Query psy9576
Match_columns 338
No_of_seqs 249 out of 1928
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:11:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00488 pheS phenylalanyl-tRN 100.0 1E-104 3E-109 756.2 37.7 328 2-337 3-339 (339)
2 COG0016 PheS Phenylalanyl-tRNA 100.0 8.2E-98 2E-102 706.0 33.6 328 2-336 4-335 (335)
3 PF01409 tRNA-synt_2d: tRNA sy 100.0 6.4E-78 1.4E-82 557.0 22.7 243 91-337 1-247 (247)
4 TIGR00468 pheS phenylalanyl-tR 100.0 7.4E-76 1.6E-80 557.2 32.2 289 38-338 2-293 (294)
5 PLN02853 Probable phenylalanyl 100.0 3.4E-68 7.3E-73 525.2 24.8 240 91-337 205-485 (492)
6 TIGR00469 pheS_mito phenylalan 100.0 2.9E-66 6.2E-71 507.1 22.8 227 98-337 33-349 (460)
7 PTZ00326 phenylalanyl-tRNA syn 100.0 2.2E-64 4.7E-69 500.4 23.9 235 91-332 213-493 (494)
8 PLN02788 phenylalanine-tRNA sy 100.0 7.1E-64 1.5E-68 487.0 24.3 228 94-338 55-299 (402)
9 PRK04172 pheS phenylalanyl-tRN 100.0 1.7E-53 3.6E-58 429.9 24.4 237 91-337 217-488 (489)
10 TIGR00470 sepS O-phosphoseryl- 100.0 1.2E-50 2.5E-55 394.1 18.6 254 61-336 10-359 (533)
11 cd00496 PheRS_alpha_core Pheny 100.0 6.6E-45 1.4E-49 331.9 24.2 215 107-332 1-218 (218)
12 KOG2784|consensus 100.0 5.2E-44 1.1E-48 335.0 11.2 229 94-329 199-466 (483)
13 KOG2783|consensus 100.0 4.3E-39 9.2E-44 304.0 14.8 224 98-338 63-331 (436)
14 TIGR02367 PylS pyrrolysyl-tRNA 100.0 6.3E-35 1.4E-39 284.7 20.8 213 88-327 214-440 (453)
15 PRK09616 pheT phenylalanyl-tRN 100.0 5.4E-32 1.2E-36 277.2 23.0 205 88-314 341-549 (552)
16 PRK06253 O-phosphoseryl-tRNA s 100.0 1.8E-32 3.8E-37 271.5 17.8 247 62-326 11-341 (529)
17 PRK09537 pylS pyrolysyl-tRNA s 100.0 5.2E-31 1.1E-35 257.8 19.7 200 100-326 197-403 (417)
18 PLN02265 probable phenylalanyl 100.0 6.4E-30 1.4E-34 263.6 20.1 207 89-313 380-596 (597)
19 TIGR00471 pheT_arch phenylalan 100.0 1.6E-29 3.6E-34 258.8 21.0 203 88-313 344-550 (551)
20 cd00769 PheRS_beta_core Phenyl 100.0 8.8E-29 1.9E-33 222.4 17.2 181 110-313 3-198 (198)
21 COG2024 Phenylalanyl-tRNA synt 100.0 5.6E-29 1.2E-33 235.0 10.9 251 59-326 8-348 (536)
22 PRK00629 pheT phenylalanyl-tRN 99.9 2.6E-25 5.6E-30 236.4 20.8 203 89-316 469-686 (791)
23 CHL00192 syfB phenylalanyl-tRN 99.9 4.1E-25 8.9E-30 231.8 20.1 199 88-317 380-598 (704)
24 TIGR00472 pheT_bact phenylalan 99.9 8.3E-25 1.8E-29 232.9 20.4 207 89-318 473-696 (798)
25 COG0072 PheT Phenylalanyl-tRNA 99.9 2.7E-25 6E-30 231.0 15.0 202 88-314 331-547 (650)
26 cd00768 class_II_aaRS-like_cor 99.9 9.3E-22 2E-26 175.8 14.3 190 110-313 3-211 (211)
27 KOG2472|consensus 99.8 8.3E-21 1.8E-25 185.3 14.0 200 88-313 374-577 (578)
28 PF02912 Phe_tRNA-synt_N: Amin 99.7 2.1E-18 4.5E-23 130.8 -0.8 73 16-88 1-73 (73)
29 cd00669 Asp_Lys_Asn_RS_core As 99.3 4.8E-11 1E-15 112.3 17.7 115 109-241 4-119 (269)
30 TIGR00462 genX lysyl-tRNA synt 99.2 3.6E-10 7.8E-15 108.2 14.0 115 109-241 4-123 (304)
31 PRK06462 asparagine synthetase 99.2 7.9E-10 1.7E-14 107.2 16.5 118 109-241 33-155 (335)
32 cd00775 LysRS_core Lys_tRNA sy 99.2 1.7E-09 3.7E-14 104.7 17.4 112 110-241 12-126 (329)
33 cd00777 AspRS_core Asp tRNA sy 99.1 2.4E-09 5.2E-14 101.4 17.7 113 109-241 4-119 (280)
34 TIGR00458 aspS_arch aspartyl-t 99.1 2.4E-09 5.1E-14 107.1 18.0 107 109-240 136-249 (428)
35 PRK05159 aspC aspartyl-tRNA sy 99.0 8.4E-09 1.8E-13 103.5 17.6 112 109-241 139-254 (437)
36 cd00776 AsxRS_core Asx tRNA sy 99.0 1.5E-08 3.3E-13 97.8 17.9 109 109-241 27-141 (322)
37 cd00670 Gly_His_Pro_Ser_Thr_tR 99.0 2.3E-08 5E-13 91.4 17.2 198 109-316 5-233 (235)
38 cd00773 HisRS-like_core Class 98.9 2.6E-07 5.7E-12 86.4 20.8 192 109-316 5-259 (261)
39 PRK00037 hisS histidyl-tRNA sy 98.9 1.9E-08 4.2E-13 99.9 11.7 135 102-243 14-153 (412)
40 PTZ00417 lysine-tRNA ligase; P 98.8 2.3E-08 5E-13 103.1 11.2 112 109-240 256-370 (585)
41 PLN02850 aspartate-tRNA ligase 98.8 6.9E-08 1.5E-12 98.9 14.2 90 110-219 229-322 (530)
42 TIGR00442 hisS histidyl-tRNA s 98.8 6.8E-08 1.5E-12 95.6 13.4 134 103-243 11-152 (397)
43 PTZ00401 aspartyl-tRNA synthet 98.8 3.1E-08 6.8E-13 101.6 11.0 110 109-238 216-328 (550)
44 PLN02603 asparaginyl-tRNA synt 98.7 3.4E-07 7.4E-12 94.1 16.2 113 110-236 230-367 (565)
45 PRK12445 lysyl-tRNA synthetase 98.7 9.3E-08 2E-12 97.4 11.5 112 110-240 188-301 (505)
46 COG1190 LysU Lysyl-tRNA synthe 98.7 1.9E-08 4.2E-13 100.1 5.9 122 109-250 183-309 (502)
47 TIGR00499 lysS_bact lysyl-tRNA 98.7 6E-08 1.3E-12 98.7 9.5 112 109-240 175-289 (496)
48 PRK09350 poxB regulator PoxA; 98.7 6.6E-08 1.4E-12 92.8 9.0 121 109-242 8-129 (306)
49 PRK00484 lysS lysyl-tRNA synth 98.6 2.1E-07 4.7E-12 94.6 11.9 112 109-240 175-289 (491)
50 PLN02502 lysyl-tRNA synthetase 98.6 1.1E-07 2.4E-12 97.6 9.8 114 110-241 233-347 (553)
51 PLN02532 asparagine-tRNA synth 98.6 8.1E-07 1.8E-11 92.0 16.0 45 191-237 390-436 (633)
52 PTZ00385 lysyl-tRNA synthetase 98.6 1.7E-07 3.8E-12 97.3 11.1 114 109-240 236-350 (659)
53 PF00152 tRNA-synt_2: tRNA syn 98.6 3.9E-07 8.5E-12 88.3 12.1 115 109-241 25-144 (335)
54 COG2269 Truncated, possibly in 98.5 2.7E-07 5.9E-12 85.9 8.3 103 107-222 17-122 (322)
55 PF00587 tRNA-synt_2b: tRNA sy 98.5 1.7E-06 3.6E-11 75.9 12.7 132 110-251 3-149 (173)
56 PTZ00425 asparagine-tRNA ligas 98.5 8.4E-06 1.8E-10 84.1 18.9 46 191-238 344-391 (586)
57 PLN02678 seryl-tRNA synthetase 98.5 3.7E-05 8E-10 77.3 23.0 177 110-296 178-372 (448)
58 KOG1885|consensus 98.5 7.1E-08 1.5E-12 94.7 2.5 156 109-297 228-388 (560)
59 PRK02983 lysS lysyl-tRNA synth 98.4 5.3E-07 1.1E-11 99.3 8.9 113 110-240 774-887 (1094)
60 cd00779 ProRS_core_prok Prolyl 98.4 7.2E-06 1.6E-10 76.7 14.6 194 108-314 33-249 (255)
61 CHL00201 syh histidine-tRNA sy 98.4 6.3E-06 1.4E-10 82.7 14.4 129 108-243 20-157 (430)
62 TIGR00459 aspS_bact aspartyl-t 98.4 3.6E-06 7.8E-11 87.0 12.1 113 109-241 141-256 (583)
63 TIGR00414 serS seryl-tRNA synt 98.4 0.00025 5.4E-09 71.0 24.9 192 110-314 177-394 (418)
64 PRK03932 asnC asparaginyl-tRNA 98.3 3.6E-06 7.7E-11 84.9 10.6 112 109-240 136-257 (450)
65 cd00770 SerRS_core Seryl-tRNA 98.3 1.3E-05 2.8E-10 76.7 13.8 194 109-315 55-274 (297)
66 PF13393 tRNA-synt_His: Histid 98.3 2.3E-05 5.1E-10 74.8 14.8 124 109-243 13-144 (311)
67 PRK12421 ATP phosphoribosyltra 98.2 2.3E-05 4.9E-10 77.8 14.3 128 107-243 22-156 (392)
68 PRK00476 aspS aspartyl-tRNA sy 98.2 1E-05 2.2E-10 84.0 12.2 113 109-241 144-259 (588)
69 TIGR00457 asnS asparaginyl-tRN 98.2 6.2E-06 1.3E-10 83.2 10.2 117 109-240 139-260 (453)
70 COG0124 HisS Histidyl-tRNA syn 98.2 2.1E-05 4.6E-10 78.5 13.7 130 106-243 18-156 (429)
71 TIGR00443 hisZ_biosyn_reg ATP 98.2 2.3E-05 4.9E-10 75.4 13.0 126 108-243 10-142 (314)
72 PRK12820 bifunctional aspartyl 98.2 1.1E-05 2.3E-10 84.9 11.3 135 84-241 137-274 (706)
73 PRK05431 seryl-tRNA synthetase 98.2 0.00033 7.2E-09 70.3 21.3 173 111-296 175-365 (425)
74 PLN02903 aminoacyl-tRNA ligase 98.2 1.3E-05 2.9E-10 83.5 11.6 135 84-241 184-322 (652)
75 PLN02972 Histidyl-tRNA synthet 98.2 3.7E-05 8E-10 81.3 14.6 126 108-243 343-473 (763)
76 PRK12292 hisZ ATP phosphoribos 98.2 3E-05 6.4E-10 76.9 13.1 127 109-243 20-153 (391)
77 PRK12444 threonyl-tRNA synthet 98.1 3.5E-05 7.6E-10 81.1 14.2 127 108-243 276-416 (639)
78 KOG0556|consensus 98.1 1.5E-06 3.3E-11 84.3 2.3 107 82-212 207-318 (533)
79 PRK12295 hisZ ATP phosphoribos 98.1 7.8E-05 1.7E-09 73.5 14.4 125 108-243 6-135 (373)
80 cd00771 ThrRS_core Threonyl-tR 98.1 7E-05 1.5E-09 71.6 13.4 128 107-243 31-172 (298)
81 PLN02530 histidine-tRNA ligase 98.1 3.2E-05 7E-10 78.8 11.7 126 109-243 87-219 (487)
82 PRK12420 histidyl-tRNA synthet 98.0 9.1E-05 2E-09 74.1 13.7 130 107-243 19-154 (423)
83 PRK12293 hisZ ATP phosphoribos 98.0 5.6E-05 1.2E-09 71.7 11.5 117 108-243 21-141 (281)
84 PRK09194 prolyl-tRNA synthetas 98.0 0.00025 5.4E-09 73.6 16.8 129 107-243 48-190 (565)
85 PRK00413 thrS threonyl-tRNA sy 98.0 6.6E-05 1.4E-09 78.9 12.6 129 107-243 271-413 (638)
86 PLN02320 seryl-tRNA synthetase 98.0 0.0009 2E-08 68.1 20.1 173 110-296 237-428 (502)
87 PRK12305 thrS threonyl-tRNA sy 97.9 6.9E-05 1.5E-09 77.9 11.4 130 106-243 206-349 (575)
88 TIGR00418 thrS threonyl-tRNA s 97.9 0.00011 2.3E-09 76.3 12.6 129 107-243 201-343 (563)
89 TIGR00409 proS_fam_II prolyl-t 97.9 0.00052 1.1E-08 71.3 17.6 129 107-243 48-190 (568)
90 PLN02221 asparaginyl-tRNA synt 97.9 9.5E-05 2E-09 76.4 11.6 46 191-238 327-374 (572)
91 cd00772 ProRS_core Prolyl-tRNA 97.9 0.00084 1.8E-08 63.2 16.9 132 106-242 32-179 (264)
92 TIGR00408 proS_fam_I prolyl-tR 97.8 0.00028 6E-09 71.8 13.3 201 107-317 39-264 (472)
93 cd00778 ProRS_core_arch_euk Pr 97.8 0.00037 7.9E-09 65.4 12.1 182 106-296 32-231 (261)
94 cd00774 GlyRS-like_core Glycyl 97.7 0.00014 3.1E-09 67.9 8.4 119 107-243 33-167 (254)
95 PRK08661 prolyl-tRNA synthetas 97.6 0.0017 3.6E-08 66.2 15.8 180 107-296 45-242 (477)
96 PRK14799 thrS threonyl-tRNA sy 97.5 0.00068 1.5E-08 70.0 10.9 127 108-243 170-310 (545)
97 COG0017 AsnS Aspartyl/asparagi 97.4 0.00059 1.3E-08 67.9 9.0 111 109-241 137-250 (435)
98 PLN02908 threonyl-tRNA synthet 97.4 0.00098 2.1E-08 70.8 10.9 128 107-243 322-463 (686)
99 COG0173 AspS Aspartyl-tRNA syn 97.2 0.0041 9E-08 63.2 12.1 108 110-242 145-260 (585)
100 PRK12325 prolyl-tRNA synthetas 97.2 0.0032 7E-08 63.5 11.3 130 106-243 47-190 (439)
101 PLN02837 threonine-tRNA ligase 97.2 0.0091 2E-07 62.7 14.6 127 109-243 250-390 (614)
102 PRK00960 seryl-tRNA synthetase 97.1 0.019 4.1E-07 58.9 16.1 147 170-322 310-493 (517)
103 PRK12294 hisZ ATP phosphoribos 97.1 0.0056 1.2E-07 57.9 11.3 108 108-229 9-119 (272)
104 KOG1936|consensus 96.8 0.016 3.5E-07 57.3 11.8 144 90-243 56-208 (518)
105 TIGR00415 serS_MJ seryl-tRNA s 96.7 0.17 3.7E-06 51.7 18.6 195 110-315 223-483 (520)
106 PRK04173 glycyl-tRNA synthetas 96.7 0.019 4.1E-07 58.3 11.8 85 167-252 157-255 (456)
107 KOG0554|consensus 96.5 0.0059 1.3E-07 59.7 6.7 94 111-219 137-236 (446)
108 PRK03991 threonyl-tRNA synthet 96.5 0.049 1.1E-06 57.2 13.8 107 108-222 229-346 (613)
109 COG0442 ProS Prolyl-tRNA synth 95.0 0.76 1.7E-05 47.1 14.8 175 106-297 47-240 (500)
110 COG3705 HisZ ATP phosphoribosy 94.4 0.082 1.8E-06 52.4 6.1 109 107-223 18-129 (390)
111 KOG2411|consensus 94.0 0.24 5.3E-06 50.0 8.3 131 86-242 161-298 (628)
112 COG0172 SerS Seryl-tRNA synthe 92.9 0.67 1.5E-05 46.5 9.5 125 109-243 173-317 (429)
113 PRK07080 hypothetical protein; 92.4 3.4 7.4E-05 39.8 13.2 149 104-258 41-222 (317)
114 PF00152 tRNA-synt_2: tRNA syn 91.9 0.13 2.8E-06 49.9 3.0 25 302-326 303-327 (335)
115 PLN02903 aminoacyl-tRNA ligase 91.7 0.15 3.2E-06 53.8 3.4 24 304-327 593-616 (652)
116 COG0441 ThrS Threonyl-tRNA syn 91.6 0.56 1.2E-05 49.0 7.5 89 107-203 221-314 (589)
117 KOG1035|consensus 90.6 5.7 0.00012 44.7 14.1 196 33-242 842-1057(1351)
118 PRK14894 glycyl-tRNA synthetas 90.1 1.7 3.7E-05 44.6 9.1 113 169-284 138-266 (539)
119 PRK09350 poxB regulator PoxA; 89.5 0.22 4.9E-06 47.8 2.2 24 302-325 282-305 (306)
120 PRK03932 asnC asparaginyl-tRNA 89.2 0.21 4.5E-06 50.7 1.8 25 302-326 414-438 (450)
121 TIGR00457 asnS asparaginyl-tRN 87.9 0.29 6.2E-06 49.7 1.9 25 302-326 417-441 (453)
122 PRK12445 lysyl-tRNA synthetase 87.9 0.33 7.1E-06 50.0 2.4 25 302-326 471-495 (505)
123 PLN02502 lysyl-tRNA synthetase 87.6 0.34 7.3E-06 50.4 2.2 30 293-326 514-543 (553)
124 TIGR00499 lysS_bact lysyl-tRNA 87.5 0.35 7.6E-06 49.6 2.3 25 302-326 462-486 (496)
125 PRK00484 lysS lysyl-tRNA synth 87.5 0.34 7.4E-06 49.7 2.2 25 302-326 457-481 (491)
126 PLN02221 asparaginyl-tRNA synt 87.4 0.38 8.3E-06 50.1 2.5 25 302-326 536-560 (572)
127 PRK00476 aspS aspartyl-tRNA sy 87.1 0.57 1.2E-05 49.1 3.6 25 302-326 528-552 (588)
128 PTZ00417 lysine-tRNA ligase; P 86.1 0.45 9.8E-06 49.7 2.2 25 302-326 551-575 (585)
129 COG0173 AspS Aspartyl-tRNA syn 85.2 1.2 2.6E-05 45.9 4.6 25 301-327 527-551 (585)
130 PLN02734 glycyl-tRNA synthetas 85.1 2.4 5.2E-05 45.1 6.9 50 168-217 247-306 (684)
131 TIGR00389 glyS_dimeric glycyl- 84.5 1.9 4.1E-05 44.9 5.8 51 167-217 154-214 (551)
132 PTZ00385 lysyl-tRNA synthetase 83.6 0.61 1.3E-05 49.3 1.8 25 302-326 532-556 (659)
133 PRK12820 bifunctional aspartyl 82.7 1.1 2.4E-05 47.8 3.4 24 304-327 546-569 (706)
134 COG0017 AsnS Aspartyl/asparagi 81.0 0.85 1.8E-05 45.8 1.6 25 302-326 399-423 (435)
135 KOG1885|consensus 79.7 0.73 1.6E-05 46.4 0.7 38 285-326 509-548 (560)
136 COG1190 LysU Lysyl-tRNA synthe 79.6 0.82 1.8E-05 46.5 1.0 38 285-326 453-492 (502)
137 COG0423 GRS1 Glycyl-tRNA synth 78.8 4.3 9.3E-05 41.7 5.8 51 167-217 158-218 (558)
138 KOG0555|consensus 78.7 3.3 7.2E-05 41.1 4.8 107 110-237 247-355 (545)
139 TIGR00459 aspS_bact aspartyl-t 65.0 3.8 8.2E-05 43.0 1.9 25 302-326 523-547 (583)
140 KOG2509|consensus 64.9 43 0.00093 33.8 9.0 126 110-243 189-330 (455)
141 PF14860 DrrA_P4M: DrrA phosph 60.0 9.3 0.0002 31.3 2.9 58 5-66 48-114 (120)
142 PRK02983 lysS lysyl-tRNA synth 55.9 7.2 0.00016 44.0 2.2 24 302-326 1061-1084(1094)
143 KOG1637|consensus 48.0 38 0.00082 34.6 5.5 123 104-236 190-325 (560)
144 PF14357 DUF4404: Domain of un 45.0 68 0.0015 24.8 5.5 19 107-125 66-85 (85)
145 TIGR03042 PS_II_psbQ_bact phot 43.8 53 0.0012 28.1 5.1 59 15-73 55-114 (142)
146 PF08006 DUF1700: Protein of u 42.0 26 0.00056 30.7 3.1 37 34-73 3-39 (181)
147 COG0124 HisS Histidyl-tRNA syn 40.7 72 0.0016 32.3 6.3 64 247-318 257-324 (429)
148 PF03938 OmpH: Outer membrane 40.5 2.2E+02 0.0048 23.9 9.6 64 47-130 72-136 (158)
149 CHL00201 syh histidine-tRNA sy 40.1 91 0.002 31.3 7.1 64 247-318 249-316 (430)
150 cd00733 GlyRS_alpha_core Class 39.6 1.6E+02 0.0034 27.8 7.8 168 110-330 3-180 (279)
151 PF08359 TetR_C_4: YsiA-like p 39.0 1.8E+02 0.0039 23.4 7.6 71 2-72 3-78 (133)
152 PRK12292 hisZ ATP phosphoribos 35.9 1.2E+02 0.0026 30.0 7.1 78 225-316 238-319 (391)
153 PRK09348 glyQ glycyl-tRNA synt 34.4 2E+02 0.0043 27.2 7.6 167 109-328 6-182 (283)
154 cd00645 AsnA Asparagine synthe 34.1 19 0.00041 34.5 1.0 24 302-325 272-295 (309)
155 PF11101 DUF2884: Protein of u 33.8 2.3E+02 0.0049 26.0 8.0 59 22-82 139-198 (229)
156 TIGR00388 glyQ glycyl-tRNA syn 33.7 2.3E+02 0.0049 26.9 7.9 168 109-329 3-180 (293)
157 KOG2324|consensus 32.7 32 0.0007 34.0 2.3 129 107-243 53-196 (457)
158 COG0752 GlyQ Glycyl-tRNA synth 32.6 2.4E+02 0.0052 26.5 7.7 105 207-329 73-184 (298)
159 PF13393 tRNA-synt_His: Histid 32.3 1.5E+02 0.0033 27.9 6.9 58 246-313 251-311 (311)
160 PF07851 TMPIT: TMPIT-like pro 31.8 1.3E+02 0.0028 29.4 6.2 112 6-121 15-135 (330)
161 TIGR00669 asnA aspartate--ammo 30.7 24 0.00053 34.1 1.1 25 302-326 289-313 (330)
162 PRK11546 zraP zinc resistance 30.5 2.2E+02 0.0048 24.3 6.8 22 22-43 61-82 (143)
163 PF11015 DUF2853: Protein of u 29.7 42 0.00091 27.0 2.1 21 15-35 37-57 (102)
164 PRK05425 asparagine synthetase 29.6 25 0.00054 34.0 1.0 25 302-326 282-306 (327)
165 PTZ00213 asparagine synthetase 29.3 27 0.00058 34.0 1.2 25 302-326 308-332 (348)
166 PRK00037 hisS histidyl-tRNA sy 29.1 1.8E+02 0.0038 28.7 7.0 72 233-317 235-311 (412)
167 PRK12421 ATP phosphoribosyltra 28.2 2.2E+02 0.0048 28.3 7.5 78 226-317 246-327 (392)
168 KOG2411|consensus 27.4 50 0.0011 34.0 2.7 25 301-327 568-592 (628)
169 PF02091 tRNA-synt_2e: Glycyl- 27.4 31 0.00068 32.5 1.2 166 110-330 2-180 (284)
170 PRK00260 cysS cysteinyl-tRNA s 26.0 5.8E+02 0.013 25.9 10.2 23 110-132 434-456 (463)
171 PF11324 DUF3126: Protein of u 26.0 1.5E+02 0.0032 21.8 4.3 31 232-266 4-34 (63)
172 TIGR00443 hisZ_biosyn_reg ATP 25.7 3E+02 0.0065 26.2 7.7 78 226-317 231-312 (314)
173 PF05816 TelA: Toxic anion res 25.4 1.7E+02 0.0038 28.3 6.0 65 10-75 23-94 (333)
174 PRK13414 flagellar biosynthesi 25.1 1.2E+02 0.0026 26.7 4.2 63 17-79 139-207 (209)
175 COG1107 Archaea-specific RecJ- 23.9 77 0.0017 33.3 3.3 78 16-94 535-612 (715)
176 PRK14908 glycyl-tRNA synthetas 23.4 2.7E+02 0.006 31.3 7.6 167 109-328 7-184 (1000)
177 PLN02900 alanyl-tRNA synthetas 21.7 5.2E+02 0.011 29.0 9.4 28 109-136 13-40 (936)
178 PF07564 DUF1542: Domain of Un 21.2 1.5E+02 0.0032 21.6 3.6 31 2-32 22-52 (70)
179 PLN02972 Histidyl-tRNA synthet 20.7 4.8E+02 0.01 28.6 8.6 62 247-317 588-653 (763)
180 PF14492 EFG_II: Elongation Fa 20.3 82 0.0018 23.4 2.1 19 274-292 42-60 (75)
No 1
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=100.00 E-value=1.4e-104 Score=756.17 Aligned_cols=328 Identities=54% Similarity=0.954 Sum_probs=317.7
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHh
Q psy9576 2 NELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKK 81 (338)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~ 81 (338)
++++++.+++.++|++++|+++|+++|++||||||.||.++++|+++|+||||++|+.+|++|+.+++++++++++|+.+
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~l~~~r~~~lgkkg~l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~ 82 (339)
T PRK00488 3 EDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLGKLPPEERKEAGALINELKQAIEAALEERKEELEAA 82 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec
Q psy9576 82 QLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK 161 (338)
Q Consensus 82 ~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~ 161 (338)
++++++++|.+|+|+|++....|+.||++++.++||++|.+|||+|+.+|+++++++||++||+|++||||+++|||||+
T Consensus 83 ~~~~~l~~e~~d~t~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~ 162 (339)
T PRK00488 83 ALNARLAAETIDVTLPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID 162 (339)
T ss_pred HHHHhhhhccccccCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 162 NRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 162 np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+. .+|||||||+|+++|+++.+|+|+|++|+|||+|. |+||+|+|||++|++++++++|+|||++|+.|++++
T Consensus 163 ~~------~lLRThTSp~qir~L~~~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~ 236 (339)
T PRK00488 163 DG------LLLRTHTSPVQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAF 236 (339)
T ss_pred CC------ceeeccCcHHHHHHHHhcCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 54 89999999999999998889999999999999995 999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEccCCCCCCCCceEEEEEee--cC------CCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhH
Q psy9576 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQ--DG------PLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLER 312 (338)
Q Consensus 241 fg~~~~~~r~~ps~fpf~~Ps~e~~i~~~--~g------~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgler 312 (338)
||. +.++||||+|||||+||+|+||.|. +| | ++||+||||||||||+||+++||||++|+||||||||||
T Consensus 237 fg~-~~~~R~rpsyFPFTePS~Evdv~~~~~~g~gc~~ck-~~~WiEilG~Gmv~p~vl~~~gid~~~~~G~AfG~GleR 314 (339)
T PRK00488 237 FGE-DVKIRFRPSYFPFTEPSAEVDVSCFKCGGKGCRVCK-GTGWLEILGCGMVHPNVLRNVGIDPEEYSGFAFGMGIER 314 (339)
T ss_pred cCC-CCeEEecCCCCCCCCCceEEEEEEeccCCCcccccC-CCCceEEeccCccCHHHHHHcCCCcccceEEEEeecHHH
Confidence 995 7899999999999999999999986 22 3 478999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccccccCChhhhccC
Q psy9576 313 LTMLRYGIDDLRLFYKGNINFLKQF 337 (338)
Q Consensus 313 lam~~~~i~diR~~~~~d~rfl~qf 337 (338)
|||++|||+|||+||+||+|||+||
T Consensus 315 laMl~ygi~DiR~~~~~D~rfl~qF 339 (339)
T PRK00488 315 LAMLKYGIDDIRLFYENDLRFLKQF 339 (339)
T ss_pred HHHHHhCCcHHHHHHhcCHhHHhcC
Confidence 9999999999999999999999998
No 2
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-98 Score=705.98 Aligned_cols=328 Identities=51% Similarity=0.865 Sum_probs=313.3
Q ss_pred hHHHHHHHHHHHHHhcCCCH-HHHHHHHHHhcCCcchHHHHHHHhcCCCh-hHhhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy9576 2 NELKKLLIQAKIDFSTAVSI-SSLENAKSYYLGKNGKLTQYIKNIKNISI-NERKRYGEIINSIKINIKKELNIHRDILK 79 (338)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~-~~l~~~~~~~lGkkg~l~~l~~~l~~l~~-eer~~~G~~~n~~k~~~~~~~~~~~~~l~ 79 (338)
..++.+.+++..+|+.++|. ++|+++|++||||||.|+.++++++++++ |||+.+|+.+|.+|+++++++.+++..|.
T Consensus 4 ~~l~~l~~~~~~~i~~~~~~~~~L~~~~~~~lgk~g~l~~~~k~l~~~~~~eer~~~g~~in~~~~~~~~~~~~~~~~l~ 83 (335)
T COG0016 4 IALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELE 83 (335)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCcccchHHHHHHhccCChhhhhhhhhhhHHhhHHHHHHHHHHHHHHHH
Confidence 35889999999999999995 99999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcccee
Q psy9576 80 KKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFY 159 (338)
Q Consensus 80 ~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~ 159 (338)
.....++++.+.+|+++|+.....|+.||+++++++|+++|.+|||+|+.+|++++++||||+||+|.+||||+||||||
T Consensus 84 ~~~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy 163 (335)
T COG0016 84 AAGLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFY 163 (335)
T ss_pred HHHHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccCCCcceEeccchHHHHHHHhcCCC-CceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 160 IKNRYVSNNKPLLRTHTSPMQIRYSKINKP-PIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 160 i~np~~~~~~~~LRt~lsp~~l~~l~~~~~-pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
+++. .+..+|||||||+|+|+|.++.+ |+|+|++|+|||+| .|+||+|+|||++|+++|+++||.||||+|+.|+
T Consensus 164 ~~~~---~~~~lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~ 240 (335)
T COG0016 164 LKDD---REKLLLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFA 240 (335)
T ss_pred EcCC---CCceeecccCcHhhHHHHHhCCCCCceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHH
Confidence 9875 22569999999999999998765 99999999999999 6999999999999999999999999999999999
Q ss_pred HHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 238 RVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 238 ~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
+++||. +.++||||||||||+||+|+||+|. + .+||+||||||||||+||+++||+|++|.|||||||+|||||++
T Consensus 241 ~~~fg~-~~~vRfrpsyFPFTEPS~Evdv~~~-~--~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAMLk 316 (335)
T COG0016 241 KKFFGE-DVKVRFRPSYFPFTEPSAEVDVYCP-G--CGGWLEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAMLK 316 (335)
T ss_pred HHhcCC-CcceEeecCCCCCCCCeEEEEEEEc-C--CCCEEEEecccccCHHHHHhcCCCCCcceEEEEeecHHHHHHHH
Confidence 999885 5589999999999999999999992 1 15799999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhcc
Q psy9576 318 YGIDDLRLFYKGNINFLKQ 336 (338)
Q Consensus 318 ~~i~diR~~~~~d~rfl~q 336 (338)
|||+|||+||+||+|||+|
T Consensus 317 ygI~DIR~l~~~D~rfl~q 335 (335)
T COG0016 317 YGIPDIRDLYENDLRFLRQ 335 (335)
T ss_pred hCCcHHHHHHhccchhhcC
Confidence 9999999999999999998
No 3
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=100.00 E-value=6.4e-78 Score=556.99 Aligned_cols=243 Identities=54% Similarity=0.985 Sum_probs=223.5
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CC
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NN 168 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~ 168 (338)
++|+|+|+...+.|+.||++++.++|+++|.++||+|+++++++++++|||+||+|++||||+++||||+.+|. + ++
T Consensus 1 ~~d~~~p~~~~~~G~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~-~~~~~ 79 (247)
T PF01409_consen 1 KIDVTLPGKRFTPGRLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPY-SAEED 79 (247)
T ss_dssp ---TTSGCTTCCCSBTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSS-BCECS
T ss_pred CccccCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccc-cccch
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999995 6 79
Q ss_pred cceEeccchHHHHHHH-hcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCe
Q psy9576 169 KPLLRTHTSPMQIRYS-KINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNI 246 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l-~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~ 246 (338)
+++|||||+|+++++| .++.+|+|+|++|+|||+|. |+||+|+|||++|++++++++|.+|||+|+.|++++||. +.
T Consensus 80 ~~vLRThts~~~~~~l~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~-~~ 158 (247)
T PF01409_consen 80 YSVLRTHTSPGQLRTLNKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI-DV 158 (247)
T ss_dssp SEEE-SSTHHHHHHHHTTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT-TE
T ss_pred hhhhhhhhhHHHHHHHHHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc-cc
Confidence 9999999999999999 44578999999999999995 999999999999999999999999999999999999996 56
Q ss_pred eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 247 QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 247 ~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
++||+|+|||||+||+|++|+|..++ +.+|+||||||||||+||+++||| ++++|+|||||||||||++|||+|||+|
T Consensus 159 ~~r~~ps~fPftePs~e~~i~~~~~~-~~~wiEvgg~G~vhP~Vl~~~gid-~~~~~~A~G~GleRlam~~~gi~diR~~ 236 (247)
T PF01409_consen 159 KVRFRPSYFPFTEPSREADIYCGVCK-GGGWIEVGGCGMVHPEVLENWGID-EEYPGFAFGLGLERLAMLKYGIPDIRLL 236 (247)
T ss_dssp EEEEEECEETTEEEEEEEEEEEECTT-TTCEEEEEEEEEE-HHHHHHTT---TTSEEEEEEEEHHHHHHHHHT-SSGGHH
T ss_pred ceEeecCCCCcccCCeEEEEEEeecc-CCCceEEeecccccHhhhhccCcC-ccceEEEecCCHHHHHHHHcCCchHHHH
Confidence 89999999999999999999974234 568999999999999999999998 7799999999999999999999999999
Q ss_pred ccCChhhhccC
Q psy9576 327 YKGNINFLKQF 337 (338)
Q Consensus 327 ~~~d~rfl~qf 337 (338)
|+||+|||+||
T Consensus 237 ~~~d~~fl~qf 247 (247)
T PF01409_consen 237 YSNDLRFLRQF 247 (247)
T ss_dssp HTTTHHHHGGG
T ss_pred hcCcHhHHhcC
Confidence 99999999998
No 4
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=100.00 E-value=7.4e-76 Score=557.19 Aligned_cols=289 Identities=50% Similarity=0.905 Sum_probs=272.3
Q ss_pred HHHHHHHhcCCChhH-hhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy9576 38 LTQYIKNIKNISINE-RKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116 (338)
Q Consensus 38 l~~l~~~l~~l~~ee-r~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~I 116 (338)
++.++++|+++++|| |+++|+.+|++|+++++++++++.++..++..+++..+.+|+|+|+.....|..||.+++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~tlp~~~~~~g~~~p~~~~~~~i 81 (294)
T TIGR00468 2 LKDLLKQLGKLTKEETKPALGALINEVKIELEDELTKLKPELEKAGLWSKLKFETYDVTLPGTKIYPGSLHPLTRVIDEI 81 (294)
T ss_pred hHHHHHHhcCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCCcCHHHHHHHHH
Confidence 789999999999999 9999999999999999999999999999998999999999999999777889999999999999
Q ss_pred HHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC-CCceEEE
Q psy9576 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK-PPIKVIT 195 (338)
Q Consensus 117 r~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~-~pirife 195 (338)
|++|+++||+|+.+|+++++++||++||+|++||+|+++|+|++.+. ++|||||+|+++++|+++. +|+|+||
T Consensus 82 r~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~------~vLRtsl~p~ll~~l~~N~~~pirlFE 155 (294)
T TIGR00468 82 RDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDR------LLLRTHTTAVQLRTMEENEKPPIRIFS 155 (294)
T ss_pred HHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCC------cceecccHHHHHHHHHhcCCCCceEEE
Confidence 99999999999999999999899999999999999999999998733 8999999999999998876 9999999
Q ss_pred eeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCC
Q psy9576 196 SGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLK 274 (338)
Q Consensus 196 iG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~ 274 (338)
+|+|||+|. |++|.|+|||++|++++++++|+||||+|+.|++.+ |. ..+++|+|+++||+|||++++|.|.+|
T Consensus 156 iGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l-~~-~~~~~~~~~~~p~~~Ps~e~~i~~~~g--- 230 (294)
T TIGR00468 156 PGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM-FG-ETEIRFRPSYFPFTEPSAEIDVYCWEG--- 230 (294)
T ss_pred ecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh-CC-CcceeeccCCCCCCCCCEEEEEEEeCC---
Confidence 999999995 889999999999999999999999999999999999 53 346899999999999999999988322
Q ss_pred CCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 275 GNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 275 ~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
.||+|||+||||||+|++++||+++ |+|+|||||+|||||++|||+|||+||+||+|||+||+
T Consensus 231 ~~w~eiG~~G~vhP~Vl~~~gi~~~-~~v~afel~lerl~m~~~~i~dir~~~~~d~~~l~~~~ 293 (294)
T TIGR00468 231 KTWLEVLGAGMFRPEVLEPMGIDPT-YPGFAWGIGIERLAMLKYGIDDIRDLYENDLRFLRQFK 293 (294)
T ss_pred CccEEEEEeccCcHHHHHHCCCCCC-CeEEEEEeeHHHHHHHHhCCcHHHHHHcCChHHHhhcC
Confidence 2799999999999999999999976 89999999999999999999999999999999999995
No 5
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=100.00 E-value=3.4e-68 Score=525.16 Aligned_cols=240 Identities=36% Similarity=0.639 Sum_probs=219.6
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEe-eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC---
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDIT-DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--- 166 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev-~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--- 166 (338)
.+|+..|+.....|+.||+++++++||++|.+|||+|+ .++.++++++|||+||+|++||||++||||||++|...
