048 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...++..|.+.+++.||+|+++++|+++.. +..+.+.+ .+| .|+|+.||+|||+|+.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t---~~g---~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRT---PDG---QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEe---CCc---EEECCEEEEccccccc
Confidence 467899999999999999999999999864 22333433 455 4899999999999864
No 133
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=4.1e-06 Score=95.25 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=33.4
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.++ |++||+||+||++ ++. .+ ...|.-.|++||++++.
T Consensus 301 ~G~i~vd~~~~---------Ts~~~VyA~GD~~-~~~----~~----~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 301 RGFIPVDDHCR---------TNVPNVYAIGDVV-RGP----ML----AHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCeEeECCCCc---------cCCCCEEEEEecc-CCc----ch----HHHHHHHHHHHHHHHcC
Confidence 46688887776 9999999999998 322 12 34455568898888763
No 134
>KOG0405|consensus
Probab=98.37 E-value=5.8e-07 Score=91.64 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=44.6
Q ss_pred HHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHH--
Q psy9575 132 QRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAAR-- 209 (786)
Q Consensus 132 ~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~-- 209 (786)
+-+.+.+|+++++.. .+..+ +.| .++..+|+.+.+.|+.+.+||||..-...-.....+.+.||+.-...
T Consensus 118 ~~L~k~~V~~i~G~a--~f~~~--~~v----~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~P 189 (478)
T KOG0405|consen 118 RNLAKAAVKLIEGRA--RFVSP--GEV----EVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQP 189 (478)
T ss_pred hhccccceeEEeeeE--EEcCC--Cce----EEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcC
Confidence 344456888887662 12222 332 23346776677999999999999873221111123445555544332
Q ss_pred -----CCCCccCCCcc
Q psy9575 210 -----AGLPLEDMEFW 220 (786)
Q Consensus 210 -----aGa~l~~~e~~ 220 (786)
.||.++..||.
T Consensus 190 kr~vvvGaGYIavE~A 205 (478)
T KOG0405|consen 190 KRVVVVGAGYIAVEFA 205 (478)
T ss_pred ceEEEEccceEEEEhh
Confidence 35555555543
No 135
>PRK06370 mercuric reductase; Validated
Probab=98.35 E-value=2.2e-06 Score=97.30 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=33.5
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+..| |++||+||+||++ +.. .+.. .|.-.|++|+++++.
T Consensus 288 ~G~i~vd~~l~---------t~~~~IyAiGD~~-~~~----~~~~----~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 288 RGYIKVDDQLR---------TTNPGIYAAGDCN-GRG----AFTH----TAYNDARIVAANLLD 333 (463)
T ss_pred CCcEeECcCCc---------CCCCCEEEeeecC-CCc----ccHH----HHHHHHHHHHHHHhC
Confidence 46688888877 9999999999998 332 2333 344458888888764
No 136
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=98.33 E-value=5.2e-07 Score=99.13 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=54.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccc--cccchhhCCCCCChH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS--IMNCVDTCPKGLNPN 771 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--Cg~C~~vCP~gi~~~ 771 (786)
...||+||+|+++||+. +-|..+.++.+. .+-+. ....++..|.. ||.|+.|||..|++.
T Consensus 372 ~~aCI~CG~C~~vCPm~-------L~P~~L~~a~~~-------~d~d~----a~~lg~~ecieedCG~CsyVCPSki~l~ 433 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLD-------IPPTLLLKALIA-------GDFDK----AQRLGALEVDEEDFALCTFVDPSKYEYG 433 (447)
T ss_pred ccceeECChHhhcCCCC-------CCHHHHHHHHHc-------CCHHH----HHHCCCcccCccccccCceECCCCchHH
Confidence 56899999999999984 447666655541 11111 12347889998 999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy9575 772 RSINKIKELMIYR 784 (786)
Q Consensus 772 ~~i~~lr~~~~~~ 784 (786)
+.|...-..+.+.
T Consensus 434 q~iR~~l~~~~~e 446 (447)
T TIGR01936 434 SIVRESLDRIEKE 446 (447)
T ss_pred HHHHHHHHHHHhc
Confidence 9998877666553
No 137
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.33 E-value=4.5e-06 Score=94.79 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=34.0
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.+| |++||+||+||++ +.. .++.. |.-.|++|+++++.
T Consensus 290 ~g~i~vd~~~~---------Ts~p~IyAiGD~~-~~~----~l~~~----A~~~g~~aa~~i~g 335 (466)
T PRK07818 290 RGAIAIDDYMR---------TNVPHIYAIGDVT-AKL----QLAHV----AEAQGVVAAETIAG 335 (466)
T ss_pred CCcEeeCCCcc---------cCCCCEEEEeecC-CCc----ccHhH----HHHHHHHHHHHHcC
Confidence 46688888887 9999999999998 332 23333 44559999988874
No 138
>PRK07846 mycothione reductase; Reviewed
Probab=98.32 E-value=8e-06 Score=92.09 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=32.9
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+++| |++||+||+||+++ .. .++.. |.-.|++++++++.
T Consensus 279 ~G~i~Vd~~~~---------Ts~p~IyA~GD~~~-~~----~l~~~----A~~~g~~~a~ni~~ 324 (451)
T PRK07846 279 DGRVVVDEYQR---------TSAEGVFALGDVSS-PY----QLKHV----ANHEARVVQHNLLH 324 (451)
T ss_pred CCcEeECCCcc---------cCCCCEEEEeecCC-Cc----cChhH----HHHHHHHHHHHHcC
Confidence 46688888777 99999999999983 22 24443 34448888888763
No 139
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.31 E-value=4.4e-06 Score=94.87 Aligned_cols=46 Identities=24% Similarity=0.160 Sum_probs=33.8
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+..| |++||+||+||++ ++. .++ ..|.-.|++|+.+++.
T Consensus 288 ~g~i~vd~~~~---------t~~~~VyAiGD~~-~~~----~~~----~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 288 RGFIEVDEQLR---------TNVPNIYAIGDIV-GGP----MLA----HKASAEGIIAAEAIAG 333 (462)
T ss_pred CCEEeECCCCc---------cCCCCEEEeeecC-CCc----chH----HHHHHHHHHHHHHHcC
Confidence 46688888887 9999999999998 222 122 3455558888888874
No 140
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.31 E-value=4.7e-07 Score=97.70 Aligned_cols=70 Identities=21% Similarity=0.417 Sum_probs=50.5
Q ss_pred hCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHHHH
Q psy9575 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSIN 775 (786)
Q Consensus 696 ~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~ 775 (786)
.||+|+.|+++||++ +-|..+....+. +...+... +....|..||.|..+||++|++.+++.
T Consensus 366 sCi~C~~C~d~CP~~-------Llp~ql~~~a~~-----~~~~e~~~------~~l~dCIECg~Ca~vCPs~iplvq~~r 427 (529)
T COG4656 366 SCIRCSLCADACPVN-------LLPQQLYWFAKG-----EQHDEEEE------HNLLDCIECGACAYVCPSNIPLVQYFR 427 (529)
T ss_pred ccccHHHHHHhCccc-------cCHHHhhHHhhh-----hhhhHHHH------HHhhhhhhhCcchhcCCCCCCHHHHHH
Confidence 899999999999995 335434333332 11111111 246789999999999999999999998
Q ss_pred HHHHHHHH
Q psy9575 776 KIKELMIY 783 (786)
Q Consensus 776 ~lr~~~~~ 783 (786)
..++++..
T Consensus 428 ~~Ka~i~~ 435 (529)
T COG4656 428 QEKAEILA 435 (529)
T ss_pred HHHHHHHH
Confidence 88876654
No 141
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.30 E-value=4.5e-06 Score=97.13 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=24.6
Q ss_pred hHhhhcHhCCCCEEEEEecCCCCChhhhcccC
Q psy9575 2 RASLQLAQEGLNVAILSKVFPTRSHTVAAQGG 33 (786)
Q Consensus 2 ~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Gg 33 (786)
.||+.|++.|++|+|||+....-|+++.+.|.
T Consensus 130 ~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GC 161 (659)
T PTZ00153 130 AAAINAMERGLKVIIFTGDDDSIGGTCVNVGC 161 (659)
T ss_pred HHHHHHHHCCCcEEEEeCCCCccccceeEeCC
Confidence 68999999999999999752223667766663
No 142
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=98.30 E-value=1.1e-06 Score=80.56 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=54.6
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccc--cCcceEECCCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLPG 645 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~~ 645 (786)
.++++++++ +++|++|++- ..-...+.+|..|.||+|.|.|||+++.||.+++.. |.++.|+|.+..
T Consensus 10 ~~~~~~~~~-~~Ll~~LR~~----lgltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~ 78 (148)
T TIGR03193 10 WREDAVADN-MLLVDYLRDT----VGLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLAT 78 (148)
T ss_pred EEEeecCCC-CcHHHHHHHh----cCCCCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCC
Confidence 456777776 8999999982 123466789999999999999999999999999964 467889999853
No 143
>KOG1335|consensus
Probab=98.30 E-value=3e-06 Score=87.74 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=75.7
Q ss_pred hHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q psy9575 2 RASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYELE 81 (786)
Q Consensus 2 ~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l~ 81 (786)
.||+.|++.|++.+.|||.... |+++.+-|.+- |... .+..-.+.++++ +.++
T Consensus 53 vAAikAaQlGlkTacvEkr~~L-GGTcLnvGcIP---------SKAL------------L~nSh~yh~~q~-----~~~~ 105 (506)
T KOG1335|consen 53 VAAIKAAQLGLKTACVEKRGTL-GGTCLNVGCIP---------SKAL------------LNNSHLYHEAQH-----EDFA 105 (506)
T ss_pred HHHHHHHHhcceeEEEeccCcc-Cceeeeccccc---------cHHH------------hhhhHHHHHHhh-----hHHH
Confidence 4899999999999999996554 56677766442 1110 111111111111 1456
Q ss_pred HcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEE
Q psy9575 82 HFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGV 161 (786)
Q Consensus 82 ~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~ 161 (786)
+.|+++... .+.+. ......+..-+++...+...+++.+|+++.++-. ..+. .+|
T Consensus 106 ~rGi~vs~~---~~dl~---------------~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gs---f~~p-~~V--- 160 (506)
T KOG1335|consen 106 SRGIDVSSV---SLDLQ---------------AMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGS---FLDP-NKV--- 160 (506)
T ss_pred hcCccccce---ecCHH---------------HHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEe---ecCC-ceE---
Confidence 778876421 11110 0001122233566667777778889998877622 1222 222
Q ss_pred EEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 162 VALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 162 ~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
. +...+|+...|.||.+|+|||+--
T Consensus 161 ~-v~k~dg~~~ii~aKnIiiATGSeV 185 (506)
T KOG1335|consen 161 S-VKKIDGEDQIIKAKNIIIATGSEV 185 (506)
T ss_pred E-EeccCCCceEEeeeeEEEEeCCcc
Confidence 1 223577888999999999999844
No 144
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=98.30 E-value=4.5e-07 Score=103.79 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=53.0
Q ss_pred hhHHHhhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhC
Q psy9575 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTC 764 (786)
Q Consensus 685 ~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vC 764 (786)
|.+.+..+..++|++||.|+.+||..... . ...+....+.. ..+ ......|+.||+|.++|
T Consensus 389 P~~eeLl~~~~kCI~CG~Cv~aCP~~l~i------~----e~i~~a~~G~l-------~~l--~~~~d~C~~CG~C~evC 449 (784)
T TIGR00314 389 PDDEELMELANKCTQCGNCVRTCPNSLRV------D----EAMAHAQKGDL-------SKL--EQLEEQCYACGRCEQAC 449 (784)
T ss_pred ChHHHHhhhcccCCCcccchhhCCCCcch------H----HHHHHHhcCCc-------ccc--ccCHhhhhhhhHHhccC
Confidence 33445556689999999999999985211 0 11111111110 001 11235899999999999
Q ss_pred CCCCChHHHHHHHHHHHHH
Q psy9575 765 PKGLNPNRSINKIKELMIY 783 (786)
Q Consensus 765 P~gi~~~~~i~~lr~~~~~ 783 (786)
|++|++.++|..+|+..++
T Consensus 450 P~gIpIvemI~~Ar~~~v~ 468 (784)
T TIGR00314 450 PKNIPIISMITKAGEDRLK 468 (784)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999976554
No 145
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.27 E-value=7.4e-06 Score=91.79 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...++..|.+.+++.|++|+++++|+++..++ +++.++.+ .++ .++|+.||+|||.++.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t---~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQT---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEe---CCc---EEeCCEEEECCCcchH
Confidence 45788899999999999999999999998876 77766654 344 5889999999998863
No 146
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.26 E-value=4.5e-06 Score=90.56 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
...++..|.+.+++.|++++.+++|++|..++ ++|.++.+ .+| .++|+.||+|||.++..
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~---~~g---~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVT---PSG---DVQADQVVLAAGAWAGE 195 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEc---CCC---EEECCEEEEcCChhhhh
Confidence 46889999999999999999999999999876 77777754 445 58899999999988754
No 147
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=98.25 E-value=7.6e-07 Score=102.24 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=54.0
Q ss_pred hhHHHhhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhC
Q psy9575 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTC 764 (786)
Q Consensus 685 ~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vC 764 (786)
|...+..+..++|+.||.|+.+||+... . ....+...++.. . .+. ...+.|+.||+|.++|
T Consensus 355 p~~~el~~~~~kCI~CG~Cv~aCP~~l~-------i---~e~i~~~~~G~~---~-~l~-----~~~~~Ct~CG~C~evC 415 (731)
T cd01916 355 PTDEEFQELAAKCTDCGWCTRACPNSLR-------I---KEAMEAAKEGDF---S-GLA-----DLFDQCVGCGRCEQEC 415 (731)
T ss_pred CchHHHHHhhhcCCCCCcccccCCCCCc-------H---HHHHHHHhcCCh---h-hhh-----hhHhhhhhhhHHhhhC
Confidence 3334445557899999999999998521 0 111221111110 0 010 1247899999999999
Q ss_pred CCCCChHHHHHHHHHHHHHh
Q psy9575 765 PKGLNPNRSINKIKELMIYR 784 (786)
Q Consensus 765 P~gi~~~~~i~~lr~~~~~~ 784 (786)
|+++++.+++..+|+..++.
T Consensus 416 P~gIpi~~mi~~a~~~~vk~ 435 (731)
T cd01916 416 PKEIPIINMIEKAARERIKE 435 (731)
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 99999999999999887754
No 148
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=4.4e-06 Score=95.03 Aligned_cols=46 Identities=26% Similarity=0.302 Sum_probs=33.1
Q ss_pred cccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHH
Q psy9575 336 QMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHIL 399 (786)
Q Consensus 336 t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa 399 (786)
..|.|.||+..+ |++||+||+||++ ++. .+.. .|.-.|++|+.+++
T Consensus 296 ~~g~i~Vd~~l~---------ts~~~IyAiGD~~-~~~----~~~~----~A~~~g~~aa~~i~ 341 (472)
T PRK05976 296 EGGFIQIDDFCQ---------TKERHIYAIGDVI-GEP----QLAH----VAMAEGEMAAEHIA 341 (472)
T ss_pred cCCEEEECCCcc---------cCCCCEEEeeecC-CCc----ccHH----HHHHHHHHHHHHHc
Confidence 357788988887 8999999999998 332 1333 34445888888765
No 149
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.22 E-value=8.6e-06 Score=91.92 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.0
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+++| |++||+||+||++ +.. .++..+.. .|++|+++++.
T Consensus 282 ~G~i~vd~~~~---------Ts~~~IyA~GD~~-~~~----~l~~~A~~----~g~~~a~ni~~ 327 (452)
T TIGR03452 282 DGRIKVDEYGR---------TSARGVWALGDVS-SPY----QLKHVANA----EARVVKHNLLH 327 (452)
T ss_pred CCcEeeCCCcc---------cCCCCEEEeeccc-Ccc----cChhHHHH----HHHHHHHHhcC
Confidence 45688888777 9999999999998 222 24444333 48888888764
No 150
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.21 E-value=9.9e-06 Score=94.65 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=57.5
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecC-CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDS-EGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~-~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
....++..|.+.+++.|++++.+++|++|..++ +++|+|+.+.+..+++.+.|+|+.||+|||.|+.
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 356888999999999999999999999999873 3789999988766776667899999999999874
No 151
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.21 E-value=2.3e-05 Score=87.66 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCC-cEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETG-NIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g-~~~~i~AkaVVlATGG~~ 187 (786)
...++..|.+.+++.|++|+++++|+++..++ +.+. +.+.+ .++ +...++|+.||+|+|.++
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-v~~~~-~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVV-LTVQP-SAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEc-CCCCccceEecCEEEECCCcCh
Confidence 45778899999999999999999999998765 5443 32222 111 012589999999999886
No 152
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.19 E-value=2e-07 Score=88.21 Aligned_cols=58 Identities=28% Similarity=0.508 Sum_probs=35.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++||.|+.|..+||+... .+....+......+. ..-......|++||.|+++||++-
T Consensus 54 ~~~CIgC~lCa~iCP~~aI---------------~m~~~~~~~~g~~~~--~~~~In~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 54 RDKCIGCGLCANICPANAI---------------TMETAERKVDGRKKP--KRPDINLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred ccCCcchhHHHhhCCcCce---------------EEEEcccCCCCcccc--ccceeccccccccCchhhhCchhh
Confidence 5779999999999998632 111111110000000 011234678999999999999863
No 153
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.17 E-value=7.7e-06 Score=91.33 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+.+++.|++++++++|+++..++++++.++.+ .+| .+.|+.||+|+||++.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 4677888999999999999999999997653367777665 456 5899999999999873
No 154
>KOG4716|consensus
Probab=98.17 E-value=3.4e-05 Score=78.63 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=80.6
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYEL 80 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~~l 80 (786)
|+||-+||..|++|.++|--.+.--+++|--||-+...+ |-|..+...+.-..+++...
T Consensus 32 LacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG---------------------CIPKKLMHQAallG~al~da 90 (503)
T KOG4716|consen 32 LACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG---------------------CIPKKLMHQAALLGEALHDA 90 (503)
T ss_pred hhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecc---------------------cccHHHHHHHHHHHHHHHHH
Confidence 689999999999999999866654667788788775543 23333333344445666666
Q ss_pred HHcCCCccccCCCcccccCCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHHhcC--CceEEeceEEEeeeecCCCCE
Q psy9575 81 EHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA--KTNFFIEWMAIDLISDSEGDI 158 (786)
Q Consensus 81 ~~~Gv~~~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~~~~--Gv~i~~~~~v~~L~~~~~g~v 158 (786)
..+|...+.. .+. | .-..+.+.....++.. |-++-.+-.-+..+..= |..
T Consensus 91 ~kyGW~~~e~---~ik------h------------------dW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Nsy-geF 142 (503)
T KOG4716|consen 91 RKYGWNVDEQ---KIK------H------------------DWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSY-GEF 142 (503)
T ss_pred HhhCCCCccc---ccc------c------------------cHHHHHHHHHHHhhhccceEEEEeccceeeeeecc-eee
Confidence 7777665321 110 1 1124566666666554 33333332222222211 333
Q ss_pred EEE---EEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 159 LGV---VALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 159 ~G~---~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
++- ...+ ..|+...+.|..+|+|||+..+
T Consensus 143 v~~h~I~at~-~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 143 VDPHKIKATN-KKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred cccceEEEec-CCCceEEeecceEEEEecCCCC
Confidence 331 2222 4566678899999999999875
No 155
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.17 E-value=5.4e-06 Score=94.15 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=33.8
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+.+| |++||+||+||+++ +. .++ ..|.-.|++|+.+++.
T Consensus 283 ~G~i~vd~~~~---------Ts~~~VyAiGD~~~-~~----~~~----~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 283 RGGILVDETLR---------TSNPGIYAAGDVTG-GL----QLE----YVAAKEGVVAAENALG 328 (463)
T ss_pred CCcEeECCCcc---------CCCCCEEEeeecCC-Cc----ccH----hHHHHHHHHHHHHhcC
Confidence 46688887777 99999999999983 31 133 3445559999988874
No 156
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.16 E-value=2.9e-05 Score=88.21 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=33.3
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+..| |++||+||+||++ +.. .+. ..|.-.|++|+.+++.
T Consensus 289 ~G~i~vd~~~~---------t~~~~IyAiGD~~-~~~----~~~----~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 289 RGQLKVNENYQ---------TAVPHIYAVGDVI-GFP----SLA----SASMDQGRIAAQHAVG 334 (461)
T ss_pred CCcEeeCCCcc---------cCCCCEEEeeecC-CCc----ccH----hHHHHHHHHHHHHHcC
Confidence 46688888777 9999999999998 221 133 3455558999888863
No 157
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.16 E-value=1.7e-05 Score=87.69 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
....++..|.+.+++ |++|+++++|+++..++ ++ +++.+ .+|. .+.|+.||+|+|.++..
T Consensus 133 dp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t---~~g~--~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLD---ANGE--VIAASVVVLANGAQAGQ 192 (381)
T ss_pred ChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEe---CCCC--EEEcCEEEEcCCccccc
Confidence 346889999999999 99999999999998775 43 33433 4563 47899999999998753
No 158
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.14 E-value=2e-05 Score=89.51 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=33.3
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|.|.||+..| |++|++||+||++ ++. .+ ...|.-.|++|+++++.
T Consensus 286 ~g~i~vd~~l~---------t~~~~IyaiGD~~-~~~----~~----~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 286 RGRIVVDEYMR---------TNVPGIYAIGDVI-GGP----ML----AHVASHEGIVAAENIAG 331 (461)
T ss_pred CCcEeeCCCcc---------cCCCCEEEeeecC-CCc----cc----HHHHHHHHHHHHHHHcC
Confidence 36688887777 8999999999998 322 12 23455568888888764
No 159
>PRK10015 oxidoreductase; Provisional
Probab=98.12 E-value=3.3e-06 Score=94.48 Aligned_cols=57 Identities=26% Similarity=0.281 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+++++.|++++.++.|+++..++ +++.|+.. ++ ..++|+.||+|+|..+.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~----~~--~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQA----GD--DILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEe----CC--eEEECCEEEEccCcchh
Confidence 466778888988999999999999998875 77777653 22 26899999999997653
No 160
>PRK14694 putative mercuric reductase; Provisional
Probab=98.10 E-value=1.8e-05 Score=89.92 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=34.7
Q ss_pred cccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 336 QMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 336 t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
..|.|.||+..| |++||+||+||+++ .. . ....|...|++||.+++.
T Consensus 288 ~~G~i~vd~~~~---------Ts~~~IyA~GD~~~-~~-~-------~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 288 ERGAIRIDEHLQ---------TTVSGIYAAGDCTD-QP-Q-------FVYVAAAGGSRAAINMTG 334 (468)
T ss_pred CCCeEeeCCCcc---------cCCCCEEEEeecCC-Cc-c-------cHHHHHHHHHHHHHHhcC
Confidence 356799999888 99999999999982 22 1 233455668888888763
No 161
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.09 E-value=3.1e-07 Score=70.50 Aligned_cols=53 Identities=32% Similarity=0.614 Sum_probs=28.2
Q ss_pred hCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 696 ~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
+||.||+|+++||............ . .............|++||.|+++||++
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 53 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGK-----------------K--VVDKDNERRNAEKCIGCGACVKACPTG 53 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTC-----------------E--ECSECCESTTGGG--TTCHHHHHSTTT
T ss_pred CCCCcchHHHHCCccCeEccCcccc-----------------c--cccccccCCCCCccccHhHHHHHcchh
Confidence 6999999999999864321100000 0 000000111346899999999999997
No 162
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=98.08 E-value=5.4e-06 Score=80.81 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=53.2
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccc--cccCcceEECCCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNL--NELKQPIIIRPLPG 645 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v--~~~~~~~~i~p~~~ 645 (786)
.++++++++ +|||++|++-.. -.....+|+.|.||.|.|.|||++..||.+++ .+|.++.|||-+..
T Consensus 60 ~~~~~v~~~-~tLLd~LR~~l~----ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~~ 128 (217)
T PRK11433 60 TEQLEVDTR-TTLLDALREHLH----LTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGS 128 (217)
T ss_pred EEEEecCCC-CcHHHHHHHhcC----CCCCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcCC
Confidence 445677776 899999998321 11234679999999999999999999999998 66788889998843
No 163
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.08 E-value=4.8e-07 Score=68.52 Aligned_cols=48 Identities=31% Similarity=0.569 Sum_probs=20.3
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCP 765 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP 765 (786)
+.++|+.||.|+.+||+... .... .. ..........|++||.|+.+||
T Consensus 5 d~~~C~~C~~C~~~CP~~~~------------~~~~---~~----------~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 5 DEDKCIGCGRCVKVCPADNA------------IAID---DG----------EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp -TT------TTGGG-TT-----------------EE---E-----------SSSEEE-TTT--TTSHHHHH-T
T ss_pred CcccCcCCcChHHHccchhH------------HHhh---cc----------CCCeEeCcccccccChhhhhCc
Confidence 47899999999999998210 0000 00 0000113578999999999999
No 164
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0002 Score=75.54 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.|..+++.+.+.+...|+++.. ..+..+...+ + ..-+.+ .+|+ ++||+||||||....
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~-~-~F~v~t---~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG-G-PFKVKT---DKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC-c-eEEEEE---CCCe---EEEeEEEECcCCccc
Confidence 5678999999999888999887 6666665553 2 222222 4553 899999999997663
No 165
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.07 E-value=4.3e-05 Score=85.17 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..++-..+..+.+.|.+++..++|+.++.++ | |.|+.+.|..+|+.+.|+|+.||.|||.|+.
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 4677788888889999999999999999997 7 9999999989999999999999999999874
No 166
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.06 E-value=2.3e-06 Score=95.85 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 127 LHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 127 ~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
...|.+.+++.||+++.++.++++++++ ++|.||.+.+. .| ...|+|+.||-|||-
T Consensus 93 ~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~~-~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 93 KAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVETK-SG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc-ccccccccccc-cc-ccccccccccccccc
Confidence 3445555567899999999999999997 89999998763 35 568999999999995
No 167
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=98.05 E-value=4.6e-07 Score=72.56 Aligned_cols=25 Identities=32% Similarity=0.675 Sum_probs=22.1
Q ss_pred cCCCccccccccccchhhCCCCCCh
Q psy9575 746 EDPYRLFRCRSIMNCVDTCPKGLNP 770 (786)
Q Consensus 746 ~~~~~~~~C~~Cg~C~~vCP~gi~~ 770 (786)
.+..+...|+.||+|+.+||++||+
T Consensus 44 ~~~~~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 44 RDRYGEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred hhhcCCccCCCcChHhhhcCCCCCc
Confidence 3455789999999999999999997
No 168
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=4.9e-06 Score=94.45 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=34.3
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSL 401 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~ 401 (786)
.|.|.||+.+| |++||+||+||++ +.. .+. ..|.-.|++|+.+++.+
T Consensus 285 ~g~i~vd~~~~---------ts~~~IyA~GD~~-~~~----~~~----~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 285 RGRPVVDEHTQ---------TSVPGIYAAGDVN-GKP----PLL----HEAADEGRIAAENAAGD 331 (460)
T ss_pred CCcEeECCCcc---------cCCCCEEEEEecC-CCc----cch----hHHHHHHHHHHHHhcCC
Confidence 45678888777 9999999999998 222 133 33555599999988754
No 169
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.03 E-value=0.00016 Score=82.01 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
....++.+|.+.+++.|++|+++++|+++..++++.+ .+.+.+..+|+...++|+.||+|+|+++.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 3468899999999999999999999999988642333 23333334554456899999999999873
No 170
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=98.02 E-value=8.6e-06 Score=85.79 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=50.9
Q ss_pred hhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC---
Q psy9575 690 ILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK--- 766 (786)
Q Consensus 690 ~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~--- 766 (786)
..+..+.|.+|+.|...||++..... . ....+..+.. -.+.|.+||.|...||.
T Consensus 9 ~~R~l~iC~~C~~C~~~CpvfPa~~~-----~-------------~~~~~~d~~~-----la~lChnC~~C~~~CPy~pP 65 (372)
T TIGR02484 9 AKRVLNLCNSCGYCTGLCAVFPAAQG-----R-------------PDLTRGDLRH-----LAHLCHDCQSCWHDCQYAPP 65 (372)
T ss_pred HHHHhHhCcCcCCccccCCCcccccc-----c-------------cccCHHHHHH-----HHHHCcCcccccccCcCCCC
Confidence 33446899999999999999842210 0 0001111111 25789999999999999
Q ss_pred ---CCChHHHHHHHHHHHHHh
Q psy9575 767 ---GLNPNRSINKIKELMIYR 784 (786)
Q Consensus 767 ---gi~~~~~i~~lr~~~~~~ 784 (786)
+|++.+++.++|....++
T Consensus 66 Hef~v~~p~lma~~R~~~~~~ 86 (372)
T TIGR02484 66 HAFAINLPATLADVRRASYAE 86 (372)
T ss_pred ccccCCHHHHHHHHHHHHHHh
Confidence 889999999999876554
No 171
>PRK14727 putative mercuric reductase; Provisional
Probab=98.02 E-value=1.4e-05 Score=91.02 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=34.5
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|+|.||+.+| |++||+||+|||+ +.. . + ...|...|++||.+++.
T Consensus 300 ~G~i~Vd~~~~---------Ts~~~IyA~GD~~-~~~-~---~----~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 300 SGAIVVNPAME---------TSAPDIYAAGDCS-DLP-Q---F----VYVAAAAGSRAGINMTG 345 (479)
T ss_pred CCCEEECCCee---------cCCCCEEEeeecC-Ccc-h---h----hhHHHHHHHHHHHHHcC
Confidence 46799998888 9999999999998 222 1 1 23455669999988764
No 172
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.01 E-value=5.6e-05 Score=86.33 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=18.2
Q ss_pred ChHhhhcHhCCCCEEEEEec
Q psy9575 1 MRASLQLAQEGLNVAILSKV 20 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~ 20 (786)
++||+.|++.|++|+|||+.
