RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9575
(786 letters)
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 1034 bits (2676), Expect = 0.0
Identities = 413/563 (73%), Positives = 490/563 (87%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
MRASLQLA+ GL+VA+LSKVFPTRSHTVAAQGGI ASLGNMS+DNWH+H +DTIKGSD+L
Sbjct: 25 MRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWL 84
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
GDQDAIEFMC+EAP VVYELEHFGMPFDRN +GTIYQRPFGGH++N+GEKP+ RACA AD
Sbjct: 85 GDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAAD 144
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
RTGHALLHTLYQ+N+ AKT FF+EWMA+DLI D++GD+LGV ALEMETG++ ILE+K T+
Sbjct: 145 RTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTL 204
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240
ATGG GRI+AASTNAFINTGDGLGMAARAG+PL+DMEFWQFHPTGVAGAGVLITEGVRG
Sbjct: 205 FATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHPTGVAGAGVLITEGVRG 264
Query: 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINS 300
EGGIL N +GERFMERYAP LKDLAPRDFVSR+MDQEIKEGRGCGPN DHV+LDL H+ +
Sbjct: 265 EGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNGDHVLLDLTHLGA 324
Query: 301 ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVN 360
ETI+ RLPSI EI KFANV+ +KEPIPV+PTIHYQMGGIPTNI+GQV+ + D+ + VN
Sbjct: 325 ETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHKEPVN 384
Query: 361 GLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIII 420
G YAIGEC+CVSVHGANRLGTNSLLDL+VFGR+AGNHI+ K+ +K LP ++ D +
Sbjct: 385 GFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPADAADFSL 444
Query: 421 DRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKD 480
RL+KL+ + E Q VANDIR TMQ + GVFRT L+ G ++I+ L ER + I KD
Sbjct: 445 ARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEGVEQILALAERVENIHLKD 504
Query: 481 KSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYS 540
KSK+FNTAR+EALE+ NLIE A+AT+ SA +RKESRGAHAH+D+++RDD NWLKH++WYS
Sbjct: 505 KSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEHRDDENWLKHTLWYS 564
Query: 541 NGNRIEFKPVNLKPLTVKTVHPK 563
GNR+++KPV +KPLTV++V PK
Sbjct: 565 EGNRLDYKPVQMKPLTVESVPPK 587
>gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein
subunit, E. coli/mitochondrial subgroup. Succinate
dehydrogenase and fumarate reductase are homologous
enzymes reversible in principle but favored under
different circumstances. This model represents a
narrowly defined clade of the succinate dehydrogenase
flavoprotein subunit as found in mitochondria, in
Rickettsia, in E. coli and other Proteobacteria, and in
a few other lineages. However, This model excludes all
known fumarate reductases. It also excludes putative
succinate dehydrogenases that appear to diverged before
the split between E. coli succinate dehydrogenase and
fumarate reductase [Energy metabolism, TCA cycle].
Length = 565
Score = 867 bits (2241), Expect = 0.0
Identities = 337/563 (59%), Positives = 418/563 (74%), Gaps = 6/563 (1%)
Query: 7 LAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAI 66
LA+ G+N A ++K+FPTRSHTVAAQGGISA+LGNM +DNW WHM+DT+KGSD+LGDQDAI
Sbjct: 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAI 60
Query: 67 EFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE-KPIARACAVADRTGHA 125
E+MCK+AP+ V ELEH GMPF R ++G IYQRPFGGH+ +FG+ RACA ADRTGHA
Sbjct: 61 EYMCKQAPEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHA 120
Query: 126 LLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGG 185
+LHTLYQ+NL A T+FF E+ A+DL+ + +G+ GV+A +ETG I +K +LATGG
Sbjct: 121 ILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATGG 179
Query: 186 GGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGIL 245
GRI+ ++TNA TGDG GM RAGLPL+DMEF QFHPTG+AGAG LITEG RGEGGIL
Sbjct: 180 YGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLITEGCRGEGGIL 239
Query: 246 INSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIIN 305
IN+NGERFMERYAP KDLA RD VSR+M EI+EGRG GPNKDHV LDL H+ E +
Sbjct: 240 INANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEG 299
Query: 306 RLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAI 365
RLP I E FA V+ +K+PIPV+PT+HY MGGIPTN +GQV+ N N++IV GLYA
Sbjct: 300 RLPGISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAA 359
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSK 425
GE ACVSVHGANRLGTNSLLDL+VFGR+AG K +P N+ + + RL K
Sbjct: 360 GEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAGEESVMRLDK 419
Query: 426 LENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIF 485
L G E V ++ +++++MQN+ GVFRT ++++ G +KI L ER K + DKSK++
Sbjct: 420 LRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSKVW 479
Query: 486 NTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGN-- 543
NT +EALEL NL+E A+AT SA +RKESRGAHA DF RDD NWLKH++ Y + N
Sbjct: 480 NTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLSYVDINTG 539
Query: 544 --RIEFKPVNLKPLTVKTVHPKK 564
+ +KPV KPLTV PKK
Sbjct: 540 KVLLSYKPVIFKPLTVADFEPKK 562
>gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 865 bits (2238), Expect = 0.0
Identities = 308/571 (53%), Positives = 400/571 (70%), Gaps = 7/571 (1%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+RA+L +A+ GL A ++KVFPTRSHTVAAQGGISASLGNM +D+W WHM+DT+KGSD+L
Sbjct: 25 LRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWL 84
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE-KPIARACAVA 119
GDQDAIE+MC+EAP VYELEH+G+PF R + G IYQRPFGG ++N+G+ P R CA A
Sbjct: 85 GDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAA 144
Query: 120 DRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKIT 179
DRTGHA+LHTLYQ++L FFIE+ A+DLI D G GVVA ++ G + + +
Sbjct: 145 DRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMV 204
Query: 180 ILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239
+LATGG GR + ++T+A TGDG GM RAGLPL+DMEF QFHPTG+ GAG LITEG R
Sbjct: 205 VLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFVQFHPTGIYGAGCLITEGAR 264
Query: 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHIN 299
GEGG L NS GERFMERYAP KDLA RD VSRAM EI+EGRG G KDH+ L L H++
Sbjct: 265 GEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKKDHIFLHLDHLD 324
Query: 300 SETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDN-NKI 358
E + RLP I E FA V+ KEPIPV+PT+HY MGGIPTN +G+V+ DN + +
Sbjct: 325 PEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAV 384
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
V GL A+GE ACVSVHGANRLG+NSL+DL+VFGR+A + + LP ++ D
Sbjct: 385 VPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPPLPKDACDK 444
Query: 419 IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478
+DR +L + G + +++TMQ VFRT ++++ G +KI + I
Sbjct: 445 ALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKV 504
Query: 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSI- 537
D+S I+N+ +E LELDNL+ A T+ SA +RKESRGAHA DF +RDD NW+KH++
Sbjct: 505 TDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAREDFPDRDDENWMKHTLA 564
Query: 538 WYSNGN--RIEFKPVNLKPLT--VKTVHPKK 564
W + +++++PV+L LT V+ + PKK
Sbjct: 565 WVDDKGKVKLDYRPVHLYTLTDDVQYIPPKK 595
>gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 570
Score = 800 bits (2068), Expect = 0.0
Identities = 320/567 (56%), Positives = 414/567 (73%), Gaps = 3/567 (0%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMS-KDNWHWHMFDTIKGSDY 59
MRA+LQLAQ G A+++KVFPTRSHTV+AQGGI+ ++ + D+W WHM+DT+KGSDY
Sbjct: 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDY 60
Query: 60 LGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE-KPIARACAV 118
+GDQDAIE+MC P+ V+ELEH G+PF R + G IYQRPFGG S +FG+ AR CA
Sbjct: 61 IGDQDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAA 120
Query: 119 ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKI 178
ADRTGHALLHTLYQ NL T F EW A+DL+ + +G ++GV+A+ +ETG + ++SK
Sbjct: 121 ADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKA 180
Query: 179 TILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGV 238
T+LATGG GRI+A++TNA INTGDG+GMA RAG+P++D+E WQFHPTG+AGAGVL+TEG
Sbjct: 181 TVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLVTEGC 240
Query: 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHI 298
RGEGG LIN +GERFMERYAP KDLA RD V+R+M +EI G GCGPNKDHV+L L H+
Sbjct: 241 RGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHL 300
Query: 299 NSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPN-NDNNK 357
E + +RLP I E+ FA+V+ + PIPV+PT HY MGG+ TNI+GQ I + N N++
Sbjct: 301 GEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQ 360
Query: 358 IVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSID 417
I+ GL+A+GE ACVSVHGANRLG NSLLDL+VFGR+AG H+ + I + + ID
Sbjct: 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKEGIEYRDASESDID 420
Query: 418 IIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477
+ RL+KL G E V ++ +++ MQNY GVFRT + M+ G ++ L ER +
Sbjct: 421 AALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANVK 480
Query: 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSI 537
DKS+ FNTARIEALEL NL+E A+AT +A RKESRGAHA DF++RDD NWL H++
Sbjct: 481 INDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTL 540
Query: 538 WYSNGNRIEFKPVNLKPLTVKTVHPKK 564
++ R+ + VN P TV PK
Sbjct: 541 YFPGEKRVGKRAVNFAPKTVPAFEPKV 567
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 790 bits (2041), Expect = 0.0
Identities = 308/566 (54%), Positives = 399/566 (70%), Gaps = 2/566 (0%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
MRA+LQ++Q G + A+LSKVFPTRSHTV+AQGGI+ +LGN +DNW WHM+DT+KGSDY+
Sbjct: 20 MRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
GDQDAIE+MCK P+ + ELEH G+PF R +G IYQRPFGG S NFG + AR A AD
Sbjct: 80 GDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD 139
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
RTGHALLHTLYQ+NL T F EW A+DL+ + +G ++G A+ +ETG ++ +++ T+
Sbjct: 140 RTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATV 199
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240
LATGG GRI+ ++TNA INTGDG+GMA RAG+P++DME WQFHPTG+AGAGVL+TEG RG
Sbjct: 200 LATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRG 259
Query: 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVMLDLRHIN 299
EGG L+N +GERFMERYAP KDLA RD V+R++ EI+EGRGC GP H L L H+
Sbjct: 260 EGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLG 319
Query: 300 SETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNND-NNKI 358
E + +RLP ILE+ FA+V+ +KEPIPVIPT HY MGGIPT + GQ + N + +
Sbjct: 320 KEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVV 379
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
V GL+A+GE ACVSVHGANRLG NSLLDL+VFGR+AG H+ ++ + + I+
Sbjct: 380 VPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLAEQGALRDASESDIEA 439
Query: 419 IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478
+ RL++ NN+ E + +++ MQN VFR M G +++ ++ ER K
Sbjct: 440 SLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKGLEELKVIRERLKNARL 499
Query: 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIW 538
D S FNT RIE LELDNL+ETA AT SA R ESRGAH+ DF +RDD NWL HS++
Sbjct: 500 DDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLY 559
Query: 539 YSNGNRIEFKPVNLKPLTVKTVHPKK 564
+ + VN++P PK
Sbjct: 560 LPETESMTRRSVNMEPKLRPAFPPKI 585
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 790 bits (2041), Expect = 0.0
Identities = 314/573 (54%), Positives = 402/573 (70%), Gaps = 9/573 (1%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+RA+L L + G A +SK+FPTRSHTVAAQGGI+A+LGNM++D+W WH +DT+KGSD+L
Sbjct: 42 LRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWL 101
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIA-RACAVA 119
GDQDAI++MC+EAP+ V ELE +G+PF R K+G IYQR FGG S FG+ A R A A
Sbjct: 102 GDQDAIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAA 161
Query: 120 DRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKIT 179
DRTGHA+LHTLY ++L NFFIE+ A+DLI D +G+ GV+A+ ME G+I + T
Sbjct: 162 DRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYT 221
Query: 180 ILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239
++ATGG GR + + T+A TGDG M +RAGLPL+D+EF QFHPTG+ GAG LITEG R
Sbjct: 222 VIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFVQFHPTGIYGAGCLITEGCR 281
Query: 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHIN 299
GEGGIL NS GERFMERYAP KDLA RD VSRAM EI EGRGCGPNKDH+ LDL H+
Sbjct: 282 GEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLDLTHLP 341
Query: 300 SETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIP-NNDNNKI 358
ET+ RLP I E FA V+ KEPIPV+PT+HY MGGIPTN QV+ N D++KI
Sbjct: 342 PETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKI 401
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
V GL A GE AC SVHGANRLG NSLLD++VFGR+A N ++ + LP ++ +
Sbjct: 402 VPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEILKPGRPQPDLPKDAGEA 461
Query: 419 IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478
I RL K+ +NKG S + +++TMQ + VFR + ++ G +KI + K +
Sbjct: 462 SIARLDKIRHNKGDISTAQIRKRMQRTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKI 521
Query: 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSI- 537
KDKS ++NT IE LEL+NL+ AK TI SA +RKESRGAHA +DF RDD NW+KH++
Sbjct: 522 KDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARDDFPERDDKNWMKHTLS 581
Query: 538 WYSNGN----RIEFKPVNLKPLT--VKTVHPKK 564
+ + R+ ++PV PL ++TV P K
Sbjct: 582 YIRDVKKGKVRLTYRPVITTPLDNEMETVPPAK 614
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 767 bits (1983), Expect = 0.0
Identities = 291/550 (52%), Positives = 375/550 (68%), Gaps = 21/550 (3%)
Query: 13 NVAILSKVFPTRSHTVAAQGGISASLGNMSK-DNWHWHMFDTIKGSDYLGDQDAIEFMCK 71
N A++SKV+PTRSHTVAAQGG++A+LGN+ D+W WH +DT+KGSDYL DQDA+E+MC+
Sbjct: 1 NTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEYMCQ 60
Query: 72 EAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLY 131
EAPK + ELEH+G+PF R +G I QRPFGGHS + R C AD+TGHALLHTLY
Sbjct: 61 EAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKD-------RTCYAADKTGHALLHTLY 113
Query: 132 QRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWA 191
++ L +FF E+ A+DLI D +G + GVVA +++TG I+ +K +LATGG GRI+
Sbjct: 114 EQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 172
Query: 192 ASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGE 251
+TNA INTGDG+ MA RAG+PL+DMEF QFHPTG+ +G+LITEG RGEGG L+N NGE
Sbjct: 173 TTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGILITEGCRGEGGYLVNKNGE 232
Query: 252 RFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINSETIINRLPSI 310
RFMERYAP +LAPRD VSRAM EI+EGRG G P D+V LDLRH+ E I RLP I
Sbjct: 233 RFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEKIEERLPQI 292
Query: 311 LEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECAC 370
E+ FA V+ +KEPIPV PT HY MGGIPT++ + IV GL+A GECAC
Sbjct: 293 RELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDVICE-------TRSIVKGLFAAGECAC 345
Query: 371 VSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK-KIHNKKLPINSIDIIIDRLSKLENN 429
VSVHGANRLG NSLL+L+VFGR AG K + ++ + L
Sbjct: 346 VSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVER 405
Query: 430 KGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTAR 489
G E V + ++ TM + G+FRT++L+K +I L ER K + DKSK+FNT
Sbjct: 406 NGGERVAKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRERYKNVRINDKSKVFNTDL 465
Query: 490 IEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGN---RIE 546
+EALEL N+++ A+ + A++RKESRGAHA D+ RDD NWLKH++ Y + R+E
Sbjct: 466 LEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLAYYDNPGTPRLE 525
Query: 547 FKPVNLKPLT 556
+KPV +
Sbjct: 526 YKPVTITKYE 535
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 750 bits (1938), Expect = 0.0
Identities = 279/562 (49%), Positives = 373/562 (66%), Gaps = 14/562 (2%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
MRA+++ A+L+K++PTRSHT AAQGG+ A+L N+ +DNW WH FDT+KG DYL
Sbjct: 18 MRAAIEAGP-RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYL 76
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
DQDA E M KEA V +LE G+PF+R G I QR FGGH+ + G+ P+ RAC AD
Sbjct: 77 VDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAAD 136
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLI---SDSEGDILGVVALEMETGNIMILESK 177
RTGH +L TLYQ + FF E+ +DL+ + S GVVA E+ TG I + +K
Sbjct: 137 RTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK 196
Query: 178 ITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237
+ ATGG GR++ ++NA TGDG+G+ R GLPLEDMEF QFHPTG+AG G+LI+E
Sbjct: 197 AVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQFHPTGLAGLGILISEA 256
Query: 238 VRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRH 297
RGEGGIL N+ GERFMERYAP +KDLAPRD V+R+M E++EGRG GPNKD+V LDL H
Sbjct: 257 ARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTH 316
Query: 298 INSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNK 357
+ E + +LP I E + V+ +KEP+PV PT HY MGGIPT + G+V+ DN
Sbjct: 317 LGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVL---RDNTT 373
Query: 358 IVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSID 417
+V GLYA GECACVSVHGANRLGTNSLLD+ VFGR AG + + LP N
Sbjct: 374 VVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIA-AAEYARGADFVDLPENPEA 432
Query: 418 IIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477
++++ + L + G+E V + +++++M N VFRT++ +K I L ER K I+
Sbjct: 433 MVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQALTDIHALKERYKRIT 492
Query: 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSI 537
+DK K FNT +EA+EL L++ A+ T+ A++RKESRG HA D+ NRDD+N++KH++
Sbjct: 493 VQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRDDVNYMKHTM 552
Query: 538 WYSNGN------RIEFKPVNLK 553
Y G R+++KPV
Sbjct: 553 AYKEGTDLLSDIRLDYKPVVQT 574
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 713 bits (1843), Expect = 0.0
Identities = 302/569 (53%), Positives = 394/569 (69%), Gaps = 6/569 (1%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+RA++ L++ G N A ++K+FPTRSHTVAAQGGI+A+LGNM++D+W WHM+DT+KGSD+L
Sbjct: 63 LRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWL 122
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIA-RACAVA 119
GDQDAI++MC+EAPK V ELE++G+PF R ++G IYQR FGG S +FG+ A R A
Sbjct: 123 GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAA 182
Query: 120 DRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKIT 179
DRTGHA+LHTLY + + T FF+E+ A+DLI DS+G GV+AL ME G + + T
Sbjct: 183 DRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHST 242
Query: 180 ILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239
ILATGG GR + ++T+A TGDG M ARAGLPL+D+EF QFHPTG+ GAG LITEG R
Sbjct: 243 ILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSR 302
Query: 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHIN 299
GEGGIL NS GERFMERYAP KDLA RD VSR+M EI+EGRG GP KDH+ L L H+
Sbjct: 303 GEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLP 362
Query: 300 SETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDN-NKI 358
E + RLP I E FA V+ KEPIPV+PT+HY MGGIPTN +G+V+ D+ + +
Sbjct: 363 PEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAV 422
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
V GL A GE AC SVHGANRLG NSLLD++VFGR+ N + + K LP ++ +
Sbjct: 423 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAKPGEKQKPLPKDAGEK 482
Query: 419 IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478
I L KL N GS + ++++ MQN VFRT + ++ G K I + +
Sbjct: 483 TIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKV 542
Query: 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSI- 537
D+S I+N+ IE LEL+NL+ A T+ SA +RKESRGAHA DF RDD NW+KH++
Sbjct: 543 TDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLG 602
Query: 538 -WYSNGNRIEFKPVNLKPLT--VKTVHPK 563
W R++++PV++ L V+T PK
Sbjct: 603 YWEEGKVRLDYRPVHMNTLDDEVETFPPK 631
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 657 bits (1697), Expect = 0.0
Identities = 276/562 (49%), Positives = 368/562 (65%), Gaps = 27/562 (4%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK---DNWHWHMFDTIKGS 57
+RA+++ A+ GL VA+LSK P R HTVAAQGGI+A+LGN D+ H +DT+KG
Sbjct: 19 LRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGG 78