T Consensus 205 ~Yn~~a~g~~~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~ 284 (492)
T PLN02853 205 EYNFNALGAPPEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQL 284 (492)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccC
Confidence 46788888889999999999999999999999999999 79999999999999999999999999999999865211
Q ss_pred ------------------------------CCcceEeccchHHHHHHHhc--C--CCCceEEEeeeEEEeCC-CCCCCcc
Q psy9576 167 ------------------------------NNKPLLRTHTSPMQIRYSKI--N--KPPIKVITSGRVYRIDS-DSTHSPM 211 (338)
Q Consensus 167 ------------------------------~~~~~LRt~lsp~~l~~l~~--~--~~pirifeiG~Vyr~d~-d~th~~~ 211 (338)
....+||||||++++++|.. + .+|+|+|++|+|||+|. |+||+|+
T Consensus 285 p~~~~erVk~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~e 364 (492)
T PLN02853 285 PEDYVERVKTVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAE 364 (492)
T ss_pred cHHHHHHHHHHHhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCcc
Confidence 14689999999999999974 2 47999999999999995 9999999
Q ss_pred eeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh
Q psy9576 212 FHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291 (338)
Q Consensus 212 f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl 291 (338)
|||++|+++|++++|.+|+|++..|++.+ |. .++||+|+|||||+||+|+++++ .. .++|+|||||||+||+||
T Consensus 365 FhQ~EG~vvd~~~t~~~L~g~l~~f~~~l-g~--~~~RfrP~yfPfTEPS~Ei~v~~--~~-~gkWiEi~g~Gm~rpevl 438 (492)
T PLN02853 365 FHQVEGLVCDRGLTLGDLIGVLEDFFSRL-GM--TKLRFKPAYNPYTEPSMEIFSYH--EG-LKKWVEVGNSGMFRPEML 438 (492)
T ss_pred ceeEEEEEEeCCCCHHHHHHHHHHHHHHc-CC--ceEEEecCCCCCCCCeEEEEEEe--cC-CCCEEEEecCcCcCHHHH
Confidence 99999999999999999999999999998 94 88999999999999999999954 11 234999999999999999
Q ss_pred hhCCCCCCCeEEEEEeechhHHHHHHcCCCccccccc--CChhhhccC
Q psy9576 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYK--GNINFLKQF 337 (338)
Q Consensus 292 ~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~--~d~rfl~qf 337 (338)
+++|| |+.|+|+||||||||+||++|||+|||+||+ +|+.||+..
T Consensus 439 ~~~Gi-~~~~~~~A~GlGleRlaMl~ygi~DIR~l~~~k~Dl~~lr~~ 485 (492)
T PLN02853 439 LPMGL-PEDVNVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKRN 485 (492)
T ss_pred HhCCC-CCcceEEEEEecHHHHHHHHhCCcHHHHHhCCCCCHHHHhhC
Confidence 99999 5779999999999999999999999999999 689999753
No 6
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=100.00 E-value=2.9e-66 Score=507.14 Aligned_cols=227 Identities=40% Similarity=0.679 Sum_probs=211.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhC--------CCeEeeC--CccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 98 GRGKNKGGLHPIMRTLERIEKIFYSI--------GFDITDG--PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 98 ~~~~~~G~~hp~~~~~~~Ir~~~~~~--------GF~Ev~~--~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
++....|..||++.+.++|.++|.++ ||+++.+ | ++++++|||+||+|++||+|+++|||||++.
T Consensus 33 ~r~~~~~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~P-vvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~~~---- 107 (460)
T TIGR00469 33 DANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKP-VVTTMENFDNLGFPADHPGRQKSDCYYINEQ---- 107 (460)
T ss_pred ccCccCCCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCC-ccchhhhhhhcCCCCCCcccCcccceEecCC----
Confidence 45778899999999999999999999 9999988 8 8899999999999999999999999999766
Q ss_pred CcceEeccchHHHHHHHhcCC---CCce--EEEeeeEEEeCC-CCCCCcceeEEEEEEEcC-------------------
Q psy9576 168 NKPLLRTHTSPMQIRYSKINK---PPIK--VITSGRVYRIDS-DSTHSPMFHQIEGLWIDK------------------- 222 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~~---~pir--ifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~------------------- 222 (338)
.+||||||++|+++|+++. +|++ ++.+|+|||+|. |+||+|+|||+||+++++
T Consensus 108 --~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~~~~~~~~~~~~~~~~~~~~ 185 (460)
T TIGR00469 108 --HLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRKRTKADLFEKEPGYIEKFEE 185 (460)
T ss_pred --ceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEeccccccccccccchhhhhhh
Confidence 7999999999999998643 7888 999999999995 999999999999999986
Q ss_pred ------------C--CC-----------------H---------HHHHHHHHHHHHHhccCCCe---------------e
Q psy9576 223 ------------N--IS-----------------F---------SDLKGVYLNFIRVFFESDNI---------------Q 247 (338)
Q Consensus 223 ------------~--~~-----------------f---------~dLKg~l~~ll~~lfg~~~~---------------~ 247 (338)
+ ++ | .|||++|+.|++.+||. .. +
T Consensus 186 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~LK~~L~~~~~~lFg~-~~~~~~~~~~~~~~~~~~ 264 (460)
T TIGR00469 186 DIRGTEADLNKENVKIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSIEGITKDLFGK-KISSMIKNKANNTPKELK 264 (460)
T ss_pred hhhhccccccccCcceeccCcccccccccchhhhccHHHHHHHHHHHHHHHHHHHHHHhch-hhhhhccccccccCccce
Confidence 2 33 5 89999999999999995 45 8
Q ss_pred EEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccc
Q psy9576 248 IRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 248 ~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~ 327 (338)
+||+|+|||||+||+|++|.| +++|+||||||||||+||+++|++++.|.|||||||||||||++|||+|||+||
T Consensus 265 ~r~~ps~fPftePs~evdi~~-----~g~WiEi~gcG~v~p~vl~~~g~~~~~~~g~AfGiGleRlaMl~~gi~DiR~~~ 339 (460)
T TIGR00469 265 VRWIDAYFPFTAPSWEIEIWF-----KDEWLELCGCGIIRHDILLRAGVHPSETIGWAFGLGLDRIAMLLFDIPDIRLFW 339 (460)
T ss_pred EEEEeccCCCCCcceEEEEEE-----CCeeEEEeeeccCcHHHHHHcCCCccceEEEEEEecHHHHHHHHcCccHHHHHh
Confidence 999999999999999999999 456999999999999999999999998999999999999999999999999999
Q ss_pred cCChhhhccC
Q psy9576 328 KGNINFLKQF 337 (338)
Q Consensus 328 ~~d~rfl~qf 337 (338)
+||+|||+||
T Consensus 340 ~~d~rfl~qf 349 (460)
T TIGR00469 340 SNDEGFLRQF 349 (460)
T ss_pred cccHHHHHhh
Confidence 9999999999
No 7
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=100.00 E-value=2.2e-64 Score=500.42 Aligned_cols=235 Identities=34% Similarity=0.619 Sum_probs=215.4
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeC-CccccchhhhhhcCCCCCCCCCcCccceeecCCccC---
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--- 166 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~-~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--- 166 (338)
.+++++|+.....|+.||+++++++||++|.+|||+|+.+ +.++++++|||+||+|++||||++||||||++|...
T Consensus 213 ~yn~~~~~~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~ 292 (494)
T PTZ00326 213 EYNFNALGKKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVN 292 (494)
T ss_pred cceecCCCCCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccc
Confidence 4788999988999999999999999999999999999965 599999999999999999999999999999875311
Q ss_pred --------------------------------CCcceEeccchHHHHHHHhcC-------C--CCceEEEeeeEEEeC-C
Q psy9576 167 --------------------------------NNKPLLRTHTSPMQIRYSKIN-------K--PPIKVITSGRVYRID-S 204 (338)
Q Consensus 167 --------------------------------~~~~~LRt~lsp~~l~~l~~~-------~--~pirifeiG~Vyr~d-~ 204 (338)
....+||||||++++|.|.++ . +|+|+|++|+|||+| .
T Consensus 293 ~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~ 372 (494)
T PTZ00326 293 DLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETL 372 (494)
T ss_pred cCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCC
Confidence 135799999999999999753 2 699999999999999 5
Q ss_pred CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 205 DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 205 d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
|+||+++|||++|+++|+++++.+|++++..|++++ |. .++||+|+|||||+||+|++++|. . .++|+|||+||
T Consensus 373 DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l-G~--~~~RfrP~yfPfTEPS~Ev~v~~~--~-~gkWIEIgg~G 446 (494)
T PTZ00326 373 DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI-GI--TKLRFKPAFNPYTEPSMEIFGYHP--G-LKKWVEVGNSG 446 (494)
T ss_pred CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc-CC--CceEEecCCCCCCCCeeEEEEEec--C-CCcEEEEeCcC
Confidence 999999999999999999999999999999999999 84 689999999999999999999982 1 23499999999
Q ss_pred ecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChh
Q psy9576 285 QVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNIN 332 (338)
Q Consensus 285 ~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~r 332 (338)
++||+||+++|+ |++++|+||||||||+||++|||+|||+||++|+.
T Consensus 447 m~rpevL~~~Gi-~~~~~~~A~GlGleRlaMi~ygi~DIR~l~~~~v~ 493 (494)
T PTZ00326 447 IFRPEMLRPMGF-PEDVTVIAWGLSLERPTMIKYGIKNIRDLFGHKVD 493 (494)
T ss_pred ccCHHHHHhcCC-CCcceEEEEEecHHHHHHHHhCCcHHHHHhccCCC
Confidence 999999999999 46799999999999999999999999999999974
No 8
>PLN02788 phenylalanine-tRNA synthetase
Probab=100.00 E-value=7.1e-64 Score=487.05 Aligned_cols=228 Identities=35% Similarity=0.623 Sum_probs=211.8
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhhC---CCeEeeC-CccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCc
Q psy9576 94 ITLPGRGKNKGGLHPIMRTLERIEKIFYSI---GFDITDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNK 169 (338)
Q Consensus 94 ~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~---GF~Ev~~-~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~ 169 (338)
++..++....|..||++.+.++|+++|.+| ||+++.+ ++++++++|||+||+|+|||||+++|||||++.
T Consensus 55 ~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~------ 128 (402)
T PLN02788 55 FSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQ------ 128 (402)
T ss_pred hccCCccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCC------
Confidence 345667889999999999999999999998 9999987 889999999999999999999999999999765
Q ss_pred ceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEc-------C-----CCCHHHHHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID-------K-----NISFSDLKGVYLNF 236 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g-------~-----~~~f~dLKg~l~~l 236 (338)
.+||||||++|++.|.++.+ ++|.+|+|||+|. |+||+|+|||+||++++ + ++++.||||+|+.+
T Consensus 129 ~lLRTHTSa~q~~~l~~~~~--~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l 206 (402)
T PLN02788 129 TVLRCHTSAHQAELLRAGHT--HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGL 206 (402)
T ss_pred ccccCCCcHHHHHHHHhCCC--cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHH
Confidence 79999999999999987543 9999999999995 99999999999999996 2 38999999999999
Q ss_pred HHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
++.+||. .+++|+|+||||||||+|++|+| +++|+|++|||+|||+|++++|++++ +|||||||||||+|+
T Consensus 207 ~~~lfg~--~~~r~~~s~fPft~Ps~e~dI~~-----~g~WlEvlG~G~vhP~Vl~~~gi~~~--~g~AfglgLeRLaml 277 (402)
T PLN02788 207 ARHLFGD--VEMRWVDAYFPFTNPSFELEIFF-----KGEWLEVLGCGVTEQEILKNNGRSDN--VAWAFGLGLERLAMV 277 (402)
T ss_pred HHHhcCC--CceEEecCCCCCCCCCeEEEEEE-----CCEEEEEeeEEEEcHHHHHHcCCCCC--cEEEEEEeHHHHHHh
Confidence 9999995 67899999999999999999998 45699999999999999999999842 799999999999999
Q ss_pred HcCCCcccccccCChhhhccCC
Q psy9576 317 RYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 317 ~~~i~diR~~~~~d~rfl~qf~ 338 (338)
+|||+|||+||++|+|||+||.
T Consensus 278 ~~~I~DIRlf~~~D~rfl~Qf~ 299 (402)
T PLN02788 278 LFDIPDIRLFWSDDERFTSQFK 299 (402)
T ss_pred hcCCchhhhhhcccHHHHHhcc
Confidence 9999999999999999999994
No 9
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=100.00 E-value=1.7e-53 Score=429.94 Aligned_cols=237 Identities=39% Similarity=0.745 Sum_probs=218.9
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc-----
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV----- 165 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~----- 165 (338)
.+|++.|+.....|..||.+++.+.+|++|.++||+|+.+|.++++++|||+|++|.+||||+++||||+..|..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~ 296 (489)
T PRK04172 217 PYNVKAPPPKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPE 296 (489)
T ss_pred cceeCCCCCCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcH
Confidence 478999998899999999999999999999999999999999999999999999999999999999999986520
Q ss_pred ----------------------------CCCcceEeccchHHHHHHHhc-CCCCceEEEeeeEEEeCC-CCCCCcceeEE
Q psy9576 166 ----------------------------SNNKPLLRTHTSPMQIRYSKI-NKPPIKVITSGRVYRIDS-DSTHSPMFHQI 215 (338)
Q Consensus 166 ----------------------------~~~~~~LRt~lsp~~l~~l~~-~~~pirifeiG~Vyr~d~-d~th~~~f~ql 215 (338)
.....+||||++|+++|.+.. +..|+|+||+|+|||++. +++|.++|||+
T Consensus 297 ~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql 376 (489)
T PRK04172 297 ELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQL 376 (489)
T ss_pred HHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheE
Confidence 012359999999999999874 578999999999999994 88999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCC
Q psy9576 216 EGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMN 295 (338)
Q Consensus 216 ~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~g 295 (338)
+++++|.+++|+++||+++.+++.+ |. .+++|+|+++||+|||++++|++ . +.||.+||+||++||+|++++|
T Consensus 377 ~~~i~G~~~~f~elkg~l~~ll~~l-Gi--~~~~~~~~~~p~~~P~~~~~i~~---~-g~~w~eiG~~G~l~Pevl~~~g 449 (489)
T PRK04172 377 EGIVMGEDVSFRDLLGILKEFYKRL-GF--EEVKFRPAYFPFTEPSVEVEVYH---E-GLGWVELGGAGIFRPEVLEPLG 449 (489)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHh-CC--ceEEEcCCcCCCCCCeEEEEEEE---C-CCCeEEEEeccccCHHHHHHCC
Confidence 9999999999999999999999999 85 46899999999999999999987 1 3469999999999999999999
Q ss_pred CCCCCeEEEEEeechhHHHHHHcCCCcccccccCChhhhccC
Q psy9576 296 LDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337 (338)
Q Consensus 296 i~~~~~~~~afelglerlam~~~~i~diR~~~~~d~rfl~qf 337 (338)
++ .+|+|||||+|||+|++|||+|||+||++|++||+|.
T Consensus 450 i~---~~v~~~el~le~l~m~~~~~~dir~l~~~d~~~~~~~ 488 (489)
T PRK04172 450 ID---VPVLAWGLGIERLAMLRLGLDDIRDLYSSDIEWLRER 488 (489)
T ss_pred CC---CceEEEEEcHHHHHHHHhCCcHHHHHHhcChHHHhcC
Confidence 97 7899999999999999999999999999999999985
No 10
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=100.00 E-value=1.2e-50 Score=394.08 Aligned_cols=254 Identities=26% Similarity=0.444 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhh
Q psy9576 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNF 140 (338)
Q Consensus 61 n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf 140 (338)
...+++++.+|.+-+..++... ++-..|......|+.||+..+++++|+...+|||.|+++|.+.++.+.+
T Consensus 10 ~~~~~dfe~aw~~~~~~~~~~~---------~~~~ypr~~~~~gk~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~ 80 (533)
T TIGR00470 10 ELAEKDFETAWRETRALLKDKH---------IDNKYPRLKFVYGKPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIY 80 (533)
T ss_pred HHHHhhHHHHHHhCcccccCCC---------ccccCCcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHH
Confidence 3457788899988877766544 5556888899999999999999999999999999999999999886655
Q ss_pred hh-----------------cCCCCCCCCC-----------cCc-------------------------------------
Q psy9576 141 TA-----------------LNSPKNHPAR-----------SMH------------------------------------- 155 (338)
Q Consensus 141 ~~-----------------L~~p~~hpar-----------~~~------------------------------------- 155 (338)
.. |..|.-.-++ +..
T Consensus 81 kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~ 160 (533)
T TIGR00470 81 KQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNE 160 (533)
T ss_pred HhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchH
Confidence 21 1222111100 000
Q ss_pred ------cceee----cCCccCCCcceEeccchHHHHHHHh----cCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEE
Q psy9576 156 ------DTFYI----KNRYVSNNKPLLRTHTSPMQIRYSK----INKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLW 219 (338)
Q Consensus 156 ------dt~~i----~np~~~~~~~~LRt~lsp~~l~~l~----~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~ 219 (338)
|.++- ..| .+...+|||||||+|+++|+ ++.+|+|+|++|+|||+| . |+||+++|||++|++
T Consensus 161 ~~~~ild~vfpefk~l~p--~s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLV 238 (533)
T TIGR00470 161 MGLKVLETVFPEFKDLKP--ESTTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVV 238 (533)
T ss_pred HHHHHHHHhChhhhhcCh--HhhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEE
Confidence 00000 000 15668999999999999997 456899999999999999 4 899999999999999
Q ss_pred EcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhh
Q psy9576 220 IDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCN 293 (338)
Q Consensus 220 ~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~ 293 (338)
+|+++||.||||+++.|++++ |. .++||+|+ |||||+ +|+++.| .+ .+||+|||+|||+||+||++
T Consensus 239 VdedVSf~DLKgvLe~LLr~L-G~--~~vRFRPsekrskyYFPFTE--aEVdV~~--~k-~~gWiEIgG~GmVhPeVL~~ 310 (533)
T TIGR00470 239 VDEEVSVDDGKAVAEGLLAQF-GF--TKFRFRPDEKKSKYYIPETQ--TEVYAYH--PK-LGEWIEVATFGVYSPIALAK 310 (533)
T ss_pred ECCCCCHHHHHHHHHHHHHHh-CC--ceEEeccCcCCCCCcCCCce--EEEEEEc--cC-CCceEEEEeccccCHHHHHH
Confidence 999999999999999999999 94 67999999 999999 7888876 34 45899999999999999999
Q ss_pred CCCCCCCeEEEEEeechhHHHHHHcCCCcccc-----ccc----CChhhhcc
Q psy9576 294 MNLDPEKYIGFAFGSGLERLTMLRYGIDDLRL-----FYK----GNINFLKQ 336 (338)
Q Consensus 294 ~gi~~~~~~~~afelglerlam~~~~i~diR~-----~~~----~d~rfl~q 336 (338)
+||+ +|++|||||+|||||++|||+|||+ ||. .|..+++.
T Consensus 311 ~GId---~PV~AFGIGVERlAMi~ygi~DIR~l~~pql~~~~~~sd~~~~~~ 359 (533)
T TIGR00470 311 YNID---VPVMNLGLGVERLAMILYGYEDVRAMVYPQIYGEYRLSDRDIAGM 359 (533)
T ss_pred cCCC---CceEEEEecHHHHHHHHhCCcHHHhhcccccccccccchHHHHhh
Confidence 9998 6789999999999999999999999 786 78887764
No 11
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=100.00 E-value=6.6e-45 Score=331.91 Aligned_cols=215 Identities=56% Similarity=0.980 Sum_probs=193.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
||++++.+.||++|+++||+|+.++++++...++++++.+.+||.+.+.+.++|.||. +++||||++|++++++++
T Consensus 1 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~----~~~LR~sLlp~LL~~l~~ 76 (218)
T cd00496 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA----RLLLRTHTSAVQARALAK 76 (218)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc----eEEEeccCcHHHHHHHHh
Confidence 7899999999999999999999999998876678999888888888887889999994 689999999999999988
Q ss_pred CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc--CCCeeEEEccCCCCCCCCceE
Q psy9576 187 NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE--SDNIQIRFRPSYFPFTEPSAE 263 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg--~~~~~~r~~ps~fpf~~Ps~e 263 (338)
+..|+|+||+|+||+++. +.+|.|++++++++++|..++|+++||+++.+++.+ | . ..++|.++..|+.||+.+
T Consensus 77 N~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l-~~~~--~~~~~~~~~~~~~hp~~s 153 (218)
T cd00496 77 LKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL-FGPI--TKVRFRPSYFPFTEPSFE 153 (218)
T ss_pred cCCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh-cCCC--ceeEecCCcCCCCCCcEE
Confidence 777999999999999984 567888999999999999999999999999999998 7 3 246788899998899999
Q ss_pred EEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChh
Q psy9576 264 IDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNIN 332 (338)
Q Consensus 264 ~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~r 332 (338)
++|++ +|. .+|.+||.+|+|||+|++++||+ +++++++|||++|+|+|++|||+|||+||++|+|
T Consensus 154 a~i~~-~g~--~~~~~iG~~G~lhP~vl~~~~i~-~~~~v~~~Eidl~~l~~~~~~~~~~~~~~~~~~~ 218 (218)
T cd00496 154 VDVYC-PGC--LGWLEILGCGMVRPEVLENAGID-EEYSGFAFGIGLERLAMLKYGIPDIRLFYSNDLR 218 (218)
T ss_pred EEEEe-CCC--CCeEEEEecccccHHHHHHCCCC-CCceEEEEEecHHHHHHHHhCCcHHHHHhhcCCC
Confidence 99987 221 25778999999999999999992 2389999999999999999999999999999986
No 12
>KOG2784|consensus
Probab=100.00 E-value=5.2e-44 Score=335.00 Aligned_cols=229 Identities=37% Similarity=0.661 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEe-eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC------
Q psy9576 94 ITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDIT-DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS------ 166 (338)
Q Consensus 94 ~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev-~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~------ 166 (338)
...-|..+..|.+||+.++..+.|+||..|||+|+ .+..+++.++|||+|..|..||||+.+|||++.+|..+
T Consensus 199 F~a~G~~p~~G~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~d 278 (483)
T KOG2784|consen 199 FNAEGVPPSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPED 278 (483)
T ss_pred cccCCCCCCCCccchHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHH
Confidence 33445678899999999999999999999999999 88889999999999999999999999999999988532
Q ss_pred ---------------------------CCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeE
Q psy9576 167 ---------------------------NNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQ 214 (338)
Q Consensus 167 ---------------------------~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~q 214 (338)
....+|||||+.+..|.|.+ ...|.|+|+|.+|||++ .|+||+.+|||
T Consensus 279 Y~~rVk~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQ 358 (483)
T KOG2784|consen 279 YLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQ 358 (483)
T ss_pred HHHHHHHHHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhh
Confidence 45579999999998887733 35799999999999999 59999999999
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhC
Q psy9576 215 IEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNM 294 (338)
Q Consensus 215 l~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~ 294 (338)
++|+++|+++++.||.|++..|+..+ |. ...||.|.|.||||||.++..+. +| -..|+|||-.|+.||+.+..+
T Consensus 359 VEGviad~gltLgdLig~l~~ff~~l-g~--tnlrfKPaynpYtepsmeif~yh-~g--l~kwvEvgnSg~frPeml~pM 432 (483)
T KOG2784|consen 359 VEGVIADKGLTLGDLIGILMEFFTKL-GA--TNLRFKPAYNPYTEPSMEIFSYH-HG--LFKWVEVGNSGMFRPEMLLPM 432 (483)
T ss_pred hceeeecCCCcHHHHHHHHHHHHhcc-CC--ccccccCCCCCCCCceeEEEEec-cc--cceEEEEcCCCCCCHhHhhcc
Confidence 99999999999999999999999999 85 78999999999999999998764 22 246999999999999999999
Q ss_pred CCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 295 NLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 295 gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
|++ ....+.++|+.+||-.|++|||.+||.+..-
T Consensus 433 GLp-~Dv~vl~~glslErptmIkyg~~nir~l~gh 466 (483)
T KOG2784|consen 433 GLP-MDVVVLAWGLSLERPTMIKYGIQNIRWLKGH 466 (483)
T ss_pred CCC-ccceeeeecccccCchhhhhhhcchHHhhcc
Confidence 986 5688999999999999999999999998765
No 13
>KOG2783|consensus
Probab=100.00 E-value=4.3e-39 Score=303.98 Aligned_cols=224 Identities=41% Similarity=0.699 Sum_probs=194.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhCC---CeEe--eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceE
Q psy9576 98 GRGKNKGGLHPIMRTLERIEKIFYSIG---FDIT--DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLL 172 (338)
Q Consensus 98 ~~~~~~G~~hp~~~~~~~Ir~~~~~~G---F~Ev--~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~L 172 (338)
++....-..||+..+.+.|.+.|...| |+.. .+| +++.+.|||.|.+|.+|+.|...||+|+++. .+|
T Consensus 63 gr~lh~~~~hplg~lr~~i~~~f~~~~~~~fs~~~~~sp-vvt~~qnfdsl~~p~dh~sr~ksdtyy~n~~------~~l 135 (436)
T KOG2783|consen 63 GRNLHQKESHPLGILRQRIEDYFYKTYRNLFSIFENESP-VVTTYQNFDSLLFPADHVSRSKSDTYYVNHT------HCL 135 (436)
T ss_pred ccchhhhccCchhHHHHHHHHHHHHhhcccchhccCCCc-eeehhhhcccccCcccccccCcCCceeecce------eee
Confidence 344555678999999999999998766 4655 344 4466789999999999999999999999887 899
Q ss_pred eccchHHHHHHHhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCC-------------------CC-------
Q psy9576 173 RTHTSPMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKN-------------------IS------- 225 (338)
Q Consensus 173 Rt~lsp~~l~~l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~-------------------~~------- 225 (338)
|+||+.++.+.++.... ..--+|+|||+| .|.||+|.|||++++..-.. .+
T Consensus 136 r~htsahq~e~~~~~~~--~flv~~DVyrrdeidsthypvfhq~eg~~~~s~~~l~~~~~d~~~ve~~~~~s~~~~~~~~ 213 (436)
T KOG2783|consen 136 RAHTSAHQHELFQKGLD--GFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWSKDELFGKKPDGKNVAELFSGSSATLRSPN 213 (436)
T ss_pred hhcchhhHHHHHHhccc--ccceeeeeeeeccccccccceeccccceeEEecchhhcccccccceecccccccccccccc
Confidence 99999999999987643 334499999999 59999999999999876320 01
Q ss_pred -------------HHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhh
Q psy9576 226 -------------FSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLC 292 (338)
Q Consensus 226 -------------f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~ 292 (338)
=.++|-.++.++..+||. ..++|+...|||||+||.|+.|+. .+.|+|+.|||.+.-.+++
T Consensus 214 kq~~~t~e~~~~~~~~lk~~l~~L~~~Lf~~-~~~~rwV~~yfpft~ps~eleI~~-----~~~wlevlgcgvi~~~il~ 287 (436)
T KOG2783|consen 214 KQEKHTLEATKLAEQHLKQTLEGLCDELFGK-EVEYRWVDAYFPFTHPSWELEIYF-----KGEWLEVLGCGVMRQRLLK 287 (436)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhccc-hhheeheeeEcccCCCCeEEEEEe-----cCCcHhhhccchhHHHHHh
Confidence 147899999999999996 678999999999999999999988 5669999999999999999
Q ss_pred hCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 293 ~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
..|+. .+-+||||||||||||+.|+|+|||+||++|-|||+||.
T Consensus 288 ~ag~~--~~igwafglgLerLAMll~~IpDiRlfWs~DeRFlkqF~ 331 (436)
T KOG2783|consen 288 RAGLN--NYIGWAFGLGLERLAMLLFDIPDIRLFWSFDERFLKQFS 331 (436)
T ss_pred hcccc--ceeeeeeeccHHHHHHHHhcCcchheeeccchHHHHhcC
Confidence 99997 589999999999999999999999999999999999994
No 14
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=100.00 E-value=6.3e-35 Score=284.72 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=177.4
Q ss_pred ccccCCCCCCC-------CCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee
Q psy9576 88 KTNKIDITLPG-------RGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI 160 (338)
Q Consensus 88 ~~~~id~tlp~-------~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i 160 (338)
.-+++...+|. ...+.|+.||++.+.+.||++|.++||+|+.+|.++++ ..++.|+.+.++.. ..+.|++
T Consensus 214 gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~e-E~~E~m~~~~g~eI--~n~Iyk~ 290 (453)
T TIGR02367 214 PFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPA-EYIERMGIDNDTEL--SKQIFRV 290 (453)
T ss_pred cccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecch-HHHHhhcCccCCcc--cccceEe
Confidence 34567788893 46899999999999999999999999999999999854 45788887654322 2234444
Q ss_pred cCCccCCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHH
Q psy9576 161 KNRYVSNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLN 235 (338)
Q Consensus 161 ~np~~~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ 235 (338)
. ++.+||++++|++++.+.. ...|+|+||+|+|||.| .+.+|..+|+|+++.++|.+.+|.|+++++..
T Consensus 291 e------e~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e 364 (453)
T TIGR02367 291 D------KNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKD 364 (453)
T ss_pred c------CceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 3 3489999999999998854 25699999999999999 58999999999999999999999999999999
Q ss_pred HHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeE--eeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 236 FIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEI--SGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 236 ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwiei--g~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
+++.+ |. .+++.. .|...|+..++|. .||+|| |++|++|| |.+|||+ +|+.|||||||||
T Consensus 365 ~Lr~L-GI---dfeitE--~s~FI~GR~A~I~-------~G~~Ev~~GvfGEihp--L~~fGIe---~PVvAfEI~LeRL 426 (453)
T TIGR02367 365 FLDHL-EI---DFEIVG--DSCMVYGDTLDIM-------HGDLELSSAVVGPIPL--DREWGID---KPWIGAGFGLERL 426 (453)
T ss_pred HHHHC-CC---ceEEeC--CCceEecceeeee-------cCCEEEeeEEEeeccc--ccccCCC---CccEEEEeehhHH
Confidence 99998 85 344432 2444566666764 368888 99999996 9999997 8999999999999
Q ss_pred HHHHcCCCcccccc
Q psy9576 314 TMLRYGIDDLRLFY 327 (338)
Q Consensus 314 am~~~~i~diR~~~ 327 (338)
+|++||++|||++-
T Consensus 427 am~~~g~~dir~~~ 440 (453)
T TIGR02367 427 LKVKHDFKNIKRAA 440 (453)
T ss_pred HHHHhCcHHHHHHH
Confidence 99999999999874
No 15
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=5.4e-32 Score=277.20 Aligned_cols=205 Identities=24% Similarity=0.329 Sum_probs=179.3
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|. ..+.|..++.+++.+++|++|+++||+|+.++++++...|++.++++.+| +.+.|.||. ++
T Consensus 341 Gyd~i~~~~p~-~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~------~~i~l~NPl-s~ 412 (552)
T PRK09616 341 GYNNLEPELPK-VFTIGRLHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEE------DYVEVLNPI-SE 412 (552)
T ss_pred CcccCCccCCC-CccCCCCChHHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCC------CeEEEcCCC-cc
Confidence 34678888887 56678999999999999999999999999999999987779999887654 248899996 89
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++++||||++|+++++++.+ ..|+|+||+|+||+++. +.++..++++++++++|..++|+++||+|+.++..+ |.
T Consensus 413 e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~l-gi 491 (552)
T PRK09616 413 DYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLREL-GI 491 (552)
T ss_pred chheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence 99999999999999999753 46899999999999873 445777889999999999999999999999999987 84
Q ss_pred CCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHH
Q psy9576 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLT 314 (338)
Q Consensus 244 ~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerla 314 (338)
++.|.++.+|+.||+.+++|++ ++ -+||++|+|||+|++++|++ .++++|||+++.|.
T Consensus 492 ---~~~~~~~~~~~~hPg~sa~I~~-----~g--~~iG~iG~lhP~v~~~~~i~---~~v~~~Eidl~~l~ 549 (552)
T PRK09616 492 ---EYEVEESEHPSFIPGRCADILV-----NG--KKIGVIGEIHPEVLENFGIE---VPVVAFEIDLEALL 549 (552)
T ss_pred ---eEEEecCCCCcccCCceEEEEE-----CC--EEEEEEEEECHHHHHhcCCC---CceEEEEEEHHHhh
Confidence 4678899999889999999987 22 27999999999999999997 78999999999874
No 16
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-32 Score=271.46 Aligned_cols=247 Identities=21% Similarity=0.390 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhh
Q psy9576 62 SIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFT 141 (338)
Q Consensus 62 ~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~ 141 (338)
..+++++.+|.+-+..++... ++-..|......|+.||+..+++++|+...+|||.|+++|.+.++.+.+.
T Consensus 11 ~~~~df~~aw~~~~~~~~~~~---------~~~~yp~~~~~~~~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~ 81 (529)
T PRK06253 11 LAKKDFEKAWKEGKKLIKPPG---------LNERYPRLKPSYGKPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYK 81 (529)
T ss_pred HHHhhHHHHHHhCcccccCCC---------ccccCCcccccCCCCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHH
Confidence 457788999988877776544 45558888999999999999999999999999999999999998866552
Q ss_pred h-----------------cCCCCCCCCCc---------------------------------------------------
Q psy9576 142 A-----------------LNSPKNHPARS--------------------------------------------------- 153 (338)
Q Consensus 142 ~-----------------L~~p~~hpar~--------------------------------------------------- 153 (338)
. |..|.-.-++.
T Consensus 82 qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~ 161 (529)
T PRK06253 82 QFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDE 161 (529)
T ss_pred hhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChH
Confidence 1 11121110000
Q ss_pred ----Cccceee----cCCccCCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC--CCCCCcceeEEEEEE
Q psy9576 154 ----MHDTFYI----KNRYVSNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLW 219 (338)
Q Consensus 154 ----~~dt~~i----~np~~~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~--d~th~~~f~ql~~l~ 219 (338)
+-|.++- ..| ...+++||||++|+++.+++. +..|+++||+|+||+++. +.+|...+++..++.