T Consensus 18 ~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 18 MAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred HHHHHHHHhCCCeEEEEecc
Confidence 47999999999999999974
No 173
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.00 E-value=6.7e-05 Score=83.30 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
...+...|.+.+++.|+++++++.|+++..++ +.+ .+.. .+| .+.|+.||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~---~~g---~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRT---TQG---EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEE---CCC---EEEeCEEEECCCcch
Confidence 46789999999999999999999999998765 543 3333 345 589999999999876
No 174
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.00 E-value=7.7e-05 Score=85.41 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...++..+.+.+++.|++++.+++|+++..++ + .+++.+.+..+|+...|+|+.||+|||.|+.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARREN-G-LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C-EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 45677888888999999999999999998764 4 4577766545676667999999999998873
No 175
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.00 E-value=1.6e-07 Score=71.06 Aligned_cols=52 Identities=31% Similarity=0.606 Sum_probs=24.2
Q ss_pred hCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 696 ~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+||.||.|+.+||...+...+...+ ... .. .......|++||.|+.+||+++
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~---------------~~~----~~--~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENE---------------EGK----PK--MVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT----------------SSS----TT--SEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCccccccc---------------CCc----eE--EEEechhCcCcChhhhhCcCcC
Confidence 6999999999999753211100000 000 00 0123578999999999999984
No 176
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.00 E-value=6.5e-06 Score=69.41 Aligned_cols=53 Identities=32% Similarity=0.567 Sum_probs=42.1
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeC------------------Ccccccccccccc
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNIN------------------GKNGLACITNLNE 633 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vn------------------G~~~laC~t~v~~ 633 (786)
..+++++++ +|||++|.+.|+. ...+|+.|.||+|.|+|. +..+|||.+.+.+
T Consensus 9 ~~~~~~~~g-~~ll~al~~~g~~------~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~ 79 (84)
T cd00207 9 GVEVEVPEG-ETLLDAAREAGID------IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD 79 (84)
T ss_pred CEEEEECCC-CcHHHHHHHcCCC------cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCC
Confidence 456777776 8999999998773 447799999999999996 3356899998854
No 177
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.99 E-value=6.3e-06 Score=88.93 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=51.3
Q ss_pred hhHHHhhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhC
Q psy9575 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTC 764 (786)
Q Consensus 685 ~~~~~~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vC 764 (786)
|.+.+..+...+|..||-|..+||.. +--|.++..+.. + +...+..+ ...|..||+|.++|
T Consensus 390 p~~ee~~e~a~kc~~cG~C~~~CP~~------l~i~eam~~A~~----G----d~~~l~~l-----~d~C~~C~rCEq~C 450 (772)
T COG1152 390 PDDEEFMEYARKCTYCGNCMRACPNE------LDIPEAMEYAAK----G----DFSKLEDL-----HDVCIGCGRCEQVC 450 (772)
T ss_pred CChHHHHHHHHhcccccchhccCCcc------cchHHHHHHhhc----C----ChHHHHHH-----HHHhhhhhhhhhhC
Confidence 33444555578999999999999974 222333333222 1 11112222 24699999999999
Q ss_pred CCCCChHHHHHHHHHHH
Q psy9575 765 PKGLNPNRSINKIKELM 781 (786)
Q Consensus 765 P~gi~~~~~i~~lr~~~ 781 (786)
|++|++.++|.+.-+..
T Consensus 451 pk~ipi~nm~~~a~~~~ 467 (772)
T COG1152 451 PKNIPILNMIEKAAQKR 467 (772)
T ss_pred cccCchhhHHHHHHHHh
Confidence 99999999998775443
No 178
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.98 E-value=5.1e-05 Score=82.78 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCC-C
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGG-G 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~-~ 187 (786)
|..+.++|.+.++++|++|+.++.|+++..++ +++.++.+ .++....+.|+.||||||+| +
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t---~~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHT---RNHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEe---cCCccceEECCEEEEccCCCcC
Confidence 67789999999999999999999999999886 88888765 23322368999999999998 6
No 179
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.97 E-value=1e-05 Score=75.02 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=52.6
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccccccc--cCcceEECCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLP 644 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~ 644 (786)
.++++++++ +++|+.|+..+. .....+|..|.||+|.|.|||+++.||.+++.. |.++.|+|-+.
T Consensus 17 ~~~~~~~~~-~~Ll~~LR~~gl-----tgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~ 83 (159)
T PRK09908 17 PFQLHAAPG-TPLSELLREQGL-----LSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEA 83 (159)
T ss_pred EEEEecCCC-CcHHHHHHHcCC-----CCCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCC
Confidence 556777776 899999997432 245678999999999999999999999999865 45677888874
No 180
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=97.96 E-value=1e-05 Score=85.51 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=50.7
Q ss_pred hhhchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC---
Q psy9575 690 ILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK--- 766 (786)
Q Consensus 690 ~~~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~--- 766 (786)
..+..+.|..|..|...||++. ... .|... .+..++ .....|.+||.|...||.
T Consensus 28 ~~r~~~iC~~Cr~C~~~CpvfP---------~l~---~r~~~------~~~d~~-----~~a~~C~~Cg~C~~~CP~apP 84 (389)
T PRK15033 28 VARQMQICNACRYCEGFCAVFP---------AMT---RRLEF------GKADIH-----YLANLCHNCGACLHACQYAPP 84 (389)
T ss_pred HHHHhHhCCCCCCccccCCCch---------hhh---hhhcC------ChhhhH-----HHHHhCcCcccccccCcCCCC
Confidence 4445789999999999999972 211 11000 011111 123579999999999999
Q ss_pred ---CCChHHHHHHHHHHHHHh
Q psy9575 767 ---GLNPNRSINKIKELMIYR 784 (786)
Q Consensus 767 ---gi~~~~~i~~lr~~~~~~ 784 (786)
+|++.+++.++|....++
T Consensus 85 hef~i~ip~~l~~~r~~sy~~ 105 (389)
T PRK15033 85 HEFAVNVPKAMAQVRLETYQE 105 (389)
T ss_pred cccCCCHHHHHHHHHHHHHHH
Confidence 999999999999877654
No 181
>KOG0404|consensus
Probab=97.95 E-value=1.7e-05 Score=76.21 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=48.7
Q ss_pred eeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhh
Q psy9575 328 PVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLEL 403 (786)
Q Consensus 328 ~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~ 403 (786)
-..|...+.-|.+..|++|.++...+...|+|||+||+||+- .- ..|-+=. +.-+|-+|+..|-.|+.
T Consensus 252 GH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVq--D~--kyRQAvT----aAgsGciaaldAe~yL~ 319 (322)
T KOG0404|consen 252 GHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQ--DK--KYRQAVT----AAGSGCIAALDAERYLT 319 (322)
T ss_pred cCCchhhHhcCceeeccCceEEeccCcccccccceeeccccc--hH--HHHHHHh----hhccchhhhhhHHHHhh
Confidence 345666778899999999998877666679999999999986 21 1222211 22348888888888874
No 182
>PRK13748 putative mercuric reductase; Provisional
Probab=97.95 E-value=3.3e-05 Score=90.01 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=33.0
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHIL 399 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa 399 (786)
.|+|.||+.+| |++||+||+||++ +.. .+ ...|+..|++|+.+++
T Consensus 382 ~g~i~vd~~~~---------Ts~~~IyA~GD~~-~~~----~~----~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 382 QGAIVIDQGMR---------TSVPHIYAAGDCT-DQP----QF----VYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCEeECCCcc---------cCCCCEEEeeecC-CCc----cc----hhHHHHHHHHHHHHHc
Confidence 46788888887 9999999999998 222 12 2235556888888876
No 183
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.94 E-value=2.3e-05 Score=86.59 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
...+.+.|.+.+++.|++++.+++|+++..++ +.+ .+.+ .++ .|.|+.||+|+|+++
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~---~~~---~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKT---TKG---SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEe---CCC---EEEeCEEEEecCcch
Confidence 45788899998988999999999999998765 543 3432 344 588999999999986
No 184
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.93 E-value=1.2e-05 Score=73.71 Aligned_cols=65 Identities=20% Similarity=0.378 Sum_probs=52.8
Q ss_pred eEEEEcCCCChhHHHHHHH-chhccCCCcccccCCCCCcccceEEEeCCcccccccccccc--cCcceEECCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHR-IKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLP 644 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~-~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~ 644 (786)
.+++++.+. +++|++|+. ++- -....+|..|.||+|.|.|||+++.||.+++.. |.++.|||-+.
T Consensus 12 ~~~~~~~p~-~~Ll~~LRd~l~l-----tgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~ 79 (156)
T COG2080 12 PVELDVDPR-TPLLDVLRDELGL-----TGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLA 79 (156)
T ss_pred EEEEEeCCC-ChHHHHHHHhcCC-----CCcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeeccc
Confidence 667888887 899999996 222 234578999999999999999999999999854 45777888874
No 185
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.89 E-value=0.0002 Score=79.58 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=37.4
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
..-+|+..+||++ +-+ +++.|.++.-|+.+|++||+.+++.++.
T Consensus 267 ~~~~~~llvGDAA-g~v---~P~tGeGI~~A~~sg~~aa~~i~~~~~~ 310 (398)
T TIGR02028 267 RVVGRVALVGDAA-GYV---TKCSGEGIYFAAKSGRMCAEAIVEESRL 310 (398)
T ss_pred EECCCEEEEEcCC-CCC---CcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999998 455 5688999999999999999999988754
No 186
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.88 E-value=2.8e-05 Score=88.98 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...++..+...+++.|++++.+++|+++..++ + .+++.+.+. .|+...|+|+.||.|||.|+.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~-~~~v~~~~~-~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREG-G-LWRVETRDA-DGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-C-EEEEEEEeC-CCCEEEEEecEEEECCCccHH
Confidence 46778888889999999999999999998874 3 456766553 366667999999999998873
No 187
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.87 E-value=3.3e-06 Score=65.32 Aligned_cols=49 Identities=31% Similarity=0.621 Sum_probs=23.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK 766 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 766 (786)
.++||.||.|+.+||...... .. .+. .. .. ......|+.||.|+.+||+
T Consensus 5 ~~~Ci~Cg~C~~~Cp~~~~~~------------i~--~~~--~~---~~-----~v~~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 5 EDKCIGCGKCVRACPDGAIDA------------IE--VDE--GK---KV-----PVNPDKCIGCGLCVKVCPV 53 (59)
T ss_dssp TTT----SCCCHHCCCCS-S-------------EC--CTT--TT---SS-----ECE-TT--S-SCCCCCSSS
T ss_pred cccccChhhHHhHcCccceee------------EE--ecC--Ce---eE-----EeccccCcCcCcccccCCC
Confidence 689999999999999632110 00 000 00 00 0123579999999999996
No 188
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.84 E-value=8.3e-05 Score=81.70 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...++..|.+.+.+. |++|+++++|++|.. + ++.+ .+|+ ++|+.||+|||.++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t---~~g~---i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRT---SRGD---VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEe---CCCc---EEeCEEEECCCCChh
Confidence 457888999888775 999999999999842 2 3333 4563 679999999999864
No 189
>KOG0042|consensus
Probab=97.83 E-value=5.3e-05 Score=82.08 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
...+.-+++-.+.++|..+..+.+|.+|+++++++|.||.+.|.-+|+.+.|+||.||-|||-|+
T Consensus 223 DaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 223 DARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred hHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 34566666667778999999999999999998899999999999999999999999999999887
No 190
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.80 E-value=0.00026 Score=77.45 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
....++.+|.+.++++|+++.++++|++|.++++| +...+..+|+.. ++||.||.|+|+++
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg----~~~~~~~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG----VFVLNTSNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc----eEEEEecCCcEE-EEeeEEEECCchhH
Confidence 34678999999999999999999999999998744 334444677655 99999999999887
No 191
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.80 E-value=3.2e-05 Score=71.62 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=51.3
Q ss_pred eEEEEcCCCChhHHHHHHHc-hhccCCCcccccCCCCCcccceEEEeCCcccccccccccc--cCcceEECCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRI-KYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLP 644 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~-~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~ 644 (786)
.++++++++ +++|++|+.- +. -....+|..|.||+|.|.|||+++.||.+++.. |.++.|+|-+.
T Consensus 12 ~~~~~~~~~-~~Ll~~LR~~~~l-----tgtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~ 79 (151)
T TIGR03198 12 AWEVAAVPT-TRLSDLLRKELQL-----TGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIA 79 (151)
T ss_pred EEEeecCCC-cHHHHHHHhccCC-----CCCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcC
Confidence 456676665 8999999972 32 234567999999999999999999999999954 56778888873
No 192
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.76 E-value=3.1e-05 Score=64.19 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=33.0
Q ss_pred eeEEEEcCCCChh-HHHHHHHc-hhccCCCcccccCCCCCcccceEEEeC
Q psy9575 573 QKFLVNLSSNDKM-LLDALHRI-KYDIDDSLTLRRSCREGVCGSDAMNIN 620 (786)
Q Consensus 573 ~~~~v~~~~~~~t-iL~al~~~-~~~~~~~l~~~~~Cr~g~Cg~C~V~vn 620 (786)
+.++|+++++ .| ||++|++. ++ ....+|+.|.||+|.|+|.
T Consensus 6 ~~~~~~~~~~-~~~ll~~~~~~~gi------~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 6 KGVTVEVPPG-ETLLLDALERAGGI------GIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EEEEEEEETT-SBBHHHHHHHTTTT------TSTTSSSSSSSSTTEEEEE
T ss_pred eEEEEEeCCC-ccHHHHHHHHcCCC------CcccCCCCCccCCcEEEEe
Confidence 4567777777 67 99999997 66 3347899999999999986
No 193
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=8.2e-05 Score=83.85 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=24.0
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhccc
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQG 32 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~G 32 (786)
++||+.|++.|.+|+|+||....-|+++.+.|
T Consensus 16 ~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~g 47 (438)
T PRK07251 16 KTLAAKLASAGKKVALVEESKAMYGGTCINIG 47 (438)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccceeeecCc
Confidence 47999999999999999997532344454544
No 194
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.73 E-value=0.00029 Score=80.01 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCC-ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAK-TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~G-v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...+.++|.+.+++.| ++|+++++|+++..++++.+. +.+.+..+|+...|+|+.||+|+|+++.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 4578999999998886 899999999999886534443 3333334564446899999999999873
No 195
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.72 E-value=0.0003 Score=83.53 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
...++.+|.+.+++ |+++++++.|+++..++ +.+. +.+ .+|. .+.|+.||+|+|.++..
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t---~~g~--~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDF---AGGT--LASAPVVVLANGHDAAR 465 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEE---CCCc--EEECCEEEECCCCCccc
Confidence 45789999999988 99999999999998875 5443 322 4453 46799999999998753
No 196
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.70 E-value=0.015 Score=64.41 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEc---CCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEM---ETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~---~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+-+.|.+++.+.|++++.. .++++..++ +.+ .+...+. .+|+...++|+.||.|+|..+.
T Consensus 92 ~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 92 EVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 356778888888899999765 588987765 443 3444320 1233457999999999997763
No 197
>PLN02697 lycopene epsilon cyclase
Probab=97.68 E-value=0.0014 Score=74.69 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+++.+.|+++ .++.|+++..++ +.+..+.. .+|. .+.|+.||.|+|..+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~---~dG~--~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVAC---EDGR--VIPCRLATVASGAASG 249 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEE---cCCc--EEECCEEEECCCcChh
Confidence 567889999998899998 577899988765 44433322 3453 5899999999998773
No 198
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00023 Score=78.77 Aligned_cols=170 Identities=17% Similarity=0.135 Sum_probs=92.9
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChhhhcccCeeeccCCCCCC--------CHHHHHHHHHHhcC---CCCcHHHHHHH
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKD--------NWHWHMFDTIKGSD---YLGDQDAIEFM 69 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s~~a~Ggi~a~~~~~~~d--------~~~~~~~d~~~~~~---~~~~~~~v~~~ 69 (786)
|++|++|++.|.+|+|+|+.....|+|..++|++.........+ ....++........ .+.....+...
T Consensus 17 ls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 96 (387)
T COG0665 17 LSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELGTGAGLRRRGLLDLA 96 (387)
T ss_pred HHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhCcchhcchhhhhhhh
Confidence 58999999999999999999888788888888887766542100 00111111111111 11111111111
Q ss_pred HH-------HHHHHHHHHHHcCCCc---cccCCCc----cccc-CCCCccCCCCCCCcceEEEecCCcHHHHHHHHHHHH
Q psy9575 70 CK-------EAPKVVYELEHFGMPF---DRNKNGT----IYQR-PFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRN 134 (786)
Q Consensus 70 ~~-------~~~~~i~~l~~~Gv~~---~~~~~g~----~~~~-~~gg~~~~~~~~~~~r~~~~~~~~g~~i~~~L~~~~ 134 (786)
.. ......+.+...+... +..+..+ +... ..++. ..+.. .......+++.|.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~-------~~~~~---~~~~p~~~~~~l~~~~ 166 (387)
T COG0665 97 AREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGL-------FDPTG---GHLDPRLLTRALAAAA 166 (387)
T ss_pred hccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeE-------ecCCC---CcCCHHHHHHHHHHHH
Confidence 11 1223333334444332 1100000 0000 01111 00100 1113357899999999
Q ss_pred hcCC-ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 135 LHAK-TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 135 ~~~G-v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
+++| ..+..++.++.+..+ . ++.++.+ .+|+ |.|+.||+|||.++.
T Consensus 167 ~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t---~~g~---i~a~~vv~a~G~~~~ 213 (387)
T COG0665 167 EELGVVIIEGGTPVTSLERD-G-RVVGVET---DGGT---IEADKVVLAAGAWAG 213 (387)
T ss_pred HhcCCeEEEccceEEEEEec-C-cEEEEEe---CCcc---EEeCEEEEcCchHHH
Confidence 9999 566668888888765 2 5666665 5563 899999999998874
No 199
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.60 E-value=0.00093 Score=73.69 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...++..+.+.+.+.|++++++++|+++..++ +. +.+.. .+| .+.|+.||+|||+++.
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~---~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADG-DG-VTVTT---ADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-Ce-EEEEe---CCC---EEEeeEEEEecCcchh
Confidence 35677888888888999999999999998875 43 23332 455 5789999999999864
No 200
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=97.58 E-value=2.1e-05 Score=76.43 Aligned_cols=58 Identities=28% Similarity=0.574 Sum_probs=33.8
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
+.++||.||.|+.+||....... +.. +.. ......... ......|+.||.|+++||++
T Consensus 60 ~~~kCi~Cg~C~~aCP~~ai~~~-----------~~~--~~~--~~~~~~~~~--~id~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 60 EFDKCIACEVCVRVCPINLPVVD-----------WEF--NKA--IKKKQLKNY--SIDFGVCIFCGNCVEYCPTN 117 (183)
T ss_pred CcccCcCcCChhhhCCCCccccc-----------ccc--ccc--cccccccee--ecCcccccCcCchhhhcCCC
Confidence 37899999999999998521100 000 000 000000001 12346799999999999986
No 201
>KOG3256|consensus
Probab=97.56 E-value=9.2e-06 Score=73.25 Aligned_cols=57 Identities=21% Similarity=0.500 Sum_probs=35.6
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++||.|-.|+++||.-...-+ + +.+...+ .|.... +.....|+.||.|+++||++-
T Consensus 110 eerCIACklCeavCPaqaitie-----------a----e~r~dgs-rRttrY--dIDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 110 EERCIACKLCEAVCPAQAITIE-----------A----EERTDGS-RRTTRY--DIDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred chhhhhHHHHHHhCCcccceee-----------c----eecCCcc-ccceee--cccceeeeeecchhhhCCccc
Confidence 6799999999999998532110 1 1111111 111111 234678999999999999864
No 202
>CHL00134 petF ferredoxin; Validated
Probab=97.56 E-value=8.7e-05 Score=64.36 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=32.1
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
.+.++++++ +|||+||.+.|+ ....+|+.|.||+|.|.|
T Consensus 16 ~~~~~~~~~-~tLL~a~~~~Gi------~i~~~C~~G~Cg~C~v~v 54 (99)
T CHL00134 16 DVTIDCPDD-VYILDAAEEQGI------DLPYSCRAGACSTCAGKV 54 (99)
T ss_pred eEEEEECCC-CcHHHHHHHcCC------CCCcCCCCccCCCCEEEE
Confidence 345666666 899999999988 345679999999999988
No 203
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=97.55 E-value=0.00011 Score=63.51 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=30.8
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
..++++++ +||||||.+.|+. ...+|+.|.||+|.|+|
T Consensus 15 ~~~~~~~g-~tLLda~~~~Gi~------i~~~C~~G~Cg~C~v~v 52 (97)
T TIGR02008 15 ETIECPDD-QYILDAAEEAGID------LPYSCRAGACSTCAGKV 52 (97)
T ss_pred EEEEECCC-CcHHHHHHHcCCC------CCcCCCCccCCCCceEE
Confidence 34555666 8999999999883 34689999999999988
No 204
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.51 E-value=0.018 Score=64.82 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=37.2
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
+.-+|++.+||++ +-+ +++.|.++..|+.+|++||+.+++.+..
T Consensus 306 ~~~~~vlLvGDAA-g~v---~P~tGeGI~~Am~sg~~AAe~i~~~~~~ 349 (450)
T PLN00093 306 RVRGRVALVGDAA-GYV---TKCSGEGIYFAAKSGRMCAEAIVEGSEN 349 (450)
T ss_pred eeCCCcEEEeccc-cCC---CccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999998 455 5688999999999999999999988753
No 205
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.47 E-value=2.3e-05 Score=75.18 Aligned_cols=57 Identities=25% Similarity=0.455 Sum_probs=33.2
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++||.|+.|+.+||......... + ..+++ . .... .......|+.||.|+.+||++.
T Consensus 57 ~~~Ci~C~~C~~~CP~~ai~~~~~--~---------~~~g~----~-~~~~--~~i~~~~C~~Cg~Cv~~CP~~A 113 (164)
T PRK05888 57 EERCIACKLCAAICPADAITIEAA--E---------REDGR----R-RTTR--YDINFGRCIFCGFCEEACPTDA 113 (164)
T ss_pred CccCCcccChHHHcCccccccccc--c---------CCCCc----c-ccee--eecCCCcCcccCcchhhcCcCc
Confidence 459999999999999642211000 0 00000 0 0000 0123468999999999999754
No 206
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=97.45 E-value=0.00011 Score=61.60 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=31.4
Q ss_pred EEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe-CC
Q psy9575 576 LVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI-NG 621 (786)
Q Consensus 576 ~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v-nG 621 (786)
.+++++++.|||||+.+.|+ ....+||.|.||+|.+.+ .|
T Consensus 12 ~~~~~~~~~tlL~a~~~~gi------~~p~~Cr~G~Cg~C~~~~~sG 52 (84)
T PRK10713 12 QLLCQDEHPSLLAALESHNV------AVEYQCREGYCGSCRTRLVAG 52 (84)
T ss_pred EEEecCCCCcHHHHHHHcCC------CCCCCCCCeECCCCEeEEEeC
Confidence 34554444799999999888 456899999999999986 45
No 207
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.42 E-value=3.3e-05 Score=95.39 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=37.4
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHH--hhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRF--ISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.||.|+.+||+...... +..+..+...-+. ..+....... .. ..........|+.||.|+++||.+
T Consensus 682 ~~~Ci~Cg~C~~vCP~~ai~~~-~~~~~~~~~ap~~~~~~~~~~~~~~-~~-~~~i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 682 PDNCIQCNQCAFVCPHAAIRPK-LADEEELENAPAGFKSLDAKGKELE-GM-KFRIQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred cccCCCccchHHhcChhhcccc-ccchhhhhcCcccchhhhhhccccc-cc-ceeEEeccccCcCccchhhhcCCC
Confidence 6799999999999998644321 2222211111000 0000000000 00 000112457899999999999997
No 208
>PRK13984 putative oxidoreductase; Provisional
Probab=97.40 E-value=0.00012 Score=85.93 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.2
Q ss_pred cccccccccchhhCCCCCChHHHHHHHHHHHHH
Q psy9575 751 LFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~ 783 (786)
.+.|+.||.|..+||.++++.+.+..+|+...+
T Consensus 184 ~~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~~~ 216 (604)
T PRK13984 184 AARCVECGICTDTCPAHMDIPQYIKAIYKDDLE 216 (604)
T ss_pred hhhhcCCCcccccCCCCCCHHHHHHHHHcCCHH
Confidence 478999999999999999999999999875444
No 209
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.39 E-value=0.00068 Score=76.03 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+.+.|.+.+++.|++++.++.|+++..++ ++++++.. +|. .+.|+.||+|+|..+
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~----~g~--~i~A~~VI~A~G~~s 164 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEA----DGD--VIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEc----CCc--EEECCEEEEEeCCCH
Confidence 3567788888988999999999999998875 77766542 343 589999999998644
No 210
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.39 E-value=0.0013 Score=74.62 Aligned_cols=59 Identities=5% Similarity=0.147 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhc----CC--ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLH----AK--TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~----~G--v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...+...|.+.+++ .| ++|+++++|++|..++ +.+.++.+ .+| .|+|+.||+|+|+|+.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T---~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHT---NRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEE---CCC---EEEeCEEEECcChhHH
Confidence 46788999999998 77 8899999999999875 55555544 456 5899999999999984
No 211
>PRK06273 ferredoxin; Provisional
Probab=97.35 E-value=3.2e-05 Score=73.39 Aligned_cols=59 Identities=25% Similarity=0.462 Sum_probs=34.1
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
...|+.||.|+.+||....... ...|......+ .. ..........|+.||.|..+||++
T Consensus 48 ~~~CigCg~C~~aCP~~AI~~~-~~ep~~~~~~~----------~~----~~~~~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 48 EELCIGCGGCANVCPTKAIEMI-PVEPVKITEGY----------VK----TKIPKIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred chhCcChhHHHHhcCccceeee-cccccchhccc----------cc----ccceecccccCcCCCCcchhCCHh
Confidence 6799999999999997532111 01111000000 00 000011346799999999999988
No 212
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.33 E-value=0.0067 Score=68.57 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 122 TGHALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
....+.++|.+.+.+ .|+++++++.|++|..++++.+. +...+..+++...++|+.||+|+|+++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 345788999999865 49999999999999876325543 2222223453335899999999999883
No 213
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.31 E-value=7.4e-05 Score=79.80 Aligned_cols=59 Identities=25% Similarity=0.572 Sum_probs=33.6
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++||.|+.|+.+||...... .++...+++.... +.... ......|+.||.|+.+||++
T Consensus 246 ~~~Ci~C~~C~~~CP~~ai~~-----------~~~~~~~~~~~~~--~~~~~--~~d~~~C~gCg~C~~~CP~~ 304 (312)
T PRK14028 246 HSKCIMCRKCWLYCPDDAIIE-----------AWREAEGPRGRKF--RMKMI--DFDYQYCKGCGVCAEVCPTG 304 (312)
T ss_pred cccCcCcccccccCChhhhhc-----------ccccccCcccccc--cceee--cCCcccCcCcCchhhhCCHh
Confidence 679999999999999752210 0111001100000 00011 11246799999999999974
No 214
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=97.31 E-value=3.2e-05 Score=70.29 Aligned_cols=57 Identities=26% Similarity=0.441 Sum_probs=33.3
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||...........+ +.+ ..... .......|+.||.|+.+||.+.
T Consensus 42 ~~~Ci~C~~C~~~CP~~ai~~~~~~~~-----------~~~-----~~~~~--~~~~~~~C~~Cg~Cv~~CP~~a 98 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADAIRVVPAEGE-----------DGK-----RRLKF--YQINFGRCIFCGLCEEACPTDA 98 (122)
T ss_pred cCcCcCcchhhhhcCHhHeeeeeeccC-----------CCc-----eeccc--ceECcccCCCCCchhhhCCCcc
Confidence 489999999999999642211000000 000 00000 0112457999999999999883
No 215
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=97.29 E-value=0.00039 Score=72.36 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=30.9
Q ss_pred ccccccccccchhhCCCCCChHHHHHHHHHHHHHh
Q psy9575 750 RLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784 (786)
Q Consensus 750 ~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~~ 784 (786)
..+.|+.||+|...||.+|++.+++.++++.+...
T Consensus 349 ~as~CieCgqCl~~CPq~l~Ip~~Lk~v~~~leg~ 383 (391)
T COG1453 349 KASDCIECGQCLEKCPQHLDIPELLKEVHEELEGE 383 (391)
T ss_pred cccccchhhhhhhcCCCcCcHHHHHHHHHHHhcch
Confidence 35789999999999999999999999998876543
No 216
>CHL00065 psaC photosystem I subunit VII
Probab=97.28 E-value=6.1e-05 Score=62.88 Aligned_cols=55 Identities=24% Similarity=0.500 Sum_probs=32.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||.....-....+ .... ... .......|+.|+.|+.+||++.
T Consensus 8 ~~~Ci~Cg~C~~~CP~~~i~~~~~~~--------------~~~~---~~~---~~~~~~~C~~C~~C~~~CP~~A 62 (81)
T CHL00065 8 YDTCIGCTQCVRACPTDVLEMIPWDG--------------CKAK---QIA---SAPRTEDCVGCKRCESACPTDF 62 (81)
T ss_pred cccCCChhHHHHHCCccchhheeccc--------------cccc---ccc---ccCCCCcCCChhhhhhhcCccc
Confidence 67999999999999964211000000 0000 000 0112357999999999999874
No 217
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.28 E-value=4.8e-05 Score=63.53 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=33.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||..........+. . ...+ ........|+.||.|+.+||++.
T Consensus 8 ~~~Ci~C~~C~~~CP~~~i~~~~~~~~--------------~---~~~~---~~~~~~~~C~~Cg~C~~~CP~~a 62 (81)
T PRK02651 8 YDTCIGCTQCVRACPLDVLEMVPWDGC--------------K---AGQI---ASSPRTEDCVGCKRCETACPTDF 62 (81)
T ss_pred cccCCCcchHHHHCCccceeccccccc--------------c---cCcc---cccCCCCcCCChhhhhhhcCCCc
Confidence 589999999999999642211100000 0 0000 00112367999999999999874
No 218
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.27 E-value=0.00021 Score=82.14 Aligned_cols=60 Identities=27% Similarity=0.326 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 121 ~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+..+...+.+.+++.|++++.+++|+++..++ +.+ .+. ..+|+ .+.++.||+|||...
T Consensus 264 ~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~~~-~v~---~~~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYPIDLMENQRAKKIETED-GLI-VVT---LESGE--VLKAKSVIVATGARW 323 (515)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC-CeE-EEE---ECCCC--EEEeCEEEECCCCCc
Confidence 3577888899999988999999999999987764 322 222 24554 588999999999864
No 219
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.27 E-value=3.7e-05 Score=64.03 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=33.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
.++|+.|+.|+.+||+.........+. ....+ ........|+.||.|+++||++.-
T Consensus 7 ~~~Ci~C~~Cv~~CP~~~i~~~~~~~~-----------------~~~~~---~~~~~~~~C~~Cg~C~~~CP~~ai 62 (80)
T TIGR03048 7 YDTCIGCTQCVRACPTDVLEMVPWDGC-----------------KAGQI---ASAPRTEDCVGCKRCESACPTDFL 62 (80)
T ss_pred CCcCcCcchHHHHCCccceeeeccccc-----------------ccccc---cCcCCCCcCcChhHHHHhcCcccC
Confidence 689999999999999642211000000 00000 001123579999999999998754
No 220
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.26 E-value=6.1e-05 Score=68.13 Aligned_cols=51 Identities=29% Similarity=0.617 Sum_probs=33.2
Q ss_pred hchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 692 DGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 692 ~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.+.++|+.||.|+.+||....... + +. . .+ . .....|+.||.|+.+||++.