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
D LGDQDA+E EAP+ V ELE +G+PF R ++G IYQR FGGHS R C
Sbjct: 79 DGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHS-------KPRTCF 131
Query: 118 VADRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILES 176
AD+TGH LLHTLY++ L + F E+ +DL+ D G + GVVA ++ TG + + +
Sbjct: 132 AADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRA 191
Query: 177 KITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITE 236
K ILATGG GR++ +TNA I TGDG+ MA RAG PL DMEF QFHPTG+ G+G+LITE
Sbjct: 192 KAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPTGLVGSGILITE 251
Query: 237 GVRGEGGILINSNGERFMER--YAPILKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVML 293
VRGEGGIL+N +GERFMER YAP K+LAPRD VSRA+ EI+EGRG GP D+V L
Sbjct: 252 AVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYL 311
Query: 294 DLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNN 353
DLRH+ E + RLP I E+ KFA ++ +KEPIPV PT+HY MGGIPTN G+V
Sbjct: 312 DLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTN-TGRVE---- 366
Query: 354 DNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS-LELKKIHNKKLP 412
+ GL+A GE A VS HGANRLG NSLLDL+VFGR AG + K P
Sbjct: 367 ---TKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP---P 420
Query: 413 INSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDER 472
++++ +R L G E+ + ++++ M + G+FR ++ ++ +K+ L ER
Sbjct: 421 ASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIFRNEEGLEKALEKLKELRER 480
Query: 473 RKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINW 532
K I DKS++FNT +ALEL N+++ A+A +SA++R ESRGAH D+ RDD NW
Sbjct: 481 LKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENW 540
Query: 533 LKHSIWYSNGN-RIEFKPVNLK 553
LKH++ + R+E++PV +
Sbjct: 541 LKHTLASYDKKPRLEYEPVKIT 562
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 604 bits (1558), Expect = 0.0
Identities = 252/564 (44%), Positives = 353/564 (62%), Gaps = 28/564 (4%)
Query: 2 RASLQLAQEG--LNVAILSKVFPTRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSD 58
RA+L++ + L+VA+++K P RSH+VAAQGGI+ASL N+ +D+W H FDT+KGSD
Sbjct: 17 RAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSD 76
Query: 59 YLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
YL DQDA+ + +EAP V+ +LEH G+ F R +G I QR FGGHS N R C
Sbjct: 77 YLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHN-------RTCYA 129
Query: 119 ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKI 178
AD+TGHA+LH L + EW + LI + + GVV + G + ++ +K
Sbjct: 130 ADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKA 188
Query: 179 TILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGV 238
+ ATGG GR++ ++N + +TGDGL M A AGLPLEDMEF QFHPTG+ GVLI+E V
Sbjct: 189 VMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHPTGLYPVGVLISEAV 248
Query: 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPN----KDHVMLD 294
RGEG LINS G+RFM YAP +LAPRD SRA+ EI+ GRG P+ V LD
Sbjct: 249 RGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPFVYLD 308
Query: 295 LRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNND 354
LRH+ E I++R+P E ++ V+A+ EP+PV PT+HY MGGIP N G+V
Sbjct: 309 LRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRV---RRS 365
Query: 355 NNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPIN 414
+ +V G +A GECACVSVHGANRLG+NSLL+ +V+GR G I + + +KLP
Sbjct: 366 ADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAI----AEYVQGRKLPEV 421
Query: 415 SIDIIID----RLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILD 470
+ R+ L + G+ + + + M ++CGVFRT+++M+ G +KI L
Sbjct: 422 DEQRYLKEAKQRIQALLDQSGTYRINQLRQQFQDCMTDHCGVFRTEEIMQEGLEKIQQLK 481
Query: 471 ERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDI 530
++ + I DK K +NT IEALEL +L+ + ++SA++R+ESRGAH+ D+ RDD
Sbjct: 482 QQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQ 541
Query: 531 NWLKHSIWY--SNGNRIEFKPVNL 552
N+LKH++ Y G I++ PV +
Sbjct: 542 NFLKHTLAYYSPAGIDIQYMPVVI 565
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 585 bits (1510), Expect = 0.0
Identities = 248/566 (43%), Positives = 340/566 (60%), Gaps = 34/566 (6%)
Query: 1 MRASLQLAQEG---LNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGS 57
+RA++ A+ L+VA++SK P RSH+V+A+GG +A L D++ H +DT+KGS
Sbjct: 18 LRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGS 77
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACA 117
D+L DQDA+E +EAP+ + L+H+G+P+ R +G I QRPFGG S R
Sbjct: 78 DFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMS-------FPRTTF 130
Query: 118 VADRTGHALLHTLYQR-----NLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIM 172
AD+TG ++HTLY R N+H F+ E LI + G GV A++++ G
Sbjct: 131 AADKTGFYIMHTLYSRALRFDNIH----FYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFK 185
Query: 173 ILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV 232
+ ++K I+ATGG GR++ +T A TGDGL +A RAG+PL+DMEF QFHPTG+ +G+
Sbjct: 186 VFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPTGLVPSGI 245
Query: 233 LITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKD--H 290
LITE RGEGG LIN GERFM+RYAP +LAPRD VSRA+ EI EGRG +
Sbjct: 246 LITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCY 305
Query: 291 VMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVII 350
V LDLRH+ E I RLP I EI K+A ++ + EPIPV P HY MGGI T++YG+V+
Sbjct: 306 VGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVL- 364
Query: 351 PNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAG----NHILSLELKKI 406
+ + V GL+A GE A VSVHGANRLG+NS + LV+GR AG + L
Sbjct: 365 --TADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALKRPAPSS 422
Query: 407 HNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKI 466
+KL I D+L K E E + ++ M G+FR + + KKI
Sbjct: 423 PVEKLAEKEEKRIFDKLLKKEGG---EPSYEIRRELNDIMDKNFGIFRDESGLAEALKKI 479
Query: 467 MILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKN 526
L ER K + +DKS+I+NT +ALELD +++ A+ A+ R ESRGAH D+
Sbjct: 480 KKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPK 539
Query: 527 RDDINWLKHSIWY--SNGNRIEFKPV 550
RDD NWLKH++ Y G ++ + PV
Sbjct: 540 RDDENWLKHTLAYYTGGGPKVTYTPV 565
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 510 bits (1315), Expect = e-173
Identities = 221/571 (38%), Positives = 336/571 (58%), Gaps = 40/571 (7%)
Query: 1 MRASLQLAQE--GLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSD 58
+RA++ A+ L +A++SKV+P RSHTVAA+GG +A D++ +H DT+ G D
Sbjct: 17 LRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ--DHDSFDYHFHDTVAGGD 74
Query: 59 YLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
+L +QD +E+ P + +LE +G P+ R +G++ R FGG I R
Sbjct: 75 WLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMK-------IERTWFA 127
Query: 119 ADRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
AD+TG +LHTL+Q +L + + F E +D++ D +G + G+VA+ M G ++ + +
Sbjct: 128 ADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN 186
Query: 178 ITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237
++ATGG GR++ +TN I TGDG+GMA R G+PL DMEF Q+HPTG+ G+G+L+TEG
Sbjct: 187 AVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLPGSGILMTEG 246
Query: 238 VRGEGGILINSNGERFMERYA-----PILK------DLAPRDFVSRAMDQEIKEGRGC-G 285
RGEGGIL+N +G R+++ Y P+ + +L PRD VS+A E ++G
Sbjct: 247 CRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIST 306
Query: 286 PNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIY 345
P D V LDLRH+ + + RLP I E+ + V+ +KEPIPV PT HY MGGI T+
Sbjct: 307 PRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQN 366
Query: 346 GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405
+ I GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG
Sbjct: 367 CETRIK---------GLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAATA 417
Query: 406 IHNKKLPINS-IDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464
+ +++ + RL L N +G E+ + +++ +M+ CG++RT +LM+
Sbjct: 418 GPGNEAALDAQAADVEQRLKALVNQEGGENWAKIRDEMGLSMEEGCGIYRTPELMQKTID 477
Query: 465 KIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND- 523
K+ L ER K + D S +FNT + +EL ++ A+ SA++RKESRGAH D
Sbjct: 478 KLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDE 537
Query: 524 -FKNRDDINWLKHSIWYSNGN---RIEFKPV 550
RDD+N+LKH++ + N + RIE+ V
Sbjct: 538 GCTERDDVNFLKHTLAFYNADGTPRIEYSDV 568
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 506 bits (1305), Expect = e-172
Identities = 243/558 (43%), Positives = 337/558 (60%), Gaps = 29/558 (5%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASL-GNMS-KDNWHWHMFDTIKGSDYL 60
++ ++A G VA++SKVFPTRSH+ AA+GGI+A + GN DN + +DT+KG DYL
Sbjct: 20 SAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYL 79
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
DQDA E + ++ ++V LE +G F+R +G + R FGG + R V D
Sbjct: 80 VDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQT-------YPRTRFVGD 132
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
+TG ALLHTL++R +F+ EW ++DL++D ++G+VA++M+T ++K +
Sbjct: 133 KTGMALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVV 191
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240
LATGG G ++ +TN++INTGDG G+A RAG L+D EF QFHPT + + VLI+E RG
Sbjct: 192 LATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTALYPSDVLISEAARG 251
Query: 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINS 300
EGGIL N GERFM +YAP DLAPRD VSRA+ EI+EGRG P +V LDL H+
Sbjct: 252 EGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGF-PG-GYVGLDLTHLGE 309
Query: 301 ETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVN 360
E I RL +E FA V+A EPIPV P HY MGGI +I G+ N +
Sbjct: 310 EYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGR--------NPDIV 361
Query: 361 GLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI-- 418
GL++ GE ACVSVHGANRLG+NSLLD LVFG+ G ++ LK P ++ +
Sbjct: 362 GLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQF-LKSNPGN--PTSNYEKEA 418
Query: 419 --IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYI 476
++D K ++ + +R TM +Y G++R + + N +I L +
Sbjct: 419 EKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLLNAMSEINKLRGMISNM 478
Query: 477 SFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHS 536
DKSK++NT ALEL N+++ A SA+ RKESRGAH D+ +RDD NWLKH+
Sbjct: 479 YVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHT 538
Query: 537 IWYSNGN--RIEFKPVNL 552
I Y GN + FKPV +
Sbjct: 539 IAYLRGNTVEVTFKPVKI 556
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 482 bits (1242), Expect = e-162
Identities = 230/585 (39%), Positives = 340/585 (58%), Gaps = 45/585 (7%)
Query: 1 MRASLQLAQEG--LNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSD 58
+RA++ A+ L+VA++SKV+P RSHTVAA+GG +A G+ D+ H DT+ G D
Sbjct: 16 LRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGD--DDSLDEHFHDTVSGGD 73
Query: 59 YLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
+L +QD +E+ EAPK + +LEH+G P+ R +G + R FGG R
Sbjct: 74 WLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMK-------KERTWFA 126
Query: 119 ADRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
AD+TG +LHTL+Q +L + + + EW DL+ D +G + G+VA+EM G ++ + +
Sbjct: 127 ADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILAD 185
Query: 178 ITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237
+LATGG GR++ +TN I TGDG+ MA R G+PL DMEF Q+HPTG+ G G+L+TEG
Sbjct: 186 AVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPGTGILMTEG 245
Query: 238 VRGEGGILINSNGERFMERYA---------PILK--DLAPRDFVSRAMDQEIKEGRGCG- 285
RGEGGIL+N +G R+++ Y P K +L PRD VS+A E +G
Sbjct: 246 CRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDT 305
Query: 286 PNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIY 345
P D V LDLRH+ + + RLP I E+ + +V+ +KEPIPV PT+HY MGGI T+I
Sbjct: 306 PYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDIN 365
Query: 346 GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELK- 404
+ I GL+A+GECA V +HGANRLG+NSL +L+VFGR AG +
Sbjct: 366 CETRIK---------GLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAARH 416
Query: 405 KIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464
+ N+ + RL +L + G E+ + ++ TM++ CG++R LM+
Sbjct: 417 QKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATMESGCGIYRDGPLMQKTID 476
Query: 465 KIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDF 524
K+ L ER K D S++FNT + +EL ++ A+A + SA+ RKESRGAH D
Sbjct: 477 KLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDE 536
Query: 525 K--NRDDINWLKHSIWYSNGN---RIEFKPVNLKPLTVKTVHPKK 564
RDD+++LKH++ + + R+ + PV + P +
Sbjct: 537 GCTERDDVHFLKHTLAFRESDGTLRVGYSPV-----KITRWPPGE 576
>gnl|CDD|235652 PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit;
Reviewed.
Length = 232
Score = 431 bits (1110), Expect = e-147
Identities = 145/221 (65%), Positives = 179/221 (80%), Gaps = 1/221 (0%)
Query: 567 DIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLA 626
D P MQ + V++ M+LDAL +IK +ID +LT RRSCREGVCGSDAMNINGKNGLA
Sbjct: 12 DANPRMQTYEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLA 71
Query: 627 CITNLNELK-QPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSP 685
CIT +++LK I+IRPLPGLPVI+DLVVDMT F+ Q+ SIKP+LI + PP +ERLQSP
Sbjct: 72 CITPISDLKKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPPARERLQSP 131
Query: 686 SQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNL 745
R+ LDGLYECILC CCST+CPSFWWN D+F+GPA LLQAYRFI+DSRDEAT RLD L
Sbjct: 132 EDREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDIL 191
Query: 746 EDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRII 786
+DP+ +FRC +IMNCV+ CPKGLNP ++I +IK +++ R +
Sbjct: 192 DDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLERRV 232
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 420 bits (1081), Expect = e-138
Identities = 224/558 (40%), Positives = 314/558 (56%), Gaps = 51/558 (9%)
Query: 2 RASLQLAQEGLNVAILSKVFPTRSH-TVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
RA+++ A+ G NV I+SK +S TV A+GG +A L +D++ H DT+KG YL
Sbjct: 21 RAAIE-AERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFEKHFEDTMKGGAYL 77
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
D +E + KEAPK + +LE FG FDR ++G I QRPFGG S N R C D
Sbjct: 78 NDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFN-------RTCYAGD 130
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
RTGH ++ L + + + E MAI LI D +++G + L++ G I + +K TI
Sbjct: 131 RTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATI 190
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV----AGAGVLITE 236
LATGG G+++ ++N TGDG +A RAG L DME QFHPTG+ +G G+L+TE
Sbjct: 191 LATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGMVYPYSGRGILVTE 250
Query: 237 GVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLR 296
VRGEGGIL N NGERFM+RY P +L+ RD V+RA+ EI+EGRG N V LD+
Sbjct: 251 AVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGT--NHGGVYLDVT 308
Query: 297 HINSETIINRLPSILEIGNKFAN--VNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNND 354
H+ E I +L ++LE +F + V+ KEP+ V PT H+ MGGI N + IP
Sbjct: 309 HLPDEVIEEKLETMLE---QFLDVGVDIRKEPMEVAPTAHHFMGGIRINEDCETNIP--- 362
Query: 355 NNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGR----SAGNHILSLELKKIHNK- 409
GL+A GE VHGANRLG N+L D VFG SA + + E KK++
Sbjct: 363 ------GLFACGE-VAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAENNEFKKVNRSV 415
Query: 410 KLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMIL 469
+ I I I L+ GS + + ++++KTM +Y + R +K +K ++I L
Sbjct: 416 EEDIARIKSEIKFLN------GSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEINEL 469
Query: 470 DERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDD 529
E+ K + +ALEL+N+I A+ I SA+ RKESRGAH D+ +D
Sbjct: 470 KEKLKDLKVNGIVDF-----NKALELENMILVAELVIKSALLRKESRGAHYREDYPETND 524
Query: 530 INWLKHSIWYSNGNRIEF 547
W + I N N+I+F
Sbjct: 525 -EWFGNII--LNKNKIKF 539
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 396 bits (1019), Expect = e-129
Identities = 185/550 (33%), Positives = 268/550 (48%), Gaps = 62/550 (11%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGD 62
A+L LA V +L+K S + AQGGI+A+L D+ H+ DT+ L D
Sbjct: 22 AALSLA-PSFRVTVLTKGPLGESSSYWAQGGIAAALSE--DDSPELHVADTLAAGAGLCD 78
Query: 63 QDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRT 122
++A+EF+ EAP+ + L G+PFDR+++G ++ GGHS R AD T
Sbjct: 79 EEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRR-------RILHAADAT 131
Query: 123 GHALLHTLYQRNLHAKTNFFIEW----MAIDLISDSEGDILGVVALEMETGNIMILESKI 178
G ++ L + + + N I A+DLI + + GV+ L G + +K
Sbjct: 132 GKEIMTAL-LKKVRNRPN--ITVLEGAEALDLIIEDGIGVAGVLVLN-RNGELGTFRAKA 187
Query: 179 TILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV---LIT 235
+LATGG G ++A +TN +TGDG+ MA RAG + D+EF QFHPT + LI+
Sbjct: 188 VVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQRRAFLIS 247
Query: 236 EGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDL 295
E VRGEG IL+N +GERFM Y P +LAPRD V+RA+D E+K G V LD+
Sbjct: 248 EAVRGEGAILVNEDGERFMPDYHP-RGELAPRDVVARAIDAEMKRGGA------DVFLDI 300
Query: 296 RHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDN 355
HI + R P+I K A ++ +EPIPV+P HY MGGI + G+ IP
Sbjct: 301 SHIPGDFFERRFPTIYAACLK-AGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIP---- 355
Query: 356 NKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINS 415
GLYAIGE AC +HGANRL +NSLL+ LVFG+ A I L + +
Sbjct: 356 -----GLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIA-GRLAPAPREAPTLPV 409
Query: 416 IDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKY 475
D + + + ++R+ M Y G+ RT K ++ +++ L +
Sbjct: 410 RDDYEENVLLAHDRH----------ELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDE 459
Query: 476 ISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKH 535
+ S NL A +A+ R ESRGAH D+ + +
Sbjct: 460 YANFRVS------------NRNLALVALLIARAALLRTESRGAHFRLDYPDTLP-EAQRR 506
Query: 536 SIWYSNGNRI 545
+ N
Sbjct: 507 ILVTLNDAEN 516
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 395 bits (1016), Expect = e-127
Identities = 208/581 (35%), Positives = 304/581 (52%), Gaps = 38/581 (6%)
Query: 2 RASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK---DNWHWHMFDTIKGSD 58
R ++ AQ GL+ +LS V RSH+ AAQGG+ ASLGN K DN H DT+KGSD
Sbjct: 19 RVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSD 78
Query: 59 YLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNG-----------TIYQRPFGG---HS 104
+ DQ+ APK V EL +G+P+ R G TI ++ ++
Sbjct: 79 WGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINA 138
Query: 105 SNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVAL 164
+FG R C AD TGH +L+ + + AI LI D + G V
Sbjct: 139 RDFGGTKKWRTCYTADGTGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGK-RCYGAVVR 197
Query: 165 EMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGL-PLEDMEFWQFH 223
+ TG + +K T++ATGG GRI+ +TNA I G G +A G+ PL +ME QFH
Sbjct: 198 CLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGAAIALETGVAPLGNMEAVQFH 257
Query: 224 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRG 283
PT + +G+L+TEG RG+GG+L + +G RFM Y P K+LA RD VSR M + I++G+G
Sbjct: 258 PTAIVPSGILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVSRRMTEHIRKGKG 317
Query: 284 C-GPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPT 342
P H+ LD+R + + I L + EI F ++ K+ IPV PT HY MGGI T
Sbjct: 318 VKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRT 377
Query: 343 NIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI---- 398
N G+ + + GL++ GE AC +HG NRLG NSL + +V G G ++
Sbjct: 378 NPTGE--------SYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429
Query: 399 LSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKL 458
L EL+ + L + DR+ +L +G E+V + N++++ M G+FR
Sbjct: 430 LGNELE--IDTALVEKFVKKQQDRIDELIAGEGKENVFEIKNEMQEIMMEKVGIFRNGPE 487
Query: 459 MKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGA 518
++ K++ L ER K I K K + N EAL + +++ A A++R ESRGA
Sbjct: 488 LEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRGA 547
Query: 519 HAHNDFKNRDDINWLKHSI-WYSNGNRIEFKP-VNLKPLTV 557
HA D+ R+D +WL ++ + G +P + +PL V
Sbjct: 548 HAREDYPKRNDRDWLNRTLASWPEGE--ALEPTLEYEPLDV 586
>gnl|CDD|171592 PRK12575, PRK12575, succinate dehydrogenase iron-sulfur subunit;
Provisional.