T Consensus 162 ~~~~~l~~vfpe~k~l~p--~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsGs~W~ 239 (529)
T PRK06253 162 MVLKILDEVFPEFKELKP--ESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSASCVI 239 (529)
T ss_pred HHHHHHHHhChHhhhcCC--ccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEccccc
Confidence 0000000 001 167789999999999999853 467999999999998862 445655555555444
Q ss_pred EcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC
Q psy9576 220 IDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297 (338)
Q Consensus 220 ~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~ 297 (338)
.+++++|+|+||+++.+++.+ |. .+++|+++ ..|+.||+.++.|.+.+++ ..||.+||.+|+|||.|++++||+
T Consensus 240 ~~e~vDFfDlKGiLE~LL~~L-GI--~~i~f~pse~~~p~fHPGRSAeI~v~hp~-~dGwkeIG~fGELHP~VLk~fDI~ 315 (529)
T PRK06253 240 ADEDVTVDDGKAVAEGLLSQF-GF--TKFKFRPDEKRSKYYTPDTQTEVYAYHPK-LDGWVEVATFGIYSPVALAEYGID 315 (529)
T ss_pred cCCCCCHHHHHHHHHHHHHHc-CC--CeEEEeecccCCCCcCCCeEEEEEEEeec-CCCCEEEEEEEEECHHHHHHcCCC
Confidence 456789999999999999987 85 34678887 5676699988888753333 368999999999999999999998
Q ss_pred CCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 298 PEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 298 ~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
+++++||||+|+|+|+.++++|||.+
T Consensus 316 ---~pV~aFELDLErL~~i~~~~~dir~~ 341 (529)
T PRK06253 316 ---VPVMNLGLGVERLAMILYGAEDVREM 341 (529)
T ss_pred ---CceEEEEEeHHHHHhhhcCccccccc
Confidence 78999999999999999999999996
No 17
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=5.2e-31 Score=257.79 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=167.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHH
Q psy9576 100 GKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPM 179 (338)
Q Consensus 100 ~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~ 179 (338)
..+.|+.||...+.+.||++|.++||+|+.+|.+++.. .|+.++.+.+++.++ +.|++.+ +.+||++++|+
T Consensus 197 ~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee-~~e~~g~~~g~~i~~--~my~ide------el~LRpsLtPs 267 (417)
T PRK09537 197 MYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE-YIERMGIDNDTELSK--QIFRVDK------NFCLRPMLAPG 267 (417)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHH-HHHHhCCCCcccchh--hheeeCC------ceEehhhhHHH
Confidence 57889999999999999999999999999999998654 588888765543332 3344433 38999999999
Q ss_pred HHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCC
Q psy9576 180 QIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSY 254 (338)
Q Consensus 180 ~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~ 254 (338)
+++.+.. ...|+|+||+|+|||++ .+.+|.++|+|+++.++|.+.+|.+++++++.+++.+ |. .++.. .
T Consensus 268 Llr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L-GI---~f~i~--s 341 (417)
T PRK09537 268 LYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL-GI---DYEII--G 341 (417)
T ss_pred HHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC-CC---CcEEe--c
Confidence 9998753 35799999999999999 4789999999999999999999999999999999998 85 33333 3
Q ss_pred CCCCCCceEEEEEeecCCCCCCCeeE--eeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 255 FPFTEPSAEIDIVFQDGPLKGNWLEI--SGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 255 fpf~~Ps~e~~i~~~~g~~~~gwiei--g~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
.+...|+..++|.. ||.|| |++|++| |+++|||+ +|++|||||||||+|++||++|||..
T Consensus 342 ~~~fi~GR~adI~~-------g~~el~~G~fGEi~--VLe~fGI~---~PVva~EIdLerL~~~~~g~~~ir~~ 403 (417)
T PRK09537 342 DNCMVYGDTIDIMH-------GDLELSSAVVGPIP--LDREWGID---KPWIGAGFGLERLLKVKHGYKNIKRA 403 (417)
T ss_pred CCcceecCeEEEEe-------CCEEEeeEEEEEEe--hhhhcCCC---CceEEEEEeHHHHHHHHhCcHHHHHh
Confidence 33445667777753 58788 9999995 99999998 89999999999999999999999975
No 18
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=99.97 E-value=6.4e-30 Score=263.59 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=173.4
Q ss_pred cccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCC
Q psy9576 89 TNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNN 168 (338)
Q Consensus 89 ~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~ 168 (338)
-++|+.++|.. .+.|..+|.+++.+.+|+.|+++||+|+.++.+++...+|++++.+.+. .+.+.|.||. +++
T Consensus 380 ydni~~~~P~~-~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~-----~~~v~I~NP~-s~e 452 (597)
T PLN02265 380 YNNIPKRKPKS-MTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDG-----NSAVIIGNPR-SAD 452 (597)
T ss_pred cccCCccCCCc-ccCCCCCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccC-----CceEEECCCc-chh
Confidence 46788888875 6779999999999999999999999999999999987779998876431 1348899996 899
Q ss_pred cceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCCC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC
Q psy9576 169 KPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDSD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD 244 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~ 244 (338)
+++||||++|+++++++.| ..|+|+||+|+||.++.+ .+...+..+++++++|+.++|+++||+|+.+++.+ |..
T Consensus 453 ~~vlRtSLlPgLL~~l~~N~~~~~p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l-~i~ 531 (597)
T PLN02265 453 FEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVL-GIP 531 (597)
T ss_pred HHHHHHhhHHHHHHHHHHhhcCCCCeeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHc-CCc
Confidence 9999999999999999652 359999999999988732 12224668999999999999999999999999987 851
Q ss_pred Ce------eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 245 NI------QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 245 ~~------~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .+.+.++..|+.||+..++|.+ +|+ .||.+|+|||+|+++||++ +|+++|||+++.|
T Consensus 532 ~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~-~g~------~iG~iGelhP~vl~~f~l~---~pv~~~Eidl~~l 596 (597)
T PLN02265 532 FVEIGDNNGYYVEPSNEPEYFPGRQASIIY-KGK------HVGTFGIVHPEVLNNFDIP---DPCSFLELDLEPL 596 (597)
T ss_pred ccccccCceEEEeecCCccccCCceEEEEE-CCe------EEEEEEEECHHHHHHCCCC---CceEEEEEEhHHh
Confidence 01 3444788888779999999987 222 7999999999999999997 8999999999965
No 19
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=99.97 E-value=1.6e-29 Score=258.75 Aligned_cols=203 Identities=22% Similarity=0.321 Sum_probs=171.9
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|.. .+.|..++.+.+.+.+|+.|+++||+|+.++++++....|++++++.+ +.+.|.||. ++
T Consensus 344 Gyd~I~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~-------~~v~l~NPi-s~ 414 (551)
T TIGR00471 344 GYNNFPPELPLI-NTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDN-------NDVKVANPK-TL 414 (551)
T ss_pred CcccCCccCCCc-cccCCcChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCC-------CcEEeCCCC-ch
Confidence 346778888875 566899999999999999999999999999999988666788876643 348899996 89
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++++||||++|++++++++| ..|+++||+|+||.++. +..+..++++++++++|..++|+++||+|+.++..+ |.
T Consensus 415 e~s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l-~i 493 (551)
T TIGR00471 415 EYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL-GI 493 (551)
T ss_pred hhhHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence 99999999999999999753 56899999999997763 222334458999999998899999999999999988 84
Q ss_pred CCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 244 ~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.+.|.++..|+.||+..++|++ +|+ .||++|+|||+|+++++++ .|+++|||+++.|
T Consensus 494 ---~~~~~~~~~~~~hpgrsa~I~~-~g~------~iG~iG~ihP~v~~~~~i~---~~v~~~Ei~l~~l 550 (551)
T TIGR00471 494 ---EYEIEESEHPSFIPGRGAKIVF-EGK------AIGHFGEIHPEVLTNFELE---FPVSAFEVNIEVF 550 (551)
T ss_pred ---ceEEeecCCCccCCCceEEEEE-CCc------EEEEEEEECHHHHHhCCCC---CceEEEEEEehhc
Confidence 3678888889779999999987 222 7899999999999999997 7899999999865
No 20
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=99.96 E-value=8.8e-29 Score=222.39 Aligned_cols=181 Identities=18% Similarity=0.296 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
+.+.+.||++|+++||+|+.++.+++.... +.++.+. .+.+.|.||+ ++++++||||++|+++++++.
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~-~~~~~~~-------~~~i~l~NPi-s~e~~~lR~sLlp~LL~~~~~N~~ 73 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEA-ELFDGGL-------DEAVELSNPL-SEEYSVLRTSLLPGLLDALARNLN 73 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHH-HhccCCC-------CCeEEEcCCC-chhHHHHHHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999887443 3443322 1358899996 899999999999999999964
Q ss_pred -CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC-----------CCHHHHHHHHHHHHHHhccCCCeeEEEccCC
Q psy9576 187 -NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN-----------ISFSDLKGVYLNFIRVFFESDNIQIRFRPSY 254 (338)
Q Consensus 187 -~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~-----------~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~ 254 (338)
+..|+++||+|+||.++.. +..+..+++++++|.. ++|+|+||+++.++..+ |. ...+..+++.
T Consensus 74 ~~~~~~~lFEiG~vf~~~~~--~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l-~~-~~~~~~~~~~ 149 (198)
T cd00769 74 RKNKPLRLFEIGRVFLKDED--GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL-GI-IVEFELEELD 149 (198)
T ss_pred CCCCCEeEEEeEeEEecCCC--CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc-CC-eEEEEecCCC
Confidence 3479999999999977531 3346679999999953 69999999999999988 84 2334344467
Q ss_pred CCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 255 FPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 255 fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.|+.||+..++|++ ++ ..||.+|+|||+|++++|++ .++++|||++|.|
T Consensus 150 ~~~~hpg~~a~I~~-----~g--~~vG~~G~lhP~v~~~~~l~---~~v~~~Ei~l~~l 198 (198)
T cd00769 150 ADLFHPGRSAKIYV-----NG--EVIGFIGELHPEVLKEFDLK---EPVYAFELDLDAL 198 (198)
T ss_pred CCccCCCceEEEEE-----CC--EEEEEEEeeCHHHHHHcCCC---CceEEEEEecccC
Confidence 77679999999987 22 27999999999999999997 7899999999853
No 21
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.6e-29 Score=235.04 Aligned_cols=251 Identities=22% Similarity=0.417 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchh
Q psy9576 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFN 138 (338)
Q Consensus 59 ~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~ 138 (338)
...-++..++.+|.+.++.++ .+.+|-..|...+..|+.||+..++.++|+...+|||+|+.+|.+.++.+
T Consensus 8 i~~la~~dFe~aW~eg~k~v~---------~p~~~~~YPRl~f~~Gk~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~e 78 (536)
T COG2024 8 IRKLAERDFERAWKEGKKLVR---------EPHLDERYPRLKFETGKPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEE 78 (536)
T ss_pred HHHHHHHHHHHHHHhhhhhhc---------CCCccccCCccccccCCcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHH
Confidence 445567788888888776554 34567778999999999999999999999999999999999999988765
Q ss_pred hhhhc---------------CCC--CC-----------------------------------------------------
Q psy9576 139 NFTAL---------------NSP--KN----------------------------------------------------- 148 (338)
Q Consensus 139 nf~~L---------------~~p--~~----------------------------------------------------- 148 (338)
.+... ++| .-
T Consensus 79 vykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d~~de~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~ 158 (536)
T COG2024 79 VYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGIDEPDEKVERLREVLHAYKKGEIDGDDLVHEIAEALEVD 158 (536)
T ss_pred HHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCCCchhhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccC
Confidence 54211 111 10
Q ss_pred -CCCCcCccceee----cCCccCCCcceEeccchHHHH----HHHhcCCCCceEEEeeeEEEeC--CCCCCCcceeEEEE
Q psy9576 149 -HPARSMHDTFYI----KNRYVSNNKPLLRTHTSPMQI----RYSKINKPPIKVITSGRVYRID--SDSTHSPMFHQIEG 217 (338)
Q Consensus 149 -hpar~~~dt~~i----~np~~~~~~~~LRt~lsp~~l----~~l~~~~~pirifeiG~Vyr~d--~d~th~~~f~ql~~ 217 (338)
|-+..+-|.++- ..| .+....||+|++.+-- ..+.+..+|+++|+|.+|||++ .|++|+..+|...|
T Consensus 159 d~~~~~vle~vFPEfk~Lkp--~s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASC 236 (536)
T COG2024 159 DGTGLRVLEEVFPEFKDLKP--ESSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASC 236 (536)
T ss_pred cchHHHHHHHhChHHhhcCC--CCCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceE
Confidence 000000011100 011 1455789999776542 2334568999999999999998 49999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCC--CCCCc--eEEEEEee--cC---CCCCCCeeEeeeeecCH
Q psy9576 218 LWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFP--FTEPS--AEIDIVFQ--DG---PLKGNWLEISGAGQVNP 288 (338)
Q Consensus 218 l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fp--f~~Ps--~e~~i~~~--~g---~~~~gwieig~~G~vhP 288 (338)
+++|++++..+.|.+.+.+++++ |. .+++|+|+..- |..|+ -||+-+.. .| +-..||+||..+|...|
T Consensus 237 Vvvde~vtvD~GKaVAEglL~qf-GF--e~F~FrpDEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP 313 (536)
T COG2024 237 VVVDEDVTVDDGKAVAEGLLRQF-GF--EKFRFRPDEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSP 313 (536)
T ss_pred EEEcCcccccccHHHHHHHHHHh-Cc--cceeeccccccccccCCCccceEEEecccccccccccCCCcEEEEeecccCh
Confidence 99999999999999999999998 94 77999997221 34444 34443332 12 21359999999999999
Q ss_pred HHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 289 KVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 289 ~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
..|..+||| |||+..|+|+|||||+.||++|+|.+
T Consensus 314 ~ALaeY~Id---~pVMNLGlGVERlaMIl~g~~DVR~m 348 (536)
T COG2024 314 IALAEYGID---YPVMNLGLGVERLAMILHGADDVRSM 348 (536)
T ss_pred HHHHHcCCC---CceeecchhHHHHHHHHhCchHHhhh
Confidence 999999999 99999999999999999999999986
No 22
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.93 E-value=2.6e-25 Score=236.45 Aligned_cols=203 Identities=20% Similarity=0.280 Sum_probs=166.7
Q ss_pred cccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCC
Q psy9576 89 TNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNN 168 (338)
Q Consensus 89 ~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~ 168 (338)
-++|+.++|....+.|..++.+.+.+++|+.|+++||+|+.++.+++..... .++.+. +.+.|.||. +++
T Consensus 469 yd~i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~-~~~~~~--------~~i~l~NPi-s~e 538 (791)
T PRK00629 469 YDNIPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAK-LFGLNP--------EPLLLLNPI-SEE 538 (791)
T ss_pred cccCcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHH-hcCCCC--------CeEEEeCCC-chH
Confidence 4678888886555678999999999999999999999999999998875443 455331 247889996 899
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC----------CCHHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN----------ISFSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~----------~~f~dLKg~l~ 234 (338)
+++||||++|+++++++. +..++++||+|+||..+. +...+..+++++++|.. ++|+++||+|+
T Consensus 539 ~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~--~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le 616 (791)
T PRK00629 539 LSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG--DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVE 616 (791)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC--CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHH
Confidence 999999999999999864 357999999999997642 22235579999999942 79999999999
Q ss_pred HHHHHhccCCCeeEEEcc-CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 235 NFIRVFFESDNIQIRFRP-SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~p-s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.++..+ |. . .+.|.+ ...|+.||+..+.|++ +|+ .||++|+|||+|++++|++ .++|+|||+++.|
T Consensus 617 ~ll~~l-~~-~-~~~~~~~~~~~~~hPg~sA~I~~-~g~------~iG~iG~lhP~v~~~~~l~---~~v~~~Ei~l~~l 683 (791)
T PRK00629 617 ALLEAL-GL-P-EVEFVAEFEAAALHPGRSAEIYL-DGK------VIGFIGELHPKVLKKLDLP---GRTYVFELDLDAL 683 (791)
T ss_pred HHHHHc-CC-C-ceeEeecCCCcCcCCceEEEEEE-CCE------EEEEEEEECHHHHHHcCCC---CCEEEEEEEHHHh
Confidence 999987 85 2 356777 7778779999999987 222 7899999999999999997 6899999999998
Q ss_pred HHH
Q psy9576 314 TML 316 (338)
Q Consensus 314 am~ 316 (338)
...
T Consensus 684 ~~~ 686 (791)
T PRK00629 684 LEA 686 (791)
T ss_pred hhh
Confidence 754
No 23
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=99.93 E-value=4.1e-25 Score=231.77 Aligned_cols=199 Identities=19% Similarity=0.223 Sum_probs=162.1
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|.. ...|..++.+.+.+.+|+.|+++||+|+.++.+++... + . . +.+.|.||. ++
T Consensus 380 GYdnI~~~~p~~-~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~-~-----~-~-------~~i~l~NPi-S~ 443 (704)
T CHL00192 380 GFNNFLSKLPNI-KFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQES-F-----S-K-------NEIKLKNPL-IK 443 (704)
T ss_pred CcccCccccccc-ccCCCCCHHHHHHHHHHHHHHhCCCceEecccccChhh-c-----C-C-------CcEEEeCCC-ch
Confidence 346788888864 56689999999999999999999999999999987642 1 1 1 247899996 89
Q ss_pred CcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcC------------CCCHHHHHH
Q psy9576 168 NKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDK------------NISFSDLKG 231 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~------------~~~f~dLKg 231 (338)
++++||||++|+++++++. +..++++||+|+||.++.+ ...+..+++++++|. .++|+|+||
T Consensus 444 e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~--~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg 521 (704)
T CHL00192 444 DYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS--SIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKG 521 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc--cccccceEEEEEECCCcCccccCCCCCccCHHHHHH
Confidence 9999999999999999964 3479999999999976532 234557899999884 469999999
Q ss_pred HHHHHHHHhccCCCeeEEEcc----CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEe
Q psy9576 232 VYLNFIRVFFESDNIQIRFRP----SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFG 307 (338)
Q Consensus 232 ~l~~ll~~lfg~~~~~~r~~p----s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afe 307 (338)
+|+.++..+ |. .+.|.+ +..|+.||+..++|++ ..| -.||++|+|||+|++++|++ .++++||
T Consensus 522 ~le~ll~~l-~i---~~~~~~~~~~~~~~~~hPgrsA~I~~-----~~g-~~iG~iG~lhP~v~~~~~l~---~~v~~~E 588 (704)
T CHL00192 522 IIENFFQKL-NL---PIYWKKYSDLDEKINFHPYCTSEIFL-----SNG-QKIGIFGQLHPLLANKLNLN---TEIYLFE 588 (704)
T ss_pred HHHHHHHHC-CC---cEEEEeccccccCcCCCCCcEEEEEE-----ECC-cEEEEEEEECHHHHHHcCCC---CCeEEEE
Confidence 999999988 84 255665 4567779999999986 222 27999999999999999997 7899999
Q ss_pred echhHHHHHH
Q psy9576 308 SGLERLTMLR 317 (338)
Q Consensus 308 lglerlam~~ 317 (338)
|+++.|....
T Consensus 589 i~l~~l~~~~ 598 (704)
T CHL00192 589 INLDILQYSI 598 (704)
T ss_pred EEHHHhhhhh
Confidence 9999986544
No 24
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=99.93 E-value=8.3e-25 Score=232.88 Aligned_cols=207 Identities=19% Similarity=0.220 Sum_probs=160.7
Q ss_pred cccCCCCCCCCCCCCCCCChHHH-HHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 89 TNKIDITLPGRGKNKGGLHPIMR-TLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 89 ~~~id~tlp~~~~~~G~~hp~~~-~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
-++|+.++|... ..+..++..+ ..+++|+.|+++||+|+.++.+++... ...++.+... +.+.|.||. ++
T Consensus 473 ydni~~~~p~~~-~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~-~~~~~~~~~~------~~i~l~NPi-s~ 543 (798)
T TIGR00472 473 YDNIPAEPLSVS-SKLNKNNENYLLLRKLRTLLVGLGLNEVITYSLVSSEK-AEKFNFPKLE------NLVEIKNPL-SN 543 (798)
T ss_pred cccCCCCCCCcc-cCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHH-HHhhcCCCCC------ceEEEeCCC-ch
Confidence 356777777643 3444555544 448999999999999999999988744 3455554321 248899996 89
Q ss_pred CcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC-----------CCHHHHHHH
Q psy9576 168 NKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN-----------ISFSDLKGV 232 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~-----------~~f~dLKg~ 232 (338)
++++||||++|+++++++. +.+++++||+|+||..+.. +..+..+++++++|.. ++|+++||.
T Consensus 544 e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~--~~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~ 621 (798)
T TIGR00472 544 ERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL--GVKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGD 621 (798)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC--CcchhhEEEEEEECCCCcccccCCCCcCChHHHHHH
Confidence 9999999999999999854 3678999999999976522 2335579999999853 699999999
Q ss_pred HHHHHHHhccCCCeeEEEcc-CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 233 YLNFIRVFFESDNIQIRFRP-SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~p-s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
|+.++..+ |. ...+.+.+ ...|+.||+..+.|++ ++ ..||++|+|||+|++++|+. .++++|||+++
T Consensus 622 le~ll~~l-~~-~~~~~~~~~~~~~~~hpg~sA~I~~-----~~--~~iG~iG~lhP~v~~~~~l~---~~v~~~Ei~l~ 689 (798)
T TIGR00472 622 VESLLELL-GL-SDDVYFKNTAENEELHPGQSATIYL-----KG--KKIGFIGELHPEIAKKYDLK---EPTFVAELDLD 689 (798)
T ss_pred HHHHHHHc-CC-CcceEEeecCCCCCCCCCcEEEEEE-----CC--EEEEEEEEECHHHHHHcCCC---CCeEEEEEEHH
Confidence 99999987 75 21334555 5667779999999987 22 27999999999999999997 78999999999
Q ss_pred HHHHHHc
Q psy9576 312 RLTMLRY 318 (338)
Q Consensus 312 rlam~~~ 318 (338)
.|.....
T Consensus 690 ~l~~~~~ 696 (798)
T TIGR00472 690 RLLESLK 696 (798)
T ss_pred HHhhhhc
Confidence 9875543
No 25
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.7e-25 Score=230.98 Aligned_cols=202 Identities=20% Similarity=0.323 Sum_probs=163.2
Q ss_pred ccccCCCCCCCCCC-CCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC
Q psy9576 88 KTNKIDITLPGRGK-NKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS 166 (338)
Q Consensus 88 ~~~~id~tlp~~~~-~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~ 166 (338)
.-++++.++|.... ..|..++.+.+.+.+|++|+++||+|+.++.+++...++..+...++ .+.|.||+ +
T Consensus 331 Gy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~--------~~~l~NPi-S 401 (650)
T COG0072 331 GYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDE--------ALELANPI-S 401 (650)
T ss_pred CcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCc--------ceEecCCc-c
Confidence 34678888887443 22348999999999999999999999999999999887776655432 57899996 8
Q ss_pred CCcceEeccchHHHHHHHhcC----CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEc----------CCCCHHHHHHH
Q psy9576 167 NNKPLLRTHTSPMQIRYSKIN----KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWID----------KNISFSDLKGV 232 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l~~l~~~----~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g----------~~~~f~dLKg~ 232 (338)
+++++|||+++|+++++++.| .+.+++||+|+||..+.+. ..+..+++++++| +.++|+++||.
T Consensus 402 ~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~--~~~~~~~~~l~~g~~~~~~w~~~~~v~f~d~Kg~ 479 (650)
T COG0072 402 EEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEA--ERETRHLAGLAAGLAGEESWQGKRPVDFYDAKGD 479 (650)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCcc--cchhHHHHHHhhccccccccccCCCcCHHHHHHH
Confidence 999999999999999999652 3459999999999997321 1111233444443 26899999999
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhH
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLER 312 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgler 312 (338)
|+.+++.+ | ..+.|++...|+.||+..+.|++ + + ..||++|+|||+|++++++. +++++|||+++.
T Consensus 480 ve~ll~~l-g---~~~~~~~~~~~~~hpgrsA~I~~-----~-~-~~iG~iGeiHP~vl~~~dl~---~~~~~fEi~l~~ 545 (650)
T COG0072 480 LEALLEAL-G---VEYEFEPAEHPAFHPGRSAAIYL-----N-K-EVIGFIGELHPEVLKEFDLP---GPVYVFEIDLDA 545 (650)
T ss_pred HHHHHHHh-C---CceEEEEccCCCccCCceEEEEE-----C-C-EEEEEEeeeCHHHHHhcCCC---CCeEEEEEehhh
Confidence 99999999 8 46788888888999999999987 3 2 37999999999999999997 889999999765
Q ss_pred HH
Q psy9576 313 LT 314 (338)
Q Consensus 313 la 314 (338)
+.
T Consensus 546 l~ 547 (650)
T COG0072 546 LL 547 (650)
T ss_pred hc
Confidence 43
No 26
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.87 E-value=9.3e-22 Score=175.84 Aligned_cols=190 Identities=19% Similarity=0.298 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC--
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN-- 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~-- 187 (338)
..+.+.+|++|.++||+|+.+|.+++... +...+.. + +.+.+.||. +++..+||++++|++++.+.++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~-~~~~~~~---~-----~~~~~~~~~-~~~~~~LR~s~~~~l~~~~~~n~~ 72 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPL-LEKAGHE---P-----KDLLPVGAE-NEEDLYLRPTLEPGLVRLFVSHIR 72 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHH-HHHcCcc---H-----hheeeeecC-CCCEEEECCCCcHHHHHHHHhhcc
Confidence 57889999999999999999999987633 3443322 1 124566774 6778899999999999998764
Q ss_pred CCCceEEEeeeEEEeCC-CC--CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccCCCeeEEEc-cCCCCCC-
Q psy9576 188 KPPIKVITSGRVYRIDS-DS--THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFESDNIQIRFR-PSYFPFT- 258 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~-d~--th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~~~~~~r~~-ps~fpf~- 258 (338)
..|+|+||+|+|||.+. .. +|..+|.|+++.++|... +|+++|++++.+++.+ |. ...+++. ....++.
T Consensus 73 ~~~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l-g~-~~~~~~~~~~~~~~~~ 150 (211)
T cd00768 73 KLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL-GI-KLDIVFVEKTPGEFSP 150 (211)
T ss_pred cCCEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc-CC-CcceEEEecCchhhcc
Confidence 47999999999999973 33 678899999999998754 7999999999999998 84 2244555 3344444
Q ss_pred -CCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-------CCCeEEEEEeechhHH
Q psy9576 259 -EPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-------PEKYIGFAFGSGLERL 313 (338)
Q Consensus 259 -~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-------~~~~~~~afelglerl 313 (338)
+|+..++|.+.++ ...|.+||.+|++||.+++++++. ...-++..+++++||+
T Consensus 151 ~~~g~~~~i~~~~~--~~~~~eig~~g~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~R~ 211 (211)
T cd00768 151 GGAGPGFEIEVDHP--EGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211 (211)
T ss_pred ccCCceEEEEEEcc--CCCeEEEeeceeecCchhHhhhhheecccccccCceeecCccCccCC
Confidence 8888888766211 123569999999999999988873 1112556677888874
No 27
>KOG2472|consensus
Probab=99.85 E-value=8.3e-21 Score=185.32 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=159.5
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--.||..|+|. ..+.|+.-|++++.+.+|.-++.+||+|+.++.++|...| +.+ ..-.+.|.||. +.
T Consensus 374 GyNNi~~~lP~-~~~~~~~~plNkl~d~lR~e~a~ag~~E~l~~~LcS~de~------~~d-----~~~AV~l~NPk-t~ 440 (578)
T KOG2472|consen 374 GYNNIQMTLPA-SNTIAKPFPLNKLTDILRIEVAAAGFTEALTFTLCSRDEN------VID-----GDKAVHLGNPK-TL 440 (578)
T ss_pred ccccccccCcc-hhcccCccchHHHHHHHHHHHHHhhhhhheeeeeeccccC------Ccc-----cccceEecCCC-ce
Confidence 45689999998 5569999999999999999999999999999999998763 111 11237889996 78
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++.++||+++||+++++..+ ..|+|+||+++|.-.| +..-....+++++++++|++..|+.+.|.|+.+++.- +.
T Consensus 441 efqv~RtsLlPGllKTv~~N~~~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~l~~~-~~ 519 (578)
T KOG2472|consen 441 EFQVVRTSLLPGLLKTVASNRKMPLPIKLFEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQLLNVP-PI 519 (578)
T ss_pred eeeeehhhhchHHHHHHHhccCCCCceeEEEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHHhcCC-cc
Confidence 99999999999999999654 4699999999999998 3223444568999999999999999999999777654 22
Q ss_pred CCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 244 DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 244 ~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
...+....+.-| .-||..+.|++ .|+ .||-+|.+||+|+.+|++. ++.-++|+++|.+
T Consensus 520 -~~~Y~i~~~~~~-yfpgr~A~v~~-~g~------~iG~~GvlhPev~~~F~l~---~~~s~~Ei~ie~~ 577 (578)
T KOG2472|consen 520 -RDSYYIEADEDP-YFPGRCAKVIV-EGK------VIGKIGVLHPEVLTKFELT---YPCSAVEIDIEPF 577 (578)
T ss_pred -ccceEEecCcCC-cCCCcceEEEE-cCc------eeeeecccCHHHHhhcCCC---CccceEEeeeEec
Confidence 122334444444 23666677765 233 7889999999999999998 9999999999864
No 28
>PF02912 Phe_tRNA-synt_N: Aminoacyl tRNA synthetase class II, N-terminal domain; InterPro: IPR004188 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases []. This is the N-terminal domain of phenylalanyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3PCO_C 1EIY_A 2RHS_C 2RHQ_A 2IY5_A.
Probab=99.69 E-value=2.1e-18 Score=130.83 Aligned_cols=73 Identities=32% Similarity=0.561 Sum_probs=69.7
Q ss_pred hcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Q psy9576 16 STAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLK 88 (338)
Q Consensus 16 ~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~ 88 (338)
++|+|+++|+++|++||||||.|+.+|++|+++|+|+||.+|+.+|++|+.|+++++++++.|+..+++++|+
T Consensus 1 ~~a~~~~~Le~~r~~~LGKKG~lt~~~k~l~~l~~eek~~~G~~iN~~K~~i~~~~~~~~~~L~~~~~~~~L~ 73 (73)
T PF02912_consen 1 QQAKDLEELEELRVKYLGKKGELTQLLKQLKKLPPEEKPEFGKKINELKQEIEEALEEKKEELEAAELEAKLA 73 (73)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHCCSCTCTTTTCGGCTTTHHHHCCHHHHCHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCccHHHHHHHHhhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999888763
No 29
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.35 E-value=4.8e-11 Score=112.33 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++.+.+|++|...||.||.+|.++.... +. ..+.|.+.... ......||+|.--.+-+.+..+.
T Consensus 4 rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~--~~-----------~~~~f~~~~~~-~g~~~~L~~Spql~~~~~~~~~~ 69 (269)
T cd00669 4 RSKIIKAIRDFMDDRGFLEVETPMLQKITG--GA-----------GARPFLVKYNA-LGLDYYLRISPQLFKKRLMVGGL 69 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEeccCC--cc-----------ccceEEeeecC-CCCcEEeecCHHHHHHHHHhcCC
Confidence 367899999999999999999999975311 10 01335442110 11225777663333333333332
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|+|++|+|||.+ .+.+|.+||+|+++-.+.. ++.++...++.+++.++
T Consensus 70 --~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~--~~~dvm~~~e~lv~~i~ 119 (269)
T cd00669 70 --DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFA--DYEDVIELTERLVRHLA 119 (269)
T ss_pred --CcEEEEecceeCCCCCCCcccceeEEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 2999999999999 4889999999999987764 78888888888877664
No 30
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=99.18 E-value=3.6e-10 Score=108.23 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC--CccCCCcceEeccchHHHH--HHH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN--RYVSNNKPLLRTHTSPMQI--RYS 184 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n--p~~~~~~~~LRt~lsp~~l--~~l 184 (338)
...+.+.+|++|...||.||.+|.+++.. .-+. + + +.|.+.- +........||+| |.+. +.+
T Consensus 4 rs~i~~~ir~~f~~~gF~EV~TP~l~~~~-~~e~------~-~----~~F~~~y~~~~~~~~~~yL~~S--pql~lk~ll 69 (304)
T TIGR00462 4 RARLLAAIRAFFAERGVLEVETPLLSPAP-VTDP------H-L----DAFATEFLGPDGEGRPLYLQTS--PEYAMKRLL 69 (304)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecCC-CCCc------C-C----cceeeeccCCCCCCcceeeecC--HHHHHHHHH
Confidence 46789999999999999999999998642 1110 0 0 1122210 0000122567766 5442 344
Q ss_pred hcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 185 KINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
...- -|||++|+|||++ .+.+|.|||+||++..++ .++.|+...++.+++.++
T Consensus 70 ~~g~--~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~--~d~~d~m~~~e~li~~i~ 123 (304)
T TIGR00462 70 AAGS--GPIFQICKVFRNGERGRRHNPEFTMLEWYRPG--FDYHDLMDEVEALLQELL 123 (304)
T ss_pred hccC--CCEEEEcCceeCCCCCCCcccHHHhHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 4333 3999999999999 578999999999996655 478888888888776665
No 31
>PRK06462 asparagine synthetase A; Reviewed
Probab=99.18 E-value=7.9e-10 Score=107.22 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHHhcC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYSKIN 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l~~~ 187 (338)
...+.+.+|++|.+.||.||.+|.++..... .+.-..+.|+ .++.++-. + ....|+ +||.+. +.+...
T Consensus 33 Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~--~~~~g~~~~~----~~~~~~~~--~-~~~yL~--~Spql~k~ll~~g 101 (335)
T PRK06462 33 QSSILRYTREFLDGRGFVEVLPPIISPSTDP--LMGLGSDLPV----KQISIDFY--G-VEYYLA--DSMILHKQLALRM 101 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeEecCCCC--CCCccccCCc----cccccccC--C-Cceeec--cCHHHHHHHHHhh
Confidence 3678999999999999999999999754110 0000000111 12222111 1 113454 445554 333333
Q ss_pred CCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDS---THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
. -|||++|+|||++ .+. +|.|||+|+++..++ .++.++...++.+++.++
T Consensus 102 ~--~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~--~d~~dlm~~~e~lv~~i~ 155 (335)
T PRK06462 102 L--GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEG--ADLDEVMDLIEDLIKYLV 155 (335)
T ss_pred c--CcEEEEeccccCCCCCCCCCCCCCchheeeehhhc--CCHHHHHHHHHHHHHHHH
Confidence 2 4999999999999 566 999999999998887 478888888887776554
No 32
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.15 E-value=1.7e-09 Score=104.67 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHH-hcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYS-KIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l-~~~ 187 (338)
..+...+|++|.+.||.||.+|.+.+.... .. .+.|.+.... ......|++ ||.+. +.+ ...
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~-------~~------~~~f~~~~~~-~~~~~yL~~--Spql~~k~ll~~g 75 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG-------AA------ARPFITHHNA-LDMDLYLRI--APELYLKRLIVGG 75 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC-------cc------ceeEEeccCC-CCcceeecc--CHHHHHHHHHhcC
Confidence 578899999999999999999999654210 00 1223221110 112245654 46553 333 333
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
. -|||++|+|||.+ .+.+|++||+|+++-.++ .++.++...++.+++.++
T Consensus 76 ~--~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~--~~~~~~m~~~e~li~~i~ 126 (329)
T cd00775 76 F--ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY--ADYNDMMDLTEDLFSGLV 126 (329)
T ss_pred C--CcEEEEeccccCCCCCCCCCCceEEEEEeeec--CCHHHHHHHHHHHHHHHH
Confidence 2 4999999999999 589999999999998876 488888888888887654
No 33
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=99.15 E-value=2.4e-09 Score=101.41 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~ 186 (338)
...+.+.||++|...||.||.+|.++.... -.+ + + |.+.-.....+...|++ ||.+.. .+..
T Consensus 4 Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~-~g~---------~---~-f~~~~~~~~~~~~~L~~--Spql~lk~ll~~ 67 (280)
T cd00777 4 RSRVIKAIRNFLDEQGFVEIETPILTKSTP-EGA---------R---D-FLVPSRLHPGKFYALPQ--SPQLFKQLLMVS 67 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeecCCC-CCC---------C---C-ceeccccCCCceeeccc--CHHHHHHHHHhc
Confidence 357889999999999999999999974321 011 0 0 21111100011123554 565532 2333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. -|+|++|+|||.+ .+..|.+||+|+++-+++. ++.++...++.+++.++
T Consensus 68 g~--~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~--~~~dlm~~~e~li~~i~ 119 (280)
T cd00777 68 GF--DRYFQIARCFRDEDLRADRQPEFTQIDIEMSFV--DQEDIMSLIEGLLKYVF 119 (280)
T ss_pred Cc--CcEEEeccceeCCCCCCCccceeEEeEeeeccC--CHHHHHHHHHHHHHHHH
Confidence 32 3999999999999 5677888999999998874 78899988888886554
No 34
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=99.13 E-value=2.4e-09 Score=107.14 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee---cCCccCCCcceEeccchHHHHH--H
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI---KNRYVSNNKPLLRTHTSPMQIR--Y 183 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i---~np~~~~~~~~LRt~lsp~~l~--~ 183 (338)
...+...+|++|.+.||.||.+|.+.+.. + .++. +.|.+ ..+ ..|++| |.+.. .