T Consensus 39 i~~~~Ci~C~~C~~~CP~~ai~~~----~-----------~~----~--~~-~----i~~~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 39 YDVDKCVGCRMCVTVCPAGVFVYL----P-----------EI----R--KV-A----LWTGRCVFCGQCVDVCPTGA 89 (120)
T ss_pred ECcccCcCcccHHHHCCccceEcc----c-----------cc----c--ce-E----ecCCcCcChhhhHHhCCcCc
Confidence 347899999999999997421100 0 00 0 00 0 12357999999999999764
No 221
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=97.26 E-value=0.00046 Score=61.73 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=31.6
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCC-CcccceEEEe
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE-GVCGSDAMNI 619 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~-g~Cg~C~V~v 619 (786)
+.+|+++.| +|||+|+++.|+. ....|+. |.||.|.|.|
T Consensus 12 ~~~v~~~~G-~tLl~a~~~~gi~------i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 12 ERTVKAPVG-MSLLEAAHENDIE------LEGACEGSLACSTCHVIV 51 (117)
T ss_pred EEEEEECCC-CcHHHHHHHcCCC------CCccCCCcceeCCCEEEE
Confidence 456677776 8999999999883 2357995 9999999999
No 222
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=97.26 E-value=0.00036 Score=84.68 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=52.3
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCccccc-CCCCCcccceEEEeCCcccccccccccc--cCcceEECCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRR-SCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLP 644 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~-~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~ 644 (786)
.++++++++ +++|++|+..+. ..... +|..|.||+|.|.|||+++.||.+++.. |.++.|||-|.
T Consensus 7 ~~~~~~~~~-~~l~~~LR~~~l-----~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~ 74 (951)
T TIGR03313 7 PQTLECKLG-ENVQTLLFNMGM-----HSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLG 74 (951)
T ss_pred EEEEecCCC-CCHHHHHHHCCC-----CCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCC
Confidence 557777776 899999999532 12344 7999999999999999999999999864 46778888884
No 223
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=97.25 E-value=0.00042 Score=60.36 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=30.2
Q ss_pred EEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEeC
Q psy9575 577 VNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNIN 620 (786)
Q Consensus 577 v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vn 620 (786)
...+.+ .||||+|.+.|+. ...+||.|.||+|.|+|.
T Consensus 17 ~~~~~g-~tiLe~a~~~gi~------i~~~C~~g~C~TC~v~v~ 53 (102)
T COG0633 17 EAVNEG-ETLLEAAERNGIP------IEYACRGGACGTCRVKVL 53 (102)
T ss_pred EeccCC-cHHHHHHHHCCCc------ceecCCCCccCccEEEEe
Confidence 333445 8999999999883 457899999999999985
No 224
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=97.25 E-value=5e-05 Score=65.04 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=16.0
Q ss_pred chhhCcccCcccCCCCCc
Q psy9575 693 GLYECILCGCCSTACPSF 710 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~ 710 (786)
+.++|+.||.|+.+||..
T Consensus 19 ~~~~Ci~C~~Cv~~CP~~ 36 (91)
T TIGR02936 19 DQEKCIGCGRCYKVCGRD 36 (91)
T ss_pred CHhHCCCcchHHHHcChh
Confidence 478999999999999964
No 225
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.24 E-value=0.00096 Score=76.76 Aligned_cols=60 Identities=27% Similarity=0.267 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 121 ~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+..+...|.+.+++.|++++.++++.++..++ +.. -+. ..+|+ .+.++.||+|||...
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~~-~V~---~~~g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA-GLI-EVE---LANGA--VLKAKTVILATGARW 322 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeE-EEE---ECCCC--EEEcCEEEECCCCCc
Confidence 4677899999999999999999999999998764 322 122 24554 588999999999855
No 226
>PTZ00038 ferredoxin; Provisional
Probab=97.22 E-value=0.00034 Score=67.22 Aligned_cols=38 Identities=29% Similarity=0.538 Sum_probs=30.7
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
..++++++ +|||||+++.|+. ...+|+.|.||.|.|+|
T Consensus 107 ~~~~v~~g-eTILdAae~aGI~------lp~sCr~G~CGtCkvrV 144 (191)
T PTZ00038 107 KVIECDED-EYILDAAERQGVE------LPYSCRGGSCSTCAAKL 144 (191)
T ss_pred EEEEeCCC-CcHHHHHHHcCCC------CCcCCCCccCCCCEeEE
Confidence 34555666 8999999999883 34679999999999988
No 227
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.21 E-value=9.6e-05 Score=70.90 Aligned_cols=57 Identities=30% Similarity=0.558 Sum_probs=33.0
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.||.|+.+||...... ..+...+.+. ...... ......|+.||.|+.+||++
T Consensus 58 ~~~Ci~Cg~C~~aCP~~~~~~-----------~~~~~~~~~~----~~~~~~--~id~~~C~~Cg~C~~~CP~~ 114 (167)
T CHL00014 58 FDKCIACEVCVRVCPIDLPVV-----------DWKLETDIRK----KRLLNY--SIDFGVCIFCGNCVEYCPTN 114 (167)
T ss_pred cccCCCcCcHHHhCCCCCccc-----------cccccccccc----cccccc--cCCCCcCcCccchHhhcCcC
Confidence 689999999999999752100 0000000000 000000 11235699999999999987
No 228
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.20 E-value=5.8e-05 Score=73.26 Aligned_cols=52 Identities=33% Similarity=0.631 Sum_probs=33.0
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.||.|+.+||....... .+. ....+.. ......|+.||.|+++||++
T Consensus 37 ~~~Ci~Cg~Cv~aCP~~Ai~~~---------------~~~---~~~~~~~----~~~~~~C~~Cg~C~~~CPt~ 88 (181)
T PRK08222 37 PSQCIACGACTCACPANALTIQ---------------TDD---QQNSRTW----QLYLGRCIYCGRCEEVCPTR 88 (181)
T ss_pred hhhCcchhHHHHhCCccceEcc---------------ccc---ccCccce----eeccCcCcCCCCcccccCcC
Confidence 7899999999999997532110 000 0000000 11236799999999999986
No 229
>PRK06991 ferredoxin; Provisional
Probab=97.19 E-value=5.2e-05 Score=77.82 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=32.1
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.+.||.||.|+.+||+...... +.. ...+ ....|+.||.|+.+||++
T Consensus 84 ~~~CigCg~Cv~aCP~~AI~~~----~~~-------------------~~~v----~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 84 EQLCIGCTLCMQACPVDAIVGA----PKQ-------------------MHTV----LADLCTGCDLCVPPCPVD 130 (270)
T ss_pred cccCCCCcHHHHhCCHhheecc----ccc-------------------ceee----CHhhCCCchHHHhhCCcC
Confidence 6899999999999996421100 000 0000 135799999999999988
No 230
>PRK06126 hypothetical protein; Provisional
Probab=97.19 E-value=0.0054 Score=71.27 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+...|.+.+++. |++|++++.++++..++ +.|. +.+.+..+|+...++|+.||.|+|..+.
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDA-DGVT-ATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECC-CeEE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 4667888888764 89999999999998876 6565 4455556677678999999999998874
No 231
>KOG2844|consensus
Probab=97.18 E-value=0.0023 Score=71.51 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
....+..+|+..|++.|+.|+++++|++|.... +++.||.+ .-| .|++..||-|||=|+
T Consensus 185 DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT---~~G---~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 185 DPAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVET---PHG---SIETECVVNAAGVWA 243 (856)
T ss_pred CHHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceec---cCc---ceecceEEechhHHH
Confidence 346788999999999999999999999999986 66668776 557 589999999999776
No 232
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.16 E-value=0.008 Score=66.58 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
...+.+.|.+.+.+.|++++ ...++++..++ +....+.+ .+|+ .++|+.||.|+|..+
T Consensus 84 ~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~---~~g~--~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 84 STRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYC---AGGQ--RIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEe---CCCC--EEEeCEEEECCCCch
Confidence 45788899999988899986 55788887663 44344433 4453 589999999999876
No 233
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.15 E-value=0.00011 Score=72.01 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=32.3
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+.++||.||+|+++||...... ..+ . .... ....|+.||.|+.+||++.
T Consensus 112 d~~~Ci~Cg~Cv~aCp~~ai~~-----------------~~~--~----~~~v----~~~~C~~Cg~Cv~vCP~~A 160 (191)
T PRK05113 112 DEDNCIGCTKCIQACPVDAIVG-----------------ATK--A----MHTV----ISDLCTGCDLCVAPCPTDC 160 (191)
T ss_pred eCCcCCCCChhhhhCCHhhhec-----------------ccC--C----ceee----cCCcCCchHHHHHHcCcCc
Confidence 3789999999999998531100 000 0 0001 1357999999999999864
No 234
>PLN00071 photosystem I subunit VII; Provisional
Probab=97.12 E-value=7.7e-05 Score=62.29 Aligned_cols=55 Identities=24% Similarity=0.494 Sum_probs=32.7
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||..........+ ....... .......|+.||.|+.+||++.
T Consensus 8 ~~~C~~C~~C~~~CP~~~i~~~~~~~-----------------~~~~~~~---~~~~~~~C~~Cg~C~~~CP~~A 62 (81)
T PLN00071 8 YDTCIGCTQCVRACPTDVLEMIPWDG-----------------CKAKQIA---SAPRTEDCVGCKRCESACPTDF 62 (81)
T ss_pred CCcCcChhHHHHHCCccceeeecccc-----------------ccccccc---CcCCCCcCcChhhHHhhcCCcc
Confidence 67999999999999964211000000 0000000 0012357999999999999874
No 235
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.11 E-value=0.00012 Score=76.27 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=32.7
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||+.... .|. ..+.+.. . ......|+.||.|+++||++.
T Consensus 207 ~~~C~~C~~C~~~CP~~~i~-----~~~---------~~~~~~~----~-----~i~~~~C~~Cg~Cv~~CP~~A 258 (271)
T PRK09477 207 RQKCTRCMDCFHVCPEPQVL-----RPP---------LKGKQSP----S-----QVTSGDCITCGRCIDVCSEDV 258 (271)
T ss_pred cccCcccCCcCCcCCCccee-----ccc---------ccCCCcc----c-----eeCcccCcChhHHHhhcCccc
Confidence 67999999999999974211 010 0000000 0 012356999999999999863
No 236
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=97.10 E-value=0.00072 Score=59.90 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=30.9
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEe
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNI 619 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~v 619 (786)
...+++.++ +|||+||++.|+. ...+|+ .|.||+|.|.|
T Consensus 15 ~~~~~~~~g-~tLL~a~~~~gi~------i~~~CgG~G~CgtC~v~V 54 (110)
T TIGR02007 15 GAVVEAKPG-ETILDVALDNGIE------IEHACEKSCACTTCHCIV 54 (110)
T ss_pred CeEEEECCC-ChHHHHHHHcCCC------ccccCCCCceeCCCEEEE
Confidence 345666666 8999999998883 335799 59999999888
No 237
>KOG2820|consensus
Probab=97.10 E-value=0.0039 Score=64.34 Aligned_cols=65 Identities=17% Similarity=0.078 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecC-CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDS-EGDILGVVALEMETGNIMILESKITILATGGGGRIWAAS 193 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~-~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~ 193 (786)
..-+++|...++++|+.|+.+..++.+...+ ++..++|.+ .+|. .+.||.+|+|+|.|.+-+.++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~T---t~gs--~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQT---TDGS--IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEe---ccCC--eeecceEEEEecHHHHhhcCc
Confidence 4567899999999999999999887765322 367777776 4564 478999999999998766554
No 238
>PLN03136 Ferredoxin; Provisional
Probab=97.10 E-value=0.0006 Score=63.13 Aligned_cols=38 Identities=34% Similarity=0.454 Sum_probs=30.6
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
.+++++++ +|||||+.+.|+. ...+|+.|.||+|.+.|
T Consensus 66 ~~~~~~~g-~tILdAa~~~Gi~------lp~sCr~G~CGtC~~~l 103 (148)
T PLN03136 66 QEVECEED-VYVLDAAEEAGID------LPYSCRAGSCSSCAGKV 103 (148)
T ss_pred EEEEeCCC-CcHHHHHHHcCCC------CCcCCCCccCCCCEEEE
Confidence 34555565 8999999999883 34569999999999988
No 239
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=97.09 E-value=0.00011 Score=67.49 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=32.8
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+.++|+.|+.|+.+||..... .+ +. . ...+ ....|+.||.|+.+||++.
T Consensus 57 d~~~Ci~C~~C~~~CP~~ai~-------------~~---~~---~----~~~i----~~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 57 NNEICINCFNCWVYCPDAAIL-------------SR---DK---K----LKGV----DYSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred ehhHCcChhhHHHhCCHhheE-------------ec---CC---c----eEEe----CcCcCcChhHHHHHCCcCc
Confidence 378999999999999853110 00 00 0 0001 1356999999999999985
No 240
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=97.08 E-value=0.00016 Score=76.77 Aligned_cols=65 Identities=22% Similarity=0.479 Sum_probs=39.9
Q ss_pred hchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC----
Q psy9575 692 DGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG---- 767 (786)
Q Consensus 692 ~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g---- 767 (786)
.+.++|+.||+|+.+||..... . .+..+.. . ........|..||.|+.+||++
T Consensus 45 ~~~~~C~~C~~C~~~Cp~~a~~----~---------~~~~~~~---~-------~~~~~~~~C~~Cg~C~~~CP~~Ai~~ 101 (295)
T TIGR02494 45 FKENRCLGCGKCVEVCPAGTAR----L---------SELADGR---N-------RIIIRREKCTHCGKCTEACPSGALSI 101 (295)
T ss_pred EccccCCCCchhhhhCcccccc----c---------ccccCCC---c-------ceeechhhcCchhHhhccCcHhHHhh
Confidence 3478999999999999975211 0 0000000 0 0011346799999999999964
Q ss_pred ----CChHHHHHHHHH
Q psy9575 768 ----LNPNRSINKIKE 779 (786)
Q Consensus 768 ----i~~~~~i~~lr~ 779 (786)
++..+++..+.+
T Consensus 102 ~g~~~t~eel~~~i~~ 117 (295)
T TIGR02494 102 VGEEMTVEEVMRVVLR 117 (295)
T ss_pred hccCCcHHHHHHHHHH
Confidence 345566665554
No 241
>COG1146 Ferredoxin [Energy production and conversion]
Probab=97.06 E-value=0.00013 Score=58.59 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=33.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.|+.|+.+||...+....-. .. .. .......|+.||.|..+||++
T Consensus 7 ~~~C~~c~~C~~~CP~~~~~~~~~~-------------~~-------~~----~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 7 YDKCIGCGICVEVCPAGVFDLGEDE-------------GG-------KP----VVARPEECIDCGLCELACPVG 56 (68)
T ss_pred chhcCCCChheeccChhhEEecccc-------------Cc-------ce----eEeccccCccchhhhhhCCcc
Confidence 6789999999999998643211000 00 00 011346799999999999998
No 242
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=97.06 E-value=0.00014 Score=74.98 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=32.3
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|.++||+...... . .+ . ... . . .....|+.||+|+++||.+.
T Consensus 200 ~~~C~~C~~C~~vCP~~~vl~~-----~-----~~----~---~~~--~-~----i~~~~C~~Cg~Cv~~CP~~A 250 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQVLRM-----P-----LK----K---GGS--T-L----VLSGDCTLCGRCIDVCHEDV 250 (255)
T ss_pred cccCeEcCCccCcCCCCceeec-----c-----cc----C---CCc--e-E----eccccccchhHHHHhCCccc
Confidence 5799999999999997421100 0 00 0 000 0 0 02356999999999999863
No 243
>PLN02463 lycopene beta cyclase
Probab=97.04 E-value=0.037 Score=62.11 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
...+.+.|.+++.+.||+++ ...|+++..++ +. ..+.+ .+|+ .++|+.||.|+|..+.
T Consensus 113 R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~-~~V~~---~dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 113 RKKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SK-SLVVC---DDGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-Ce-EEEEE---CCCC--EEEcCEEEECcCCCcC
Confidence 35678888888888899986 56888887764 43 33433 4563 6899999999997653
No 244
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.04 E-value=0.00016 Score=79.13 Aligned_cols=63 Identities=21% Similarity=0.408 Sum_probs=35.2
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
+.++|+.||+|+++||....... .+..... .................|+.||.|+.+||.+.-
T Consensus 5 d~~kCi~Cg~Cv~~CP~~ai~~~-----------~~~~~~~---~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 5 DMSKCIGCGRCVRACTNVQIVGA-----------LGFLNRG---GKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred chhhCCcChHhhhhCCHhhcccc-----------ccccccC---CccccccccccccCcccCcCccCHHHhCCCChh
Confidence 37899999999999997532210 0000000 000000000011234679999999999997654
No 245
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.04 E-value=7.1e-05 Score=59.96 Aligned_cols=17 Identities=47% Similarity=0.989 Sum_probs=14.9
Q ss_pred hCcccCcccCCCCCccc
Q psy9575 696 ECILCGCCSTACPSFWW 712 (786)
Q Consensus 696 ~CI~Cg~C~~~CP~~~~ 712 (786)
.|+.|++|+++||+...
T Consensus 1 ~C~~C~~C~~~CP~~AI 17 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAI 17 (67)
T ss_pred CCcchhHHHHhCcHhhc
Confidence 49999999999998754
No 246
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=97.01 E-value=0.00024 Score=61.80 Aligned_cols=52 Identities=25% Similarity=0.453 Sum_probs=33.7
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++||.||.|+.+||+..... ..+.. . ... .......|+.||.|..+||++.
T Consensus 28 ~~~Ci~Cg~C~~~CP~~ai~~---------------~~~~~--~----~~~--~~~~~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 28 AEKCIGCGLCVKVCPTGAIEL---------------IEEGL--L----LPE--VVIDPDLCVLCGACLKVCPVDA 79 (99)
T ss_pred ccccCCCCCchhhCCHHHhhc---------------ccccC--c----cce--EEEccccCccccchHhhCCcCC
Confidence 678999999999999852110 00000 0 000 0112467999999999999987
No 247
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.99 E-value=0.00018 Score=63.05 Aligned_cols=18 Identities=28% Similarity=0.770 Sum_probs=16.1
Q ss_pred chhhCcccCcccCCCCCc
Q psy9575 693 GLYECILCGCCSTACPSF 710 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~ 710 (786)
+.++|+.|+.|+.+||..
T Consensus 14 d~~~Ci~C~~Cv~aCP~~ 31 (103)
T PRK09626 14 DESRCKACDICVSVCPAG 31 (103)
T ss_pred CcccccCCcchhhhcChh
Confidence 478999999999999975
No 248
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.91 E-value=0.00023 Score=62.40 Aligned_cols=48 Identities=21% Similarity=0.446 Sum_probs=32.0
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||....... .. . ...+ ....|+.|+.|+.+||.+.
T Consensus 50 ~~~Ci~C~~C~~~CP~~ai~~~-----------------~~--~----~~~i----d~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09624 50 RDKCVRCYLCYIYCPEPAIYLD-----------------EE--G----YPVF----DYDYCKGCGICANECPTKA 97 (105)
T ss_pred hhHCcChhhHHhhCCHhhEEec-----------------CC--C----cEEE----CchhCCCcCchhhhcCcCc
Confidence 7899999999999996421100 00 0 0001 1247999999999999763
No 249
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.91 E-value=0.006 Score=72.30 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=31.2
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLEL 403 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~ 403 (786)
|++||+||+||++ +|. ....+|+..|++||.++.+|+.
T Consensus 615 Ts~~gVfAaGD~~-~g~--------~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAV-RGA--------DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcC-CCC--------cHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998 222 2357888889999999999874
No 250
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.88 E-value=0.00017 Score=70.18 Aligned_cols=52 Identities=29% Similarity=0.556 Sum_probs=32.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.|+.|+.+||........ +.. ... ... ......|+.||.|+.+||.+
T Consensus 37 ~~~C~~C~~Cv~~CP~~ai~~~~---------------~~~-~~~--~~~----~i~~~~C~~Cg~C~~vCP~~ 88 (180)
T PRK12387 37 PQQCIGCAACVNACPSNALTVET---------------DLA-TGE--LAW----EFNLGRCIFCGRCEEVCPTA 88 (180)
T ss_pred hhhCcChhHHHHhcCccCeEeec---------------ccc-CCc--ccc----eeccccCcCccchhhhcCcC
Confidence 78999999999999974221100 000 000 000 11246799999999999986
No 251
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.86 E-value=0.00023 Score=42.07 Aligned_cols=17 Identities=53% Similarity=1.247 Sum_probs=15.4
Q ss_pred chhhCcccCcccCCCCC
Q psy9575 693 GLYECILCGCCSTACPS 709 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~ 709 (786)
|.++||.|++|+.+||+
T Consensus 6 D~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 6 DLERCIGCGACEVACPV 22 (22)
T ss_pred ccccccCchhHHHhhCc
Confidence 48999999999999984
No 252
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.86 E-value=0.0012 Score=74.27 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=35.2
Q ss_pred hcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 135 LHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 135 ~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.||+++.+++|+++..++ .. +.+.+..+++...+.+|.+|||||+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~-~~---v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER-QT---VTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC-CE---EEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 34699999999999997764 33 2232222344456789999999998764
No 253
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.82 E-value=0.0012 Score=80.34 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=52.7
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccc-cCCCCCcccceEEEeCCcccccccccccc--cCcceEECCCC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLR-RSCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLP 644 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~-~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~ 644 (786)
.++++++++ +|||++|+.++.. ... +.|..|.||+|.|.|||+++.||.+++.. |.++.|+|-|.
T Consensus 11 ~~~~~~~~~-~~l~~~LR~~~~~-----~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~ 78 (956)
T PRK09800 11 PQELTVNPG-ENVQKLLFNMGMH-----SVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLG 78 (956)
T ss_pred EEEEecCCC-CCHHHHHHHCCCC-----ccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcC
Confidence 557777776 8999999995542 334 45889999999999999999999999864 46788899884
No 254
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=96.81 E-value=0.00017 Score=62.86 Aligned_cols=51 Identities=20% Similarity=0.528 Sum_probs=32.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
.++|+.|+.|+.+||........ .+. . .. . .....|+.||.|..+||++.-
T Consensus 33 ~~~C~~C~~C~~~CP~~~i~~~~---------------~g~---~--~~-~----i~~~~C~~Cg~C~~~CP~~Ai 83 (101)
T TIGR00402 33 SAVCTRCGECASACENNILQLGQ---------------QGQ---P--TV-E----FDNAECDFCGKCAEACPTNAF 83 (101)
T ss_pred cCcCcChhHHHHHcCcccceecc---------------CCc---e--ee-E----ecCccCcCccChhhHCCcccc
Confidence 57999999999999974221100 000 0 00 0 122469999999999998753
No 255
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.81 E-value=0.00043 Score=37.21 Aligned_cols=15 Identities=40% Similarity=1.088 Sum_probs=13.6
Q ss_pred ccccccchhhCCCCC
Q psy9575 754 CRSIMNCVDTCPKGL 768 (786)
Q Consensus 754 C~~Cg~C~~vCP~gi 768 (786)
|+.|+.|+++||++.
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 889999999999973
No 256
>PRK06184 hypothetical protein; Provisional
Probab=96.80 E-value=0.019 Score=66.04 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+.|++++.+++++++..++ +.|... ..+..+ ...++|+.||.|+|..+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~v~-~~~~~~--~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDA-DGVTAR-VAGPAG--EETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEEEE-EEeCCC--eEEEEeCEEEECCCCchH
Confidence 466788888888899999999999998875 554432 222122 347999999999998874
No 257
>PRK09897 hypothetical protein; Provisional
Probab=96.78 E-value=0.022 Score=65.14 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCC--ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 126 LLHTLYQRNLHAK--TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 126 i~~~L~~~~~~~G--v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
....+.+.+.+.| ++++.+++|+++..++ +. +.+.. .++. ..+.|+.||||||+..
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g---~~V~t-~~gg-~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN-AG---VMLAT-NQDL-PSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CE---EEEEE-CCCC-eEEEcCEEEECCCCCC
Confidence 3445556666666 7888899999998775 43 22221 2321 3578999999999753
No 258
>PRK08764 ferredoxin; Provisional
Probab=96.77 E-value=0.00045 Score=63.68 Aligned_cols=48 Identities=25% Similarity=0.489 Sum_probs=31.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++||.|++|+++||....... .+ . .... ....|+.||.|+.+||++.
T Consensus 84 ~~~Ci~C~~Cv~aCp~~ai~~~-----------------~~--~----~~~v----~~~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 84 EADCIGCTKCIQACPVDAIVGG-----------------AK--H----MHTV----IAPLCTGCELCVPACPVDC 131 (135)
T ss_pred cccCcCcchHHHhCChhhcCcc-----------------CC--C----ceee----cCCcCcCccchhhhcCccc
Confidence 4799999999999995321100 00 0 0001 2357999999999999874
No 259
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.75 E-value=0.00033 Score=67.02 Aligned_cols=49 Identities=27% Similarity=0.506 Sum_probs=32.6
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+.++|+.|++|+++||....... . + . .... ....|+.||.|+.+||++.
T Consensus 111 d~~~Ci~Cg~C~~aCp~~ai~~~-----------------~-~-~----~~~i----~~~~C~~Cg~Cv~~CP~~A 159 (165)
T TIGR01944 111 DEDNCIGCTKCIQACPVDAIVGA-----------------A-K-A----MHTV----IADECTGCDLCVEPCPTDC 159 (165)
T ss_pred ECCcCCChhHHHHhCCccceEec-----------------C-C-C----ceEe----ecccccChhHHHHhcCcCc
Confidence 47899999999999995311100 0 0 0 0001 1257999999999999864
No 260
>PRK06185 hypothetical protein; Provisional
Probab=96.74 E-value=0.011 Score=65.99 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+.+. |++++.++.++++..++ +++.|+.+.. .+|+ ..++|+.||.|+|+.+.
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRART-PDGP-GEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEc-CCCc-EEEEeCEEEECCCCchH
Confidence 35777888888764 89999999999999886 8888876643 3443 46899999999999884
No 261
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.72 E-value=0.0083 Score=63.42 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+++.|++++.+++++++..++ +.+. +.. .++ ...++|+.||+|+|..+.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~-~~~---~~~-~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVV-VIV---RGG-EGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEE-EEE---cCc-cEEEEeCEEEECCCcchH
Confidence 4677889999988999999999999998875 5432 221 222 236899999999998763
No 262
>PRK06834 hypothetical protein; Provisional
Probab=96.71 E-value=0.016 Score=66.04 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+++.||+|++++.++++..++ +.|. +.. .+|+ .++|+.||.|+|+.+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v~-v~~---~~g~--~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TGVD-VEL---SDGR--TLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeEE-EEE---CCCC--EEEeCEEEEecCCCCC
Confidence 567788888888899999999999999876 4332 222 4554 6899999999998873
No 263
>KOG2415|consensus
Probab=96.65 E-value=0.0028 Score=66.82 Aligned_cols=66 Identities=21% Similarity=0.396 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEc---CCCc-------EEEEEeCeEEEcCCCCCcc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEM---ETGN-------IMILESKITILATGGGGRI 189 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~---~~g~-------~~~i~AkaVVlATGG~~~~ 189 (786)
.++++-|-+++++.||+|+.+..+.+++.++||.|.|+.+.|. .+|. -..|.|+..|+|-|--+.+
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 3688899999999999999999999999998899999987652 2231 2468999999999977754
No 264
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.62 E-value=0.0053 Score=61.11 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
++.++.+.|...+++.++++.+++.|+++..++ ++ ..+..+++ ..++|+.||+|||.++.
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-~~----w~v~~~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG-DG----WTVTTRDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEET-TT----EEEEETTS---EEEEEEEEE---SSCS
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEec-cE----EEEEEEec--ceeeeeeEEEeeeccCC
Confidence 456788888888888899999999999999986 54 22223566 46789999999997663
No 265
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=96.60 E-value=0.00023 Score=76.00 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=32.0
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.||.|+++||...... ..+ .+. .. . .....|+.||.|+.+||++
T Consensus 168 ~~~C~~Cg~C~~~Cp~~a~~a------------i~~-~~~-------~~-~----id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 168 ADRCIGCGACVKVCKKKAVGA------------LSF-ENY-------KV-V----RDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred CccCCcchHHHHhcChhhcCc------------eec-cCC-------eE-E----eCCCcCcCcchhhhhCCHh
Confidence 689999999999999632100 000 000 00 0 1235799999999999986
No 266
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.59 E-value=0.0005 Score=60.39 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=32.1
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+.++|+.|+.|+.+||..... + .. + .. .. .....|..||.|+.+||.+.
T Consensus 49 ~~~~Ci~C~~C~~~CP~~ai~---------------~--~~-~-~~----~~----id~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09623 49 DESKCVKCYICWKFCPEPAIY---------------I--KE-D-GY----VA----IDYDYCKGCGICANECPTKA 97 (105)
T ss_pred CcccCccccchhhhCCHhheE---------------e--cC-C-Cc----EE----eCchhCcCcchhhhhcCcCc
Confidence 378999999999999863110 0 00 0 00 00 12356999999999999863
No 267
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=96.57 E-value=0.00059 Score=56.46 Aligned_cols=48 Identities=23% Similarity=0.486 Sum_probs=32.1
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||....... .+. ...+ ....|+.|+.|+.+||.+.
T Consensus 24 ~~~C~~C~~C~~~Cp~~ai~~~---------------~~~--------~~~i----~~~~C~~C~~C~~~CP~~A 71 (78)
T TIGR02179 24 KEKCIKCKNCWLYCPEGAIQED---------------EGG--------FVGI----DYDYCKGCGICANVCPVKA 71 (78)
T ss_pred CCcCcChhHHHhhcCccceEec---------------CCC--------cEEe----cCccCcCccchhhhCCccc
Confidence 6899999999999996421100 000 0001 1246999999999999864
No 268
>PRK05713 hypothetical protein; Provisional
Probab=96.56 E-value=0.0024 Score=68.38 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=41.7
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe-CCc-----------------cccccccccccc
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI-NGK-----------------NGLACITNLNEL 634 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v-nG~-----------------~~laC~t~v~~~ 634 (786)
..+|+++++ +|||||+.+.|+.+ ..+|+.|.||+|.|+| +|. .+|+|.+.+...
