RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9575
(786 letters)
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 235 bits (599), Expect = 2e-71
Identities = 144/311 (46%), Positives = 191/311 (61%), Gaps = 4/311 (1%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
MRA+LQ++Q G A+LSKVFPTRSHTV+AQGGI+ +LGN +DNW WHM+DT+KGSDY+
Sbjct: 20 MRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYI 79
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
GDQDAIE+MCK P+ + ELEH G+PF R +G IYQRPFGG S NFG + AR A AD
Sbjct: 80 GDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD 139
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
RTGHALLHTLYQ+NL T F EW A+DL+ + +G ++G AL +ETG ++ +++ T+
Sbjct: 140 RTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATV 199
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240
LATGG GRI+ ++TNA INTGDG+GMA RAG+P + PT V G + + E
Sbjct: 200 LATGGAGRIYQSTTNAHINTGDGVGMAIRAGVP--VQDMMGGIPTKVTGQALTVNEKGED 257
Query: 241 EGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVML-DLRHIN 299
+ + GE L + + + L D +
Sbjct: 258 VVVPGLFAVGEIACVSVHG-ANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESD 316
Query: 300 SETIINRLPSI 310
E ++RL
Sbjct: 317 VEASLDRLNRW 327
Score = 92.6 bits (229), Expect = 5e-21
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 334 HYQMGGIPTNIYGQVIIPNNDN-NKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGR 392
MGGIPT + GQ + N + +V GL+A+GE ACVSVHGANRLG NSLLDL+VFGR
Sbjct: 234 QDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGR 293
Query: 393 SAGNHILSLELKKIHNKKLPINSIDIIIDRLSKLENN 429
+AG H+ ++ + + ++ +DRL++ NN
Sbjct: 294 AAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN 330
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 200 bits (509), Expect = 5e-59
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 33/294 (11%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ +L+LA + V +LSK T T AQGGI+A D+ H+ DT+ +
Sbjct: 20 LSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDET--DSIDSHVEDTLIAGAGI 76
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKN----GTIYQRPFGGHSSNFGEKPIARAC 116
D+ A+EF+ A V L G+ FD + + + GGHS R
Sbjct: 77 CDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHS-------HRRIL 129
Query: 117 AVADRTGHALLHTLYQRNL-HAKTNFFIEWMAIDLISDSEGD------ILGVVALEMETG 169
AD TG + TL + L H A+DLI + ++G
Sbjct: 130 HAADATGREVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKE 189
Query: 170 NIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHP----- 224
+ +K +LATGG +++ +TN I++GDG+ MA RAG + +
Sbjct: 190 TVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIAMAWRAGCRVANCGGVMVDDHGRTD 249
Query: 225 -TGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQE 277
G+ G + G+ G + NS E + ++ A D R
Sbjct: 250 VEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWS------AAEDITRRMPYAH 297
Score = 61.9 bits (149), Expect = 6e-11
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 336 QMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAG 395
GG+ + +G+ + GLYAIGE + +HGANR+ +NSLL+ LV+G SA
Sbjct: 236 NCGGVMVDDHGRTDVE---------GLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAA 286
Query: 396 NHILSLELKKIHNKKLP 412
I LP
Sbjct: 287 EDITRRMPYAHDISTLP 303
>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia
coli [TaxId: 562]}
Length = 311
Score = 193 bits (491), Expect = 2e-56
Identities = 88/297 (29%), Positives = 147/297 (49%), Gaps = 28/297 (9%)
Query: 1 MRASLQLAQ--EGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSD 58
+RA++ AQ +A++SKV+P RSHTVAA+GG +A + D++ +H DT+ G D
Sbjct: 18 LRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGD 75
Query: 59 YLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
+L +QD +++ P + +LE +G P+ R +G++ R FGG
Sbjct: 76 WLCEQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIER-------TWFA 128
Query: 119 ADRTGHALLHTLYQRNLHAKTNFFIE-WMAIDLISDSEGDILGVVALEMETGNIMILESK 177
AD+TG +LHTL+Q +L + +D++ D +G + G+VA+ M G ++ + +
Sbjct: 129 ADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRAN 187
Query: 178 ITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFW------QFHPTGVAGAG 231
++ATGG GR++ +TN I TGDG+GMA G+PL DM + G+ G
Sbjct: 188 AVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMGGIETDQNCETRIKGLFAVG 247
Query: 232 VLITEGVRGEGGILINSNGERFME---------RYAPILKDLAPRDFVSRAMDQEIK 279
+ G+ G + NS E + A + ++A E +
Sbjct: 248 ECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQR 304
Score = 50.4 bits (119), Expect = 4e-07
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 352 NNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKL 411
+ + + GL+A+GEC+ V +HGANRLG+NSL +L+VFGR AG + +
Sbjct: 233 DQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEA 292
Query: 412 PINSIDI-IIDRLSKLEN 428
I + + RL L N
Sbjct: 293 AIEAQAAGVEQRLKDLVN 310
>d1neka3 d.168.1.1 (A:236-355) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 120
Score = 167 bits (423), Expect = 3e-49
Identities = 77/120 (64%), Positives = 92/120 (76%), Gaps = 1/120 (0%)
