RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9575
(786 letters)
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 962 bits (2490), Expect = 0.0
Identities = 307/566 (54%), Positives = 400/566 (70%), Gaps = 2/566 (0%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
MRA+LQ++Q G A+LSKVFPTRSHTV+AQGGI+ +LGN +DNW WHM+DT+KGSDY+
Sbjct: 20 MRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
GDQDAIE+MCK P+ + ELEH G+PF R +G IYQRPFGG S NFG + AR A AD
Sbjct: 80 GDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD 139
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
RTGHALLHTLYQ+NL T F EW A+DL+ + +G ++G AL +ETG ++ +++ T+
Sbjct: 140 RTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATV 199
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240
LATGG GRI+ ++TNA INTGDG+GMA RAG+P++DME WQFHPTG+AGAGVL+TEG RG
Sbjct: 200 LATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRG 259
Query: 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGC-GPNKDHVMLDLRHIN 299
EGG L+N +GERFMERYAP KDLA RD V+R++ EI+EGRGC GP H L L H+
Sbjct: 260 EGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLG 319
Query: 300 SETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPN-NDNNKI 358
E + +RLP ILE+ FA+V+ +KEPIPVIPT HY MGGIPT + GQ + N + +
Sbjct: 320 KEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVV 379
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
V GL+A+GE ACVSVHGANRLG NSLLDL+VFGR+AG H+ ++ + + ++
Sbjct: 380 VPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEA 439
Query: 419 IIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISF 478
+DRL++ NN+ E ++ +++ MQ+ VFR M G +++ ++ ER K
Sbjct: 440 SLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARL 499
Query: 479 KDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIW 538
D S FNT R+E LELDNL+ETA AT SA R ESRGAH+ DF +RDD NWL HS++
Sbjct: 500 DDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLY 559
Query: 539 YSNGNRIEFKPVNLKPLTVKTVHPKK 564
+ + VN++P PK
Sbjct: 560 LPESESMTRRSVNMEPKLRPAFPPKI 585
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 948 bits (2452), Expect = 0.0
Identities = 290/589 (49%), Positives = 379/589 (64%), Gaps = 26/589 (4%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+RA+ L++ G N A ++K+FPTRSHTVAAQGGI+A+LGNM DNW WH +DT+KGSD+L
Sbjct: 31 LRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWL 90
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGE-KPIARACAVA 119
GDQDAI +M ++AP V ELE++GMPF R + G IYQR FGG S FG+ R C VA
Sbjct: 91 GDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVA 150
Query: 120 DRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKIT 179
DRTGH+LLHTLY R+L T++F+E+ A+DL+ + G+ GV+AL +E G I +K T
Sbjct: 151 DRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNT 209
Query: 180 ILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVR 239
++ATGG GR + + T+A +TGDG M RAGLP +D+EF QFHPTG+ GAG LITEG R
Sbjct: 210 VIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCR 269
Query: 240 GEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHIN 299
GEGGILINS GERFMERYAP+ KDLA RD VSR+M EI+EGRGCGP KDHV L L H+
Sbjct: 270 GEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPEKDHVYLQLHHLP 329
Query: 300 SETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIV 359
+ + RLP I E FA V+ KEPIPV+PT+HY MGGIPTN GQVI N +K+V
Sbjct: 330 PQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVITHVNGEDKVV 389
Query: 360 NGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDII 419
GLYA GE A SVHGANRLG NSLLDL+VFGR+ I + N+ +
Sbjct: 390 PGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAETCKPGEPVPSIKPNAGEES 449
Query: 420 IDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFK 479
+ L KL G+ +++KTMQ++ VFRT +++ G +K+ + ++
Sbjct: 450 VANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGSILQEGCEKLSQIYRDLAHLKTF 509
Query: 480 DKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDI--------- 530
D+ ++NT +E LEL NL+ A TI A +RKESRGAHA D+K R D
Sbjct: 510 DRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKLRIDEFDYSKPLQG 569
Query: 531 --------NWLKHSIWYSNGN----RIEFKPVNLKPLT---VKTVHPKK 564
+W KH++ Y + ++++PV + L +V P
Sbjct: 570 QQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDRTLNEEDCSSVPPAI 618
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 897 bits (2320), Expect = 0.0
Identities = 195/590 (33%), Positives = 295/590 (50%), Gaps = 39/590 (6%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK---DNWHWHMFDTIKGS 57
+RA++ Q+GL+ +LS + RSH+ AAQGG+ ASLGN DN H DT+KGS
Sbjct: 18 LRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGS 77
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNG-----------TIYQRPFGG---H 103
D+ DQ APK + EL +G+P+ R G TI + F H
Sbjct: 78 DWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIH 137
Query: 104 SSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVA 163
S +FG R C AD TGH +L + L + AI LI +G G V
Sbjct: 138 SRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVV 196
Query: 164 LEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLP-LEDMEFWQF 222
++ TG+I+ +K T++ATGG GRI+ +TNA + G G +A G+ L +ME QF
Sbjct: 197 RDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQF 256
Query: 223 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGR 282
HPT + +G+L+TEG RG+GGIL + +G RFM Y P K+LA RD VSR M + I++G+
Sbjct: 257 HPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGK 316
Query: 283 GC-GPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIP 341
G P H+ LD+ + + I L + EI FA ++ ++ PV+P HY MGGI
Sbjct: 317 GVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIR 376
Query: 342 TNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHI--L 399
T+ G+ + GL++ GE AC +HG NRLG NS+ + +V G G +
Sbjct: 377 TDYRGEAKLK---------GLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH 427
Query: 400 SLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLM 459
+ K + + L +KG+E V + N ++ M + G+FR +
Sbjct: 428 CANTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHL 487
Query: 460 KNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAH 519
+ K++ L ++ K + K+K N EA + +++ A A+ R ESRGAH
Sbjct: 488 EKAVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGAH 547
Query: 520 AHNDFKNRDDINWLKHSIWYSNGN-----RIEFKPVNLKPLTVKTVHPKK 564
D+ RDDINWL ++ +E++ +++ + + P
Sbjct: 548 NREDYPKRDDINWLNRTLASWPNPEQTLPTLEYEALDVNEMEIA---PGY 594
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 878 bits (2272), Expect = 0.0
Identities = 221/585 (37%), Positives = 332/585 (56%), Gaps = 45/585 (7%)
Query: 1 MRASLQLAQEG--LNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSD 58
+RA++ AQ +A++SKV+P RSHTVAA+GG +A + D++ +H DT+ G D
Sbjct: 18 LRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDH--DSFEYHFHDTVAGGD 75
Query: 59 YLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
+L +QD +++ P + +LE +G P+ R +G++ R FGG I R
Sbjct: 76 WLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMK-------IERTWFA 128
Query: 119 ADRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESK 177
AD+TG +LHTL+Q +L + F E +D++ D +G + G+VA+ M G ++ + +
Sbjct: 129 ADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN 187
Query: 178 ITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEG 237
++ATGG GR++ +TN I TGDG+GMA G+PL DMEF Q+HPTG+ G+G+L+TEG
Sbjct: 188 AVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTEG 247
Query: 238 VRGEGGILINSNGERFMERYAPIL-----------KDLAPRDFVSRAMDQEIKEGRGCG- 285
RGEGGIL+N NG R+++ Y +L PRD VS+A E ++G
Sbjct: 248 CRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIST 307
Query: 286 PNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIY 345
P D V LDLRH+ + + RLP I E+ + V+ +KEPIPV PT HY MGGI T+
Sbjct: 308 PRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQN 367
Query: 346 GQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS-LELK 404
+ I GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG
Sbjct: 368 CETRIK---------GLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATA 418
Query: 405 KIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYK 464
N+ + RL L N G E+ + +++ M+ CG++RT +LM+
Sbjct: 419 GNGNEAAIEAQAAGVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTID 478