Length = 235
Score = 368 bits (947), Expect = e-123
Identities = 145/220 (65%), Positives = 184/220 (83%), Gaps = 1/220 (0%)
Query: 567 DIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLA 626
D P MQ++ + + D+MLLD L R+K D++L+ RRSCREG+CGSDAMNING+NGLA
Sbjct: 17 DAAPRMQRYEIAPRAEDRMLLDVLGRVKAQ-DETLSYRRSCREGICGSDAMNINGRNGLA 75
Query: 627 CITNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPS 686
C+TN+ L + I++RPLPGLPV+RDL+VDMT FF Q++SI+P+LI + PPE+ERLQ+P
Sbjct: 76 CLTNMQALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPPERERLQTPQ 135
Query: 687 QRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLE 746
+R+ LDGLYECILC CCSTACPS+WWN D+FVGPAGLLQAYRFI+DSRD+AT RLD+LE
Sbjct: 136 EREQLDGLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLE 195
Query: 747 DPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRII 786
DPYRLFRCR+IMNCVD CPKGLNP R+I +I+ ++ R +
Sbjct: 196 DPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLARRAV 235
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 375 bits (966), Expect = e-120
Identities = 202/575 (35%), Positives = 301/575 (52%), Gaps = 69/575 (12%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM-SKDNWHWHMFDTIKGSDY 59
+RA+++ + GL VA++ K ++HTV A+GG +A++GN+ KDNW H DT++G +
Sbjct: 21 LRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKF 80
Query: 60 LGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVA 119
L + E KEAP V+ELE +G FDR K+G I QR FGGH+ R V
Sbjct: 81 LNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHT-------YPRLAHVG 133
Query: 120 DRTGHALLHTLYQRNLH-------------AKTNFFIEWMAIDLISDSEGDILGVVALEM 166
DRTG L+ TL Q+ + A+ F E +L+ D G I G
Sbjct: 134 DRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWR 192
Query: 167 ETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTG 226
E+G ++ E+ +LATGG G+ + ++N++ TGDG +A RAG L +MEF QFHPTG
Sbjct: 193 ESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINMEFVQFHPTG 252
Query: 227 V----AGAGVLITEGVRGEGGILINSNGERFMERYAPIL--------------------- 261
+ + G+L+TEGVRG+GG+L NS G+RFM Y P +
Sbjct: 253 MVWPPSVKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDN 312
Query: 262 ----KDLAPRDFVSRAMDQEIKEGRGCGPNKDH--VMLDL-RHINSETIINRLPSILEIG 314
+L PRD V+RA++ E+K GRG H V LD+ + +E I RLPS+
Sbjct: 313 NRRPPELLPRDEVARAINSEVKAGRG----SPHGGVYLDIASRLPAEEIKRRLPSMYHQF 368
Query: 315 NKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVH 374
+ A+V+ KEP+ V PT HY MGG+ + P+ V GL+A GECA +H
Sbjct: 369 KELADVDITKEPMEVGPTCHYVMGGVEVD-------PDTGAAT-VPGLFAAGECAG-GMH 419
Query: 375 GANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDR-LSKLENNKGSE 433
G+NRLG NSL DLLVFGR AG + ++D L+ E G+E
Sbjct: 420 GSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAAREALAPFERPAGAE 479
Query: 434 SVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEAL 493
+ ++ ++++TM + G+ R + ++ +K+ L ER +S + + +N AL
Sbjct: 480 NPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSV-EGHRQYNPGWHLAL 538
Query: 494 ELDNLIETAKATISSAISRKESRGAHAHNDFKNRD 528
+L N++ ++ +A+ R ESRG H +D D
Sbjct: 539 DLRNMLLVSECVARAALERTESRGGHTRDDHPGMD 573
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 352 bits (905), Expect = e-114
Identities = 162/413 (39%), Positives = 217/413 (52%), Gaps = 52/413 (12%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK---DNWHWHMFDTIKGS 57
+ A+L+ A+ GL VA++ K P T + GGI A D+ H DT+KG
Sbjct: 12 LAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLHPTDTLKGL 71
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRN-KNGTIYQRPFGGHSSNFGEKPIARAC 116
D L D +E + AP+ V LE G+PF R+ ++G I RP GG S+ + R
Sbjct: 72 DELADHPYVEAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLSATW------RTP 125
Query: 117 A-VADR------TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETG 169
VADR TGHALL L + L +F A DLI + +G + GVV G
Sbjct: 126 HDVADRRRGTLGTGHALLARLLEGALKRGIDFQPRHPADDLIVE-DGRVTGVVVENRRNG 184
Query: 170 NIMILESKI-TILATGGGGR---------IWAASTNAFINTGDGLGMAARAGLPLED--M 217
+ + + +LATGG GR +A +T NTGDG+ +A RAG L D M
Sbjct: 185 REVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGAALTDDLM 244
Query: 218 EFWQFHPTGV----AGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRA 273
EF QFHPT + G+G+LI +RGEGGIL+N +G RFM +LA RD VSRA
Sbjct: 245 EFVQFHPTSLPGIRLGSGLLIE-ALRGEGGILVNDDGRRFM-------NELASRDVVSRA 296
Query: 274 MDQ-EIKEGRGCGPNKDHVMLDLRH-INSETIINRLPSILEIGNKFANVNALKEPIPVIP 331
+ + EI EGRG HV LD +++E + LP+ E +V+ PIPV P
Sbjct: 297 ITRNEIDEGRG-----AHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFP 351
Query: 332 TIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSL 384
HY MGG+ T+ G+V+ + + + + GLYA GE AC VHGANRLG NSL
Sbjct: 352 AQHYTMGGVRTDENGRVL---DADGQPIPGLYAAGEVACGGVHGANRLGGNSL 401
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 351 bits (902), Expect = e-111
Identities = 195/556 (35%), Positives = 289/556 (51%), Gaps = 64/556 (11%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+R +L++A+ G VAI++K P S+T AQGG+SA L D+ HM DTI +L
Sbjct: 42 LRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD--PSDSVESHMRDTIVAGAFL 98
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
D++ + +C E P+ V EL G FD ++G ++ GGHS + R AD
Sbjct: 99 CDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHH-------RIVHAAD 151
Query: 121 RTG----HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDIL---GVVALEMETGNIMI 173
TG ALL + +N FF AIDL++ +G + G L+ TG ++
Sbjct: 152 MTGREIERALLEAV--KN-DPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVR 208
Query: 174 LESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV- 232
SK+T+LA+GG G I+ ++TN + TGDG+ MA RA + +MEF QFHPT +A G+
Sbjct: 209 FISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPTALADEGLP 268
Query: 233 -----------LITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEG 281
LITE VRG+GGIL N GERFM Y +LAPRD V+R++D ++K+
Sbjct: 269 IKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERA-ELAPRDVVARSIDDQLKKR 327
Query: 282 RGCGPNKDHVMLDLRHINSETIINRLPSI----LEIGNKFANVNALKEPIPVIPTIHYQM 337
N+ +V+LD+ H E I++ P+I L+ G ++ K+PIPV+P HY
Sbjct: 328 -----NEKYVLLDISHKPREEILSHFPNIAAECLKRG-----LDITKQPIPVVPAAHYMC 377
Query: 338 GGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSA--- 394
GG+ T + G+ V GLYA GE AC +HGANRL +NSLL+ LVF R A
Sbjct: 378 GGVRTGLQGET---------NVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQP 428
Query: 395 -GNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVF 453
+H+ L+ ++ E V ++++ M NY G+
Sbjct: 429 SIDHMARALRDVSAAAAWARPVAPT---ALADSVMDEILEWTAVVRKELQRIMWNYVGIV 485
Query: 454 RTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRK 513
R+ + ++ +K+ L+ + I F+ K +EA E+ NL AK +SSA++RK
Sbjct: 486 RSTERLETAERKLEELEAEWEAILFRHGWKP-TMVGLEACEMRNLFCVAKLVVSSALARK 544
Query: 514 ESRGAHAHNDFKNRDD 529
ESRG H D+ +
Sbjct: 545 ESRGLHYTTDYPELVE 560
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 336 bits (864), Expect = e-107
Identities = 183/527 (34%), Positives = 265/527 (50%), Gaps = 61/527 (11%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGD 62
A+L LA +G V +LSK T ++ AQGGI+A L D+ H+ DT+ + D
Sbjct: 17 AALALADQG-RVIVLSKAPVTEGNSFYAQGGIAAVL--AETDSIDSHVEDTLAAGAGICD 73
Query: 63 QDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRT 122
++A+EF+ +A V L G+ FDR++ G+ GGHS R AD T
Sbjct: 74 REAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYR-------RILHAADAT 126
Query: 123 GHALLHTLYQR-NLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITIL 181
G ++ TL ++ H A+DL+ ++ G ++GV ET + + +L
Sbjct: 127 GREVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWNRET--VETCHADAVVL 183
Query: 182 ATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV---LITEGV 238
ATGG G+++ +TN I+TGDG+ +A RAG+ + D+EF QFHPT + LITE V
Sbjct: 184 ATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTALYKPRARYFLITEAV 243
Query: 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHI 298
RGEG L++ +G RFM + P +LAPRD V+RA+D E+K G D V LD I
Sbjct: 244 RGEGAYLVDRDGTRFMADFHP-RGELAPRDIVARAIDHEMKRG-----GADCVFLDASGI 297
Query: 299 NSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKI 358
E R P+I A ++ +EPIPV+P HY GGI + +G+ +P
Sbjct: 298 --EAFRQRFPTIYAKCLG-AGIDPTREPIPVVPAAHYTCGGISVDDHGRTTVP------- 347
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
GLYAIGE AC +HGANRL +NSLL+ LVFG SA I P
Sbjct: 348 --GLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRPPYASDISTSPPWD--- 402
Query: 419 IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKI-MILDERRKYIS 477
+ EN +Q +++R M +Y G+ R K ++ +++ M+ E
Sbjct: 403 ----EPRSENPDDRVVLQHNMSELRSFMWDYAGIVRLTKSLERALRRLVMLQQE------ 452
Query: 478 FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDF 524
I+ EL NL++ AK SA+ R+ESRGAH D+
Sbjct: 453 ------------IDEYELRNLVQVAKLITRSALMREESRGAHFRLDY 487
>gnl|CDD|215067 PLN00129, PLN00129, succinate dehydrogenase [ubiquinone]
iron-sulfur subunit.
Length = 276
Score = 328 bits (842), Expect = e-107
Identities = 128/237 (54%), Positives = 171/237 (72%), Gaps = 5/237 (2%)
Query: 548 KPVNLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSC 607
KP NLK + +P + KP++Q + V+L+ M+LD L +IK + D SLT RRSC
Sbjct: 39 KPSNLKEFQIYRWNPD--NPGKPHLQSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSC 96
Query: 608 REGVCGSDAMNINGKNGLACITNLN-ELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSI 666
REG+CGS AMNI+GKN LAC+T ++ + P I PLP + VI+DLVVDMT F++Q+ SI
Sbjct: 97 REGICGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSI 156
Query: 667 KPFLITNNNPPE--KERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLL 724
+P+L T P + KE LQS R LDG+YECILC CCST+CPS+WWN ++F+GPA LL
Sbjct: 157 EPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALL 216
Query: 725 QAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELM 781
AYR+ISDSRDE T RL+ L+D ++L+RC +I NC + CPKGLNP ++I KIK+L+
Sbjct: 217 HAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL 273
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 318 bits (817), Expect = 2e-99
Identities = 183/555 (32%), Positives = 271/555 (48%), Gaps = 57/555 (10%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGD 62
A+L L L V +++K S + AQGGI+A++ D+ H DT+K L D
Sbjct: 24 AALCLPSH-LRVGLITKDTLKTSASDWAQGGIAAAIAPD--DSPKLHYEDTLKAGAGLCD 80
Query: 63 QDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRT 122
+A+ F+ ++AP+ + L G+ FDR + HS R AD T
Sbjct: 81 PEAVRFLVEQAPEAIASLVEMGVAFDR-HGQHLALTLEAAHSRP-------RVLHAADTT 132
Query: 123 GHALLHTLYQRNLHAKTNFFI--EWMAIDLISDSE-GDILGVVALEMETGNIMILESKIT 179
G A++ TL ++ L + N I + +A+ L + E G G+ L G I L +
Sbjct: 133 GRAIVTTLTEQVL-QRPNIEIISQALALSLWLEPETGRCQGISLLYQ--GQITWLRAGAV 189
Query: 180 ILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV---LITE 236
ILATGGGG+++A +TN ++TGDG+ +A RAG L D+EF+QFHPT + G LI+E
Sbjct: 190 ILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALTKPGAPRFLISE 249
Query: 237 GVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLR 296
VRGEG L+++ G RF Y P +LAPRD VSRA+ +++ P HV LDLR
Sbjct: 250 AVRGEGAHLVDAQGRRFAFDYHP-AGELAPRDVVSRAIFSHLQK-TATDPATAHVWLDLR 307
Query: 297 HINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNN 356
I +E I R P+I+ + K+ ++ +EPIPV P HY MGG+ T++ Q IP
Sbjct: 308 PIPAERIRRRFPNIIRVCQKWG-IDVFQEPIPVAPAAHYWMGGVVTDLNNQTSIP----- 361
Query: 357 KIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSI 416
GLYA+GE A VHGANRL +NSLL+ LVF LEL + I
Sbjct: 362 ----GLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQ----LELPIEPPASPDLPPI 413
Query: 417 DIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYI 476
IID E +Q + ++ + + G+ R ++ ++ +++
Sbjct: 414 SFIIDASQW---KNEQEQIQRIRQELPELVWQSAGICREADTLERAIAQVE--QWQQQLA 468
Query: 477 SFK----------DKSKIFNTARIEA-----LELDNLIETAKATISSAISRKESRGAHAH 521
+ ++ FN E E NL++ A + SA+ R ESRG H
Sbjct: 469 ALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYR 528
Query: 522 NDFKNRDDINWLKHS 536
D+ D W H+
Sbjct: 529 LDYPQTDP-AWQVHT 542
>gnl|CDD|223555 COG0479, FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S
protein subunit [Energy production and conversion].