Query: 217 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQ 276
ME WQFHPTG+AGAGVL+TEG RGEGG L+N +GERFMERYAP KDLA RD V+R++
Sbjct: 1 MEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMI 60
Query: 277 EIKEGRGC-GPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHY 335
EI+EGRGC GP H L L H+ E + +RLP ILE+ FA+V+ +KEPIPVIPT HY
Sbjct: 61 EIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 120
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 169 bits (428), Expect = 4e-47
Identities = 51/325 (15%), Positives = 100/325 (30%), Gaps = 48/325 (14%)
Query: 1 MRASLQLAQE----GLNVAILSKVFPTRSHTVAA-QGGISASLGNMS----KDNWHWHMF 51
A+ + A GL V ++ K RS VA I+ + ++ ++
Sbjct: 34 CGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVR 93
Query: 52 DTIKGSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKP 111
L +D + + V+ E +G+P + +G + +
Sbjct: 94 YVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYK 153
Query: 112 IARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNI 171
A A G ++ + + ++ + G V +
Sbjct: 154 PIIAEAAKMAVGEENIYE------------RVFIFELLKDNNDPNAVAGAVGFSVREPKF 201
Query: 172 MILESKITILATGGGGRIWA---------ASTNAFINTGDGLGMAARAGLPLEDMEFWQF 222
+ ++K ILATGG ++ + A +TG G M +AG L FW
Sbjct: 202 YVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQAGFWVC 261
Query: 223 HPT-----------GVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVS 271
P + + +G+ G +N +F +
Sbjct: 262 GPEDLMPEEYAKLFPLKYNRMTTVKGLFAI-GDCAGANPHKFSSGS------FTEGRIAA 314
Query: 272 RAMDQEIKEGRGCGPNKDHVMLDLR 296
+A + I E + D V+ +L+
Sbjct: 315 KAAVRFILEQKPNPEIDDAVVEELK 339
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 168 bits (424), Expect = 9e-47
Identities = 96/311 (30%), Positives = 136/311 (43%), Gaps = 35/311 (11%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK---DNWHWHMFDTIKGS 57
+RA++ Q+GL+ +LS + RSH+ AAQGG+ ASLGN DN H DT+KGS
Sbjct: 18 LRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGS 77
Query: 58 DYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNG-----------TIYQRPFGG---H 103
D+ DQ APK + EL +G+P+ R G TI + F H
Sbjct: 78 DWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIH 137
Query: 104 SSNFGEKPIARACAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVA 163
S +FG R C AD TGH +L + L + AI + +G G V
Sbjct: 138 SRDFGGTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIA-LIHQDGKCYGAVV 196
Query: 164 LEMETGNIMILESKITILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLE-DMEFWQF 222
++ TG+I+ +K T++ATGG GRI+ +TNA + G G +A G+ +M +
Sbjct: 197 RDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMGGIRT 256
Query: 223 HP------TGVAGAG---VLITEGVRGEGGILINS-------NGERFMERYAPILKDLAP 266
G+ AG G GG ++ GE F E A DL
Sbjct: 257 DYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCANTQVDLET 316
Query: 267 RDFVSRAMDQE 277
+ QE
Sbjct: 317 KTLEKFVKGQE 327
Score = 49.8 bits (117), Expect = 6e-07
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 360 NGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNHILSLELKKIHNKKLPINSIDI 418
GL++ GE AC +HG NRLG NS+ + +V G G + + N ++ + + +
Sbjct: 265 KGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYF----AEHCANTQVDLETKTL 319
>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 132
Score = 139 bits (350), Expect = 4e-39
Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 12/131 (9%)
Query: 217 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPI-----------LKDLA 265
MEF Q+HPTG+ G+G+L+TEG RGEGGIL+N NG R+++ Y +L
Sbjct: 1 MEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELG 60
Query: 266 PRDFVSRAMDQEIKEGRGCG-PNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALK 324
PRD VS+A E ++G P D V LDLRH+ + + RLP I E+ + V+ +K
Sbjct: 61 PRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVK 120
Query: 325 EPIPVIPTIHY 335
EPIPV PT HY
Sbjct: 121 EPIPVRPTAHY 131
>d2bs2a3 d.168.1.1 (A:251-371) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 121
Score = 136 bits (342), Expect = 3e-38
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 217 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQ 276
ME QFHPT + +G+L+TEG RG+GGIL + +G RFM Y P K+LA RD VSR M +
Sbjct: 1 MEAVQFHPTPLFPSGILLTEGCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIE 60
Query: 277 EIKEGRGCG-PNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHY 335
I++G+G P H+ LD+ + + I L + EI FA ++ ++ PV+P HY
Sbjct: 61 HIRKGKGVQSPYGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHY 120
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 132 bits (332), Expect = 1e-36
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 656 MTLFFKQFNSIKPFLITNNN-PPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714
MT F + +IKP++I N+ + +Q+P+Q CI CG C ACP F N
Sbjct: 1 MTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLN- 59
Query: 715 DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSI 774
F+GPA + A+R+ DSRD R+ L ++ C + C + CPK ++P +I
Sbjct: 60 PEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAI 119
Query: 775 NKIKELMI 782
+ K
Sbjct: 120 QQGKVESS 127