Query: 465 KIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHND- 523
K+ L ER K + D S +FNT + +EL + + A+ SA++RKESRGAH D
Sbjct: 479 KLAELQERFKRVRITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDE 538
Query: 524 -FKNRDDINWLKHSIWYSNGN---RIEFKPVNLKPLTVKTVHPKK 564
RDD+N+LKH++ + + + R+E+ V + T+ P K
Sbjct: 539 GCTERDDVNFLKHTLAFRDADGTTRLEYSDV-----KITTLPPAK 578
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 652 bits (1683), Expect = 0.0
Identities = 112/632 (17%), Positives = 211/632 (33%), Gaps = 97/632 (15%)
Query: 1 MRASLQLA----QEGLNVAILSKVFPTRSHTVAAQG-GISASLGNMSKDNWHWHM----F 51
A+ + A GL V ++ K RS VA I+ + + +
Sbjct: 35 CGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVR 94
Query: 52 DTIKGSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKP 111
L +D + + V+ E +G+P + +G Y R GE
Sbjct: 95 YVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESY 153
Query: 112 IA-RACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGD--ILGVVALEMET 168
A A G N + +L+ D+ + G V +
Sbjct: 154 KPIIAEAAKMAVGEE--------------NIYERVFIFELLKDNNDPNAVAGAVGFSVRE 199
Query: 169 GNIMILESKITILATGGGGRIWAASTN---------AFINTGDGLGMAARAGLPLEDMEF 219
+ ++K ILATGG ++ + A +TG G M +AG L E
Sbjct: 200 PKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQFEH 259
Query: 220 WQFHPTGVAGAGVLITEGVRGEGGILINSNGERF-------MERYAP-ILKDLAPRDFVS 271
+F P + N+ GE + +E+Y P P +
Sbjct: 260 -RFIPFRFKDGYGPVGAWFLFFKCKAKNAYGEEYIKTRAAELEKYKPYGAAQPIPTPLRN 318
Query: 272 RAMDQEIKEGRG-CGPNKDHVM--------LDLRHINSETIINRLPSILEIGNKFA--NV 320
+ EI +G + + + L+HI E + L + +A N+
Sbjct: 319 HQVMLEIMDGNQPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWACQNI 378
Query: 321 NALKEPIPVIPTIHYQMGGIPTNIYGQVIIP--------------NNDNNKIVNGLYAIG 366
+ ++P P Y MG V P + V GL+AIG
Sbjct: 379 DPQEQPSEAAPAEPYIMGSHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIG 438
Query: 367 ECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKL 426
+CA + H + + S + + ++A IL + + + + +
Sbjct: 439 DCAGANPH---KFSSGSFTEGRIAAKAAVRFILEQKPNPEIDDAVVEELKKKAYAPMERF 495
Query: 427 ENNKGSESVQSVAND----------IRKTMQNYCG----VFRT-DKLMKNGYKKIMILDE 471
K + V + ++K M Y +++T +K+++ + + L E
Sbjct: 496 MQYKDLSTADDVNPEYILPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKE 555
Query: 472 RRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESR--GAHAHNDFKNRDD 529
+ ++ +D + + A EL + + TA+A + + RKE+R G + D+ +D
Sbjct: 556 DLEKLAARDLHE-----LMRAWELVHRVWTAEAHVRHMLFRKETRWPGYYYRTDYPELND 610
Query: 530 INWLKH--SIWYSNGNRIEFKPVNLKPLTVKT 559
W S + + + F+ V + +
Sbjct: 611 EEWKCFVCSKYDAEKDEWTFEKVPYVQVIEWS 642
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 535 bits (1380), Expect = 0.0
Identities = 104/638 (16%), Positives = 205/638 (32%), Gaps = 104/638 (16%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNM-------SKDNWHWHMFDT 53
A+ + + A +K+ ++ G ++ L + + D++ +
Sbjct: 35 CGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTD 94
Query: 54 IKGSDYLGDQDAIEFMCKEAPKVVYELEHFGMP-FDRNKNGTIY---QRPFGGHSSNFGE 109
L +D I + + V+ E +G+P + ++++G Q G S G+
Sbjct: 95 ---LMGLVREDLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGD 151
Query: 110 KPIARACAVADRTGHALLHTLYQ--RNLHAKTNFFIEWMAIDLISD--SEGDILGVVALE 165
KP+ G + + + +N + + L+ D + I G V
Sbjct: 152 KPVRSGRWQIMINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFN 211
Query: 166 METGNIMILESKITILATGGGGRIW---------AASTNAFINTGDGLGMAARAGLPLED 216
+ + I ++ ++A GG ++ + N G M A+ G +
Sbjct: 212 LRANEVHIFKANAMVVACGGAVNVYRPRSVGEGMGRAWYPVWNAGSTYTMCAQVGAEMTM 271
Query: 217 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILK----------DLAP 266
ME +F P + N GE + +LK + P
Sbjct: 272 MEN-RFVPARFKDGYGPVGAWFLLFKAKATNCKGEDYCATNRAMLKPYEERGYAKGHVIP 330
Query: 267 RDFVSRAMDQEIKEGRGC----------GPNKDHVMLDLRHINSETIINRLPSILEIGNK 316
+ M +E++EGRG +H+ +E + L + N
Sbjct: 331 TCLRNHMMLREMREGRGPIYMDTKTALQTSFATMSPAQQKHLEAEAWEDFLDMCVGQANL 390
Query: 317 FA--NVNALKEPIPVIPTIHYQMGG----------------IPTNIYGQVIIPNNDNN-K 357
+A N + ++PT Y +G +P + + N
Sbjct: 391 WAATNCAPEERGSEIMPTEPYLLGSHSGCCGIWASGPDEAWVPEDYKVRAANGKVYNRMT 450
Query: 358 IVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSID 417
V GL+ + S H G++ GR G ++ L K + + +
Sbjct: 451 TVEGLWTCADGVGASGHKF-SSGSH------AEGRIVGKQMVRWYLDHKDFKPEFVETAE 503
Query: 418 ----IIIDRLSKLENNKGSESVQSVAND----------IRKTMQNYCGVFRT-----DKL 458
+I E KG+ + V + + K Y G T L
Sbjct: 504 ELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIKCTDEYGGGVGTYYNTSKAL 563
Query: 459 MKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESR-- 516
+ G+ + +L+E ++ +D ++ + E + + T + + R+ESR
Sbjct: 564 LDTGFWLMEMLEEDSLKLAARDLHEL-----LRCWENYHRLWTVRLHMQHIAFREESRYP 618
Query: 517 GAHAHNDFKNRDDINWLKHSIWYSNGN----RIEFKPV 550
G + DF DD W + +I KP
Sbjct: 619 GFYYRADFLGLDDSKWKCFVNSKYDPAKKETKIFKKPY 656
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 463 bits (1195), Expect = e-157
Identities = 150/544 (27%), Positives = 222/544 (40%), Gaps = 93/544 (17%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ A + L + G L T A+GG++AS+G+ D+ H DTI+ D L
Sbjct: 12 LSAGVALRRAG-KKVTLISKRIDGGSTPIAKGGVAASVGS--DDSPELHAQDTIRVGDGL 68
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
D + ++ EA V+ E +G F+ + R GGH+ R D
Sbjct: 69 CDVKTVNYVTSEAKNVIETFESWGFEFEED------LRLEGGHTKR-------RVLHRTD 115
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
TG + + L + + + + D G + G V + + + +
Sbjct: 116 ETGREIFNFLLKLAREEGIPIIEDRLVEIRVKD--GKVTGFVTEKRGL----VEDVDKLV 169
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTG--VAGAGVLITEGV 238
LATGG ++ S+ N GDG+ +A +AG L DMEF QFHPT + G L+TE +
Sbjct: 170 LATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGEVFLLTETL 229
Query: 239 RGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLRHI 298
RGEG +IN NGERF+ Y +LAPRD +SRA+ E+ +G V +DL I
Sbjct: 230 RGEGAQIINENGERFLFNYDK-RGELAPRDILSRAIYIEMLKG-------HKVFIDLSKI 281
Query: 299 NSETIINRLPSI----LEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNND 354
E + P + G N K IP+ P H+ GGI NI G+ I
Sbjct: 282 --EDFERKFPVVAKYLARHG-----HN-YKVKIPIFPAAHFVDGGIRVNIRGESNIV--- 330
Query: 355 NNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPIN 414
LYAIGE + +HGANRL +NSLL+ LVFG + ++ S + + +
Sbjct: 331 ------NLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDSSWEGISTDDGIVHS 384
Query: 415 SIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRK 474
LS E IR+ G+ R ++ +
Sbjct: 385 VRISGNKTLSLKE--------------IRRINWENVGIIRNEEKLVKAINTY-------- 422
Query: 475 YISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLK 534
+ N + T +A RKESRG H D+ +D NW K
Sbjct: 423 -----------------SSSTQNEAIISYLTALAAEIRKESRGNHFREDYPYKDP-NWEK 464
Query: 535 HSIW 538
+
Sbjct: 465 RIYF 468
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 465 bits (1200), Expect = e-156
Identities = 164/556 (29%), Positives = 254/556 (45%), Gaps = 64/556 (11%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ +L+LA + V +LSK T T AQGGI+A D+ H+ DT+ +
Sbjct: 21 LSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFD--ETDSIDSHVEDTLIAGAGI 77
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDR----NKNGTIYQRPFGGHSSNFGEKPIARAC 116
D+ A+EF+ A V L G+ FD N + + GGHS R
Sbjct: 78 CDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHR-------RIL 130
Query: 117 AVADRTGHALLHTLYQRNLHAKTNFFI--EWMAIDLISDSEGD------ILGVVALEMET 168
AD TG + TL + N + A+DLI + ++G
Sbjct: 131 HAADATGREVETTLVSK-ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNK 189
Query: 169 GNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVA 228
+ +K +LATGG +++ +TN I++GDG+ MA RAG + ++EF QFHPT +
Sbjct: 190 ETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANLEFNQFHPTALY 249
Query: 229 GAGV---LITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCG 285
L+TE +RGEG L +G RFM + +LAPRD V+RA+D E+K
Sbjct: 250 HPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDE-RGELAPRDIVARAIDHEMKRLGA-- 306
Query: 286 PNKDHVMLDLRHINSETIINRLPSI----LEIGNKFANVNALKEPIPVIPTIHYQMGGIP 341
D + LD+ H ++ I P I L +G ++ +EP+P++P HY GG+
Sbjct: 307 ---DCMFLDISHKPADFIRQHFPMIYEKLLGLG-----IDLTQEPVPIVPAAHYTCGGVM 358
Query: 342 TNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSL 401
+ +G+ + GLYAIGE + +HGANR+ +NSLL+ LV+G SA I