T Consensus 136 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~--------~--eg~~---~~f~v~~~~~~------~yL~~S--pql~~q~l 194 (428)
T TIGR00458 136 RSGVLESVREFLAEEGFIEVHTPKLVASA--------T--EGGT---ELFPITYFERE------AFLGQS--PQLYKQQL 194 (428)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCceecCC--------C--CCCc---ceeeeEecCCc------EEECcC--HHHHHHHH
Confidence 35778899999999999999999996431 0 1111 22332 233 456554 65532 3
Q ss_pred HhcCCCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 184 SKINKPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+.... -|+|++|+|||++ .+ .+|+|||+|+++-+++. +..++...++.+++.+
T Consensus 195 i~~g~--~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~--~~~dlm~~~e~li~~i 249 (428)
T TIGR00458 195 MAAGF--ERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFE--DHHDVMDILEELVVRV 249 (428)
T ss_pred Hhccc--CcEEEEecccccCCCCCccchheeeEeeeeeccC--CHHHHHHHHHHHHHHH
Confidence 33332 3999999999999 45 47999999999998873 5567776666666544
No 35
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=99.05 E-value=8.4e-09 Score=103.50 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHH-hc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYS-KI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l-~~ 186 (338)
...+...+|++|...||.||.+|.+.+. .++ ++. +.|.+.-- + ....|++| |.+. +.+ ..
T Consensus 139 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~--------~~e--g~~---~~f~~~~~--~-~~~~L~~S--pql~~q~l~~~ 200 (437)
T PRK05159 139 RSEVLRAFREFLYENGFTEIFTPKIVAS--------GTE--GGA---ELFPIDYF--E-KEAYLAQS--PQLYKQMMVGA 200 (437)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccc--------CCC--CCc---ceEeEEec--C-CceEecCC--HHHHHHHHHhc
Confidence 3577899999999999999999998542 011 111 23433211 1 11456655 5543 222 23
Q ss_pred CCCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. -|+|++|+|||++ .+ .+|.|||+|+++.+++.+ ++.++...++.+++.++
T Consensus 201 g~--~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~-~~~~lm~~~e~lv~~i~ 254 (437)
T PRK05159 201 GF--ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID-DHEDVMDLLENLLRYMY 254 (437)
T ss_pred CC--CcEEEEeceeeCCCCCCcccchhhheeeeeeeecc-cHHHHHHHHHHHHHHHH
Confidence 22 4999999999999 45 479999999999988732 36677666666665443
No 36
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.03 E-value=1.5e-08 Score=97.83 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcccee---ecCCccCCCcceEeccchHHHH-HHH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFY---IKNRYVSNNKPLLRTHTSPMQI-RYS 184 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~---i~np~~~~~~~~LRt~lsp~~l-~~l 184 (338)
...+.+.+|++|.+.||.||.+|.++... -+. . .+.|. ...+ ..|++| |.+. +.+
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~~--~e~-------~----~~~f~~~~~~~~------~yL~~S--pql~lk~l 85 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITSTD--TEG-------G----AELFKVSYFGKP------AYLAQS--PQLYKEML 85 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecCC--CCc-------c----CCccccccCCCc------ceecCC--HHHHHHHH
Confidence 46788999999999999999999997631 111 0 11232 2233 456655 5442 223
Q ss_pred hcCCCCceEEEeeeEEEeCC-C-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 185 KINKPPIKVITSGRVYRIDS-D-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d~-d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
... --|||++|+|||++. + .+|.+||+|+++-.++.+ ++.++...++.+++.++
T Consensus 86 ~~~--~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~-~~~dlm~~~e~ll~~~~ 141 (322)
T cd00776 86 IAA--LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIE-DYNEVMDLIEELIKYIF 141 (322)
T ss_pred HHh--hhhhEEeccccccCCCCcCCCcceeeccceeeeccC-CHHHHHHHHHHHHHHHH
Confidence 222 349999999999994 4 589999999999988731 67777777776665443
No 37
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.00 E-value=2.3e-08 Score=91.38 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc--cCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY--VSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~--~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
...+.+.+++.|...||+++.+|.+++. ..|.+-+ |...-..+.+.+..+. ...+..+||+.+.+...+...+
T Consensus 5 ~~~l~~~~~~~~~~~G~~ei~~P~l~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 5 WRALERFLDDRMAEYGYQEILFPFLAPT-VLFFKGG----HLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEcCH-HHHhhcC----CcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 4678899999999999999999999765 3455433 2211122345554431 0034479999999999887754
Q ss_pred -----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccCCCeeEEEc--
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFESDNIQIRFR-- 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~-- 251 (338)
...|+|++.+|+|||.+. . .....+|+|.++-+.|.. ..+.++......+++.+ |. ...+...
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~l-gl-~~~i~~~~~ 157 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL-GL-PVRVVVADD 157 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEccC
Confidence 246999999999999984 3 345679999999999864 23567888888888888 85 3333332
Q ss_pred cCCC--------CCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC--C----CCCeEEEEEeechhHHHHH
Q psy9576 252 PSYF--------PFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL--D----PEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 252 ps~f--------pf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi--~----~~~~~~~afelglerlam~ 316 (338)
+.+. .+..|..++.+.... .++|.+|++++.-.-.-.....+ + .....+..+.+++||++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~e~~~~~---~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eR~l~a 233 (235)
T cd00670 158 PFFGRGGKRGLDAGRETVVEFELLLPL---PGRAKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGAGGEERLVLA 233 (235)
T ss_pred hhhccCCccccccccCCceEEEEEecC---CCCceeeeEEEeecchhhhhccEEEccCCCceeeEEEeCccHHHHHHHH
Confidence 2233 577788777776511 13577888777665444332111 0 0113445666899998765
No 38
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.91 E-value=2.6e-07 Score=86.39 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+++.+|.+++. ..+..-+-+ ..+ .+.|.+.++ +.+..+||+.++|...|.+.++
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~-~~~~~~~~~---~~~--~~~~~~~d~--~g~~l~LRpd~T~~iaR~~a~~~ 76 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYT-ELFLRKSGD---EVS--KEMYRFKDK--GGRDLALRPDLTAPVARAVAENL 76 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeH-HHhcccccc---ccc--ceEEEEECC--CCCEEEeCCCCcHHHHHHHHhcC
Confidence 4678899999999999999999999764 334332211 111 356777655 3455899999999999987653
Q ss_pred ---CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHH--HHHHHHHHHHHh---------------------
Q psy9576 188 ---KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSD--LKGVYLNFIRVF--------------------- 240 (338)
Q Consensus 188 ---~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~d--LKg~l~~ll~~l--------------------- 240 (338)
..|+|++++|+|||.+ ....+..+|+|+.+=+.|.+....| +-.++..+++.+
T Consensus 77 ~~~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i~~~l~~~ 156 (261)
T cd00773 77 LSLPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLKDFQIKINHRGILDGIAGL 156 (261)
T ss_pred ccCCCCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHhhc
Confidence 3699999999999998 4567888999999878774322111 222222222222
Q ss_pred --------------------------------ccCCCeeEEEccCCCC--CCCCceEEEEEeecCCCCCCCeeEeeeeec
Q psy9576 241 --------------------------------FESDNIQIRFRPSYFP--FTEPSAEIDIVFQDGPLKGNWLEISGAGQV 286 (338)
Q Consensus 241 --------------------------------fg~~~~~~r~~ps~fp--f~~Ps~e~~i~~~~g~~~~gwieig~~G~v 286 (338)
+|. ...+.+.++..+ ...-|.-..+++ .+. +.+ -.|++-|.-
T Consensus 157 ~~~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~-~~~i~~d~~~~r~~~YYtG~vF~~~~-~~~-~~~-~~i~~GGRY 232 (261)
T cd00773 157 LEDREEYIERLIDKLDKEALAHLEKLLDYLEALGV-DIKYSIDLSLVRGLDYYTGIVFEAVA-DGL-GAQ-GSIAGGGRY 232 (261)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CceEEEcCccccCCcccCceEEEEEE-CCC-Ccc-CeEeeccCH
Confidence 132 234666666332 111243344444 111 112 268888888
Q ss_pred CHHHhhhC-CCCCCCeEEEEEeechhHHHHH
Q psy9576 287 NPKVLCNM-NLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 287 hP~Vl~~~-gi~~~~~~~~afelglerlam~ 316 (338)
.- .+..+ |-+ .|++.|.+++|||..+
T Consensus 233 D~-L~~~f~~~~---~~avGfa~~~d~l~~~ 259 (261)
T cd00773 233 DG-LLEEFGGED---VPAVGFAIGLERLLLA 259 (261)
T ss_pred HH-HHHHhCCCC---CCeEEEEEcHHHHHHh
Confidence 74 55554 443 6899999999999865
No 39
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.85 E-value=1.9e-08 Score=99.91 Aligned_cols=135 Identities=13% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHH
Q psy9576 102 NKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180 (338)
Q Consensus 102 ~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~ 180 (338)
.+...+....+.+.++++|...||+++.+|.++.. ..|..- +...+|+.. +.|.+.++ +.+..+||+.+++..
T Consensus 14 ~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~-~~~~~~~g~~~~~~~~---~~~~~~d~--~g~~l~LRpd~T~~~ 87 (412)
T PRK00037 14 LPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYT-ELFKRKVGEETDIVEK---EMYTFQDK--GGRSLTLRPEGTAPV 87 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchH-HHhccccCcccccccc---eeEEEEcC--CCCEEEecCCCcHHH
Confidence 44556778899999999999999999999999653 334321 111112222 45666555 345679999999999
Q ss_pred HHHHhcC-CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 181 IRYSKIN-KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 181 l~~l~~~-~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
++.+.++ ..|+|+|++|+|||.+ ....+..+|+|.++-++|.+... .++-.++..+++.+ |.
T Consensus 88 ar~~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~l-g~ 153 (412)
T PRK00037 88 VRAVIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKAL-GL 153 (412)
T ss_pred HHHHHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHc-CC
Confidence 9988654 3799999999999998 46678899999999999865333 55666677777776 64
No 40
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=98.82 E-value=2.3e-08 Score=103.09 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCC--CCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPK--NHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~--~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
..++...||++|...||.||.+|.+.+... .+--.|- .|. +++.+ ..||++.--.+-+.+..
T Consensus 256 RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G--GA~a~PF~T~~n--------~~d~~------lYLriSpEL~lKrLlvg 319 (585)
T PTZ00417 256 RTKIINYLRNFLNDRGFIEVETPTMNLVAG--GANARPFITHHN--------DLDLD------LYLRIATELPLKMLIVG 319 (585)
T ss_pred HHHHHHHHHHHHHHCCeEEEeCCeeeccCC--cccceeEEeccc--------CCCcc------eEEeecHHHHHHHHHHh
Confidence 346788999999999999999999976421 1110010 010 11222 47887744444444443
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+- -||||+|+|||++ .+.+|.|||+|+++..++ .++.|+...++.+++.+
T Consensus 320 G~--~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay--~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 320 GI--DKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAY--ADFYDLIKWSEDFFSQL 370 (585)
T ss_pred CC--CCEEEEcccccCCCCCCCccceeeeeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 33 3999999999999 589999999999999987 58889887777776544
No 41
>PLN02850 aspartate-tRNA ligase
Probab=98.81 E-value=6.9e-08 Score=98.87 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH--HhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY--SKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~--l~~~ 187 (338)
..+.+.+|++|.+.||.||.+|.+.+.. ++.+ .+.|.+.-. + ....|++ ||.+..- +...
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~--------~egg-----a~~F~v~yf--~-~~~~L~q--Spql~kq~li~~g 290 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGA--------SEGG-----SAVFRLDYK--G-QPACLAQ--SPQLHKQMAICGD 290 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCC--------Cccc-----cceeeeccC--C-cceecCC--CHHHHHHHHHHhc
Confidence 3678899999999999999999985431 1110 122444321 1 1145654 4665432 2222
Q ss_pred CCCceEEEeeeEEEeCC--CCCCCcceeEEEEEE
Q psy9576 188 KPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLW 219 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~--d~th~~~f~ql~~l~ 219 (338)
. -|+|++|+|||.+. +..|++||+|+++-+
T Consensus 291 ~--~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em 322 (530)
T PLN02850 291 F--RRVFEIGPVFRAEDSFTHRHLCEFTGLDLEM 322 (530)
T ss_pred C--CceEEEecccccCCCCCCccchhhccchhhh
Confidence 2 39999999999993 578999999998764
No 42
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.80 E-value=6.8e-08 Score=95.59 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=97.9
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCC-CCCCCcCccceeecCCccCCCcceEeccchHHHH
Q psy9576 103 KGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPK-NHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI 181 (338)
Q Consensus 103 ~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~-~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l 181 (338)
+...+..+++.+.++++|...||+++.+|.++.. ..|..-.-+. +++. .++|.+... +.+..+||+.+++...
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~-~~~~~~~g~~~~~~~---~~~~~~~d~--~g~~l~LRpD~T~~ia 84 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYT-ELFARKVGEETDIVE---KEMYTFKDK--GGRSLTLRPEGTAPVA 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchH-HHhhhccCccccccc---cceEEEECC--CCCEEeecCCCcHHHH
Confidence 3456778899999999999999999999999764 3443322111 1122 234666554 2456799999999999
Q ss_pred HHHhcC----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHH--HHHHHHHHHHHHhccC
Q psy9576 182 RYSKIN----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFS--DLKGVYLNFIRVFFES 243 (338)
Q Consensus 182 ~~l~~~----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~--dLKg~l~~ll~~lfg~ 243 (338)
|.+.++ ..|.|+|++|+|||.+ .+..+..+|+|+++-++|.+.... ++-.++..+++.+ |.
T Consensus 85 R~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~l-g~ 152 (397)
T TIGR00442 85 RAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKEL-GI 152 (397)
T ss_pred HHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHc-CC
Confidence 987542 3589999999999988 466788999999999988654333 5666777777776 65
No 43
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=98.79 E-value=3.1e-08 Score=101.58 Aligned_cols=110 Identities=14% Similarity=0.182 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+...+|++|.+.||.||.+|.+....- +. - .+.|.+.-. + ....|+ .||.+..-|.-..
T Consensus 216 rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~--------eg-g----a~~F~v~yf--~-~~~~L~--qSpql~kq~li~~ 277 (550)
T PTZ00401 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPS--------EG-G----ANVFKLEYF--N-RFAYLA--QSPQLYKQMVLQG 277 (550)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCC--------Cc-c----ccccccccC--C-CCeecC--CCHHHHHHHHHhc
Confidence 347889999999999999999999865310 00 0 122322211 1 113554 4566654432211
Q ss_pred CCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEE-cCCCCHHHHHHHHHHHHH
Q psy9576 189 PPIKVITSGRVYRID-SD-STHSPMFHQIEGLWI-DKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~-g~~~~f~dLKg~l~~ll~ 238 (338)
.--|+|++|+|||.+ .+ ..|++||+||++-+. + .++.++..+++.++.
T Consensus 278 g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~--~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 278 DVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRIN--EHYYEVLDLAESLFN 328 (550)
T ss_pred CCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhc--CCHHHHHHHHHHHHH
Confidence 124999999999999 43 689999999998433 2 234455555554444
No 44
>PLN02603 asparaginyl-tRNA synthetase
Probab=98.72 E-value=3.4e-07 Score=94.14 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhh--hhhc------------------CCCCCCCC-Cc-CccceeecCCccCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNN--FTAL------------------NSPKNHPA-RS-MHDTFYIKNRYVSN 167 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~n--f~~L------------------~~p~~hpa-r~-~~dt~~i~np~~~~ 167 (338)
..+...+|++|...||.||.+|.|++..-. -+.. .+|..++. .+ .+| |...+
T Consensus 230 S~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d--yF~~~---- 303 (565)
T PLN02603 230 NALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD--FFGKP---- 303 (565)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchh--hhCcc----
Confidence 456788999999999999999999764210 0101 11111000 00 001 11122
Q ss_pred CcceEeccchHHH-HHHHhcCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHH
Q psy9576 168 NKPLLRTHTSPMQ-IRYSKINKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236 (338)
Q Consensus 168 ~~~~LRt~lsp~~-l~~l~~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~l 236 (338)
..|+.| |.+ ++.+...- -|+|++|+|||.+ + ..+|++||+|++.-++. +++.|+..+++.+
T Consensus 304 --~~LtvS--~QL~~E~~~~~l--~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af--~dl~d~m~~~E~~ 367 (565)
T PLN02603 304 --AFLTVS--GQLNGETYATAL--SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLNDDMACATAY 367 (565)
T ss_pred --eeeccC--chHHHHHHHhcc--cceEEEecceeCCCCCCccccccceeeeeeeec--CCHHHHHHHHHHH
Confidence 344443 322 23333322 3899999999999 4 36999999999987765 3455555444433
No 45
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=98.71 E-value=9.3e-08 Score=97.43 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee-cCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI-KNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i-~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.++...||++|.+.||.||.+|.+.+... .+ + ++ .|.. .|- . .....||+|.--.+-+.+...-
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~~g--Ga-~------a~----pF~t~~~~-~-~~~~yL~~SpELylKrlivgG~ 252 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVIPG--GA-S------AR----PFITHHNA-L-DLDMYLRIAPELYLKRLVVGGF 252 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEecCC--CC-c------cc----ceeccccc-C-CcceeeecCHHHHHHHHHhccC
Confidence 46788999999999999999999965311 11 0 01 1210 011 0 1114687763222223343333
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-|+||+|+|||++ .+.+|.|||+|+++.+++ .++.|+...++.+++.+
T Consensus 253 --~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 253 --ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 301 (505)
T ss_pred --CcEEEEehhccCCCCCCCcCcccceeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 3999999999999 589999999999999987 47889888888888765
No 46
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.9e-08 Score=100.11 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++++.||++|...||.||.+|.+.+..---.+-.+-..|.+-++ + ..||-..=-.+-|.+-.+-
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~--------d------lyLRIApELyLKRliVGG~ 248 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDM--------D------LYLRIAPELYLKRLIVGGF 248 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCC--------c------eEEeeccHHHHHHHHhcCc
Confidence 3578899999999999999999999765443333333333433322 1 5788775555555554433
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH----HHhccCCCeeEEE
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI----RVFFESDNIQIRF 250 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll----~~lfg~~~~~~r~ 250 (338)
. |+||+|++||++ .|.||.|+|.+++...+. +++.|+....+.++ ..+.| ..++.|
T Consensus 249 e--rVfEIgr~FRNEGid~tHNPEFTmlE~Y~AY--aDy~D~m~ltE~Li~~~a~~v~g--t~~v~y 309 (502)
T COG1190 249 E--RVFEIGRNFRNEGIDTTHNPEFTMLEFYQAY--ADYEDLMDLTEELIKELAKEVNG--TTKVTY 309 (502)
T ss_pred h--hheeeccccccCCCccccCcchhhHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcC--CeEEEE
Confidence 2 999999999999 599999999999988875 56677766655555 45555 244444
No 47
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=98.69 E-value=6e-08 Score=98.67 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~ 186 (338)
...+...||++|.+.||.||.+|.+.+... .+ - .+.|.+..... .....||+| |.+. +.+..
T Consensus 175 Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~g--ga-------~----a~pF~t~~~~~-~~~~yLriS--pELylKrlivg 238 (496)
T TIGR00499 175 RSKIIKAIRRFLDDRGFIEVETPMLQVIPG--GA-------N----ARPFITHHNAL-DMDLYLRIA--PELYLKRLIVG 238 (496)
T ss_pred HHHHHHHHHHHHHHCcCEEEeCCeeecCCC--Cc-------c----ceeEEeecccC-CCceEEecC--HHHHHHHHHhC
Confidence 346788999999999999999999975421 11 0 11132211100 112568877 5442 33333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+- -||||+|+|||++ .+.+|.|||+++++..+. .++.|+...++.+++.+
T Consensus 239 G~--~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 239 GF--EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAY--ADYEDLMDLTENLFKFL 289 (496)
T ss_pred CC--CceEEEecceecCCCCCcccchhheeehhhhc--CCHHHHHHHHHHHHHHH
Confidence 33 3999999999999 589999999999998876 47888888888777654
No 48
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.68 E-value=6.6e-08 Score=92.76 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+.+.||++|.+.||.||.+|.++.. .++++...| -. .+.+..+.. .....+||||.-..+-+.+....
T Consensus 8 r~~i~~~ir~~f~~~gf~EV~TP~l~~~-~~~~~~~~~----f~--~~y~~~~~~--~~~~~~L~~SPe~~~kr~la~~~ 78 (306)
T PRK09350 8 RAKIIAEIRRFFADRGVLEVETPILSQA-TVTDIHLVP----FE--TRFVGPGAS--QGKTLWLMTSPEYHMKRLLAAGS 78 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecc-cCCCccCCc----ee--eeecccccc--CCcceEEecCHHHHHHHHhhccc
Confidence 3578899999999999999999999642 233332211 10 111111100 12235788763333334454432
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
-|+|++|+|||.+ .+..|.+||+|+++..++ .++.|+...++.++..++.
T Consensus 79 --~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~--~d~~dlm~~~E~li~~i~~ 129 (306)
T PRK09350 79 --GPIFQICKSFRNEEAGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQVLD 129 (306)
T ss_pred --cceEEecceeecCCCCCCCCcHHHhhhhhhhC--CCHHHHHHHHHHHHHHHHh
Confidence 3999999999999 588999999999997776 5788888888888876654
No 49
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=98.65 E-value=2.1e-07 Score=94.61 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~ 186 (338)
..++...||++|.+.||.||.+|.+.+... ...+ +.|....... .....||+| |.+. +.|..
T Consensus 175 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---------Ga~a----~pF~t~~~~~-~~~~yL~~S--pql~lk~l~v~ 238 (491)
T PRK00484 175 RSKIISAIRRFLDNRGFLEVETPMLQPIAG---------GAAA----RPFITHHNAL-DIDLYLRIA--PELYLKRLIVG 238 (491)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeccCC---------Cccc----eeeeeccccC-CCceEeccC--HHHHHHHHHhc
Confidence 356788999999999999999999965321 1001 1121110100 111457765 5543 33333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+- -|+|++|+|||++ .+.+|.|||+|+++.++. .++.|+...++.+++.+
T Consensus 239 g~--~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~--~d~~d~m~~~E~li~~i 289 (491)
T PRK00484 239 GF--ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAY--ADYNDMMDLTEELIRHL 289 (491)
T ss_pred cC--CcEEEEecceecCCCCCCcCCceEEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 32 4999999999999 588999999999998886 48889988888888755
No 50
>PLN02502 lysyl-tRNA synthetase
Probab=98.64 E-value=1.1e-07 Score=97.65 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
..+...||++|.+.||.||.+|.+.+... .+ -++ .|..-.... .....||+|.--.+-+.+...-
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~~g--GA-------~a~----pF~t~~n~~-~~~~yL~~Spel~lK~L~v~g~- 297 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMIAG--GA-------AAR----PFVTHHNDL-NMDLYLRIATELHLKRLVVGGF- 297 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeeccCC--Cc-------ccc----ceeeecccC-CcceeeecCHHHHHHHHHHhcc-
Confidence 45678999999999999999999975421 11 001 121110100 1225777763333323343333
Q ss_pred CceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 190 PIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 190 pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|||++|+|||++ .+.+|.|||+|+++.++. .++.|+..+++.+++.++
T Consensus 298 -~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~--~d~~dlm~~~E~li~~i~ 347 (553)
T PLN02502 298 -ERVYEIGRQFRNEGISTRHNPEFTTCEFYQAY--ADYNDMMELTEEMVSGMV 347 (553)
T ss_pred -CCEEEEcCeeeCCCCCCccccceeehhhhhhc--CCHHHHHHHHHHHHHHHH
Confidence 3999999999999 588999999999998886 478888888888776553
No 51
>PLN02532 asparagine-tRNA synthetase
Probab=98.64 E-value=8.1e-07 Score=92.03 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=35.1
Q ss_pred ceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 191 IKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 191 irifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
-|+|++|++||.+ .+ .+|++||+|+++-++.. ++.|+..+++.++
T Consensus 390 ~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~--d~~dvM~l~E~lI 436 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFS--ELEDAMNCAEDYF 436 (633)
T ss_pred CceEEEccceecCCCCCCcccccccceeeeehhc--CHHHHHHHHHHHH
Confidence 3999999999999 44 79999999999987753 4566665555554
No 52
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=98.64 E-value=1.7e-07 Score=97.31 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+++...||++|.+.||.||.+|.+.+... ..-|+ .|.+..... .....||+|.--.+-+.+...-
T Consensus 236 Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~---------ga~a~----pF~t~~n~~-~~~~yL~~SPELylKrLivgG~ 301 (659)
T PTZ00385 236 RHVMLQALRDYFNERNFVEVETPVLHTVAS---------GANAK----SFVTHHNAN-AMDLFLRVAPELHLKQCIVGGM 301 (659)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCEeeccCC---------CCCcc----ceEeecccC-CCCEEecCChHHHHHHHhhccc
Confidence 457889999999999999999999954311 10111 122211000 1114677663333333443333
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-|+||+|+|||++ .+.+|.|||+|+++..++ .++.++...++.+++.+
T Consensus 302 --erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 302 --ERIYEIGKVFRNEDADRSHNPEFTSCEFYAAY--HTYEDLMPMTEDIFRQL 350 (659)
T ss_pred --CCEEEEeceecCCCCCCCccccccceeeeeec--CCHHHHHHHHHHHHHHH
Confidence 3999999999999 589999999999999876 58899999999888766
No 53
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.61 E-value=3.9e-07 Score=88.35 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec---CCccCCCcceEeccchHHHHHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK---NRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~---np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
...+.+.||++|...||.||.+|.++.... +. ..+.|.+. +... .....|++|.--.+-..+.
T Consensus 25 rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~-----~~~~F~v~~~~~~~~-~~~~~L~~Spql~~k~ll~ 90 (335)
T PF00152_consen 25 RSAILQAIREFFDKRGFIEVDTPILTSSTC--------EG-----GAEPFSVDSEPGKYF-GEPAYLTQSPQLYLKRLLA 90 (335)
T ss_dssp HHHHHHHHHHHHHHTT-EEE---SEESSSS--------SS-----SSCSEEEEESTTEET-TEEEEE-SSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEcCceeecccc--------Cc-----cccccccccchhhhc-ccceecCcChHHHHhhhcc
Confidence 367889999999999999999999976421 11 12446665 1110 1123455553333333444
Q ss_pred cCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 186 INKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.+- -|||++|+|||.+ . +.+|+|||+|+++..++ +++.++...++.+++.++
T Consensus 91 ~g~--~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~--~~~~~lm~~~e~li~~i~ 144 (335)
T PF00152_consen 91 AGL--ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF--ADYDDLMDLIEELIKYIF 144 (335)
T ss_dssp TTH--SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET--SSHHHHHHHHHHHHHHHH
T ss_pred ccc--hhhhheecceeccCcccccchhhhhhhhhcccc--CcHHHhHHHHHHHHHHHH
Confidence 432 3999999999999 5 89999999999999986 677777777777776654
No 54
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.7e-07 Score=85.89 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH--HHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ--IRYS 184 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~--l~~l 184 (338)
-....+++.||.+|...||.||.+|.+... -+ ++.|-.. -.|-++... .++-..|--||||.. -+.+
T Consensus 17 l~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a-~v------td~hL~~--F~Te~~~~~--~~~~~~l~L~TSPEy~mKrLL 85 (322)
T COG2269 17 LKRAAIIAAIRRFFAERGVLEVETPALSVA-PV------TDIHLHP--FETEFLGPG--GAKGKPLWLHTSPEYHMKRLL 85 (322)
T ss_pred HHHHHHHHHHHHHHHHcCceEecchHhhcC-CC------Cccceee--eeeEEeccC--ccccceeeeecCcHHHHHHHH
Confidence 345688999999999999999999988432 22 2223211 123344433 222345566666654 4555
Q ss_pred hcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcC
Q psy9576 185 KINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDK 222 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~ 222 (338)
+.... +||.+|+|||+. ..+.|.|+|+|++++.+|-
T Consensus 86 Aag~~--~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~ 122 (322)
T COG2269 86 AAGSG--PIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGC 122 (322)
T ss_pred HccCC--cchhhhHHHhcccccccCCCceeEeeeeccCC
Confidence 55443 789999999999 4899999999999999883
No 55
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.52 E-value=1.7e-06 Score=75.88 Aligned_cols=132 Identities=18% Similarity=0.193 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHh-hCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 110 MRTLERIEKIFY-SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~-~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
+.+.+.+++.+. ..||+++.+|.+.+.. .+..-+ |-..-..+.|.+.+. +.+..+||+.+-|++...++.
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~-~~~~sg----~~~~~~~~~~~~~~~--~~~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSE-VWEKSG----HWDNFSDEMFKVKDR--GDEEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHH-HHHHHS----HHHHHGGGSEEEEET--TTEEEEE-SSSHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehH-Hhhhcc----ccccccCCeeeeeec--ccccEEeccccccceeeeeccee
Confidence 568889999999 9999999999998753 344322 110111234666654 234479999999999887743
Q ss_pred ----CCCCceEEEeeeEEEeC-C---CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 ----NKPPIKVITSGRVYRID-S---DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d-~---d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
...|++++++|+|||++ . ......+|+|.++.+.+.. -.+..+......+++.+ |. ..++++
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~l-gl--~~~~~~ 149 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKL-GL--EPYRIV 149 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHT-TS--GCEEEE
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHc-CC--ceEEEE
Confidence 24799999999999999 3 3577889999999999876 45777888888888887 84 244444
No 56
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=98.50 E-value=8.4e-06 Score=84.09 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=34.1
Q ss_pred ceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH
Q psy9576 191 IKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 191 irifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~ 238 (338)
-|+|++|+|||.+ . ...|++||+|+++-++.. +..++..+++.+++
T Consensus 344 ~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~--d~~d~m~~~E~li~ 391 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFA--DLYDNMELAESYIK 391 (586)
T ss_pred CCEEEEeceEeCCCCCCCCCCcccceEEEEEecC--CHHHHHHHHHHHHH
Confidence 3999999999999 4 479999999999987752 44555554444443
No 57
>PLN02678 seryl-tRNA synthetase
Probab=98.50 E-value=3.7e-05 Score=77.28 Aligned_cols=177 Identities=9% Similarity=0.044 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc---chHHHHHH-Hh
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH---TSPMQIRY-SK 185 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~---lsp~~l~~-l~ 185 (338)
..+.+.+++.+...||++|.+|.+.... .+.+-+.++ .-..|.|.|.+. +++..++.|+ +.|..... ++
T Consensus 178 ~AL~~y~ld~~~~~Gy~~V~~P~lv~~~-~~~~sG~~~----~f~e~my~i~~~--~~~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 178 QALINFGLAFLRKRGYTPLQTPFFMRKD-VMAKCAQLA----QFDEELYKVTGE--GDDKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHcCCEEEECcccccHH-HHhhcCCcc----cchhcCceecCC--CCceeeecccccccChHHhcccCC
Confidence 3456667777888899999999997753 444433332 222355777543 2455688875 55544322 22
Q ss_pred cCCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC--C----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 186 INKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK--N----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~--~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
....|+|+++.|+|||++.. -...++|++++.++.-. . ..+.++....+.+++.| |+ ...+-.-
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L-~l-pyrvv~~ 328 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSL-GI-PYQVVSI 328 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHc-CC-CeEEEee
Confidence 34579999999999999842 24456899999987722 1 34677888888999887 85 2222222
Q ss_pred cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 252 PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
|+..=..-++...||.++-.. ..+|.||.-|.-.--=-.+.++|
T Consensus 329 ~sgdlg~~a~~~yDiE~W~P~-~~~y~EvsS~Snc~D~QaRRl~i 372 (448)
T PLN02678 329 VSGALNDAAAKKYDLEAWFPA-SKTYRELVSCSNCTDYQSRRLEI 372 (448)
T ss_pred cccccCCchhhceeeEeeccc-cCCceEEeeecccccHhhhcccc
Confidence 332222223334455444111 34687877776444333334444
No 58
>KOG1885|consensus
Probab=98.46 E-value=7.1e-08 Score=94.75 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..+++..||.+|-+.||.||.+|.+.....--.|-.+-..|..-+| -..||-..=-.+-+.+-.+
T Consensus 228 RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm--------------~LylRiAPEL~lK~LvVGG- 292 (560)
T KOG1885|consen 228 RAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDM--------------DLYLRIAPELYLKMLVVGG- 292 (560)
T ss_pred HHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCc--------------ceeeeechHHHHHHHHhcc-
Confidence 3578889999999999999999998543222222111112211111 1567765322222222222
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH----HhccCCCeeEEEccCCCCCCCCceE
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR----VFFESDNIQIRFRPSYFPFTEPSAE 263 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~----~lfg~~~~~~r~~ps~fpf~~Ps~e 263 (338)
=-|+||||++||++ .|.||.|+|..++++.+. .++.|+..+-+.+++ .+.| ..++.|.|. +.++|..|
T Consensus 293 -ldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AY--ady~dlm~~TE~l~s~mv~~i~G--~~~i~y~p~--~~~~~~~e 365 (560)
T KOG1885|consen 293 -LDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYEDLMDMTEELLSGMVKNITG--SYKITYHPN--GPEEPELE 365 (560)
T ss_pred -HHHHHHHHHHhhhcCcccccCCCcchHHHHHHH--hhHHHHHHHHHHHHHHHHHhhcC--ceeEeecCC--CCCCCcee
Confidence 23899999999999 699999999999988765 567888877666664 4445 355544442 14455677
Q ss_pred EEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC
Q psy9576 264 IDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297 (338)
Q Consensus 264 ~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~ 297 (338)
++. .-.|-.| ..+|.+-+.+|++
T Consensus 366 ldf-------~~pfrri----~mi~~L~k~lgi~ 388 (560)
T KOG1885|consen 366 LDF-------TRPFRRI----EMIEELEKELGIK 388 (560)
T ss_pred eec-------cCCeeee----eHHHHHHHHhCCC
Confidence 775 2356433 4567777888886
No 59
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=98.44 E-value=5.3e-07 Score=99.34 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
.++...||++|.+.||.||.+|.+.+..- ++ -+ +.|...-...+. ...||++.--.+-+.+...-
T Consensus 774 s~i~~~iR~fl~~~gFlEVeTPiL~~~~g--Ga-------~a----~pF~t~~~~~~~-~~yLriSPELylKrLivgG~- 838 (1094)
T PRK02983 774 SAVVRAVRETLVARGFLEVETPILQQVHG--GA-------NA----RPFVTHINAYDM-DLYLRIAPELYLKRLCVGGV- 838 (1094)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEeeccCC--Cc-------cc----ceeEeeecCCCc-cchhhcChHHHHHHHHhccc-
Confidence 46788999999999999999999974321 11 01 123111001111 14677663222223333333
Q ss_pred CceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 190 PIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 190 pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-|+||+|+|||++ .+.+|.|||+|+|+..+. .++.|+...++.+++.+
T Consensus 839 -erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~--~dy~d~m~l~E~li~~i 887 (1094)
T PRK02983 839 -ERVFELGRNFRNEGVDATHNPEFTLLEAYQAH--ADYDTMRDLTRELIQNA 887 (1094)
T ss_pred -CceEEEcceecCCCCCCCccccccchhhhhhc--CCHHHHHHHHHHHHHHH
Confidence 3999999999999 589999999999998876 58899998888888655
No 60
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.41 E-value=7.2e-06 Score=76.67 Aligned_cols=194 Identities=12% Similarity=0.078 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH----HH
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI----RY 183 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l----~~ 183 (338)
-...+.+.+++.+...||+++.+|.+++. ..|..= .|-..-..+.|.+.+. +.+..+||+..-+.+. +.
T Consensus 33 l~~~i~~~~~~~~~~~G~~ei~~P~l~~~-~~~~~s----g~~~~~~~emy~~~d~--~~~~l~LrPt~e~~~t~~~~~~ 105 (255)
T cd00779 33 VLKKIENIIREEMNKIGAQEILMPILQPA-ELWKES----GRWDAYGPELLRLKDR--HGKEFLLGPTHEEVITDLVANE 105 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHHhc----CCccccCcccEEEecC--CCCeEEEecCCcHHHHHHHHhc
Confidence 45788888999999999999999999765 344331 2222222355777543 2344689988333333 22
Q ss_pred Hh-cCCCCceEEEeeeEEEeC-CCCC---CCcceeEEEEEEEcCCC-----CHHHHHHHHHHHHHHhccCCCeeEEEc-c
Q psy9576 184 SK-INKPPIKVITSGRVYRID-SDST---HSPMFHQIEGLWIDKNI-----SFSDLKGVYLNFIRVFFESDNIQIRFR-P 252 (338)
Q Consensus 184 l~-~~~~pirifeiG~Vyr~d-~d~t---h~~~f~ql~~l~~g~~~-----~f~dLKg~l~~ll~~lfg~~~~~~r~~-p 252 (338)
+. .+..|+|++.+|+|||.+ .+.. ...+|+|.++...+.+- .+..+..+...+++.+ |+ ...+... .