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 130 bits (327), Expect = 4e-36
Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 1/130 (0%)
Query: 656 MTLFFKQFNSIKPFLITNN-NPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714
M F+ Q+ IKP+L+ N NPP +E LQ P QR+ LDGLYECILC CCST+CPSFWWN
Sbjct: 1 MGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNP 60
Query: 715 DRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRSI 774
D+F+GPAGLL AYRF+ DSRD T+ RLD L D + +FRC SIMNCV CPKGLNP R+I
Sbjct: 61 DKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAI 120
Query: 775 NKIKELMIYR 784
IK +++ R
Sbjct: 121 GHIKSMLLQR 130
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 138
Score = 128 bits (322), Expect = 3e-35
Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 430 KGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTAR 489
+ E ++ +++ MQ+ VFR M G +++ ++ ER K D S FNT R
Sbjct: 1 RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQR 60
Query: 490 IEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKP 549
+E LELDNL+ETA AT SA R ESRGAH+ DF +RDD NWL HS++ + +
Sbjct: 61 VECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRS 120
Query: 550 VNLKPLTVKTVHPKK 564
VN++P PK
Sbjct: 121 VNMEPKLRPAFPPKI 135
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 133
Score = 118 bits (297), Expect = 6e-32
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 657 TLFFKQFNSIKPFLITN--NNPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNS 714
F ++ ++ ++ + E P + + L CI CGCC AC +
Sbjct: 3 NWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRE 62
Query: 715 DRFVGPAGLLQAYRFISDSRDEATNFR-LDNLEDPYRLFRCRSIMNCVDTCPKGLNPNRS 773
D FVG AGL + RF+ D DE T+ + + D +F C +++ C D CPK L
Sbjct: 63 D-FVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSK 121
Query: 774 INKIKELMI 782
I ++ M+
Sbjct: 122 IAYLRRKMV 130
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 117 bits (294), Expect = 1e-31
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 217 MEFWQFHPTGVA---GAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRA 273
+EF QFHPT + L+TE +RGEG L +G RFM + +LAPRD V+RA
Sbjct: 1 LEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTRFMPDFDE-RGELAPRDIVARA 59
Query: 274 MDQEIKEGRGCGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTI 333
+D E+K D + LD+ H ++ I P I E ++ +EP+P++P
Sbjct: 60 IDHEMKR-----LGADCMFLDISHKPADFIRQHFPMIYEKL-LGLGIDLTQEPVPIVPAA 113
Query: 334 HY 335
HY
Sbjct: 114 HY 115
>d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 134
Score = 115 bits (289), Expect = 7e-31
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 431 GSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARI 490
G E+ + +++ M+ CG++RT +LM+ K+ L ER K + D S +FNT +
Sbjct: 2 GGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLL 61
Query: 491 EALELDNLIETAKATISSAISRKESRGAHAHND--FKNRDDINWLKHSIWYSNGN---RI 545
+EL + + A+ SA++RKESRGAH D RDD+N+LKH++ + + + R+
Sbjct: 62 YTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRL 121
Query: 546 EFKPVNLKPL 555
E+ V + L
Sbjct: 122 EYSDVKITTL 131
>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 198
Score = 115 bits (288), Expect = 7e-30
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 430 KGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTAR 489
KG+E V + N ++ M + G+FR ++ K++ L ++ K + K+K N
Sbjct: 1 KGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKELEELYKKSKNVGIKNKRLHANPEL 60
Query: 490 IEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDDINWLKHSIWYSNGNRIEFKP 549
EA + +++ A A+ R ESRGAH D+ RDDINWL ++
Sbjct: 61 EEAYRVPMMLKVALCVAKGALDRTESRGAHNREDYPKRDDINWLNRTLASWPNPEQTLPT 120
Query: 550 VNLKPLTVKT--VHPKK 564
+ + L V + P
Sbjct: 121 LEYEALDVNEMEIAPGY 137
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 105
Score = 106 bits (266), Expect = 5e-28
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 552 LKPLTVKTVHPKKHHDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGV 611
+K L ++ V D P+ + V + LLDAL IK ++ L+ R SCR +
Sbjct: 3 MKNLKIEVVRYNPEVDTAPHSAFYEVPYDATT-SLLDALGYIKDNLAPDLSYRWSCRMAI 61
Query: 612 CGSDAMNINGKNGLACITNLNELKQPIIIRPLPGLPVIRDLVVD 655
CGS M +N LAC T L + + + L P+ RDLVVD
Sbjct: 62 CGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVD 105
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 112 bits (280), Expect = 8e-28
Identities = 56/281 (19%), Positives = 99/281 (35%), Gaps = 36/281 (12%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKD-----NWHWHMFDTIK 55
A++ G V ++ K + A GG++A+ + K + DT+K
Sbjct: 29 FSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMK 88
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G + D ++ + + V + G GG S N +P A
Sbjct: 89 GGQNINDPALVKVLSSHSKDSVDWMTAMGADLT-------DVGMMGGASVNRAHRPTGGA 141
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
G ++ LY + + + I+++ D +G + G++ M G + +
Sbjct: 142 G-----VGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWV-K 195
Query: 176 SKITILATGGGGRIW------------AASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