Sbjct: 359 VDDHGRTDVE---------GLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRR 409
Query: 402 ELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKN 461
LP S++EN +Q +++R M +Y G+ RT K ++
Sbjct: 410 MPYAHDISTLPPW-------DESRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLER 462
Query: 462 GYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATISSAISRKESRGAHAH 521
++I +L + + LEL NL++ A+ + A+ RKESRG H
Sbjct: 463 ALRRITMLQQEIDEYYAHFR------VSNNLLELRNLVQVAELIVRCAMMRKESRGLHFT 516
Query: 522 NDFKNRDDINWLKHSI 537
D+ + +
Sbjct: 517 LDYPELLT-HSGPSIL 531
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 445 bits (1146), Expect = e-148
Identities = 110/450 (24%), Positives = 181/450 (40%), Gaps = 76/450 (16%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIK 55
A++ G V ++ K + A GG++A+ + K D+ DT+K
Sbjct: 139 FSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMK 198
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G + D ++ + + V + G GG S N +P
Sbjct: 199 GGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDV-------GMMGGASVNRAHRPTG-- 249
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
G ++ LY + + + I+++ D +G + G++ M G + +
Sbjct: 250 ---GAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-K 305
Query: 176 SKITILATGGGGRI------------WAASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
+ ILATGG + STN GDGL +A AG L+DM++ Q H
Sbjct: 306 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAH 365
Query: 224 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAM--------- 274
PT GV++TE VRG G IL+N G+RF+ + RD S A+
Sbjct: 366 PTLSVKGGVMVTEAVRGNGAILVNREGKRFVNE-------ITTRDKASAAILAQTGKSAY 418
Query: 275 ---DQEIKE---------GRGCGPNKDHV--MLDLRHINSETIINRLPSILEIGNKFANV 320
D +++ G G P D + + + I+ + + + + + +
Sbjct: 419 LIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSSGKDT 478
Query: 321 --------NALKEP----IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGEC 368
AL E I V P +H+ MGG+ + +V+ N +++ GLY GE
Sbjct: 479 DFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVM---NAKKQVIPGLYGAGEV 535
Query: 369 ACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398
VHGANRLG N++ D++ FGR AG
Sbjct: 536 TG-GVHGANRLGGNAISDIITFGRLAGEEA 564
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate
reductace, succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B*
2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Length = 243
Score = 373 bits (960), Expect = e-125
Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 3/221 (1%)
Query: 567 DIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLA 626
D P+ + V + LLDAL IK ++ L+ R SCR +CGS M +N LA
Sbjct: 18 DTAPHSAFYEVPYDATT-SLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLA 76
Query: 627 CITNLNELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNP-PEKERLQSP 685
C T L + + + L P+ RDLVVDMT F + +IKP++I N+ + +Q+P
Sbjct: 77 CKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTP 136
Query: 686 SQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNL 745
+Q CI CG C ACP F N + F+GPA + A+R+ DSRD R+ L
Sbjct: 137 AQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQL 195
Query: 746 EDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYRII 786
++ C + C + CPK ++P +I + K +
Sbjct: 196 NSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFL 236
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B*
2wu5_B* 2wp9_B*
Length = 238
Score = 369 bits (949), Expect = e-123
Identities = 138/223 (61%), Positives = 166/223 (74%), Gaps = 6/223 (2%)
Query: 567 DIKPYMQKFLVNLSSNDKM-LLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGL 625
D P MQ + + M LLDAL ++K + D SL+ RRSCREGVCGSD +N+NGKNGL
Sbjct: 15 DDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGSDGLNMNGKNGL 73
Query: 626 ACITNLNELKQP---IIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNN-NPPEKER 681
ACIT ++ L QP I+IRPLPGLPVIRDLVVDM F+ Q+ IKP+L+ N NPP +E
Sbjct: 74 ACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREH 133
Query: 682 LQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFR 741
LQ P QR+ LDGLYECILC CCST+CPSFWWN D+F+GPAGLL AYRF+ DSRD T+ R
Sbjct: 134 LQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSR 193
Query: 742 LDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
LD L D + +FRC SIMNCV CPKGLNP R+I IK +++ R
Sbjct: 194 LDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQR 236
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 377 bits (971), Expect = e-122
Identities = 102/450 (22%), Positives = 175/450 (38%), Gaps = 75/450 (16%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIK 55
+ A++ G V +L K +T A GG++A+ D + DT+K
Sbjct: 139 LAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMK 198
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G + D + ++ + + + L G GG S N +P
Sbjct: 199 GGRNINDPELVKVLANNSSDSIDWLTSMGADMTD-------VGRMGGASVNRSHRPTG-- 249
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
G + L+ + T+ + + ++ D+ G + GV+ TG +I +
Sbjct: 250 ---GAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVI-K 305
Query: 176 SKITILATGGGGR------------IWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
+ ++A GG + +TN TGDGL +A +AG D+++ Q H
Sbjct: 306 ADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLQYIQAH 365
Query: 224 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEG-- 281
PT GV+ITE VRG G I++N G RFM ++ RD S A+ Q+ E
Sbjct: 366 PTYSPAGGVMITEAVRGNGAIVVNREGNRFMN-------EITTRDKASAAILQQKGESAY 418
Query: 282 --------RGCGPNKDHVMLDLRH-------------INSETIINRLPSILEI------- 313
+ + +V L++ + + + + +
Sbjct: 419 LVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDA 478
Query: 314 --GNKFANVNALKEP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGEC 368
+ P + + P +H+ MGG+ + +V + K + GLYA GE
Sbjct: 479 QFERPDLPRELVVAPFYALEIAPAVHHTMGGLVIDTKAEVK--SEKTAKPITGLYAAGEV 536
Query: 369 ACVSVHGANRLGTNSLLDLLVFGRSAGNHI 398
VHGANRLG N++ D++ +GR AG
Sbjct: 537 TG-GVHGANRLGGNAISDIVTYGRIAGASA 565
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Length = 241
Score = 360 bits (925), Expect = e-120
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 7/221 (3%)
Query: 569 KPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628
KP+ Q++ + + + + L+ I+ D L CR G+CGS M ING+ LAC
Sbjct: 20 KPHFQEYKIEEAPSM-TIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACR 78
Query: 629 TNLNELKQPII-IRPLPGLPVIRDLVVDMTLFF-KQFNSIKPFLITNNNP--PEKERLQS 684
T + + +I + PLP +I+DL VD +F ++ ++ + E
Sbjct: 79 TLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIE 138
Query: 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDN 744
P + + L CI CGCC AC + D FVG AGL + RF+ D DE T+
Sbjct: 139 PEVAQEVFELDRCIECGCCIAACGTKIMRED-FVGAAGLNRVVRFMIDPHDERTDEDYYE 197
Query: 745 -LEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
+ D +F C +++ C D CPK L I ++ M+
Sbjct: 198 LIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSV 238
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein,
reductase, mitochondria MEMB oxidoreductase; HET: FAD
HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Length = 282
Score = 352 bits (904), Expect = e-116
Identities = 114/223 (51%), Positives = 156/223 (69%), Gaps = 3/223 (1%)
Query: 565 HHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNG 624
KP +QKF V+L M+LDAL +IK ++D +LT RRSCREG+CGS AMNI G+N
Sbjct: 47 EPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENT 106
Query: 625 LACITNLNE-LKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNPP--EKER 681
LACI N+++ + I PLP + VI+DLV DM LF+ Q+ SI+P+L EK++
Sbjct: 107 LACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQ 166
Query: 682 LQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFR 741
QS +++ LDGLYECILC CCS +CPS+WWN+D+++GPA L+QAYR+I DSRD++ R
Sbjct: 167 YQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAER 226
Query: 742 LDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
L ++D + F+C +IMNC TCPK LNP R+I +IK L+
Sbjct: 227 LARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTKM 269
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein,
heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B*
3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B*
3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B*
3aee_B* ...