T Consensus 106 i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~L-gl-~~~~~~~~~ 183 (255)
T cd00779 106 IKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRL-GL-PFVKVEADS 183 (255)
T ss_pred cccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEecC
Confidence 22 235699999999999998 5432 57899999998887532 3346667778888888 86 2221111 2
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCC---C-----CeEEEEEeechhHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP---E-----KYIGFAFGSGLERLT 314 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~---~-----~~~~~afelglerla 314 (338)
..+.+ .-+.+.++.++- . ..+++|||-|--+.-.--+.++|.- + -+. -++||++.|+.
T Consensus 184 ~~~gg-~~s~~~~~e~~~-~-~~~~~e~~s~~~lg~~~sr~~~i~~~~~~~~~~~~~~-~~~gi~~~R~l 249 (255)
T cd00779 184 GAIGG-SLSHEFHVLSPL-K-ITKGIEVGHIFQLGTKYSKALGATFLDENGKPKPLEM-GCYGIGVSRLL 249 (255)
T ss_pred CCCCC-cccEEEEEEEec-C-CCCeEEEEeeeecchhHHHhcCcEEECCCCCEEeeEe-cCccchHHHHH
Confidence 34444 233455554430 1 2247899999888887778888741 1 012 46778888875
No 61
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=98.38 E-value=6.3e-06 Score=82.72 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHH-h
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS-K 185 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l-~ 185 (338)
....+.+.++++|...||+++.+|.++.. ..|.. .+-..++.. .+.|.+... +.+..+||+-++|..+|+. +
T Consensus 20 ~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~-e~~~~~~G~~~~~~~---~~my~~~d~--~g~~l~LRpd~T~~iaR~~~~ 93 (430)
T CHL00201 20 YWQFIHDKALTLLSLANYSEIRTPIFENS-SLYDRGIGETTDIVN---KEMYRFTDR--SNRDITLRPEGTAGIVRAFIE 93 (430)
T ss_pred HHHHHHHHHHHHHHHcCCeeecCcccchH-HHHhcccCCcccccc---cceEEEEcC--CCCEEEeCCCCcHHHHHHHHH
Confidence 45788899999999999999999999764 33432 221112222 245766554 2345799999999999975 3
Q ss_pred c----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 I----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
+ ..+|+|++++|+|||.+ .......+|+|+.+=+.|...-. .++-.++...++.+ |.
T Consensus 94 ~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~l-Gl 157 (430)
T CHL00201 94 NKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNEL-QV 157 (430)
T ss_pred ccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHc-CC
Confidence 2 13689999999999998 44567789999998888754322 45667777777777 75
No 62
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.36 E-value=3.6e-06 Score=86.99 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~ 186 (338)
..++...+|++|...||.||.+|.+.... |+. ||+ |.+.......+...|| .||.+.. .|..
T Consensus 141 Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~--------~eG--ar~----f~vp~~~~~~~~y~L~--qSpQlykq~l~v~ 204 (583)
T TIGR00459 141 RHKVTKAVRNFLDQQGFLEIETPMLTKST--------PEG--ARD----YLVPSRVHKGEFYALP--QSPQLFKQLLMVS 204 (583)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeccCC--------CCC--Ccc----eeeeeecCCCceeecC--CCHHHHHHHHHhc
Confidence 45788999999999999999999997421 111 121 1110000011223355 4466643 3334
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.- -|+|++|+|||.+ .+.+|.|||+|+++-++. +++.|+..+++.+++.++
T Consensus 205 G~--ervfqI~~~FR~E~~~t~r~pEFT~le~E~af--~d~~dvm~~~E~li~~v~ 256 (583)
T TIGR00459 205 GV--DRYYQIARCFRDEDLRADRQPEFTQIDMEMSF--MTQEDVMELIEKLVSHVF 256 (583)
T ss_pred cc--CcEEEEcceeeCCCCCCCCCcccCcceeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 3999999999999 567788999999999887 478999999988887665
No 63
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=98.36 E-value=0.00025 Score=70.99 Aligned_cols=192 Identities=11% Similarity=0.080 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+-+++.+...||+++.+|.+.+.. .+..-+..+. -..+.|.|.+. + .+||++--..+......
T Consensus 177 ~aL~~~~~~~~~~~G~~~v~~P~lv~~~-~~~~~G~~~~----f~~~~y~i~~~----~-~~L~pTsE~~~~~~~~~~i~ 246 (418)
T TIGR00414 177 RALINFMLDLLEKNGYQEIYPPYLVNEE-SLDGTGQLPK----FEEDIFKLEDT----D-LYLIPTAEVPLTNLHRNEIL 246 (418)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccccHH-HHhhcCcccc----ccccceEecCC----C-EEEEeCCcHHHHHHHhCcCC
Confidence 4556667888888999999999997764 4444433221 11244666543 2 57887743333322222
Q ss_pred --CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 187 --NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
...|+|++++|+|||++.. -...++|++.++.+... ...+..+....+.+++.| |. ...+-..+
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~L-gl-p~r~v~~~ 324 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQEL-EL-PYRVVNLC 324 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC-ceEEEecC
Confidence 3469999999999999842 23467899999866642 245777888888899887 85 22221223
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C--C--Ce--EEEEEeechhHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P--E--KY--IGFAFGSGLERLT 314 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~--~--~~--~~~afelglerla 314 (338)
+..-+...+.+.|+.++-.. ..+|.||+.|--..---.+.++|. . . ++ .+.+.+++++|+.
T Consensus 325 t~dlg~~a~~~ydiE~w~p~-~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai~R~i 394 (418)
T TIGR00414 325 SGDLGFSAAKKYDLEVWMPG-QNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTI 394 (418)
T ss_pred ccccccCHhhhhhHHHhCCC-cCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEEeecCcchHHHHHH
Confidence 31111111122233221011 246878888876655556666653 1 1 11 1236678889864
No 64
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=98.31 E-value=3.6e-06 Score=84.94 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC-------CccCCCcceEeccchHHHH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN-------RYVSNNKPLLRTHTSPMQI 181 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n-------p~~~~~~~~LRt~lsp~~l 181 (338)
...+...+|++|.+.||.||.+|.+++.. ++. +. +.|.+.. ...+ ....|++| |.+.
T Consensus 136 Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~--------~eg--~~---~~F~v~~~~~~~~~~~~~-~~~~L~~S--pql~ 199 (450)
T PRK03932 136 RNTLAQAIHEFFNENGFVWVDTPIITASD--------CEG--AG---ELFRVTTLDLDFSKDFFG-KEAYLTVS--GQLY 199 (450)
T ss_pred HHHHHHHHHHHHHHCCCEEecCCceeccC--------CCC--CC---CceEeecccccccccccC-CCcccccC--HHHH
Confidence 46788999999999999999999997531 111 11 2233310 0001 11456655 4432
Q ss_pred -HHHhcCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 182 -RYSKINKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 182 -~~l~~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
+.+...- -|+|++|+|||.+ . +.+|+|||+|+++-+++. ++.++...++.+++.+
T Consensus 200 lq~l~~g~--~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~--~~~~~m~~~e~li~~~ 257 (450)
T PRK03932 200 AEAYAMAL--GKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFA--DLEDNMDLAEEMLKYV 257 (450)
T ss_pred HHHHHhcc--CCeEEeeeccccCCCCCccccccccccceEEecc--CHHHHHHHHHHHHHHH
Confidence 3444332 4999999999999 4 579999999999988863 5677777777666543
No 65
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=98.30 E-value=1.3e-05 Score=76.69 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
...+.+-+++.+.+.||+++.+|.+.+. ..+..-+.- | .-..+.|.+.+. ..+||++.-+.+....++
T Consensus 55 ~~~l~~~~~~~~~~~G~~ev~~P~l~~~-~l~~~sg~~---~-~~~~~~f~v~~~-----~~~L~pt~e~~~~~l~~~~~ 124 (297)
T cd00770 55 ERALINFALDFLTKRGFTPVIPPFLVRK-EVMEGTGQL---P-KFDEQLYKVEGE-----DLYLIATAEVPLAALHRDEI 124 (297)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcccccH-HHHhhcCcC---c-cChhcccEecCC-----CEEEeecCCHHHHHHHhccc
Confidence 4568888899999999999999999765 445443321 1 111234666442 268888877767665543
Q ss_pred ---CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 ---NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
...|+|++++|+|||++.. -....+|.|.++.+... .-.+.++......+++.| |. ...+...
T Consensus 125 ~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~l-gl-~~~~~~~ 202 (297)
T cd00770 125 LEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQEL-GL-PYRVVNI 202 (297)
T ss_pred CCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEc
Confidence 3579999999999998732 12356889999877643 234677778888888887 85 2222222
Q ss_pred cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCC------CC---eEEEEEeechhHHHH
Q psy9576 252 PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP------EK---YIGFAFGSGLERLTM 315 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~------~~---~~~~afelglerlam 315 (338)
++..-+...+.+.|+..+-.. ..+|.|++.|--..--..+.++|.- ++ +.+.+.+++++|+..
T Consensus 203 ~~~dl~~~~~~~~d~e~~~p~-~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~R~l~ 274 (297)
T cd00770 203 CTGDLGFAAAKKYDIEAWMPG-QGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIV 274 (297)
T ss_pred cCccccCchhhheeeheecCC-CCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeEecccchHHHHHHH
Confidence 332111111233343222111 3468888887655545556665521 11 122446788999754
No 66
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=98.27 E-value=2.3e-05 Score=74.85 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
...+.+.++++|...||.++.+|.++... .|.... ..+ ..+.+.+.++ +.+..+||+-+++..+|.++++
T Consensus 13 ~~~i~~~l~~~f~~~Gy~~i~~P~le~~~-~~~~~~-~~~-----~~~~~~~~D~--~G~~l~LR~D~T~~iaR~~a~~~ 83 (311)
T PF13393_consen 13 RERIESKLREVFERHGYEEIETPLLEYYE-LFLDKS-GED-----SDNMYRFLDR--SGRVLALRPDLTVPIARYVARNL 83 (311)
T ss_dssp HHHHHHHHHHHHHHTT-EE-B--SEEEHH-HHHCHS-STT-----GGCSEEEECT--TSSEEEE-SSSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEeecH-Hhhhcc-ccc-----hhhhEEEEec--CCcEeccCCCCcHHHHHHHHHhc
Confidence 46788999999999999999999997653 333211 111 1245777665 4566899999999999998763
Q ss_pred --CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH---HHHHHHHHHHHH-HhccC
Q psy9576 188 --KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF---SDLKGVYLNFIR-VFFES 243 (338)
Q Consensus 188 --~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f---~dLKg~l~~ll~-~lfg~ 243 (338)
..|.|++.+|+|||... ...+..+|+|+++=++|.+ +. .++-.++..++. .+ |.
T Consensus 84 ~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~-~~~~daEvi~l~~e~l~~~l-~~ 144 (311)
T PF13393_consen 84 NLPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSS-SLEADAEVIKLADEILDREL-GL 144 (311)
T ss_dssp GSSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSS-SHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCC-CHHHHHHHHHHHHHHHHhhc-CC
Confidence 57999999999999983 4456778899999888865 33 356667777775 66 63
No 67
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.24 E-value=2.3e-05 Score=77.83 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
.....+.+.++++|...||.++.+|.++.. ..|.+- +-..+ ..+|.+.++. +.+...||+-+++..+|.++
T Consensus 22 ~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~-e~~~~~~g~~~~------~~~y~f~D~~-~g~~l~LRpD~T~~iaR~~a 93 (392)
T PRK12421 22 QKIERLRRRLLDLFASRGYQLVMPPLIEYL-ESLLTGAGQDLK------LQTFKLIDQL-SGRLMGVRADITPQVARIDA 93 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeCcchhhH-HHHhccCCccch------hceEEEEcCC-CCcEEEECCcCCHHHHHHHH
Confidence 345678899999999999999999999653 344321 21111 1346665541 23446899999999999775
Q ss_pred cC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 IN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
.+ ..|.|+|.+|+|||.+. ......+|+|+..=++|.+.-. .++-.++...++.+ |.
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l-gi 156 (392)
T PRK12421 94 HLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA-GV 156 (392)
T ss_pred hhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc-CC
Confidence 43 46999999999999873 3346778999999998854322 24555555566665 54
No 68
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=98.23 E-value=1e-05 Score=84.01 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH--Hhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY--SKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~--l~~ 186 (338)
..++...+|++|...||.||.+|.+.... |+. ||+ |.+.......++..|+ .||.+..- |..
T Consensus 144 Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~--------~eg--a~~----f~v~~~~~~~~~~~L~--qSpql~kq~l~~~ 207 (588)
T PRK00476 144 RSKVTSAIRNFLDDNGFLEIETPILTKST--------PEG--ARD----YLVPSRVHPGKFYALP--QSPQLFKQLLMVA 207 (588)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecCC--------CCC--Ccc----ceecccccCCceeecC--CCHHHHHHHHHhc
Confidence 36788999999999999999999997531 111 121 2211100011223454 55766442 333
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.- -|+|++|+|||.+ .+.+|.|||+|+++-+++ ++..++...++.+++.++
T Consensus 208 g~--~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af--~~~~dvm~~~E~li~~i~ 259 (588)
T PRK00476 208 GF--DRYYQIARCFRDEDLRADRQPEFTQIDIEMSF--VTQEDVMALMEGLIRHVF 259 (588)
T ss_pred cc--CceEEEeceeecCCCCCCcCcccccceeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 3999999999999 466677799999999887 478899999888887765
No 69
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=98.22 E-value=6.2e-06 Score=83.24 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchh--hhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH-HHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFN--NFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ-IRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~--nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~-l~~l~ 185 (338)
...+...+|++|.+.||.||.+|.++...- .-+...++.++.. .... |...+ ..|++| |.+ ++.+.
T Consensus 139 Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~--~~~~-~~~~~------~yL~~S--pql~lq~l~ 207 (453)
T TIGR00457 139 RNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGID--FSQD-FFGKE------AYLTVS--GQLYLETYA 207 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccc--cchh-ccCCc------cccccC--HHHHHHHHh
Confidence 357789999999999999999999975320 0000000000000 0000 11222 356655 544 23343
Q ss_pred cCCCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 186 INKPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
..- -|+|++|+|||.+ .+ .+|++||+|+++-++.. ++.++...++.+++.+
T Consensus 208 ~g~--~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~--~~~dvm~~~E~lv~~i 260 (453)
T TIGR00457 208 LAL--SKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFA--NLNDLLQLAETLIKYI 260 (453)
T ss_pred hcc--cCceEeeeccccCCCCCCcCcchhccceeeeecC--CHHHHHHHHHHHHHHH
Confidence 222 4999999999999 45 58999999999988763 5777777777666543
No 70
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.1e-05 Score=78.51 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC--CCCCcCccceeecCCccCCCcceEeccchHHHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN--HPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~--hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~ 183 (338)
....+.+.+.+++++.+.||+++.+|.+|... -|.+ ...+. -+. .+.+.+.+. +.....||+-+++..+|.
T Consensus 18 ~~~~~~i~~~~~~v~~~yGf~eI~TPifE~te-lf~r-~~Ge~td~v~---kemY~F~Dk--ggr~laLRpe~Tapv~R~ 90 (429)
T COG0124 18 MALREYIESTIRKVFESYGFSEIRTPIFEYTE-LFAR-KSGEETDVVE---KEMYTFKDK--GGRSLALRPELTAPVARA 90 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCCEeccCccccchh-Hhhh-ccCCcccccc---cceEEEEeC--CCCEEEecccCcHHHHHH
Confidence 34567889999999999999999999997542 3431 12221 111 223444444 356679999999999998
Q ss_pred HhcC----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCC--CHHHHHHHHHHHHHHhccC
Q psy9576 184 SKIN----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNI--SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 184 l~~~----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~--~f~dLKg~l~~ll~~lfg~ 243 (338)
...+ ..|+|.|.+|.|||.+ ..+-...+|||+.+=++|..- .-+++-.++..+++.+ |+
T Consensus 91 ~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l-Gi 156 (429)
T COG0124 91 VAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL-GI 156 (429)
T ss_pred HHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc-CC
Confidence 8643 4699999999999999 466788999999999988542 2255677777777777 76
No 71
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.20 E-value=2.3e-05 Score=75.44 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
....+.+.++++|...||.++.+|.++.. ..|.... +..+ .+.|.+..+ +.+..+||+-+++..+|.+.+
T Consensus 10 ~~~~i~~~l~~~~~~~Gy~~i~tP~le~~-~~~~~~~----~~~~--~~~~~~~d~--~g~~l~LRpD~T~~iaR~~~~~ 80 (314)
T TIGR00443 10 RKEEIERQLQDVFRSWGYQEIITPTLEYL-DTLSAGG----GILN--EDLFKLFDS--LGRVLGLRPDMTTPIARAVSTR 80 (314)
T ss_pred HHHHHHHHHHHHHHHcCCeeccCcchhhH-HHhcccC----Ccch--hceEEEECC--CCCEEeecCcCcHHHHHHHHHh
Confidence 45688999999999999999999999764 3333221 2112 245766554 235579999888889997654
Q ss_pred ---CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+ ....+..+|+|+++=+.|.+... .++-.++..+++.+ |.
T Consensus 81 ~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l-g~ 142 (314)
T TIGR00443 81 LRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL-GL 142 (314)
T ss_pred cccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc-CC
Confidence 24699999999999998 45567888999998888764322 34555555666665 64
No 72
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=98.19 E-value=1.1e-05 Score=84.95 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCC
Q psy9576 84 KVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNR 163 (338)
Q Consensus 84 ~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np 163 (338)
..++....+|..-|. .....--..++...+|++|...||.||.+|.+.... |+. ||+ .+...+-
T Consensus 137 ~~Rl~~RyLDLR~~~---~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~--------~eG--Ar~---~~~p~~~ 200 (706)
T PRK12820 137 DLRLQYRYLDIRRPA---MQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKST--------PEG--ARD---YLVPSRI 200 (706)
T ss_pred hhhhhCceeecCCHH---HHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC--------CCC--Ccc---eEEeeec
Confidence 344455556654332 112223346788999999999999999999997421 111 121 1111110
Q ss_pred ccCCCcceEeccchHHHHHH--HhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 164 YVSNNKPLLRTHTSPMQIRY--SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 164 ~~~~~~~~LRt~lsp~~l~~--l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
...+...|++ ||.+..- |...- -|+|++|+|||.+ .+++|.|||+|+++-++. ++..++...++.+++.+
T Consensus 201 -~~~~~y~L~q--SPQlykq~lm~~G~--~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af--~d~~dvm~l~E~li~~v 273 (706)
T PRK12820 201 -HPKEFYALPQ--SPQLFKQLLMIAGF--ERYFQLARCFRDEDLRPNRQPEFTQLDIEASF--IDEEFIFELIEELTARM 273 (706)
T ss_pred -CCCcceecCC--CHHHHHHHHHhccC--CcEEEEechhcCCCCCCCcCccccccceeecc--CCHHHHHHHHHHHHHHH
Confidence 0112233554 5766443 23333 3999999999999 577788999999999887 68899999999999877
Q ss_pred c
Q psy9576 241 F 241 (338)
Q Consensus 241 f 241 (338)
|
T Consensus 274 ~ 274 (706)
T PRK12820 274 F 274 (706)
T ss_pred H
Confidence 6
No 73
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=98.18 E-value=0.00033 Score=70.28 Aligned_cols=173 Identities=11% Similarity=0.093 Sum_probs=100.9
Q ss_pred HHHHHHHHHHh-hCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 111 RTLERIEKIFY-SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 111 ~~~~~Ir~~~~-~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
.+++-+++.+. ..||+++.+|.+.+... +..- .|-.+-..+.|.|.+. ..+|+++.=+.+......
T Consensus 175 aL~~~~~~~~~~~~G~~ev~~P~lv~~~~-~~~~----G~~~~f~~~ly~i~~~-----~~~L~pTsE~~l~~l~~~~~~ 244 (425)
T PRK05431 175 ALIQFMLDLHTEEHGYTEVIPPYLVNEES-MYGT----GQLPKFEEDLYKIEDD-----DLYLIPTAEVPLTNLHRDEIL 244 (425)
T ss_pred HHHHHHHHHHHHhcCCEEEeccccccHHH-Hhhc----CccccchhhceEecCC-----CEEEEeCCcHHHHHHHhcccC
Confidence 44555566677 89999999999977643 3322 2222333355677532 257887755545544432
Q ss_pred --CCCCceEEEeeeEEEeCCCC--------CCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 187 --NKPPIKVITSGRVYRIDSDS--------THSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d~--------th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
...|++++++|+|||.+..+ ...++|++.++.+... ...+..+....+.+++.| |. ...+-..+
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~L-gl-pyr~v~~~ 322 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKL-EL-PYRVVLLC 322 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEcC
Confidence 34699999999999998421 2467899999887643 245777888888888887 85 22221223
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
+...+.-.+.+.|+..+-.. ..+|.|++.|--..--..+.+++
T Consensus 323 s~dlg~~a~~~~DiE~w~p~-~~~~~ev~s~snc~d~qsrr~~i 365 (425)
T PRK05431 323 TGDLGFSAAKTYDLEVWLPS-QNTYREISSCSNCTDFQARRANI 365 (425)
T ss_pred CcccCCchHheecHHHhCcc-cCCeeEEEEecCccchhhhhcCc
Confidence 32222222233333222111 24577777765553334444444
No 74
>PLN02903 aminoacyl-tRNA ligase
Probab=98.17 E-value=1.3e-05 Score=83.49 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=85.4
Q ss_pred HHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-CCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC
Q psy9576 84 KVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS-IGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN 162 (338)
Q Consensus 84 ~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~-~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n 162 (338)
+.+++...+|..-|.. ....--..++...+|++|.. .||.||.+|.+.... |+ -+|+.-...++ .
T Consensus 184 e~Rl~~RyLDLR~~~~---q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st--------~e--Gardf~v~~~~-~ 249 (652)
T PLN02903 184 EVRLRYRVLDLRRPQM---NANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRST--------PE--GARDYLVPSRV-Q 249 (652)
T ss_pred hhhhccceeecCCHHH---HHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCC--------CC--CCcccEEeeec-C
Confidence 3344445555543321 11222346788999999997 999999999996431 11 11211000111 1
Q ss_pred CccCCCcceEeccchHHHHHH--HhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHH
Q psy9576 163 RYVSNNKPLLRTHTSPMQIRY--SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239 (338)
Q Consensus 163 p~~~~~~~~LRt~lsp~~l~~--l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~ 239 (338)
+ .....|+ .||.+..- |.... -|+|++|+|||.+ .++.|.|||+|+++-++. +++.|+..+++.+++.
T Consensus 250 ~---g~~y~L~--qSPQlykQ~Lm~~G~--~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf--~d~~dvm~~~E~li~~ 320 (652)
T PLN02903 250 P---GTFYALP--QSPQLFKQMLMVSGF--DRYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLEDMLKLNEDLIRQ 320 (652)
T ss_pred C---CcccccC--CCHHHHHHHHHhccC--CcEEEEehhhccCCCCCCcccceeeeeeeecC--CCHHHHHHHHHHHHHH
Confidence 1 1223455 45766543 33333 3999999999999 466777999999998887 4789999999988876
Q ss_pred hc
Q psy9576 240 FF 241 (338)
Q Consensus 240 lf 241 (338)
++
T Consensus 321 v~ 322 (652)
T PLN02903 321 VF 322 (652)
T ss_pred HH
Confidence 65
No 75
>PLN02972 Histidyl-tRNA synthetase
Probab=98.16 E-value=3.7e-05 Score=81.32 Aligned_cols=126 Identities=15% Similarity=0.125 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
..+.+.+.++++|...||.++.+|.++.. ..|... ..++ ....|.+.++ +.+...||+-+++...|.+..+
T Consensus 343 ~re~I~~~L~~vFk~hGy~eI~TPvfE~~-Ell~~k-~Ged-----~k~mY~f~D~--gGr~LaLRPDlTvPiAR~vA~n 413 (763)
T PLN02972 343 IREKAFSIITSVFKRHGATALDTPVFELR-ETLMGK-YGED-----SKLIYDLADQ--GGELCSLRYDLTVPFARYVAMN 413 (763)
T ss_pred HHHHHHHHHHHHHHHcCCEEccCCcccch-HHhhcc-cCcc-----hhheEEEECC--CCCEEEeCCCChHHHHHHHHhC
Confidence 35678899999999999999999999753 344321 1111 1235666655 3456799999999999988764
Q ss_pred -CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCC---HHHHHHHHHHHHHHhccC
Q psy9576 188 -KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNIS---FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 -~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~---f~dLKg~l~~ll~~lfg~ 243 (338)
..|+|.|.+|+|||.+ ...-+..+|+|+.+=++|..-+ =.++-.++...++.+ |.
T Consensus 414 ~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L-Gi 473 (763)
T PLN02972 414 GITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL-DI 473 (763)
T ss_pred CCCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC-CC
Confidence 4689999999999998 3445678999999999885222 255667777777776 65
No 76
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.15 E-value=3e-05 Score=76.91 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
...+.+.++++|...||.++.+|.++.. ..|..-. .+..+ ...|.+.... +....+||+-+++..+|.+..+
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~-e~~~~~~---g~~~~--~~~~~f~d~~-~g~~l~LRpD~T~~iaR~~a~~~ 92 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYL-DTLLAGG---GAILD--LRTFKLVDQL-SGRTLGLRPDMTAQIARIAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhH-HHHhccC---Cccch--hhhEEEeecC-CCCEEEECCCCcHHHHHHHHHhc
Confidence 4578899999999999999999999752 3443211 11112 2446654431 2345799999999999987542
Q ss_pred ---CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 188 ---KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ---~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|.+|+|||.+ ....+..+|+|+.+=++|.+... .++-.++..+++.+ |.
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l-gl 153 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL-GL 153 (391)
T ss_pred cCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc-CC
Confidence 4599999999999998 34567889999999888854222 34555666666666 64
No 77
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.14 E-value=3.5e-05 Score=81.07 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-...+.+.+++.+...||+++.+|.+++. ..|..-+ -.+|-.. +-| .... +.+..+||+...|+..+..++
T Consensus 276 ~~~~i~~~~~~~~~~~G~~~v~tP~l~~~-~l~~~sG-~~~~~~~---emy-~~d~--~~~~~~LrP~~~~~~~~~~~~~ 347 (639)
T PRK12444 276 IRNELEAFLREIQKEYNYQEVRTPFMMNQ-ELWERSG-HWDHYKD---NMY-FSEV--DNKSFALKPMNCPGHMLMFKNK 347 (639)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHhhcC-Chhhhhh---hcC-eecC--CCcEEEEccCCCHHHHHHHhCc
Confidence 45678999999999999999999999775 3444322 1112111 223 3222 234467999999999988754
Q ss_pred ----CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|.|||.+. .. ....+|+|.++-+.+.. ..+.++...+..+++.+ |.
T Consensus 348 ~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~l-gl 416 (639)
T PRK12444 348 LHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTF-GF 416 (639)
T ss_pred ccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 245999999999999984 22 24678999998877642 22445777778888887 86
No 78
>KOG0556|consensus
Probab=98.08 E-value=1.5e-06 Score=84.28 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=68.7
Q ss_pred hHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec
Q psy9576 82 QLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK 161 (338)
Q Consensus 82 ~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~ 161 (338)
.+..+|....+|...|..... ..-...+....|++|...||.|+.+|-+.+... ..-...|.++
T Consensus 207 n~dtRLdnRvlDLRtptnqAi---Friq~gvc~~FRe~L~~kgF~EIhTpKli~asS-------------EGGanvF~v~ 270 (533)
T KOG0556|consen 207 NLDTRLDNRVLDLRTPTNQAI---FRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS-------------EGGANVFRVS 270 (533)
T ss_pred cccccccceeeecccccchhe---eehHHHHHHHHHHHHHhcCcceecccccccccC-------------CCCceeEEEE
Confidence 345566777777777764332 233456788899999999999999998755321 1111234443
Q ss_pred ---CCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCCCCCC--Ccce
Q psy9576 162 ---NRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTH--SPMF 212 (338)
Q Consensus 162 ---np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~d~th--~~~f 212 (338)
.+ -+| .-||.+.+.|.--..--|+||+|.|||.+.+.|| +-+|
T Consensus 271 Yfk~~------A~L--AQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEF 318 (533)
T KOG0556|consen 271 YFKQK------AYL--AQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEF 318 (533)
T ss_pred eccCc------chh--hcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHh
Confidence 33 233 4568888877643334499999999999854444 4444
No 79
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.08 E-value=7.8e-05 Score=73.52 Aligned_cols=125 Identities=15% Similarity=0.157 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
.+..+.+.++++|...||.++.+|.++.. ..|....-+. .+ ...|.+.++ +....+||+-+++...|....
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~-e~~~~~~g~~---~~--~~~~~f~D~--~G~~l~LRpD~T~piaR~~~~~ 77 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPA-EPFLDLSGED---IR--RRIFVTSDE--NGEELCLRPDFTIPVCRRHIAT 77 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccH-HHhhhccCch---hh--cceEEEECC--CCCEEeeCCCCcHHHHHHHHHc
Confidence 45688999999999999999999999763 3443221111 11 234666555 234579999999999987543
Q ss_pred -CCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCC---CHHHHHHHHHHHHHHhccC
Q psy9576 187 -NKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNI---SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~---~f~dLKg~l~~ll~~lfg~ 243 (338)
...|.|+|.+|+|||.+ .-...+|+|+.+=++|..- .=.++-.++...++.+ |.
T Consensus 78 ~~~~p~R~~Y~g~VfR~~--~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l-gl 135 (373)
T PRK12295 78 AGGEPARYAYLGEVFRQR--RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL-GP 135 (373)
T ss_pred CCCCCeEEEEEccEEECC--CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc-CC
Confidence 35699999999999987 3356789999998888532 2346777777778887 75
No 80
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.07 E-value=7e-05 Score=71.61 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||+++.+|.++.. ..|..- .|-..-..+.|.+... .+..+||+.+.|...+..+.
T Consensus 31 ~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~-~l~~~s----g~~~~~~~~my~~~~~---~~~l~LRP~~~~~~~~~~~~ 102 (298)
T cd00771 31 IIRNELEDFLRELQRKRGYQEVETPIIYNK-ELWETS----GHWDHYRENMFPFEEE---DEEYGLKPMNCPGHCLIFKS 102 (298)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeecCH-HHHhhC----CCccccccCceEeccC---CceEEEcccCCHHHHHHHHh
Confidence 345678888999999999999999999765 344432 2322222345666432 24479999988988776643
Q ss_pred -----CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC-CC---HHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN-IS---FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~-~~---f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+. .. ....+|+|.++-+.+.. -. +.++..++..+++.+ |.
T Consensus 103 ~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~l-gl 172 (298)
T cd00771 103 KPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDF-GF 172 (298)
T ss_pred hccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHc-CC
Confidence 246999999999999983 22 34578999999877533 22 234666777777777 75
No 81
>PLN02530 histidine-tRNA ligase
Probab=98.07 E-value=3.2e-05 Score=78.84 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+++.+|.++.. ..|.+-.-+ .. ..+.|.+.+. +....+||+-++|...|.+..+
T Consensus 87 ~~~i~~~~~~~~~~~Gy~~I~tP~lE~~-el~~~~~g~--~~---~~~~y~f~D~--~g~~l~LRpD~T~~iaR~~~~~~ 158 (487)
T PLN02530 87 RNWLFDHFREVSRLFGFEEVDAPVLESE-ELYIRKAGE--EI---TDQLYNFEDK--GGRRVALRPELTPSLARLVLQKG 158 (487)
T ss_pred HHHHHHHHHHHHHHcCCEeccccccchH-HHhccccCc--cc---ccceEEEECC--CCCEEecCCCCcHHHHHHHHhcc
Confidence 5678899999999999999999999763 445432111 11 1244665544 2445799999999999988542
Q ss_pred ---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCC--CHHHHHHHHHHHHHHhccC
Q psy9576 188 ---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNI--SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~--~f~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|.+|+|||.+. ...+..+|+|+.+=+.|.+- .=.++-.++..+++.+ |.
T Consensus 159 ~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l-gl 219 (487)
T PLN02530 159 KSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV-GI 219 (487)
T ss_pred cccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc-CC
Confidence 36999999999999983 44567899998887777432 1234555666666666 64
No 82
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.01 E-value=9.1e-05 Score=74.14 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-...+.+.++++|...||.++.+|.++.. ..|..-. ......+ ..+|.+.++ +....+||+-+++...|.+..
T Consensus 19 ~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~-~~~~~~~-~~~~~~~--~~~~~~~D~--~g~~l~LRpD~T~~iaR~va~ 92 (423)
T PRK12420 19 VLRNKIKRALEDVFERYGCKPLETPTLNMY-ELMSSKY-GGGDEIL--KEIYTLTDQ--GKRDLALRYDLTIPFAKVVAM 92 (423)
T ss_pred HHHHHHHHHHHHHHHHcCCEeccccccchH-HHHhccc-CCCcccc--cceEEEecC--CCceecccccccHHHHHHHHh
Confidence 345788999999999999999999999753 3332210 1111111 245776655 244579999999999998765
Q ss_pred C---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCC--CHHHHHHHHHHHHHHhccC
Q psy9576 187 N---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNI--SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~--~f~dLKg~l~~ll~~lfg~ 243 (338)
+ ..|+|.|.+|+|||.+. ..-+..+|+|+.+=++|.+- .=.++-.++...++.+ |.
T Consensus 93 ~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l-g~ 154 (423)
T PRK12420 93 NPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL-NL 154 (423)
T ss_pred CcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC-CC
Confidence 3 34999999999999873 45678899999998887531 1144555555666665 54
No 83
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.01 E-value=5.6e-05 Score=71.73 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
....+.+.++++|...||+++.+|.++.. ..+.. . ...+.|.+..+ +.+..+||+-+++...|.+..+
T Consensus 21 ~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~-e~~~~---~------~~~~~y~~~D~--~g~~l~LRpD~T~~iaR~~a~~ 88 (281)
T PRK12293 21 LKREIENVASEILYENGFEEIVTPFFSYH-QHQSI---A------DEKELIRFSDE--KNHQISLRADSTLDVVRIVTKR 88 (281)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeccceeeh-hhhcc---c------chhceEEEECC--CCCEEEECCcCCHHHHHHHHHh
Confidence 34677889999999999999999999632 22211 1 11345776655 3456799999999999987542
Q ss_pred ----CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 188 ----KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ----~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
..|.|++.+|+|||.+. .||+|+..=++|... ..++-.++...++.+ |.
T Consensus 89 ~~~~~~p~r~~Y~g~vfR~~~-----rEf~Q~GvEliG~~~-~~Evi~la~~~l~~l-gl 141 (281)
T PRK12293 89 LGRSTEHKKWFYIQPVFRYPS-----NEIYQIGAELIGEED-LSEILNIAAEIFEEL-EL 141 (281)
T ss_pred cccCCCceeEEEeccEEecCC-----CcccccCeEeeCCCC-HHHHHHHHHHHHHHc-CC
Confidence 35899999999999852 589999988888643 467888888888777 74
No 84
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.99 E-value=0.00025 Score=73.65 Aligned_cols=129 Identities=8% Similarity=0.101 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.|...||+++.+|.+++. ..|..= .|-..-..+.|.+.+. ..+..+||++.-+.....++.
T Consensus 48 ~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~-~l~~~s----g~~~~~~~emf~~~d~--~~~~l~LrPt~e~~~~~~~~~ 120 (565)
T PRK09194 48 RVLRKIENIVREEMNKIGAQEVLMPALQPA-ELWQES----GRWEEYGPELLRLKDR--HGRDFVLGPTHEEVITDLVRN 120 (565)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECcccCcH-HHHhhc----CCccccchhceEEecC--CCCEEEECCCChHHHHHHHHh
Confidence 346788999999999999999999999765 334321 2222222245777554 234579999665555444422
Q ss_pred -----CCCCceEEEeeeEEEeC-CCCC---CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRID-SDST---HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d~t---h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++.+|+|||.+ .... ...+|+|.++...+.+ ..+..+..+...+++.+ |.