T Consensus 8 ~~~~~~~~g-~tlL~a~~~~gi~~------~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d 79 (312)
T PRK05713 8 ERRWSVPAG-SNLLDALNAAGVAV------PYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGD 79 (312)
T ss_pred CeEEEECCC-CcHHHHHHHcCCCC------CcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCc
Confidence 345677776 89999999998832 3679999999999998 332 247999998743
No 269
>PLN02985 squalene monooxygenase
Probab=96.55 E-value=0.019 Score=65.77 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+.+.|.+++++. ||++..+ .+++++.++ +.+.|+...+ .+|+...+.|+.||.|.|.++..
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 6788899988776 7998865 588888775 7888988754 46766678899999999998853
No 270
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.54 E-value=0.00047 Score=42.39 Aligned_cols=18 Identities=39% Similarity=0.864 Sum_probs=15.9
Q ss_pred chhhCcccCcccCCCCCc
Q psy9575 693 GLYECILCGCCSTACPSF 710 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~ 710 (786)
+.++|+.||.|+.+||..
T Consensus 5 d~~~C~~Cg~C~~~Cp~~ 22 (24)
T PF12837_consen 5 DPDKCIGCGDCVRVCPEG 22 (24)
T ss_pred ChhhCcChhHHHHhcchh
Confidence 378999999999999963
No 271
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.54 E-value=0.00052 Score=68.87 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=31.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.||.|.++|+...... ...+ .-....+.|..||.|..+||.+
T Consensus 68 ~e~C~~CG~C~~vC~f~Ai~~----------------~~~~-----------~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 68 PEKCIRCGKCAEVCRFGAIVV----------------LPGG-----------KPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred hhhccccCcHHHhCCCCeEEE----------------cCCC-----------ceecCcccccCcccceeeCCCc
Confidence 678999999999997642100 0000 0001247899999999999987
No 272
>PRK10194 ferredoxin-type protein; Provisional
Probab=96.53 E-value=0.00038 Score=66.66 Aligned_cols=17 Identities=35% Similarity=0.876 Sum_probs=14.4
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.||.|+++||..
T Consensus 33 ~~~C~~Cg~C~~aCp~~ 49 (163)
T PRK10194 33 LTHCTRCDACINACENN 49 (163)
T ss_pred hhhCcChhHHHHHcChh
Confidence 57899999999999864
No 273
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.49 E-value=0.0005 Score=56.34 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=32.2
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK 766 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 766 (786)
.++||+|..|.--||.......+.... . ...-..|-.||-|+.+||+
T Consensus 34 ~~kCi~C~~C~~yCPe~~i~~~~~~~~-----------------------~---~idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 34 EDKCINCKLCWLYCPEPAILEEEGGYK-----------------------V---RIDYDYCKGCGICANVCPV 80 (91)
T ss_pred ccccccCceeEEECCchheeeccCCcc-----------------------c---eeEcccccCceechhhCCh
Confidence 789999999999999753221100000 0 0123579999999999998
No 274
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.45 E-value=0.016 Score=64.12 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCC-ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAK-TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~G-v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+.+.| ++++.++.|+++..++ +.+. +.. .+|+ .+.++.||.|.|..+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~-v~~---~~g~--~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVE-LTL---DDGQ--QLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeE-EEE---CCCC--EEEeeEEEEeCCCCCH
Confidence 367888999998887 9999999999998775 5442 322 4564 5889999999998763
No 275
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=96.43 E-value=0.001 Score=67.08 Aligned_cols=46 Identities=24% Similarity=0.539 Sum_probs=34.0
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
..+|+.||.|++.||+...... + ....+...|+.|++|.++||.|.
T Consensus 192 e~kc~~c~~cv~~cp~~Ai~~~------------~-----------------~~~I~~~~ci~c~~c~~ac~~ga 237 (354)
T COG2768 192 EEKCYDCGLCVKICPVGAITLT------------K-----------------VVKIDYEKCIGCGQCMEACPYGA 237 (354)
T ss_pred eecccccchhhhhCCCcceecc------------c-----------------ceeechhhccchhhhhhhccCcc
Confidence 4799999999999998633210 0 01123467999999999999886
No 276
>PRK06847 hypothetical protein; Provisional
Probab=96.42 E-value=0.038 Score=60.86 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
...+.+.|.+.+.+.|+++++++.++++..++ +.+ .+.. .+|+ .+.|+.||.|+|..+..
T Consensus 106 r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~~-~v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 106 RPALARILADAARAAGADVRLGTTVTAIEQDD-DGV-TVTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CEE-EEEE---cCCC--EEEcCEEEECcCCCcch
Confidence 35678889998888899999999999998764 432 2332 4564 57899999999987743
No 277
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.41 E-value=0.03 Score=67.86 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCC
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATG 184 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATG 184 (786)
.+...+.+.+++.||+++.++.+.++..++++.+.++.. .+|+ .+.++.||+|+|
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~---~dG~--~i~~D~Vv~A~G 242 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF---ADGS--ELEVDFIVFSTG 242 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE---CCCC--EEEcCEEEECCC
Confidence 344566777778899999999999987643244444443 4564 578999999998
No 278
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=96.39 E-value=0.0031 Score=76.16 Aligned_cols=64 Identities=27% Similarity=0.462 Sum_probs=51.7
Q ss_pred EEEcCCCChhHHHHHHH-chhccCCCcccccCCCCCcccceEEEeCCcccccccccccc--cCcceEECCCCC
Q psy9575 576 LVNLSSNDKMLLDALHR-IKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNE--LKQPIIIRPLPG 645 (786)
Q Consensus 576 ~v~~~~~~~tiL~al~~-~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t~v~~--~~~~~~i~p~~~ 645 (786)
+++++++ +|+|++|+. ++. .....+|..|.||+|.|.|||+++.||.+++.. |.++.|+|-+..
T Consensus 9 ~~~~~~~-~~l~~~lr~~~~~-----~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~ 75 (848)
T TIGR03311 9 EVDVNEE-KKLLEFLREDLRL-----TGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTE 75 (848)
T ss_pred EeeCCCC-CcHHHHHHHhcCC-----CcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCC
Confidence 4566666 899999997 333 245678999999999999999999999999964 467788988853
No 279
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.39 E-value=0.00077 Score=72.83 Aligned_cols=57 Identities=28% Similarity=0.574 Sum_probs=32.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK 766 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 766 (786)
..+|+.||.|+.+||.....-... +. ..++.. ............|+.||.|..+||.
T Consensus 11 ~~~C~gCg~C~~~CP~~aI~~~~~--~~--------~~~~~~------~~~~~~~~d~~~C~~Cg~C~~vCP~ 67 (341)
T PRK09326 11 YDVCTACGACEAVCPIGAITVDKK--AE--------IRDPND------LELYEKGAAPNVCEGCLTCSRICPV 67 (341)
T ss_pred cccCcChHHHHHhCCHhhhecccC--cc--------cccccc------hhhhccCCCcCcCcCcCchhhhCCC
Confidence 789999999999999642211000 00 000000 0001111234689999999999997
No 280
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.39 E-value=0.018 Score=63.82 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+++.|+++++++.++++..++ +.+. +.. .+|+ .+.|+.||.|+|..+.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~---~~g~--~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRVR-LRL---DDGR--RLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeEE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 4678889999988999999999999998775 4432 322 4554 5899999999998773
No 281
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.38 E-value=0.00064 Score=61.95 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=32.2
Q ss_pred hhhCcccC-----cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCG-----CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg-----~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+ .|+.+||.....-+ .. .. ... ......|+.||.|+.+||.+.
T Consensus 7 ~~~C~gC~~~~~~~Cv~~CP~~ai~~~-----------------~~--~~----~~~--~id~~~C~~Cg~Cv~~CP~~A 61 (132)
T TIGR02060 7 PTKCDGCKAGEKTACVYICPNDLMHLD-----------------TE--IM----KAY--NIEPDMCWECYSCVKACPQGA 61 (132)
T ss_pred cccccCccCCchhcCHhhcCccceEec-----------------CC--Cc----eee--ecCchhCccHHHHHHhCCcCc
Confidence 68999999 99999997421100 00 00 000 012357999999999999753
No 282
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.37 E-value=0.004 Score=69.86 Aligned_cols=65 Identities=25% Similarity=0.454 Sum_probs=52.2
Q ss_pred eEEE-EcCCCChhHHHHHHH-chhccCCCcccccCCCCCcccceEEEe----CC-----cccccccccccc--cCcceEE
Q psy9575 574 KFLV-NLSSNDKMLLDALHR-IKYDIDDSLTLRRSCREGVCGSDAMNI----NG-----KNGLACITNLNE--LKQPIII 640 (786)
Q Consensus 574 ~~~v-~~~~~~~tiL~al~~-~~~~~~~~l~~~~~Cr~g~Cg~C~V~v----nG-----~~~laC~t~v~~--~~~~~~i 640 (786)
.+++ +++++ +|+|+.|+. .+. -....+|..|.||+|.|.| || +++.||.+++.. |.++.|+
T Consensus 9 ~~~~~~~~~~-~~ll~~lR~~~~l-----~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 82 (467)
T TIGR02963 9 TVTLSDVDPT-RTLLDYLREDAGL-----TGTKEGCAEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVTV 82 (467)
T ss_pred EEEeecCCCC-CCHHHHHHHhcCC-----CCCCcccCCCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEec
Confidence 4567 57776 899999997 232 2446789999999999999 99 888899999964 4678889
Q ss_pred CCCC
Q psy9575 641 RPLP 644 (786)
Q Consensus 641 ~p~~ 644 (786)
|-+.
T Consensus 83 Egl~ 86 (467)
T TIGR02963 83 EDLR 86 (467)
T ss_pred CCCC
Confidence 9885
No 283
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.36 E-value=0.0012 Score=72.82 Aligned_cols=40 Identities=35% Similarity=0.790 Sum_probs=29.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK 766 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 766 (786)
.++|+.|+.|+.+||... + .+ +. ....|+.|+.|+++||.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi---~-----------~~---~~----------------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI---D-----------IR---DG----------------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCChhhhHHhCCCCC---E-----------eC---CC----------------CchhChhhhHHHHhCCC
Confidence 468999999999999641 0 00 00 12469999999999996
No 284
>KOG2403|consensus
Probab=96.34 E-value=0.0058 Score=66.98 Aligned_cols=242 Identities=5% Similarity=-0.219 Sum_probs=144.3
Q ss_pred EEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCcccCCCchHHHHHHHHCCCCccCCCcccccccc
Q psy9575 147 AIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTG 226 (786)
Q Consensus 147 v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~q~~p~~ 226 (786)
+.++.... .++.+.++.....|..+.+.+++-+.+++|.+..+..-.+....+++++.+--.+|+..
T Consensus 233 ~~d~~i~~-~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvqfhpt~i~g~Gc------------ 299 (642)
T KOG2403|consen 233 LEDGTIHR-FRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQFHPTGIYGAGC------------ 299 (642)
T ss_pred eeccccee-eeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceeeeeeecccccce------------
Confidence 34444443 56656555444567777788899999999998776655555556666655544444443
Q ss_pred ccCCCCccccccccCCcEEEcCCCCccccccCCccCCCCchhHHHHHHHHHHHhcCCCCCCCCeEEEeCCCCChhHHHhH
Q psy9575 227 VAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINR 306 (786)
Q Consensus 227 ~~~~~~~~~~~~~~~g~~~vn~~G~rf~~~~~p~~~~~~~~~~~~~~i~~~~~~g~g~~~~~~~v~ld~~~~~~~~~~~~ 306 (786)
+...|.....+.+...+...+..+++++.++.+....++.+..+...+-..+..+++..+.....+.-.-...+.-....
T Consensus 300 liteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~h~p~e~~~~~~p~is~ 379 (642)
T KOG2403|consen 300 LITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLSHLPPEPLKERLPGISE 379 (642)
T ss_pred eeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCCccchhhccCChhhhcccCCCcch
Confidence 11112222233444456667777888887766554344444555555545554444432222222211100000000111
Q ss_pred chhHHHHHHhhcCCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHH
Q psy9575 307 LPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLD 386 (786)
Q Consensus 307 ~~~~~~~~~~~~g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~ 386 (786)
.+.+...+.-..+.+|...++++.++.++++++.++....++ ..|..----.++.+||+..++|..+.+++..=..+..
T Consensus 380 ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~-g~d~vvpGL~a~GEaac~svHGANRLgaNSLLdlvvf 458 (642)
T KOG2403|consen 380 TAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREV-GQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVF 458 (642)
T ss_pred hhhhHhhcCccccccccCCCcccccCccccCCccceeeeccc-cccccccceeehhHHHHHhhhhhhhhhhhhhhHHHHH
Confidence 123333333335777888889999999999998877666655 4443333578999999999998888777777788999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy9575 387 LLVFGRSAGNHILSLE 402 (786)
Q Consensus 387 a~v~G~~Ag~~aa~~~ 402 (786)
+-+++...+++.-.-.
T Consensus 459 graca~~ia~~~~pg~ 474 (642)
T KOG2403|consen 459 GRACALSIAEELRPGD 474 (642)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999998877765544
No 285
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.34 E-value=0.0012 Score=73.80 Aligned_cols=17 Identities=41% Similarity=0.917 Sum_probs=15.3
Q ss_pred chhhCcccCcccCCCCC
Q psy9575 693 GLYECILCGCCSTACPS 709 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~ 709 (786)
+.++|+.|+.|..+||.
T Consensus 340 ~~~~C~~C~~C~~~Cp~ 356 (420)
T PRK08318 340 DQDKCIGCGRCYIACED 356 (420)
T ss_pred CHHHCCCCCcccccCCC
Confidence 36899999999999995
No 286
>KOG1298|consensus
Probab=96.34 E-value=0.013 Score=61.64 Aligned_cols=86 Identities=14% Similarity=0.143 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCccCccc-CCCchH
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNA-FINTGD 202 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~-~~~tGd 202 (786)
.+++.|.+++... +|++.++| |.+|+.|+ |.|.||...+ +.|+.....|.-.|+|-|-|+++- .+... ...+
T Consensus 148 RFvq~lR~ka~slpNV~~eeGt-V~sLlee~-gvvkGV~yk~-k~gee~~~~ApLTvVCDGcfSnlR-rsL~~~~v~~-- 221 (509)
T KOG1298|consen 148 RFVQRLRKKAASLPNVRLEEGT-VKSLLEEE-GVVKGVTYKN-KEGEEVEAFAPLTVVCDGCFSNLR-RSLCDPKVEE-- 221 (509)
T ss_pred HHHHHHHHHHhcCCCeEEeeee-HHHHHhcc-CeEEeEEEec-CCCceEEEecceEEEecchhHHHH-HHhcCCcccc--
Confidence 3667788777665 89887654 89999997 8999999887 445557788999999999998642 22221 1111
Q ss_pred HHHHHHHCCCCccCCC
Q psy9575 203 GLGMAARAGLPLEDME 218 (786)
Q Consensus 203 g~~~a~~aGa~l~~~e 218 (786)
..-.-+|.-+.|.+
T Consensus 222 --V~S~fVG~vl~N~~ 235 (509)
T KOG1298|consen 222 --VPSYFVGLVLKNCR 235 (509)
T ss_pred --cchheeeeeecCCC
Confidence 12345666666655
No 287
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.32 E-value=0.0018 Score=36.19 Aligned_cols=15 Identities=47% Similarity=1.291 Sum_probs=13.9
Q ss_pred hhCcccCcccCCCCC
Q psy9575 695 YECILCGCCSTACPS 709 (786)
Q Consensus 695 ~~CI~Cg~C~~~CP~ 709 (786)
++|+.|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 589999999999996
No 288
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.30 E-value=0.013 Score=66.53 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeec-CC--CCEEEEEEEEc-CCCcEEEEEeCeEEEcCCCCCccC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISD-SE--GDILGVVALEM-ETGNIMILESKITILATGGGGRIW 190 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~-~~--g~v~G~~~~~~-~~g~~~~i~AkaVVlATGG~~~~~ 190 (786)
..++..|.+.+++.||+|.++++|++|+.+ ++ ++|+|+.+... ....+....+|.||+|+||+..+-
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcccc
Confidence 578899999999999999999999999985 22 67999988531 122233455699999999998663
No 289
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0018 Score=66.72 Aligned_cols=61 Identities=25% Similarity=0.279 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecC-CCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDS-EGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~-~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
.|..+..+|.+.+++..|.++.-.++++|..-. .+..+-+.. .+|- .+++|.||||||..=
T Consensus 264 eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l---~nGa--vLkaktvIlstGArW 325 (520)
T COG3634 264 EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVEL---ANGA--VLKARTVILATGARW 325 (520)
T ss_pred cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEe---cCCc--eeccceEEEecCcch
Confidence 578899999999999999999999999998742 133333433 5664 689999999999643
No 290
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.29 E-value=0.032 Score=62.38 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+. ||++++++.++++..++ +.+. +.+ . .+++...++||.||.|.|..+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~~-v~~-~-~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAAT-VTL-E-IEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeeE-EEE-c-cCCcceEEeeeEEEEeCCCCch
Confidence 5778888888775 89999999999998765 4332 332 2 2333346999999999998774
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.0066 Score=66.83 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
.+.+.+.+.+... +..++ ...|.+|+.+++.+|+||++ .+|. .|.|++|||+||-|=
T Consensus 101 ~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t---~~G~--~~~a~aVVlTTGTFL 158 (621)
T COG0445 101 LYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVT---ADGP--EFHAKAVVLTTGTFL 158 (621)
T ss_pred HHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEe---CCCC--eeecCEEEEeecccc
Confidence 4455666666654 78876 45699999976236999988 5674 689999999999984
No 292
>PRK09898 hypothetical protein; Provisional
Probab=96.24 E-value=0.002 Score=64.30 Aligned_cols=45 Identities=31% Similarity=0.741 Sum_probs=31.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
..+|+.|+.|+.+||..... . +.. ......|+.||.|+++||++.
T Consensus 153 ~~~CigC~~C~~aCP~~ai~----~-------------~~~-------------~~~~~kC~~Cg~Cv~~CP~~A 197 (208)
T PRK09898 153 HKRCIGCSACTTACPWMMAT----V-------------NTE-------------SKKSSKCVLCGECANACPTGA 197 (208)
T ss_pred cccCCCcCcccccCCCCCCE----e-------------cCC-------------CCcCCcCcChHHHHHhCCccc
Confidence 57899999999999974210 0 000 001357999999999999874
No 293
>PRK08244 hypothetical protein; Provisional
Probab=96.24 E-value=0.048 Score=62.50 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+++.|++++.++.++++..++ +.|. +...+ .+| ...++|+.||.|.|..+.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG-DGVE-VVVRG-PDG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-CeEE-EEEEe-CCc-cEEEEeCEEEECCCCChH
Confidence 466777778888899999999999998775 4442 33322 345 346899999999998773
No 294
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.15 E-value=0.018 Score=62.58 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+++.|++++.++.++++..+. +.+...+. +..+|+...|+|+-||-|.|-.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~-~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVR-DGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEE-ETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccc-cccCCceeEEEEeeeecccCcccc
Confidence 3678889999998999999999999998886 66655444 445777778999999999998773
No 295
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=96.14 E-value=0.0015 Score=66.43 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=31.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.++|+.|+.|+.+||....... +. . . . .....|..||.|..+||.+-
T Consensus 147 ~~~C~~C~~C~~~CP~~ai~~~----------------~~---~----~-~----i~~~~C~~Cg~C~~~CP~~A 193 (234)
T TIGR02700 147 RKRCKGCGICVDACPRSAIDMV----------------DG---K----A-F----IRLLKCVGCGKCKEACPYNA 193 (234)
T ss_pred hhHCcCcchHHHhCCcccEEec----------------CC---c----e-E----EchhhCCccchHHhhCCCCc
Confidence 5799999999999996421100 00 0 0 0 12357999999999999763
No 296
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=96.12 E-value=0.0017 Score=72.03 Aligned_cols=47 Identities=34% Similarity=0.702 Sum_probs=32.3
Q ss_pred chhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
+.++|+.|+.|+.+||....... .. . ... ....|..|+.|+.+||.+
T Consensus 8 d~~~Ci~C~~C~~~CP~~ai~~~-----------------~~----~---~~i----~~~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 8 DPEICIRCNTCEETCPIDAITHD-----------------DR----N---YVV----KADVCNGCMACVSPCPTG 54 (411)
T ss_pred CcccCcCccchhhhCCcccEecc-----------------CC----c---eEe----CcccCcCHHHHHhhcCcc
Confidence 47899999999999996422110 00 0 001 124699999999999976
No 297
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.11 E-value=0.0022 Score=62.40 Aligned_cols=58 Identities=31% Similarity=0.499 Sum_probs=40.6
Q ss_pred hchhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCcccccccc------c---cchh
Q psy9575 692 DGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSI------M---NCVD 762 (786)
Q Consensus 692 ~~~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C------g---~C~~ 762 (786)
.+.++||.|+.|+.+||... .++.+ + ....+.|++| | .|++
T Consensus 97 vd~d~CIGC~yCi~ACPyga----~~~~~-----------~---------------~~~~~KCt~C~~ri~~g~~PaCV~ 146 (203)
T COG0437 97 VDKDLCIGCGYCIAACPYGA----PQFNP-----------D---------------KGVVDKCTFCVDRVAVGKLPACVE 146 (203)
T ss_pred ecCCcccCchHHHhhCCCCC----ceeCc-----------c---------------cCcccccCcchhhHhcCCCCcccc
Confidence 34789999999999999752 11111 0 0015779999 8 9999
Q ss_pred hCCCCCChHHHHHHHHH
Q psy9575 763 TCPKGLNPNRSINKIKE 779 (786)
Q Consensus 763 vCP~gi~~~~~i~~lr~ 779 (786)
+||++--.---+.+++.
T Consensus 147 ~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 147 ACPTGALIFGDIDDPKS 163 (203)
T ss_pred cCCcccccccchhhcch
Confidence 99998776555555544
No 298
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=96.10 E-value=0.0092 Score=54.94 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=43.2
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeCCc-------------------------ccccc
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNINGK-------------------------NGLAC 627 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vnG~-------------------------~~laC 627 (786)
.++|++++| +|||++++..+.. ...+.|. .+.||.|-|.|... .+|||
T Consensus 47 ~~~v~~~~G-~sLLeal~~~~~i-----~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~gsRLaC 120 (143)
T PTZ00490 47 HCDVEVPVG-MSLMHALRDVAKL-----DVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKETSRLAC 120 (143)
T ss_pred EEEEEECCC-ccHHHHHHHcCCC-----CccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCCCcEEee
Confidence 467888887 8999999995431 2235687 58999999999431 23788
Q ss_pred cccccccCcceEEC
Q psy9575 628 ITNLNELKQPIIIR 641 (786)
Q Consensus 628 ~t~v~~~~~~~~i~ 641 (786)
...+.+.++.++++
T Consensus 121 Qi~v~~~ldgl~V~ 134 (143)
T PTZ00490 121 QVDLTPEMDGLEVE 134 (143)
T ss_pred eEEEecCCCCEEEE
Confidence 88887655544443
No 299
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.09 E-value=0.0091 Score=73.67 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=31.1
Q ss_pred HHHHHchhccCCCcccccCCCCCcccceEEEeCCccccccc
Q psy9575 588 DALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628 (786)
Q Consensus 588 ~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~ 628 (786)
++++..|+...-+|..+..|..|+||.|.|.+.|..+++|.
T Consensus 198 ~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~~~~~~~~C~ 238 (1006)
T PRK12775 198 ETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTVGGEVKFACV 238 (1006)
T ss_pred HHHHHCCCcEEECChhheeCccceeCCCEeeeCCceEEEeC
Confidence 34444444444578888999999999999999986678994
No 300
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.04 E-value=0.047 Score=61.65 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
+..+...+.+.+++.||+++.++.+.++..+ +++.++.. .++ .+.++.||+|+|.
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~~---~~~---~i~~d~vi~a~G~ 244 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIGE--DKVEGVVT---DKG---EYEADVVIVATGV 244 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC--CcEEEEEe---CCC---EEEcCEEEECcCC
Confidence 3466777788888889999999999998543 55554433 333 4789999999994
No 301
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.97 E-value=0.036 Score=61.39 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCC-ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAK-TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~G-v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+++.+.+ |+++.++.|+.+..++ +.|. +.. +. +|+ .++|+-||-|-|..|.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l-~~-dG~--~~~a~llVgADG~~S~ 163 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTL-SF-DGE--TLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEE-cC-CCc--EEecCEEEECCCCchH
Confidence 468889999998875 9999999999999986 7776 433 22 676 7999999999998773
No 302
>PRK07190 hypothetical protein; Provisional
Probab=95.97 E-value=0.071 Score=60.79 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
.+.+.|.+.+++.|++++.+++++++..++ +.|. +. ..+|+ .++|+.||.|+|+.+
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~---v~-~~~g~--~v~a~~vVgADG~~S 165 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL---TT-LSNGE--RIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE---EE-ECCCc--EEEeCEEEECCCCCH
Confidence 456677778888899999999999998876 4332 21 13454 689999999999876
No 303
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.96 E-value=0.07 Score=61.85 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+. |++++++++++++..++ +.|. +...+ .+|+...++|+.||.|.|..+.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGVT-VTLTD-ADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeEE-EEEEc-CCCCEEEEEEEEEEecCCCchh
Confidence 4667788877775 99999999999998876 4443 33322 3676668999999999998874
No 304
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=95.95 E-value=0.0075 Score=65.45 Aligned_cols=51 Identities=25% Similarity=0.488 Sum_probs=38.7
Q ss_pred EEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe-CCc-------------------ccccccccccc
Q psy9575 576 LVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI-NGK-------------------NGLACITNLNE 633 (786)
Q Consensus 576 ~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v-nG~-------------------~~laC~t~v~~ 633 (786)
.++++++ +|||||+.+.|+. ...+|+.|.||+|.|+| +|. ..|+|.+.+..
T Consensus 13 ~~~~~~g-~tlL~a~~~~gi~------~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~ 83 (339)
T PRK07609 13 QFTAEPD-ETILDAALRQGIH------LPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLS 83 (339)
T ss_pred EEEeCCC-CcHHHHHHHcCCC------CCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEECC
Confidence 3555666 8999999999883 34679999999999986 332 24799988864
No 305
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.90 E-value=0.12 Score=57.39 Aligned_cols=61 Identities=20% Similarity=0.091 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+.|+++++++.++++...+ +..+.+.. . .+|+...++|+.||-|.|..+.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~-~~~~~V~~-~-~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFD-SDRPYVTY-E-KDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecC-CCceEEEE-E-cCCeEEEEEeCEEEECCCCCCc
Confidence 567788888888899999999999987622 33334443 2 3676668999999999997764
No 306
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.89 E-value=0.083 Score=58.45 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCC-ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAK-TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~G-v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+++.| ++++ ++.++++..++ +.+ .+.+ .+|+ .++|+.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~-~~~-~v~~---~~g~--~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDP-DAA-TLTL---ADGQ--VLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecC-CeE-EEEE---CCCC--EEEeeEEEEeCCCCch
Confidence 468889999998887 9998 88899987765 433 2332 3453 5899999999998774
No 307
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.88 E-value=0.0025 Score=65.93 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=32.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCcccccccc---------ccchhhC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSI---------MNCVDTC 764 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C---------g~C~~vC 764 (786)
.++|+.|+.|+.+||..... ..+ .......|++| ..|+++|
T Consensus 161 ~ekCiGCg~Cv~ACPygAi~----~n~--------------------------~~~~~eKC~~C~~Rie~G~~PaCv~aC 210 (321)
T TIGR03478 161 QERCKGYRYCVEACPYKKVY----FNP--------------------------QSQKSEKCIGCYPRIEKGIAPACVKQC 210 (321)
T ss_pred HHHCcchHHHHHhCCCCCcE----ecC--------------------------CCCchhhCCCchhhhccCCCCHHHhhc
Confidence 68999999999999974211 000 00123579999 8999999
Q ss_pred CCCCC
Q psy9575 765 PKGLN 769 (786)
Q Consensus 765 P~gi~ 769 (786)
|.+.-
T Consensus 211 P~~A~ 215 (321)
T TIGR03478 211 PGRIR 215 (321)
T ss_pred CcccE
Confidence 98764
No 308
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.87 E-value=0.0037 Score=34.91 Aligned_cols=16 Identities=44% Similarity=0.924 Sum_probs=13.7
Q ss_pred ccccccccchhhCCCC
Q psy9575 752 FRCRSIMNCVDTCPKG 767 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~g 767 (786)
..|+.|+.|+.+||++
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 4699999999999974
No 309
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=95.85 E-value=0.0028 Score=59.13 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=33.6
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
.+.||.|..|+.+||+-... -+++.+-..+ ..-|+.|+.|+..||++--
T Consensus 114 e~~ciGCtkCiqaCpvdAiv----g~~~~mhtv~-----------------------~dlCTGC~lCva~CPtdci 162 (198)
T COG2878 114 EANCIGCTKCIQACPVDAIV----GATKAMHTVI-----------------------ADLCTGCDLCVAPCPTDCI 162 (198)
T ss_pred chhccccHHHHHhCChhhhh----ccchhHHHHH-----------------------HHHhcCCCcccCCCCCCce
Confidence 68999999999999984211 1122111111 1349999999999999853
No 310
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=95.84 E-value=0.0069 Score=64.25 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=41.2
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCcccccccccc-------------c
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMN-------------C 760 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~-------------C 760 (786)
.++|+.|+.|+.+||..... +..+. ....+..|+.|+. |
T Consensus 142 ~dkCigCg~Cv~aCP~gai~---------------~~~~~-------------~~~~~~KC~~C~~~~~~R~~~G~~PAC 193 (328)
T PRK10882 142 KDVCTGCRYCMVACPFNVPK---------------YDYNN-------------PFGAIHKCELCNQKGVERLDKGGLPGC 193 (328)
T ss_pred HHHcCcccHHHHhCCcccee---------------ccccc-------------cccceeecccccccchhhhhcCCCChh
Confidence 67999999999999964211 00000 0012467999999 9
Q ss_pred hhhCCCCCC----hHHHHHHHHHHHHH
Q psy9575 761 VDTCPKGLN----PNRSINKIKELMIY 783 (786)
Q Consensus 761 ~~vCP~gi~----~~~~i~~lr~~~~~ 783 (786)
+.+||++-- ..+++.++++++.+
T Consensus 194 v~aCP~gAi~fG~~~el~~~a~~ri~~ 220 (328)
T PRK10882 194 VEVCPTGAVIFGTREELLAEAKRRLAL 220 (328)
T ss_pred hhhccccceEeccHHHHHHHHHHHHHh
Confidence 999997543 46677777766544
No 311
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.84 E-value=0.053 Score=60.45 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+.+++.|++++.++.++++..++ +.+. +.. .+|+ .+.|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~---~~g~--~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSG-DDWL-LTL---ADGR--QLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeEE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 3577788888888899999999999998775 4332 222 4563 5899999999998874
No 312
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.83 E-value=0.0093 Score=71.92 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=32.9
Q ss_pred HHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccc
Q psy9575 586 LLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629 (786)
Q Consensus 586 iL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t 629 (786)
+.++++..|+...-+|..+-.|..|+||+|+|.+.|..++.|.-
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~~~~~~~~C~d 239 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTVGGKTKFACVD 239 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEeCCCeEEEECC
Confidence 44555555665455777789999999999999988754578854
No 313
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.82 E-value=0.055 Score=60.20 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+++.|+++++++.++++..++ +.+. +.. .+|+ .+.|+.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~---~~g~--~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRD-EGVT-VTL---SDGS--VLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEEE-EEE---CCCC--EEEeCEEEEcCCCChH
Confidence 5788899999988999999999999998765 4332 322 4554 5889999999997663
No 314
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=95.80 E-value=0.0079 Score=65.03 Aligned_cols=36 Identities=31% Similarity=0.537 Sum_probs=29.3
Q ss_pred EEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 577 VNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 577 v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
++++++ +|||++|.+.|+ ....+||.|+||+|.|+|
T Consensus 260 ~~~~~~-~~lL~~~~~~gi------~~~~~C~~G~Cg~C~~~~ 295 (332)
T PRK10684 260 FYAPVG-TTLLEALESNKV------PVVAACRAGVCGCCKTKV 295 (332)
T ss_pred EEeCCC-ChHHHHHHHcCC------CccCCCCCcCCCCCEEEE
Confidence 334455 899999999887 345789999999999987
No 315
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=95.79 E-value=0.0088 Score=65.27 Aligned_cols=36 Identities=33% Similarity=0.599 Sum_probs=29.7
Q ss_pred EEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 577 VNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 577 v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
++++++ +|||+++.+.|+ ....+||.|+||+|.|.+
T Consensus 277 ~~~~~~-~slL~~~~~~gi------~~~~~C~~G~Cg~C~~~~ 312 (352)
T TIGR02160 277 SSLSRD-ESVLDAALRARP------DLPFACKGGVCGTCRAKV 312 (352)
T ss_pred EecCCC-CcHHHHHHHcCC------CCcCCCCCccCCCCEEEE
Confidence 445566 899999999887 344789999999999987
No 316
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.76 E-value=0.075 Score=60.87 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 121 ~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+-.++...-..-.+++||+++.+.+++.+-.++ ..| ++ ..|. .+.-+.+|||||++..+
T Consensus 56 ~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~-k~V-----~t-~~g~--~~~YDkLilATGS~pfi 115 (793)
T COG1251 56 KTAEDISLNRNDWYEENGITLYTGEKVIQIDRAN-KVV-----TT-DAGR--TVSYDKLIIATGSYPFI 115 (793)
T ss_pred ccHHHHhccchhhHHHcCcEEEcCCeeEEeccCc-ceE-----Ec-cCCc--EeecceeEEecCccccc
Confidence 3444555444455678899999999999998775 322 12 4564 46679999999999854
No 317
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=95.68 E-value=0.0044 Score=66.42 Aligned_cols=42 Identities=29% Similarity=0.557 Sum_probs=29.8
Q ss_pred hhhCcccCccc--CCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC
Q psy9575 694 LYECILCGCCS--TACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK 766 (786)
Q Consensus 694 ~~~CI~Cg~C~--~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 766 (786)
.++|+.|+.|. .+||...... + . .. ....|..||.|+.+||.