Length = 234
Score = 306 bits (785), Expect = 4e-99
Identities = 118/219 (53%), Positives = 151/219 (68%), Gaps = 3/219 (1%)
Query: 567 DIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLA 626
D KPY Q + V +LDAL IK + D +L+ RRSCREG+CGS AMNINGK LA
Sbjct: 14 DDKPYWQTYEVPYDEG-MTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLA 72
Query: 627 CITNLNELKQPII-IRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSP 685
C T + +L++ +I I PLP PVIRDLVVDM F+++ IKP+LI ++ P ERLQSP
Sbjct: 73 CKTLMKDLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPDPGERLQSP 132
Query: 686 SQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNL 745
+R+ LD L ECILCGCC+ ACPS WWN D F+GPA L QAYRF++DSRDE T RL L
Sbjct: 133 EEREKLDELSECILCGCCTAACPSIWWNPD-FLGPAALRQAYRFLADSRDEGTAERLKIL 191
Query: 746 EDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
EDP ++RC + NC + CPKG+ P ++I ++K + R
Sbjct: 192 EDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKR 230
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 314 bits (806), Expect = 2e-98
Identities = 184/530 (34%), Positives = 269/530 (50%), Gaps = 61/530 (11%)
Query: 13 NVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKE 72
NV I++K S++ AQGGI+A++ + D+ + H DT+ + ++ A+ ++ +E
Sbjct: 27 NVIIITKKTKRNSNSHLAQGGIAAAVA--TYDSPNDHFEDTLVAGCHHNNERAVRYLVEE 84
Query: 73 APKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARAC-AVADRTGHALLHTLY 131
PK + EL GMPFD ++ G ++ G H R A D TG LL L
Sbjct: 85 GPKEIQELIENGMPFDGDETGPLHLGKEGAHRKR-------RILHAGGDATGKNLLEHLL 137
Query: 132 QRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWA 191
Q L + M IDLI + G +GV+ + E G + + +LA+GG G ++A
Sbjct: 138 QE-LVPHVTVVEQEMVIDLIIE-NGRCIGVLTKDSE-GKLKRYYADYVVLASGGCGGLYA 194
Query: 192 ASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV---LITEGVRGEGGILINS 248
++N TGDGL MA RAG L D+EF QFHPT + G L++E VRGEG +LIN
Sbjct: 195 FTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANGRCVGLVSEAVRGEGAVLINE 254
Query: 249 NGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHI-NSETIINRL 307
+G RFM P L DLAPRD V+RA+ +E+ G + V L++ I N E R
Sbjct: 255 DGRRFMMGIHP-LADLAPRDVVARAIHEELLSG-------EKVYLNISSIQNFEE---RF 303
Query: 308 PSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGE 367
P+I + K V+ + IPV+P H+ MGG+ TN+ G+ IP GLYAIGE
Sbjct: 304 PTISALCEK-NGVDIETKRIPVVPGAHFLMGGVKTNLDGETSIP---------GLYAIGE 353
Query: 368 CACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLE 427
AC VHGANRL +NSLL+ LVFG+ A HIL+ K N I+++ L E
Sbjct: 354 VACTGVHGANRLASNSLLEGLVFGKRAAEHILTKATKPRLNPFAEKEKKFIVLNHLPTKE 413
Query: 428 NNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNT 487
+I++ M Y G+ RT++ + + + R + +
Sbjct: 414 -------------EIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALT----- 455
Query: 488 ARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSI 537
E +EL +++ AK + SA+ R ESRG H +D+ +R NW I
Sbjct: 456 --NEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR---NWRGKEI 500
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 302 bits (776), Expect = 1e-93
Identities = 178/552 (32%), Positives = 257/552 (46%), Gaps = 81/552 (14%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGD 62
A+L + G V +++K T AQGGI+A L D+ H+ DT+ L D
Sbjct: 31 AALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDP--GDSPEAHVADTLVAGAGLCD 88
Query: 63 QDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRT 122
DA+ + E P+ V EL G FD + +G GGHS I A D T
Sbjct: 89 PDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRR----RIVHAGG--DAT 142
Query: 123 G----HALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGN---IMILE 175
G AL + L + + +A+DL++D G + GV + G+ + +
Sbjct: 143 GAEVQRALDAAVRADPLDIREHA----LALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVH 198
Query: 176 SKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV-AGAGV-- 232
+ +LATGG G+++AA+TN +TGDG+ +A RAG + D+EF QFHPT + G
Sbjct: 199 APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHPTVLFLGPAAGG 258
Query: 233 ---LITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKD 289
LI+E VRGEG IL+++ G RFM P L DLAPRD V++A+D+ +K G D
Sbjct: 259 QRPLISEAVRGEGAILVDAQGNRFMAGVHP-LADLAPRDVVAKAIDRRMKA-TG----DD 312
Query: 290 HVMLDLRHINSETIINRLPSI----LEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIY 345
HV LD R I E R P+I G ++ +++PIPV P HY GG+ T++Y
Sbjct: 313 HVYLDARGI--EGFARRFPTITASCRAAG-----IDPVRQPIPVAPAAHYSCGGVVTDVY 365
Query: 346 GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS-LELK 404
G+ +P GLYA GE AC VHGANRL +NSLL+ LV G AG +
Sbjct: 366 GRTSVP---------GLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHAAAA 416
Query: 405 KIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRT-DKLMKNGY 463
+ ++ L + E +++ M GV R+ L +
Sbjct: 417 GRPRATPAVGPEPGLLPALDRAE--------------LQRAMTRGAGVLRSAAGLAR--- 459
Query: 464 KKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND 523
D + E NL A+A +++A++R ESRG H D
Sbjct: 460 ----AADRLAA------GAPARVVPGRADWEDTNLTLVARALVAAALARTESRGCHWRED 509
Query: 524 FKNRDDINWLKH 535
F + DD W +
Sbjct: 510 FPDTDD-EWARS 520
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 300 bits (771), Expect = 7e-93
Identities = 183/545 (33%), Positives = 273/545 (50%), Gaps = 66/545 (12%)
Query: 5 LQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQD 64
L+LA+ VA+LSK + T AQGGI+A L D+ H+ DT+ L D+D
Sbjct: 25 LRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD--ETDSIESHVEDTLIAGAGLCDED 81
Query: 65 AIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPF-----GGHSSNFGEKPIARACAVA 119
A+ F+ + A + V L G+PF ++ + + GGHS R A
Sbjct: 82 AVRFIAENAREAVQWLIDQGVPFTTDEQANGEEG-YHLTREGGHSHR-------RILHAA 133
Query: 120 DRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLISDS----EGD-ILGVVALEMETGNIMI 173
D TG A+ TL +R H AIDLI+ G ++G L +
Sbjct: 134 DATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVET 193
Query: 174 LESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV---AGA 230
+ +K +LATGG +++ +TN I +GDG+ MA RAG + +MEF QFHPT +
Sbjct: 194 IRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQFHPTCLYHPQAR 253
Query: 231 GVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDH 290
LITE +RGEG L +G RFM + +LAPRD V+RA+D E+K G D
Sbjct: 254 SFLITEALRGEGAYLKLPDGTRFMPDFDE-RAELAPRDIVARAIDHEMKR-LGA----DC 307
Query: 291 VMLDLRHINSETIINRLPSI----LEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYG 346
V LD+ H ++ I P+I LE+G ++ KEPIPV+P HY GG+ +++G
Sbjct: 308 VYLDISHKPADFIRQHFPTIYERCLELG-----IDITKEPIPVVPAAHYTCGGVMVDLHG 362
Query: 347 QVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKI 406
+ + GLYAIGE + +HGANR+ +NSLL+ LV+GRSA ILS K
Sbjct: 363 RTDLD---------GLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLPKAP 413
Query: 407 HNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKI 466
LP + D S++ ++ +Q +++R M +Y G+ RT K ++ +I
Sbjct: 414 MPPTLP--AWD-----ESRVTDSDEEVVIQHNWHELRLFMWDYVGIVRTTKRLERALHRI 466
Query: 467 -MILDERRKYIS-FKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDF 524
++ E +Y + F+ + + LEL NL++ A+ + A+ RKESRG H D+
Sbjct: 467 RLLQQEIDEYYANFRVSNNL--------LELRNLVQVAELIVRCAMERKESRGLHYTLDY 518
Query: 525 KNRDD 529
Sbjct: 519 PELLP 523
>gnl|CDD|232950 TIGR00384, dhsB, succinate dehydrogenase and fumarate reductase
iron-sulfur protein. Succinate dehydrogenase and
fumarate reductase are reverse directions of the same
enzymatic interconversion, succinate + FAD+ = fumarate +
FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse
reactions are catalyzed by distinct complexes: fumarate
reductase operates under anaerobic conditions and
succinate dehydrogenase operates under aerobic
conditions. This model also describes a region of the B
subunit of a cytosolic archaeal fumarate reductase
[Energy metabolism, Aerobic, Energy metabolism,
Anaerobic, Energy metabolism, TCA cycle].
Length = 220
Score = 283 bits (725), Expect = 2e-90
Identities = 114/214 (53%), Positives = 147/214 (68%), Gaps = 4/214 (1%)
Query: 567 DIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLA 626
D KP++Q + V +LDAL+ IK + D SL RRSCR G+CGS AMN+NGK LA
Sbjct: 9 DEKPHLQSYEVPADEG-MTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLA 67
Query: 627 CITNLNELKQP-IIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNN-NPPEKERLQS 684
C T + +L QP + I PLP LPVI+DLVVDM F+ + +IKP+LI + PE E LQ+
Sbjct: 68 CKTKVEDLGQPVMKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQT 127
Query: 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDN 744
P QR+ LD L CILCGCC ++CP+FWWN + F+GPA L AYRF+ DSRD AT RL+
Sbjct: 128 PEQREKLDQLSGCILCGCCYSSCPAFWWNPE-FLGPAALTAAYRFLIDSRDHATKDRLEG 186
Query: 745 LEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIK 778
L D ++RC + MNC + CPKG+NP R+I K+K
Sbjct: 187 LNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 294 bits (754), Expect = 8e-90
Identities = 177/614 (28%), Positives = 273/614 (44%), Gaps = 78/614 (12%)
Query: 3 ASLQLAQEGLNVAILSKV-FPTRSHTVAAQGGISASLGNMSK-DNWHWHMFDTIKGSDYL 60
A+ +LA+ G +V + S V P R+H++AAQGGI+ ++ D+ H DT+KG D+
Sbjct: 13 AAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFR 72
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGG--HSSNFGEKPIARACAV 118
+ ++ + +P+++ ++ G+PF R G + R FGG S AR
Sbjct: 73 ARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTA----YARG--- 125
Query: 119 ADRTGHALLHTLY---QRNLHAKT-NFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174
+TG LL L +R + A + W +D+I G++A + TG I
Sbjct: 126 --QTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETH 183
Query: 175 ESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAG--- 231
+ ILATGG G ++ STNA + A G + EF Q HPT + G
Sbjct: 184 SADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIPVDGTWQ 243
Query: 232 ---VLITEGVRGEGGI----------LINS--NGER--FMERYAPILKDLAPRDFVSRAM 274
L++E +R +G I N+ +R F+ER P +L PRD SRA+
Sbjct: 244 SKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAI 303
Query: 275 DQEIKEGRGCGPNKDHVMLDLRH----INSETIINRLPSILEIGNKFANVNALKEPIPVI 330
Q G+G GP ++ V LD + + I + ++ E+ KF + K P+ +
Sbjct: 304 FQVCDAGKGVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIF 363
Query: 331 PTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVF 390
P +HY MGG+ + IP GL+A GEC S HGANRLG NSLL +
Sbjct: 364 PAVHYTMGGLWVDYDQMTNIP---------GLFAAGECD-FSQHGANRLGANSLLSAIAD 413
Query: 391 GRSAG----NHILSLELKKIH-NKKLPINSIDI--IIDRLSKLENNKGSESVQSVANDIR 443
G A + L EL + P + +R +L +G E+ + ++
Sbjct: 414 GYFALPFTIPNYLGPELSSEDMPEDAPEFQAALAEEQERFDRLLKMRGDENPYYLHRELG 473
Query: 444 KTMQNYCGVFRTDKLMKNGYKKIMILDER-RKYISFKDKSKIFNTARIEALELDNLIETA 502
+ M CGV R ++ + +KI L ER K I +K N A + + +E A
Sbjct: 474 EIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELA 533
Query: 503 KATISSAISRKESRGAHAHNDFKN------RDDINWLKHSIWYSNGNRIEFKPVNLKP-- 554
+ A++R ES GAH +F R+D +LK + W EF+ N P
Sbjct: 534 ELMCLDALNRNESCGAHFRPEFPTPDGEAERNDEEFLKVTAW-------EFQGENDAPEF 586
Query: 555 ----LTVKTVHPKK 564
L + V P+K
Sbjct: 587 HYEELDFELVPPRK 600
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 284 bits (728), Expect = 7e-87
Identities = 158/509 (31%), Positives = 219/509 (43%), Gaps = 81/509 (15%)
Query: 30 AQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDR 89
AQGGI+A+LG D+ H DT+ L D + EAP + +L G+PFDR
Sbjct: 50 AQGGIAAALG--PDDSPALHAADTLAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDR 107
Query: 90 NKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIE-WMAI 148
+ +G + HS + I D G A++ L + +E A
Sbjct: 108 DADGRLALGLEAAHS----RRRIVHV--GGDGAGAAIMRALIAAVRATPSITVLEGAEAR 161
Query: 149 DLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAA 208
L+ D +G + GV+A G +++ + +LATGG G ++A +TN G GL +AA
Sbjct: 162 RLLVD-DGAVAGVLA-ATAGGPVVLPARAV-VLATGGIGGLYAVTTNPAGAFGQGLALAA 218
Query: 209 RAGLPLEDMEFWQFHPTGVAGAG---VLITEGVRGEGGILINSNGERFMERYAPILKDLA 265
RAG + D EF QFHPT + L TE +RGEG ILIN +GERFM P +LA
Sbjct: 219 RAGAVIADPEFVQFHPTAIDIGRDPAPLATEALRGEGAILINEDGERFMADIHP-GAELA 277
Query: 266 PRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKE 325
PRD V+RA+ EI GRG LD R R P++ A ++ ++
Sbjct: 278 PRDVVARAVFAEIAAGRG-------AFLDARAALGAHFATRFPTVYAACRS-AGIDPARQ 329
Query: 326 PIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLL 385
PIPV P HY MGGI + G+ +P GL+A GE A +HGANRL +NSLL
Sbjct: 330 PIPVAPAAHYHMGGIAVDADGRSSLP---------GLWAAGEVASTGLHGANRLASNSLL 380
Query: 386 DLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKT 445
+ +VF A I + +A +R
Sbjct: 381 EAVVFAARAAEDIAGTPAAA----------------AAPLSAAAAPALDPADLA-LLRPI 423
Query: 446 MQNYCGVFRT-DKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALE-----LDNLI 499
M + GV R D L R+ I A + LE +
Sbjct: 424 MSRHVGVLRDADGL--------------RRAI-----------AALLPLEAGAGPAADPA 458
Query: 500 ETAKATISSAISRKESRGAHAHNDFKNRD 528
A +A++R+ESRGAH DF
Sbjct: 459 TVALLIAVAALAREESRGAHFRTDFPLTA 487
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 285 bits (732), Expect = 1e-86
Identities = 177/576 (30%), Positives = 278/576 (48%), Gaps = 54/576 (9%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHW-HMFDTIKGSDYLG 61
A+++ A+ G++V + S V RSH+V AQGGI+ ++ + + W H DT+ G D+L
Sbjct: 18 ATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLA 77
Query: 62 DQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGG---HSSNFGEKPIARACAV 118
+Q ++ MC+ AP +++ L+ G+ F+R G + R FGG H + F A A
Sbjct: 78 NQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAF-------AGAT 130
Query: 119 ADRTGHALLHTL----YQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174
TG LL+ L + + + W + + D EG G+VA ++ T I
Sbjct: 131 ---TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESF 187
Query: 175 ESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGV-- 232
+ I+ATGG G I+ STN+ INTG + G + EF Q HPT + G
Sbjct: 188 PADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTAIPGDDKLR 247
Query: 233 LITEGVRGEGG-ILINSNGER--FMERYAPILKDLAPRDFVSRAM-DQEIKEGRGCGPNK 288
L++E RGEGG + +G+ F+E P +L PRD +R + D +++ G +
Sbjct: 248 LMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGIN-GE 306
Query: 289 DHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQV 348
+ V LDL H + + + +L ILEI KF + K P+ + P +HY MGG+ +
Sbjct: 307 NMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQMT 366
Query: 349 IIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDL----LVFGRSAGNHILSLEL- 403
IP GL+A GEC S HGANRLG NSLL +V G +A +I L
Sbjct: 367 NIP---------GLFAAGECD-YSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKGLGKS 416
Query: 404 -----KKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKL 458
+ + L ++ + + G+E+ + ++ + M + V R +
Sbjct: 417 ADDVSSSVFEQALKQE-----QEKFDNILSMDGTENAYVLHKELGEWMTDNVTVVRENDK 471
Query: 459 MKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGA 518
+ +KI L ER K IS D S+ N +L N++E A+ A++R ESRGA
Sbjct: 472 LLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGA 531
Query: 519 HAHNDFKNRDDINWLKHSI-WYS---NGNRIEFKPV 550
H +F R+D NWLK ++ Y+ ++ V
Sbjct: 532 HYKPEFPERNDENWLKTTMATYTPEGEEPEFSYEDV 567
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 247 bits (633), Expect = 3e-74
Identities = 137/426 (32%), Positives = 216/426 (50%), Gaps = 43/426 (10%)
Query: 10 EGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGDQDAIEFM 69
+ L + ++SK +T AQGGIS + KD+ + DT+K Y + +A++ +
Sbjct: 25 KDLKILMVSKGKLNECNTYLAQGGISVARN---KDDITSFVEDTLKAGQYENNLEAVKIL 81
Query: 70 CKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHT 129
E+ + + +L G+ FD+++ Y + G HS N R D TG +
Sbjct: 82 ANESIENINKLIDMGLNFDKDEKELSYTKE-GAHSVN-------RIVHFKDNTGKKVEKI 133
Query: 130 LYQRNLHAKTNFFIE-WMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR 188
L ++ K IE +D+I + I + + + NI SK+TILATGG G
Sbjct: 134 LLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIY---SKVTILATGGIGG 190
Query: 189 IWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPT-----GVAGAGVLITEGVRGEGG 243
++ STN I TGDG+ +A R + ++D+++ Q HPT + G LI+E VRGEGG
Sbjct: 191 LFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEETIEGKKFLISESVRGEGG 250
Query: 244 ILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETI 303
L+NS GERF + +L PRD V++A+ +E+K+ ++V LD+ ++ + +
Sbjct: 251 KLLNSKGERF-------VDELLPRDVVTKAILEEMKK-----TGSNYVYLDITFLDKDFL 298
Query: 304 INRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLY 363
NR P+I E K ++ K+ IPV P HY MGGI ++ + + N LY
Sbjct: 299 KNRFPTIYEECLK-RGIDITKDAIPVSPAQHYFMGGIKVDLNSKTSMKN---------LY 348
Query: 364 AIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRL 423
A GE +C VHGANRL +NSLL+ LVF + I S E+ I + ++ ++
Sbjct: 349 AFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS-EIDNIKLNITKVYTLKHDVEYY 407
Query: 424 SKLENN 429
S L
Sbjct: 408 SLLNKK 413
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 201 bits (512), Expect = 1e-56
Identities = 153/528 (28%), Positives = 242/528 (45%), Gaps = 102/528 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYLGD 62
A++ LA++G +V I+ +S++ AQ GI+ + + D+ H+ DTI+ Y+ D
Sbjct: 16 AAISLAKKGFDVTIIGPG-IKKSNSYLAQAGIAFPI--LEGDSIRAHVLDTIRAGKYIND 72
Query: 63 QDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRT 122
++ + + ++ + L G+ F+ N+ GGHS R + + T
Sbjct: 73 EEVVWNVISKSSEAYDFLTSLGLEFEGNELE-------GGHS-------FPRVFTIKNET 118
Query: 123 GHALLHTLYQRNLHAKTNF---FIEWMAIDLISDSEGDILGVVALEMETGNIMILESKIT 179
G ++ LY+ NF F E +AI G GV L+ E +L+ T
Sbjct: 119 GKHIIKILYKHARELGVNFIRGFAEELAI-----KNGKAYGVF-LDGE-----LLKFDAT 167
Query: 180 ILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGA-GV-LITEG 237
++ATGG ++ + + +N G +G A G P D+EF QFHPTG G G LI+E
Sbjct: 168 VIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKRGTYLISEA 227
Query: 238 VRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRH 297
VRG G L+ +GERF + +L RD V+RA+ ++++EG+G V LD
Sbjct: 228 VRGAGAKLVTGDGERF-------VNELETRDIVARAIYRKMQEGKG-------VFLDATG 273
Query: 298 INSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNK 357
I E R P I K ++ ++ IPV P HY +GGI + + + I N
Sbjct: 274 I--EDFKRRFPQIYAFLRK-EGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIKN----- 325
Query: 358 IVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSID 417
LYAIGE A HGANRL +NSLL+ +V G I K K+ P +
Sbjct: 326 ----LYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRERPKLREVKEPPYHG-- 379
Query: 418 IIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477
L +++ IR+ + N+ G+ R+++ ++ G KK
Sbjct: 380 ---YELGDVDS-------------IREILWNHAGIVRSEESLREGLKK------------ 411
Query: 478 FKDKSKIFNTARIEALELDNLIE-TAKATISSAISRKESRGAHAHNDF 524
+E +E D ++ AK + A++R+ESRGAH DF
Sbjct: 412 ------------LEGIEADPRLKLLAKGVLECALAREESRGAHYREDF 447
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 187 bits (478), Expect = 2e-50
Identities = 179/636 (28%), Positives = 269/636 (42%), Gaps = 125/636 (19%)
Query: 3 ASLQLAQEGLNVAILSKVF-----PTRSHTVAAQGGISASLGNMSKDN--WHWHMFDTIK 55
A+ L + G NV KVF P R+H++AAQGGI+A+ N D + +DT+K
Sbjct: 50 AAATLGELGYNV----KVFCYQDSPRRAHSIAAQGGINAA-KNYQNDGDSVYRLFYDTVK 104
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHF-----------GMPFDRNKNGTIYQRPFGGH- 103
G D+ +EA VY L G+PF R G + R FGG
Sbjct: 105 GGDF---------RAREAN--VYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQ 153
Query: 104 -SSNFGEKPIARACAVADRTGHALLHTLYQ---RNLHAKTNFFIEWMA----IDLISDSE 155
S F AR +TG LL YQ R + A T ++ +DL+ +
Sbjct: 154 VSRTF----YARG-----QTGQQLLLGAYQALSRQIAAGT---VKMYTRTEMLDLVV-VD 200
Query: 156 GDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLE 215
G G+VA + TG I + +LATGG G ++ STNA + + A + G
Sbjct: 201 GRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFA 260
Query: 216 DMEFWQFHPTGVAGAG------VLITEGVRGEGGILINSN------------GER--FME 255
+ F Q HPT + +G L++E +R +G I + ER ++E
Sbjct: 261 NPCFTQIHPTCIPVSGDYQSKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLE 320
Query: 256 RYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRH-INS---ETIINRLPSIL 311
R P +L PRD SRA + GRG GP V LD I + I R ++
Sbjct: 321 RRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLF 380
Query: 312 EIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACV 371
++ + N + P+ + P +HY MGG+ + IP GL+ IGE
Sbjct: 381 DMYERITGENPYETPMRIYPAVHYTMGGLWVDYNLMSTIP---------GLFVIGEANF- 430
Query: 372 SVHGANRLGTNSLLDLLVFG-----RSAGNHILSLELKKIHNKKLPINS------IDIII 420
S HGANRLG ++L+ L G + GN++ I K+ + +
Sbjct: 431 SDHGANRLGASALMQGLADGYFVLPYTIGNYLADT----IGTPKVSTDHPEFKEAEAEVQ 486
Query: 421 DRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKD 480
DR+ +L N KG +V S ++ K M +YCG+ R ++ +K +KI L E F
Sbjct: 487 DRIDRLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREE-----FWK 541
Query: 481 KSKI------FNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKN------RD 528
++ N +A + + +E + A+ R+ES G H + + RD
Sbjct: 542 NVRVPGSADELNQELEKAGRVADFLELGELMCRDALHREESCGGHFREEHQTEDGEALRD 601
Query: 529 DINWLKHSIWYSNGNRIEFKPVNLK-PLTVKTVHPK 563
D N+ + W G+ E PV K PL + V
Sbjct: 602 DENFAYVAAWEYKGDGKE--PVLHKEPLEFENVKLA 635
>gnl|CDD|183605 PRK12577, PRK12577, succinate dehydrogenase iron-sulfur subunit;
Provisional.