T Consensus 121 ~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l-gl 190 (565)
T PRK09194 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL-GL 190 (565)
T ss_pred hhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 34699999999999998 4322 5789999999999853 23445666778888887 85
No 85
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.99 E-value=6.6e-05 Score=78.90 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||+++.+|.++.. ..|..-+ .-++-.. +.|.+... +.+..+||+.+.|+..+....
T Consensus 271 ~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~-~l~~~~g-~~~~~~~---~my~~~d~--~~~~~~LRP~~~~~~~r~~~~ 343 (638)
T PRK00413 271 TIRRELERYIRRKLRKAGYQEVKTPQILDR-ELWETSG-HWDHYRE---NMFPTTES--DGEEYALKPMNCPGHVQIYKQ 343 (638)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCeeCCH-HHHHhcC-Chhhhhh---ccceeecC--CCcEEEEecCCcHHHHHHHhC
Confidence 346788899999999999999999999765 3454321 1022112 33555433 345579999999998888754
Q ss_pred C-----CCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 N-----KPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~-----~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
+ ..|+|++++|+|||.+. .+ ....+|+|.++-+.|..- .+.++..+...+++.+ |.
T Consensus 344 ~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~l-g~ 413 (638)
T PRK00413 344 GLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDF-GF 413 (638)
T ss_pred cCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 35999999999999983 22 245799999998887532 3466888888888887 86
No 86
>PLN02320 seryl-tRNA synthetase
Probab=97.98 E-value=0.0009 Score=68.06 Aligned_cols=173 Identities=15% Similarity=0.182 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcC-CCCCCCCCcCccceeecCCccCCCcceEeccchHHH----HHHH
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALN-SPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ----IRYS 184 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~-~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~----l~~l 184 (338)
..+++-+++.....||+++.+|.+..... +..=+ .|. .+..+.+.|.+ +++.++-|+=.|.. -+.+
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l-~~~sG~~p~----~e~~~~y~ie~----ed~~Li~TaE~Pl~~~~~~~il 307 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSV-VEKCGFQPR----GDNTQVYSIDG----SDQCLIGTAEIPVGGIHMDSIL 307 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHH-HHhcCCCcc----cccCceeEECC----CceEEeeccccccccccccccc
Confidence 45566677777888999999999977643 33333 222 11114455533 34455555533322 2222
Q ss_pred hcCCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccCCCee-EEEc
Q psy9576 185 KINKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFESDNIQ-IRFR 251 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~~~~~-~r~~ 251 (338)
+....|+|+++.|.|||++.. -...++|++++..+.=. .--|..+...++.+++.| |. ... +...
T Consensus 308 s~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~L-gL-pyrvv~l~ 385 (502)
T PLN02320 308 LESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSL-GL-HFKTLDMA 385 (502)
T ss_pred CHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHc-CC-CeEEEEec
Confidence 334579999999999999832 23456788888776522 234677778888888887 85 222 2222
Q ss_pred cCCCCCCCCceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 252 PSYFPFTEPSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
....-|. .+...||.++ -| ...|.||.-|--..-=..+.++|
T Consensus 386 tgDLg~~-a~kkyDiEvW~P~--~~~y~EvsS~SNc~DfQaRRl~i 428 (502)
T PLN02320 386 TADLGAP-AYRKFDIEAWMPG--LGRYGEISSASNCTDYQSRRLGI 428 (502)
T ss_pred CCccchh-hhheEEEEEEecC--CCcEEEEeeecchhhHhhhcccc
Confidence 2222222 2244455544 22 24588888776544434444444
No 87
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.93 E-value=6.9e-05 Score=77.86 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
..-.+.+.+.+++.+...||+++.+|.+++. ..|.+- .|-.....+.|.+... +.+..+||+.+.|+..+...
T Consensus 206 ~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~-~l~~~s----g~~~~~~~~my~~~d~--~~~~~~LRP~~~~~~~~~~~ 278 (575)
T PRK12305 206 AIIRREIEDYLRKEHLKRGYEFVYTPHIGKS-DLWKTS----GHLDNYKENMFPPMEI--DEEEYYLKPMNCPGHILIYK 278 (575)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHhhc----CCcccchhhccccccc--CCceEEEecCCCHHHHHHHh
Confidence 3346788999999999999999999999765 445542 2211111233555333 23557999999998888765
Q ss_pred cC-----CCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 186 IN-----KPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~-----~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
.. ..|+|++++|+|||.+. .+ ....+|+|.++-+.+.. -.+.++..++..+++.+ |.
T Consensus 279 ~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~l-gl 349 (575)
T PRK12305 279 SRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDF-GF 349 (575)
T ss_pred cccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 42 35999999999999983 22 35579999999888642 12367778888888887 86
No 88
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.92 E-value=0.00011 Score=76.29 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||+++.+|.+++. ..|..-+ |-..-..+.|.+... +.+..+||+...|+..+....
T Consensus 201 ~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~-~l~~~sg----~~~~~~~emy~~~d~--~~~~~~LrP~~~~~i~~~~~~ 273 (563)
T TIGR00418 201 TIRNLLEDFVRQKQIKYGYMEVETPIMYDL-ELWEISG----HWDNYKERMFPFTEL--DNREFMLKPMNCPGHFLIFKS 273 (563)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCH-HHHHhcC----CcccchhhcceeccC--CCceEEEecCCCHHHHHHHhC
Confidence 346788999999999999999999999854 4555422 221112234555443 234579999999999888754
Q ss_pred C-----CCCceEEEeeeEEEeCCCC-----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 N-----KPPIKVITSGRVYRIDSDS-----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~-----~~pirifeiG~Vyr~d~d~-----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
. ..|+|++++|+|||.+... ....+|+|.++-+.+.. ..+.++......+++.+ |.
T Consensus 274 ~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~l-gl 343 (563)
T TIGR00418 274 SLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDF-GF 343 (563)
T ss_pred cCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 3599999999999998322 25678999999888642 23455777788888887 86
No 89
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.92 E-value=0.00052 Score=71.31 Aligned_cols=129 Identities=9% Similarity=0.091 Sum_probs=88.9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc----chHHHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH----TSPMQIR 182 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~----lsp~~l~ 182 (338)
.-.+.+.+.+++.|...||+|+..|.+++. ..+..-+ |-.....+.|.+... ..+..+||++ +++...+
T Consensus 48 rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~-el~~~sg----~~~~~~~emf~~~dr--~~~~l~LrPT~Ee~~t~~~~~ 120 (568)
T TIGR00409 48 RVLKKVENIVREEMNKDGAIEVLLPALQPA-ELWQESG----RWDTYGPELLRLKDR--KGREFVLGPTHEEVITDLARN 120 (568)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchH-HHHhhcC----CCCccchhcEEEecC--CCCEEEEcCCCcHHHHHHHHH
Confidence 356788999999999999999999999873 3443321 111111245777654 2345799996 4544444
Q ss_pred HHhc-CCCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 183 YSKI-NKPPIKVITSGRVYRID-SDS---THSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 183 ~l~~-~~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
.+.. ...|+|++.+|+|||.+ ... ....+|+|.++...+.+ ..+..+......+++.+ |+
T Consensus 121 ~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L-gL 190 (568)
T TIGR00409 121 EIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL-GL 190 (568)
T ss_pred HHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 4433 45799999999999998 432 25789999999999864 23444556668888888 85
No 90
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.90 E-value=9.5e-05 Score=76.40 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=36.6
Q ss_pred ceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH
Q psy9576 191 IKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 191 irifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~ 238 (338)
-|+||+|+|||.+ . +.+|++||+++++-++.. ++.|+..+++.+++
T Consensus 327 ~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~--d~~dvm~l~E~lv~ 374 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFA--DLEDDMNCAEAYVK 374 (572)
T ss_pred CCeEEEccceecCCCCCCcccccccceeeeeecC--CHHHHHHHHHHHHH
Confidence 3999999999999 4 689999999999987753 56666666665553
No 91
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.89 E-value=0.00084 Score=63.15 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~ 183 (338)
..-.+++.+.+++.+...||+++.+|.+++.. .+..-+ .||.-...+.+.+..... .++..+||++..+.+...
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~-~~~~~g---~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~ 107 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILAS-FLEKEA---EHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEI 107 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHH-HHhhcC---CcccccCccceEEEeCCCCccCceEEECCCCCHHHHHH
Confidence 34567888999999999999999999997753 343322 233211123355532210 014468999987777665
Q ss_pred Hhc-----CCCCceEEEeeeEEEeC-CCCC---CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhcc
Q psy9576 184 SKI-----NKPPIKVITSGRVYRID-SDST---HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 184 l~~-----~~~pirifeiG~Vyr~d-~d~t---h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg 242 (338)
.+. ...|+|++.+|+|||.+ .+.. ...+|+|.++...+.+ ..+..+....+.+++.+ |
T Consensus 108 ~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l-~ 179 (264)
T cd00772 108 AAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDL-A 179 (264)
T ss_pred HHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 533 35699999999999998 4422 5678999998887522 23444555567777777 6
No 92
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.82 E-value=0.00028 Score=71.78 Aligned_cols=201 Identities=14% Similarity=0.176 Sum_probs=115.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYS 184 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l 184 (338)
.-...+.+.+++.+...||+++.+|.+.+.. .+.. ...|-..-..+.|.+..... .++..+||++..+.+....
T Consensus 39 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~-~~~~---~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~ 114 (472)
T TIGR00408 39 KIWKNIQKILRNILDEIGHEEVYFPMLIPES-ELAK---EKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMF 114 (472)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHH-HHHh---hcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHH
Confidence 3467888899999999999999999997653 2332 12233211124577754310 0245799999888887555
Q ss_pred hc-----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEc--C---CCCHHHHHHHHHHHHH-HhccCCCeeEE
Q psy9576 185 KI-----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWID--K---NISFSDLKGVYLNFIR-VFFESDNIQIR 249 (338)
Q Consensus 185 ~~-----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g--~---~~~f~dLKg~l~~ll~-~lfg~~~~~~r 249 (338)
++ ...|+|++++|+|||.+. . -....+|.|.++-.+. . .-.+..+......+++ .| |. .....
T Consensus 115 ~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~l-gl-p~~~~ 192 (472)
T TIGR00408 115 KKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSL-AI-PYFVG 192 (472)
T ss_pred hccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcc-CC-eEEEE
Confidence 33 357999999999999984 3 2345677777773222 1 1235566677777777 55 85 33222
Q ss_pred EccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CCCeEEEEEeech-hHHHHHH
Q psy9576 250 FRPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PEKYIGFAFGSGL-ERLTMLR 317 (338)
Q Consensus 250 ~~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~~~~~~afelgl-erlam~~ 317 (338)
.+|. -|+...-...+++...+ +.++++|.+--+.-.--+++++. .+...++-+.+|+ +|+....
T Consensus 193 ~~~~~ek~~ga~~~~~~e~~~~d----gr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s~Gi~eRli~~l 264 (472)
T TIGR00408 193 RKPEWEKFAGAEYTWAFETIMPD----GRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGISTRVIGAL 264 (472)
T ss_pred ecCchhhcCCccceEEEeEEEcC----CCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEccccHHHHHHHHH
Confidence 2332 22222222333443312 23567765443333334455553 1112333355666 9977655
No 93
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.75 E-value=0.00037 Score=65.41 Aligned_cols=182 Identities=11% Similarity=0.112 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CCcceEeccchHHHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~~~~LRt~lsp~~l~~ 183 (338)
..-.+.+.+.+++.+...||+++.+|.+.+.. .+.. ...|-..-..+.|.+.+.... ++..+||++.=+.+...
T Consensus 32 ~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~-~~~~---~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~ 107 (261)
T cd00778 32 YAIWENIQKILDKEIKETGHENVYFPLLIPES-ELEK---EKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPM 107 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHH-Hhhh---hhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHH
Confidence 34466788889999999999999999997642 2211 011221111244666442101 23478999844444333
Q ss_pred H-----hcCCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEE--cC---CCCHHHHHHHHHHHHHHhccCCCeeEE
Q psy9576 184 S-----KINKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWI--DK---NISFSDLKGVYLNFIRVFFESDNIQIR 249 (338)
Q Consensus 184 l-----~~~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~--g~---~~~f~dLKg~l~~ll~~lfg~~~~~~r 249 (338)
. +.+..|+|++++|+|||.+. + .....+|.+.++... .. ...+.++....+.+++.++|. ...+-
T Consensus 108 ~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl-~~~~~ 186 (261)
T cd00778 108 FSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAI-PVVKG 186 (261)
T ss_pred HHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEe
Confidence 3 22457999999999999994 3 345668888888432 22 234666777777777776685 23222
Q ss_pred EccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 250 FRPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 250 ~~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
.+|+ -+....-...+++.+. .+.+.||+.|-.+.-..-++++|
T Consensus 187 ~~~~~d~~~~a~~~~~ie~~~p----~~~~~ev~s~~~l~~~~s~r~~i 231 (261)
T cd00778 187 RKTEWEKFAGADYTYTIEAMMP----DGRALQSGTSHNLGQNFSKAFDI 231 (261)
T ss_pred cCCccccCCCCccceEEEEEee----CCCEEEEEeccccccccchhcCC
Confidence 2332 1111111233344431 23356877764444444445555
No 94
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.70 E-value=0.00014 Score=67.90 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHhhCC--CeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH---
Q psy9576 107 HPIMRTLERIEKIFYSIG--FDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--- 181 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~G--F~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--- 181 (338)
.-.+.+.+.+++.|...| |+++.+|.+++. .-|. ..+- |. +. .....+||+-|.++..
T Consensus 33 ~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~-~mf~-~~~g---~~----------d~--~~~~~~Lrp~~~~~~~~~~ 95 (254)
T cd00774 33 ELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-LMFK-TSIG---PV----------ES--GGNLGYLRPETAQGIFVNF 95 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEeccccCCH-HHhe-eeec---cc----------CC--CCcccccCCcccchHHHHH
Confidence 446788999999999996 999999999876 1121 1110 00 00 1123689998886544
Q ss_pred -HHHh-c-CCCCceEEEeeeEEEeCC-CC---CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 182 -RYSK-I-NKPPIKVITSGRVYRIDS-DS---THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 182 -~~l~-~-~~~pirifeiG~Vyr~d~-d~---th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
+... . ...|++++++|+|||++. .. ....+|.|.++-+.+..- .+...+.....++..+ |.
T Consensus 96 ~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~-G~ 167 (254)
T cd00774 96 KNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKF-AQ 167 (254)
T ss_pred HHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHc-CC
Confidence 3332 2 367999999999999994 22 577899999988876432 2566777777777776 74
No 95
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.64 E-value=0.0017 Score=66.19 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=102.7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHH---
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQI--- 181 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l--- 181 (338)
.-...+.+.+++.|...||+++.+|.+.+.. .+.. ...|-..-..+.|.+..... .++..+||++.=+.+.
T Consensus 45 ~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~-~~~~---~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~ 120 (477)
T PRK08661 45 AIWENIQKILDKLFKETGHENVYFPLLIPES-LLEK---EKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMY 120 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHH-HHhh---hcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHH
Confidence 3457888899999999999999999997653 2221 12333111124466643210 1345799998744333
Q ss_pred -HHHhc-CCCCceEEEeeeEEEeCCCC---CCCcceeEEEEEEEcC-----CCCHHHHHHHHHHHH-HHhccCCCeeEEE
Q psy9576 182 -RYSKI-NKPPIKVITSGRVYRIDSDS---THSPMFHQIEGLWIDK-----NISFSDLKGVYLNFI-RVFFESDNIQIRF 250 (338)
Q Consensus 182 -~~l~~-~~~pirifeiG~Vyr~d~d~---th~~~f~ql~~l~~g~-----~~~f~dLKg~l~~ll-~~lfg~~~~~~r~ 250 (338)
+.+.+ +..|+|++.+|+|||.+... ....+|.+.++-.... .-.+..+......++ +.| |. ....-.
T Consensus 121 ~~~i~SyrdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~L-gl-p~~~~~ 198 (477)
T PRK08661 121 KKWIQSYRDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYL-AI-PVIIGK 198 (477)
T ss_pred HhhhcchhhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhc-CC-eEEEEe
Confidence 33332 45799999999999999421 2456788888744321 123556666777777 454 85 222222
Q ss_pred ccC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 251 RPS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 251 ~ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
+|. -|+.......+++...+ +..+++|.+-.+.-..-+++++
T Consensus 199 ~~~~ekf~ga~~~~~ie~~~~d----gr~~q~gt~~~Lg~~~s~~f~i 242 (477)
T PRK08661 199 KTEWEKFAGADYTYTIEAMMPD----GKALQAGTSHYLGQNFAKAFDI 242 (477)
T ss_pred cChHHhhCCCcceeEEEEEeCC----CCEEEEEEecccccchhHhcCC
Confidence 332 23333333444544412 2235666554444444455565
No 96
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.00068 Score=70.02 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-.+.+.+.+++.+...||++|.+|.+.... -+.. ..|-..-..+.|.+.. ..+...||+...|...+...+
T Consensus 170 i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~e-L~k~----SGh~~~y~~~mf~~~~---~~e~~~LrPm~cp~~~~~~~~~ 241 (545)
T PRK14799 170 IRNELIAFMREINDSMGYQEVYTSHVFKTD-IWKI----SGHYTLYRDKLIVFNM---EGDEYGVKPMNCPAHILIYKSK 241 (545)
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCccchHH-HHhh----ccccccchhhcceeec---cCceEEeccCCCHHHHHHHhcc
Confidence 356788999999999999999999986542 2322 2232111112233322 234579999999999887754
Q ss_pred ----CCCCceEEEeeeEEEeC-CCC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRID-SDS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d-~d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
+..|+|++++|+|||.+ ... ....+|+|.++=+.+.. ..+.++-.++..+++.+ |.
T Consensus 242 ~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~f-G~ 310 (545)
T PRK14799 242 PRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKF-GF 310 (545)
T ss_pred ccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 24699999999999999 443 56788998776555432 12234444555666665 75
No 97
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00059 Score=67.90 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH-HHhcC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR-YSKIN 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~-~l~~~ 187 (338)
.+.+...+|++|.+.||.||.+|.+++... + ...+.|.++-- ..+ -.-+-||++-. ++...
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~-------E------Gg~elF~v~yf--~~~---a~LtqS~QLyke~~~~a 198 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASAT-------E------GGGELFKVDYF--DKE---AYLTQSPQLYKEALAAA 198 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCC-------C------CCceeEEEeec--Ccc---eEEecCHHHHHHHHHHH
Confidence 356788899999999999999999987532 1 11245665422 111 22255566543 33322
Q ss_pred CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
=-|+|++|.+||.+ + ...|+.||+|++.=+.. +++.|+..+++.+++++|
T Consensus 199 --l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf--~~~~d~m~l~E~~i~~i~ 250 (435)
T COG0017 199 --LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAF--ADLNDVMDLAEELIKYLF 250 (435)
T ss_pred --hCceEEecCceecCCCCCcchhhhHheecceecc--CcHHHHHHHHHHHHHHHH
Confidence 23999999999999 4 47899999999977665 346777777776665443
No 98
>PLN02908 threonyl-tRNA synthetase
Probab=97.40 E-value=0.00098 Score=70.80 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.+...||++|.+|.+.+.. .+.. ..|-..-..+-|.++. ..+...||+...|+......+
T Consensus 322 ~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~-l~~~----sGh~~~~~~~mf~~~~---~~~~~~Lrp~~~~~~~~~~~~ 393 (686)
T PLN02908 322 RIYNKLMDFIREQYWERGYDEVITPNIYNMD-LWET----SGHAAHYKENMFVFEI---EKQEFGLKPMNCPGHCLMFAH 393 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccccHH-HHhh----cCCccccchhccEEec---CCeeEEEcCCCcHHHHHHHhc
Confidence 3457889999999999999999999997653 3332 2232211112344422 234479999999999876643
Q ss_pred -----CCCCceEEEeeeEEEeC-C----CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRID-S----DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~----d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||++ . ..+...+|+|.++-+.+.. ..+.++...+..+++.+ |.
T Consensus 394 ~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~l-G~ 463 (686)
T PLN02908 394 RVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVF-GF 463 (686)
T ss_pred cccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 24699999999999999 4 2356788999999887652 22344555666666665 75
No 99
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0041 Score=63.24 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-----CCCCcCccceeecCCccCCCcceEeccchHHHHHHH
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-----HPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS 184 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-----hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l 184 (338)
.++...||++|...||.|+.||.++-+ .|+. -|+|.-...||-.+ -||++.+-|
T Consensus 145 ~kv~~~iR~~ld~~gF~EiETPiLtkS--------TPEGARDfLVPSRv~~G~FYALP-------------QSPQlfKQL 203 (585)
T COG0173 145 SKVTKAIRNFLDDQGFLEIETPILTKS--------TPEGARDFLVPSRVHPGKFYALP-------------QSPQLFKQL 203 (585)
T ss_pred HHHHHHHHHHHhhcCCeEeecCccccC--------CCccccccccccccCCCceeecC-------------CCHHHHHHH
Confidence 577888999999999999999999653 2332 24444334455222 247777654
Q ss_pred --hcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 185 --KINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 185 --~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
..+- -|+|-|.+|||-+. -+-..|||.|++.=++- ++=.|+..+++.+++.+|.
T Consensus 204 LMvsGf--dRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF--~~~edv~~~~E~l~~~vf~ 260 (585)
T COG0173 204 LMVAGF--DRYYQIARCFRDEDLRADRQPEFTQIDLEMSF--VDEEDVMELIEKLLRYVFK 260 (585)
T ss_pred HHHhcc--cceeeeeeeecccccccccCCcceeEeEEeec--CCHHHHHHHHHHHHHHHHH
Confidence 3333 38999999999873 24456999999875542 3447788888888876654
No 100
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.0032 Score=63.46 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHH-
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS- 184 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l- 184 (338)
..-.+.+.+.+++.+...||+|+.+|.+.+.. .+..= .|-..-..+-|.+... ..+..+||++.-|......
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~-l~~~s----g~~~~~~~emf~~~d~--~~~~~~L~Pt~e~~~~~~~~ 119 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPAD-LWRES----GRYDAYGKEMLRIKDR--HDREMLYGPTNEEMITDIFR 119 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHH-HHhhc----CCccccchhheEEecC--CCCEEEEcCCCcHHHHHHHH
Confidence 44578899999999999999999999997643 23211 2211111234666544 2455789986544433322
Q ss_pred ---hc-CCCCceEEEeeeEEEeC-CC---CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 185 ---KI-NKPPIKVITSGRVYRID-SD---STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 185 ---~~-~~~pirifeiG~Vyr~d-~d---~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
.+ +..|+|++++|.|||.+ .. -....+|+|-++...+.+ -.+..+..+...+++.+ |.
T Consensus 120 ~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~l-gl 190 (439)
T PRK12325 120 SYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARL-GL 190 (439)
T ss_pred HHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 22 45799999999999998 43 235678999887777532 13566667777777776 75
No 101
>PLN02837 threonine-tRNA ligase
Probab=97.15 E-value=0.0091 Score=62.74 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
...+.+-+++.....||++|.+|.+.+.. -+..-+ |-..-..+.|.+.+- .++..+|||+.-|......++
T Consensus 250 ~~~L~~~~~~~~~~~G~~~v~tP~l~~~~-l~~~sG----h~~~~~~~mf~~~~~--~~~~y~l~p~~~p~~~~~~~~~~ 322 (614)
T PLN02837 250 RHIIEDSWKKMHFEHGYDLLYTPHVAKAD-LWKTSG----HLDFYKENMYDQMDI--EDELYQLRPMNCPYHILVYKRKL 322 (614)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCHH-HHhhcC----CcccchhhcccccCC--CCceEEECCCCcHHHHHHHhCcc
Confidence 45677778888888999999999997653 233222 111111122443221 234469999999986655433
Q ss_pred ---CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcC----CCCHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDK----NISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~----~~~f~dLKg~l~~ll~~lfg~ 243 (338)
+..|+|++++|+|||.+. .+ ....+|+|.++-+.-. .-.+..+......+++.| |.
T Consensus 323 ~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~l-g~ 390 (614)
T PLN02837 323 HSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQF-GF 390 (614)
T ss_pred CChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 346999999999999983 32 3567898888865421 123566667777777666 75
No 102
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=97.12 E-value=0.019 Score=58.86 Aligned_cols=147 Identities=20% Similarity=0.306 Sum_probs=83.6
Q ss_pred ceEeccchHHHHHHHhc-----CCCCceEEE-eeeEEEeCC----CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKI-----NKPPIKVIT-SGRVYRIDS----DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLN 235 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~-----~~~pirife-iG~Vyr~d~----d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ 235 (338)
.+||+..=|...-..+. ...|+|+++ .|.|||.+. +-....+|+|.++.+.+.. --+..+....+.
T Consensus 310 yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~ 389 (517)
T PRK00960 310 YVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHI 389 (517)
T ss_pred ccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 58898877777655442 346999999 889999994 2356778999999988642 123344455556
Q ss_pred HHHHhccCCCeeEEEccCCCCCCC---------------CceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCCCCC
Q psy9576 236 FIRVFFESDNIQIRFRPSYFPFTE---------------PSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNLDPE 299 (338)
Q Consensus 236 ll~~lfg~~~~~~r~~ps~fpf~~---------------Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi~~~ 299 (338)
+++.| |. .. +|- ....||.. ....+.++.. .+. .+.|.+|..|---.-.-.+.++|...
T Consensus 390 i~~~L-gL-p~-~r~-v~~DPFf~~~~k~~~~d~~f~~~~tydiE~wmP~~~~-~gk~~ev~S~S~hgd~farrfnIk~~ 464 (517)
T PRK00960 390 LAEKL-DL-EY-WRE-VGDDPFYLEGRGLEDRGIEFPDVPKYEMELWLPYRGD-ERKWVAVTSANVHGTHFVEGFNIKDY 464 (517)
T ss_pred HHHHc-CC-Cc-eEE-ecccccccccCccccccccCccccceeEEEEecCccC-CCCEEEEEeeeeccchhhHhhCcccC
Confidence 66666 75 20 121 11112111 1122333221 111 34588888765443333445666421
Q ss_pred ----CeEEEEEeechhHHHH---HHcCCCc
Q psy9576 300 ----KYIGFAFGSGLERLTM---LRYGIDD 322 (338)
Q Consensus 300 ----~~~~~afelglerlam---~~~~i~d 322 (338)
-|+ -++|++++|++- .-||.++
T Consensus 465 ~g~~~hT-nctG~g~eR~l~AlLe~hG~d~ 493 (517)
T PRK00960 465 KGRKLWT-GCTGYGLERWVIGFLAQKGFDP 493 (517)
T ss_pred CCCeEee-cceeeHHHHHHHHHHHhcCCCC
Confidence 244 688999999753 3455544
No 103
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.10 E-value=0.0056 Score=57.87 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
....+.+.++++|...||+++.+|.+|.-. .+. . ..+... ..+++...+. +....+||+-++|...|.++..
T Consensus 9 ~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d-~~~-~--~~~~~~---~~~~~~~~~~-~Gr~laLRpD~T~~iAR~~a~~ 80 (272)
T PRK12294 9 ALKESETAFLKYFNKADYELVDFSVIEKLD-WKQ-L--NHEDLQ---QMGERSFWQH-EHQIYALRNDFTDQLLRYYSMY 80 (272)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCcchhHH-hhh-c--cccchh---hhheeeeecC-CCCEEEEcCCCCHHHHHHHHhc
Confidence 346789999999999999999999996532 231 1 111111 1223322221 3455899999999999987642
Q ss_pred -CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEc--CCCCHHHH
Q psy9576 188 -KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWID--KNISFSDL 229 (338)
Q Consensus 188 -~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g--~~~~f~dL 229 (338)
..+.|++..|+|||.+. +++|+..=++| ...+..++
T Consensus 81 ~~~~~Rl~Y~g~VfR~~~------~~~Q~GvEliG~~~~a~~e~l 119 (272)
T PRK12294 81 PTAATKVAYAGLIIRNNE------AAVQVGIENYAPSLANVQQSF 119 (272)
T ss_pred CCCCceEEEeccEeccCC------CcceeceEEECCCchhHHHHH
Confidence 34569999999999862 26888877778 33444444
No 104
>KOG1936|consensus
Probab=96.80 E-value=0.016 Score=57.34 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=102.0
Q ss_pred ccCCCCCCCCCCCCCCCCh--HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 90 NKIDITLPGRGKNKGGLHP--IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 90 ~~id~tlp~~~~~~G~~hp--~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
.++.+..|.+....+..+- .+.+.+.|+++|...|...+++|.++....-..+-+- +. +-+|=... .+.
T Consensus 56 ~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGE-------ds-kLiYdlkD-QGG 126 (518)
T KOG1936|consen 56 KKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGE-------DS-KLIYDLKD-QGG 126 (518)
T ss_pred cceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccc-------cc-ceeEehhh-cCC
Confidence 3456666765544433222 3577889999999999999999999876443333321 11 22332222 156
Q ss_pred CcceEeccchHHHHHHHhcC-CCCceEEEeeeEEEeC-C--CCCCCcceeEEEEEEEcCC---CCHHHHHHHHHHHHHHh
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN-KPPIKVITSGRVYRID-S--DSTHSPMFHQIEGLWIDKN---ISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~-~~pirifeiG~Vyr~d-~--d~th~~~f~ql~~l~~g~~---~~f~dLKg~l~~ll~~l 240 (338)
+..-||.-|++...|.+..| -..++-+-+++|||+| . ..-...||.|.++=++|.- +-=+++-+++..++..+
T Consensus 127 El~SLRYDLTVPfARylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 127 ELCSLRYDLTVPFARYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL 206 (518)
T ss_pred cEEEeecccccHHHHHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc
Confidence 77899999999999988654 4589999999999999 3 4667789999999888842 23367888888889888
Q ss_pred ccC
Q psy9576 241 FES 243 (338)
Q Consensus 241 fg~ 243 (338)
|+
T Consensus 207 -~I 208 (518)
T KOG1936|consen 207 -GI 208 (518)
T ss_pred -Cc
Confidence 86
No 105
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.69 E-value=0.17 Score=51.66 Aligned_cols=195 Identities=13% Similarity=0.146 Sum_probs=103.7
Q ss_pred HHHHHHHHHHH-----hhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc--------------------
Q psy9576 110 MRTLERIEKIF-----YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY-------------------- 164 (338)
Q Consensus 110 ~~~~~~Ir~~~-----~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~-------------------- 164 (338)
..+.+.+.+++ ...||+++..|.+.+... +.+.. |-..-..+.+++..+.
T Consensus 223 a~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~-l~k~g----hl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eip 297 (520)
T TIGR00415 223 TALFRALEEFFIEEIVKKIGFQECLFPKLIPLDI-MNKMR----YLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIP 297 (520)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHH-HcccC----CCCCCchhheEEecCCCCcchhhccccccccccccc
Confidence 34455555444 346999999999977643 33322 1111112334442110
Q ss_pred -------cCCCcceEeccchHHHHHHHh-----cCCCCceEEE-eeeEEEeCC----CCCCCcceeEEEEEEEcCC----
Q psy9576 165 -------VSNNKPLLRTHTSPMQIRYSK-----INKPPIKVIT-SGRVYRIDS----DSTHSPMFHQIEGLWIDKN---- 223 (338)
Q Consensus 165 -------~~~~~~~LRt~lsp~~l~~l~-----~~~~pirife-iG~Vyr~d~----d~th~~~f~ql~~l~~g~~---- 223 (338)
..++..+||++.=..+....+ ....|++++. .|.|||.+. +-....+|++.|++..+..
T Consensus 298 i~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~ 377 (520)
T TIGR00415 298 IDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETE 377 (520)
T ss_pred cccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHH
Confidence 012245788774444433332 2346999999 779999984 2345668999999998642
Q ss_pred CCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCC------------ce---EEEEEee-cCCCCCCCeeEeeeeecC
Q psy9576 224 ISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEP------------SA---EIDIVFQ-DGPLKGNWLEISGAGQVN 287 (338)
Q Consensus 224 ~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~P------------s~---e~~i~~~-~g~~~~gwieig~~G~vh 287 (338)
--+..+....+.+++.| |+ .++......||... ++ +..+... ......| .-..+|-.|
T Consensus 378 e~~e~mle~~~~~l~~L-~L---pyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g--~AlqS~n~H 451 (520)
T TIGR00415 378 EIRDKTLELAEDAADEL-DL---EWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKG--VAVTSANVH 451 (520)
T ss_pred HHHHHHHHHHHHHHHHc-CC---CeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCCCCC--cEEEEeech
Confidence 22455666777777776 74 44544444453221 11 2322221 0000122 223456677
Q ss_pred HHHh-hhCCCCCCC---eEEEEEeechhHHHH
Q psy9576 288 PKVL-CNMNLDPEK---YIGFAFGSGLERLTM 315 (338)
Q Consensus 288 P~Vl-~~~gi~~~~---~~~~afelglerlam 315 (338)
=+-. +.|+|...+ .-..++|+|++|++-
T Consensus 452 g~hF~k~F~I~~~~~~~a~ttC~G~gleR~i~ 483 (520)
T TIGR00415 452 GTHFIEGFRIKDAKGLNIWTGCTGIGISRWIV 483 (520)
T ss_pred hcccccccCcccCCCCeEEEeeeeccHHHHHH
Confidence 3222 235664221 224588999999764
No 106
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.67 E-value=0.019 Score=58.26 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCcceEeccchHHHHHHHh----c-C-CCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEE-EcCCC---CHHHHHHH
Q psy9576 167 NNKPLLRTHTSPMQIRYSK----I-N-KPPIKVITSGRVYRID-SDS---THSPMFHQIEGLW-IDKNI---SFSDLKGV 232 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l~~l~----~-~-~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~-~g~~~---~f~dLKg~ 232 (338)
....+||+-|..++.-..+ . + ..|+++.++|+|||++ +.. ....+|+|.++-+ +..+- -+......
T Consensus 157 ~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~ 236 (456)
T PRK04173 157 KSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIEL 236 (456)
T ss_pred CcceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHH
Confidence 3456899988877754442 2 3 5799999999999999 432 3447899988843 33322 24455556
Q ss_pred HHHHHHHhccCCCeeEEEcc
Q psy9576 233 YLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~p 252 (338)
+..++..+ |.+...+++++
T Consensus 237 ~~~~l~~l-G~~~~~~~~s~ 255 (456)
T PRK04173 237 RKNWLLDL-GIDPENLRFRE 255 (456)
T ss_pred HHHHHHHc-CCCccceEEEe
Confidence 66667665 86222345543
No 107
>KOG0554|consensus
Probab=96.53 E-value=0.0059 Score=59.69 Aligned_cols=94 Identities=21% Similarity=0.158 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc--chHHH--HHHHhc
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH--TSPMQ--IRYSKI 186 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~--lsp~~--l~~l~~ 186 (338)
.+.....++|...+|..+.+|.+++.+ |-.+ .+.|.+......+...-=|+. |..+| +++|..
T Consensus 137 ~~~~a~h~ffq~~~F~~i~tPiiTt~D-CEGa------------GE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~ 203 (446)
T KOG0554|consen 137 ALAFATHSFFQSHDFTYINTPIITTND-CEGA------------GEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMAC 203 (446)
T ss_pred HHHHHHHHHHHHcCceEecCcEeeccC-CCCC------------cceEEEEecCcccccccCCceEEEEeceehHHHHHh
Confidence 345567889999999999999998762 2111 112322211000000111111 22333 455543
Q ss_pred CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEE
Q psy9576 187 NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLW 219 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~ 219 (338)
.- -|++-.|..||.| + .+.|+.+|+++|.=+
T Consensus 204 ~L--srvyTfgP~FRAEnS~tsRHLAEFwMlEaE~ 236 (446)
T KOG0554|consen 204 AL--SRVYTFGPTFRAENSHTSRHLAEFWMLEAEL 236 (446)
T ss_pred hh--cceEeeccceecccCCchhHHhhhhhhhhHH
Confidence 32 2778899999999 4 589999999988644
No 108
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=96.50 E-value=0.049 Score=57.24 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-...+.+-+++.+...||++|.+|.+-... .+.. ..|-..-..+.|.+... .+..+||+..-|++.-....
T Consensus 229 i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~-~~~~----sgh~~~f~e~my~v~~~---~e~l~Lrp~~c~~~~~~~~~~ 300 (613)
T PRK03991 229 IRDLLEDYVYNLVVELGAMPVETPIMYDLS-HPAI----REHADKFGERQYRVKSD---KKDLMLRFAACFGQFLMLKDM 300 (613)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecChh-HHhh----cccccccchhceEecCC---CceEEEecCCCHHHHHHHhCC
Confidence 356778889999999999999999874321 1111 11222111133555332 34579999988888755533
Q ss_pred ----CCCCceEEEeee-EEEeC-CC----CCCCcceeEEEEEEEcC
Q psy9576 187 ----NKPPIKVITSGR-VYRID-SD----STHSPMFHQIEGLWIDK 222 (338)
Q Consensus 187 ----~~~pirifeiG~-Vyr~d-~d----~th~~~f~ql~~l~~g~ 222 (338)
+..|+|++++|+ |||++ .. -....+|+|.++-....