T Consensus 301 ~dkCi~Cg~C~~~~aCPt~AI~~-----------------~----~------~I----d~~~Ci~CGaCV~aCP~ 344 (391)
T TIGR03287 301 PERCENCDPCLVEEACPVPAIKK-----------------D----G------TL----NTEDCFGCGYCAEICPG 344 (391)
T ss_pred hhhCcCCCCCcCCcCCCHhhEec-----------------c----c------ee----ChHhCcChHHHHhhCCc
Confidence 67999999995 8999642110 0 0 00 12469999999999996
No 318
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.67 E-value=0.0031 Score=38.74 Aligned_cols=18 Identities=33% Similarity=0.802 Sum_probs=15.4
Q ss_pred cccccccccchhhCCCCC
Q psy9575 751 LFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi 768 (786)
...|+.||.|+.+||.+.
T Consensus 6 ~~~C~~Cg~C~~~Cp~~a 23 (24)
T PF12837_consen 6 PDKCIGCGDCVRVCPEGA 23 (24)
T ss_pred hhhCcChhHHHHhcchhc
Confidence 357999999999999763
No 319
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=95.64 E-value=0.0072 Score=62.97 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=36.2
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCcccccc-ccccchhhCCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCR-SIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-~Cg~C~~vCP~gi~ 769 (786)
.+.|..|+.|+++||+........+.+..=. .+.. .+.+....... .. ....|+ .|+.|..|||.+..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~-sy~t-i~~~~~~~~~~-~~-----~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCI-SYLT-IEKDAALPKEF-AS-----NCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHH-HHhc-ccCCCcCCHHH-HH-----HhcCcccCCCCccccCCCCCC
Confidence 4689999999999998654322223332110 1110 01110011110 00 134575 69999999998764
No 320
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.61 E-value=0.0024 Score=63.73 Aligned_cols=17 Identities=47% Similarity=1.102 Sum_probs=15.4
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.||.|+.+||..
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ 68 (213)
T TIGR00397 52 LAACVRCGLCVEACPYD 68 (213)
T ss_pred cccccchhHHHHhCCcc
Confidence 37999999999999975
No 321
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=95.58 E-value=0.0024 Score=68.81 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=13.9
Q ss_pred ccccccc---------cchhhCCCCCCh
Q psy9575 752 FRCRSIM---------NCVDTCPKGLNP 770 (786)
Q Consensus 752 ~~C~~Cg---------~C~~vCP~gi~~ 770 (786)
..|.+|. .|+++||.++..
T Consensus 241 ~KCd~C~~Rie~G~pPaCVeaCP~~Ar~ 268 (492)
T TIGR01660 241 EKCIFCYPRIEAGQPTVCSETCVGRIRY 268 (492)
T ss_pred ccCCCChhHHhCCCCCcchhhcChhhhh
Confidence 4688885 688888888753
No 322
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.55 E-value=0.0025 Score=39.26 Aligned_cols=17 Identities=47% Similarity=0.934 Sum_probs=14.7
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.||.|+.+||..
T Consensus 5 ~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 5 PDKCIGCGRCVEACPFD 21 (24)
T ss_dssp TTTSSS-THHHHHSTTS
T ss_pred hHHCCCcchhhhhcccc
Confidence 68999999999999974
No 323
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=95.50 E-value=0.015 Score=64.68 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=40.3
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCCC-CcccceEEEe-CCc-------------------ccccccccccc
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE-GVCGSDAMNI-NGK-------------------NGLACITNLNE 633 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~-g~Cg~C~V~v-nG~-------------------~~laC~t~v~~ 633 (786)
.+++++++ +|||||+.+.|+. ...+|+. |.||+|.|.| .|. .+|||.+.+.+
T Consensus 46 ~~~~~~~g-~tLL~a~~~~gi~------i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~ 118 (409)
T PRK05464 46 KTITVPAG-GKLLGALASNGIF------LSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQ 118 (409)
T ss_pred EEEEECCC-chHHHHHHHcCCC------cccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECC
Confidence 35666776 8999999999883 2357995 9999999997 342 24799998865
Q ss_pred c
Q psy9575 634 L 634 (786)
Q Consensus 634 ~ 634 (786)
.
T Consensus 119 d 119 (409)
T PRK05464 119 D 119 (409)
T ss_pred C
Confidence 4
No 324
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.50 E-value=0.0049 Score=66.49 Aligned_cols=45 Identities=29% Similarity=0.631 Sum_probs=32.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
...|++|+.|.. ||.....-+ +. .-....|..||.|+.+||.|.-
T Consensus 560 e~~C~gC~~C~~-Cpf~ais~~------------ka------------------~v~~~~C~gCG~C~~aCp~gai 604 (622)
T COG1148 560 EDKCTGCGICAE-CPFGAISVD------------KA------------------EVNPLRCKGCGICSAACPSGAI 604 (622)
T ss_pred hhhhcCCcceee-CCCCceecc------------cc------------------ccChhhhCcccchhhhCCcccc
Confidence 678999999999 998532211 00 0124579999999999998864
No 325
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.47 E-value=0.14 Score=56.40 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+++.+. +++++.++.++++..++ +.|. +. + .++ .++|+-||.|.|..+.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~-~--~~~---~~~adlvIgADG~~S~ 161 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYSI-IK-F--DDK---QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeEE-EE-E--cCC---EEeeCEEEEeCCCCch
Confidence 46888999998887 49999999999998876 4432 22 2 334 6899999999998774
No 326
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.46 E-value=0.085 Score=59.54 Aligned_cols=63 Identities=13% Similarity=-0.014 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHhcCCce--EEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 122 TGHALLHTLYQRNLHAKTN--FFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~--i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
++.++.+.|...+++.|+. |.++++|+++..++ ++.. +...+ .++......+++||+|||.++
T Consensus 109 ~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~-V~~~~-~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 109 SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWR-VQSKN-SGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEE-EEEEc-CCCceEEEEcCEEEEeccCCC
Confidence 4567888899999888887 88999999998764 4322 22221 122333567899999999765
No 327
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.43 E-value=0.035 Score=64.42 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=39.3
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI 406 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~ 406 (786)
.|.|.||..++ |++||+||+||+++.++ ..+..|+-.|++||.++..|+....
T Consensus 260 ~G~I~vd~~~~---------Ts~p~IyAaGDv~~~~~--------~~v~~A~~~G~~Aa~~i~~~l~~~~ 312 (555)
T TIGR03143 260 RGYIPTNEDME---------TNVPGVYAAGDLRPKEL--------RQVVTAVADGAIAATSAERYVKELK 312 (555)
T ss_pred CCeEEeCCccc---------cCCCCEEEceeccCCCc--------chheeHHhhHHHHHHHHHHHHHhhh
Confidence 35677777776 99999999999973221 1234577779999999999986543
No 328
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.43 E-value=0.084 Score=58.27 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+.+.|.+.+.+. |+++++++.++++..++ +.+. +.. .+|+ .+.|+.||.|.|..+
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~-v~~---~~g~--~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYVR-VTL---DNGQ--QLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeEE-EEE---CCCC--EEEeeEEEEecCCCh
Confidence 46888999999884 99999999999998775 4332 222 4554 589999999999775
No 329
>KOG2853|consensus
Probab=95.40 E-value=0.16 Score=52.80 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEee----------eecCCC-------CEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDL----------ISDSEG-------DILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L----------~~~~~g-------~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
.-.+...+.+++..+|+.+..+ +|+++ ..|+ + ++.||++. +.++....+++.-+|+|+|.
T Consensus 242 pw~LLs~~rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd-~t~~~~~~~i~~vvV~-m~d~~~r~vk~al~V~aAGa 318 (509)
T KOG2853|consen 242 PWALLSGIRRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDD-GTAKLRAQRISGVVVR-MNDALARPVKFALCVNAAGA 318 (509)
T ss_pred HHHHHHHHHHHhhhhcceEecc-eEEEEEEecccceeeeccc-chhhhhhcccceeEEe-cCchhcCceeEEEEEeccCc
Confidence 3567888888888889887643 34444 3343 5 66777663 45665678999999999998
Q ss_pred CCc
Q psy9575 186 GGR 188 (786)
Q Consensus 186 ~~~ 188 (786)
|++
T Consensus 319 ~s~ 321 (509)
T KOG2853|consen 319 WSG 321 (509)
T ss_pred cHH
Confidence 873
No 330
>PRK07538 hypothetical protein; Provisional
Probab=95.38 E-value=0.14 Score=57.16 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhc-CC-ceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLH-AK-TNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~-~G-v~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+.+ .| ++|+.+++++++..++++.++.+ .+..+|+...++||-||-|.|..+.
T Consensus 102 ~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~--~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 102 GELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFL--GDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEE--eccCCCccceEEeeEEEECCCCCHH
Confidence 3577788888766 46 46999999999987653433332 2323455567999999999998774
No 331
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.36 E-value=0.0067 Score=37.39 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.3
Q ss_pred ccccccccchhhCCCCC
Q psy9575 752 FRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~gi 768 (786)
..|+.||.|..+||.+.
T Consensus 6 ~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 6 DKCIGCGRCVEACPFDA 22 (24)
T ss_dssp TTSSS-THHHHHSTTSS
T ss_pred HHCCCcchhhhhccccc
Confidence 57999999999999874
No 332
>PRK09126 hypothetical protein; Provisional
Probab=95.36 E-value=0.19 Score=55.73 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+ .|+++++++.++++..++ +.+ .+.. .+|+ .++|+.||.|+|..+.
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~---~~g~--~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTL---ANGR--RLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEE---cCCC--EEEeCEEEEeCCCCch
Confidence 466777777754 599999999999998764 433 3332 4564 6899999999997664
No 333
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.36 E-value=0.14 Score=56.71 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+...|.+++.+. |++++.++.++++..++ +.+. +.. .+|+ .++|+.||.|+|..+.
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~~-v~~---~~g~--~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGNR-VTL---ESGA--EIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeEE-EEE---CCCC--EEEeeEEEEecCCCch
Confidence 4666787777664 79999999999998875 4332 222 4564 6899999999998774
No 334
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=95.33 E-value=0.0071 Score=70.62 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=30.4
Q ss_pred hhhCcccCcccC--CCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCST--ACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~--~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.|+.|.. +||.... . +. . ... .. .|+.||.|+.+||.+
T Consensus 549 ~~~C~~C~~C~~~~~CP~~~~--~----------------~~-----~---~~i----~~-~C~~Cg~C~~~CP~~ 593 (595)
T TIGR03336 549 QDKCIGCKKCIKELGCPAIEP--E----------------DK-----E---AVI----DP-LCTGCGVCAQICPFD 593 (595)
T ss_pred CCcCCCccccccccCCCCccc--c----------------CC-----c---cee----CC-CCcCHHHHHhhCccc
Confidence 679999999999 9996310 0 00 0 011 12 599999999999986
No 335
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.23 E-value=0.0047 Score=74.60 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=35.0
Q ss_pred chhhCccc----CcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 693 GLYECILC----GCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 693 ~~~~CI~C----g~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+..+|+.| |.|+.+||+......+..| ++ ...+ ... -...|+.||.|..+||.+-
T Consensus 884 ~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g-------~~--------~~~~---~~~---~~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 884 EAARCLECNYVCEKCVDVCPNRANVSIAVPG-------FQ--------NRFQ---IVH---LDAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred cccccCCcccccchhhhhCCcccccccccCC-------cc--------cCCc---eEE---cCccCccccchhhhCCCCC
Confidence 47899999 9999999985311100000 00 0000 000 1367999999999999876
Q ss_pred Ch
Q psy9575 769 NP 770 (786)
Q Consensus 769 ~~ 770 (786)
.|
T Consensus 943 ~p 944 (1019)
T PRK09853 943 KP 944 (1019)
T ss_pred Cc
Confidence 54
No 336
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.22 E-value=0.0038 Score=33.60 Aligned_cols=14 Identities=43% Similarity=1.213 Sum_probs=12.7
Q ss_pred CcccCcccCCCCCc
Q psy9575 697 CILCGCCSTACPSF 710 (786)
Q Consensus 697 CI~Cg~C~~~CP~~ 710 (786)
|+.|+.|+.+||+.
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 89999999999973
No 337
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=95.18 E-value=0.018 Score=62.44 Aligned_cols=38 Identities=34% Similarity=0.592 Sum_probs=30.6
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCCCCcccceEEEe
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNI 619 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~v 619 (786)
..++++++ .|||||+.+.|+ ....+|+.|.||+|.++|
T Consensus 15 ~~~~~~~g-~tlL~a~~~~g~------~~p~~C~~G~Cg~C~~~~ 52 (340)
T PRK11872 15 LFFPVGKD-ELLLDAALRNGI------NLPLDCREGVCGTCQGRC 52 (340)
T ss_pred EEEEeCCC-CcHHHHHHHcCC------CCcCCCCCeECCCCEEEE
Confidence 34555666 899999999887 335679999999999887
No 338
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.17 E-value=0.0083 Score=60.59 Aligned_cols=17 Identities=35% Similarity=0.768 Sum_probs=15.3
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.|+.|+.+||..
T Consensus 124 ~~~C~~C~~C~~aCP~~ 140 (225)
T TIGR03149 124 KDLCVGCQYCIAACPYR 140 (225)
T ss_pred hhhCCcchHHHHhCCCC
Confidence 57999999999999974
No 339
>KOG2852|consensus
Probab=95.15 E-value=0.13 Score=52.23 Aligned_cols=66 Identities=9% Similarity=0.073 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCccCcc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAA 192 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~ 192 (786)
+.+.+.++..+++. ||+++.+. |.++-.+ ++++.++.-.. ..+..+...++.||+|.|-|+..+.+
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~Gk-v~ev~dE-k~r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp 213 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFGK-VKEVSDE-KHRINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLP 213 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEee-eEEeecc-cccccccchhh-hcCceEEeeeeEEEEecCCCchhhcc
Confidence 56788899988886 69998875 6666544 48888765432 23445677789999999999865443
No 340
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.15 E-value=0.025 Score=62.82 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=40.2
Q ss_pred EEEEcCCCChhHHHHHHHchhccCCCcccccCCCC-CcccceEEEeC-Cc-------------------ccccccccccc
Q psy9575 575 FLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE-GVCGSDAMNIN-GK-------------------NGLACITNLNE 633 (786)
Q Consensus 575 ~~v~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~-g~Cg~C~V~vn-G~-------------------~~laC~t~v~~ 633 (786)
.+++++++ +|||+|+.+.|+. ....|+. |.||+|.|.|. |. .+|||.+.+.+
T Consensus 42 ~~~~~~~g-~tlL~a~~~~gi~------i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~ 114 (405)
T TIGR01941 42 KSITVPAG-GKLLNTLASNGIF------ISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQ 114 (405)
T ss_pred eEEEECCC-ChHHHHHHHcCCC------CcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECC
Confidence 45666776 8999999999883 2346996 89999999984 32 25799998865
Q ss_pred c
Q psy9575 634 L 634 (786)
Q Consensus 634 ~ 634 (786)
.
T Consensus 115 d 115 (405)
T TIGR01941 115 D 115 (405)
T ss_pred C
Confidence 4
No 341
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.14 E-value=0.13 Score=57.03 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+++. |++++.++.++++..++ +.+ .+.. .+|+ .++|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~---~~g~--~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTL---ADGE--EIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEE---CCCC--EEEeCEEEEeCCCCch
Confidence 35778888888776 99999999999998765 432 2322 4554 5899999999998874
No 342
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=95.13 E-value=0.0047 Score=57.94 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.8
Q ss_pred hhhCcccCcccCCCCCccc
Q psy9575 694 LYECILCGCCSTACPSFWW 712 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~ 712 (786)
.++||.||+|+-+||....
T Consensus 81 ~ekCiGC~~C~~aCPfGai 99 (165)
T COG1142 81 EEKCIGCKLCVVACPFGAI 99 (165)
T ss_pred hhhccCcchhhhcCCcceE
Confidence 7899999999999997643
No 343
>PRK12831 putative oxidoreductase; Provisional
Probab=95.10 E-value=0.026 Score=63.96 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=37.4
Q ss_pred cCcccCCC-CcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 338 GGIPTNIY-GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 338 GGi~vd~~-~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
|.|.||+. ++ |++||+||+||++ +|. .....|+-.|++||.++.+|+.+
T Consensus 413 G~i~vd~~~~~---------Ts~pgVfAaGD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 413 GCIVADEETGL---------TSKEGVFAGGDAV-TGA--------ATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CcEEECCCCCc---------cCCCCEEEeCCCC-CCc--------hHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666654 44 9999999999998 232 24577888899999999998854
No 344
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=95.08 E-value=0.0066 Score=65.51 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=32.3
Q ss_pred hhhCcccC--cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCG--CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg--~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
...|++|+ .|+.+||.......+--| ... .....|+.|+.|+.+||.+.
T Consensus 180 p~~C~HC~nP~CV~ACPtGAI~k~eedG----------------------iV~----ID~dkCiGCg~CV~ACPygA 230 (492)
T TIGR01660 180 PRLCEHCLNPACVASCPSGAIYKREEDG----------------------IVL----IDQDKCRGWRMCISGCPYKK 230 (492)
T ss_pred CCcCcCCCcccchhhCccCCeEEecCCC----------------------eEE----EehhhccChHHHHHhCCCCC
Confidence 68999998 999999975321000000 000 12357999999999999653
No 345
>PRK13795 hypothetical protein; Provisional
Probab=95.07 E-value=0.0038 Score=72.99 Aligned_cols=49 Identities=24% Similarity=0.550 Sum_probs=31.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
...|+.|+.|+.+||....... +. .. .+ . .....|+.||.|+.+||.+-
T Consensus 580 ~~~C~~Cg~C~~~CP~~ai~~~---~~----------------~~--~~-~----id~~~C~~Cg~C~~aCP~~a 628 (636)
T PRK13795 580 AAECVGCGVCVGACPTGAIRIE---EG----------------KR--KI-S----VDEEKCIHCGKCTEVCPVVK 628 (636)
T ss_pred cccCCCHhHHHHhCCcccEEee---cC----------------Cc--eE-E----echhhcCChhHHHhhcCCCe
Confidence 6799999999999996421100 00 00 00 0 01246999999999999753
No 346
>PRK13984 putative oxidoreductase; Provisional
Probab=95.04 E-value=0.024 Score=66.67 Aligned_cols=48 Identities=27% Similarity=0.228 Sum_probs=39.3
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhh
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLEL 403 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~ 403 (786)
.|+|.||++++ |++||+||+||++ ++ .++..|+-.|+.||.++.+|+.
T Consensus 555 ~G~i~vd~~~~---------Ts~~gVfAaGD~~-~~---------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 555 RGRILTNEYGQ---------TSIPWLFAGGDIV-HG---------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCeEEeCCCCc---------cCCCCEEEecCcC-Cc---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 46688888777 9999999999998 22 2467788889999999999874
No 347
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=95.03 E-value=0.0071 Score=61.72 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=32.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccc---------cchhhC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIM---------NCVDTC 764 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~vC 764 (786)
.++|+.|+.|+.+||.....- +. .......|+.|+ .|+++|
T Consensus 129 ~~~CigC~~Cv~aCP~~Ai~~-----------------~~-------------~~~~~~KC~~C~~r~~~G~~PaCv~~C 178 (244)
T PRK14993 129 NKRCVGCAYCVQACPYDARFI-----------------NH-------------ETQTADKCTFCVHRLEAGLLPACVESC 178 (244)
T ss_pred HHHCCCHHHHHHhcCCCCCEE-----------------eC-------------CCCCcccCcCCcchhhCCCCcccchhc
Confidence 679999999999999742110 00 001235799998 899999
Q ss_pred CCCCC
Q psy9575 765 PKGLN 769 (786)
Q Consensus 765 P~gi~ 769 (786)
|++.-
T Consensus 179 P~~Al 183 (244)
T PRK14993 179 VGGAR 183 (244)
T ss_pred ccCCE
Confidence 98653
No 348
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=95.01 E-value=0.0046 Score=64.05 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=33.8
Q ss_pred chhhCcccC--cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 693 GLYECILCG--CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 693 ~~~~CI~Cg--~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
....|++|+ .|+.+||+......+.-| +.. .....|+.|+.|+.+||.+..
T Consensus 127 ~p~~C~hC~nP~Cv~aCPtgAI~k~eedG----------------------iV~----ID~ekCiGCg~Cv~ACPygAi 179 (321)
T TIGR03478 127 LPRICNHCTNPACLAACPTGAIYKREEDG----------------------IVL----VDQERCKGYRYCVEACPYKKV 179 (321)
T ss_pred ecccCCCCCCccchhhCCcCcEEEecCCC----------------------eEE----ECHHHCcchHHHHHhCCCCCc
Confidence 378999999 999999975321000000 000 123569999999999998764
No 349
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.94 E-value=0.27 Score=54.51 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
..+.+.|.+.+.+. +|++++++.++++..++ +.+. +.. .+|+ .+.|+.||.|+|..+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~---~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGVT-VFD---QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-CceE-EEE---cCCC--EEecCEEEECCCcChHH
Confidence 35778888888776 59999999999998765 4332 222 4554 58999999999998754
No 350
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=94.91 E-value=0.0085 Score=63.56 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=34.4
Q ss_pred hhhCcccC--cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCCh
Q psy9575 694 LYECILCG--CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNP 770 (786)
Q Consensus 694 ~~~CI~Cg--~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~ 770 (786)
...|++|+ .|+.+||.......+..|. + ......|+.|+.|+.+||.++..
T Consensus 109 ~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~---------------------V-----~id~dkCigCg~Cv~aCP~gai~ 161 (328)
T PRK10882 109 KKQCMHCVDPNCVSVCPVSALTKDPKTGI---------------------V-----HYDKDVCTGCRYCMVACPFNVPK 161 (328)
T ss_pred cccCCCcCchhhHhhCCCCCEEecccCCc---------------------c-----cCCHHHcCcccHHHHhCCcccee
Confidence 57999999 9999999853221100000 0 01235799999999999988863
No 351
>PRK11445 putative oxidoreductase; Provisional
Probab=94.86 E-value=0.32 Score=53.03 Aligned_cols=59 Identities=10% Similarity=0.067 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+ +.+.||+++.++.++++..++ +.+ .+... .+|+...++|+.||.|+|..+.
T Consensus 100 ~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~--~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 100 KFDLWLKS-LIPASVEVYHNSLCRKIWRED-DGY-HVIFR--ADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HHHHHHHH-HHhcCCEEEcCCEEEEEEEcC-CEE-EEEEe--cCCcEEEEEeCEEEECCCCCcH
Confidence 34455555 345789999999999998765 432 23332 3565457899999999998874
No 352
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=94.86 E-value=0.03 Score=63.27 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=35.4
Q ss_pred cCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 338 GGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 338 GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
|+|.||+.++ |++||+||+||++ ++ ......|+-.|+.||.++.+|+
T Consensus 403 G~i~vd~~~~---------Ts~~~VfA~GD~~-~g--------~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 403 GTIVVDEDQR---------TSIPGVFAGGDII-LG--------AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CeEEeCCCCc---------cCCCCEEEecCCC-CC--------cHHHHHHHHHHHHHHHHHHhhC
Confidence 5566666555 9999999999998 22 1245678888999999988763
No 353
>KOG1346|consensus
Probab=94.82 E-value=0.01 Score=62.71 Aligned_cols=57 Identities=25% Similarity=0.392 Sum_probs=42.6
Q ss_pred cccCcccCCCCcccccCCCCCcccCceeeecccCC--ccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 336 QMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECAC--VSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 336 t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~--gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
..||+++|...+ .-.++|+|||++| .++-|+-|.- ..-.++|+||+||++++..++.
T Consensus 464 ~lGGfrvnaeL~----------ar~NvwvAGdaacF~D~~LGrRRVe--hhdhavvSGRLAGENMtgAakp 522 (659)
T KOG1346|consen 464 KLGGFRVNAELK----------ARENVWVAGDAACFEDGVLGRRRVE--HHDHAVVSGRLAGENMTGAAKP 522 (659)
T ss_pred ccCcEEeeheee----------cccceeeecchhhhhcccccceecc--ccccceeeceecccccccccCC
Confidence 478888877654 6789999999985 2455665554 3567899999999998876643
No 354
>PRK07045 putative monooxygenase; Reviewed
Probab=94.80 E-value=0.34 Score=53.58 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhc-CCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLH-AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+ .|+++++++.++++..++++.++.+.. .+|+ .+.++-||-|.|..+.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 577788888765 589999999999998876455566654 4564 6889999999998873
No 355
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.80 E-value=0.0077 Score=67.37 Aligned_cols=51 Identities=27% Similarity=0.556 Sum_probs=34.7
Q ss_pred hhchhhCcccCccc--CCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 691 LDGLYECILCGCCS--TACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 691 ~~~~~~CI~Cg~C~--~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
+-+.++|..|+.|. ..||....... + .+. .. ..+.|+.||.|+++||...
T Consensus 573 ~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k~----------------------~i----d~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 573 FVDEEKCTGCGDCIVLSGCPSIEPDPT-F-KKA----------------------RI----DPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred eechhhcCCcHHHHhhcCCceEeecCC-C-Cce----------------------ee----cccccccchhhhhcCchhh
Confidence 33478999999998 58998743221 0 000 01 2356999999999999765
Q ss_pred C
Q psy9575 769 N 769 (786)
Q Consensus 769 ~ 769 (786)
-
T Consensus 625 ~ 625 (640)
T COG4231 625 I 625 (640)
T ss_pred e
Confidence 3
No 356
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=94.79 E-value=0.015 Score=60.37 Aligned_cols=59 Identities=25% Similarity=0.539 Sum_probs=36.9
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccc---------cchhhC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIM---------NCVDTC 764 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg---------~C~~vC 764 (786)
.++|+.|+.|+.+||.....-+ . .......|+.|. +|+.+|
T Consensus 123 ~dkCigC~~Cv~aCP~~a~~~~-----------------~-------------~~~~~~KC~~C~dr~~~G~~PaCv~aC 172 (283)
T TIGR01582 123 HSKCIGCGYCIVGCPFNIPRYD-----------------K-------------VDNRPYKCTLCIDRVSVGQEPACVKTC 172 (283)
T ss_pred HHHCCcchHHHhhCCCCCcEEc-----------------C-------------CCCChhhhcccccccccCCCChHhCcc
Confidence 6789999999999986421000 0 000135688884 899999
Q ss_pred CCCCC----hHHHHHHHHHHHH
Q psy9575 765 PKGLN----PNRSINKIKELMI 782 (786)
Q Consensus 765 P~gi~----~~~~i~~lr~~~~ 782 (786)
|++.- ..+++...++++.
T Consensus 173 P~gAi~fg~~~~~~~~a~~r~~ 194 (283)
T TIGR01582 173 PTNAISFGFKEDMKERAEKRVA 194 (283)
T ss_pred cHhhEEECCHHHHHHHHHHHHH
Confidence 98743 3555555555443
No 357
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=94.76 E-value=0.0074 Score=62.67 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=33.3
Q ss_pred hhhCcccCc--ccCCCCC-cccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCCh
Q psy9575 694 LYECILCGC--CSTACPS-FWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNP 770 (786)
Q Consensus 694 ~~~CI~Cg~--C~~~CP~-~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~ 770 (786)
..+|++|+. |+.+||+ ...... ..|. + . .....|+.|+.|+.+||.++..