+ ILATGG + STN GDGL +A AG L+DM++
Sbjct: 196 ADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIDTK 255
Query: 224 PTGVAGAGVLITEGVRGEGGIL-----INSNGERFMERYAP 259
+ +I G+ G G + N G +
Sbjct: 256 AEVMNAKKQVI-PGLYGAGEVTGGVHGANRLGGNAISDIIT 295
Score = 65.4 bits (158), Expect = 5e-12
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 353 NDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGRSAGNH 397
N +++ GLY GE VHGANRLG N++ D++ FGR AG
Sbjct: 260 NAKKQVIPGLYGAGEVTG-GVHGANRLGGNAISDIITFGRLAGEE 303
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein,
N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Length = 106
Score = 102 bits (255), Expect = 1e-26
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 569 KPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACI 628
KP+ Q++ + + + + L+ I+ D L CR G+CGS M ING+ LAC
Sbjct: 20 KPHFQEYKIEEAPSM-TIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACR 78
Query: 629 TNLNELKQPII-IRPLPGLPVIRDLVVD 655
T + + +I + PLP +I+DL VD
Sbjct: 79 TLTKDFEDGVITLLPLPAFKLIKDLSVD 106
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 106
Score = 96.5 bits (240), Expect = 1e-24
Identities = 56/93 (60%), Positives = 67/93 (72%), Gaps = 5/93 (5%)
Query: 567 DIKPYMQKFLVNLSSNDKM-LLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGL 625
D P MQ + + M LLDAL ++ + D SL+ RRSCREGVCGSD +N+NGKNGL
Sbjct: 15 DDAPRMQDYTLEADEGRDMMLLDALIQL-KEKDPSLSFRRSCREGVCGSDGLNMNGKNGL 73
Query: 626 ACITNLNELKQP---IIIRPLPGLPVIRDLVVD 655
ACIT ++ L QP I+IRPLPGLPVIRDLVVD
Sbjct: 74 ACITPISALNQPGKKIVIRPLPGLPVIRDLVVD 106
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 99.3 bits (246), Expect = 3e-23
Identities = 54/257 (21%), Positives = 95/257 (36%), Gaps = 30/257 (11%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIK 55
ASL + G NV ++ K + +++ + GG++A D W + D +K
Sbjct: 32 FNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMK 91
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G D + + +++ V LE G D + GG
Sbjct: 92 GGRQQNDIKLVTILAEQSADGVQWLESLGANLD-------DLKRSGGAR-----VDRTHR 139
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
+G ++ TL + + + + L+ + + ++G V TG MI
Sbjct: 140 PHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMI-G 198
Query: 176 SKITILATGGGGRI------------WAASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
+K +LATGG G S+N TGDG+ MA G + D+++ Q
Sbjct: 199 AKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAA 258
Query: 224 PTGVAGAGVLITEGVRG 240
A L ++ + G
Sbjct: 259 INTTASVLDLQSKPIDG 275
Score = 78.9 bits (193), Expect = 2e-16
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 330 IPTIHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLV 389
N V+ + +K ++GL+A GE VHG NRLG N++ D +V
Sbjct: 247 ASMTDIDWVQAAINTTASVL---DLQSKPIDGLFAAGEVTG-GVHGYNRLGGNAIADTVV 302
Query: 390 FGRSAGNHI 398
FGR AG++
Sbjct: 303 FGRIAGDNA 311
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 96.3 bits (238), Expect = 1e-22
Identities = 35/254 (13%), Positives = 69/254 (27%), Gaps = 5/254 (1%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ ++L LA++G +V IL++ P + + + + S +
Sbjct: 19 LSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFK 78
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
+ + K + I SS I
Sbjct: 79 KWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPLPSSECPPGAIGVTYDTLS 138
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
L + L F L +G L V A + +I ++ +
Sbjct: 139 VHAPKYCQYLARE-LQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQARG 197
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGVRG 240
RI T L + + ++ E H G + AG + G
Sbjct: 198 GPRVEAERIVLP----LDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAE 253
Query: 241 EGGILINSNGERFM 254
+ L++ +R+
Sbjct: 254 DVAQLVDEAFQRYH 267
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 93.9 bits (232), Expect = 2e-21
Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 30/242 (12%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSK-----DNWHWHMFDTIK 55
+ A++ G V +L K +T A GG++A+ D + DT+K
Sbjct: 36 LAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMK 95
Query: 56 GSDYLGDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARA 115
G + D + ++ + + + L G GG S N +P A
Sbjct: 96 GGRNINDPELVKVLANNSSDSIDWLTSMGADMT-------DVGRMGGASVNRSHRPTGGA 148
Query: 116 CAVADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILE 175
A L+ + T+ + + ++ D+ G + GV+ TG +++
Sbjct: 149 GVGAHV-----AQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIK 202
Query: 176 SKITILATGGGGRIW------------AASTNAFINTGDGLGMAARAGLPLEDMEFWQFH 223
+ ++A GG + +TN TGDGL +A +AG D+E
Sbjct: 203 ADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLV 262
Query: 224 PT 225
Sbjct: 263 ID 264
Score = 84.6 bits (208), Expect = 2e-18
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 333 IHYQMGGIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVHGANRLGTNSLLDLLVFGR 392
+MGG+ + +V + K + GLYA GE VHGANRLG N++ D++ +GR
Sbjct: 254 RDLEMGGLVIDTKAEVK--SEKTGKPITGLYAAGEVTG-GVHGANRLGGNAISDIVTYGR 310