Length = 252
Score = 345 bits (886), Expect = e-114
Identities = 113/222 (50%), Positives = 158/222 (71%), Gaps = 3/222 (1%)
Query: 566 HDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGL 625
KP MQ + V+L+ M+LDAL +IK ++D +LT RRSCREG+CGS AMNI G N L
Sbjct: 24 PGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTL 83
Query: 626 ACITNLN-ELKQPIIIRPLPGLPVIRDLVVDMTLFFKQFNSIKPFLITNNNP--PEKERL 682
AC ++ +L + I PLP + V++DLV D++ F+ Q+ SI+P+L + +++ L
Sbjct: 84 ACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYL 143
Query: 683 QSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRL 742
QS R+ LDGLYECILC CCST+CPS+WWN D+++GPA L+QAYR++ DSRD+ T RL
Sbjct: 144 QSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERL 203
Query: 743 DNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSINKIKELMIYR 784
L+DP+ L+RC +IMNC TCPKGLNP ++I +IK++M
Sbjct: 204 AQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATY 245
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 262 bits (671), Expect = 2e-78
Identities = 102/459 (22%), Positives = 183/459 (39%), Gaps = 80/459 (17%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIK 55
ASL + G NV ++ K + +++ + GG++A D W + D +K
Sbjct: 134 FNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMK 193
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G D + + +++ V LE G D + GG
Sbjct: 194 GGRQQNDIKLVTILAEQSADGVQWLESLGANLDD-------LKRSGGAR-----VDRTHR 241
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
+G ++ TL + + + + L+ + + ++G V + ++
Sbjct: 242 PHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVV-HGKHTGYYMIG 300
Query: 176 SKITILATGG-----------GGRIW-AASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
+K +LATGG + S+N TGDG+ MA G + D+++ Q H
Sbjct: 301 AKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAH 360
Query: 224 PTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAM--------- 274
PT + +LI+E VRG G +++N +G RF+ +L RD S A+
Sbjct: 361 PTVGKDSRILISETVRGVGAVMVNKDGNRFIS-------ELTTRDKASDAILKQPGQFAW 413
Query: 275 ---DQEIKEGRGCGPNKDHVMLDLRH-------------INSETI---INRLPSILEIGN 315
D ++ + + + L++ + + + ++ + G
Sbjct: 414 IIFDNQLYKKA--KMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGK 471
Query: 316 ------KFANVNALKEP---IPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIG 366
+N + P + V P IH+ MGG+ N V+ + +K ++GL+A G
Sbjct: 472 DTAFGRADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVL---DLQSKPIDGLFAAG 528
Query: 367 ECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKK 405
E VHG NRLG N++ D +VFGR AG++ L K
Sbjct: 529 EVTG-GVHGYNRLGGNAIADTVVFGRIAGDNAAKHALDK 566
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain,
unknown function; 1.94A {Helicobacter pylori}
Length = 514
Score = 184 bits (468), Expect = 2e-50
Identities = 32/246 (13%), Positives = 78/246 (31%), Gaps = 45/246 (18%)
Query: 541 NGNRIEFKPVNLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDS 600
G+ + +++K V K D P + + + D+ LLD L ++K
Sbjct: 16 RGSHMSVLKLHVK---VFRFETNK--DYNPAYESYFLEYQ-EDQYLLDLLKQLK-----G 64
Query: 601 LTLRRSCREGVCGSDAMNINGKNGLA---CITNLNELKQPIIIRPLPGLPVIRDLVVDMT 657
++ + A+ IN + + ++ PL ++DL++D
Sbjct: 65 VSYSENI--------ALKINQIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLMIDEK 116
Query: 658 LFFKQFNSIKPFLITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRF 717
K + + +++ L+ + P + ++
Sbjct: 117 AVLKNYEDFFKQ----------VPYITKGEKEELEKFI------QINFINPQT---NPKY 157
Query: 718 VGPAGLLQAYRFISDSRDEATNFRLDNLEDPYR-LFRCRSIMNCVDTCPKGLNPNRSINK 776
+G L + E + L+ + P + S+ N + I +
Sbjct: 158 LGDGFFLYVKWLMKRYPTE-RDRLLEMISQPESGVMNFLSV--AHYLYKNDDNIDHEIYE 214
Query: 777 IKELMI 782
++E++
Sbjct: 215 LQEILT 220
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 174 bits (443), Expect = 5e-47
Identities = 78/485 (16%), Positives = 146/485 (30%), Gaps = 119/485 (24%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISA-SLGNMS-------------KDNW 46
+ AS++ A+ G +V +L + + GG +A + G + D+
Sbjct: 54 VAASIEAARAGADVLVLERT--------SGWGGATALAGGFIYLGGGTPLQKACGFDDSP 105
Query: 47 HWHMFDTIKGSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRP------- 99
+ D++ I C+ + + L G+PF + G P
Sbjct: 106 ENMKTFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLM 165
Query: 100 -FGGHSS---NFGEKPIARACAVADRT--------GHALLHTLYQRNLHAKTNFFIEWMA 147
GG ++ N P R G+ L+ L + +
Sbjct: 166 YSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRV 225
Query: 148 IDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGR------------IWAASTN 195
L++D G ++G+VA + + + + +LATG I
Sbjct: 226 QTLVTDDTGRVVGIVA-KQYGKEVAVRARRGVVLATGSFAYNDKMIEAHAPRLIGRPGAA 284
Query: 196 AFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFM- 254
+ G + MA G L M+ + GIL+N G+R++
Sbjct: 285 IEEHDGRSILMAQALGADLAHMDATEVAFVCDPQL---------IVRGILVNGRGQRYVP 335
Query: 255 ERYAPILKDLAPRDFVSRAM------------DQEIKEGRGCGPNKDHVMLDLRHINSET 302
E + + D+ E + +ET
Sbjct: 336 E--------DTYSGRIGQMTLFHQDNQAFLIIDEASYEEGAAATTATPFLRVQPKWAAET 387
Query: 303 I--------INRLPSIL-----------------EIGNKFANVNALKEP---IPVIP-TI 333
+ + L + K V + P + + T+
Sbjct: 388 VEELESDMGLP--AGALQSTVEVYNKHAAEGSDPLLHKKSEWVKPIGTPVAALDLRGFTL 445
Query: 334 HYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRS 393
+ +GG+ T + +V+ + + + + GL+A G C V SL D +GR
Sbjct: 446 GFTLGGLRTTVNSEVL---HVSGEPIPGLFAAGRCTS-GVCAGGYASGTSLGDGSFYGRR 501
Query: 394 AGNHI 398
AG
Sbjct: 502 AGISA 506
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 6e-11
Identities = 84/645 (13%), Positives = 177/645 (27%), Gaps = 182/645 (28%)
Query: 47 HWHMFDTIKGSDYLGDQDAIE---------FMCK---EAPKVVY---ELEH-FGMP---- 86
H H D G +D + F CK + PK + E++H
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 87 -----FD--RNKNGTIYQRPFGG-HSSNFG--EKPIARACAVADRTGHALLHTLYQRNLH 136
F +K + Q+ N+ PI + ++ + L+
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIEQRDRLY 120
Query: 137 AKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNA 196
F ++ ++ L LE+ ++++ G G+ W A
Sbjct: 121 NDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDGV------LGSGKTWVAL--- 168
Query: 197 FINTGDGLGMAARAGLPLEDME---FWQFHPTGVAGAGVLITEGVRGEGGILINSNGERF 253
+ M+ FW + ++ E
Sbjct: 169 ---------DVCLSYKVQCKMDFKIFW-------------LNLKNCNSPETVL----EML 202
Query: 254 MERYAPILKDLAPRDFVSRAMDQEIKEGRG------CGPNKDHVMLDLRHINSETIINRL 307
+ I + R S + I + ++ +L L ++ + N
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-- 260
Query: 308 PSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGE 367
F N+ ++++ + + L A
Sbjct: 261 --------AF-------------------------NLSCKILLTTRFKQ-VTDFLSAATT 286