T Consensus 90 ~~~C~hC~~p~Cv~aCP~~gA~~~~-~~G~---------------------V-~----id~dkCigC~~Cv~aCP~~a~~ 142 (283)
T TIGR01582 90 KDGCMHCREPGCLKACPAPGAIIQY-QNGI---------------------V-D----FDHSKCIGCGYCIVGCPFNIPR 142 (283)
T ss_pred CccCCCCCCccccCCCCcCCeEEEc-CCCc---------------------E-E----EeHHHCCcchHHHhhCCCCCcE
Confidence 568999998 9999997 211000 0000 0 0 1235699999999999999763
No 358
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.74 E-value=0.0067 Score=62.26 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.8
Q ss_pred ccccccccchhhCCCC
Q psy9575 752 FRCRSIMNCVDTCPKG 767 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~g 767 (786)
..|+.||.|+.+||++
T Consensus 184 d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 184 DACTGCGKCEKACVLE 199 (254)
T ss_pred HHCcCcChhhHhcCCC
Confidence 5699999999999997
No 359
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=94.74 E-value=0.0088 Score=59.73 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=14.8
Q ss_pred ccccccccchhhCCCC
Q psy9575 752 FRCRSIMNCVDTCPKG 767 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~g 767 (786)
..|+.||.|+.+||++
T Consensus 175 ~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 175 AKCTGCGTCEKHCVLS 190 (213)
T ss_pred ccCCCcchhhHhCCCC
Confidence 5799999999999987
No 360
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=94.71 E-value=0.0067 Score=61.29 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=33.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~ 771 (786)
.++|+.|+.|+.+||....... +. . . .. ....|..|+.|..+||.+.-+.
T Consensus 173 ~~~C~~C~~C~~aCP~~ai~~~----------------~~---~----~-~i----~~~~C~~C~~C~~~CP~~~~~~ 222 (228)
T TIGR03294 173 QGLCMGCGTCAAACPTRAIEME----------------DG---R----P-NV----NRDRCIKCGACYVQCPRAFWPE 222 (228)
T ss_pred hhhCcChhHHHHhCCHhhEEEe----------------CC---c----E-EE----ChhhccCHHHHHHHcCCCCcch
Confidence 6899999999999996421100 00 0 0 01 1246999999999999876544
No 361
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.70 E-value=0.0086 Score=58.46 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=15.5
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.|+.|+.+||..
T Consensus 86 ~~~C~~C~~C~~~CP~~ 102 (181)
T PRK10330 86 QERCIGCKTCVVACPYG 102 (181)
T ss_pred hhhCCCcchhhhhCCcc
Confidence 67999999999999975
No 362
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=94.69 E-value=0.0061 Score=52.45 Aligned_cols=18 Identities=44% Similarity=0.910 Sum_probs=14.5
Q ss_pred chhhCcccCcccCCCCCc
Q psy9575 693 GLYECILCGCCSTACPSF 710 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~ 710 (786)
+.++||.|+.|+.+||..
T Consensus 38 d~~~CigC~~C~~aCP~~ 55 (98)
T PF13247_consen 38 DEDKCIGCGYCVEACPYG 55 (98)
T ss_dssp -TTTCCTHHHHHHH-TTS
T ss_pred chhhccCchhhhhhhccC
Confidence 378999999999999975
No 363
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.68 E-value=0.0067 Score=62.25 Aligned_cols=17 Identities=53% Similarity=1.128 Sum_probs=15.3
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
..+|+.||.|+.+||..
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~ 74 (254)
T PRK09476 58 LSACIRCGLCVQACPYD 74 (254)
T ss_pred hhhCcCchHHHHhCCcc
Confidence 37999999999999974
No 364
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.65 E-value=0.05 Score=62.01 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=39.8
Q ss_pred CcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 339 GIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 339 Gi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
|+.++.++.+...+....|++||+||+||++ ++. .....|+..|++||.++.+|+.+.
T Consensus 424 gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 424 GVKKTRRGNISAGYDDYSTSIPGVFAAGDCR-RGQ--------SLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred CcccCCCCCEEecCCCceECCCCEEEeeccC-CCc--------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444555544222222349999999999998 221 235678888999999999998654
No 365
>PRK07118 ferredoxin; Validated
Probab=94.62 E-value=0.0058 Score=63.64 Aligned_cols=17 Identities=41% Similarity=0.970 Sum_probs=15.4
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.|+.|+.+||..
T Consensus 167 ~~~C~~Cg~Cv~aCP~~ 183 (280)
T PRK07118 167 EDKCTGCGACVKACPRN 183 (280)
T ss_pred hhhCcChhHHHHhcCcc
Confidence 57999999999999974
No 366
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=94.58 E-value=0.0085 Score=60.51 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=15.7
Q ss_pred hhhCcccCc--ccCCCCCcc
Q psy9575 694 LYECILCGC--CSTACPSFW 711 (786)
Q Consensus 694 ~~~CI~Cg~--C~~~CP~~~ 711 (786)
...|++|+. |+.+||+..
T Consensus 91 ~~~C~~C~~~~Cv~~CP~gA 110 (225)
T TIGR03149 91 RKSCQHCDNAPCVAVCPTGA 110 (225)
T ss_pred chhccCCcCcChHhhCCCCc
Confidence 679999996 999999864
No 367
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=94.56 E-value=0.36 Score=56.11 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+...|.+.+.+. ++++++++.++++..++ +.+. +...+ .+| ...++|+.||.|+|..+.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~-v~~~~-~~g-~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVT-LTVET-PDG-PYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEE-EEEEC-CCC-cEEEEeCEEEECCCCCcH
Confidence 4667788888775 79999999999998775 4332 22222 334 246899999999998874
No 368
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=94.55 E-value=0.0077 Score=73.12 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.8
Q ss_pred cccccccchhhCCCCCC
Q psy9575 753 RCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 753 ~C~~Cg~C~~vCP~gi~ 769 (786)
.|+.||.|+.+||.+--
T Consensus 922 ~C~~CG~C~~vCP~~a~ 938 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGA 938 (1012)
T ss_pred cccccchHHHhCCCCcc
Confidence 59999999999998643
No 369
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.54 E-value=0.31 Score=53.85 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+.+. ++. ++++.++++..++ +.+. +.. .+|+ .++|+.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~-~~~~-v~~---~~g~--~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 111 WLLNRALEARVAELPNIT-RFGDEAESVRPRE-DEVT-VTL---ADGT--TLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHHHhcCCCcE-EECCeeEEEEEcC-CeEE-EEE---CCCC--EEEEeEEEEecCCCch
Confidence 46788888888876 466 7799999998775 4443 222 4554 5899999999998763
No 370
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.52 E-value=0.42 Score=52.96 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+.+.+.|+.+++++.++.+...+ +.-.++... .+|+...++|+-||-|.|..+.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~-~~~~~V~~~--~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLA-GDRPYVTFE--RDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecC-CCccEEEEE--ECCeEEEEEeCEEEECCCCchh
Confidence 3567788888888899999999888876533 323344442 2566567999999999998774
No 371
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=94.49 E-value=0.0074 Score=62.10 Aligned_cols=47 Identities=30% Similarity=0.572 Sum_probs=32.5
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi 768 (786)
.+.|..||+|+.+||+....-. + .. +.. ....|+.||.|..+||..+
T Consensus 171 ~E~c~gc~~cv~~C~~gAI~~~---~-------~~-------------l~i-----d~~~Ci~Cg~Ci~~Cp~~~ 217 (317)
T COG2221 171 EELCRGCGKCVKVCPTGAITWD---G-------KK-------------LKI-----DGSKCIGCGKCIRACPKAA 217 (317)
T ss_pred HHHhchhHhHHHhCCCCceeec---c-------ce-------------EEE-----ehhhccCccHHhhhCChhh
Confidence 6899999999999998632210 0 00 000 2367999999999999433
No 372
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.48 E-value=0.11 Score=57.00 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=44.9
Q ss_pred ccccccCcccCCCC---cccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy9575 333 IHYQMGGIPTNIYG---QVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI 406 (786)
Q Consensus 333 ~~~t~GGi~vd~~~---~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~ 406 (786)
+.++.+|+.+-.+. --+..++++...+||||+||+.+ |+.| ..||+.+|.+||.+|+..+.+..
T Consensus 301 a~~~r~G~~~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~--g~~G--------y~ea~a~G~~Ag~n~~~~~~g~~ 367 (436)
T PRK05335 301 AEFVRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQIT--GVEG--------YVESAASGLLAGINAARLALGKE 367 (436)
T ss_pred eEEEeceEEeeccccCChhhCchhccccCCCCEEeeeeec--CchH--------HHHHHHHHHHHHHHHHHHhcCCC
Confidence 45667777442221 00122345557899999999998 6654 34999999999999999997764
No 373
>KOG1336|consensus
Probab=94.46 E-value=0.037 Score=60.24 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=45.1
Q ss_pred CCCCCCCCeeeeecccccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccCh-hhhHHHHHHHHHHHHH
Q psy9575 319 NVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGT-NSLLDLLVFGRSAGNH 397 (786)
Q Consensus 319 g~d~~~~~i~v~p~~~~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg-~~l~~a~v~G~~Ag~~ 397 (786)
|+-|.....+. ....-..|||+||+.+| |++||+||+||++..-+++.+.... --...|..+|+-|+.+
T Consensus 310 G~~p~t~~~~~-g~~~~~~G~i~V~~~f~---------t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~a 379 (478)
T KOG1336|consen 310 GIKPNTSFLEK-GILLDSKGGIKVDEFFQ---------TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKA 379 (478)
T ss_pred ccccccccccc-cceecccCCEeehhcee---------eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhh
Confidence 44454444444 22334689999999998 9999999999999666776554433 3344555555555444
No 374
>PRK10194 ferredoxin-type protein; Provisional
Probab=94.45 E-value=0.0077 Score=57.68 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=15.1
Q ss_pred ccccccccchhhCCCCC
Q psy9575 752 FRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~gi 768 (786)
..|+.||.|+++||++.
T Consensus 138 ~~C~gCg~C~~~CP~~A 154 (163)
T PRK10194 138 QLCNGCGACAASCPVSA 154 (163)
T ss_pred ccCcCcchhhhhCCccc
Confidence 57999999999999764
No 375
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=94.43 E-value=0.035 Score=60.09 Aligned_cols=56 Identities=27% Similarity=0.442 Sum_probs=39.5
Q ss_pred CCCChhHHHHHHHchhccCCCcccccCCC-CCcccceEEEeC-Cc-----------------ccccccccccccCcceEE
Q psy9575 580 SSNDKMLLDALHRIKYDIDDSLTLRRSCR-EGVCGSDAMNIN-GK-----------------NGLACITNLNELKQPIII 640 (786)
Q Consensus 580 ~~~~~tiL~al~~~~~~~~~~l~~~~~Cr-~g~Cg~C~V~vn-G~-----------------~~laC~t~v~~~~~~~~i 640 (786)
+++ +|||+|++++|.. +. ..|. .|.||-|.|.|. |. ..|||++.|. |.-++.|
T Consensus 15 ~~g-~~il~aar~~gv~-i~-----s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~-gd~~i~i 86 (614)
T COG3894 15 DEG-TTILDAARRLGVY-IR-----SVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL-GDLVIFI 86 (614)
T ss_pred CCC-chHHHHHHhhCce-Ee-----eecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc-CceEEEc
Confidence 345 8999999999983 33 4466 489999988773 32 3579999997 5444444
Q ss_pred CCC
Q psy9575 641 RPL 643 (786)
Q Consensus 641 ~p~ 643 (786)
-|-
T Consensus 87 p~e 89 (614)
T COG3894 87 PPE 89 (614)
T ss_pred Cch
Confidence 444
No 376
>PRK08013 oxidoreductase; Provisional
Probab=94.43 E-value=0.3 Score=54.26 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+...|.+.+.+. ||++++++.++++..++ +.|. +.. .+|+ .++|+-||-|.|..+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~---~~g~--~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEAF-LTL---KDGS--MLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeEE-EEE---cCCC--EEEeeEEEEeCCCCcH
Confidence 5778888888885 89999999999998765 4332 222 4564 5899999999998774
No 377
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.41 E-value=0.17 Score=47.98 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=27.6
Q ss_pred CCceEE-eceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 137 AKTNFF-IEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 137 ~Gv~i~-~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
.|++|. .+.+|++|...+ +.. -+.. .+|. .+.++.||||||-
T Consensus 113 ~~i~v~~~~~~V~~i~~~~-~~~-~v~~---~~g~--~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDD-DGY-RVVT---ADGQ--SIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcC-CcE-EEEE---CCCC--EEEeCEEEECCCC
Confidence 365543 356899998876 332 2222 5564 5799999999994
No 378
>PRK07588 hypothetical protein; Provisional
Probab=94.36 E-value=0.32 Score=53.91 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+...|.+.+. .|+++++++.++++..++ +.|. +.. .+|+ .+.++.||-|.|-.+..
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~-~~v~-v~~---~~g~--~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHR-DGVR-VTF---ERGT--PRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECC-CeEE-EEE---CCCC--EEEeCEEEECCCCCccc
Confidence 46667766553 489999999999998775 5443 222 4565 46899999999987743
No 379
>PRK10262 thioredoxin reductase; Provisional
Probab=94.31 E-value=0.034 Score=59.80 Aligned_cols=57 Identities=14% Similarity=-0.030 Sum_probs=36.7
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|+|.||...+ + ....|++||+||+||+++.+. ....-|+-.|.+|+.+|.+++...
T Consensus 261 ~g~i~vd~~~~--~--~~~~t~~~~VyA~GD~~~~~~--------~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 261 NGYIKVQSGIH--G--NATQTSIPGVFAAGDVMDHIY--------RQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred CCEEEECCCCc--c--cccccCCCCEEECeeccCCCc--------ceEEEEehhHHHHHHHHHHHHHhc
Confidence 46677876210 0 012399999999999982111 112224445999999999998664
No 380
>KOG2960|consensus
Probab=94.29 E-value=0.1 Score=50.31 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=34.2
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
..+||.|.+|--. .-+.|+||+|- .++.-+.+|..||+.|.+..
T Consensus 274 evvpgMiv~GMEv-aE~DGanRMGP-TFGaMm~SG~kAaq~aLk~f 317 (328)
T KOG2960|consen 274 EVVPGMIVAGMEV-AELDGANRMGP-TFGAMMLSGVKAAQQALKHF 317 (328)
T ss_pred hccCceEEeeeee-eeccCCcccCc-chhhhhhcchhHHHHHHHHh
Confidence 5699999999655 38899999874 35566777888888887765
No 381
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.13 E-value=0.017 Score=34.27 Aligned_cols=16 Identities=38% Similarity=0.710 Sum_probs=14.3
Q ss_pred cccccccccchhhCCC
Q psy9575 751 LFRCRSIMNCVDTCPK 766 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~ 766 (786)
...|+.|+.|+.+||+
T Consensus 7 ~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 7 LERCIGCGACEVACPV 22 (22)
T ss_pred cccccCchhHHHhhCc
Confidence 4689999999999995
No 382
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.12 E-value=0.014 Score=63.17 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=34.0
Q ss_pred hhCcccCcccCCCCCcccCC-CCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 695 YECILCGCCSTACPSFWWNS-DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 695 ~~CI~Cg~C~~~CP~~~~~~-~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
++|..||+|+.+||.-..+. +.-+|-+ ++. ..+ .... ...........|+.||.|..+||.+
T Consensus 224 d~CtgCg~C~~vCPve~~nefn~Gl~~~---kAi---y~p---~~qa--Vp~~~~Id~~~c~~c~~C~~ac~~~ 286 (622)
T COG1148 224 DKCTGCGACSEVCPVEVPNEFNEGLGKR---KAI---YIP---FPQA--VPLNYNIDPKHCIECGLCEKACPNE 286 (622)
T ss_pred ccccccccccccCCcccCcccccccccc---eee---ecc---chhh--cccccccChhhhccchhhhhcCCcc
Confidence 79999999999999853211 1111110 000 000 0000 0011122457899999999999943
No 383
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=94.11 E-value=0.017 Score=61.19 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=20.2
Q ss_pred ccccchhhCCCCCChHHHHHHHHHHH
Q psy9575 756 SIMNCVDTCPKGLNPNRSINKIKELM 781 (786)
Q Consensus 756 ~Cg~C~~vCP~gi~~~~~i~~lr~~~ 781 (786)
.||.|..+||.+.+....|+.+=+..
T Consensus 268 ~C~~C~~~CPf~~~~~s~iH~vvk~t 293 (314)
T TIGR02486 268 GCGVCQAVCPFNKKPNSWIHDVVRST 293 (314)
T ss_pred CCCCCeeECCCCCCCcchHHHHHHHH
Confidence 59999999999987777776654433
No 384
>PRK07236 hypothetical protein; Provisional
Probab=93.97 E-value=0.62 Score=51.47 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+.+.|.+.+ .++++++++.++++..++ +.|. +.. .+|+ .++|+.||.|.|..+..
T Consensus 101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~-v~~---~~g~--~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 101 VLYRALRAAF--PAERYHLGETLVGFEQDG-DRVT-ARF---ADGR--RETADLLVGADGGRSTV 156 (386)
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEecC-CeEE-EEE---CCCC--EEEeCEEEECCCCCchH
Confidence 3444554433 357899999999998775 4443 322 4564 58999999999987753
No 385
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=93.95 E-value=0.14 Score=58.49 Aligned_cols=52 Identities=12% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCceEEeceEEEeeeecCC--CCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 137 AKTNFFIEWMAIDLISDSE--GDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 137 ~Gv~i~~~~~v~~L~~~~~--g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
-+++++.++.|++|+.+++ ++|.|+...+..+|+...++||.||||+|+...
T Consensus 227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 3699999999999998753 479999999865788888999999999999864
No 386
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=93.93 E-value=0.065 Score=64.72 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.0
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
|++||+||+||++. | ......|+-.|++||.++.+++.+
T Consensus 713 Ts~~gVfA~GD~~~-g--------~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 713 SSIPGIYAGGDIVR-G--------GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCCEEEeCCccC-C--------cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999982 2 234678888899999999998743
No 387
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.90 E-value=0.072 Score=60.37 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=37.9
Q ss_pred ccCcccCC-CCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 337 MGGIPTNI-YGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 337 ~GGi~vd~-~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|+|.||. ..+ |++||+||+||++ ++. .....|+..|++||.++..++.+.
T Consensus 403 ~g~i~vd~~~~~---------Ts~~~VfA~GD~~-~~~--------~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 403 WGTIIADDETGR---------TSLPGVFAGGDIV-TGA--------ATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CCCEEeCCCCCc---------cCCCCEEEeCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566665 444 9999999999998 221 245678888999999999988653
No 388
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.84 E-value=0.4 Score=53.07 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+. |++++++++++++..++ +.+. +.. .+|. .+.|+.||.|+|..+.
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~~-v~~---~~g~--~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSVR-VTL---DDGE--TLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeEE-EEE---CCCC--EEEeCEEEEecCCChh
Confidence 4566777777664 89999999999998765 4432 332 3453 5799999999998764
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.82 E-value=0.011 Score=69.98 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.6
Q ss_pred chhhCcccCcccCCCCCcc
Q psy9575 693 GLYECILCGCCSTACPSFW 711 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~~ 711 (786)
+.++|+.|++|+.+|+...
T Consensus 8 d~~~C~gC~~C~~aC~~~~ 26 (654)
T PRK12769 8 NSQQCLGCHACEIACVMAH 26 (654)
T ss_pred ChHhCcChhHHHHHhhhhh
Confidence 4899999999999998753
No 390
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=93.71 E-value=0.028 Score=53.69 Aligned_cols=17 Identities=41% Similarity=0.770 Sum_probs=14.4
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.|+.|+.+||..
T Consensus 94 ~~~C~~C~~C~~aCP~~ 110 (161)
T TIGR02951 94 QDKCIGCRYCVWACPYG 110 (161)
T ss_pred HHhCCCchHHHhhCCCC
Confidence 57899999999999863
No 391
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=93.69 E-value=0.0064 Score=59.38 Aligned_cols=18 Identities=33% Similarity=0.728 Sum_probs=16.1
Q ss_pred chhhCcccCcccCCCCCc
Q psy9575 693 GLYECILCGCCSTACPSF 710 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~ 710 (786)
+.++|+.|+.|+.+||..
T Consensus 8 d~~~C~gC~~C~~aC~~~ 25 (181)
T PRK10330 8 DASKCIGCRTCEVACVVS 25 (181)
T ss_pred CcccCcCccHHHHHHHHH
Confidence 478999999999999964
No 392
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.68 E-value=0.062 Score=68.16 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=48.8
Q ss_pred EEcCCCChhHHHHHHH-chhccCCCcccccCCCCCcccceEEEeC----------Ccccccccccccc--cCcceEECCC
Q psy9575 577 VNLSSNDKMLLDALHR-IKYDIDDSLTLRRSCREGVCGSDAMNIN----------GKNGLACITNLNE--LKQPIIIRPL 643 (786)
Q Consensus 577 v~~~~~~~tiL~al~~-~~~~~~~~l~~~~~Cr~g~Cg~C~V~vn----------G~~~laC~t~v~~--~~~~~~i~p~ 643 (786)
++++++ +|+|+.|+. .+. -....+|..|.||+|.|.|+ |+++.||.+++.. |.++.|+|-+
T Consensus 15 ~~~~~~-~~ll~~LR~~~~l-----~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~TvEgl 88 (1330)
T TIGR02969 15 KNVDPE-TMLLPYLRKKLRL-----TGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTVEGI 88 (1330)
T ss_pred ccCCCC-CcHHHHHHhhcCC-----CCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEecCCc
Confidence 356666 899999997 232 24467899999999999998 4677799999964 4678889988
Q ss_pred C
Q psy9575 644 P 644 (786)
Q Consensus 644 ~ 644 (786)
.
T Consensus 89 ~ 89 (1330)
T TIGR02969 89 G 89 (1330)
T ss_pred C
Confidence 4
No 393
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.67 E-value=0.066 Score=56.71 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
+..+...+.+.+++.|++++. +.++.+..++ +.+ -+.. .+++ .++++.||+|||...
T Consensus 56 ~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~-~v~~---~~~~--~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 56 GPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD-RPF-KVKT---GDGK--EYTAKAVIIATGASA 112 (300)
T ss_pred hHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC-Cee-EEEe---CCCC--EEEeCEEEECCCCCc
Confidence 346777788888888999988 8888887664 322 1222 3443 589999999999865
No 394
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.65 E-value=0.092 Score=59.72 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=32.2
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
|++||+||+||++. +. .....|+-.|++||.++.+++.+.
T Consensus 428 Ts~~gVfa~GD~~~-g~--------~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 428 TSNPKVFAAGDMRR-GQ--------SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCCEEEccccCC-Cc--------hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999982 21 235678888999999999998653
No 395
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.64 E-value=0.43 Score=55.46 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
+..+.+.+.+.+++.|++++ ++.++.+..++ .+..+.. .++ .+.++.||||||....
T Consensus 59 ~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~---~~g---~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 59 GPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKT---ARG---DYKTLAVLIATGASPR 115 (555)
T ss_pred HHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEe---cCC---EEEEeEEEECCCCccC
Confidence 44677777777888899985 66788776553 3322322 344 3788999999998653
No 396
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.63 E-value=0.24 Score=56.71 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+.++|.+.++++|++|+++++|.++..++ +++.|+.+ .+|+ .+.|+.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~---~~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKL---ADGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEe---CCCC--EEEcCEEEECCChHH
Confidence 5788999999999999999999999999886 88888876 4564 578999999999764
No 397
>PRK07118 ferredoxin; Validated
Probab=93.55 E-value=0.016 Score=60.48 Aligned_cols=48 Identities=31% Similarity=0.625 Sum_probs=33.1
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
...|+.|+.|+.+||........ . +... ....|+.||.|..+||++.-
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~~~~----------------~--------~~vI----d~~~C~~Cg~C~~~CP~~AI 259 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAITMEN----------------N--------LAVI----DQEKCTSCGKCVEKCPTKAI 259 (280)
T ss_pred ccccccchHHHhhCCcCcEEEeC----------------C--------cEEE----cCCcCCCHHHHHHhCCcccc
Confidence 56899999999999974221100 0 0011 23679999999999998754
No 398
>PLN00192 aldehyde oxidase
Probab=93.53 E-value=0.082 Score=67.17 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred eEEE-EcCCCChhHHHHHHHc-hhccCCCcccccCCCCCcccceEEEe----------CCcccccccccccc--cCcceE
Q psy9575 574 KFLV-NLSSNDKMLLDALHRI-KYDIDDSLTLRRSCREGVCGSDAMNI----------NGKNGLACITNLNE--LKQPII 639 (786)
Q Consensus 574 ~~~v-~~~~~~~tiL~al~~~-~~~~~~~l~~~~~Cr~g~Cg~C~V~v----------nG~~~laC~t~v~~--~~~~~~ 639 (786)
.+++ ++++. +|+|+.|+.- +. -....+|..|.||.|.|.| +|+++.||.+++.. |.++.|
T Consensus 14 ~~~~~~~~p~-~~Ll~~LR~~~~l-----tgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 87 (1344)
T PLN00192 14 RFELSSVDPS-TTLLEFLRTQTPF-----KSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSITT 87 (1344)
T ss_pred EEEeccCCCC-CcHHHHHHHhhCC-----CCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEEe
Confidence 4456 46666 8999999972 22 2345789999999999999 57788899999964 467889
Q ss_pred ECCCCC----CCceeeeeecchHhHHhc
Q psy9575 640 IRPLPG----LPVIRDLVVDMTLFFKQF 663 (786)
Q Consensus 640 i~p~~~----~~~~~dL~~d~~~~~~~~ 663 (786)
+|-+.+ +..++.-.++.+..-|-+
T Consensus 88 vEgl~~~~~~lhpvq~a~~~~~~~QCGf 115 (1344)
T PLN00192 88 SEGLGNSKDGFHPIHKRFAGFHASQCGF 115 (1344)
T ss_pred ecCcCCCCCCCCHHHHHHHHcCCCccCC
Confidence 999853 122444444554444433
No 399
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=93.43 E-value=0.27 Score=52.07 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=44.3
Q ss_pred HHHHHHhcC-CceEEeceEEEeeeec-CCCCEEEEEEEEcCCC-cEEEEEeCeEEEcCCCCC
Q psy9575 129 TLYQRNLHA-KTNFFIEWMAIDLISD-SEGDILGVVALEMETG-NIMILESKITILATGGGG 187 (786)
Q Consensus 129 ~L~~~~~~~-Gv~i~~~~~v~~L~~~-~~g~v~G~~~~~~~~g-~~~~i~AkaVVlATGG~~ 187 (786)
.++..+.+. |++|+.++.|++|+.+ ++++++||...+.... ....+.||.||||+|.+.
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 334444454 9999999999999875 2389999999884433 256788899999999765
No 400
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=93.34 E-value=0.25 Score=56.64 Aligned_cols=63 Identities=10% Similarity=0.014 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGG 186 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~ 186 (786)
...+.++|.+.+++.|++|+.+++|.+|+.++ +++.|++..+..+|+...+.|+.||+++--.
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 46789999999999999999999999999986 8888887754222333468999999998853
No 401
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.31 E-value=0.022 Score=59.02 Aligned_cols=47 Identities=23% Similarity=0.447 Sum_probs=31.0
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
..+|+.|+.|+.+||.....-+ .. .... .....|+.|+.|..+||.+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~d-----------------~~------~~~v----~~~~~C~~C~~C~~~Cp~~ 214 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLELE-----------------EG------KVVV----EDLEDCSLCKLCERACDAG 214 (259)
T ss_pred hhhCCChHHHHHhCCccceEcc-----------------CC------eeEE----eChhhCcCchHHHHhCCCC
Confidence 3689999999999997532100 00 0000 0124799999999999953
No 402
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.27 E-value=0.023 Score=66.25 Aligned_cols=16 Identities=38% Similarity=0.914 Sum_probs=14.6
Q ss_pred ccccccccchhhCCCC
Q psy9575 752 FRCRSIMNCVDTCPKG 767 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~g 767 (786)
..|+.||.|..+||.+
T Consensus 541 ~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 541 DKCTGCHICADVCPCG 556 (564)
T ss_pred ccCcChhHHHhhcCcC
Confidence 5799999999999975
No 403
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=93.14 E-value=0.9 Score=50.57 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+...|.+++.+. ||+++.++.++++..++ +.+ .+.. .+|+ .++|+.||.|.|..+.
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~~-~v~~---~~g~--~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SEA-WLTL---DNGQ--ALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-CeE-EEEE---CCCC--EEEeCEEEEeCCCCCh
Confidence 4667888888775 89999999999998765 432 2332 4564 5899999999997763
No 404
>PRK09898 hypothetical protein; Provisional
Probab=93.09 E-value=0.023 Score=56.72 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=33.3
Q ss_pred hhhCcccC--cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCG--CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg--~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
...|++|+ .|+.+||....... +. . . .+ .. ....|+.|+.|+.+||.+..
T Consensus 120 ~~~C~~C~~~~C~~~CP~gAi~~~----~~-------------~-g---~v-~v----d~~~CigC~~C~~aCP~~ai 171 (208)
T PRK09898 120 ADTCRQCKEPQCMNVCPIGAITWQ----QK-------------E-G---CI-TV----DHKRCIGCSACTTACPWMMA 171 (208)
T ss_pred CccCCCccCcchhhhCCcceEEee----cc-------------C-C---eE-Ee----ccccCCCcCcccccCCCCCC
Confidence 57999998 99999997532110 00 0 0 00 11 23569999999999999864
No 405
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.03 E-value=0.31 Score=55.19 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
..+.+.|.+.+++.|++|..+++|++|..+++++|+|+.+.+...++...+.|++||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 56788999999888999999999999986554789898875422222235899999999964
No 406
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=92.96 E-value=0.015 Score=60.43 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=30.8
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
.++|+.|+.|..+||.....- +.. .. ... ....|+.|+.|..+||.+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~-----------------~~~------~~-~v~---~~~~C~~C~~Ci~~CP~~ 214 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLEL-----------------KEG------KL-VVT---DLLNCSLCKLCERACPGK 214 (263)
T ss_pred cccCCchHHHHHhCCccccEe-----------------cCC------eE-EEe---ChhhCCCchHHHHhCCCC
Confidence 479999999999999742110 000 00 000 124699999999999963
No 407
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.95 E-value=0.087 Score=59.47 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=33.9
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.|+|.||+++| |++||+||+||++ ++. .+...++.+ |++|+++++.