Query: 393 SAGNHI 398
AG
Sbjct: 311 IAGASA 316
>d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 141
Score = 84.7 bits (209), Expect = 6e-20
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 441 DIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSKIFNTARIEALELDNLIE 500
++K M Y T + + + + + A EL + +
Sbjct: 18 RLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAWELVHRVW 77
Query: 501 TAKATISSAISRKESRGA--HAHNDFKNRDDINWLKHSIWYSNGN----RIEFKPV 550
TA+A + + RKE+R + D+ +D W + E P
Sbjct: 78 TAEAHVRHMLFRKETRWPGYYYRTDYPELNDEEWKCFVCSKYDAEKDEWTFEKVPY 133
>d1qo8a3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory
fumarate reductase) {Shewanella frigidimarina [TaxId:
56812]}
Length = 146
Score = 80.8 bits (198), Expect = 1e-18
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 42/153 (27%)
Query: 223 HPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGR 282
HPT + +LI+E VRG G +++N +G RF+ RD S A+ ++ +
Sbjct: 1 HPTVGKDSRILISETVRGVGAVMVNKDGNRFISEL-------TTRDKASDAILKQPGQFA 53
Query: 283 GCGPNKDHVML--DLRHINSETIINRLPSILE---------------------------- 312
+ +R + ++ + ++ +
Sbjct: 54 WIIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKD 113
Query: 313 --IGNKFANVNALKEP---IPVIPTIHYQMGGI 340
G +N + P + V P IH+ MGG+
Sbjct: 114 TAFGRADMPLNMTQSPYYAVKVAPGIHHTMGGV 146
>d1chua1 a.7.3.1 (A:423-533) L-aspartate oxidase {Escherichia coli
[TaxId: 562]}
Length = 111
Score = 78.6 bits (193), Expect = 4e-18
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 424 SKLENNKGSESVQSVANDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERRKYISFKDKSK 483
S++EN +Q +++R M +Y G+ RT K ++ ++I +L + +
Sbjct: 3 SRVENPDERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQE-----IDEYYA 57
Query: 484 IFNTARIEALELDNLIETAKATISSAISRKESRGAHAHNDFKNRDD 529
F + LEL NL++ A+ + A+ RKESRG H D+
Sbjct: 58 HFRVSNN-LLELRNLVQVAELIVRCAMMRKESRGLHFTLDYPELLT 102
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory
fumarate reductase) {Shewanella frigidimarina [TaxId:
56812]}
Length = 143
Score = 77.2 bits (189), Expect = 2e-17
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 16/156 (10%)
Query: 221 QFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKE 280
Q HPT GV++TE VRG G IL+N G+RF+ ++ RD S A+ + +
Sbjct: 2 QAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVN-------EITTRDKASAAILAQTGK 54
Query: 281 GRG--CGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQMG 338
+ + + + S++++G ++ V
Sbjct: 55 SAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKME-GIDGKALTETVARYNSLVSS 113
Query: 339 GIPTNIYGQVIIPNNDNNKIVNGLYAIGECACVSVH 374
G T+ + + +P + G Y E VH
Sbjct: 114 GKDTD-FERPNLP----RALNEGNYYAIEVTPG-VH 143
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory
fumarate reductase) {Shewanella putrefaciens [TaxId:
24]}
Length = 146
Score = 76.8 bits (188), Expect = 4e-17
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 219 FWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEI 278
+ Q HPT GV+ITE VRG G I++N G RFM + RD S A+ Q+
Sbjct: 1 YIQAHPTYSPAGGVMITEAVRGNGAIVVNREGNRFMNE-------ITTRDKASAAILQQK 53
Query: 279 KEGRG--CGPNKDHVMLDLRHINSETIINRLPSILEIGNKFANVNALKEPIPVIPTIHYQ 336
E + + + I+ +I E+ + +V A + V +
Sbjct: 54 GESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQI-DVPAAELAKTVTAYNGFV 112
Query: 337 MGGIP 341
G
Sbjct: 113 KSGKD 117
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 42.7 bits (99), Expect = 8e-05
Identities = 40/260 (15%), Positives = 75/260 (28%), Gaps = 52/260 (20%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ A++ A+EG NV +L K + GG + D H+ +
Sbjct: 15 LMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSA 74
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAVAD 120
E ++ E+ G+ +G ++
Sbjct: 75 FSIFNNED-------IITFFENLGVKLKEEDHGRMFPV---------------------S 106
Query: 121 RTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKITI 180
+++ L R + ++ A+ ++TG ++ E+ +
Sbjct: 107 NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENG----QTKAVILQTGEVL--ETNHVV 160
Query: 181 LATGGGGRIWAASTNAFINTGDGLGMAARAGLPL--------EDMEFWQFHPTGVAGAGV 232
+A GG S +TGDG A +AG + E + G+
Sbjct: 161 IAVGG------KSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGL 214
Query: 233 LITEGV----RGEGGILINS 248
V GG I S
Sbjct: 215 YFCGEVLDIHGYTGGYNITS 234
>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}
Length = 117
Score = 37.2 bits (85), Expect = 0.001
Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI C C+ CP L+ A + + + C
Sbjct: 21 CIQCNQCAFVCPHSAIL-PVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMG 79
Query: 757 IMNCVDTCPKG 767
NC D CP
Sbjct: 80 CGNCADICPPK 90
Score = 29.1 bits (64), Expect = 0.80
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 694 LYECILCGCCSTACP 708
+C+ CG C+ CP
Sbjct: 74 TLDCMGCGNCADICP 88
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 32.9 bits (74), Expect = 0.020
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 14/71 (19%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
C+LCG C AC + + D+ C