T Consensus 301 ~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~ 346 (613)
T PRK03991 301 TISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK 346 (613)
T ss_pred cCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC
Confidence 357999999999 99998 32 34667899999876643
No 109
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.98 E-value=0.76 Score=47.11 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccc----hHHHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHT----SPMQI 181 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~l----sp~~l 181 (338)
.--+.++.+.||+.|-+.|-+|+.-|.+.+....-+ .+|-..-..+-+++.+. .++..+||++- ++..-
T Consensus 47 ~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkE-----s~r~~~f~~El~~v~dr--g~~~l~L~PTsEe~it~~~~ 119 (500)
T COG0442 47 LRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKE-----SGRWEGFGPELFRVKDR--GDRPLALRPTSEEVITDMFR 119 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHH-----hChhhhcchhhEEEEcc--CCceeeeCCCcHHHHHHHHH
Confidence 345678899999999999999999999877432222 12211111244677665 35667999873 33322
Q ss_pred HHHhc-CCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEEEcCCCCHHHHHHHHH-------HHHHHhccCCCeeEE
Q psy9576 182 RYSKI-NKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLWIDKNISFSDLKGVYL-------NFIRVFFESDNIQIR 249 (338)
Q Consensus 182 ~~l~~-~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~~g~~~~f~dLKg~l~-------~ll~~lfg~~~~~~r 249 (338)
..+.+ +..|++++-+..|||-+.- --...||.+=++.-.+ .|..++....+ .++..+ | ..++
T Consensus 120 ~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh--~~~e~a~~~y~~~~~~Y~~if~~i-~---l~~~ 193 (500)
T COG0442 120 KWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFH--ADEEDAEETYEKMLDAYSRIFLRL-P---LIFG 193 (500)
T ss_pred HHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeeccccccc--CCHHHHHHHHHHHHHHHHHHHHhC-C---ceEE
Confidence 33333 5689999999999998732 1223455554544443 34445444444 444444 4 2333
Q ss_pred Ecc--CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhC-CCC
Q psy9576 250 FRP--SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNM-NLD 297 (338)
Q Consensus 250 ~~p--s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~-gi~ 297 (338)
-++ +-|+...-|.|+++.+. .+|-..|+.|....-++-+++ +++
T Consensus 194 ~~~ad~g~~Gg~~S~eF~~l~p----d~ge~qi~ts~~y~aN~e~a~~~~~ 240 (500)
T COG0442 194 PVPADEGFIGGSYSHEFEALMP----DGGEDQIATSHHYGANFEKAFIDIK 240 (500)
T ss_pred eecccCCCCCCccceEEEEEcc----CCCccEEEEecchHHhHHHhccCCC
Confidence 343 46777777788888762 234457887777667777777 553
No 110
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=94.45 E-value=0.082 Score=52.37 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-...+.+.+++.|...||.-|++|.++.- +-|..++ .|-.+ .-+|.+.+.. .+..+||+-.++...|....
T Consensus 18 ~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~-d~~l~~~---g~~l~--~~~f~l~d~~--g~~l~LRpD~T~pVaR~~~~ 89 (390)
T COG3705 18 RRKEEIRDQLLALFRAWGYERVETPTLEPA-DPLLDGA---GEDLR--RRLFKLEDET--GGRLGLRPDFTIPVARIHAT 89 (390)
T ss_pred hhHHHHHHHHHHHHHHhCCccccccccchh-hhhhhcc---chhhh--hhheEEecCC--CCeEEecccccHHHHHHHHH
Confidence 345678899999999999999999999753 2333221 12222 2457777663 34489999988888876643
Q ss_pred --CCCCceEEEeeeEEEeCCCCCCCc-ceeEEEEEEEcCC
Q psy9576 187 --NKPPIKVITSGRVYRIDSDSTHSP-MFHQIEGLWIDKN 223 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d~th~~-~f~ql~~l~~g~~ 223 (338)
...|.|+...|+|||........+ ||.|+..=..|.+
T Consensus 90 ~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~ 129 (390)
T COG3705 90 LLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDD 129 (390)
T ss_pred hcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCC
Confidence 246999999999999873222334 7888876555543
No 111
>KOG2411|consensus
Probab=93.96 E-value=0.24 Score=50.02 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=80.4
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-CCCeEeeCCccccchhhhhhcCCCCC-----CCCCcCcccee
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYS-IGFDITDGPEIETDFNNFTALNSPKN-----HPARSMHDTFY 159 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~-~GF~Ev~~~~l~~~~~nf~~L~~p~~-----hpar~~~dt~~ 159 (338)
+++...+|..-|.... ..--...+...||++|.. .||.|+.+|.+= . ..|.. -|+|.....||
T Consensus 161 rl~~RyldLR~~kmq~---nLrlRS~~v~~iR~yl~n~~GFvevETPtLF------k--rTPgGA~EFvVPtr~~~g~FY 229 (628)
T KOG2411|consen 161 RLRFRYLDLRRPKMQN---NLRLRSNVVKKIRRYLNNRHGFVEVETPTLF------K--RTPGGAREFVVPTRTPRGKFY 229 (628)
T ss_pred cchhhhhhhccHHHHH---HHHHHHHHHHHHHHHHhhhcCeeeccCcchh------c--cCCCccceeecccCCCCCcee
Confidence 3444555555554221 122235678899999995 589999999872 2 12322 23333222233
Q ss_pred ecCCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHH
Q psy9576 160 IKNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIR 238 (338)
Q Consensus 160 i~np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~ 238 (338)
.| --||.|.+.|.--..=-|+|-+.||||.+. -+..-|||.|++.=+.- ++..++..+++.+++
T Consensus 230 -----------aL--pQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF--~~~~dim~liEdll~ 294 (628)
T KOG2411|consen 230 -----------AL--PQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSF--TDQEDIMKLIEDLLR 294 (628)
T ss_pred -----------ec--CCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEec--cCHHHHHHHHHHHHH
Confidence 12 235888876532111238899999999883 45578999999875543 345788888999887
Q ss_pred Hhcc
Q psy9576 239 VFFE 242 (338)
Q Consensus 239 ~lfg 242 (338)
+.+.
T Consensus 295 ~~ws 298 (628)
T KOG2411|consen 295 YVWS 298 (628)
T ss_pred Hhch
Confidence 7643
No 112
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.90 E-value=0.67 Score=46.52 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHH----hhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--
Q psy9576 109 IMRTLERIEKIF----YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR-- 182 (338)
Q Consensus 109 ~~~~~~~Ir~~~----~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~-- 182 (338)
...+.+.+.++| ...||+++..|.+.....-+..=.+|. . ..|.|++.++ ++.+.=|+-.|..--
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpk-f----~e~~y~v~~~----~~~LipTaEvpl~~l~~ 243 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPK-F----EEDLYKVEDP----DLYLIPTAEVPLTNLHR 243 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCC-C----cccceEecCC----CEEEEecchhhhHHhhc
Confidence 345555555554 478999999999987655444444443 1 2366888776 446666665553311
Q ss_pred --HHhcCCCCceEEEeeeEEEeCC-----CC---CCCcceeEEEEEEEcC-C---CCHHHHHHHHHHHHHHhccC
Q psy9576 183 --YSKINKPPIKVITSGRVYRIDS-----DS---THSPMFHQIEGLWIDK-N---ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 183 --~l~~~~~pirifeiG~Vyr~d~-----d~---th~~~f~ql~~l~~g~-~---~~f~dLKg~l~~ll~~lfg~ 243 (338)
.+.....|++++....|||++. |. -..++|+.++.++.-+ . ..+..+.+.-+.+++.| ++
T Consensus 244 ~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~L-eL 317 (429)
T COG0172 244 DEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQEL-EL 317 (429)
T ss_pred ccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHh-CC
Confidence 1222457999999999999984 22 3456899999888743 2 34677888889999998 74
No 113
>PRK07080 hypothetical protein; Validated
Probab=92.39 E-value=3.4 Score=39.81 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=83.8
Q ss_pred CCCChHHHHHHHHHHHHhhCC----CeEeeCCccccchhhhhhc----CCCC----CCCCC--cCcc-----cee----e
Q psy9576 104 GGLHPIMRTLERIEKIFYSIG----FDITDGPEIETDFNNFTAL----NSPK----NHPAR--SMHD-----TFY----I 160 (338)
Q Consensus 104 G~~hp~~~~~~~Ir~~~~~~G----F~Ev~~~~l~~~~~nf~~L----~~p~----~hpar--~~~d-----t~~----i 160 (338)
|+.--...+.+.+-.++..+| +.++..|.+-+. ..|++. ++|. .|+-. +..+ -+. +
T Consensus 41 grs~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~-~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~~ll~~~~~~~~~ 119 (317)
T PRK07080 41 GRSGLFEDVVEALDALITRLGADQGAEVLRFPPVMSR-AEFERSGYLKSFPQLAGTVHSFCGNEAEHRRLLACLDRGEDW 119 (317)
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCH-HHHHhcChhhhCcccceeecCCCCCCHHHHHHHHHHHhcCch
Confidence 444455778888888888888 999988887554 456654 2332 12110 0000 000 0
Q ss_pred cCCccCCCcceEeccchHHHHHHHhcC----CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHH----HH
Q psy9576 161 KNRYVSNNKPLLRTHTSPMQIRYSKIN----KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSD----LK 230 (338)
Q Consensus 161 ~np~~~~~~~~LRt~lsp~~l~~l~~~----~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~d----LK 230 (338)
... +.....+|.+..=....-.++.. .....+=-.|.|||.+ + |.+...+|+|-|.+++|..-...+ .+
T Consensus 120 ~~~-l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~ 198 (317)
T PRK07080 120 TES-QKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPEQIVAFRQSWI 198 (317)
T ss_pred hhh-cCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHHHHHHHHHHHH
Confidence 000 01112455555332333344432 1233444579999999 3 778888999999999995322222 35
Q ss_pred HHHHHHHHHhccCCCeeEEEccCCCCCC
Q psy9576 231 GVYLNFIRVFFESDNIQIRFRPSYFPFT 258 (338)
Q Consensus 231 g~l~~ll~~lfg~~~~~~r~~ps~fpf~ 258 (338)
.....+++.| |. .++......||.
T Consensus 199 e~~~~l~~~L-gL---~~~ve~AnDPFF 222 (317)
T PRK07080 199 ERGTAMADAL-GL---PVEIDLANDPFF 222 (317)
T ss_pred HHHHHHHHHh-CC---ceeEeecCCccc
Confidence 5566667776 74 456666677744
No 114
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=91.88 E-value=0.13 Score=49.90 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=21.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...||||+|||+|+..|+++||+-
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv 327 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDV 327 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGG
T ss_pred ccCcceehHHHHHHHHcCCCcHHhe
Confidence 5678999999999999999999974
No 115
>PLN02903 aminoacyl-tRNA ligase
Probab=91.70 E-value=0.15 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEeechhHHHHHHcCCCcccccc
Q psy9576 304 FAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 304 ~afelglerlam~~~~i~diR~~~ 327 (338)
-.+.+|+|||+|+..|.+.||+..
T Consensus 593 gG~alGldRlvmll~~~~~Irdvi 616 (652)
T PLN02903 593 GGIAYGLDRLVMLLAGAKSIRDVI 616 (652)
T ss_pred CceeecHHHHHHHHcCCCchHheE
Confidence 456788999999999999999853
No 116
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.58 E-value=0.56 Score=48.98 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+-++......||++|.+|.+.+... +. ...|-..-..+.|.+... .+-.+||+-.-|+.+...++
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l-~~----~SGH~~~y~e~mf~~~~~---~~~~~lKpmNCpgh~~ifk~ 292 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL-WE----LSGHWDNYKEDMFLTESD---DREYALKPMNCPGHILIFKS 292 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeeccc-ch----hccchhhccccceeeccC---ChhheeeeccCHhHHHHHhc
Confidence 34567888999999999999999998855321 11 112222111122433322 23359999999999988864
Q ss_pred -----CCCCceEEEeeeEEEeC
Q psy9576 187 -----NKPPIKVITSGRVYRID 203 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d 203 (338)
...|+|++|.|.|||.+
T Consensus 293 ~~~SYR~LP~r~~E~g~v~R~E 314 (589)
T COG0441 293 GLRSYRELPLRLAEFGYVYRYE 314 (589)
T ss_pred CCcceeccchhhhhcceeeccc
Confidence 35799999999999998
No 117
>KOG1035|consensus
Probab=90.62 E-value=5.7 Score=44.71 Aligned_cols=196 Identities=15% Similarity=0.071 Sum_probs=105.1
Q ss_pred CCcchHHHHHHHhcCCChhHhhhhchhhH---------HHHHHHHHHHHHHHHHHHHhhHH---HhhccccCCCCCCCCC
Q psy9576 33 GKNGKLTQYIKNIKNISINERKRYGEIIN---------SIKINIKKELNIHRDILKKKQLK---VSLKTNKIDITLPGRG 100 (338)
Q Consensus 33 Gkkg~l~~l~~~l~~l~~eer~~~G~~~n---------~~k~~~~~~~~~~~~~l~~~~~~---~~~~~~~id~tlp~~~ 100 (338)
++-+.=+.++..|=+=+|.+||..-+++| ++....+..+.+..........+ ++...+.++.+.-...
T Consensus 842 ~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llppe~~el~~~~~h~~~~~~~k~~~~~~~~~~~q~~~~~~n~~yd~~~ 921 (1351)
T KOG1035|consen 842 PEHPEEASLIRWLLSHDPSKRPTATELLNSELLPPEESELLVFLQHLYIEQLGKAYKNLLQLIFEQEVLEVLNHQYDLDR 921 (1351)
T ss_pred ccchHHHHHHHHHhcCCCccCCCHHHHhhccCCCccchHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhhhcccccccc
Confidence 33445556677776778888888777665 33333333333322222111111 1111112222222222
Q ss_pred CCCCCCCh-----HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc
Q psy9576 101 KNKGGLHP-----IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH 175 (338)
Q Consensus 101 ~~~G~~hp-----~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~ 175 (338)
...+...+ ...+.+++..+|..-|+.+..+|.+... ..++...+.++.+... +..-..|=--
T Consensus 922 ~~~~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~-----------~~~~~~~~~~v~~ld~--sG~~v~Lp~D 988 (1351)
T KOG1035|consen 922 LSYIQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLR-----------NACAYFSRKAVELLDH--SGDVVELPYD 988 (1351)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccc-----------cccchhccceeeeecC--CCCEEEeecc
Confidence 12222222 3466788899999999999998865332 1122222233444322 1111222222
Q ss_pred chHHHHHHHhcCC-CCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCHHH--HHHHHHHHHHHhcc
Q psy9576 176 TSPMQIRYSKINK-PPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSD--LKGVYLNFIRVFFE 242 (338)
Q Consensus 176 lsp~~l~~l~~~~-~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f~d--LKg~l~~ll~~lfg 242 (338)
|---..|.+.++. .-+|=|++++|||+..+. |+.++.+.++=++|...++.+ +..++..++...|.
T Consensus 989 Lr~pfar~vs~N~~~~~Kry~i~rVyr~~~~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~ 1057 (1351)
T KOG1035|consen 989 LRLPFARYVSRNSVLSFKRYCISRVYRPAIHN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILH 1057 (1351)
T ss_pred ccchHHHHhhhchHHHHHHhhhheeecccccC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 2223567776653 467889999999998643 999999999999988766544 44455555544433
No 118
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=90.10 E-value=1.7 Score=44.59 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=66.7
Q ss_pred cceEeccchHHHHH----HHh--cCCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEE-EcCCC---CHHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQIR----YSK--INKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLW-IDKNI---SFSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~l~----~l~--~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~-~g~~~---~f~dLKg~l~ 234 (338)
.-+||+-|--++.- ++. ++..|.-+-.+|++||++.. --.+.||.|++.=+ ++.+- .+..-.+...
T Consensus 138 ~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~ 217 (539)
T PRK14894 138 FAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARL 217 (539)
T ss_pred ceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEEeCCCchHHHHHHHHHHHH
Confidence 36899998877642 232 34679999999999999942 23567888777643 33322 2333444455
Q ss_pred HHHHHhccCCCeeEEEccCCCC-CCC-CceEEEEEeecCCCCCCCeeEeeee
Q psy9576 235 NFIRVFFESDNIQIRFRPSYFP-FTE-PSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~ps~fp-f~~-Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
.++..+ |.+...+||+...-. -.| .....|+.+. =. ..||+|+-|+-
T Consensus 218 ~fl~~i-Gi~~~~lrfr~h~~~ElAHYa~~~~D~e~~-~p-~~Gw~E~~Gia 266 (539)
T PRK14894 218 AWWEQI-GIPRSRITIYDVPPDELAHYSKRTFDLMYD-YP-NIGVQEIEGIA 266 (539)
T ss_pred HHHHHh-CCCHHHeeeeecCcHHhhhhhhccEEEEEE-CC-CCCeEEEEEee
Confidence 666777 873345777653111 111 2234455440 01 24899988764
No 119
>PRK09350 poxB regulator PoxA; Provisional
Probab=89.46 E-value=0.22 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.1
Q ss_pred EEEEEeechhHHHHHHcCCCcccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRL 325 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~ 325 (338)
|...||||+|||+|+..|+++||+
T Consensus 282 p~~G~giGidRL~m~~~g~~~Ird 305 (306)
T PRK09350 282 DCSGVALGVDRLIMLALGAESISE 305 (306)
T ss_pred CCCceEecHHHHHHHHcCCCCccc
Confidence 567899999999999999999996
No 120
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=89.15 E-value=0.21 Score=50.66 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=23.1
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...||||+|||+|+..|.++||+.
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv 438 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDV 438 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhh
Confidence 6778999999999999999999974
No 121
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=87.95 E-value=0.29 Score=49.71 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=23.0
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|+++||+.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv 441 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDA 441 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhh
Confidence 6789999999999999999999963
No 122
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=87.94 E-value=0.33 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.9
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.++||+.
T Consensus 471 P~gG~GiGiDRLvMlltg~~sIrdv 495 (505)
T PRK12445 471 PTAGLGIGIDRMIMLFTNSHTIRDV 495 (505)
T ss_pred CCCeEEEhHHHHHHHHcCCCchheE
Confidence 5678999999999999999999974
No 123
>PLN02502 lysyl-tRNA synthetase
Probab=87.58 E-value=0.34 Score=50.37 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=25.5
Q ss_pred hCCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 293 ~~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
.+|++ |.-.||||+|||+|+..|.+.||+.
T Consensus 514 eyGmP----P~gG~GiGiDRLvMlltg~~sIrdV 543 (553)
T PLN02502 514 EYGLP----PTGGWGLGIDRLVMLLTDSASIRDV 543 (553)
T ss_pred HcCCC----CCceEEehHHHHHHHHcCCcchhee
Confidence 35664 5678999999999999999999964
No 124
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=87.53 E-value=0.35 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.+.||+.
T Consensus 462 P~gG~GiGiDRLvMlltg~~~Irdv 486 (496)
T TIGR00499 462 PTGGLGIGIDRLVMLLTDSKSIRDV 486 (496)
T ss_pred CCceEEEhHHHHHHHHhCCCcHhee
Confidence 5678999999999999999999964
No 125
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=87.49 E-value=0.34 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.++||+.
T Consensus 457 P~gG~GiGiDRLvm~ltg~~~Irdv 481 (491)
T PRK00484 457 PTGGLGIGIDRLVMLLTDSPSIRDV 481 (491)
T ss_pred CCCeEEEeHHHHHHHHhCCCcHHhc
Confidence 5678999999999999999999974
No 126
>PLN02221 asparaginyl-tRNA synthetase
Probab=87.36 E-value=0.38 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=23.0
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...||||+|||+|+..|+++||+.
T Consensus 536 Ph~G~GlGiERLvm~l~g~~nIRdv 560 (572)
T PLN02221 536 KHCGFGLGFERMILFATGIDNIRDV 560 (572)
T ss_pred CCceEEEeHHHHHHHHcCCCchheE
Confidence 5778999999999999999999974
No 127
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=87.13 E-value=0.57 Score=49.09 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|-..+++|+|||+|+..|.+.||+.
T Consensus 528 ph~g~~~G~dr~~~~~~~~~~irdv 552 (588)
T PRK00476 528 PHGGIAFGLDRLVMLLAGADSIRDV 552 (588)
T ss_pred CCcceeccHHHHHHHHcCCccHHhe
Confidence 3457789999999999999999985
No 128
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=86.13 E-value=0.45 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|...+|||+|||+|+..|.+.||+.
T Consensus 551 PtgG~GiGIDRLvMlltg~~sIrdV 575 (585)
T PTZ00417 551 PTGGLGLGIDRITMFLTNKNCIKDV 575 (585)
T ss_pred CCceEEEcHHHHHHHHcCCcchhee
Confidence 5778999999999999999999964
No 129
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.20 E-value=1.2 Score=45.85 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=20.5
Q ss_pred eEEEEEeechhHHHHHHcCCCcccccc
Q psy9576 301 YIGFAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 301 ~~~~afelglerlam~~~~i~diR~~~ 327 (338)
..|.| +|||||+||..|-+.||+..
T Consensus 527 HgGiA--~GlDRlvmll~g~~sIReVI 551 (585)
T COG0173 527 HGGIA--FGLDRLVMLLTGAESIRDVI 551 (585)
T ss_pred Cccee--ccHHHHHHHHcCCCchhhee
Confidence 45666 56999999999999999853
No 130
>PLN02734 glycyl-tRNA synthetase
Probab=85.06 E-value=2.4 Score=45.06 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=35.5
Q ss_pred CcceEeccchHHHH----HHHh--cCCCCceEEEeeeEEEeCCC----CCCCcceeEEEE
Q psy9576 168 NKPLLRTHTSPMQI----RYSK--INKPPIKVITSGRVYRIDSD----STHSPMFHQIEG 217 (338)
Q Consensus 168 ~~~~LRt~lsp~~l----~~l~--~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~ 217 (338)
..-+||+=|--|+- +.+. ++..|.-+..||++||++.. --.+.||.|++.
T Consensus 247 ~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEi 306 (684)
T PLN02734 247 SVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEI 306 (684)
T ss_pred ccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhh
Confidence 34689998876662 3332 34679999999999999932 345678877664
No 131
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=84.46 E-value=1.9 Score=44.86 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCcceEeccchHHHH----HHHh--cCCCCceEEEeeeEEEeCCC----CCCCcceeEEEE
Q psy9576 167 NNKPLLRTHTSPMQI----RYSK--INKPPIKVITSGRVYRIDSD----STHSPMFHQIEG 217 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l----~~l~--~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~ 217 (338)
...-+||+=|--|+- +.+. ++..|.-+..+|++||++.. --.+.||.|+|.
T Consensus 154 ~~~~yLRPETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr~~l~R~REF~q~Ei 214 (551)
T TIGR00389 154 KRKGYLRPETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPRNGLFRVREFEQAEI 214 (551)
T ss_pred CcccccccccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcccceEEeehhhhchh
Confidence 344689998887663 2222 34679999999999999942 235678887765
No 132
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=83.61 E-value=0.61 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.8
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.+|||+|||+|+..|.+.||+.
T Consensus 532 PtgG~GIGIDRLvMlltg~~sIReV 556 (659)
T PTZ00385 532 PTAGWGMGIDRALMLLTNSSNIRDG 556 (659)
T ss_pred CCCceEEcHHHHHHHHcCCcchhhe
Confidence 5678999999999999999999974
No 133
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=82.72 E-value=1.1 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEeechhHHHHHHcCCCcccccc
Q psy9576 304 FAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 304 ~afelglerlam~~~~i~diR~~~ 327 (338)
-.+.+|+|||+|+..|.+.||+..
T Consensus 546 gG~a~G~dRlvm~l~~~~sirdvi 569 (706)
T PRK12820 546 GGIALGLDRVVSMILQTPSIREVI 569 (706)
T ss_pred CceeccHHHHHHHHcCCccHHHhc
Confidence 456678999999999999999853
No 134
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=80.95 E-value=0.85 Score=45.82 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=22.7
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|-..||||+|||.|-..|+++||+-
T Consensus 399 PHaGfGlG~ERlv~~i~gl~nIRea 423 (435)
T COG0017 399 PHAGFGLGLERLVMYILGLDNIREA 423 (435)
T ss_pred CCcccccCHHHHHHHHhCCCcceec
Confidence 5578999999999999999999974
No 135
>KOG1885|consensus
Probab=79.66 E-value=0.73 Score=46.40 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=29.6
Q ss_pred ecCHHHhhh--CCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 285 QVNPKVLCN--MNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 285 ~vhP~Vl~~--~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
++.-+-+.+ +|++ |+-.||||+|||+|+..+-..||+.
T Consensus 509 ~~De~Fc~ALEYGlP----PtgGwGmGIDRL~MllTds~~I~EV 548 (560)
T KOG1885|consen 509 MVDEDFCTALEYGLP----PTGGWGMGIDRLVMLLTDSNNIREV 548 (560)
T ss_pred cccHHHHHHHHcCCC----CCCccccchhhhhhhhcCCcchhhe
Confidence 445544443 6776 4679999999999999999999974
No 136
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=79.57 E-value=0.82 Score=46.47 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=29.3
Q ss_pred ecCHHHhhh--CCCCCCCeEEEEEeechhHHHHHHcCCCccccc
Q psy9576 285 QVNPKVLCN--MNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 285 ~vhP~Vl~~--~gi~~~~~~~~afelglerlam~~~~i~diR~~ 326 (338)
.+.-+-+.+ +|++ |+-.+|||+|||+|+..|-+-||+.
T Consensus 453 ~~Dedfv~ALeyGmP----PTgG~GiGIDRLvMllT~~~sIRdV 492 (502)
T COG1190 453 ELDEDFVEALEYGMP----PTGGLGIGIDRLVMLLTNSPSIRDV 492 (502)
T ss_pred ccCHHHHHHHhcCCC----CCCCccccHHHHHHHHcCCCchhhe
Confidence 444455554 5665 4678999999999999999999974
No 137
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=78.76 E-value=4.3 Score=41.71 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=36.5
Q ss_pred CCcceEeccchHHHHH----HH--hcCCCCceEEEeeeEEEeCCC----CCCCcceeEEEE
Q psy9576 167 NNKPLLRTHTSPMQIR----YS--KINKPPIKVITSGRVYRIDSD----STHSPMFHQIEG 217 (338)
Q Consensus 167 ~~~~~LRt~lsp~~l~----~l--~~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~ 217 (338)
....+||+-|--|+-- .+ .++..|+-+..+|++||++.. --.+.+|.|++.
T Consensus 158 ~~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEi 218 (558)
T COG0423 158 DSLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEI 218 (558)
T ss_pred CcceeecccccchhhhhhHHHHHHhccCCCeEEEeechhhccccCcccceeehhhhhhhhe
Confidence 3557899998877632 22 245789999999999999942 345668877664
No 138
>KOG0555|consensus
Probab=78.73 E-value=3.3 Score=41.06 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
..+.+.+|+.+-..||+||..|.++.....=. ...|.++-- +++-.+ |+.|---+++..-.
T Consensus 247 a~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGG-------------sTLFkldYy--GEeAyL--TQSSQLYLEtclpA-- 307 (545)
T KOG0555|consen 247 AALLRAMRDHYFERGYTEVTPPTMVQTQVEGG-------------STLFKLDYY--GEEAYL--TQSSQLYLETCLPA-- 307 (545)
T ss_pred HHHHHHHHHHHHhcCceecCCCceEEEEecCc-------------ceEEeeccc--Cchhhc--cchhHHHHHHhhhh--
Confidence 35678899999999999999998765432110 011332211 222222 22233234443211
Q ss_pred CceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 190 PIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 190 pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
--.+|+|..-||.+ + ...|+.++.|+++=+.. ++|.+|...|++|+
T Consensus 308 lgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~af--ltfd~ll~~iE~lv 355 (545)
T KOG0555|consen 308 LGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAF--LTFDDLLDRIEALV 355 (545)
T ss_pred cCceeEecHhhhhhhhhhhhhhhhheeeeeeccc--ccHHHHHHHHHHHH
Confidence 23788899999988 4 67899999999986654 88999998888876
No 139
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=64.96 E-value=3.8 Score=42.97 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.5
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|--.+++|+|||+|+..|-+.||+.
T Consensus 523 PhgG~alG~DRlvmlLt~~~sIRDV 547 (583)
T TIGR00459 523 PHAGFALGLDRLMMLLTGTDNIRDV 547 (583)
T ss_pred CcCceeccHHHHHHHHcCCCchhhe
Confidence 3456778999999999999999985
No 140
>KOG2509|consensus
Probab=64.92 E-value=43 Score=33.78 Aligned_cols=126 Identities=15% Similarity=0.277 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH----HHh
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR----YSK 185 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~----~l~ 185 (338)
+.+++..-+++...||.-+.+|.+... ..+.+-++-+. .-..-+|+..+ ..+..+.=|+=.|.-.- ++.
T Consensus 189 qALi~yal~~l~~kGy~pl~~P~i~rk-eVm~~cg~~~~----~d~~~~y~ld~--~~~~~LiaTaE~plAa~~~~e~~~ 261 (455)
T KOG2509|consen 189 QALINYALDFLNAKGYTPLTTPDILRK-EVMQKCGQLPR----FDEEQYYVLDG--GDEKYLIATAEQPLAAYHRDEWLE 261 (455)
T ss_pred HHHHHHHHHHHHHcCCccccCchhhhH-HHHHHhccCcC----CCcceEEeecC--CccceeEeeccchhhhhhcccccc
Confidence 455677778889999999999998665 45665554332 11123565554 23455666765553321 222
Q ss_pred cCCCCceEEEeeeEEEeCC-----CCC---CCcceeEEEEEEE-cCCCC---HHHHHHHHHHHHHHhccC
Q psy9576 186 INKPPIKVITSGRVYRIDS-----DST---HSPMFHQIEGLWI-DKNIS---FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~~~pirifeiG~Vyr~d~-----d~t---h~~~f~ql~~l~~-g~~~~---f~dLKg~l~~ll~~lfg~ 243 (338)
....|+|+..+.+|||.+. |.. ..++|..+|-+++ +.+-| |.++++.-+.|++.| |+
T Consensus 262 ~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsL-gi 330 (455)
T KOG2509|consen 262 EDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSL-GL 330 (455)
T ss_pred cccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHh-CC
Confidence 3467999999999999983 222 3456777776655 44323 677899999999999 85
No 141
>PF14860 DrrA_P4M: DrrA phosphatidylinositol 4-phosphate binding domain; PDB: 2WWX_B 3JZ9_A 3N6O_B 3JZA_B 3L0M_B 3L0I_C.
Probab=60.03 E-value=9.3 Score=31.32 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCCc---------chHHHHHHHhcCCChhHhhhhchhhHHHHHH
Q psy9576 5 KKLLIQAKIDFSTAVSISSLENAKSYYLGKN---------GKLTQYIKNIKNISINERKRYGEIINSIKIN 66 (338)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkk---------g~l~~l~~~l~~l~~eer~~~G~~~n~~k~~ 66 (338)
..|...++..|+.+.|+++|+++...|..+. |.+|..+ .++-.-.+++-+.+++.++.
T Consensus 48 t~IL~dfk~~L~~~~~~~~l~~~v~efk~~~EY~iL~~GQGl~Tk~~----gl~TSS~ra~~~mv~e~~~~ 114 (120)
T PF14860_consen 48 TKILLDFKDSLMEITTLQELKDKVKEFKQSPEYRILAKGQGLITKVF----GLKTSSVRAVEKMVEEARQD 114 (120)
T ss_dssp HHHHHHHHHHHCC--SHHHHHHHHHHHHTSCCCCCCCS-SSHHHHCC----T---HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcChHHHHHHhcccHHHHHh----CCcchHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999996654 4455333 34444455555555554443
No 142
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=55.89 E-value=7.2 Score=44.00 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.+|||+|||+|+..| ..||+.
T Consensus 1061 P~gG~GiGiDRLvM~ltg-~sIRdv 1084 (1094)
T PRK02983 1061 PTGGLGMGVDRLVMLLTG-RSIRET 1084 (1094)
T ss_pred CCCeEEeeHHHHHHHHhC-CChheE
Confidence 567899999999999999 499974
No 143
>KOG1637|consensus
Probab=48.03 E-value=38 Score=34.57 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCC--CCCCCcCccceeecCCccCCCcceEeccchHHHH
Q psy9576 104 GGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPK--NHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI 181 (338)
Q Consensus 104 G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~--~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l 181 (338)
-+.+-.+.+++-||.-....||+||.+|.+-+.. ...... .|-+.+| |.+... .+...|.+---|+..
T Consensus 190 ~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~----LWe~SGHwqnY~enm---F~~e~e---ke~~~LKPMNCPgHc 259 (560)
T KOG1637|consen 190 HGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKK----LWETSGHWQNYSENM---FKFEVE---KEEFALKPMNCPGHC 259 (560)
T ss_pred CcchHHHHHHHHHHHHHHhcCCceecCcchhhhh----hhhhccchhhhhhhc---eeeeec---hhhhccCccCCCccc
Confidence 3456788999999999999999999999874431 111000 0222222 322211 111233333333322
Q ss_pred HHH-----hcCCCCceEEEeeeEEEeC-C----CCCCCcceeEEEEEEE-cCCCCHHHHHHHHHHH
Q psy9576 182 RYS-----KINKPPIKVITSGRVYRID-S----DSTHSPMFHQIEGLWI-DKNISFSDLKGVYLNF 236 (338)
Q Consensus 182 ~~l-----~~~~~pirifeiG~Vyr~d-~----d~th~~~f~ql~~l~~-g~~~~f~dLKg~l~~l 236 (338)
-.. +-+..|+|+-..|-+-|++ + ..|+...|+|=++-+. -.+---.++|+.++.+
T Consensus 260 Lmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl 325 (560)
T KOG1637|consen 260 LMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFL 325 (560)
T ss_pred cccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHH
Confidence 111 1145799999999999998 4 3688888987665443 2222235566666543
No 144
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=45.02 E-value=68 Score=24.81 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.0
Q ss_pred Ch-HHHHHHHHHHHHhhCCC
Q psy9576 107 HP-IMRTLERIEKIFYSIGF 125 (338)
Q Consensus 107 hp-~~~~~~~Ir~~~~~~GF 125 (338)
|| +..+.+.|-+.|++||.
T Consensus 66 HP~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 66 HPKLAGILRNIMDSLANMGI 85 (85)
T ss_pred CCcHHHHHHHHHHHHHHCCC
Confidence 66 47889999999999995
No 145
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=43.78 E-value=53 Score=28.06 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=42.8
Q ss_pred HhcCCCHHHHHHHHHHhcCCcchHHHHHHHhc-CCChhHhhhhchhhHHHHHHHHHHHHH
Q psy9576 15 FSTAVSISSLENAKSYYLGKNGKLTQYIKNIK-NISINERKRYGEIINSIKINIKKELNI 73 (338)
Q Consensus 15 i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~-~l~~eer~~~G~~~n~~k~~~~~~~~~ 73 (338)
++..-+.+++-.+|+-.=|.=|.+..-|..|- ++++++|++.-+...++++.++++=.+
T Consensus 55 Lk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~A 114 (142)
T TIGR03042 55 LASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEA 114 (142)
T ss_pred HHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667788888888887777666654 479999999998888888887665444
No 146
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=42.03 E-value=26 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=30.4
Q ss_pred CcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHH
Q psy9576 34 KNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNI 73 (338)
Q Consensus 34 kkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~ 73 (338)
|+-.+++|-+.|+++|++||.+. ++..++.++++.++
T Consensus 3 k~efL~~L~~~L~~lp~~e~~e~---l~~Y~e~f~d~~~~ 39 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEEEREEI---LEYYEEYFDDAGEE 39 (181)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHHHHhhhC
Confidence 55678899999999999999775 78888888887764
No 147
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.68 E-value=72 Score=32.30 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=40.5
Q ss_pred eEEEccC----CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHc
Q psy9576 247 QIRFRPS----YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRY 318 (338)
Q Consensus 247 ~~r~~ps----~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~ 318 (338)
++.+.|+ --=||..-+|+...- . + ..--|+|-|.-. ...+.+|-. ..|++.|.+|+|||..+..