Query: 368 CACVSVHGANRLGTNSLLDLL--VFGRSAGNHILSLELKKIHNKKLPINSIDII------ 419
H + L + + LL + L E+ + P + II
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREVLTTN----PR-RLSIIAESIRD 339
Query: 420 ----IDRLSKLENNKGSESVQ-SVAN----DIRKTMQNY--CGVFRTD-----KLM---- 459
D + +K + ++ S+ + R + + VF L+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIW 396
Query: 460 --KNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIETAKATI--SSAISRKES 515
++++++ KY S +K +T I ++ L+ ++ S +
Sbjct: 397 FDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 516 RGAHAHNDF-KNRDDINWLKHSIWY--SNGNRIE----FKPV--NLKPLTVKTVHPKKH- 565
+D D + H I + N E F+ V + + L K H
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 566 ----------HDIKPYMQKFLVNLSSNDKM---LLDALHRIKYDI 597
+K Y N +++ +LD L +I+ ++
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Score = 50.2 bits (119), Expect = 3e-06
Identities = 64/443 (14%), Positives = 118/443 (26%), Gaps = 130/443 (29%)
Query: 379 LGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQSV 438
+ D+ +S + E+ I K ++ + L +K E VQ
Sbjct: 33 FDCKDVQDMP---KSI---LSKEEIDHIIMSKDAVSGTLRLFWTLL----SKQEEMVQKF 82
Query: 439 ANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDK----SKIF---NTARIE 491
++ + NY F + + M+ R YI +D+ +++F N +R++
Sbjct: 83 VEEVLR--INY--KFLMSPIKTEQRQPSMM---TRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 492 ALE-----LDNLIETA-----------KATISSAISRKESRGAHAHNDFKNRDDINWLKH 535
L L K ++ + DFK I WL
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFK----IFWL-- 187
Query: 536 SIWYSNGNRIEFKPVNLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKY 595
+ N + +QK L + N D IK
Sbjct: 188 ----NLKNC------------------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 596 DIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELKQPIIIRPLP-GLPVIRDLVV 654
I ++ EL++ + +P L V+ + V
Sbjct: 226 RIHS---IQ---------------------------AELRRLLKSKPYENCLLVLLN-VQ 254
Query: 655 DMTLFFKQFNSIK-PFLITNNNPPEKERLQSPSQRKI-----LDGLYE------CILC-G 701
+ + FN + L+T + L + + I L +
Sbjct: 255 NAKA-WNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 702 CCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCV 761
C P P L I D DN ++ C + +
Sbjct: 313 CRPQDLPR----EVLTTNPRRLSIIAESIRDGLA-----TWDN----WKHVNCDKLTTII 359
Query: 762 DTCPKGLNPNRSINKIKELMIYR 784
++ L P L ++
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFP 382
Score = 39.1 bits (90), Expect = 0.006
Identities = 54/363 (14%), Positives = 114/363 (31%), Gaps = 100/363 (27%)
Query: 477 SFKDKSKIFNTARIEALELDNLIETAKATISSA-----------ISRK-------ESRGA 518
+KD +F A ++ + ++ + K+ +S +S S+
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 519 HAHNDFKN---RDDINWLKHSIWYSNGNRIEFKPVNLKPLTVKTVHPKKHHDIKPYMQKF 575
F R + +L I + E + ++ + ++D + + K+
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPI------KTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKY 129
Query: 576 LVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNLNELK 635
V+ L AL ++ ++ + +GV GS GK +A L+
Sbjct: 130 NVSRLQPYLKLRQALLELR--PAKNVLI-----DGVLGS------GKTWVA----LDVCL 172
Query: 636 QPIIIRPLPG----------------LPVIRDLVVDMTLFFKQ--FNSIKPFLITNNNPP 677
+ + L +++ L+ + + +S L ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 678 EKERLQSPSQRK----ILDGLYECILCGCCSTACPSFWWNS---DRFVGPAGLLQAYRFI 730
E RL + +L + N+ + F +L RF
Sbjct: 233 ELRRLLKSKPYENCLLVLLNV-----------------QNAKAWNAFNLSCKILLTTRFK 275
Query: 731 S--DSRDEA--TNFRLDNLEDPYRLFRCRSIM-NCVDTCPKGL-------NPNRSINKIK 778
D A T+ LD+ +S++ +D P+ L NP R ++ I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIA 334
Query: 779 ELM 781
E +
Sbjct: 335 ESI 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 6e-08
Identities = 67/427 (15%), Positives = 112/427 (26%), Gaps = 189/427 (44%)
Query: 31 QGGISASLGNMSKD----------NWH---WHMFDTIKGSDYLGDQDAIEFMCKEAPKVV 77
QG S G M D W+ H DT S I + P +
Sbjct: 1624 QG--SQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTYGFS--------ILDIVINNPVNL 1672
Query: 78 YELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHA 137
TI+ FGG + + + + T+ L
Sbjct: 1673 ----------------TIH---FGG----------EKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 138 KTNFF-IEWMAIDLISDSEGDILGVVALEMETGN----IMILESKITILATGGGGRIWAA 192
+ F I + SE +L T + ++E A +
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLL------SATQFTQPALTLME-----KA------AFED 1746
Query: 193 STNAFINTGDGLGMAARAGLPLEDMEFWQFHPTG-----VAGAGVL-ITEGV-----RGE 241
+ + D A AG H G + A V+ I V RG
Sbjct: 1747 LKSKGLIPAD----ATFAG-----------HSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 242 GGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLD---LRHI 298
++ PRD + R+ I P + L+++
Sbjct: 1792 ------------------TMQVAVPRDELGRSNYGMI----AINPGRVAASFSQEALQYV 1829
Query: 299 NSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQVIIPNNDNNKI 358
E + R ++EI VN Y N+ Q +
Sbjct: 1830 V-ERVGKRTGWLVEI------VN-------------Y-------NVENQQYV-------- 1854
Query: 359 VNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILS-LELKKIHNKKLPIN-SI 416
A G LD + ++L+ ++L+KI +L + S+
Sbjct: 1855 ---------AA----------GDLRALDTVT-------NVLNFIKLQKIDIIELQKSLSL 1888
Query: 417 DIIIDRL 423
+ + L
Sbjct: 1889 EEVEGHL 1895
Score = 43.9 bits (103), Expect = 2e-04
Identities = 116/660 (17%), Positives = 193/660 (29%), Gaps = 252/660 (38%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
R L L+ L +L V PT S +A+Q L ++ F+ I
Sbjct: 6 TR-PLTLSHGSLEHVLL--V-PTASFFIASQ------L----QEQ-----FNKIL----- 41
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEK-PIARACAVA 119
+ F + P EL + F G+ S+ E + + V
Sbjct: 42 -PEPTEGFAADDEPTTPAEL---------------VGK-FLGYVSSLVEPSKVGQFDQVL 84
Query: 120 DRTGHALLHT-----LYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174
+ L L ++HA +A L+ +++ ++ L I
Sbjct: 85 ----NLCLTEFENCYLEGNDIHA--------LAAKLLQENDTTLVKTKEL--------I- 123
Query: 175 ESKITILATGGGGR-IWAASTNAFINTGDGLGMAARAG-LPLEDMEFWQFHPTGVAGAGV 232
K I A R S +A A G L F
Sbjct: 124 --KNYITARIMAKRPFDKKSNSALFR-------AVGEGNAQL----VAIF---------- 160
Query: 233 LITEGVRGEGGILINSNGERFME------RYAPILKDLAPRDFVSRAMDQEIKEGRGCGP 286
G G+G N++ + F E Y ++ DL F + + + I+
Sbjct: 161 ----G--GQG----NTD-DYFEELRDLYQTYHVLVGDLI--KFSAETLSELIRTTLDAEK 207
Query: 287 NKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPV-IPTI------HY---- 335
L++ LE + + + L IP+ P I HY
Sbjct: 208 VFTQG-LNIL------------EWLENPSNTPDKDYLLS-IPISCPLIGVIQLAHYVVTA 253
Query: 336 -QMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGEC----ACVSVHGA-NRLGTNSL--LDL 387
+G P + + G + ++ + + + +