Length = 329
Score = 177 bits (452), Expect = 7e-50
Identities = 86/223 (38%), Positives = 126/223 (56%), Gaps = 15/223 (6%)
Query: 570 PYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629
PY+Q + + + + +LD L+RIK++ D SL R++CR +CGS AM ING++ LAC
Sbjct: 16 PYVQTYTLEVEPGNT-ILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKE 74
Query: 630 NL-NELKQ----------PIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLIT-NNNPP 677
N+ +EL + I I PL +PVI+DLVVDM+ F++ ++ P++ T P
Sbjct: 75 NVGSELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVP 134
Query: 678 EKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEA 737
E+E LQ+P +R LD CILCG C + C + N + FVGP L +A R ++DSRD A
Sbjct: 135 EREFLQTPEERSKLDQTGNCILCGACYSECNAREVNPE-FVGPHALAKAQRMVADSRDTA 193
Query: 738 TNFRLDNLEDPYR-LFRCRSIMNCVDTCPKGLNPNRSINKIKE 779
T RL+ ++ C C CP + P I KIK+
Sbjct: 194 TEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQ 236
>gnl|CDD|237143 PRK12576, PRK12576, succinate dehydrogenase iron-sulfur subunit;
Provisional.
Length = 279
Score = 172 bits (437), Expect = 2e-48
Identities = 68/199 (34%), Positives = 103/199 (51%), Gaps = 9/199 (4%)
Query: 586 LLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNEL----KQPIIIR 641
+ +AL RIK + D +L+ R SC VCGS M ING+ LAC T + ++ I I
Sbjct: 37 VTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKTLVLDVAKKYNSVITIE 96
Query: 642 PLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNN--PPEKERLQSPSQRKILDGLYECIL 699
P+ V++DL+VD F+++ +KP L + E P +K L +CI
Sbjct: 97 PMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIW 156
Query: 700 CGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMN 759
CG C +ACP + + F+GPA + YRF++D RD T R+ L D +RC +
Sbjct: 157 CGLCVSACPVVAIDPE-FLGPAAHAKGYRFLADPRDTITEERMKILIDS--SWRCTYCYS 213
Query: 760 CVDTCPKGLNPNRSINKIK 778
C + CP+ + P +I K +
Sbjct: 214 CSNVCPRDIEPVTAIKKTR 232
>gnl|CDD|217281 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term.
This family contains fumarate reductases, succinate
dehydrogenases and L-aspartate oxidases.
Length = 127
Score = 160 bits (408), Expect = 2e-46
Identities = 56/123 (45%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 440 NDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLI 499
++++ MQ + GVFRT++ ++ +KI L ER K + DKSK+FNT IEALEL NL+
Sbjct: 2 KELQEIMQEHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLIEALELGNLL 61
Query: 500 ETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGN---RIEFKPVNLKPLT 556
E A+A +SA++RKESRGAH D+ RDD NWLKH++ Y +G+ R++++PV + +
Sbjct: 62 ELAEAIATSALARKESRGAHYREDYPERDDENWLKHTLAYYDGDGGPRLDYEPVVITRIP 121
Query: 557 VKT 559
K
Sbjct: 122 PKE 124
>gnl|CDD|183490 PRK12385, PRK12385, fumarate reductase iron-sulfur subunit;
Provisional.
Length = 244
Score = 161 bits (408), Expect = 8e-45
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 3/229 (1%)
Query: 551 NLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREG 610
+K L ++ + D +P+ Q + V LLDAL IK ++ L+ R SCR
Sbjct: 3 EMKNLKIEVLRYNPEVDTEPHSQTYEVPYD-ETTSLLDALGYIKDNLAPDLSYRWSCRMA 61
Query: 611 VCGSDAMNINGKNGLACITNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFL 670
+CGS M +N LAC T L + + + L P+ RDLVVDMT F + +IKP++
Sbjct: 62 ICGSCGMMVNNVPKLACKTFLRDYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYI 121
Query: 671 ITNNNPPEK-ERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRF 729
I N+ P+ Q+P+Q CI CG C ACP F N + F+GPA + A+R+
Sbjct: 122 IGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRY 180
Query: 730 ISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIK 778
DSRD R+ L ++ C + C + CPK ++P +I + K
Sbjct: 181 NLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGK 229
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 161 bits (410), Expect = 5e-43
Identities = 129/458 (28%), Positives = 197/458 (43%), Gaps = 94/458 (20%)
Query: 1 MRASLQLAQEGL-NVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTI 54
+ A+L + G NV +L K+ ++ A GG++A+ + K D+ + DT+
Sbjct: 12 LSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTL 71
Query: 55 KGSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIAR 114
KG + D D + + +E+ + G+ + GGHS +P
Sbjct: 72 KGGRGINDPDLVRILAEES-ADAVDWLQDGVGARLDDLIQ-----LGGHSVPRAHRPTGG 125
Query: 115 ACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174
A +G ++ LY++ + + DLI D +G ++GVV + + I I
Sbjct: 126 A-----ASGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVV-KGKGKGIYIK 179
Query: 175 ESKITILATGGGGR------------IWAASTNAFINTGDGLGMAARAGLPLEDMEFWQF 222
+K +LATGG G STN TGDGL MA + G L DM++ Q
Sbjct: 180 AAKAVVLATGGFGSNKEMIAKYDPTLKKLGSTNQPGATGDGLLMAEKIGAALVDMDYIQA 239
Query: 223 HPTG-VAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEG 281
HPT G LI+E VRG G IL+N GERFM +LA RD VS A+ +
Sbjct: 240 HPTASPDEGGFLISEAVRGYGAILVNKTGERFMN-------ELATRDTVSDAILAQ---- 288
Query: 282 RGCGPNKDHVMLDLRHINSETIINRL--------PSILEIGNKFA-NVNALKEPI----- 327
G + + D + ++ + N S+ E+ +F ALK+ +
Sbjct: 289 --PGKSAYLIFDDDVYKKAKKVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYND 346
Query: 328 -----------------------PVI-----PTIHYQMGGIPTNIYGQVIIPNNDNNKIV 359
P P +H+ MGG+ N +V+ + N K +
Sbjct: 347 YVASGKDTPFGRPMDMPVDLSKSPYYAIKVTPGVHHTMGGVKINTKAEVL---DANGKPI 403
Query: 360 NGLYAIGECACVS--VHGANRLGTNSLLDLLVFGRSAG 395
GL+A GE V+ VHGANRLG N++ D +VFGR AG
Sbjct: 404 PGLFAAGE---VTGGVHGANRLGGNAIADCIVFGRIAG 438
>gnl|CDD|221911 pfam13085, Fer2_3, 2Fe-2S iron-sulfur cluster binding domain. The
2Fe-2S ferredoxin family have a general core structure
consisting of beta(2)-alpha-beta(2) which abeta-grasp
type fold. The domain is around one hundred amino acids
with four conserved cysteine residues to which the
2Fe-2S cluster is ligated.
Length = 107
Score = 131 bits (333), Expect = 3e-36
Identities = 51/96 (53%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
Query: 567 DIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLA 626
D +PY Q++ V +LDAL+ IK + D +L R SCREGVCGS AM INGK LA
Sbjct: 12 DAEPYYQEYEVEYEE-GMTVLDALNYIKEEQDPTLAFRASCREGVCGSCAMRINGKPRLA 70
Query: 627 CITNLNELKQP--IIIRPLPGLPVIRDLVVDMTLFF 660
C T +++L + I I PLPG PVIRDLVVD + FF
Sbjct: 71 CKTLIDDLLKGEEITIEPLPGFPVIRDLVVDRSPFF 106
>gnl|CDD|184136 PRK13552, frdB, fumarate reductase iron-sulfur subunit;
Provisional.
Length = 239
Score = 130 bits (330), Expect = 3e-34
Identities = 77/212 (36%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 569 KPYMQKFLVNLSSNDKM-LLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLAC 627
KP+M + L M L AL+RI+ + D SL CR G+CGS AM ING+ LAC
Sbjct: 20 KPHMVTY--QLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLAC 77
Query: 628 ITNLNELKQPII-IRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPS 686
T ++ +I + PLP +I DL V+ +F++ + I + + RL+
Sbjct: 78 RTLTSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERM 137
Query: 687 QRKILDGLYE---CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLD 743
+ + D +YE CI CGCC AC + D FVG GL + RF D RDE T
Sbjct: 138 EPEEADEIYELDRCIECGCCVAACGTKQMRED-FVGAVGLNRIARFELDPRDERT----- 191
Query: 744 NLEDPYRL-------FRCRSIMNCVDTCPKGL 768
ED Y L F C S++ C D CPK L
Sbjct: 192 -DEDFYELIGNDDGVFGCMSLLGCEDNCPKDL 222
>gnl|CDD|235756 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Provisional.
Length = 486
Score = 133 bits (337), Expect = 4e-33
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 23/230 (10%)
Query: 554 PLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCG 613
+TVK P+K +P+ + + V + +LDAL I D ++ R SCR G CG
Sbjct: 5 TITVKRFDPEKD---EPHFESYEVPVKEGMT-VLDALEYINKTYDANIAFRSSCRAGQCG 60
Query: 614 SDAMNINGKNGLACITNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITN 673
S A+ ING+ LAC T E++ +II PL PVI+DL+VD ++K+ S++ +L
Sbjct: 61 SCAVTINGEPVLACKT---EVEDGMIIEPL-DFPVIKDLIVDREPYYKKLKSLRNYLQ-- 114
Query: 674 NNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDS 733
+ E++ P + + L CI C C + CP+ + GP + Q RF D
Sbjct: 115 ---RKNEKITYPEDIEDIKKLRGCIECLSCVSTCPAR--KVSDYPGPTFMRQLARFAFDP 169
Query: 734 RDEATNFRLDNLEDPYR--LFRCRSIMNCVDTCPKGLN-PNRSINKIKEL 780
RDE D ++ + L+ C + CV+ CPK ++ P ++I K++ L
Sbjct: 170 RDEG-----DREKEAFDEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRAL 214
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 124 bits (314), Expect = 4e-30
Identities = 119/448 (26%), Positives = 186/448 (41%), Gaps = 78/448 (17%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIK 55
M A+++ G+N IL K+ +T+ A G++AS K D+ +T+K
Sbjct: 74 MSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLK 133
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G D+ + + + + L+ G+ D N TI GG S +P
Sbjct: 134 GGGGTNDKALLRYFVDNSASAIDWLDSMGIKLD---NLTIT----GGMSEKRTHRP-HDG 185
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
AV LL + +R + N + I++ +G + GV +++ +
Sbjct: 186 SAVGGYLVDGLLKNVQERKIPLFVN-----ADVTKITEKDGKVTGV-KVKINGKETKTIS 239
Query: 176 SKITILATGGGG---RIWA---------ASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
SK ++ TGG G + A +TN +TGDG+ M + G DM+ Q H
Sbjct: 240 SKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGGTTVDMDQIQIH 299
Query: 224 PTGVAGAGVLITEGVRGEGGILINSNGERFM-----------------ERYAPILKDLAP 266
PT LI E VRGEG IL+N G+RF E+YA ++ D
Sbjct: 300 PTVQQSKSYLIGEAVRGEGAILVNQKGKRFGNELDTRDKVSAAINKLPEKYAYVVFDSGV 359
Query: 267 RDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKE- 325
+D V A+ Q ++G + ++ +ET L L+ NK V K+
Sbjct: 360 KDRVK-AIAQYEEKGFVEEGKTIDELAKKINVPAET----LTKTLDTWNK--AVKNKKDE 412
Query: 326 ------------------PIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGE 367
I + P IHY MGG+ N +V+ + + GLYA GE
Sbjct: 413 AFGRTTGMDNDLSTGPYYAIKIAPGIHYTMGGVKINTNTEVL---KKDGSPITGLYAAGE 469
Query: 368 CACVSVHGANRLGTNSLLDLLVFGRSAG 395
+HG NR+G NS+ D+++FGR AG
Sbjct: 470 VTG-GLHGENRIGGNSVADIIIFGRQAG 496
>gnl|CDD|181515 PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit;
Reviewed.