Sbjct: 21 CLLCGRCVNACGKNT-------ETYAMKFLNKNGKTIIGAEDEKCFDDTN-------CLL 66
Query: 757 IMNCVDTCPKG 767
C+ CP
Sbjct: 67 CGQCIIACPVA 77
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 34.5 bits (78), Expect = 0.021
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 685 PSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDN 744
+ +GL +CI C C+ ACP + +S A + ++
Sbjct: 16 HVLTRHPNGLEKCIGCSLCAAACP-----AYAIYVEPAENDPENPVSAGERYAKVYEINM 70
Query: 745 LEDPYRLFRCRSIMNCVDTCP 765
RC C + CP
Sbjct: 71 -------LRCIFCGLCEEACP 84
>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 145
Score = 33.6 bits (77), Expect = 0.032
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 246 INSNGERFMERYAPILKDLAPRDFVSR--------AMDQEIKEGRG-CGPNKDHVMLD-- 294
N+ GE +++ A L+ P + EI +G + + + +
Sbjct: 29 KNAYGEEYIKTRAAELEKYKPYGAAQPIPTPLRNHQVMLEIMDGNQPIYMHTEEALAELA 88
Query: 295 ------LRHINSETIINRLPSILEIGNKFA--NVNALKEPIPVIPTIHYQMGG 339
L+HI E + L + +A N++ ++P P Y MG
Sbjct: 89 GGDKKKLKHIYEEAFEDFLDMTVSQALLWACQNIDPQEQPSEAAPAEPYIMGS 141
>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId:
2288]}
Length = 103
Score = 32.5 bits (73), Expect = 0.040
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 19/71 (26%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI G C ACP +++ D + + DP C
Sbjct: 45 CIADGSCINACPV---------------NVFQWY----DTPGHPASEKKADPVNEQACIF 85
Query: 757 IMNCVDTCPKG 767
M CV+ CP
Sbjct: 86 CMACVNVCPVA 96
Score = 27.8 bits (61), Expect = 1.9
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 696 ECILCGCCSTACPS 709
CI C C CP
Sbjct: 82 ACIFCMACVNVCPV 95
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId:
879]}
Length = 58
Score = 30.4 bits (68), Expect = 0.095
Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 25/72 (34%)
Query: 696 ECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCR 755
+C+ C C CP + ++ I+ D
Sbjct: 7 DCMACEACVEICPDVFEMNEEG-------DKAVVINPDSD------------------LD 41
Query: 756 SIMNCVDTCPKG 767
+ +D+CP
Sbjct: 42 CVEEAIDSCPAE 53
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 30.8 bits (69), Expect = 0.12
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 26/71 (36%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI C CS CP A + + C +
Sbjct: 34 CIGCDTCSQYCP--------------------------TAAIFGEMGEPHSIPHIEACIN 67
Query: 757 IMNCVDTCPKG 767
C+ CP+
Sbjct: 68 CGQCLTHCPEN 78
Score = 27.7 bits (61), Expect = 1.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 696 ECILCGCCSTACP 708
CI CG C T CP
Sbjct: 64 ACINCGQCLTHCP 76
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC
{Synechococcus elongatus [TaxId: 32046]}
Length = 80
Score = 30.5 bits (68), Expect = 0.14
Identities = 13/71 (18%), Positives = 16/71 (22%), Gaps = 20/71 (28%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI C C ACP+ + +A R C
Sbjct: 10 CIGCTQCVRACPT---------------DVLEMVPWDGCKAGQIAS-----SPRTEDCVG 49
Query: 757 IMNCVDTCPKG 767
C CP
Sbjct: 50 CKRCETACPTD 60
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 30.4 bits (69), Expect = 0.14
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 419 IIDRLSKLENNKGSESVQSVANDIR-KTMQNYCGVFRTDKLMKNGYKKIMILDERR--KY 475
I+ + N+ GS VQ + +Q + + D + G + M+ R+ Y
Sbjct: 10 IVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLR-MVSQRRKLLDY 68
Query: 476 ISFKDKSKIFNTARIEALEL 495
+ KD ++ IE L L
Sbjct: 69 LKRKDVARYTRL--IERLGL 86
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3,
Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Length = 151
Score = 31.6 bits (71), Expect = 0.16
Identities = 13/71 (18%), Positives = 16/71 (22%), Gaps = 18/71 (25%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI C C V +L + +F L
Sbjct: 86 CIHCKRCVRYFEE--------VPGDEVLDFIERGVHTFIGTMDFGLP----------SGF 127
Query: 757 IMNCVDTCPKG 767
N D CP G
Sbjct: 128 SGNITDICPVG 138
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 32.2 bits (72), Expect = 0.18
Identities = 24/216 (11%), Positives = 56/216 (25%), Gaps = 45/216 (20%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
+ + QLA+ G +V + + + GG ++ +
Sbjct: 17 LFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGF-----------CNFTNLEVTPAHYLS 65
Query: 61 GDQDAIEFMCKEAP--KVVYELEHFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
+ ++ + + G+ + + G ++
Sbjct: 66 QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEG------------------ 107
Query: 119 ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKI 178
++ L + + + + V N + K
Sbjct: 108 ----AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFV----LQVNSTQWQCKN 159
Query: 179 TILATGGGGRIWAASTNAFINTGDGLGMAARAGLPL 214
I+ATGG S T G +A + G+P+
Sbjct: 160 LIVATGG------LSMPGLGATPFGYQIAEQFGIPV 189
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 80
Score = 29.8 bits (67), Expect = 0.22
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNL 631
+ +L+D L +++ C +G CG+ + ++GK ACI +
Sbjct: 20 NDLLVDVLR----SQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKM 64
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 29.2 bits (65), Expect = 0.24