Sbjct: 254 KLLGFTPGELR-----------SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 388 LVF-G-RSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGSESVQ-SVANDIRK 444
L F G R + + P S+ I S LENN+G S S++N ++
Sbjct: 303 LFFIGVRC---Y-----------EAYPNTSLPPSILEDS-LENNEGVPSPMLSISNLTQE 347
Query: 445 TMQNYCGVFRTDKLMKNGYKKIMILDERRK-YISFKDKSKIFNTAR-------IEALE-L 495
+Q+Y V +T N + L ++ IS + N A+ ++L L
Sbjct: 348 QVQDY--VNKT-----NSH-----LPAGKQVEIS------LVNGAKNLVVSGPPQSLYGL 389
Query: 496 DNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKPVNLKPL 555
+ + AKA SR F R K NR F PV P
Sbjct: 390 NLTLRKAKAPSGLDQSRIP---------FSER------KLKF----SNR--FLPVAS-PF 427
Query: 556 TVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDAL--------HRIK---YDIDDSLTLR 604
H + ++D + D + I+ YD D LR
Sbjct: 428 ----------HS--HLLV------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Score = 43.1 bits (101), Expect = 4e-04
Identities = 46/283 (16%), Positives = 72/283 (25%), Gaps = 111/283 (39%)
Query: 3 ASLQLAQEGLN-VAILSKVFPTRSHTVAAQGGISASLGNMSKDN----------WHWHM- 50
S L+ L + V T SH + A + SL N N + ++
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLT 392
Query: 51 FDTIKGSDYLGDQDAIEFMCKEAPKVVYELEHF---GMPFDRNKNGTIYQRPFGGHSSNF 107
K L DQ I F + K F PF HS
Sbjct: 393 LRKAKAPSGL-DQSRIPF-SERKLKFSNR---FLPVASPF---------------HSHLL 432
Query: 108 GEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEME 167
A D + + + A D+
Sbjct: 433 VP---ASDLINKDLVKNN-----------------VSFNAKDI----------------- 455
Query: 168 TGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQ------ 221
+I + T G + S + + + R LP+ W+
Sbjct: 456 ---------QIPVYDTFDGSDLRVLSGSI---SERIVDCIIR--LPV----KWETTTQFK 497
Query: 222 ------FHPTGVAGAGVLITEGVRGEG-GILI------NSNGE 251
F P G +G GVL G G +++ N + +
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 42.3 bits (99), Expect = 7e-04
Identities = 59/388 (15%), Positives = 109/388 (28%), Gaps = 139/388 (35%)
Query: 34 ISASLGNMSKDN-----WHWHMFDTIK---------GSDYLGDQDAIEFMCKEAPKV-VY 78
+ +L + + + ++ DYL +I C P + V
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---LSIPISC---PLIGVI 244
Query: 79 ELEHF-------GM-PFDRNKNGTIYQRPFG--GHSSNFGEKPIARACAVAD------RT 122
+L H+ G P G + G GHS A A A D +
Sbjct: 245 QLAHYVVTAKLLGFTP------GELRSYLKGATGHSQGL---VTAVAIAETDSWESFFVS 295
Query: 123 GHALLHTLYQRNLHAKTNFFIEWMAIDLISDS----EGD---ILGVVALEMETGNIMILE 175
+ L+ + + + ++ DS EG +L + L E ++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-----VQ 350
Query: 176 SKITILAT--GGGGRIWAASTNA---FINTG-----DGL-----GMAARAGL-----PLE 215
+ + G ++ + N + +G GL A +GL P
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 216 DM--EF-WQFHPTGV-------AGAGVLITEGVRGEGGILINS-----------NGERFM 254
+ +F +F P A LI + + + + N+ +G
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV-KNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 255 ERYAPILKDLAPR--------------------DF----VSR--AMDQEIKEGRGCGPNK 288
I + + DF S + K+G G
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG----- 524
Query: 289 DHVMLDLRHINSETIINRLPSILEIGNK 316
+R I + T ++ P + G K
Sbjct: 525 ------VRVIVAGT-LDINPD-DDYGFK 544
Score = 34.6 bits (79), Expect = 0.14
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 647 PVIRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQ-RKILDG----LYECILCG 701
+D+ FK I NNP + ++I + ++E I+ G
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 702 CCSTACPSF-----WWNSDRFVGPAGLLQAYRF 729
T F S F GLL A +F
Sbjct: 1700 KLKTE-KIFKEINEHSTSYTFRSEKGLLSATQF 1731
Score = 34.6 bits (79), Expect = 0.18
Identities = 65/415 (15%), Positives = 118/415 (28%), Gaps = 151/415 (36%)
Query: 374 HGANRLGTNSL-LDLLVFGRSAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENNKGS 432
HG SL LLV + ++ +L++ NK LP + D ++ +
Sbjct: 13 HG-------SLEHVLLV---PTASFFIASQLQEQFNKILPEPTEGFAAD-------DEPT 55
Query: 433 ESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEA 492
+ V K++ + + ++ +E
Sbjct: 56 TPAELVG----------------------------------KFLGY-----V--SSLVEP 74
Query: 493 LELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKPVNL 552
++ + ++ N + +DI H++ L
Sbjct: 75 SKVGQFDQVLNLCLT-----------EFENCYLEGNDI----HAL-----------AAKL 108
Query: 553 KPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREG-- 610
T K IK Y+ ++ DK AL R+ EG
Sbjct: 109 -LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF-------------RAVGEGNA 154
Query: 611 ----VCGSDAMNINGK-NGLACITNLNEL-------KQPIIIRPLPGL-PVIRDLVVDMT 657
+ G G+ N L +L +I L +IR +
Sbjct: 155 QLVAIFG-------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 658 LFFKQFNSIKPFLITNNNPPEKERLQS-----PSQRKILDGLYECILCGCCSTACPSFWW 712
+F + N I +L +N P+K+ L S P L G+ + +
Sbjct: 208 VFTQGLN-ILEWLENPSNTPDKDYLLSIPISCP-----LIGVIQ---LAHYVVTAKLLGF 258
Query: 713 N----SDRFVG----PAGLLQAYRFISDSRDEATNFRLDNLEDPYR-LF----RC 754
G GL+ A I+++ D +F ++ LF RC
Sbjct: 259 TPGELRSYLKGATGHSQGLVTA-VAIAET-DSWESF-FVSVRKAITVLFFIGVRC 310
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics,
northeast structural genomics consortiu PSI-biology; NMR
{Lactobacillus plantarum}
Length = 160
Score = 48.5 bits (116), Expect = 8e-07
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 223 HPTGVAGAGVLITEGVRGEGGILINSNGERFM-ERYAPILKDLAPRDFVSRAM 274
P VA ++ G I +NS G+R + E A+
Sbjct: 3 EPG-VAKLTTYASKQATDMGAIYVNSKGDRIVNE--------SNVYTTFRNAI 46
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9*
3m9s_9*
Length = 182
Score = 32.4 bits (74), Expect = 0.32
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 26/126 (20%)
Query: 649 IRDLVVDMTLFFKQFNSIKPFLITNNNPPEKERLQSPSQR------KILDGLYECILCGC 702
++ L + + K S +T P L P + +GL +CI C
Sbjct: 3 LKALAQSLGITLKYLFSKP---VTVPYPDAPVAL-KPRFHGRHVLTRHPNGLEKCIGCSL 58
Query: 703 CSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIM--NC 760
C+ ACP + +S A + ++ + RC I C
Sbjct: 59 CAAACP-----AYAIYVEPAENDPENPVSAGERYAKVYEIN-------MLRC--IFCGLC 104
Query: 761 VDTCPK 766
+ CP
Sbjct: 105 EEACPT 110
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 32.5 bits (75), Expect = 0.49
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGS 614
++ +L+ L + SC G CGS
Sbjct: 254 NRSILEVLRDANVRVP------SSCESGTCGS 279
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 30.3 bits (68), Expect = 0.62
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 19/71 (26%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI G C ACP +++ D + + DP C
Sbjct: 45 CIADGSCINACPV---------------NVFQWY----DTPGHPASEKKADPVNEQACIF 85
Query: 757 IMNCVDTCPKG 767
M CV+ CP
Sbjct: 86 CMACVNVCPVA 96
Score = 29.1 bits (65), Expect = 1.6
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 696 ECILCGCCSTACP 708
