BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9576
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 163/337 (48%), Positives = 217/337 (64%), Gaps = 11/337 (3%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXX 60
M+ L +L+ AK S A +++L+N + YLGK G LT + ++ + ER G
Sbjct: 1 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI 60
Query: 61 XXXXXXXXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
+ L+ L L ID++LPGR GGLHP+ RT++RIE F
Sbjct: 61 NEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE D++NF ALN P +HPAR+ HDTF+ + LLRT TS +Q
Sbjct: 121 GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF------DTTRLLRTQTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR K +PPI++I GRVYR D D TH+PMFHQ+EGL +D NISF++LKG +F+R F
Sbjct: 175 IRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +QIRFRPSYFPFTEPSAE+D++ ++ G WLE+ G G V+P VL N+ +DPE
Sbjct: 235 FEED-LQIRFRPSYFPFTEPSAEVDVMGKN----GKWLEVLGCGMVHPNVLRNVGIDPEV 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG+ DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQF 326
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 133/350 (38%), Positives = 200/350 (57%), Gaps = 23/350 (6%)
Query: 7 LLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEXXXXXXXX 66
+L +A A + L+ K+ YLGK G LTQ +K + + + ER++ G+
Sbjct: 1 MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAA 60
Query: 67 XXXXXXXHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFD 126
L++ LK +L+ ++D++LPG GGLHPI + +IF ++G+
Sbjct: 61 LEAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQ 120
Query: 127 ITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKP---------LLRTHTS 177
+GPE+E++F NF ALN P++HPAR M DTF++ P LLRTHTS
Sbjct: 121 AVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180
Query: 178 PMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236
PMQ+RY + PP +++ GRV+R + +D+TH +FHQ+EGL + + I+ + LKG
Sbjct: 181 PMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYEL 240
Query: 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296
+ F D+ ++RF+P YFPF EP A+ + + +G G WLE+ GAG V+PKV ++
Sbjct: 241 AQALFGPDS-KVRFQPVYFPFVEPGAQFAVWWPEG---GKWLELGGAGMVHPKVFQAVDA 296
Query: 297 DPEKY---------IGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
E+ GFAFG G+ERL MLRYGI D+R F+ G + FL+QF
Sbjct: 297 YRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 346
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/267 (47%), Positives = 169/267 (63%), Gaps = 17/267 (6%)
Query: 81 KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNF 140
++L L ID+TLP R + G HP+ RT+E IE +F +G++I DG E+E D+ NF
Sbjct: 27 EKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNF 86
Query: 141 TALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY--SKINKPPIKVITSGR 198
ALN PK+HPAR M D+FYI ++ L+RTHTSP+Q R + + P+K+I G+
Sbjct: 87 EALNLPKSHPARDMQDSFYI------TDEILMRTHTSPVQARTMEKRNGQGPVKIICPGK 140
Query: 199 VYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPF 257
VYR DS D+THS F QIEGL +DKNI SDLKG + F +D +IR RPSYFPF
Sbjct: 141 VYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADR-EIRLRPSYFPF 199
Query: 258 TEPSAEIDIVFQDGPLKG-------NWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGL 310
TEPS E+D+ KG W+EI GAG V+P VL D +Y GFAFG G
Sbjct: 200 TEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGP 259
Query: 311 ERLTMLRYGIDDLRLFYKGNINFLKQF 337
+R+ ML+YGI+D+R FY ++ FL+QF
Sbjct: 260 DRIAMLKYGIEDIRYFYTNDVRFLEQF 286
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 163/266 (61%), Gaps = 23/266 (8%)
Query: 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHP 150
++D++LPG GGLHPI + +IF ++G+ +GPE+E++F NF ALN P++HP
Sbjct: 1 RVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHP 60
Query: 151 ARSMHDTFYIKNRYVSNNKP---------LLRTHTSPMQIRYSKINKPPIKVITSGRVYR 201
AR M DTF++ P LLRTHTSPMQ+RY + PP +++ GRV+R
Sbjct: 61 ARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFR 120
Query: 202 ID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEP 260
+ +D+TH +FHQ+EGL + + I+ + LKG + F D+ ++RF+P YFPF EP
Sbjct: 121 FEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPDS-KVRFQPVYFPFVEP 179
Query: 261 SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKY---------IGFAFGSGLE 311
A+ + + +G G WLE+ GAG V+PKV ++ E+ GFAFG G+E
Sbjct: 180 GAQFAVWWPEG---GKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVE 236
Query: 312 RLTMLRYGIDDLRLFYKGNINFLKQF 337
RL MLRYGI D+R F+ G + FL+QF
Sbjct: 237 RLAMLRYGIPDIRYFFGGRLKFLEQF 262
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 137/275 (49%), Gaps = 53/275 (19%)
Query: 102 NKGGLHPIMRTLERIEKIFYSIGFDITDGPE---IETDFNNFTALNSPKNHPARSMHDTF 158
+ G LHP+++ + +IF +GF T+ P IE+ F NF AL P+ HPAR HDTF
Sbjct: 220 DSGHLHPLLKVRSQFRQIFLEMGF--TEMPTDNFIESSFWNFDALFQPQQHPARDQHDTF 277
Query: 159 YIKN---------RYVSN------------------------NKPLLRTHTSPMQIR--Y 183
++++ YV K LLRTHT+ R Y
Sbjct: 278 FLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALY 337
Query: 184 SKINK---PPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239
K P+K + RV+R ++ D+TH FHQIEG+ D ++ L GV +R
Sbjct: 338 RLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGV----LRE 393
Query: 240 FFESDNI-QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP 298
FF I Q+RF+P+Y P+TEPS E+ + G K W+E+ +G P++L M L P
Sbjct: 394 FFTKLGITQLRFKPAYNPYTEPSMEV-FSYHQGLKK--WVEVGNSGVFRPEMLLPMGL-P 449
Query: 299 EKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINF 333
E A+G LER TM++YGI+++R +N