Length = 249
Score = 109 bits (275), Expect = 9e-27
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 607 CREGVCGSDAMNINGKNGLACITNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSI 666
C E VCG+ +M INGK AC +++L+QPI + P+ PV+RDL VD + F +
Sbjct: 63 CLEEVCGACSMVINGKPRQACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRV 122
Query: 667 K---PFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGL 723
K P T + P R+ +R+ L +C+ CGCC ACP+ SD F+GPA +
Sbjct: 123 KAWIPIDGTYDLGP-GPRM-PEEKRQWAYELSKCMTCGCCLEACPNVNEKSD-FIGPAAI 179
Query: 724 LQAYRFISD-----SRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSI 774
Q F + ++E RL L + C + NCV CPKG+ SI
Sbjct: 180 SQVRLFNAHPTGEMHKEE----RLRALMGDGGIADCGNAQNCVRVCPKGIPLTTSI 231
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 97.0 bits (242), Expect = 6e-21
Identities = 125/535 (23%), Positives = 218/535 (40%), Gaps = 104/535 (19%)
Query: 57 SDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQR---PFGGHSSNFGEKPIA 113
+D + DQ A+ + + + + +L+ +G+ F++++ G + G +
Sbjct: 80 NDGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSY---------- 129
Query: 114 RACAVAD-RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIM 172
V GH + LY++ A+ MA L++D++G + G + + TG +
Sbjct: 130 ----VLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFL 185
Query: 173 ILESKITILATGGGGR--------IWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHP 224
++ +K IL G GR ++ N N GDG MA AG L ++E +Q +P
Sbjct: 186 VIRAKAVILCCGAAGRLGLPASGYLFGTYENPT-NAGDGYAMAYHAGAELANLECFQINP 244
Query: 225 -----TGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEI- 278
G A A V GG N+ GERF+E D+ S M E
Sbjct: 245 LIKDYNGPACAYV-----TGPLGGYTANAKGERFIE-----------CDYWSGQMMWEFY 288
Query: 279 KE-GRGCGPNKDHVMLDLRHINSETIINRLPSILEI------GNKFAN--VNALKEPIP- 328
+E G GP V L L H+ ETI + +IL G + ++ +
Sbjct: 289 QELQSGNGP----VFLKLDHLAEETIQT-IETILHTNERPSRGRFHEGRGTDYRQQMVEM 343
Query: 329 VIPTIHYQMG----GIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSL 384
I I + G G+ N + +P GLYA G+ A V N +
Sbjct: 344 HISEIGFCSGHSASGVWVNEKAETTVP---------GLYAAGDMASV--------PHNYM 386
Query: 385 LDLLVFGRSAGNHILSLELKKIHNKKLP-INSIDIIIDR---LSKLENNKGSESVQSVAN 440
L +G AG + + + + LP +++ + +R L+ L G Q V
Sbjct: 387 LGAFTYGWFAGEN----AAEYVAGRDLPEVDAAQVEAERARVLAPLHREDGLPPAQ-VEY 441
Query: 441 DIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIE 500
+R+ + +Y + + M+ G ++ + E + I +D ++ + ALE+ ++ +
Sbjct: 442 KLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLERIKARDPHEL-----MRALEVSSIRD 496
Query: 501 TAKATISSAISRKESRGAHAHN--DFKNRDDINWLKHSIWY--SNGNRIEFK-PV 550
A+ +++ R ESR H DF R+D W H+ +G + FK PV
Sbjct: 497 CAEMAARASLFRTESRWGLYHYRVDFPERNDAEWFCHTHLRKDEDGRMVSFKRPV 551
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 85.0 bits (211), Expect = 5e-17
Identities = 121/556 (21%), Positives = 199/556 (35%), Gaps = 126/556 (22%)
Query: 75 KVVYELEHFGMPFDRNKNGTIYQRPFGGHSS---NFGE--KPIARACAVADRTGHALLHT 129
VV+ E +G+P +++NG Y R G N GE KPI VA+ AL
Sbjct: 99 SVVHLFEEWGLPIWKDENGK-YVR--RGRWQIMIN-GESYKPI-----VAEAAKKALGDN 149
Query: 130 LYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGG--- 186
+ R FI DL+ D + I G V + + ++K I+ATGG
Sbjct: 150 VLNR-------VFI----TDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGI 197
Query: 187 ----------GRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPT------GVAGA 230
GR+W NTG G M RAG + E +F P G GA
Sbjct: 198 YRPRSPGEGRGRMWYPP----FNTGSGYAMGIRAGAEMTTFEN-RFIPLRFKDGYGPVGA 252
Query: 231 GVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSR--------AMDQEIKEGR 282
L +N+ GE + + A LK P A +E K GR
Sbjct: 253 WFL------LFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEENKAGR 306
Query: 283 GCGPNKDHVMLDLRHINSETIINRL---PSILEIGNKFA--NVNALKEPIPVIPTIHYQM 337
G L +H+ SE + L P +A N+ +E ++ T Y +
Sbjct: 307 GPIYMDTEEALQDKHLESELWEDFLDMTPGQA---LLWAAQNIEPEEENSEIMGTEPYIV 363
Query: 338 GG----------IPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVH----GANRLGTNS 383
G P + + + V GL+A G+ S H G+
Sbjct: 364 GSHSGASGYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGS------- 416
Query: 384 LLDLLVFGRSAGNHILS-LELKKIHNKKLPINSIDIIIDRLSK----LENNKGSESVQSV 438
GR A + + K ++ + I+ + + E K + V
Sbjct: 417 ----FAEGRIAAKAAVRYILDNKDEKPEIDDDQIEELKKEIYAPLERYEEFKDYSTDPDV 472
Query: 439 AND----------IRKTMQNYCG----VFRT-DKLMKNGYKKIMILDERRKYISFKDKSK 483
+ ++K M Y G + T +KL++ + + +L+E + ++ +D +
Sbjct: 473 NPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKLAARDLHE 532
Query: 484 IFNTARIEALELDNLIETAKATISSAISRKESR--GAHAHNDFKNRDDINWLK--HSIWY 539
+ + EL + + A+A I + RKE+R G + D+ +DD NW +S +
Sbjct: 533 L-----MRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNSRYD 587
Query: 540 SNGNRIEFKPVNLKPL 555
+ + +
Sbjct: 588 PGTGEWTIRKLPYYQI 603
>gnl|CDD|237086 PRK12386, PRK12386, fumarate reductase iron-sulfur subunit;
Provisional.
Length = 251
Score = 76.3 bits (188), Expect = 2e-15
Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 20/193 (10%)
Query: 587 LDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLN--ELKQPIIIRPLP 644
LD +HR++ L +R +C+ G CGS + ING+ L C+T ++ + + + + P+
Sbjct: 33 LDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMSTFDEDETVTVTPMR 92
Query: 645 GLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSP----SQ--RKILDGLYECI 698
PVIRDLV D++ +++ I F + P + R+Q SQ RK CI
Sbjct: 93 TFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQPGEYRMQQVDVERSQEFRK-------CI 145
Query: 699 LCGCCSTAC---PSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCR 755
C C C N F GP L++ D A R ++ + L C
Sbjct: 146 ECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTAD--RRAEAQEEHGLGYCN 203
Query: 756 SIMNCVDTCPKGL 768
C + CP+ +
Sbjct: 204 ITKCCTEVCPEHI 216
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 71.0 bits (174), Expect = 2e-12
Identities = 71/248 (28%), Positives = 99/248 (39%), Gaps = 57/248 (22%)
Query: 80 LEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRT----GHALLHTLYQR-- 133
L G+P + Q GG S K RA D T G ++ TL
Sbjct: 507 LSSLGVPLT-----VLSQ--LGGAS----RKRCHRAPDKKDGTPVPIGFTIMRTLEDHIR 555
Query: 134 -NLHAKTNFFIEWMAIDLISDSEG--------DILGVVALEME--TGNIMILESKITILA 182
L + E L+S+S + GV + +G +M L + ILA
Sbjct: 556 TKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILA 615
Query: 183 TGGGG---------RIWAA------STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGV 227
TGG R +A +TN TGDG+ +A + G L DM+ Q HPTG+
Sbjct: 616 TGGFSNDHTPNSLLREYAPQLSGFPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGL 675
Query: 228 AG-------AGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKE 280
L E +RG GG+L+N NGERF + +L R VS+A+ + E
Sbjct: 676 IDPKDPSNRTKYLGPEALRGSGGVLLNKNGERF-------VNELDLRSVVSQAIIAQGNE 728
Query: 281 GRGCGPNK 288
G G +K
Sbjct: 729 YPGSGGSK 736
Score = 59.0 bits (143), Expect = 8e-09
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 329 VIPTIHYQMGGIPTNIYGQVIIPNN-----DNNKIVNGLYAIGECACVSVHGANRLGTNS 383
V P+IHY MGG + ++ + +N ++ + + GL+ GE VHG NRLG NS
Sbjct: 825 VTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVTG-GVHGGNRLGGNS 883
Query: 384 LLDLLVFGRSAGNHILSLELKKIH 407
LL+ +VFG+ AG+ ++ KK +
Sbjct: 884 LLECVVFGKIAGDRAATILQKKKY 907
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 67.6 bits (165), Expect = 2e-11
Identities = 134/597 (22%), Positives = 232/597 (38%), Gaps = 116/597 (19%)
Query: 3 ASLQLAQEGLNVAILSKVFPTRSHTVA-AQGGISASL--GNMSKDNWHWHMFDTIKGSDY 59
A+L A+ G NV +L K S +A G++ ++ G +++ + + + +D
Sbjct: 28 AALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDY---VAEITRANDG 84
Query: 60 LGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVA 119
+ +Q + +V LE +G+ F+++++G R H S P+ V
Sbjct: 85 IVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRV--HRSGSYVLPMPEGKDVK 142
Query: 120 DRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKIT 179
AL L QR++ + M + ++++ G +G AL TG + + +K
Sbjct: 143 K----ALYRVLRQRSMRERIRIENRLMPVRVLTE-GGRAVGAAALNTRTGEFVTVGAKAV 197
Query: 180 ILATGGGGRI-----------WAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHP---- 224
ILATG GR+ + TNA GDG MA AG L +E +Q +P
Sbjct: 198 ILATGPCGRLGLPASGYLYGTYENPTNA----GDGYSMAYHAGAELSGIECFQINPLIKD 253
Query: 225 -TGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRG 283
G A A V GG +N+ GERF++ D+ S M E+K R
Sbjct: 254 YNGPACAYV-----ANPFGGYQVNAQGERFVD-----------SDYWSGQMMAEVK--RE 295
Query: 284 CGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMG----- 338
+ + L + H+ ET ++ L SIL + P T H G
Sbjct: 296 IESARGPIYLKVSHLPEET-LSALESILHTTER-----------PTRGTFHANRGHDYRT 343
Query: 339 -------------------GIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRL 379
G+ + + + +P GLYA G+ ACV H
Sbjct: 344 HDIEMHISEIGLCSGHSASGVWVDEHARTTVP---------GLYAAGDLACVP-H----- 388
Query: 380 GTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSK-LENNKGSESVQSV 438
N ++ VFG AG H + +LP + + + + + L + G Q V
Sbjct: 389 --NYMIGAFVFGDLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPDGPPQPQ-V 445
Query: 439 ANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNL 498
+R+ + +Y +T + + + + + ++ A E+ +
Sbjct: 446 EYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMGARTPHELMRCA-----EVSFI 500
Query: 499 IETAKATISSAISRKESRGA--HAHNDFKNRDDINWLKH-SIWYSNGNRIEF--KPV 550
+ A+ S+++R ESR H D RDD +W H ++ + +EF +PV
Sbjct: 501 RDCAEMAARSSLTRTESRWGLYHDRADLPERDDASWGYHLNLRKGDDGEMEFLKRPV 557
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 66.8 bits (163), Expect = 2e-11
Identities = 138/612 (22%), Positives = 221/612 (36%), Gaps = 139/612 (22%)
Query: 11 GLNVAILSKVFPTRSHTVAAQG--GISASLGNMSKDNW---HWHMFDTIKGSDYLG--DQ 63
GL + ++ K RS VA QG I+ LG +N + T D +G +
Sbjct: 26 GLKIVLVEKANLERSGAVA-QGLSAINTYLGTRFGENNAEDYVRYVRT----DLMGLVRE 80
Query: 64 DAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE--KPIARACAVADR 121
D I M + V+ E +G+P Y R GE KPI VA+
Sbjct: 81 DLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPI-----VAEA 135
Query: 122 TGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITIL 181
+AL +++R FI + +D ++ I G V + + + ++K I+
Sbjct: 136 AKNAL-GDIFER-------IFIVKLLLD--KNTPNRIAGAVGFNVRANEVHVFKAKTVIV 185
Query: 182 ATGGG-------------GRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPT--- 225
A GG GR W A N G M A+AG + ME +F P
Sbjct: 186 AAGGAVNVYRPRSVGEGAGRAWY----AVWNAGSTYTMCAQAGAEMTQMEN-RFVPARFK 240
Query: 226 ---GVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFV----------SR 272
G GA L+ + N GE + +LK R + +
Sbjct: 241 DGYGPVGAWFLLFKAKAT------NGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRNH 294
Query: 273 AMDQEIKEGRGCGPNKDHVM-----------LDLRHINSETIINRLPSILEIGNKFA--N 319
M +E++EGR GP +H+ E + L + N +A N
Sbjct: 295 MMLREMREGR--GPIYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATN 352
Query: 320 VNALKEPIPVIPTIHYQMG------GI----PTNI----YGQVIIPNNDNNKIVNGLYAI 365
V+ + ++PT Y MG GI P + Y + V GL+
Sbjct: 353 VDPEERGSEIMPTEPYLMGSHSGCCGIWVSGPEDWVPEEYKVRAAKVYNRMTTVEGLFTC 412
Query: 366 GECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSK 425
G+ S H + + S + GR A + L K D + L K
Sbjct: 413 GDGVGASPH---KFSSGSFTE----GRIAAKAAVRWILDHKDFKPE----FDATAEELKK 461
Query: 426 L--------ENNKGSESVQSVAND----------IRKTMQNYCG----VFRTDK-LMKNG 462
E K + + V + ++K M Y G + T++ L+ G
Sbjct: 462 EIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTG 521
Query: 463 YKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESR--GAHA 520
K + +L+E + ++ +D ++ + A EL + + T +A + + RKE+R G +
Sbjct: 522 LKLMAMLEEDLEKLAARDLHEL-----LRAWELYHRLWTVEAHMQHILFRKETRWPGYYY 576
Query: 521 HNDFKNRDDINW 532
DF DD NW
Sbjct: 577 RADFLGLDDENW 588
>gnl|CDD|222205 pfam13534, Fer4_17, 4Fe-4S dicluster domain. This family includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. The structure of
the domain is an alpha-antiparallel beta sandwich.
Length = 61
Score = 54.5 bits (131), Expect = 1e-09
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCR 755
CI CG C CPS+ N D P L++A N L+ L C
Sbjct: 1 RCIQCGYCVPVCPSYLLNGD---EPKKLMRAAY----------NGDLEELLANEAADSCS 47
Query: 756 SIMNCVDTCPKGLN 769
C CP GL+
Sbjct: 48 ECGLCEYVCPMGLD 61
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 668 PFLITNNNPPEKERLQSPSQRKIL----DGLYECILCGCCSTACPS 709
P + N + P+K + + + C CG C CP
Sbjct: 13 PSYLLNGDEPKKLMRAAYNGDLEELLANEAADSCSECGLCEYVCPM 58
>gnl|CDD|221963 pfam13183, Fer4_8, 4Fe-4S dicluster domain. Superfamily includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. Structure of the
domain is an alpha-antiparallel beta sandwich. Domain
contains two 4Fe4S clusters.
Length = 54
Score = 44.9 bits (106), Expect = 3e-06
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 22/76 (28%)
Query: 693 GLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLF 752
L +CI CG C CP + RF D R A L+
Sbjct: 1 ELSKCIRCGACRAVCPVY-------------RALGRFSGDPRGGALA---------AELW 38
Query: 753 RCRSIMNCVDTCPKGL 768
C S C + CP G+
Sbjct: 39 SCTSCGACTEVCPVGI 54
Score = 35.7 bits (82), Expect = 0.004
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 668 PFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPS 709
P R + L+ C CG C+ CP
Sbjct: 16 PVYRALGRFSGDPRG-----GALAAELWSCTSCGACTEVCPV 52
>gnl|CDD|181038 PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Validated.
Length = 250
Score = 47.9 bits (115), Expect = 7e-06
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 607 CREGVCGSDAMNING------KNGLACITNLNELK--QPIIIRPL--PGLPVIRDLVVDM 656
CREG+CG + ING + C ++ K I I P PVI+DLVVD
Sbjct: 58 CREGICGMCGLVINGRPHGPDRGTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDR 117
Query: 657 TLFFKQFNSIKPFLITNNNPPEKERLQSPSQR--KILDGLYECILCGCCSTACP 708
+ + + + P+ + P + + D CI CG C ACP
Sbjct: 118 SALDRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAA-ACIGCGACVAACP 170
>gnl|CDD|223325 COG0247, GlpC, Fe-S oxidoreductase [Energy production and
conversion].
Length = 388
Score = 46.5 bits (110), Expect = 3e-05
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 688 RKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLED 747
R+ + L +C+ CG C+ CPS+ + + P G I R+ + E
Sbjct: 2 RESFESLDKCVHCGFCTNVCPSY--RATEALSPRG------RIVLVREVLRGKAPGDEEV 53
Query: 748 PYRLFRCRSIMNCVDTCPKGLNPNRSINKIK 778
L C + C CP G++ I + +
Sbjct: 54 YEALDTCLACGACATACPSGIDIGDLIREAR 84
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 38.2 bits (89), Expect = 0.016
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILA 182
G AL+ + + L A + +LI +G ++GVV + ++I + +LA
Sbjct: 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVV-VRDGREVLIRARRGVLLA 264
Query: 183 TGGGGR------------IWAASTNAFI-NTGDGLGMAARAGLPLE--DMEFW---QFHP 224
+GG G TNA +TG+ + A R G L+ D +W P
Sbjct: 265 SGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAWWVPGAPLP 324
Query: 225 TGVAGAGVLITEGVRGEGGILINSNGERFMERYAP 259
G + +E + G I+++ G RF+
Sbjct: 325 NGGPRPYMHNSERSK-PGSIIVDRAGRRFVNEAGS 358
Score = 31.6 bits (72), Expect = 2.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 338 GGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTN-SLLDLLVFGRSAGN 396
GG+ T+ + +V+ ++ ++ GLYA G C SV G G S+ + VFG A
Sbjct: 489 GGLLTDEHARVL---REDGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFGYIAAL 544
Query: 397 HI 398
H
Sbjct: 545 HA 546
>gnl|CDD|205417 pfam13237, Fer4_10, 4Fe-4S dicluster domain. This family includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. The structure of
the domain is an alpha-antiparallel beta sandwich.
Length = 51
Score = 33.9 bits (77), Expect = 0.017
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 689 KILDGLYECILCGCCSTACP 708
+ CI CG C CP
Sbjct: 32 AVEIDPDRCIGCGACVEVCP 51
Score = 31.2 bits (70), Expect = 0.17
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 24/69 (34%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI CG C ACP +R A R + RC
Sbjct: 7 CIGCGRCVAACP------------------------ARVGAGAIRDEGGAVEIDPDRCIG 42
Query: 757 IMNCVDTCP 765
CV+ CP
Sbjct: 43 CGACVEVCP 51
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 584
Score = 37.9 bits (88), Expect = 0.020
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 149 DLISDSEGDILGVVALEMETGNIMILESKITILATGG---------------GGRIWAAS 193
+LI+D +G ++G V E E + I + ILATGG + W+
Sbjct: 238 ELITDPDGAVVGAVV-EREGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFG 296
Query: 194 TNAFINTGDGLGMAARAGLPLEDM-EFWQF----HPTGVAGAGVLITEGVRGEGGILINS 248
A NTGDG+ + G + + E W F P G ++ E + ++N
Sbjct: 297 NPA--NTGDGIRAGEKVGAATDLLDEAWWFPAICWPDGRMQ--FMLNERMM-PAQFIVNG 351
Query: 249 NGERFMERYAP 259
G+RF+ AP
Sbjct: 352 AGKRFINEAAP 362
>gnl|CDD|130944 TIGR01889, Staph_reg_Sar, staphylococcal accessory regulator
family. This model represents a family of
transcriptional regulatory proteins in Staphylococcus
aureus and Staphylococcus epidermidis. Some members
contain two tandem copies of this region. This family is
related to the MarR transcriptional regulator family
described by Pfam model pfam01047 [Regulatory functions,
DNA interactions].
Length = 109
Score = 35.3 bits (82), Expect = 0.021
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 20/115 (17%)
Query: 396 NHILSL-ELKKIHNKKLPINSIDIII-DRLSKLENNKGSESVQSVANDIRKTMQNYCGVF 453
+ L + LK+ K+ ++ +++I L KLENN+G +++ + +I
Sbjct: 5 SLYLYIKSLKRYLKKEFNLSLEELLILYYLGKLENNEGKLTLKEIIKEILI------KQS 58
Query: 454 RTDKLMKNGYKKIMIL------DERRKYISFKDKSKIFNTARIEAL--ELDNLIE 500
K++K KK + DER+ IS + + ++IE+L E++ +I+
Sbjct: 59 ALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQR----SKIESLISEIEQIIK 109
>gnl|CDD|236869 PRK11168, glpC, sn-glycerol-3-phosphate dehydrogenase subunit C;
Provisional.