CI C C CP
Sbjct: 82 ACIFCMACVNVCP 94
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 28.9 bits (65), Expect = 0.79
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 26/71 (36%)
Query: 696 ECILCGCCSTACPS-FWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRC 754
ECI C C P F + + S++E
Sbjct: 10 ECIACESCVEIAPGAFAMDPE-----IEKAYVKDVEGASQEE------------------ 46
Query: 755 RSIMNCVDTCP 765
+ +DTCP
Sbjct: 47 --VEEAMDTCP 55
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria
phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Length = 117
Score = 30.1 bits (67), Expect = 0.95
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 4/107 (3%)
Query: 140 NFFIEWMAI--DLISDSEGDILGVVALEMETGNIM-ILESKITILATGGGGRIWAASTNA 196
N F +A + I G + + E I + + I G G R+ +S +
Sbjct: 6 NLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSL 65
Query: 197 FINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRGEGG 243
F+ T + + L + + FW + G + G RG
Sbjct: 66 FVRTDEVRQLRRGDTLTIGEENFWVDRVSPDDGGSCHLWLG-RGVPP 111
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 31.3 bits (72), Expect = 1.3
Identities = 47/290 (16%), Positives = 88/290 (30%), Gaps = 87/290 (30%)
Query: 152 SDSEGDILGVVALEMETGNIMI-LESKIT-----------------------ILATGGGG 187
S DI+ ++ EM+ + + LE+ I ++A+GG
Sbjct: 128 DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVASGGKS 187
Query: 188 RIWAASTNAFINTGDGLGMAARAGL----------PLEDMEFWQFHPTGVAGAGVLIT-- 235
A TG +A + GL PL + +AG
Sbjct: 188 ---IPKMGA---TGLAYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADAEAR 241
Query: 236 -EGVRGEGGILINSNG---------ERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCG 285
+LI G + I+ L P D ++ + ++
Sbjct: 242 FGKAAFREAVLITHRGLSGPAILQISSYWREGEEIVLRLMP-DIDIASILKGMRRAN--- 297
Query: 286 PNKDHVMLDLRHINSETIINRL-PSILEI----GNKFAN---------VNALKE-PIPVI 330
+ ++ ++ + RL + G A+ ++++ +
Sbjct: 298 GRQ-----AVQTALADILPRRLAQFFADEAKLTGRMLADLSDKTIDALASSIQVWAVKPA 352
Query: 331 PTIHYQ-----MGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHG 375
+ Y+ +GG+ T + K V GLY +GE CV V G
Sbjct: 353 GSEGYRTAEVTLGGVDTR----ALDSRTMQAKEVPGLYFVGE--CVDVTG 396
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 31.6 bits (72), Expect = 1.3
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 14/71 (19%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
C+LCG C AC A +F++ + E + C
Sbjct: 147 CLLCGRCVNACGKN----------TE-TYAMKFLNKNGKTIIG---AEDEKCFDDTNCLL 192
Query: 757 IMNCVDTCPKG 767
C+ CP
Sbjct: 193 CGQCIIACPVA 203
Score = 28.5 bits (64), Expect = 9.7
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 696 ECILCGCCSTACPSF 710
C+LCG C ACP
Sbjct: 189 NCLLCGQCIIACPVA 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.3
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 251 ERFMERYAPILKDLAPRDFVSRAMDQEIK 279
+ ++ YA D AP + A+ ++
Sbjct: 26 QASLKLYAD---DSAP----ALAIKATME 47
>3pub_A 30KDA protein; beta-trefoil fold, haemolymph, unknown function;
1.91A {Bombyx mori}
Length = 251
Score = 30.8 bits (69), Expect = 1.4
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 417 DIIIDRLSKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYI 476
D +++ L K SE + +V N + + + C + +L G K I+ R
Sbjct: 25 DSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEY-AYQLWLQGSKDIV-----RDCF 78
Query: 477 SFKDKSKIFNTARIEAL-ELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKH 535
+ + IF I+ + + D L T+S+ + + R A K ++W
Sbjct: 79 PVEFR-LIFAENAIKLMYKRDGL----ALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFI 133
Query: 536 SIWYSNGNRIEFKPVNLK 553
++W N++ FK +N +
Sbjct: 134 ALW--ENNKVYFKILNTE 149
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 31.2 bits (70), Expect = 1.5
Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 10/114 (8%)
Query: 115 ACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMIL 174
+D +L + + +I DSE D+ V G ++L
Sbjct: 227 IALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGFDV---DPMGWKVVL 283
Query: 175 ESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVA 228
++ +L + + L + W HP G
Sbjct: 284 SPRVPVL---AKASLQPTYADLL----SSLQDQLPSSYQKPADFDWAMHPGGAT 330
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 31.1 bits (69), Expect = 1.7
Identities = 19/196 (9%), Positives = 61/196 (31%), Gaps = 21/196 (10%)
Query: 431 GSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARI 490
++Q + +T++ + D+ + + +D ++ + + +T
Sbjct: 6 EFMALQLEPPTVVETLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGPNMEVDT--- 62
Query: 491 EALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKPV 550
L++ ++ +T + + R R + + ++ PV
Sbjct: 63 --LDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARLEEKLM--TVVSGP------DPV 112
Query: 551 NLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRI------KYDIDDSLTLR 604
N L V + K +N+ + + L + + + D + ++
Sbjct: 113 NTVFLNFMAVQDDTAKVWSEELFKLAMNILAQNASRNTFLRKAYTKLKLQVNQDGRIPVK 172
Query: 605 RSCREGVCGSDAMNIN 620
+ + +D +
Sbjct: 173 NILK--MFSADKKRVE 186
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 30.6 bits (69), Expect = 1.8
Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 35/147 (23%)
Query: 82 HFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNF 141
F P D + + + Q FG A A V + +++
Sbjct: 197 TFRGPSDTHLDSLVGQALFGDG---------AAALIVGSDPVPEIEKPIFE--------- 238
Query: 142 FIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTG 201
+ W A + DSEG I + E G L + + I A AF
Sbjct: 239 -MVWTAQTIAPDSEGAIDVHL---REAGLTFHLLKDVPGIV---SKNITKALVEAF---- 287
Query: 202 DGLGMAARAGLPLEDMEFWQFHPTGVA 228
G+ + FW HP G A
Sbjct: 288 ------EPLGISDYNSIFWIAHPGGPA 308
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Length = 59
Score = 27.7 bits (62), Expect = 1.8
Identities = 12/71 (16%), Positives = 15/71 (21%), Gaps = 27/71 (38%)
Query: 696 ECILCGCCSTACPS-FWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRC 754
ECI C C CP F A +
Sbjct: 8 ECIGCESCVELCPEVFAMIDGE--EKA------MVTAPDSTA------------------ 41
Query: 755 RSIMNCVDTCP 765
+ +D CP
Sbjct: 42 ECAQDAIDACP 52
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 30.9 bits (69), Expect = 2.1
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 686 SQRKILDGLYE----CILCGCCSTACPS 709
+++ E CI C C C
Sbjct: 440 AKKGDFSYFEEIHDTCIGCRRCEQVCKK 467
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B*
2vpy_B*
Length = 195
Score = 30.0 bits (68), Expect = 2.3
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 22/71 (30%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI CG C ACP +++ R++ PAG + F + RL+ + P