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 697 CILCGCCSTACP 708
CI CG C+ CP
Sbjct: 37 CIDCGACAGVCP 48
Score = 27.2 bits (60), Expect = 1.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 697 CILCGCCSTACP 708
CI CG C CP
Sbjct: 8 CISCGACEPECP 19
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 65
Score = 28.8 bits (64), Expect = 0.34
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 697 CILCGCCSTACPS 709
C+ CG C T CP
Sbjct: 45 CMYCGNCYTMCPG 57
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus
asaccharolyticus [TaxId: 1258]}
Length = 55
Score = 28.4 bits (63), Expect = 0.37
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 696 ECILCGCCSTACP 708
CI CG C++ CP
Sbjct: 35 SCIDCGSCASVCP 47
Score = 27.3 bits (60), Expect = 1.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 697 CILCGCCSTACP 708
CI CG C CP
Sbjct: 8 CIACGACKPECP 19
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit
QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Length = 81
Score = 29.0 bits (65), Expect = 0.42
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629
L DAL ++ + C +GVCGS + I+G +C+T
Sbjct: 22 RMHLADALR----EVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLT 64
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 79
Score = 28.6 bits (64), Expect = 0.50
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629
+L+ + + + C CG+ ++++G + +C
Sbjct: 20 RTLLIHFIR----EQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTM 62
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 28.6 bits (63), Expect = 0.53
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 22/71 (30%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI C++ CP F + +A ++
Sbjct: 11 CIGDAICASLCP------------------DVFEMNDEGKAQPKVEVIEDEE----LYNC 48
Query: 757 IMNCVDTCPKG 767
++ CP
Sbjct: 49 AKEAMEACPVS 59
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio gigas [TaxId: 879]}
Length = 80
Score = 28.6 bits (64), Expect = 0.54
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACITNL 631
+ +L D L ++ C +G CG+ ++ ++GK AC+T +
Sbjct: 20 EALLSDVLR----QQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKM 64
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 28.7 bits (64), Expect = 0.58
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 572 MQKFLVN------LSSNDKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGL 625
+ + +N L ++ +LLD L + ++ C G CG+ + ++ + L
Sbjct: 4 ILRLTLNGRAREDLVPDNMLLLDYLR----ETVGLTGTKQGCDGGECGACTVLVDDRPRL 59
Query: 626 ACIT 629
AC T
Sbjct: 60 ACST 63
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId:
1484]}
Length = 77
Score = 28.5 bits (63), Expect = 0.59
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 696 ECILCGCCSTACP 708
CI CG C CP
Sbjct: 38 VCIDCGACEAVCP 50
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 30.9 bits (69), Expect = 0.71
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 697 CILCGCCSTACPSFWWNSD 715
CI C CS C + W + +
Sbjct: 16 CIGCHTCSVTCKNVWTSRE 34
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 79
Score = 28.2 bits (63), Expect = 0.78
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 583 DKMLLDALHRIKYDIDDSLTLRRSCREGVCGSDAMNINGKNGLACIT 629
+L+ L + + C CG+ ++I+G++ +C
Sbjct: 20 RTLLIHFLR----EELNLTGAHIGCETSHCGACTVDIDGRSVKSCTH 62
>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
(beta) subunit {Escherichia coli [TaxId: 562]}
Length = 244
Score = 30.2 bits (67), Expect = 0.80
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 676 PPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRD 735
PP + R K++D + CI C C AC S W + VG + ++
Sbjct: 18 PPSQVRDYKAEVAKLID-VSTCIGCKACQVAC-SEWNDIRDEVGHCVGVYDNPADLSAKS 75
Query: 736 EATNFRLDNLEDP--YRLFRCRSIMNCVDTCPK 766
+ ++ L R M+C D
Sbjct: 76 WTVMRFSETEQNGKLEWLIRKDGCMHCEDPGCL 108
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 173
Score = 29.3 bits (65), Expect = 1.2
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 696 ECILCGCCSTACP 708
C C C + CP
Sbjct: 141 TCTGCTLCLSVCP 153
Score = 27.0 bits (59), Expect = 6.3
Identities = 13/69 (18%), Positives = 16/69 (23%), Gaps = 24/69 (34%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGPAGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCRS 756
CI CG C C Y+ I + D C
Sbjct: 109 CINCGKCYMTCND---------------SGYQAIQFDPETHLPTVTD---------TCTG 144
Query: 757 IMNCVDTCP 765
C+ CP
Sbjct: 145 CTLCLSVCP 153
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 27.8 bits (62), Expect = 1.2
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 419 IIDRLSKLENNKGSESVQSVA---NDIRKTMQNYCGVFRTDKLMKNGYKKIMILDERR-- 473
II++ EN+ GS VQ +A I + + V + D + G K M+ RR
Sbjct: 9 IIEQFKVHENDTGSPEVQ-IAILTEQINN-LNEHLRVHKKDHHSRRGLLK-MVGKRRRLL 65
Query: 474 KYISFKD 480
Y+ KD
Sbjct: 66 AYLRNKD 72
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 28.8 bits (63), Expect = 2.5
Identities = 29/214 (13%), Positives = 58/214 (27%), Gaps = 27/214 (12%)
Query: 180 ILATGGGGRIWAASTNAF------INTGDGLGMAA--RAGLPLEDMEFWQFHPTGVAGAG 231
+ G GR +A A ++ LG + A +P