Length = 396
Score = 37.2 bits (87), Expect = 0.028
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 677 PEKERLQSPSQRKILDGLYECILCGCCSTACPS 709
P+ ERL+ + L C C C ACPS
Sbjct: 36 PDGERLRLKDGALYDESLKYCSNCKRCEVACPS 68
Score = 29.8 bits (68), Expect = 6.5
Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 22/77 (28%)
Query: 697 CILCGCCSTACPSFWWNSD----RFVGPAGLLQAYRFISDSRDEATNFRLDN--LEDPYR 750
CI C C+TACP N + GP R RL + L D
Sbjct: 9 CIKCTVCTTACPVARVNPLYPGPKQAGP----DGER-----------LRLKDGALYDE-S 52
Query: 751 LFRCRSIMNCVDTCPKG 767
L C + C CP G
Sbjct: 53 LKYCSNCKRCEVACPSG 69
>gnl|CDD|224072 COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy
production and conversion].
Length = 195
Score = 36.2 bits (84), Expect = 0.035
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 677 PEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYR---FISDS 733
E ++ + L+G C CG C+ +CPS G Y I +
Sbjct: 24 ERTEEVKGEGRLDYLEG---CYQCGTCTGSCPS------------GRFTDYSPRKIIRKA 68
Query: 734 RDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNP 770
R L L+ C + C + CP+G+
Sbjct: 69 R---LGLVDLILSSES-LWACVTCYTCTERCPRGVKI 101
>gnl|CDD|238897 cd01916, ACS_1, Acetyl-CoA synthase (ACS), also known as acetyl-CoA
decarbonylase, is found in acetogenic and methanogenic
organisms and is responsible for the synthesis and
breakdown of acetyl-CoA. ACS forms a heterotetramer
with carbon monoxide dehydrogenase (CODH) consisting of
two ACS and two CODH subunits. CODH reduces carbon
dioxide to carbon monoxide and ACS then synthesizes
acetyl-CoA from carbon monoxide, CoA, and a methyl group
donated by another protein (CoFeSP). ACS has three
structural domains, an N-terminal rossman fold domain
with a helical region at its N-terminus which interacts
with CODH, and two alpha + beta fold domains. A Ni-Fe-S
center referred to as the A-cluster is located in the
C-terminal domain. A large cavity exists between the
three domains which may bind CoA.
Length = 731
Score = 37.0 bits (86), Expect = 0.037
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 19/108 (17%)
Query: 676 PPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRD 735
P K + P+ + + +C CG C+ ACP NS R I ++ +
Sbjct: 346 PKRKGEKKLPTDEEFQELAAKCTDCGWCTRACP----NSLR-------------IKEAME 388
Query: 736 EATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783
A L D + +C C CPK + I K I
Sbjct: 389 AAKEGDFSGLADLFD--QCVGCGRCEQECPKEIPIINMIEKAARERIK 434
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 36.9 bits (86), Expect = 0.041
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 193 STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGE-GGILINSNGE 251
+ A NTGDG+ + G L+ M+ + PT G R G I++N +G+
Sbjct: 288 TVGAKANTGDGILAGEKLGAALDLMDDAWWGPTIPLPGGPWFALSERNLPGSIIVNMSGK 347
Query: 252 RFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPN 287
RFM AP + + V E +G G G N
Sbjct: 348 RFMNESAPYV------EAVHHMYGGEYGQGPGPGEN 377
>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. This protein
contains two 4Fe-4S cluster binding domains (pfam00037)
and scores above the trusted cutoff to model pfam01058
for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
family.
Length = 228
Score = 36.0 bits (83), Expect = 0.042
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 697 CILCGCCSTACPSFWWNSD 715
CI CG C CP +W
Sbjct: 205 CIKCGACYVQCPRAFWPEY 223
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 36.0 bits (84), Expect = 0.069
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 35/126 (27%)
Query: 147 AIDLISDSEGDILGVVALEM-ETGNIMILESKITILATGG---------------GGRIW 190
A LI D +G ++GV A ET I + +LA GG G +
Sbjct: 200 ATRLIVDDDGRVVGVEARRYGETVAIRARKG--VVLAAGGFAMNREMVARYAPAYAGGLP 257
Query: 191 AASTNAFINTGDGLGMAARAGLPLEDM---EFWQFHPTGVAGAGVLITEGVRGEGGILIN 247
+T + G G+ + AG M W+F + L+ GIL+N
Sbjct: 258 LGTTG---DDGSGIRLGQSAGGATAHMDQVFAWRF----IYPPSALLR-------GILVN 303
Query: 248 SNGERF 253
+ G+RF
Sbjct: 304 ARGQRF 309
Score = 35.2 bits (82), Expect = 0.13
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 24/87 (27%)
Query: 319 NVNALKEPIPVIPTIHYQMGGIPTNI-YGQVIIPNNDNNKIVNGLYAIGECAC------- 370
+++ K P P +GG+ + G+V+ + + GLYA G CA
Sbjct: 416 DLSLGKAPTPGF-----TLGGLRVDEDTGEVL---RADGAPIPGLYAAGRCASGIASNGY 467
Query: 371 VSVHGANRLGTNSLLDLLVFGRSAGNH 397
VS G SL D FGR AG H
Sbjct: 468 VS-------GL-SLADCSFFGRRAGRH 486
>gnl|CDD|221801 pfam12838, Fer4_7, 4Fe-4S dicluster domain. Superfamily includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. Structure of the
domain is an alpha-antiparallel beta sandwich. Domain
contains two 4Fe4S clusters.
Length = 48
Score = 31.8 bits (72), Expect = 0.082
Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 23/71 (32%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI CG C ACP A + + T +C
Sbjct: 1 CIGCGACVRACPY---------------GAITLDEEGGKKGTV--------EIDPDKCTG 37
Query: 757 IMNCVDTCPKG 767
CV CP G
Sbjct: 38 CGACVAVCPTG 48
Score = 30.2 bits (68), Expect = 0.31
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 696 ECILCGCCSTACPS 709
+C CG C CP+
Sbjct: 34 KCTGCGACVAVCPT 47
>gnl|CDD|233661 TIGR01971, NuoI, NADH-quinone oxidoreductase, chain I. This model
represents the I subunit (one of 14: A->N) of the
NADH-quinone oxidoreductase complex I which generally
couples NADH and ubiquinone oxidation/reduction in
bacteria and mammalian mitochondria, but may act on
NADPH and/or plastoquinone in cyanobacteria and plant
chloroplasts. This model excludes "I" subunits from the
closely related F420H2 dehydrogenase and formate
hydrogenlyase complexes [Energy metabolism, Electron
transport].
Length = 122
Score = 33.9 bits (78), Expect = 0.087
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 28/116 (24%)
Query: 656 MTLFFKQFNSIKPFLITNNNPPEKERLQSPSQR------KILDGLYECILCGCCSTACPS 709
+ L K F S KP +T P EK L P R + +G +CI C C+ CP+
Sbjct: 2 LGLTLKYFFS-KP--VTVQYPEEKLYL-PPRFRGRIVLTRDPNGEEKCIGCTLCAAVCPA 57
Query: 710 FWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCP 765
A R + + E RL + RC C + CP
Sbjct: 58 ---------------DAIRVV-PAEGEDGKRRLKFYQ--INFGRCIFCGLCEEACP 95
>gnl|CDD|132333 TIGR03290, CoB_CoM_SS_C, CoB--CoM heterodisulfide reductase,
subunit C. The last step in methanogenesis leaves two
coenzymes of methanogenesis, CoM and CoB, linked by a
disulfide bond. Members of this protein family are the C
subunit of the enzyme that reduces the heterodisulfide
to CoB-SH and CoM-SH. Similar enzyme complex subunits
are found in various other species, but likely act on a
different substrate.
Length = 144
Score = 34.3 bits (79), Expect = 0.091
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
C CG C+ +CPS G +YR R + + + D L+ C +
Sbjct: 4 CYQCGTCTGSCPS------------GRRTSYRTRLIIRKALLGLKDEVISDD-DLWMCTT 50
Query: 757 IMNCVDTCPKGLNPNRSINKIKEL 780
C + CP+ + I ++ L
Sbjct: 51 CYTCQERCPRDVKITDIIKALRNL 74
>gnl|CDD|237222 PRK12837, PRK12837, 3-ketosteroid-delta-1-dehydrogenase;
Provisional.
Length = 513
Score = 35.2 bits (81), Expect = 0.13
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 199 NTGDGL--GMAARAGLPLEDMEFWQ---FHPTGVAGAGVLITEGVRGEGGILINSNGERF 253
NTG +A A L D +W HP G + + T GGI ++ +GERF
Sbjct: 259 NTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGRSAFALWFT------GGIFVDQHGERF 312
Query: 254 MERYAPILKDLAPRDFVSRAMDQEIKEGR 282
+ + AP D + RA+ E+ G
Sbjct: 313 -------VNESAPYDRLGRAVIAEMDSGG 334
>gnl|CDD|224074 COG1152, CdhA, CO dehydrogenase/acetyl-CoA synthase alpha subunit
[Energy production and conversion].
Length = 772
Score = 35.2 bits (81), Expect = 0.15
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 676 PPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRD 735
P K R + P + ++ +C CG C ACP N I ++ +
Sbjct: 381 PIRKGRKEKPDDEEFMEYARKCTYCGNCMRACP----NELD-------------IPEAME 423
Query: 736 EATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783
A LED + C C CPK + I K + I
Sbjct: 424 YAAKGDFSKLEDLHD--VCIGCGRCEQVCPKNIPILNMIEKAAQKRIK 469
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 34.9 bits (81), Expect = 0.16
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 694 LYECILCGCCSTACPS 709
L++CI CG C+ CPS
Sbjct: 408 LFDCIECGACAYVCPS 423
Score = 30.3 bits (69), Expect = 4.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 22/60 (36%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLL--QAYRFISDSRDEATNFRLDNLEDPYRLFRC 754
CI CG C+ AC PA LL Q Y F + + + D ++ Y LF C
Sbjct: 372 CIRCGACADAC------------PASLLPQQLYWF-AKAEE------HDKAQE-YNLFDC 411
>gnl|CDD|205077 pfam12797, Fer4_2, 4Fe-4S binding domain. This superfamily
includes proteins containing domains which bind to
iron-sulfur clusters. Members include bacterial
ferredoxins, various dehydrogenases, and various
reductases. Structure of the domain is an
alpha-antiparallel beta sandwich.
Length = 22
Score = 30.5 bits (69), Expect = 0.17
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 697 CILCGCCSTACP 708
CI CG C +ACP
Sbjct: 10 CIGCGACVSACP 21
>gnl|CDD|205920 pfam13746, Fer4_18, 4Fe-4S dicluster domain. This family includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. The structure of
the domain is an alpha-antiparallel beta sandwich.
Length = 69
Score = 31.6 bits (72), Expect = 0.18
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 703 CSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVD 762
C+ CP+ S + L+ AY F R RL ++D L C CV+
Sbjct: 2 CTYMCPTCRCQS-AMIDEDTLVVAYDFRPGGRGRPRYRRLHKVKDNEGLGDCVGCGRCVE 60
Query: 763 TCPKGLN 769
CP G++
Sbjct: 61 VCPTGID 67
>gnl|CDD|233649 TIGR01945, rnfC, electron transport complex, RnfABCDGE type, C
subunit. The six subunit complex RnfABCDGE in
Rhodobacter capsulatus encodes an apparent NADH
oxidoreductase responsible for electron transport to
nitrogenase, necessary for nitrogen fixation. A closely
related complex in E. coli, RsxABCDGE (Reducer of SoxR),
reduces the 2Fe-2S-containing superoxide sensor SoxR,
active as a transcription factor when oxidized. This
family of putative NADH oxidoreductase complexes exists
in many of the same species as the related NQR, a
Na(+)-translocating NADH-quinone reductase, but is
distinct. This model describes the C subunit [Energy
metabolism, Electron transport].
Length = 435
Score = 34.2 bits (79), Expect = 0.26
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 693 GLYECILCGCCSTACPS 709
L +CI CGCCS CPS
Sbjct: 400 NLMDCIECGCCSYVCPS 416
>gnl|CDD|224066 COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone
oxidoreductase 23 kD subunit (chain I) [Energy
production and conversion].
Length = 172
Score = 33.2 bits (76), Expect = 0.27
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 22/94 (23%)
Query: 677 PEKERLQSPSQR--KILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSR 734
PE++ SP R +LD +CI CG C+ CP+ A + R
Sbjct: 36 PEEKIPLSPRFRGRHVLD-RDKCIGCGLCANICPA---------------NAITMETAER 79
Query: 735 DEATNFRLDNLE-DPYRLFRCRSIMNCVDTCPKG 767
+ + + R C CV+ CP G
Sbjct: 80 KVDGRKKPKRPDINLGRCIFCG---LCVEVCPTG 110
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 34.1 bits (79), Expect = 0.27
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACV---SVHGANRL-GTNSLLDLLVF-G 391
+GG+ T++ +V+ + + GLYA GE A VHG N L GT L +F G
Sbjct: 485 LGGLETDLDSRVL---GADGTPLPGLYAAGEAAGFGGGGVHGYNALEGT--FLGGCIFSG 539
Query: 392 RSAG 395
R+AG
Sbjct: 540 RAAG 543
>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain.
Iron-sulfur proteins play an important role in electron
transfer processes and in various enzymatic reactions.
The family includes plant and algal ferredoxins, which
act as electron carriers in photosynthesis and
ferredoxins, which participate in redox chains (from
bacteria to mammals). Fold is ismilar to thioredoxin.
Length = 84
Score = 31.2 bits (71), Expect = 0.35
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGS 614
+ LLDA DI SCR G CG+
Sbjct: 17 GETLLDAAREAGIDI------PYSCRAGACGT 42
>gnl|CDD|129414 TIGR00314, cdhA, CO dehydrogenase/acetyl-CoA synthase complex,
epsilon subunit. Acetyl-CoA decarbonylase/synthase
(ACDS) is a multienzyme complex. Carbon monoxide
dehydrogenase is a synonym. The ACDS complex carries out
an unusual reaction involving the reversible cleavage
and synthesis of acetyl-CoA in methanogens. The model
contains the prosite signature for 4Fe-4S ferredoxins
[C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462
of the model [Energy metabolism, Chemoautotrophy].
Length = 784
Score = 33.7 bits (77), Expect = 0.44
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDN 744
P ++++ +C CG C CP + R + ++ A L
Sbjct: 389 PDDEELMELANKCTQCGNCVRTCP----------------NSLR-VDEAMAHAQKGDLSK 431
Query: 745 LEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIY 783
LE +C + C CPK + I K E +
Sbjct: 432 LEQLEE--QCYACGRCEQACPKNIPIISMITKAGEDRLK 468
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 33.6 bits (77), Expect = 0.48
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 337 MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACV---SVHGANRLGTNSLLDLLVFGRS 393
+GG+ T++ +V+ + + V GLYA GE A VHG L L + GR+
Sbjct: 487 LGGLETDLDARVL---GADGQPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRA 543
Query: 394 AGNHILS 400
AG
Sbjct: 544 AGRAAAG 550
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 32.2 bits (74), Expect = 0.51
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 402 ELKKIHNKKL-PINSIDIIIDRLSKLE-------NNKGSESVQSVANDIRKTMQNYCGVF 453
+ ++ +L PI + I L ++ + DI +
Sbjct: 36 NSETMYEDRLLPIKWLGEIRSNLREIRANLLELILTTDPAERDELLKDIEELRA------ 89
Query: 454 RTDKLMKNGYKK-IMILDERRKYISFKDKSKIFNTARIEALEL 495
DKL+K Y+K I+ +E++ + FK++ K + R + L+L
Sbjct: 90 EIDKLLKK-YEKTILTEEEKKLFNEFKEQLKAYRKVRNKVLDL 131
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 33.3 bits (77), Expect = 0.53
Identities = 49/187 (26%), Positives = 70/187 (37%), Gaps = 49/187 (26%)
Query: 111 PIARACAVADRT------GHALLHTLYQR--NLHAKTNFFIEWMAIDLISDSEGDILGVV 162
P++ A VA G AL++ LY+ L + + + L D +G +G
Sbjct: 112 PLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRY--DAPVTALELD-DGRFVGAR 168
Query: 163 ALEMETGNIMILESKITILATGG--GGRIWAAST------NAFI-----NTGDGLGMAAR 209
A G I +K +LA GG R W N + N GD L
Sbjct: 169 AGSAAGGAERI-RAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLD 227
Query: 210 AG-LPLEDMEFW-QFHPTGV-AGA----GVLITEGVRGEG---GILINSNGERF------ 253
AG + D Q H + A A G + T R + GI++N +GERF
Sbjct: 228 AGADRIGD---PSQCHAVAIDARAPLYDGGICT---RIDCVPLGIVVNRDGERFYDEGED 281
Query: 254 --MERYA 258
+RYA
Sbjct: 282 FWPKRYA 288
>gnl|CDD|215671 pfam00037, Fer4, 4Fe-4S binding domain. Superfamily includes
proteins containing domains which bind to iron-sulfur
clusters. Members include bacterial ferredoxins, various
dehydrogenases, and various reductases. Structure of the
domain is an alpha-antiparallel beta sandwich.
Length = 24
Score = 29.1 bits (66), Expect = 0.54
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 696 ECILCGCCSTACP 708
+CI CG C CP
Sbjct: 7 KCIGCGACVEVCP 19
>gnl|CDD|205078 pfam12798, Fer4_3, 4Fe-4S binding domain. This superfamily
includes proteins containing domains which bind to
iron-sulfur clusters. Members include bacterial
ferredoxins, various dehydrogenases, and various
reductases. Structure of the domain is an
alpha-antiparallel beta sandwich.
Length = 15
Score = 28.8 bits (65), Expect = 0.54
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 697 CILCGCCSTACP 708
C CG C CP
Sbjct: 1 CTGCGACVEVCP 12
>gnl|CDD|132373 TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase
proenzyme, Bacillus form. Members of this protein
family are the single chain precursor of the two chains
of the mature S-adenosylmethionine decarboxylase as
found in Methanocaldococcus jannaschii, Bacillus
subtilis, and a wide range of other species. It differs
substantially in architecture from the form as found in
Escherichia coli, and lacks any extended homology to the
eukaryotic form (TIGR00535) [Central intermediary
metabolism, Polyamine biosynthesis].