T Consensus 271 ~G~i~vd~~~~---------Ts~~~IyA~GD~~-~~~----~~~~~a~~~----~~~~~~~~~g 316 (441)
T PRK08010 271 RGAIVVDKYLH---------TTADNIWAMGDVT-GGL----QFTYISLDD----YRIVRDELLG 316 (441)
T ss_pred CCcEEECCCcc---------cCCCCEEEeeecC-CCc----cchhHHHHH----HHHHHHHHcC
Confidence 46788888887 9999999999998 332 244444444 8888888753
No 408
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.78 E-value=0.097 Score=57.73 Aligned_cols=50 Identities=26% Similarity=0.451 Sum_probs=35.9
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
.+||.||++++ |++||+||+|||+ .+.|. .++ .+..++..|++||++++.
T Consensus 252 ~~gi~vd~~l~---------ts~~~VyA~GD~a--~~~~~-~~~--~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 252 NRGIVVDSYLQ---------TSAPDIYALGDCA--EINGQ-VLP--FLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCCEEECCCcc---------cCCCCEEEeeecE--eECCc-eee--hHHHHHHHHHHHHHHhcC
Confidence 35789998887 9999999999998 33332 122 245567778888888764
No 409
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=92.73 E-value=0.099 Score=58.06 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=33.3
Q ss_pred hcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 135 LHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 135 ~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
++.||+++.++.|+.+..++ ..| .. .+|+ .+.++.+|||||+....
T Consensus 69 ~~~~i~~~~g~~V~~id~~~-~~v---~~---~~g~--~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRDT-REL---VL---TNGE--SWHWDQLFIATGAAARP 114 (396)
T ss_pred HHCCCEEEcCCEEEEEECCC-CEE---EE---CCCC--EEEcCEEEEccCCCCCC
Confidence 35699999998888886653 322 12 3554 58899999999998743
No 410
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.70 E-value=0.16 Score=62.40 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=33.1
Q ss_pred CcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 356 NKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 356 ~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
.|++||+||+||++. |.....+|+-.|+.||.++..|+.-
T Consensus 589 ~Ts~pgVFAaGD~~~---------G~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 589 RTSIKGVYSGGDAAR---------GGSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred ccCCCCEEEEEcCCC---------ChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 499999999999982 2345678888899999999998854
No 411
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.68 E-value=0.14 Score=55.81 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=35.9
Q ss_pred cCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 338 GGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 338 GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
|+|.||+..+ |++||+||+||++ ++. ..+..|+..|+.|+.++.+++
T Consensus 303 g~i~vd~~~~---------t~~~~vyaiGD~~-~~~--------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 303 GEIVVDEKHM---------TSREGVFAAGDVV-TGP--------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CcEeeCCCcc---------cCCCCEEEEcccc-cCc--------chHHHHHHHHHHHHHHHHHHH
Confidence 4566776665 8999999999998 222 135567777999999998877
No 412
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.66 E-value=0.08 Score=62.61 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.4
Q ss_pred ccccccc---cchhhCCCCCChHHHHHHHHH
Q psy9575 752 FRCRSIM---NCVDTCPKGLNPNRSINKIKE 779 (786)
Q Consensus 752 ~~C~~Cg---~C~~vCP~gi~~~~~i~~lr~ 779 (786)
.+|..|| .|...||.++++.+.|..+++
T Consensus 208 ~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~ 238 (639)
T PRK12809 208 DRCVYCAEKANCNWHCPLHNAIPDYIRLVQE 238 (639)
T ss_pred HHHhCCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 5799999 799999999999999988764
No 413
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=92.64 E-value=0.018 Score=58.77 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=32.8
Q ss_pred hhhCcccCc--ccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCGC--CSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg~--C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
...|++|+. |+.+||....... + ++ ...+ ....|+.|+.|+.+||.+..
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~----~-----------~G--------~v~i----d~~~CigC~~Cv~aCP~~Ai 147 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQR----E-----------DG--------IVVV----DNKRCVGCAYCVQACPYDAR 147 (244)
T ss_pred chhcCCcCCccCccccCCCCEEEC----C-----------CC--------CEEE----cHHHCCCHHHHHHhcCCCCC
Confidence 579999996 9999997421100 0 00 0001 23569999999999998865
No 414
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=92.56 E-value=0.055 Score=59.80 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=18.2
Q ss_pred cccccccccchhhCCCCCChH
Q psy9575 751 LFRCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi~~~ 771 (786)
...|+.|+.|+.+||++|++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~ 250 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIR 250 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeC
Confidence 468999999999999998643
No 415
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=92.51 E-value=0.2 Score=59.27 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=32.6
Q ss_pred CcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 356 NKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 356 ~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|++||+||+||++ ++. .....|+-.|++||.++..++.+.
T Consensus 463 ~Ts~pgVfA~GDv~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 463 QTSVAGVFAGGDCV-TGA--------DIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred cCCCCCEEEcCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 39999999999998 222 235677888999999999998653
No 416
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.33 E-value=0.42 Score=52.41 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
..+++.|.+.+.+. |++++++++|++|.+.++|+ .-+.+.+..+|+...++|+.|++.+||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 36788999988887 99999999999999987453 33555666788888999999999999987
No 417
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.27 E-value=1.6 Score=48.48 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 124 HALLHTLYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 124 ~~i~~~L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
..+.+.|.+.+.+. |+++++++.++++..++ +.|. +...+..++ ..+.|+-||-|.|..+..
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~-v~~~~~~~~--~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSIT-ATIIRTNSV--ETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-CceE-EEEEeCCCC--cEEecCEEEECCCccHhH
Confidence 36788888888764 89999999999998764 4432 223222223 357899999999988743
No 418
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.22 E-value=0.21 Score=61.98 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.6
Q ss_pred CCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhcc
Q psy9575 355 NNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI 406 (786)
Q Consensus 355 ~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~~ 406 (786)
..|++||+||+||++. | ......|+..|++|+.++.+++.+..
T Consensus 716 ~~Ts~pgVFAaGDv~~-G--------~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT-G--------GATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred cCCCCCCEEEecCcCC-C--------ccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3499999999999982 2 22456788889999999999997653
No 419
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.16 E-value=0.18 Score=59.62 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=32.9
Q ss_pred CcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 356 NKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 356 ~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|++||+||+||++ ++. ....+|+-.|+.||+++..|+.+.
T Consensus 597 ~Ts~~gVfA~GD~~-~g~--------~~vv~Ai~~Gr~AA~~i~~~l~~~ 637 (639)
T PRK12809 597 QTHLKKVFAGGDAV-HGA--------DLVVTAMAAGRQAARDMLTLFDTK 637 (639)
T ss_pred ccCCCCEEEcCCCC-CCc--------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 49999999999998 231 234778888999999999998653
No 420
>PRK06753 hypothetical protein; Provisional
Probab=92.15 E-value=1.1 Score=49.05 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
.+...|.+.+. +++++++++++++..++ +.+ .+.. .+|+ .++++.||-|.|-.+
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v-~v~~---~~g~--~~~~~~vigadG~~S 152 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENET-DKV-TIHF---ADGE--SEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecC-CcE-EEEE---CCCC--EEecCEEEECCCcch
Confidence 45666666554 46899999999998764 543 2332 4564 578999999999665
No 421
>PTZ00367 squalene epoxidase; Provisional
Probab=92.12 E-value=1.2 Score=51.78 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=43.0
Q ss_pred HHHHHHHHHH---hcCCceEEeceEEEeeeecCC---CCEEEEEEEEcCCC---------------------cEEEEEeC
Q psy9575 125 ALLHTLYQRN---LHAKTNFFIEWMAIDLISDSE---GDILGVVALEMETG---------------------NIMILESK 177 (786)
Q Consensus 125 ~i~~~L~~~~---~~~Gv~i~~~~~v~~L~~~~~---g~v~G~~~~~~~~g---------------------~~~~i~Ak 177 (786)
.+...|.+.+ ...+|++++ ..+++++.+++ +++.|+.... .++ +...+.|+
T Consensus 132 ~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~Ad 209 (567)
T PTZ00367 132 DFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTE-AEKYDVPENPFREDPPSANPSATTVRKVATAP 209 (567)
T ss_pred HHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEec-CCcccccccccccccccccccccccceEEEeC
Confidence 3556677766 345899975 57899887652 2488887643 221 12468999
Q ss_pred eEEEcCCCCCcc
Q psy9575 178 ITILATGGGGRI 189 (786)
Q Consensus 178 aVVlATGG~~~~ 189 (786)
-||.|.|..+..
T Consensus 210 LvVgADG~~S~v 221 (567)
T PTZ00367 210 LVVMCDGGMSKF 221 (567)
T ss_pred EEEECCCcchHH
Confidence 999999988853
No 422
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=92.09 E-value=0.081 Score=55.92 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred hhCcccCcccCCCCCcccCCCCCCCH
Q psy9575 695 YECILCGCCSTACPSFWWNSDRFVGP 720 (786)
Q Consensus 695 ~~CI~Cg~C~~~CP~~~~~~~~~~gp 720 (786)
+.|=.|.+|+++||+..........+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~ 210 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDA 210 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccch
Confidence 79999999999999976554433333
No 423
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.04 E-value=0.19 Score=57.10 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=29.3
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
|++||+||+||++ ++. .....|+-.|++||.++.+++
T Consensus 429 T~~~gVfa~GD~~-~~~--------~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 429 TTNPKIFAGGDAV-RGA--------DLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCCCEEEECCcC-CCc--------cHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999998 232 124567777999999998876
No 424
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=91.97 E-value=0.46 Score=55.05 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHh-cCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 129 TLYQRNL-HAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 129 ~L~~~~~-~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
++...++ +.|++|+.++.|++|+.++ ++++||...+ .++....+.||.||||+|.+.
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKK-GGRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEe-CCcEEEEEEeeeEEEccCCCC
Confidence 3344444 4589999999999999986 8999998865 223344568899999999865
No 425
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=91.96 E-value=0.59 Score=53.73 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
...+.++|.+.+++.|++|+.++.|.++..++ ++++|+.+ .+|+ .+.|+.||+|++-
T Consensus 218 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~---~~g~--~~~ad~VI~a~~~ 274 (502)
T TIGR02734 218 TGALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHL---ADGE--RLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEE---CCCC--EEECCEEEECCcH
Confidence 36788999999999999999999999999886 88888866 4564 5789999998875
No 426
>PRK05868 hypothetical protein; Validated
Probab=91.77 E-value=3.4 Score=45.41 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+.+.|.+ +...|+++++++.++++..++ +.| .+.. .+|+ .++||-||-|.|..+..
T Consensus 106 ~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~---~dg~--~~~adlvIgADG~~S~v 162 (372)
T PRK05868 106 DLVELLYG-ATQPSVEYLFDDSISTLQDDG-DSV-RVTF---ERAA--AREFDLVIGADGLHSNV 162 (372)
T ss_pred HHHHHHHH-hccCCcEEEeCCEEEEEEecC-CeE-EEEE---CCCC--eEEeCEEEECCCCCchH
Confidence 34444443 334689999999999997654 433 2333 4564 47899999999987743
No 427
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.76 E-value=0.27 Score=55.17 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=38.8
Q ss_pred ccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|+|.||+..| .|++||+||+|||+ .+.+. ........|.-.|..+++++...+.+.
T Consensus 294 ~G~I~Vd~~l~--------~~~~~~IfAiGD~a--~~~~~--~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 294 RGRISVDDHLR--------VKPIPNVFALGDCA--ANEER--PLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCcEEeCCCcc--------cCCCCCEEEEeccc--cCCCC--CCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 47778877766 26899999999998 33221 111223446667999999998887553
No 428
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=91.58 E-value=0.046 Score=58.70 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=15.1
Q ss_pred cccccccccchhhCCCC
Q psy9575 751 LFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~g 767 (786)
...|+.||.|..+||.+
T Consensus 213 ~~~Ci~Cg~Ci~~CP~~ 229 (341)
T TIGR02066 213 VEKCIYCGNCYTMCPAM 229 (341)
T ss_pred cccCCcCCchHHhCchh
Confidence 46799999999999974
No 429
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.56 E-value=0.21 Score=54.67 Aligned_cols=56 Identities=13% Similarity=0.054 Sum_probs=39.6
Q ss_pred ccCcccCCCCcccccCCCCCc-ccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 337 MGGIPTNIYGQVIIPNNDNNK-IVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 337 ~GGi~vd~~~~vl~~~~~~~t-~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|+|.||+..| | ++||+||+||++ .+.+. ........|.-.|+++|++++..+++.
T Consensus 257 ~g~i~vd~~l~---------~~~~~~Iya~GD~~--~~~~~--~~~~~~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 257 DGFLRVDPTLQ---------SLSHPHVFAAGDCA--VITDA--PRPKAGVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred CCeEEECCccc---------cCCCCCEEEeeeee--ecCCC--CCCCchHHHHHhHHHHHHHHHHHhcCC
Confidence 47788887766 5 899999999998 33221 112233457778999999999887654
No 430
>PRK02106 choline dehydrogenase; Validated
Probab=91.49 E-value=0.34 Score=56.45 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=42.6
Q ss_pred cCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 136 HAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 136 ~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
+.+++|+.++.|++|+.++ ++++||...+ .++....+.||.||||+|++.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~-~~~~~~~~~ak~VILaaGai~ 262 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG-KRAVGVEYER-GGGRETARARREVILSAGAIN 262 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC-CeEEEEEEEe-CCcEEEEEeeeeEEEccCCCC
Confidence 4589999999999999986 8999999876 445566678999999999886
No 431
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.36 E-value=0.31 Score=60.56 Aligned_cols=70 Identities=10% Similarity=-0.128 Sum_probs=51.1
Q ss_pred cceeEEEEcCCCChhHHHHHHHchhccC-CC---cccc-cCCCCCcccceEEEeCCc----c-cccccccccccCcceEE
Q psy9575 571 YMQKFLVNLSSNDKMLLDALHRIKYDID-DS---LTLR-RSCREGVCGSDAMNINGK----N-GLACITNLNELKQPIII 640 (786)
Q Consensus 571 ~~~~~~v~~~~~~~tiL~al~~~~~~~~-~~---l~~~-~~Cr~g~Cg~C~V~vnG~----~-~laC~t~v~~~~~~~~i 640 (786)
+++.-.+++.+| .||.-||...|+... -+ =.|| ..|..+.|--|.|+|||. + .+||.|++.+||.+.+.
T Consensus 16 ~~dg~~~~~~~g-~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~~~ac~~~~~~gm~~~~~ 94 (985)
T TIGR01372 16 TFDGKSYSGFAG-DTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPNTRATTQELYDGLVATSQ 94 (985)
T ss_pred EECCEEeecCCC-CHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCCCCCccceeEEcccCCEEecc
Confidence 456666788887 899999999987531 12 2344 458777789999999973 3 46999999998765544
Q ss_pred C
Q psy9575 641 R 641 (786)
Q Consensus 641 ~ 641 (786)
.
T Consensus 95 ~ 95 (985)
T TIGR01372 95 N 95 (985)
T ss_pred c
Confidence 3
No 432
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=91.24 E-value=0.05 Score=51.96 Aligned_cols=18 Identities=28% Similarity=0.718 Sum_probs=15.8
Q ss_pred hhhCcccC--cccCCCCCcc
Q psy9575 694 LYECILCG--CCSTACPSFW 711 (786)
Q Consensus 694 ~~~CI~Cg--~C~~~CP~~~ 711 (786)
...|++|+ .|+.+||+..
T Consensus 61 ~~~C~~C~~~~C~~~CP~~a 80 (161)
T TIGR02951 61 SISCNHCADPACVKNCPTGA 80 (161)
T ss_pred CccCCCcCCcchHHhCCCCC
Confidence 57899999 9999999753
No 433
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=91.22 E-value=2.2 Score=50.06 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCce-EEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 125 ALLHTLYQRNLHAKTN-FFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~-i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
.+.+.|.+.+ +.. ++.++.|+++..++ +.|. +.. .+|+ .+.|+.||.|.|..+..
T Consensus 195 ~L~~~L~~al---g~~~i~~g~~V~~I~~~~-d~Vt-V~~---~dG~--ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 195 TLQQILARAV---GEDVIRNESNVVDFEDSG-DKVT-VVL---ENGQ--RYEGDLLVGADGIWSKV 250 (668)
T ss_pred HHHHHHHhhC---CCCEEEcCCEEEEEEEeC-CEEE-EEE---CCCC--EEEcCEEEECCCCCcHH
Confidence 4556665433 333 56788999998775 5554 333 4554 57899999999998853
No 434
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=90.69 E-value=0.15 Score=56.87 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=27.0
Q ss_pred ccccccccccchhhCCCCCChHHHHHHHHH
Q psy9575 750 RLFRCRSIMNCVDTCPKGLNPNRSINKIKE 779 (786)
Q Consensus 750 ~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~ 779 (786)
....|+.||.|+++||.+|.+..+++.++.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~ 401 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIV 401 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHc
Confidence 346899999999999999999999988874
No 435
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.66 E-value=1.2 Score=55.59 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=30.9
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
|++||+|||||++ +.. ++..|+..|++||..|+..+..
T Consensus 436 t~v~gVyaaGD~~--g~~--------~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAAN--GLF--------GLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccC--Ccc--------CHHHHHHHHHHHHHHHHHHcCC
Confidence 7899999999987 432 4677888899999999887744
No 436
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=90.62 E-value=0.042 Score=53.56 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=34.6
Q ss_pred hhhCccc--CcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChH
Q psy9575 694 LYECILC--GCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 694 ~~~CI~C--g~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~ 771 (786)
...|.+| --|+.+||+...... + .+ -+..+ ....|+.|+.|+.+||.|++.-
T Consensus 66 ~~~C~HC~~ppCv~vCPtgA~~k~----~----------~d--------GiV~v----d~d~CIGC~yCi~ACPyga~~~ 119 (203)
T COG0437 66 SISCMHCEDPPCVKVCPTGALFKR----E----------ED--------GIVLV----DKDLCIGCGYCIAACPYGAPQF 119 (203)
T ss_pred cccccCCCCCcccccCCCcceEEe----c----------CC--------CEEEe----cCCcccCchHHHhhCCCCCcee
Confidence 5789999 579999998621100 0 00 01111 2367999999999999999743
No 437
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=90.61 E-value=0.087 Score=42.21 Aligned_cols=18 Identities=39% Similarity=0.999 Sum_probs=16.1
Q ss_pred chhhCcccCcccCCCCCc
Q psy9575 693 GLYECILCGCCSTACPSF 710 (786)
Q Consensus 693 ~~~~CI~Cg~C~~~CP~~ 710 (786)
....|+.||+|+.+||+.
T Consensus 48 ~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CCccCCCcChHhhhcCCC
Confidence 367999999999999985
No 438
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=90.58 E-value=0.12 Score=53.44 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=31.8
Q ss_pred HHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccc
Q psy9575 586 LLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629 (786)
Q Consensus 586 iL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t 629 (786)
+.++|++.|+...=++.-...|..|+||+|+|.++|..+++|.-
T Consensus 196 v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~~~~~~C~~ 239 (250)
T PRK00054 196 VVEILKEKKVPAYVSLERRMKCGIGACGACVCDTETGGKRVCKD 239 (250)
T ss_pred HHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCCCCEEEeCc
Confidence 44555555553222445567899999999999999987789953
No 439
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.50 E-value=0.33 Score=56.60 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=33.1
Q ss_pred CcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhhc
Q psy9575 356 NKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405 (786)
Q Consensus 356 ~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~~ 405 (786)
.|++||+||+||++ .+ ......|+-.|+.|+.++..++.+.
T Consensus 406 ~ts~~~Vfa~GD~~-~g--------~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 406 MTGRPGVFAGGDMV-PG--------PRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred cCCCCCEEeccCcC-CC--------chHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48999999999998 22 2356788888999999999998653
No 440
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=90.45 E-value=0.39 Score=49.91 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
|-.+...|.++.++.|.-++.+-+|++....+ ++|..+.+. ++.-+.++|+..|||||+|=
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~tr---n~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTR---NHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEec---ccccCCCChhHeeeeccccc
Confidence 55678889999999999999999999998886 999988884 45556899999999999863
No 441
>KOG3256|consensus
Probab=90.40 E-value=0.082 Score=48.34 Aligned_cols=18 Identities=44% Similarity=1.089 Sum_probs=16.5
Q ss_pred hhhCcccCcccCCCCCcc
Q psy9575 694 LYECILCGCCSTACPSFW 711 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~ 711 (786)
+.+||-||.|+.+||+-.
T Consensus 149 mtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 149 MTKCIYCGFCQEACPVDA 166 (212)
T ss_pred ceeeeeecchhhhCCccc
Confidence 889999999999999864
No 442
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=90.19 E-value=0.31 Score=59.38 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=33.8
Q ss_pred cCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 338 GGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 338 GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
|.|.||+..+ |++||+||+||++. +. .....|+..|+.||++++...
T Consensus 795 G~I~VDetlq---------Ts~pgVFAaGD~a~-Gp--------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 795 GWPVVDANGE---------TSLTNVYMIGDVQR-GP--------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCEEeCCCcc---------cCCCCEEEEecccc-Cc--------hHHHHHHHHHHHHHHHHhhhc
Confidence 4455555554 89999999999982 21 245677778999998887654
No 443
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.15 E-value=0.17 Score=56.14 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=26.6
Q ss_pred cccccccccchhhCCCCCChHHHHHHHHH
Q psy9575 751 LFRCRSIMNCVDTCPKGLNPNRSINKIKE 779 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~ 779 (786)
...|+.||.|+++||+++.+..+.+.++.
T Consensus 372 ~~aCI~CG~C~~vCPm~L~P~~L~~a~~~ 400 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLDIPPTLLLKALIA 400 (447)
T ss_pred ccceeECChHhhcCCCCCCHHHHHHHHHc
Confidence 46799999999999999999999988875
No 444
>PRK06996 hypothetical protein; Provisional
Probab=90.03 E-value=2.5 Score=46.96 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGG 186 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~ 186 (786)
..+.+.|.+++++.|++++.++.++++..++ +.|. + .+...+|+ ..++|+.||-|.|+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v~-v-~~~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGVT-L-ALGTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeEE-E-EECCCCcc-eEEeeeEEEECCCCC
Confidence 3678899999999999999999999987664 3332 1 12111232 469999999999964
No 445
>PLN02612 phytoene desaturase
Probab=89.88 E-value=1 Score=52.45 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
..+...|.+.+++.|++|+++++|.+|..+++++++++.+ .+|+ .+.|++||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~---~~G~--~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLL---TNGS--VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEE---CCCc--EEECCEEEECCCH
Confidence 4678889988888999999999999999865577777665 4564 5889999999864
No 446
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.81 E-value=0.3 Score=59.23 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=33.7
Q ss_pred HhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 134 NLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 134 ~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
+++.||+++.++.|+.+..+. ..| .+ .+|+ .+.+|.+|||||+...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~-k~V---~~---~~g~--~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQ-KQV---IT---DAGR--TLSYDKLILATGSYPF 109 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCC-CEE---EE---CCCc--EeeCCEEEECCCCCcC
Confidence 456799999999999987664 322 22 3453 5789999999998764
No 447
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=89.80 E-value=0.027 Score=48.50 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=28.4
Q ss_pred hhhCcccC--cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCC
Q psy9575 694 LYECILCG--CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 694 ~~~CI~Cg--~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~ 769 (786)
...|.+|- .|+++||+.....++-.| +..+ ....|+.|+.|..+||.++.
T Consensus 6 ~~~C~hC~~ppC~~~CP~~Ai~~~~~~G----------------------~V~i----d~~~CigC~~C~~aCP~~ai 57 (98)
T PF13247_consen 6 PVQCRHCEDPPCVEACPTGAIYKDPEDG----------------------IVVI----DEDKCIGCGYCVEACPYGAI 57 (98)
T ss_dssp EEC---BSS-HHHHHCTTTSEEEETTTS-----------------------EEE-----TTTCCTHHHHHHH-TTS-E
T ss_pred CCcCcCcCCCchhhhCCccceEEEcCCC----------------------eEEe----chhhccCchhhhhhhccCcc
Confidence 56899997 999999986321110000 0011 23579999999999998875
No 448
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=89.66 E-value=0.11 Score=49.50 Aligned_cols=19 Identities=42% Similarity=0.983 Sum_probs=17.1
Q ss_pred hhhCcccCcccCCCCCccc
Q psy9575 694 LYECILCGCCSTACPSFWW 712 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~ 712 (786)
+.+||-||.|+++||+...
T Consensus 94 ~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 94 LGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred cccccccCchhhhCchhhh
Confidence 7899999999999998753
No 449
>PLN02906 xanthine dehydrogenase
Probab=89.65 E-value=0.26 Score=62.73 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=44.7
Q ss_pred hhHHHHHHHchhccCCCcccccCCCCCcccceEEEeC------C----cccccccccccc--cCcceEECCCC
Q psy9575 584 KMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNIN------G----KNGLACITNLNE--LKQPIIIRPLP 644 (786)
Q Consensus 584 ~tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vn------G----~~~laC~t~v~~--~~~~~~i~p~~ 644 (786)
+|||+.|+..+. -....+|..|.||+|.|.|+ | +++.||.+++.. |..+.|+|-+.
T Consensus 2 ~~ll~~LR~~~l-----~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~ 69 (1319)
T PLN02906 2 QTLLEYLRDLGL-----TGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIG 69 (1319)
T ss_pred CcHHHHHHhCCC-----CCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCC
Confidence 689999997443 24467899999999999999 5 466699999964 46788899885
No 450
>PRK07208 hypothetical protein; Provisional
Probab=89.63 E-value=1.3 Score=50.58 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCC
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGG 186 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~ 186 (786)
..+...|.+.+++.|++|+++++|++|..++ ++++.++..+..+|+...+.|+.||+|+-..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 4688899999988999999999999999986 5443333333245655568999999998854
No 451
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=89.42 E-value=0.14 Score=38.76 Aligned_cols=17 Identities=35% Similarity=0.962 Sum_probs=12.7
Q ss_pred cccccccchhhCCCCCC
Q psy9575 753 RCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 753 ~C~~Cg~C~~vCP~gi~ 769 (786)
.|+.||.|+.+||.++.
T Consensus 1 kCi~Cg~C~~~CP~~~~ 17 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVI 17 (55)
T ss_dssp C--TTTHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCe
Confidence 49999999999999875
No 452
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=89.39 E-value=0.14 Score=52.94 Aligned_cols=62 Identities=19% Similarity=0.090 Sum_probs=46.0
Q ss_pred ccccCcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhh
Q psy9575 335 YQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLEL 403 (786)
Q Consensus 335 ~t~GGi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~ 403 (786)
|..=||.||.+.+..+. | ..+.+|||+|.+. ||+...- -|-+-+-|+++++.|++.|++.+.
T Consensus 357 ~~qfGV~tD~~lrp~~~-g---~~~eNL~aiGavl-gGfdpi~--egcGsGVaivta~~aa~qi~~~~~ 418 (421)
T COG3075 357 YQQFGVTTDDTLRPSRG-G---QTIENLYAIGAVL-GGFDPIA--EGCGSGVAIVTALHAAEQIAERAG 418 (421)
T ss_pred hHHhCcccccccCcccc-c---hHHHHHHHHHHHh-cCCcHHH--hcCCcchHHHHHHHHHHHHHHHhc
Confidence 44459999999987653 3 7999999999999 6764321 144455688889999999887653
No 453
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=89.38 E-value=0.12 Score=48.62 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=16.0
Q ss_pred ccccccccchhhCCCCCC
Q psy9575 752 FRCRSIMNCVDTCPKGLN 769 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~gi~ 769 (786)
..|+.||.|+.+||.|.=
T Consensus 82 ekCiGC~~C~~aCPfGai 99 (165)
T COG1142 82 EKCIGCKLCVVACPFGAI 99 (165)
T ss_pred hhccCcchhhhcCCcceE
Confidence 579999999999998864
No 454
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=89.15 E-value=4.4 Score=45.63 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCC---ceEEeceEEEeeeec-----CCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAK---TNFFIEWMAIDLISD-----SEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~G---v~i~~~~~v~~L~~~-----~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+...|.+.+.+.+ ++++++++++++..+ +++.-+.+.. .+|+ .++|+-||-|.|..+.
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~---~~g~--~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITL---SDGQ--VLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEE---cCCC--EEEeeEEEEecCCCCh
Confidence 357788888887764 999999999999752 1122223332 4564 6899999999999884
No 455
>KOG2311|consensus
Probab=88.83 E-value=0.79 Score=49.96 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=38.0
Q ss_pred HHHHHHHHHhc-CCceEEeceEEEeeeecCCC----CEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 126 LLHTLYQRNLH-AKTNFFIEWMAIDLISDSEG----DILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 126 i~~~L~~~~~~-~Gv~i~~~~~v~~L~~~~~g----~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
+.+.|.+.+.. .+.+|+++ .|.+|+..+.+ +|.|++.+| |. .|.|+.|||.||-|=
T Consensus 126 Ykk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d---gt--~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 126 YKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD---GT--VVYAESVILTTGTFL 186 (679)
T ss_pred HHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec---Cc--EeccceEEEeeccce
Confidence 34455555543 26777754 57888775412 378888754 64 689999999999874
No 456
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=88.74 E-value=0.31 Score=38.95 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.4
Q ss_pred ChHhhhcHhCCCCEEEEEecCCCCChh
Q psy9575 1 MRASLQLAQEGLNVAILSKVFPTRSHT 27 (786)
Q Consensus 1 L~AA~~aa~~G~~V~vvek~~~~~g~s 27 (786)
|+||+.|+++|.+|+|+||....+|.+
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSSSSGGG
T ss_pred HHHHHHHHHCCCcEEEEecCcccCcce
Confidence 579999999999999999998876553
No 457
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.68 E-value=0.81 Score=52.24 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
-..++++|.+.++++|++|+++++|.+|++++ |+.+++.. .+| ..+.||.||.+..-
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~---~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRT---SDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEec---ccc--ceeccceeEecCch
Confidence 35799999999999999999999999999997 88555544 345 46889999988775
No 458
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=88.63 E-value=0.2 Score=38.74 Aligned_cols=16 Identities=44% Similarity=1.095 Sum_probs=11.4
Q ss_pred hhhCcccCcccCCCCC
Q psy9575 694 LYECILCGCCSTACPS 709 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~ 709 (786)
.+.|+.||.|+.+||+
T Consensus 38 ~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV 53 (59)
T ss_dssp -TT--S-SCCCCCSSS
T ss_pred cccCcCcCcccccCCC
Confidence 5799999999999996
No 459
>PLN02852 ferredoxin-NADP+ reductase
Probab=88.28 E-value=0.46 Score=53.80 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=39.1
Q ss_pred CcccCCCCcccccCCCCCcccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHhhh
Q psy9575 339 GIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK 404 (786)
Q Consensus 339 Gi~vd~~~~vl~~~~~~~t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~~~ 404 (786)
|+..|.+|+|+.... .+|++||+||+||+.. |..| +=+.++.+ +..++.++.+++..