Sbjct: 90 CIACGACIAACP---YDA-RYLHPAGYVSKCTFCAH--------RLEKGKVPA------- 130
Query: 757 IMNCVDTCPKG 767
CV+TCP
Sbjct: 131 ---CVETCPTY 138
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 27.2 bits (61), Expect = 2.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 696 ECILCGCCSTACP 708
CI CG C+ CP
Sbjct: 36 TCIDCGACAGVCP 48
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Length = 77
Score = 28.0 bits (63), Expect = 2.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 696 ECILCGCCSTACP 708
CI CG C CP
Sbjct: 38 VCIDCGACEAVCP 50
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 28.3 bits (63), Expect = 2.5
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 670 LITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRF 717
L N P + +L L Y+ G C+ PS DR
Sbjct: 16 LPRTINLPNELKLD-------LYKYYKQSTIGNCNIKEPSAHKYIDRK 56
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C*
3lw5_C* 2o01_C*
Length = 80
Score = 27.9 bits (62), Expect = 2.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 696 ECILCGCCSTACP 708
+C+ C C TACP
Sbjct: 46 DCVGCKRCETACP 58
Score = 27.1 bits (60), Expect = 5.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 697 CILCGCCSTACP 708
CI C C ACP
Sbjct: 10 CIGCTQCVRACP 21
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 30.3 bits (69), Expect = 2.9
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 5 LQLAQEGLNVAILSKVFPTRSHTVAAQGGISA 36
LA+E N A+ T AA G + A
Sbjct: 34 YYLAKENKNTALFESGTMGGRTTSAAAGMLGA 65
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium
tuberculosis, Fe cluster, metal-binding, electron
transfer, transport; 1.6A {Mycobacterium smegmatis}
Length = 105
Score = 28.1 bits (63), Expect = 3.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 696 ECILCGCCSTACP 708
EC+ CG C CP
Sbjct: 38 ECVDCGACEPVCP 50
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
azotobacter, hydrogen bonds, stability, high resolution;
1.64A {Thermus aquaticus} SCOP: d.58.1.2
Length = 78
Score = 27.6 bits (62), Expect = 3.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 696 ECILCGCCSTACP 708
ECI CG C ACP
Sbjct: 38 ECIDCGACVPACP 50
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 29.7 bits (67), Expect = 3.8
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 697 CILCGCCSTACP 708
CI C CS CP
Sbjct: 35 CIGCDTCSQYCP 46
Score = 29.3 bits (66), Expect = 5.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 697 CILCGCCSTACP 708
CI CG C T CP
Sbjct: 66 CINCGQCLTHCP 77
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 30.0 bits (68), Expect = 4.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 604 RRSCREGVCGSDAMNINGKNGLACIT 629
+ C +G CG+ ++ ++GK AC+T
Sbjct: 37 KVGCEQGQCGACSVILDGKVVRACVT 62
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur,
electron transport; 1.90A {Haloarcula marismortui} SCOP:
d.15.4.1 PDB: 1e0z_A* 1e10_A
Length = 128
Score = 28.5 bits (64), Expect = 4.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGS 614
+ +L+A YD SCR G C +
Sbjct: 45 GEYILEAAEAQGYD------WPFSCRAGACAN 70
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 29.4 bits (66), Expect = 4.6
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 147 AIDLISDSEGDILGVVALEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGM 206
A+ I + +G + G V T + + SK+ + ATG
Sbjct: 123 AMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF----------------- 164
Query: 207 AARAGLPLEDMEFWQFHPTGVAGAGVLITE 236
++ L E VA VL+T+
Sbjct: 165 RSKLPPELPITEDLDDKDADVAYREVLLTK 194
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 29.2 bits (66), Expect = 6.9
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 572 MQKFLVN------LSSNDKMLLDALHRIKYDIDDSLT-LRRSCREGVCGSDAMNINGKNG 624
+ +VN L S + +L+D L LT ++ C +G CG+ + ++GK
Sbjct: 3 TKTLIVNGMARRLLVSPNDLLVDVLRS-----QLQLTSVKVGCGKGQCGACTVILDGKVV 57
Query: 625 LACITNLNELKQPIIIRPLPGL 646
ACI ++ + + + L G+
Sbjct: 58 RACIIKMSRVAENASVTTLEGI 79
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.9 bits (65), Expect = 7.0
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 433 ESVQSVANDIRKTMQNYCGVFRT-DKLM--KNGYKK---------IMILDERRKYISFKD 480
+Q++ N ++ G R D ++ KN Y ++ + R + F
Sbjct: 416 YHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDG 475
Query: 481 KSKIFNTARIEALEL 495
A + L+L
Sbjct: 476 NVVELTGAELFNLQL 490
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B* 3egw_B*
Length = 512
Score = 28.8 bits (64), Expect = 7.4
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 35/78 (44%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAY--RFISDSRDEAT--NF---RLDNLEDPY 749
C C T CP Y + + ++ F R++ +
Sbjct: 217 CRGWRMCITGCP------------------YKKIYFNWKSGKSEKCIFCYPRIEAGQPTV 258
Query: 750 RLFRCRSIMNCVDTCPKG 767
C +TC
Sbjct: 259 ----------CSETCVGR 266
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Length = 106
Score = 27.3 bits (61), Expect = 8.1
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 696 ECILCGCCSTACP 708
ECI C C CP
Sbjct: 38 ECIDCALCEPECP 50
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A
{Aromatoleum aromaticum}
Length = 352
Score = 28.4 bits (63), Expect = 8.6
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 670 LITNNNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714
+ + N E + + Q + L +C+ C C+ AC + W
Sbjct: 3 YVQDGNKSELRKAKR--QLVTVIDLNKCLGCQTCTVACKNIWTKR 45
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.3 bits (63), Expect = 8.6
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 299 NSETIINRLPSILEIGNKFANVNALKEPIPV-IPTIHYQMGGIPTNIYGQVIIPNNDNNK 357
N T + P ++ + + ++ A+KE V IP I P+ I NN
Sbjct: 109 NYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKH 168
Query: 358 IVNGLYAI 365
+ ++ +
Sbjct: 169 SIGLIWYL 176
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 28.3 bits (63), Expect = 9.8
Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 31/76 (40%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAY--RFISDSRDEAT--NF---RLDNLEDPY 749
CP Y + ++ + A LD+
Sbjct: 99 AKGKKELLDTCP------------------YGVMYWNEEENVAQKCTMCAHLLDDESWAP 140
Query: 750 RLFRCRSIMNCVDTCP 765
++ R C C
Sbjct: 141 KMPR------CAHNCG 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,318,285
Number of extensions: 777789
Number of successful extensions: 2147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1992
Number of HSP's successfully gapped: 76
Length of query: 786
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 685
Effective length of database: 3,881,772
Effective search space: 2659013820
Effective search space used: 2659013820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)