Length = 112
Score = 31.0 bits (71), Expect = 0.58
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 204 LGMAARAGLPLEDMEFWQFHPTGVAGAGVLITE 236
L A AG L F +F P GV+G VL+ E
Sbjct: 30 LEAAKVAGATLVASHFHKFSPGGVSGV-VLLAE 61
>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain.
Length = 77
Score = 29.8 bits (67), Expect = 1.0
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 24/62 (38%)
Query: 586 LLDALHRIKYDIDDSLTLRRSCREGVCGS------------------DAMNINGKNGLAC 627
LLDA DI SCR G CG+ D G LAC
Sbjct: 19 LLDAAEEAGIDI------PYSCRGGGCGTCAVKVLEGEVQSDQSFLEDDELAAGYVVLAC 72
Query: 628 IT 629
T
Sbjct: 73 QT 74
>gnl|CDD|221966 pfam13187, Fer4_9, 4Fe-4S dicluster domain.
Length = 44
Score = 28.8 bits (64), Expect = 1.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 695 YECILCGCCSTACP 708
+CI CG C CP
Sbjct: 27 VKCIGCGACVEVCP 40
>gnl|CDD|235637 PRK05888, PRK05888, NADH dehydrogenase subunit I; Provisional.
Length = 164
Score = 31.0 bits (71), Expect = 1.3
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 30/80 (37%)
Query: 692 DGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDE----ATNFRLDNLED 747
+G CI C C+ CP+ A + R++ T + ++
Sbjct: 55 NGEERCIACKLCAAICPA---------------DAITIEAAEREDGRRRTTRYDIN---- 95
Query: 748 PYRLFRCRSIM--NCVDTCP 765
RC I C + CP
Sbjct: 96 ---FGRC--IFCGFCEEACP 110
>gnl|CDD|132354 TIGR03311, Se_dep_Molyb_1, selenium-dependent molybdenum
hydroxylase 1. Members of this protein family show full
length homology to the molybdenum-containing aldehyde
oxido-reductase of Desulfovibrio gigas. Members,
however, are found only within species that have, and
near those genes that encode, a set of predicted
accessory proteins for selenium-dependent molybdenum
hydroxylases. The best known examples of such enzymes
are forms of xanthine dehydrogenase and purine
hydroxylase; this family appears to be another such
enzyme.
Length = 848
Score = 32.1 bits (73), Expect = 1.4
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 574 KFLVN----LSSNDKMLLDALHRIKYDIDDSLT-LRRSCREGVCGSDAMNINGKNGLACI 628
+F+VN + +K LL+ L D LT ++ C EG CG+ + +NGK AC
Sbjct: 2 EFIVNGREVDVNEEKKLLEFLRE-----DLRLTGVKNGCGEGACGACTVIVNGKAVRACR 56
Query: 629 TNLNEL 634
+L
Sbjct: 57 FTTAKL 62
>gnl|CDD|233255 TIGR01061, parC_Gpos, DNA topoisomerase IV, A subunit,
Gram-positive. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason [DNA metabolism, DNA replication,
recombination, and repair].
Length = 738
Score = 32.1 bits (73), Expect = 1.5
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 418 IIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYIS 477
I+ RL +L N E ++ N++ K + + + ++K KK + E +K +
Sbjct: 416 IVSLRLYRLTNTDIFE-LKEEQNELEKKIISLEQIIASEKARNKLLKKQLE--EYKKQFA 472
Query: 478 FKDKSKIFNTARIEALELDNLI--ETAKATISSA--ISR--KESRGAHAHNDFKNRDDIN 531
+ +S+I + + LI E I+ A I R S + + DF ++DD
Sbjct: 473 QQRRSQIEDFINQIKINESELIENEDYYVLITKAGYIKRTSNRSFASSKYTDFGSKDDDI 532
Query: 532 WLKHSI 537
+I
Sbjct: 533 LFAQTI 538
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 31.8 bits (73), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 9/36 (25%)
Query: 197 FINTGDGLGMA---------ARAGLPLEDMEFWQFH 223
F++ +GL MA AR GL L+D +F++ H
Sbjct: 300 FVHGKEGLLMAPAYAVPRLLARNGLTLQDFDFYEIH 335
>gnl|CDD|183492 PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur
subunit; Provisional.
Length = 180
Score = 30.8 bits (70), Expect = 2.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 697 CILCGCCSTACPS 709
CI C C ACPS
Sbjct: 40 CIGCAACVNACPS 52
>gnl|CDD|233895 TIGR02494, PFLE_PFLC, glycyl-radical enzyme activating protein
family. This subset of the radical-SAM family
(pfam04055) includes a number of probable activating
proteins acting on different enzymes all requiring an
amino-acid-centered radical. The closest relatives to
this family are the pyruvate-formate lyase activating
enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic
ribonucleotide reductase activating enzyme (TIGR02491).
Included within this subfamily are activators of
hydroxyphenyl acetate decarboxylase (HdpA, ),
benzylsuccinate synthase (BssD, ), gycerol dehydratase
(DhaB2,) as well as enzymes annotated in E. coli as
activators of different isozymes of pyruvate-formate
lyase (PFLC and PFLE) however, these appear to lack
characterization and may activate enzymes with
distinctive functions. Most of the sequence-level
variability between these forms is concentrated within
an N-terminal domain which follows a conserved group of
three cysteines and contains a variable pattern of 0 to
8 additional cysteines.
Length = 295
Score = 30.8 bits (70), Expect = 2.4
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 26/85 (30%)
Query: 686 SQRKILDGLY---ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRL 742
SQRK + L+ C+ CG C CP G A L ++D R+ R
Sbjct: 36 SQRKSPELLFKENRCLGCGKCVEVCP---------AGTARLS----ELADGRNRIIIRRE 82
Query: 743 DNLEDPYRLFRCRSIMNCVDTCPKG 767
+C C + CP G
Sbjct: 83 ----------KCTHCGKCTEACPSG 97
>gnl|CDD|143519 cd06961, NR_DBD_TR, DNA-binding domain of thyroid hormone receptors
(TRs) is composed of two C4-type zinc fingers.
DNA-binding domain of thyroid hormone receptors (TRs) is
composed of two C4-type zinc fingers. Each zinc finger
contains a group of four Cys residues which co-ordinates
a single zinc atom. TR interacts with the thyroid
response element, which is a DNA site with direct
repeats of the consensus sequence 5'-AGGTCA-3' separated
by one to five base pairs, upstream of target genes and
modulates the rate of transcriptional initiation.
Thyroid hormone receptor (TR) mediates the actions of
thyroid hormones, which play critical roles in growth,
development, and homeostasis in mammals. They regulate
overall metabolic rate, cholesterol and triglyceride
levels, and heart rate, and affect mood. TRs are
expressed from two separate genes (alpha and beta) in
human and each gene generates two isoforms of the
receptor through differential promoter usage or
splicing. TRalpha functions in the heart to regulate
heart rate and rhythm and TRbeta is active in the liver
and other tissues. The unliganded TRs function as
transcription repressors, by binding to thyroid hormone
response elements (TRE) predominantly as homodimers, or
as heterodimers with retinoid X-receptors (RXR), and
being associated with a complex of proteins containing
corepressor proteins. Ligand binding promotes
corepressor dissociation and binding of a coactivator to
activate transcription. Like other members of the
nuclear receptor (NR) superfamily of ligand-activated
transcription factors, TR has a central well conserved
DNA binding domain (DBD), a variable N-terminal domain,
a flexible hinge and a C-terminal ligand binding domain
(LBD).
Length = 85
Score = 28.9 bits (65), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 441 DIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRK 474
+I K +N C R K + G K ++LD+R++
Sbjct: 45 EIDKVTRNQCQECRFKKCIAVGMAKDLVLDDRKR 78
>gnl|CDD|181399 PRK08348, PRK08348, NADH-plastoquinone oxidoreductase subunit;
Provisional.
Length = 120
Score = 29.4 bits (66), Expect = 2.8
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 32/95 (33%)
Query: 677 PEKERLQSPS--QRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSR 734
P E + P + KIL + +C+ C C T CP AG + ++ + R
Sbjct: 22 PATEPVPVPEDFRGKILYDVDKCVGCRMCVTVCP------------AG---VFVYLPEIR 66
Query: 735 DEATNFRLDNLEDPYRLFRCRSIM--NCVDTCPKG 767
L+ R + CVD CP G
Sbjct: 67 K-------------VALWTGRCVFCGQCVDVCPTG 88
>gnl|CDD|129492 TIGR00397, mauM_napG, MauM/NapG family ferredoxin-type protein.
MauM is involved in methylamine utilization. NapG is
associated with nitrate reductase activity. The two
proteins are highly similar [Energy metabolism, Electron
transport].
Length = 213
Score = 30.3 bits (68), Expect = 3.0
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 670 LITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRF 729
L+ + L+ P D L C+ CG C AC P +L +
Sbjct: 28 LLRSRPAVAARVLRPPGALPEQDFLAACVRCGLCVEAC------------PYDILSLASW 75
Query: 730 ISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKG-LNP 770
SD T F E P R+ C+ I C CP G L+P
Sbjct: 76 -SDPAPLGTPF-FTPREVPCRM--CKDI-PCARACPTGALDP 112
>gnl|CDD|224062 COG1139, COG1139, Uncharacterized conserved protein containing a
ferredoxin-like domain [Energy production and
conversion].
Length = 459
Score = 30.8 bits (70), Expect = 3.0
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 17/91 (18%)
Query: 697 CILCGCCSTACPSF-----WWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRL 751
CI CG C CP + + GP G S D D
Sbjct: 310 CIRCGACLNHCPVYRHIGGHAYGSIYPGPIG-----VVWS-----PILGGYDAAGDL--P 357
Query: 752 FRCRSIMNCVDTCPKGLNPNRSINKIKELMI 782
+ C C + CP + I K++ +
Sbjct: 358 YACSLCGACTEVCPVKIPLPELIRKLRRVAA 388
>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional.
Length = 312
Score = 30.6 bits (70), Expect = 3.3
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 3 ASLQLAQE-GLNVAILSKVFPTRSH 26
L AQ G++ A+LS V PT SH
Sbjct: 237 EELARAQRLGVDFAVLSPVQPTASH 261
>gnl|CDD|132422 TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase,
anaerobic, C subunit. Members of this protein family
are the membrane-anchoring, non-catalytic C subunit,
product of the glpC gene, of a three-subunit,
FAD-dependent, anaerobic glycerol-3-phosphate
dehydrogenase. GlpC lasks classical hydrophobic
transmembrane helices; Cole, et al suggest interaction
with the membrane may involve amphipathic helices. GlcC
has conserved Cys-containing motifs suggestive of
iron-sulfur binding. This complex is found mostly in
Escherichia coli and closely related species [Energy
metabolism, Anaerobic].
Length = 397
Score = 30.5 bits (69), Expect = 4.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 677 PEKERLQSPSQRKILDGLYECILCGCCSTACPS 709
P+ ERL+ S + L C C C ACPS
Sbjct: 34 PDGERLRLKSAELYDEALKYCTNCKRCEVACPS 66
>gnl|CDD|222168 pfam13484, Fer4_16, 4Fe-4S double cluster binding domain.
Length = 67
Score = 27.5 bits (61), Expect = 4.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPA-GLLQAYRFISDSRDEATNFRLDNLE--DPYRLFR 753
C CG C+ ACP + G A R IS + + +D L+ R++
Sbjct: 2 CGTCGKCADACP-----TGAISGEDEPTWDARRCISYNTIGKKGWIIDELKCLLGGRIYG 56
Query: 754 CRSIMNCVDTCP 765
C C + CP
Sbjct: 57 C---GICQEVCP 65
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 29.1 bits (66), Expect = 4.5
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 458 LMKNGYKKIM-ILDERRKYISFKDKS----------------KIFNTARIEALELDNLIE 500
L+ GYK + ILDER++ I+ K + AR EA E +I
Sbjct: 16 LIYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASE---IIN 72
Query: 501 TAKATISSAISRKESRGA 518
AK +
Sbjct: 73 NAKKEAQKLKEEILAEAQ 90
>gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit,
predominant form. Bacteria have a single DNA-directed
RNA polymerase, with required subunits that include
alpha, beta, and beta-prime. This model describes the
predominant architecture of the beta-prime subunit in
most bacteria. This model excludes from among the
bacterial mostly sequences from the cyanobacteria, where
RpoC is replaced by two tandem genes homologous to it
but also encoding an additional domain [Transcription,
DNA-dependent RNA polymerase].
Length = 1140
Score = 30.0 bits (68), Expect = 5.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 193 STNAFINTGDGLG-MAARA-GLPLEDMEFWQFHPTGVAGAGVLITEG 237
+T + G+ +G +AA++ G P + FH GVAGA IT+G
Sbjct: 863 ATGKLVEIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGASGDITQG 909
>gnl|CDD|233993 TIGR02745, ccoG_rdxA_fixG, cytochrome c oxidase accessory protein
FixG. Member of this ferredoxin-like protein family are
found exclusively in species with an operon encoding the
cbb3 type of cytochrome c oxidase (cco-cbb3), and near
the cco-cbb3 operon in about half the cases. The
cco-cbb3 is found in a variety of proteobacteria and
almost nowhere else, and is associated with oxygen use
under microaerobic conditions. Some (but not all) of
these proteobacteria are also nitrogen-fixing, hence the
gene symbol fixG. FixG was shown essential for
functional cco-cbb3 expression in Bradyrhizobium
japonicum.
Length = 434
Score = 30.0 bits (68), Expect = 5.5
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 690 ILDGL-YECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDP 748
I DGL ECI CG C AC ++ P GL IS + + A R
Sbjct: 249 IRDGLQLECINCGLCIDACDDV---MEKMGKPKGL------ISYTSEAALEGR-----KK 294
Query: 749 YRLFRCRSIM 758
RL R R+I
Sbjct: 295 VRLLRPRTIG 304
>gnl|CDD|181301 PRK08222, PRK08222, hydrogenase 4 subunit H; Validated.
Length = 181
Score = 29.3 bits (66), Expect = 5.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 696 ECILCGCCSTACPS 709
+CI CG C+ ACP+
Sbjct: 39 QCIACGACTCACPA 52
>gnl|CDD|182135 PRK09898, PRK09898, hypothetical protein; Provisional.
Length = 208
Score = 29.4 bits (66), Expect = 5.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 696 ECILCGCCSTACPS 709
+C+LCG C+ ACP+
Sbjct: 182 KCVLCGECANACPT 195
>gnl|CDD|224068 COG1145, NapF, Ferredoxin [Energy production and conversion].
Length = 99
Score = 28.0 bits (61), Expect = 6.1
Identities = 14/75 (18%), Positives = 18/75 (24%), Gaps = 29/75 (38%)
Query: 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFR-- 753
+CI CG C CP A + L P +
Sbjct: 30 KCIGCGLCVKVCP--------------------------TGAIELIEEGLLLPEVVIDPD 63
Query: 754 -CRSIMNCVDTCPKG 767
C C+ CP
Sbjct: 64 LCVLCGACLKVCPVD 78
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 29.5 bits (67), Expect = 6.6
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 170 NIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAG 229
+ E+ I+ATGG + TGDG +A G + P V
Sbjct: 143 SGGEYEADKVIIATGGLS---YPQLGS---TGDGYEIAESLGHTIVP-----PVPALV-- 189
Query: 230 AGVLITE-------GVRGEGGILINSNGERFMERYAPIL 261
+ + E G+ +G +L NG++ +E + +L
Sbjct: 190 -PLTLDESFLKELSGISLDGVVLSLVNGKKVLEEFGDLL 227
>gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze
analogous reactions and share a common activator, the
metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad
range of substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
subfamily are bacterial, and have been inferred by
homology as being related to both ArgE and DapE.
Length = 342
Score = 29.6 bits (67), Expect = 7.1
Identities = 42/152 (27%), Positives = 57/152 (37%), Gaps = 28/152 (18%)
Query: 491 EALE-LDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINW--LKHSIWYSNGNRIEF 547
EA+E L LI T + SR+E A +F + I ++IW NG+ E
Sbjct: 2 EAIELLKKLIST------PSFSREEDETADLIENFLEQKGIPPKRKGNNIWAKNGHFDEG 55
Query: 548 KPVNLKPLTVKTVHPKKHHDIKPYMQKF----LVNLSSND------KMLLDALH-RIKYD 596
KP L TV P P+ L L SND +L LH +
Sbjct: 56 KPTILLNSHHDTVKPNAGWTRDPFEPVEEGGKLYGLGSNDAGASLVSLLATFLHLYSEGP 115
Query: 597 IDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628
+ +L S E I+GKNGL +
Sbjct: 116 LKYNLIFAASAEE--------EISGKNGLESL 139
>gnl|CDD|132141 TIGR03097, PEP_O_lig_1, probable O-glycosylation ligase, exosortase
A-associated. These proteins are members of the
O-antigen polymerase (wzy) family described by
pfam04932. This group is associated with genomes and
ususally genomic contexts containing elements of the
exosortase/PEP-CTERM protein export system ,
specificially the type 1 variety of this system
described by the Genome Property, GenProp0652.
Length = 402
Score = 29.7 bits (67), Expect = 7.3
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 13/76 (17%)
Query: 179 TILATGGGGRIWAASTNAFINTGDGLGMAARAGLPL------EDMEFWQFHPTGVAGAGV 232
T+L TGG R+W +FI + L +A LPL + WQ H +A +
Sbjct: 147 TLL-TGGNFRVWGPPG-SFIADNNHLALALIMTLPLLRYLHLQLARPWQRH--LLAVTML 202
Query: 233 LITEGVRG---EGGIL 245
L V G G +L
Sbjct: 203 LTVISVLGSYSRGALL 218
>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional.
Length = 340
Score = 29.3 bits (66), Expect = 7.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 10/34 (29%)
Query: 583 DKMLLDALHR--IKYDIDDSLTLRRSCREGVCGS 614
D++LLDA R I +D CREGVCG+
Sbjct: 22 DELLLDAALRNGINLPLD--------CREGVCGT 47
>gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A. This model
describes iron-only hydrogenases of anaerobic and
microaerophilic bacteria and protozoa. This model is
narrower, and covers a longer stretch of sequence, than
pfam02906. This family represents a division among
families that belong to pfam02906, which also includes
proteins such as nuclear prelamin A recognition factor
in animals. Note that this family shows some
heterogeneity in terms of periplasmic, cytosolic, or
hydrogenosome location, NAD or NADP dependence, and
overal protein protein length.
Length = 374
Score = 29.2 bits (66), Expect = 8.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 696 ECILCGCCSTACP 708
CI CG CS CP
Sbjct: 51 NCIGCGQCSLVCP 63
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,435,020
Number of extensions: 4062126
Number of successful extensions: 4110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 145
Length of query: 786
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 681
Effective length of database: 6,280,432
Effective search space: 4276974192
Effective search space used: 4276974192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)