Sbjct: 450 ENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNL 484
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 136/295 (46%), Gaps = 62/295 (21%)
Query: 89 TNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS--IG------FDITDG-PEIETDFNN 139
T K+ +T GR + HP+ ER+++ FY +G F + D + T + N
Sbjct: 31 TRKV-LTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQN 89
Query: 140 FTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRV 199
F +L P +HP+R D +Y+ N +LR HTS Q + ++ + G V
Sbjct: 90 FDSLLIPADHPSRKKGDNYYL------NRTHMLRAHTSAHQ--WDLLHAGLDAFLVVGDV 141
Query: 200 YRIDS-DSTHSPMFHQIEGLWI-DKNISFS------------------------------ 227
YR D DS H P+FHQ+E + + K+ F+
Sbjct: 142 YRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQETHTMEAVK 201
Query: 228 ----DLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGA 283
DLK + F D ++IR+ YFPFT PS E++I F G WLE+ G
Sbjct: 202 LVEFDLKQTLTRLMAHLF-GDELEIRWVDCYFPFTHPSFEMEINFH-----GEWLEVLGC 255
Query: 284 GQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338
G + +++ + + IG+AFG GLERL M+ Y I D+RLF+ + FLKQF
Sbjct: 256 GVMEQQLVNSAG--AQDRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFC 308
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 23/165 (13%)
Query: 172 LRTH-TSPMQIRYSKI---NKPPIKVITSGRVYRID--SDSTHSPMFHQIEGLWIDKNIS 225
LR+H TS I S + K P+K+ + R +R + D +H +H + + +++S
Sbjct: 195 LRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVS 254
Query: 226 FSDLKGVYLNFIRVFFESDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLE 279
D K V + F + + +F+P Y P T+ V+ P G W+E
Sbjct: 255 VDDGKVVAEGLLAQFGFT---KFKFKPDEKKSKYYTPETQTE-----VYAYHPKLGEWIE 306
Query: 280 ISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR 324
++ G +P L N+D G G+ERL M+ YG +D+R
Sbjct: 307 VATFGVYSPIALAKYNIDVPV---MNLGLGVERLAMIIYGYEDVR 348
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 81 KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEI 133
++ + +K ID P G HP+M T+ER+ + + +GF+ P I
Sbjct: 31 RETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVI 83
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 190 PIKVITSGRVYRID--SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF-FESDNI 246
PIK+ + R +R + D+T + + +D+ +S D K V +R F FE+
Sbjct: 205 PIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFEN--- 261
Query: 247 QIRFRPS------YFPFTEPSA---EIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297
RFR Y P T+ +V W+EI+ G +P L ++
Sbjct: 262 -FRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDI- 319
Query: 298 PEKYIGFAFGSGLERLTMLRYGIDDLR 324
Y G G+ERL M+ YG DD+R
Sbjct: 320 --PYPVMNLGLGVERLAMILYGYDDVR 344
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 97 PGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFN 138
P G + G HP+ T++R+ + + SIGF P I D +
Sbjct: 37 PRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVH 78
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 190 PIKVITSGRVYRID--SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF-FESDNI 246
PIK+ + R +R + D+T + + +D+ +S D K V +R F FE+
Sbjct: 205 PIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGFEN--- 261
Query: 247 QIRFRPS------YFPFTEPSA---EIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297
RFR Y P T+ +V W+EI+ G +P L ++
Sbjct: 262 -FRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDI- 319
Query: 298 PEKYIGFAFGSGLERLTMLRYGIDDLR 324
Y G G+ERL M+ YG DD+R
Sbjct: 320 --PYPVMNLGLGVERLAMILYGYDDVR 344
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 97 PGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFN 138
P G + G HP+ T++R+ + + SIGF P I D +
Sbjct: 37 PRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVH 78
>pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|B Chain B, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|C Chain C, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
pdb|1T8Q|D Chain D, Structural Genomics, Crystal Structure Of
Glycerophosphoryl Diester Phosphodiesterase From E. Coli
Length = 336
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 96 LPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIET 135
P R + G + I TL+ I+ + ++ GFDI +G +++T
Sbjct: 70 FPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQT 109
>pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
pdb|1YDY|B Chain B, Crystal Structure Of Periplasmic Glycerophosphodiester
Phosphodiesterase From Escherichia Coli
Length = 356
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 96 LPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIET 135
P R + G + I TL+ I+ + ++ GFDI +G +++T
Sbjct: 92 FPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQT 131
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 116 IEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTF--YIKNRYVSNNKPLLR 173
I+++F+ + + TD ++ A + KNH R+ H F N ++SN LL
Sbjct: 282 IDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLV 341
Query: 174 THTSP-MQIRYSKINK--------PPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNI 224
+ P + I Y KI+K P + + SG R++SD + F+ DKN
Sbjct: 342 RFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGET-RLNSDFKEADAFY-------DKNR 393
Query: 225 SFSDLKGVYLNFIRVFF 241
+D K NFI F
Sbjct: 394 KTADSKP---NFISDCF 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,931,069
Number of Sequences: 62578
Number of extensions: 424745
Number of successful extensions: 819
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 22
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)