T Consensus 367 gv~~n~~G~V~~d~~-~~T~ipGvyAaGDi~~-Gp~g---vI~t~~~d----A~~ta~~i~~d~~~ 423 (491)
T PLN02852 367 GVVPNVHGRVLSSAS-GADTEPGLYVVGWLKR-GPTG---IIGTNLTC----AEETVASIAEDLEQ 423 (491)
T ss_pred CeeECCCceEEeCCC-CccCCCCEEEeeeEec-CCCC---eeeecHhh----HHHHHHHHHHHHHc
Confidence 566677777664322 2599999999999983 3322 33445555 78888888888755
No 460
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=88.20 E-value=7.5 Score=45.98 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCC--ceEEeceEEEeeeecCCC-CEEEEEEEEc---CCCcEEEEEeCeEEEcCCCCCc
Q psy9575 125 ALLHTLYQRNLHAK--TNFFIEWMAIDLISDSEG-DILGVVALEM---ETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 125 ~i~~~L~~~~~~~G--v~i~~~~~v~~L~~~~~g-~v~G~~~~~~---~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.+.|.+.+.+.| +++..+++++++..++++ .-+-+.+.+. .+|+..+++||.||-|-|+.+.
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 46678888887765 578889999999876422 2233444332 1465568999999999998874
No 461
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=88.01 E-value=0.11 Score=39.04 Aligned_cols=15 Identities=47% Similarity=1.214 Sum_probs=11.3
Q ss_pred hhhCcccCcccCCCC
Q psy9575 694 LYECILCGCCSTACP 708 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP 708 (786)
..+||.||.|+.+||
T Consensus 38 ~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 38 PERCIGCGACVEVCP 52 (52)
T ss_dssp TTT--TTSHHHHH-T
T ss_pred cccccccChhhhhCc
Confidence 789999999999998
No 462
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=87.70 E-value=4 Score=46.96 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHhcCCc--eEEeceEEEeeeecCCCCEEEEEEE-EcCCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 122 TGHALLHTLYQRNLHAKT--NFFIEWMAIDLISDSEGDILGVVAL-EMETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv--~i~~~~~v~~L~~~~~g~v~G~~~~-~~~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
+..++.+-|...++..+. .|.++|.|+++.+.++....|-+.+ ...+|+...-..|+||+|||.++.-
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 456788888888887665 5889999999987653333343222 2245655455579999999988743
No 463
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=87.60 E-value=2.9 Score=46.71 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+.+. ++.+..+++++++..++ +.+ .+.. .+|. .+.|+.||.|.|..+.
T Consensus 105 ~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~~-~v~~---~~g~--~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 105 ADFLDALLKHLP--EGIASFGKRATQIEEQA-EEV-QVLF---TDGT--EYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHHhCC--CceEEcCCEEEEEEecC-CcE-EEEE---cCCC--EEEeeEEEECCCccHH
Confidence 356667776653 35677899999998765 443 2322 4564 5889999999998874
No 464
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=87.22 E-value=0.34 Score=47.79 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=36.4
Q ss_pred HHHHhcCCceEEeceEEEeeeecCCCCEE-EEE-EEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 131 YQRNLHAKTNFFIEWMAIDLISDSEGDIL-GVV-ALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 131 ~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~-G~~-~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
.+.+...+++++.++.++++.... +++. +.. .....+++...+.++.||||||+..
T Consensus 65 ~~~~~~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 65 VDQLKNRGVEIRLNAKVVSIDPES-KRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHHHHHTHEEEHHHTEEEEEEST-TEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred ccccccceEEEeeccccccccccc-cccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 334445688888888888887764 5431 111 1111345567899999999999654
No 465
>KOG2495|consensus
Probab=87.22 E-value=5.1 Score=43.51 Aligned_cols=63 Identities=8% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcC--CceEEeceEEEeeeecCCCCEEEEEEEEc-CCCcEEEEEeCeEEEcCCCCCcc
Q psy9575 124 HALLHTLYQRNLHA--KTNFFIEWMAIDLISDSEGDILGVVALEM-ETGNIMILESKITILATGGGGRI 189 (786)
Q Consensus 124 ~~i~~~L~~~~~~~--Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~-~~g~~~~i~AkaVVlATGG~~~~ 189 (786)
+.|++.....+++. ++.+ ...+.+++-.+. .+| -...... .......|.-|..|+|+|.-.+.
T Consensus 107 rSIvEPIr~i~r~k~~~~~y-~eAec~~iDp~~-k~V-~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 107 RSIVEPIRAIARKKNGEVKY-LEAECTKIDPDN-KKV-HCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred hhhhhhHHHHhhccCCCceE-EecccEeecccc-cEE-EEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 46777776666654 4444 456666665553 332 2222210 11233567789999999987643
No 466
>PLN02785 Protein HOTHEAD
Probab=87.20 E-value=1.4 Score=51.45 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHhcCCceEEeceEEEeeeecCC---CCEEEEEEEEcCCCcEEE-E----EeCeEEEcCCCCC
Q psy9575 131 YQRNLHAKTNFFIEWMAIDLISDSE---GDILGVVALEMETGNIMI-L----ESKITILATGGGG 187 (786)
Q Consensus 131 ~~~~~~~Gv~i~~~~~v~~L~~~~~---g~v~G~~~~~~~~g~~~~-i----~AkaVVlATGG~~ 187 (786)
...+...+++++.++.|++|+.+++ ++++||...+ .+|.... + .++.||||+|+++
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~ 290 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIG 290 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE-CCCceEEEEeecccCceEEecccccC
Confidence 3444556899999999999998752 3899999877 3454333 2 2489999999987
No 467
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=87.10 E-value=1 Score=45.66 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=37.8
Q ss_pred EcCCCChhHHHHHHHchhccCCCcccccCCCC-CcccceEEEeC--Cc------------------ccccccccccccCc
Q psy9575 578 NLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE-GVCGSDAMNIN--GK------------------NGLACITNLNELKQ 636 (786)
Q Consensus 578 ~~~~~~~tiL~al~~~~~~~~~~l~~~~~Cr~-g~Cg~C~V~vn--G~------------------~~laC~t~v~~~~~ 636 (786)
.++.| .++|.+|...|+. ++ ..|.. |.||-|-|+|. |. .+|||.++|+..|.
T Consensus 50 t~~aG-~kLL~~L~~~gif-i~-----SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ~~Vk~dm~ 122 (410)
T COG2871 50 TVPAG-GKLLGALASSGIF-IS-----SACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQVNVKHDMD 122 (410)
T ss_pred ecCCc-hhHHHHHHhCCcc-cc-----cCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEEecccccce
Confidence 34556 6899999998883 33 34664 88999999884 21 46799999987653
No 468
>KOG4254|consensus
Probab=86.97 E-value=0.92 Score=49.24 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCC
Q psy9575 125 ALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGG 187 (786)
Q Consensus 125 ~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~ 187 (786)
.+..++++.++++|.+|+++..|.+++.|+ |+++||.. .+|+ .+++|+||=-++-|-
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L---~dG~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRL---ADGT--EVRSKIVVSNATPWD 321 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEe---cCCc--EEEeeeeecCCchHH
Confidence 678899999999999999999999999997 99999988 5675 578888887776553
No 469
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=86.76 E-value=0.63 Score=45.28 Aligned_cols=18 Identities=44% Similarity=1.113 Sum_probs=15.4
Q ss_pred hhhCcccCcccCCCCCcc
Q psy9575 694 LYECILCGCCSTACPSFW 711 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~ 711 (786)
..+|+.||.|+.+||...
T Consensus 72 ~~~C~~Cg~C~~vCP~~A 89 (180)
T PRK12387 72 LGRCIFCGRCEEVCPTAA 89 (180)
T ss_pred cccCcCccchhhhcCcCc
Confidence 568999999999999753
No 470
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=86.71 E-value=0.44 Score=53.50 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=31.8
Q ss_pred hcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 135 LHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 135 ~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
.+.|++++.++.|+.+..++ +. +.+.+..+++...+.++.||||||+...
T Consensus 55 ~~~gv~~~~~~~V~~id~~~-~~---v~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDER-QT---VVVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred HhcCCeEEecCEEEEEECCC-CE---EEEEECCCCCEEecCCCEEEECCCCCCC
Confidence 45689998888998887654 33 2222212233222339999999998653
No 471
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=86.52 E-value=0.13 Score=43.59 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred ccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCC
Q psy9575 703 CSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG 767 (786)
Q Consensus 703 C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~g 767 (786)
|+.+||+. ++....++.-..+. ..|+.||.|..+||.+
T Consensus 39 C~~aCPag---------------A~~~~e~G~V~vd~------------e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 39 LVKACPAG---------------LYKKQDDGSVRFDY------------AGCLECGTCRILGLGS 76 (95)
T ss_pred HHHHCCHh---------------hcEeCCCCCEEEcC------------CCCCcchhhhhhcCCC
No 472
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=86.49 E-value=0.68 Score=56.74 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=26.4
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHH
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS 400 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~ 400 (786)
|++||+||+||++ .+. .....|+..|++||.+++.
T Consensus 803 Ts~pgVFAaGD~a-~GP--------~tVv~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 803 TNITNVFVIGDAN-RGP--------ATIVEAIADGRKAANAILS 837 (1012)
T ss_pred cCCCCEEEEeCcC-CCc--------cHHHHHHHHHHHHHHHHhc
Confidence 8999999999998 222 2356677778888877754
No 473
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=86.29 E-value=0.22 Score=61.42 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=35.7
Q ss_pred chhhCcccCcccC--CCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchh-hCCCCCC
Q psy9575 693 GLYECILCGCCST--ACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVD-TCPKGLN 769 (786)
Q Consensus 693 ~~~~CI~Cg~C~~--~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~-vCP~gi~ 769 (786)
+...|..||.|.. -||.......++ |.+ .. ...+.|..|+.|.+ +||+=+.
T Consensus 627 n~~vCegCg~C~~~s~C~ai~~~~t~~-grK---------------------~~----Id~s~Cn~~~~C~~G~CPsfvt 680 (1159)
T PRK13030 627 NEAVCEGCGDCGVQSNCLSVEPVETPF-GRK---------------------RR----IDQSSCNKDFSCVNGFCPSFVT 680 (1159)
T ss_pred cccccCCchhhhhccCCcceeeccccC-Ccc---------------------EE----ECHHHCCCccccccCCCCCCeE
Confidence 4789999999997 799875322210 000 01 13478999999999 9997665
Q ss_pred h
Q psy9575 770 P 770 (786)
Q Consensus 770 ~ 770 (786)
+
T Consensus 681 v 681 (1159)
T PRK13030 681 V 681 (1159)
T ss_pred e
Confidence 4
No 474
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=86.01 E-value=2.3 Score=48.08 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+-+.|.+.+++.||+++.++ |+++..+++|.|.++.. .+|+ .|+|+-||-|||-.+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~---~~g~--~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRL---DDGR--TIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEE---TTSE--EEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEE---CCCC--EEEEeEEEECCCccch
Confidence 4678889999999999999885 77777765588888876 4564 6899999999996664
No 475
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=85.73 E-value=0.13 Score=39.98 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=12.6
Q ss_pred cccccccchhhCCCCCChH
Q psy9575 753 RCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 753 ~C~~Cg~C~~vCP~gi~~~ 771 (786)
.|+.||.|+.+||+++.+.
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~ 19 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATP 19 (61)
T ss_dssp T----STTGGGSHHHHHCT
T ss_pred CCCCCCcCcccCCCccccC
Confidence 4999999999999888743
No 476
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=85.71 E-value=0.34 Score=47.86 Aligned_cols=54 Identities=31% Similarity=0.694 Sum_probs=40.6
Q ss_pred hhhCcccCcccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCCCCChHHH
Q psy9575 694 LYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRS 773 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~ 773 (786)
-.-|+.||.|...||.... .-.||.+ ....|.-||.|...||..+-+ ++
T Consensus 189 g~~C~G~~TC~A~CP~~ai---~c~Gc~g---------------------------~~~~~~~~Ga~~v~~~rs~~~-ei 237 (247)
T COG1941 189 GLPCMGCGTCAASCPSRAI---PCRGCRG---------------------------NIPRCIKCGACFVSCPRSKGP-EI 237 (247)
T ss_pred CCcccCchhhhccCCccCC---cccCCcC---------------------------CcccchhhhHHHHHHhHHhhH-HH
Confidence 4589999999999998642 1223331 235799999999999998888 77
Q ss_pred HHHHH
Q psy9575 774 INKIK 778 (786)
Q Consensus 774 i~~lr 778 (786)
+.++.
T Consensus 238 ~~~l~ 242 (247)
T COG1941 238 IEELK 242 (247)
T ss_pred HHHhh
Confidence 66654
No 477
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=85.55 E-value=0.2 Score=61.52 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=34.9
Q ss_pred chhhCcccCcccC--CCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchh-hCCCCCC
Q psy9575 693 GLYECILCGCCST--ACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVD-TCPKGLN 769 (786)
Q Consensus 693 ~~~~CI~Cg~C~~--~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~-vCP~gi~ 769 (786)
+...|..||-|.. -||.......++ |.+ .. ...+.|..|+.|++ +||+=+.
T Consensus 655 n~~vCeGCgdC~~~snC~ai~p~et~~-grK---------------------~~----Idqs~Cn~d~sC~~G~CPsFvt 708 (1186)
T PRK13029 655 NELVCEGCGDCSVQSNCLAVQPVETEF-GRK---------------------RK----INQSSCNKDFSCVKGFCPSFVT 708 (1186)
T ss_pred cccccCCchhhhhccCCceeeeccccC-Ccc---------------------EE----ECHhHCCCccccccCCCCCcee
Confidence 4789999999996 799875332211 100 01 13478999999999 9998544
No 478
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=85.48 E-value=2.8 Score=44.21 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHHHHhcC-CceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCC
Q psy9575 130 LYQRNLHA-KTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATG 184 (786)
Q Consensus 130 L~~~~~~~-Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATG 184 (786)
+.+.+++. ||+++.++.+.++..+ +++.++...+..+|+...+.++.||+|+|
T Consensus 182 ~~~~l~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 182 LLDRLRKNPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred HHHHHHhCCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 34556666 9999999999998754 46777776554556667899999999999
No 479
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=85.05 E-value=2.8 Score=47.03 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATG 184 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATG 184 (786)
..+|.++|.+.++..|.+++.+++|.+|..+++++++|+.. .+|+ .++|+.||....
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~---~~Ge--~i~a~~VV~~~s 287 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKS---EGGE--VAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEE---CCCc--EEECCEEEECcc
Confidence 34799999999999999999999999999875478888876 5675 578999998554
No 480
>PLN02487 zeta-carotene desaturase
Probab=85.05 E-value=3.7 Score=47.57 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=50.7
Q ss_pred EecCCcHHHHHHHHHHHHhcCCceEEeceEEEeeeecC--CC--CEEEEEEEEcCCCcEEEEEeCeEEEcCCCC
Q psy9575 117 AVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDS--EG--DILGVVALEMETGNIMILESKITILATGGG 186 (786)
Q Consensus 117 ~~~~~~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~--~g--~v~G~~~~~~~~g~~~~i~AkaVVlATGG~ 186 (786)
+.....+..+...+.+.+++.|++|+.++.|..|..+. ++ +|.|+.+.+ +++...+.||+||+|++-.
T Consensus 288 ~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 288 MLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred ecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHH
Confidence 33333455688999999999999999999999999873 23 478887631 2333458899999999955
No 481
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=84.92 E-value=0.22 Score=51.38 Aligned_cols=18 Identities=28% Similarity=0.835 Sum_probs=15.8
Q ss_pred cccccccccchhhCCCCC
Q psy9575 751 LFRCRSIMNCVDTCPKGL 768 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi 768 (786)
...|+.|+.|.++||++.
T Consensus 200 ~~~C~~C~~C~~vCP~~~ 217 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQ 217 (255)
T ss_pred cccCeEcCCccCcCCCCc
Confidence 357999999999999874
No 482
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=84.81 E-value=0.22 Score=61.25 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=35.8
Q ss_pred chhhCcccCcccC--CCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchh-hCCCCCC
Q psy9575 693 GLYECILCGCCST--ACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVD-TCPKGLN 769 (786)
Q Consensus 693 ~~~~CI~Cg~C~~--~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~-vCP~gi~ 769 (786)
+...|..||-|.. .||.......+| |.+ .. ...+.|..|+.|.+ +||+=+.
T Consensus 641 n~~vCegCgdC~~~s~C~ai~p~~t~~-grK---------------------~~----Idqs~Cn~d~sC~~G~CPsFvt 694 (1165)
T PRK09193 641 NEAVCEGCGDCSVKSNCLSVEPVETEF-GRK---------------------RR----IDQSSCNKDFSCLKGFCPSFVT 694 (1165)
T ss_pred cccccCCchhhhhccCCcceeeccccC-Ccc---------------------EE----ECHhHCCCccccccCCCCCcee
Confidence 4789999999996 799874322211 100 01 13478999999999 9998765
Q ss_pred h
Q psy9575 770 P 770 (786)
Q Consensus 770 ~ 770 (786)
+
T Consensus 695 v 695 (1165)
T PRK09193 695 V 695 (1165)
T ss_pred e
Confidence 4
No 483
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=84.78 E-value=0.24 Score=37.11 Aligned_cols=17 Identities=35% Similarity=0.923 Sum_probs=11.5
Q ss_pred hhhCcccCcccCCCCCc
Q psy9575 694 LYECILCGCCSTACPSF 710 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~ 710 (786)
.++|+.||.|+.+||+.
T Consensus 35 ~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 35 PDKCTGCGACVEVCPTG 51 (52)
T ss_dssp GGG----SHHHHHTTTS
T ss_pred chhCcCcChhhhhCcCc
Confidence 78999999999999973
No 484
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=84.59 E-value=0.3 Score=55.86 Aligned_cols=19 Identities=37% Similarity=0.884 Sum_probs=16.8
Q ss_pred hhhCcccCcccCCCCCccc
Q psy9575 694 LYECILCGCCSTACPSFWW 712 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~~ 712 (786)
.+.|+.||.|+.+||+...
T Consensus 191 ~SSCVsCG~CvtVCP~nAL 209 (978)
T COG3383 191 ESSCVSCGACVTVCPVNAL 209 (978)
T ss_pred cccccccCccceecchhhh
Confidence 5799999999999998653
No 485
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=84.44 E-value=2.6 Score=47.91 Aligned_cols=62 Identities=8% Similarity=0.145 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHhcCCceEEeceEEEeeeecC--CC--CEEEEEEEEcCCCc-EEEEEeCeEEEcCCCC
Q psy9575 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDS--EG--DILGVVALEMETGN-IMILESKITILATGGG 186 (786)
Q Consensus 122 ~g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~--~g--~v~G~~~~~~~~g~-~~~i~AkaVVlATGG~ 186 (786)
.+..+.+.|.+.+++.|++|+.+++|.+|..++ ++ +|+|+... +|+ ...+.||+||+|+.-.
T Consensus 217 ~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~---~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 217 PDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMS---KPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred cchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEe---cCCcceEEECCEEEECCChH
Confidence 345567889999999999999999999998863 12 37777663 232 1358899999999954
No 486
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=84.26 E-value=0.18 Score=42.35 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=31.9
Q ss_pred hchhhCcccC--cccCCCCCcccCCCCCCCHHHHHHHHHHhhcCcchhhHHHhhhccCCCccccccccccchhhCCC
Q psy9575 692 DGLYECILCG--CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPK 766 (786)
Q Consensus 692 ~~~~~CI~Cg--~C~~~CP~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 766 (786)
.+...|..|- .|+.+||+... .+.-++ .+. ...-.|+.||.|.-+||.
T Consensus 30 ~~~~~~~~~~~~~l~~aCPA~~Y---------------~~~~~g-------~l~-----~~yegClECGTCRvlc~~ 79 (99)
T COG2440 30 KDPDDCQECEDKPLIKACPAGCY---------------KLIDDG-------KLR-----FDYEGCLECGTCRVLCPH 79 (99)
T ss_pred CCchhhhhccchhhhhcCCHHHe---------------eECCCC-------cEE-----EeecCeeeccceeEecCC
Confidence 3367899999 99999998521 110001 011 123579999999999998
No 487
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=83.59 E-value=0.3 Score=38.80 Aligned_cols=16 Identities=31% Similarity=0.897 Sum_probs=14.1
Q ss_pred cccccccchhhCCCCC
Q psy9575 753 RCRSIMNCVDTCPKGL 768 (786)
Q Consensus 753 ~C~~Cg~C~~vCP~gi 768 (786)
.|..|+.|+++||++.
T Consensus 1 ~C~~C~~C~~~CP~~A 16 (67)
T PF13484_consen 1 FCITCGKCAEACPTGA 16 (67)
T ss_pred CCcchhHHHHhCcHhh
Confidence 3999999999999764
No 488
>KOG0430|consensus
Probab=83.57 E-value=2.2 Score=51.55 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=44.2
Q ss_pred eEEEEcCCCChhHHHHHHHchhccCCCcc-cccCCCCCcccceEEEeCCc---------cccccccccccc--CcceEEC
Q psy9575 574 KFLVNLSSNDKMLLDALHRIKYDIDDSLT-LRRSCREGVCGSDAMNINGK---------NGLACITNLNEL--KQPIIIR 641 (786)
Q Consensus 574 ~~~v~~~~~~~tiL~al~~~~~~~~~~l~-~~~~Cr~g~Cg~C~V~vnG~---------~~laC~t~v~~~--~~~~~i~ 641 (786)
+|+++.-+.++|++.-||+ +. .|+ -.-+|..|-||+|+|.+-.. .+=||-|++..- ..++|.|
T Consensus 11 ~~~~~~vdP~~TL~~fLR~-k~----~ltgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~~g~~VtT~E 85 (1257)
T KOG0430|consen 11 RVEVELLPPDLTLNTFLRE-KL----GLTGTKLGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSVHGLEVTTSE 85 (1257)
T ss_pred EeeEecCCcchhHHHHHHH-hc----CCcceeeccCCCCccceEEEEeccCCCceeEEeehhhhhhhcccccceEEEeee
Confidence 3334333334999999987 22 222 23679999999999999762 112898888643 4677777
Q ss_pred CCCC
Q psy9575 642 PLPG 645 (786)
Q Consensus 642 p~~~ 645 (786)
-+.+
T Consensus 86 GlGn 89 (1257)
T KOG0430|consen 86 GLGN 89 (1257)
T ss_pred cccc
Confidence 7744
No 489
>PRK07233 hypothetical protein; Provisional
Probab=83.52 E-value=3 Score=46.68 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCC
Q psy9575 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185 (786)
Q Consensus 123 g~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG 185 (786)
-..+.+.|.+.+++.|++|+.+++|+++..++ +++.++.. +++ .+.|+.||+|+..
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~~----~~~--~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVEV----DGE--EEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEEe----CCc--eEECCEEEECCCH
Confidence 35688999999999999999999999999876 66665542 343 5889999999985
No 490
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=83.44 E-value=6.5 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.1
Q ss_pred ChHhhhcHhCCCC-EEEEEecCCCCC
Q psy9575 1 MRASLQLAQEGLN-VAILSKVFPTRS 25 (786)
Q Consensus 1 L~AA~~aa~~G~~-V~vvek~~~~~g 25 (786)
|++|++|.++|.+ ++|+||+...+|
T Consensus 21 laaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 21 LAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred HHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 5789999999988 999999876543
No 491
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=83.28 E-value=3.7 Score=49.79 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcCCCcEEEEEeCeEEEcCCCCCc
Q psy9575 124 HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188 (786)
Q Consensus 124 ~~i~~~L~~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~~g~~~~i~AkaVVlATGG~~~ 188 (786)
..+.+.|.+++.+.||+|++++.++++.. ..+.+|.||.|+|-.+.
T Consensus 97 ~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------------~~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 97 KRLLNILQARCEELGVKLVFETEVPDDQA-------------------LAADADLVIASDGLNSR 142 (765)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccCchhh-------------------hhcCCCEEEEcCCCCHH
Confidence 57889999999999999999987655410 01468999999997764
No 492
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=82.70 E-value=0.54 Score=45.72 Aligned_cols=18 Identities=44% Similarity=1.060 Sum_probs=15.8
Q ss_pred hhhCcccCcccCCCCCcc
Q psy9575 694 LYECILCGCCSTACPSFW 711 (786)
Q Consensus 694 ~~~CI~Cg~C~~~CP~~~ 711 (786)
...|+.||.|+.+||...
T Consensus 72 ~~~C~~Cg~C~~~CPt~A 89 (181)
T PRK08222 72 LGRCIYCGRCEEVCPTRA 89 (181)
T ss_pred cCcCcCCCCcccccCcCe
Confidence 569999999999999853
No 493
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=82.49 E-value=0.75 Score=44.23 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=25.3
Q ss_pred cccccccccchhhCCCCC----ChHHHHHHHHHHHH
Q psy9575 751 LFRCRSIMNCVDTCPKGL----NPNRSINKIKELMI 782 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi----~~~~~i~~lr~~~~ 782 (786)
+..|.+||.|+..||++. ++-++|..+|.-++
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~ 73 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLV 73 (195)
T ss_pred HhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccH
Confidence 456999999999999876 47788887775443
No 494
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.32 E-value=3.7 Score=46.42 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=40.9
Q ss_pred HHHhcCCceEEeceEEEeeeecCCCCEEEEEEEEc------CC---------CcEEEEEeCeEEEcCCCC
Q psy9575 132 QRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEM------ET---------GNIMILESKITILATGGG 186 (786)
Q Consensus 132 ~~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~------~~---------g~~~~i~AkaVVlATGG~ 186 (786)
+.+++.||+|++++.++++..+++|+|.++..... .+ |+...+.++.||+|+|-.
T Consensus 317 ~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 317 AHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred HHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence 45667899999999999998754478888876421 12 334579999999999943
No 495
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=82.16 E-value=0.79 Score=50.70 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=24.1
Q ss_pred cccccccchhhCCCCCChHHHHHHHHH
Q psy9575 753 RCRSIMNCVDTCPKGLNPNRSINKIKE 779 (786)
Q Consensus 753 ~C~~Cg~C~~vCP~gi~~~~~i~~lr~ 779 (786)
.|..|+.|+++||+++.+.++-+..+.
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a~~ 392 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFAKG 392 (529)
T ss_pred ccccHHHHHHhCccccCHHHhhHHhhh
Confidence 799999999999999999988776654
No 496
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=82.05 E-value=0.89 Score=46.80 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=34.2
Q ss_pred EEcCCCCh--hHHHHHHHchhccCCCcccccCCCCCcccceEEEeCCcccccccc
Q psy9575 577 VNLSSNDK--MLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629 (786)
Q Consensus 577 v~~~~~~~--tiL~al~~~~~~~~~~l~~~~~Cr~g~Cg~C~V~vnG~~~laC~t 629 (786)
+-.+++ + .+.+.|++.|+..-=+|.-+-.|..|+||+|+|+..|..++.|..
T Consensus 185 iCGP~~-m~~~~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~~~~~~~~C~~ 238 (248)
T cd06219 185 AIGPPI-MMKAVSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTVGGETKFACVD 238 (248)
T ss_pred EECCHH-HHHHHHHHHHHcCCCEEEEecccccCccceeeeEEEEeCCCEEEEeCc
Confidence 445544 2 144555555554333455567899999999999998755678853
No 497
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=82.04 E-value=0.083 Score=40.44 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=13.2
Q ss_pred ccccccccchhhCCCCCChH
Q psy9575 752 FRCRSIMNCVDTCPKGLNPN 771 (786)
Q Consensus 752 ~~C~~Cg~C~~vCP~gi~~~ 771 (786)
..|+.||.|..+||+.....
T Consensus 3 ~~Ci~Cg~C~~~CP~~~~~~ 22 (57)
T PF13183_consen 3 SKCIRCGACTSVCPVYRNTG 22 (57)
T ss_dssp HC--S-SHHHHCSHHHHHHH
T ss_pred HHccCccChHHHChhhhccc
Confidence 57999999999999555544
No 498
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=82.00 E-value=0.7 Score=54.44 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=23.5
Q ss_pred cccccccccchhhCCCCCChHHHHHHHH
Q psy9575 751 LFRCRSIMNCVDTCPKGLNPNRSINKIK 778 (786)
Q Consensus 751 ~~~C~~Cg~C~~vCP~gi~~~~~i~~lr 778 (786)
...|+.||.|+.+||.++-+..+.+.++
T Consensus 369 e~~CI~CG~Cv~aCP~~llP~~l~~~~~ 396 (695)
T PRK05035 369 EQPCIRCGACADACPASLLPQQLYWFAK 396 (695)
T ss_pred hhhcCCcccHHHHCCccchhhhHHHhhh
Confidence 3679999999999999999887766544
No 499
>PRK12831 putative oxidoreductase; Provisional
Probab=81.74 E-value=3.5 Score=46.72 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=41.1
Q ss_pred HHhcCCceEEeceEEEeeeecCCCCEEEEEEEEcC---------------CCcEEEEEeCeEEEcCCCCC
Q psy9575 133 RNLHAKTNFFIEWMAIDLISDSEGDILGVVALEME---------------TGNIMILESKITILATGGGG 187 (786)
Q Consensus 133 ~~~~~Gv~i~~~~~v~~L~~~~~g~v~G~~~~~~~---------------~g~~~~i~AkaVVlATGG~~ 187 (786)
.+++.||+|++.+.+++++.+++|+|.|+.+..+. +|+...+.++.||+|+|-..
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred HHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCC
Confidence 45567999999999999987544789888764221 34445799999999999543
No 500
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=81.36 E-value=1.8 Score=44.70 Aligned_cols=44 Identities=30% Similarity=0.528 Sum_probs=35.9
Q ss_pred cccCceeeecccCCccCCCCCccChhhhHHHHHHHHHHHHHHHHHh
Q psy9575 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLE 402 (786)
Q Consensus 357 t~IpGLyAaGe~a~gg~~Ga~rlgg~~l~~a~v~G~~Ag~~aa~~~ 402 (786)
...||||++|=.+ ..+||.+|+|- -++.-+.+|+.|++.+.+.+
T Consensus 210 ~~~~g~~~~gm~~-~~~~~~~rmgp-~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 210 EVVPNLYVAGMAV-AAVHGLPRMGP-IFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cccCCEEEechhh-hhhcCCCCcCc-hHHHHHHhhHHHHHHHHHHh
Confidence 5799999999988 59999999874 35566777999998887654
Done!