Sbjct: 47 FIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFS 106
Query: 232 VLITEGVRGEGGILINSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHV 291
E + I + F + + + I + V
Sbjct: 107 GQYWFPDMTEKVVGIKEVVDLFRAGRN-GPHGIMNFQSKEQLNLEYILNCPAKVIDNHTV 165
Query: 292 MLDLRHINSETII---NRLPSILEIGNKFANVNALKEPIPVIPTIHYQMGGIPTNIYGQV 348
+ ++ +I P L++ + + E ++ G + N Y Q
Sbjct: 166 EAAGKVFKAKNLILAVGAGPGTLDVPEQPRS----AELAKILGLDLGPKGEVLVNEYLQT 221
Query: 349 IIPNNDNNKIVNGLYAIGECACVS--VHGANRLG 380
+PN +YA+G+ + A + G
Sbjct: 222 SVPN---------VYAVGDLIGGPMEMFKARKSG 246
>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL,
N-terminal domain {Pelobacter acidigallici [TaxId:
35816]}
Length = 195
Score = 28.5 bits (62), Expect = 2.6
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 697 CILCGCCSTACPSFWWNSDRFVGP-AGLLQAYRFISDSRDEATNFRLDNLEDPYRLFRCR 755
C C C C + + G A + + +R+++ R E + +R
Sbjct: 13 CQDCNNCFMGC-MDEHELNEWPGYTASMQRGHRWMNIERRERGTYP-----RNDINYRPT 66
Query: 756 SIMNCVDTCPKGLNPNRSINKIKELMIYR 784
M+C + + +++
Sbjct: 67 PCMHCENAPCVAKGNGAVYQREDGIVLID 95
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 26.7 bits (59), Expect = 3.5
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 675 NPPEKERLQSPSQRKILDGLYECILCGCCSTACPSFWWNSDRF 717
N P + +L L Y+ G C+ PS DR
Sbjct: 21 NLPNELKLD-------LYKYYKQSTIGNCNIKEPSAHKYIDRK 56
>d1hkqa_ a.4.5.10 (A:) Replication protein A, repA {Pseudomonas
syringae pv. savastanoi [TaxId: 29438]}
Length = 125
Score = 27.1 bits (60), Expect = 3.8
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 23/111 (20%)
Query: 476 ISFKDKSKIFNTARIEALELDNL----IETAKATISSAISRKESRGAHAHNDFKNRDDIN 531
I + I A + ++ A A + A ++ +R + K + +
Sbjct: 27 IDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNRDIRRYVKGKVVERMR 86
Query: 532 WLKHSIWYSNGNRIEFKPVNLKPLTVKTVHPKKHHDIKPYMQKFLVNLSSN 582
W+ H + +E I P+ L L
Sbjct: 87 WVFHVKYREGQGCVELGF---------------SPTIIPH----LTMLHKE 118
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 28.2 bits (62), Expect = 3.8
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 241 EGGILI---NSNGERFMERYAPILKDLAPRDFVSRAMDQEIKEGRGCGPNKDHVMLDLR 296
+G I+ + K + +++ + + P HV+LDLR
Sbjct: 199 DGAIIHYHNTVPEKLMPREPFETFKRIT-KEYGYDVEKLNELKIKRYAPGVWHVVLDLR 256
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio
vulgaris [TaxId: 881]}
Length = 69
Score = 25.8 bits (57), Expect = 4.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 697 CILCGCCSTACPS 709
C+ CG C T CP+
Sbjct: 50 CMYCGNCYTMCPA 62
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 27.9 bits (61), Expect = 4.4
Identities = 22/101 (21%), Positives = 34/101 (33%)
Query: 1 MRASLQLAQEGLNVAILSKVFPTRSHTVAAQGGISASLGNMSKDNWHWHMFDTIKGSDYL 60
A+++ AQ G N A + K + S +L N S H +G D
Sbjct: 18 YVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVN 77
Query: 61 GDQDAIEFMCKEAPKVVYELEHFGMPFDRNKNGTIYQRPFG 101
GD ++A + G+ KN Y + G
Sbjct: 78 GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG 118
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme
[TaxId: 117187]}
Length = 349
Score = 27.8 bits (61), Expect = 5.6
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 176 SKITILATGGGGRIWAASTNAFINTG--DGLGMAARAGLPLEDMEFWQFHPTGVAGAGVL 233
+ ++ + + + + + F+P ++G+ +
Sbjct: 13 TAVSSCKNIVLNGFQVPTGKQLDLSSLQNDSTVTFKGTTTFATTADNDFNPIVISGSNIT 72
Query: 234 ITEGVRGEGGILINSNGERFMERY 257
IT G G +I+ NG+ + +
Sbjct: 73 IT----GASGHVIDGNGQAYWDGK 92
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 27.1 bits (60), Expect = 7.9
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 566 HDIKPYMQKFLVNLSSNDKMLLDALHRIKYDIDDSLTLRRSCRE 609
+KPY++ + N+K + ++L+ + +D LR S
Sbjct: 265 PLVKPYLRSVQ---NHNNKSVNESLNNLFITEEDYQALRTSIDA 305
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4,
Nqo4 {Thermus thermophilus [TaxId: 274]}
Length = 375
Score = 27.1 bits (59), Expect = 9.1
Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 17/199 (8%)
Query: 61 GDQDAIEFMCKEAPKVVYELE--HFGMPFDRNKNGTIYQRPFGGHSSNFGEKPIARACAV 118
++ + + P + E E P + + P RA V
Sbjct: 151 EFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGV 210
Query: 119 ADRTGHALLHTLYQRNLHAKTNFFIEWMAIDLISDSEGDILGVVALEMETGNIMILESKI 178
A ++ Y E D+ GD+ + + + ++
Sbjct: 211 NYDVRKAYPYSGY------------ETYTFDVPLGERGDVFDRMLVRIRE-MRESVKIIK 257
Query: 179 TILATGGGGRIWAASTNAFINTGDGLGMAARAGLPLEDMEFWQFHPTGVAGAGVLITEGV 238
L G + + L + A + FHP G + TE
Sbjct: 258 QALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPP--KGEVYVPTESA 315
Query: 239 RGEGGILINSNGERFMERY 257
RGE G I S+G R
Sbjct: 316 RGELGYYIVSDGGSMPYRV 334
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.416
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,033,145
Number of extensions: 149364
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 95
Length of query: 786
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 693
Effective length of database: 1,130,706
Effective search space: 783579258
Effective search space used: 783579258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)