T Consensus 257 ~~~id~~lvRGLDYYtg~VFE~~~~~---~-~-~~~sI~gGGRYD-~Lv~~~gG~--~~pavGFaiGveRl~~~l~ 324 (429)
T COG0124 257 SYEIDPSLVRGLDYYTGTVFEAVTDG---L-G-AQGSVCGGGRYD-GLVEEFGGK--PTPAVGFAIGVERLILALE 324 (429)
T ss_pred CEEEccceecchhhccceEEEEEEcC---C-c-cccceecCccch-HHHHHhCCC--CCCceeEehHHHHHHHHHH
Confidence 3666665 122666667775421 1 1 122678888887 455666644 2799999999999986654
No 148
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=40.54 E-value=2.2e+02 Score=23.86 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=45.1
Q ss_pred CCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHhhCCC
Q psy9576 47 NISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHP-IMRTLERIEKIFYSIGF 125 (338)
Q Consensus 47 ~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~tlp~~~~~~G~~hp-~~~~~~~Ir~~~~~~GF 125 (338)
.++++++....+.++...+.++.........+........ .| ..++...|.++....||
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~--------------------~~i~~~i~~~v~~~a~~~g~ 131 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELL--------------------QPIQKKINKAVEEYAKENGY 131 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHTT-
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999888888888887777754332211 12 24567778888889999
Q ss_pred eEeeC
Q psy9576 126 DITDG 130 (338)
Q Consensus 126 ~Ev~~ 130 (338)
..|..
T Consensus 132 ~~Vl~ 136 (158)
T PF03938_consen 132 DLVLD 136 (158)
T ss_dssp SEEEE
T ss_pred eEEEe
Confidence 99854
No 149
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=40.07 E-value=91 Score=31.31 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=41.7
Q ss_pred eEEEccC---CCC-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHc
Q psy9576 247 QIRFRPS---YFP-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRY 318 (338)
Q Consensus 247 ~~r~~ps---~fp-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~ 318 (338)
.+.+.++ -+. ||.+-+|+.+.. .. ..+ .|++-|-.. ..+..+|=. ..|+++|.+|+|||.++.-
T Consensus 249 ~~~~Dl~lvRgldYYTG~vFE~~~~~--~~-~~~--~i~gGGRYD-~L~~~fg~~--~~PavGfa~g~erl~~~l~ 316 (430)
T CHL00201 249 PYKINYKLVRGLDYYNDTAFEIKTLS--SN-GQD--TICGGGRYD-SLIHQLGGP--KTPAVGCAIGLERLLLIAK 316 (430)
T ss_pred cEEECcccccCCccccccEEEEEECC--CC-Ccc--eeeeccchH-HHHHHhCCC--CCCeeEEEecHHHHHHHHh
Confidence 4667765 334 554557765421 11 224 367779998 677788632 2789999999999987763
No 150
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=39.64 E-value=1.6e+02 Score=27.76 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
+.++-.+.++-+..|......+.++-... | .+|. + .+|++ +..
T Consensus 3 Q~iI~~Lq~fW~~~GC~i~qPyD~EvGAG------------------T---~hPa-----T---------flr~L--gpe 45 (279)
T cd00733 3 QDLILKLQKFWASQGCLIIQPYDMEVGAG------------------T---FHPA-----T---------FLRAL--GPE 45 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEcCcccccccc------------------c---CCHH-----H---------HHHhc--CCC
Confidence 56777888888999988776665532210 0 1231 1 22333 244
Q ss_pred CceEEEeeeEEEeCC-C----CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCce
Q psy9576 190 PIKVITSGRVYRIDS-D----STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPSA 262 (338)
Q Consensus 190 pirifeiG~Vyr~d~-d----~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps~ 262 (338)
|.++-.+-.+.|+.. . +..+-.++|.-.++--... ++..+--.=++.+ |++ .-++||+.+. |-.|+.
T Consensus 46 pw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQViiKPsP~---niQelYL~SL~~l-Gid~~~hDIRFVEDn--WEsPTL 119 (279)
T cd00733 46 PWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPD---NIQELYLESLEAL-GINPKEHDIRFVEDN--WESPTL 119 (279)
T ss_pred cceeccccCCCCCCCCCcCCCchhhhhheeeEEEECCCCc---cHHHHHHHHHHHh-CCCccccCeeEeecC--CCCCcc
Confidence 667776777777752 1 3444455788766644333 3444333445666 761 1246776543 555654
Q ss_pred EEEEEeecCCCCCCCeeEeeeeecCHH--Hhh-hCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccCC
Q psy9576 263 EIDIVFQDGPLKGNWLEISGAGQVNPK--VLC-NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGN 330 (338)
Q Consensus 263 e~~i~~~~g~~~~gwieig~~G~vhP~--Vl~-~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~d 330 (338)
.+. +.|| ||=--||==-+ ..+ -.|++....+ .-..-|||||||-.-|++++-++-=||
T Consensus 120 GAw--------GLGW-EVWldGMEITQFTYFQQvGGi~~~pv~-~EiTYGLERiamylQ~vd~v~dl~w~~ 180 (279)
T cd00733 120 GAW--------GLGW-EVWLDGMEVTQFTYFQQVGGIPCKPIS-VEITYGLERIAMYLQGVDNVYDIEWNK 180 (279)
T ss_pred ccc--------cccc-EEEECCeeeeeeeeeeeeCCeeccccc-eeeehhHHHHHHHHhCCCceeccccCC
Confidence 332 3455 44333431111 112 2355532222 233458999999999999987764443
No 151
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=38.96 E-value=1.8e+02 Score=23.40 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHhcCCCHHH----HHHHHHHhcCCcchHHHHHH-HhcCCChhHhhhhchhhHHHHHHHHHHHH
Q psy9576 2 NELKKLLIQAKIDFSTAVSISS----LENAKSYYLGKNGKLTQYIK-NIKNISINERKRYGEIINSIKINIKKELN 72 (338)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~----l~~~~~~~lGkkg~l~~l~~-~l~~l~~eer~~~G~~~n~~k~~~~~~~~ 72 (338)
+.++.+.+.+.+.++...|..+ +-.....++..+..++.++. ++...+++-+..+-+......+.+++.++
T Consensus 3 ~~~~~~~~~i~~~~~~~~~~~ekL~~~i~~~~~~~~~~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~i~~iI~ 78 (133)
T PF08359_consen 3 EKMNRFLERIEEAIADESSPEEKLRALIEAHLDFLEENPDLAIVLSLELRQSNEELRKKINEIRREYLRIIEEIIE 78 (133)
T ss_dssp HHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHT-HHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888877665443 33334556666666665543 45555555444433333333333333333
No 152
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=35.95 E-value=1.2e+02 Score=29.99 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHhccCCCeeEEEccCC---CC-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCC
Q psy9576 225 SFSDLKGVYLNFIRVFFESDNIQIRFRPSY---FP-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300 (338)
Q Consensus 225 ~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~---fp-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~ 300 (338)
.+.+|+.+++.+ +.+ |. ...+.|.|+. +. ||..-+|+.. . +.+. .|++-|.-. ..+..||-+
T Consensus 238 ~l~~L~~l~~~l-~~~-~~-~~~i~~D~~lvrgl~YYtG~vFe~~~---~---~~~~-~i~~GGRYD-~L~~~fg~~--- 303 (391)
T PRK12292 238 ALDELEALAEAL-EKY-GY-GIPLSLDLGLLRHLDYYTGIVFEGYV---D---GVGN-PIASGGRYD-DLLGRFGRA--- 303 (391)
T ss_pred HHHHHHHHHHHH-HHh-CC-CceEEEehhhccCCcCccceEEEEEE---C---CCCC-cccCCcchh-hHHHHcCCC---
Confidence 345566665555 333 54 3457777763 23 4433355543 1 2222 377778877 466778754
Q ss_pred eEEEEEeechhHHHHH
Q psy9576 301 YIGFAFGSGLERLTML 316 (338)
Q Consensus 301 ~~~~afelglerlam~ 316 (338)
.|++.|.+++|||..+
T Consensus 304 ~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 304 RPATGFSLDLDRLLEL 319 (391)
T ss_pred CCCceEEeeHHHHHhh
Confidence 6899999999999985
No 153
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=34.35 E-value=2e+02 Score=27.19 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+.++-.+.++.+..|......+.++-... | .+|. + .+|++ +.
T Consensus 6 fQ~iI~~Lq~fWa~~GC~i~qPyD~EvGAG------------------T---~~P~-----T---------flr~L--gp 48 (283)
T PRK09348 6 FQDIILTLQDYWADQGCVILQPYDMEVGAG------------------T---FHPA-----T---------FLRAL--GP 48 (283)
T ss_pred HHHHHHHHHHHHHHCCCEEECCcccccccc------------------c---CCHH-----H---------HHHhc--CC
Confidence 467788888999999988877666532210 0 1231 1 22333 23
Q ss_pred CCceEEEeeeEEEeCC-----CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCc
Q psy9576 189 PPIKVITSGRVYRIDS-----DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPS 261 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-----d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps 261 (338)
.|.++-.+-.+.|+.. .+..+-.++|.-.++--..- ++..+--.=++.+ |++ .-++||+.+. |-.|+
T Consensus 49 epw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQVilKPsP~---niQelYL~SL~~l-Gid~~~hDIRFVEDn--WEsPT 122 (283)
T PRK09348 49 EPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVILKPSPD---NIQELYLGSLEAL-GIDPLEHDIRFVEDN--WESPT 122 (283)
T ss_pred CccccccccCCCCCCCCCcCCCchhhhhheeeEEEEcCCCc---cHHHHHHHHHHHh-CCCccccceeEeecC--CCCCc
Confidence 4666666666777752 13344455788766644333 3444444445676 862 1246776543 55565
Q ss_pred eEEEEEeecCCCCCCCeeEeeeeecCHH--Hhh-hCCCCCCCeEEEEEeechhHHHHHHcCCCccccccc
Q psy9576 262 AEIDIVFQDGPLKGNWLEISGAGQVNPK--VLC-NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYK 328 (338)
Q Consensus 262 ~e~~i~~~~g~~~~gwieig~~G~vhP~--Vl~-~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~ 328 (338)
..+. +.|| ||=.-||==-+ ..+ -.||+....+ .-..-|||||||-.-|++++-++-=
T Consensus 123 LGAw--------GlGW-EVWldGMEITQFTYFQQvGGi~~~pv~-~EITYGLERiamylQ~vd~v~dl~w 182 (283)
T PRK09348 123 LGAW--------GLGW-EVWLDGMEVTQFTYFQQVGGIECKPVT-GEITYGLERLAMYLQGVDNVYDLVW 182 (283)
T ss_pred cccc--------ccce-EEEECCeeeeeeeeeeeeCCeeccccc-eeeehhHHHHHHHHhCCCceeeeec
Confidence 4332 3455 43333331111 112 1355532222 2334589999999999999876643
No 154
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=34.09 E-value=19 Score=34.50 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.4
Q ss_pred EEEEEeechhHHHHHHcCCCcccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRL 325 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~ 325 (338)
+...+|||.+||+|+..|...|..
T Consensus 272 ~TiGgGIGqsRL~M~LL~k~HIgE 295 (309)
T cd00645 272 QTIGGGIGQSRLCMFLLQKAHIGE 295 (309)
T ss_pred ccccccccHHHHHHHHhccchhcc
Confidence 367899999999999999998885
No 155
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=33.81 E-value=2.3e+02 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhcCCCh-hHhhhhchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy9576 22 SSLENAKSYYLGKNGKLTQYIKNIKNISI-NERKRYGEIINSIKINIKKELNIHRDILKKKQ 82 (338)
Q Consensus 22 ~~l~~~~~~~lGkkg~l~~l~~~l~~l~~-eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~ 82 (338)
.+++.+=..++| |.+..+..+|.+-.- ..=.++++....+++.|+.-++++...|+..+
T Consensus 139 ~~~e~lv~~s~g--~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a 198 (229)
T PF11101_consen 139 QAIEQLVQESMG--SILQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEMEAQAQELEQKA 198 (229)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888 889999988853322 22346888899999999999999888887644
No 156
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=33.72 E-value=2.3e+02 Score=26.93 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+.++-.+.++.+..|......+.++-... | .+|. + .+|++ +.
T Consensus 3 fQ~iI~~Lq~fWa~~GC~i~QPyD~EvGAG------------------T---~hPa-----T---------flral--gp 45 (293)
T TIGR00388 3 FQGLILKLQEYWANQGCLIVQPYDMEKGAG------------------T---MHPM-----T---------FLRSL--GP 45 (293)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccccccc------------------c---CCHH-----H---------HHHhc--CC
Confidence 356777888889999988776665532210 0 1231 1 22333 24
Q ss_pred CCceEEEeeeEEEeCC-----CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCc
Q psy9576 189 PPIKVITSGRVYRIDS-----DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPS 261 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-----d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps 261 (338)
.|.++-.+-.+.|+.. .+..+-.++|.-.++--.. .++..+--.=++.+ |++ .-++||+.+. |-.|+
T Consensus 46 epw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQVilKPsP---~niQelYL~SL~~l-Gid~~~hDIRFVEDn--WEsPT 119 (293)
T TIGR00388 46 EPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQVVIKPSP---DNIQELYLDSLRAL-GIDPTEHDIRFVEDN--WENPT 119 (293)
T ss_pred CcceeccccCCCCCCCCCCCCCchhhhheeeeEEEECCCC---ccHHHHHHHHHHHh-CCCccccCeeEeecC--CCCCc
Confidence 4667766777777752 1334445578876664333 33444444445676 861 1246776543 55555
Q ss_pred eEEEEEeecCCCCCCCeeEeeeeecCHH--Hhh-hCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 262 AEIDIVFQDGPLKGNWLEISGAGQVNPK--VLC-NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 262 ~e~~i~~~~g~~~~gwieig~~G~vhP~--Vl~-~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
..+. +.|| ||=--||==-+ ..+ -.||+..-.+ .-..-|||||||-.-|++++-++-=|
T Consensus 120 LGAw--------GlGW-EVWldGMEITQFTYFQQvGGi~~~pv~-~EITYGLERiaMylQ~vd~v~dl~w~ 180 (293)
T TIGR00388 120 LGAW--------GLGW-EVWLDGMEVTQFTYFQQVGGLECKPVS-VEITYGLERLAMYIQGVENVYDLEWS 180 (293)
T ss_pred cccc--------cccc-EEEECCeeeeeeeeeeeeCCeeccccc-eeeehhHHHHHHHHhCCCeeeeeeec
Confidence 4332 3455 43333331111 112 2355532111 23345899999999999999855333
No 157
>KOG2324|consensus
Probab=32.66 E-value=32 Score=33.98 Aligned_cols=129 Identities=12% Similarity=0.119 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc---chHHHHHH
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH---TSPMQIRY 183 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~---lsp~~l~~ 183 (338)
..+.++.+.|+.-|.+.|-+.+.-|.+++.. -.++-+.=+ ..-.+-|.+.+. .....+|-++ -..-++.+
T Consensus 53 R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~-LWekTgRw~----~~gsEl~rl~Dr--~gkq~cL~pThEE~iT~lmat 125 (457)
T KOG2324|consen 53 RVLNKLCRLLDNEMQSGGAQKISLPILSSKE-LWEKTGRWD----AMGSELFRLHDR--KGKQMCLTPTHEEDITALMAT 125 (457)
T ss_pred HHHHHHHHHHHHHHHhccCeeEeecccChHH-HHHhcCccc----ccchhheEeecc--CCCEeccCCchHHHHHHHHHh
Confidence 3467888899999999999999999886642 222211100 000122444333 1122333332 11222222
Q ss_pred H---hcCCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 184 S---KINKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 184 l---~~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
. +....|+++|-+|+=||.+-. --.-.+|.+=+.+--+.+ -++..+..+-+.+++.+ |.
T Consensus 126 ~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL-~~ 196 (457)
T KOG2324|consen 126 YIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQL-GL 196 (457)
T ss_pred cCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 234679999999999988721 111123332222222211 36778888888888888 76
No 158
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=32.55 E-value=2.4e+02 Score=26.54 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 207 THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 207 th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
..+-.+||.-.++--..-++-+| --.=++.+ |++ .-++||..+ .|-.|+.-+. +.|| ||=.-|
T Consensus 73 NRlq~yyQfQVilKPsP~NiQeL---YL~SL~~l-Gid~~~HDIRFVED--nWE~PTlGaw--------GlGW-EVWldG 137 (298)
T COG0752 73 NRLQHYYQFQVIIKPSPDNIQEL---YLGSLEAL-GIDPLEHDIRFVED--NWENPTLGAW--------GLGW-EVWLDG 137 (298)
T ss_pred hhhhhheeEEEEecCCCccHHHH---HHHHHHHc-CCChhhcceeeecc--CCCCCccccc--------ccce-eEEEcC
Confidence 33344578776665444444433 33334666 761 124677654 2555654332 4466 444444
Q ss_pred ecCHH--Hhh-hCCCCCCCeEEEEEe--echhHHHHHHcCCCcccccccC
Q psy9576 285 QVNPK--VLC-NMNLDPEKYIGFAFG--SGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 285 ~vhP~--Vl~-~~gi~~~~~~~~afe--lglerlam~~~~i~diR~~~~~ 329 (338)
|==-+ -.+ -.||+.. | ++.| -|||||||-.-|++.+-++-=|
T Consensus 138 MEvTQFTYFQQvGGiec~--p-V~~EITYGlERlAmYiQ~vdnVydl~W~ 184 (298)
T COG0752 138 MEVTQFTYFQQVGGLECK--P-VSGEITYGLERLAMYIQGVDNVYDLEWN 184 (298)
T ss_pred eeeeeeehhhhhCCeecc--c-eeeeeehhHHHHHHHHhCccceeEEeec
Confidence 42111 122 2466542 2 2334 4899999999999999877443
No 159
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=32.33 E-value=1.5e+02 Score=27.90 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=37.2
Q ss_pred eeEEEccCCCC---CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 246 IQIRFRPSYFP---FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 246 ~~~r~~ps~fp---f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
..+.+.|+..+ |. -|.-..+++ .+ .+- .|++-|.-+ ..+..+|-+ .|.+.|.+++|||
T Consensus 251 ~~i~~D~~~~r~~~YY-tG~vFe~~~-~~---~~~-~ia~GGRYD-~L~~~fg~~---~~AvGfai~ld~L 311 (311)
T PF13393_consen 251 IKIIFDLSLVRGLDYY-TGIVFEVYA-PG---RGS-PIAGGGRYD-NLLEQFGKP---IPAVGFAIGLDRL 311 (311)
T ss_dssp TTEEEETT-GTSSTTE-ESEEEEEEE-TT---SSS-ESEEEEEET-THHHHTTSS----EEEEEEEEHHHH
T ss_pred ceEEEChhhccchhhc-CCEEEEEEE-cC---CCc-eEecccChh-HHHHHhCCC---CceEEEEEEeccC
Confidence 46778887543 22 244444444 22 222 788889998 577778754 7999999999997
No 160
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.79 E-value=1.3e+02 Score=29.42 Aligned_cols=112 Identities=12% Similarity=0.089 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCC-cchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhh--
Q psy9576 6 KLLIQAKIDFSTAVSISSLENAKSYYLGK-NGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQ-- 82 (338)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~l~~~~~~~lGk-kg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~-- 82 (338)
+|++..+.=.+++..+.++++-..+-+.+ |-.+..+.+.|+++.+....+- ++.-+++++-+.+++..+.+-+
T Consensus 15 ~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~----~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 15 ELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEE----RELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhH----HHHHHHHHHHHHHHHhhHHHHHhh
Confidence 33334443444455555555555555553 3456666666666633222222 2222333333444444443222
Q ss_pred ------HHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q psy9576 83 ------LKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFY 121 (338)
Q Consensus 83 ------~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~ 121 (338)
.--++--.++++|++.......-.....++...+.-++.
T Consensus 91 LPkkNGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l 135 (330)
T PF07851_consen 91 LPKKNGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILL 135 (330)
T ss_pred CCCCCCcccceecccccceecccccccchhhhHHHHHHHHHHHHH
Confidence 111223346788888766666667777777766665554
No 161
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=30.68 E-value=24 Score=34.08 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
+...+|||.+||+|+..|...|.+.
T Consensus 289 ~TiGGGIGqsRL~MfLL~k~HIgEV 313 (330)
T TIGR00669 289 QTIGGGIGQSRLAMLLLQLKHIGEV 313 (330)
T ss_pred ccccccccHHHHHHHHhccccccce
Confidence 4678999999999999999988753
No 162
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.46 E-value=2.2e+02 Score=24.33 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHH
Q psy9576 22 SSLENAKSYYLGKNGKLTQYIK 43 (338)
Q Consensus 22 ~~l~~~~~~~lGkkg~l~~l~~ 43 (338)
++-..+|.+...|+.+|..|+.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~ 82 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLT 82 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4457889999999988888865
No 163
>PF11015 DUF2853: Protein of unknown function (DUF2853); InterPro: IPR021274 This bacterial family of proteins has no known function. ; PDB: 2PYQ_B.
Probab=29.75 E-value=42 Score=26.98 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.3
Q ss_pred HhcCCCHHHHHHHHHHhcCCc
Q psy9576 15 FSTAVSISSLENAKSYYLGKN 35 (338)
Q Consensus 15 i~~~~~~~~l~~~~~~~lGkk 35 (338)
+-++++.+||+.+|..||.||
T Consensus 37 ~Vs~Sd~~ELe~Vk~nfl~KK 57 (102)
T PF11015_consen 37 LVSCSDPKELERVKENFLIKK 57 (102)
T ss_dssp B--TT-HHHHHHHHHHCCCCC
T ss_pred hhccCCHHHHHHHHHhHHHHH
Confidence 335789999999999999877
No 164
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=29.56 E-value=25 Score=34.04 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
+...+|||.+||+|+..+..-|...
T Consensus 282 ~TiGgGIGqsRL~M~LL~k~HIgEV 306 (327)
T PRK05425 282 LTIGGGIGQSRLCMLLLQKAHIGEV 306 (327)
T ss_pred CcccccccHHHHHHHHhccchhccc
Confidence 4678999999999999998888753
No 165
>PTZ00213 asparagine synthetase A; Provisional
Probab=29.26 E-value=27 Score=33.98 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.7
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
+...+|||.+||+|+..+...|.+.
T Consensus 308 ~TiGGGIGqsRL~M~LL~k~HIgEV 332 (348)
T PTZ00213 308 QTIGGGIGQSRLCMFMLRKKHIGEV 332 (348)
T ss_pred CcccccccHHHHHHHHhCcchhcce
Confidence 3678999999999999999888753
No 166
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=29.10 E-value=1.8e+02 Score=28.73 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCeeEEEccCC---CC-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCC-CCCCCeEEEEEe
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSY---FP-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMN-LDPEKYIGFAFG 307 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~---fp-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~g-i~~~~~~~~afe 307 (338)
|..+++.+ | ..+.|.|+. ++ ||-+-+++.. .+. +.--.|++-|..+ ..+..|| -+ .|++.|.
T Consensus 235 l~~~l~~~-~---~~i~~Dl~~~r~l~YYtG~vFe~~~---~~~--g~~~~i~~GGRYD-~L~~~f~~~~---~pavGfs 301 (412)
T PRK00037 235 LKELLDAL-G---IPYVIDPRLVRGLDYYTGTVFEFVT---DDL--GAQGTVCGGGRYD-GLVEQFGGPP---TPAVGFA 301 (412)
T ss_pred HHHHHHHc-C---CCEEECCCcccChhhccceEEEEEE---CCC--Cccceeeeccchh-HHHHHhCCCC---CceEEEE
Confidence 33344454 6 346787774 33 5555555543 111 1112688889888 6778887 43 6899999
Q ss_pred echhHHHHHH
Q psy9576 308 SGLERLTMLR 317 (338)
Q Consensus 308 lglerlam~~ 317 (338)
+++|||..+.
T Consensus 302 ~~le~l~~~l 311 (412)
T PRK00037 302 IGVERLLLLL 311 (412)
T ss_pred EcHHHHHHHH
Confidence 9999997644
No 167
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=28.19 E-value=2.2e+02 Score=28.26 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhccCCCeeEEEccC---CCC-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCe
Q psy9576 226 FSDLKGVYLNFIRVFFESDNIQIRFRPS---YFP-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKY 301 (338)
Q Consensus 226 f~dLKg~l~~ll~~lfg~~~~~~r~~ps---~fp-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~ 301 (338)
+.+|+.+++.+- .+ +. ...+.+.++ .+. ||..-+++... +.+. .|++-|.-. ..+..||-+ .
T Consensus 246 l~~L~~l~~~l~-~~-~~-~~~~~~DlslvrgldYYTG~vFe~~~~------~~~~-~i~~GGRYD-~L~~~fg~~---~ 311 (392)
T PRK12421 246 LDELKTLAAHLK-NR-WP-ELPVSIDLAELRGYHYHTGLVFAAYIP------GRGQ-ALARGGRYD-GIGEAFGRA---R 311 (392)
T ss_pred HHHHHHHHHHHH-hh-CC-CceEEEeeccccCCCCcCCCEEEEEEC------CCCC-cccCCCCcc-chhHhhCCC---C
Confidence 455555555542 22 22 234555554 233 55555666431 1121 477778877 455677754 6
Q ss_pred EEEEEeechhHHHHHH
Q psy9576 302 IGFAFGSGLERLTMLR 317 (338)
Q Consensus 302 ~~~afelglerlam~~ 317 (338)
|++.|.+|+|||..+.
T Consensus 312 pAvGfai~lerL~~~l 327 (392)
T PRK12421 312 PATGFSMDLKELLALQ 327 (392)
T ss_pred CCceEEeeHHHHHhhc
Confidence 8999999999998764
No 168
>KOG2411|consensus
Probab=27.44 E-value=50 Score=34.01 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEEEeechhHHHHHHcCCCcccccc
Q psy9576 301 YIGFAFGSGLERLTMLRYGIDDLRLFY 327 (338)
Q Consensus 301 ~~~~afelglerlam~~~~i~diR~~~ 327 (338)
..|+| +|+|||+++..|-+.||+..
T Consensus 568 HGGiA--lGlDRlvaml~~a~sIRDVI 592 (628)
T KOG2411|consen 568 HGGIA--LGLDRLVAMLTGAPSIRDVI 592 (628)
T ss_pred CCcee--ecHHHHHHHHcCCCchheee
Confidence 34555 77999999999999999864
No 169
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=27.37 E-value=31 Score=32.46 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKP 189 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~ 189 (338)
+.++..+.++-+..|......+.++-... | .+|. +.|| ++ +..
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~evGAG------------------T---~~P~-----Tflr---------~L--gpe 44 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIEVGAG------------------T---FHPA-----TFLR---------AL--GPE 44 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS--SSG------------------G---GSHH-----HHTT---------TS--SSS
T ss_pred HHHHHHHHHHHHHCCCEEECCcccccccc------------------c---CCHH-----HHHH---------hc--CCC
Confidence 56777888888888888776665532210 0 1221 2222 11 356
Q ss_pred CceEEEeeeEEEeC-C----CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCce
Q psy9576 190 PIKVITSGRVYRID-S----DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPSA 262 (338)
Q Consensus 190 pirifeiG~Vyr~d-~----d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps~ 262 (338)
|.++-.+-.+.|+. . .+..+-.+||.-.++--..-+ +..+--.=++.+ |++ .-++||+.+. |-.|+.
T Consensus 45 pw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVilKPsP~n---iq~lYL~SL~~l-GId~~~hDIRFVEDn--WEsPtL 118 (284)
T PF02091_consen 45 PWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVILKPSPDN---IQELYLESLEAL-GIDPKEHDIRFVEDN--WESPTL 118 (284)
T ss_dssp -EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEEES--TT---HHHHHHHHHHHC-T--CCCS-EEEEEE---EEETTT
T ss_pred CccccccccCCCCCCCccCCCchHhhhhheeEEEEcCCCcc---HHHHHHHHHHHh-CCCccccceeEeecC--CCCCcc
Confidence 88998899999986 2 245555667888777544344 333333335666 761 2247776542 333432
Q ss_pred EE-----EEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCccccc-ccCC
Q psy9576 263 EI-----DIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF-YKGN 330 (338)
Q Consensus 263 e~-----~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~-~~~d 330 (338)
.+ .|.| +| +||-.+=-.. +-.||+....+ .-..-|||||||..-|++++-++ |.+.
T Consensus 119 GAwGlGWEVWl-dG------MEITQfTYFQ----QvGGi~~~pv~-~EITYGLERiamylQ~vdnv~dl~w~~~ 180 (284)
T PF02091_consen 119 GAWGLGWEVWL-DG------MEITQFTYFQ----QVGGIDCKPVS-VEITYGLERIAMYLQGVDNVYDLIWNDG 180 (284)
T ss_dssp TEEEEEEEEEE-TT------CEEEEEEEEE----EETTEE-SS---EEEEEEHHHHHHHHCT-SSGGGSEEEEE
T ss_pred cccccccEEEE-CC------EEEEEeeeee----eeCCccccccc-eehhhhHHHHHHHHhCCCeeEeeeecCC
Confidence 22 2223 11 1222221000 11244332222 23355899999999999999988 6543
No 170
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=26.03 E-value=5.8e+02 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCc
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPE 132 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~ 132 (338)
....++||+.|..+|+.+.+++.
T Consensus 434 f~~AD~IRd~L~~~Gi~v~D~~~ 456 (463)
T PRK00260 434 FALADAIRDELAALGIVLEDTPD 456 (463)
T ss_pred HHHHHHHHHHHHHCCcEEEEcCC
Confidence 57789999999999999998765
No 171
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=26.01 E-value=1.5e+02 Score=21.76 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEE
Q psy9576 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDI 266 (338)
Q Consensus 232 ~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i 266 (338)
-|+.+|+..||.+.+.++-+| -..-|+||.+
T Consensus 4 klq~yLr~~f~n~~i~v~~rp----k~~dsaEV~~ 34 (63)
T PF11324_consen 4 KLQAYLRRTFGNPGITVKARP----KKDDSAEVYI 34 (63)
T ss_pred HHHHHHHHHhCCCceEEEcCC----CCCCceEEEe
Confidence 478889998985334444343 2223577775
No 172
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=25.67 E-value=3e+02 Score=26.20 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhccCCCeeEEEccCC---CC-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCe
Q psy9576 226 FSDLKGVYLNFIRVFFESDNIQIRFRPSY---FP-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKY 301 (338)
Q Consensus 226 f~dLKg~l~~ll~~lfg~~~~~~r~~ps~---fp-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~ 301 (338)
+.+|+.+++.+ +.+ |. ...+.+.++. +. || |.-..+++ .+. + -.|++-|.-. ..+++||-+ .
T Consensus 231 l~~l~~~~~~l-~~~-~~-~~~i~~D~~~~r~~~YYt--GivFe~~~-~~~---~-~~i~~GGRYD-~L~~~fg~~---~ 296 (314)
T TIGR00443 231 LDELEAVLELL-EAR-GV-EEYISLDLGLVRGYHYYT--GLIFEGYA-PGL---G-APIAGGGRYD-NLLGRFGRP---L 296 (314)
T ss_pred HHHHHHHHHHH-HHh-CC-CCeEEEecccccCCCCcc--ceEEEEEE-CCC---C-CcccCCccHH-HHHHHcCCC---C
Confidence 34444444443 344 64 3336676663 23 44 43334433 111 1 1577778887 466778743 6
Q ss_pred EEEEEeechhHHHHHH
Q psy9576 302 IGFAFGSGLERLTMLR 317 (338)
Q Consensus 302 ~~~afelglerlam~~ 317 (338)
|.+.|.+++|||..+.
T Consensus 297 ~AvGfa~~~d~l~~~l 312 (314)
T TIGR00443 297 PATGFALNLERLLEAL 312 (314)
T ss_pred CCceEEecHHHHHHHh
Confidence 7899999999998653
No 173
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=25.38 E-value=1.7e+02 Score=28.31 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhcCCcc-hHHHHHHHhcCCChhH------hhhhchhhHHHHHHHHHHHHHHH
Q psy9576 10 QAKIDFSTAVSISSLENAKSYYLGKNG-KLTQYIKNIKNISINE------RKRYGEIINSIKINIKKELNIHR 75 (338)
Q Consensus 10 ~~~~~i~~~~~~~~l~~~~~~~lGkkg-~l~~l~~~l~~l~~ee------r~~~G~~~n~~k~~~~~~~~~~~ 75 (338)
.+...++..++ .-|..+|..=.|.-| .|+.|.+.+..++|.+ ++-+|+.++.+|..++..+....
T Consensus 23 ~~~~~~a~~s~-~iL~~v~~~d~~~vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~klf~k~~~~~~~~~~ky~ 94 (333)
T PF05816_consen 23 EAQEKIAQFSD-RILDRVRNKDSGEVGELLNELRKEMDELDPSELKDEKKKGFLGKLFGKAKNSLERYFAKYQ 94 (333)
T ss_pred HHHHHHHHHHH-HHHHHHHHhccchHhHHHHHHHHHHHhCChhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHH
Confidence 33344433332 457778877666555 6777888888888765 36688888877777777766543
No 174
>PRK13414 flagellar biosynthesis protein FliZ; Provisional
Probab=25.08 E-value=1.2e+02 Score=26.67 Aligned_cols=63 Identities=24% Similarity=0.194 Sum_probs=43.4
Q ss_pred cCCCHHHHHHHHHHh-----cCCcchHHHHHHHhcCC-ChhHhhhhchhhHHHHHHHHHHHHHHHHHHH
Q psy9576 17 TAVSISSLENAKSYY-----LGKNGKLTQYIKNIKNI-SINERKRYGEIINSIKINIKKELNIHRDILK 79 (338)
Q Consensus 17 ~~~~~~~l~~~~~~~-----lGkkg~l~~l~~~l~~l-~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~ 79 (338)
.+.+.++|++++.++ .|++.....+++.|-.- -+|+-+--|...-++..+||.-+..++..|+
T Consensus 139 Eik~~EELenlk~~l~ki~s~~~~~SFksIF~KiL~knkK~~~~~~~~ey~~lE~~IEtSLK~KQDRLK 207 (209)
T PRK13414 139 EIKSEEELENLKFRLSKIKSSAKKDSFKSIFKKILRKNKKEEIPFDGNEYAKLENDIETSLKSKQDRLK 207 (209)
T ss_pred HhcchhhhhhhHhhHHhhhccccchhHHHHHHHHHHhcccccCCCCccHHHHHHHHHHhhhhhhHhHhh
Confidence 455677888876554 56677777777665433 3355556677777888888888888887775
No 175
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=23.86 E-value=77 Score=33.33 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=50.1
Q ss_pred hcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCC
Q psy9576 16 STAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDI 94 (338)
Q Consensus 16 ~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~id~ 94 (338)
++.+..-++|++-.+|.-.+|.+..++.-+++..-- |.-+-.+.-+.|..+++.+++...-++...+..-..-+.+|+
T Consensus 535 ~~ia~avd~EaFylrf~~gr~ii~dIL~~~gd~~rH-~~Lv~~L~~q~~~~ve~qL~aa~~~vk~~~l~nGi~~~tlDV 612 (715)
T COG1107 535 EKIALAVDYEAFYLRFMDGRGIIADILGTTGDADRH-RELVDHLYEQAKEAVEEQLRAALPHVKSERLPNGIAFNTLDV 612 (715)
T ss_pred HHHHHHHhHHHHHhhhcccchHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHHHHHhhhccceeeccCceEEEEeeh
Confidence 333445577888899999999999999887776432 334455666777777777777665555433333333344553
No 176
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=23.41 E-value=2.7e+02 Score=31.34 Aligned_cols=167 Identities=16% Similarity=0.190 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+.++-.+.++.+..|......+.++-... . .||. +. ++++ +.
T Consensus 7 ~q~~i~~l~~~w~~~gc~~~qp~~~e~gag--------t-------------~~p~-----t~---------~~~l--~~ 49 (1000)
T PRK14908 7 MQDMLLALLRYWSEQGCIIHQGYDLEVGAG--------T-------------FNPA-----TF---------LRVL--GP 49 (1000)
T ss_pred HHHHHHHHHHHHHHCCCEEECCcccccccC--------c-------------CCHH-----HH---------Hhhc--CC
Confidence 477888899999999998887766532210 0 1231 22 2333 23
Q ss_pred CCceEEEeeeEEEeCC-C----CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCc
Q psy9576 189 PPIKVITSGRVYRIDS-D----STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPS 261 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-d----~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps 261 (338)
.|.++-.+-.+.|+.. . +..+-.++|.-.++--..-+ +...--.=++.+ |++ .-++||..+. |-.|+
T Consensus 50 ~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi~kp~p~~---~q~~yl~sl~~~-gi~~~~~dirfved~--we~p~ 123 (1000)
T PRK14908 50 EPWRVAYVEPSRRPDDGRYGQNPNRLQTYTQFQVILKPVPGN---PQELYLESLKAI-GIDLRDHDIRFVHDD--WENPT 123 (1000)
T ss_pred CCCcccccCCCCCCCCCCcCCCchhhhhheeeEEEECCCCcc---HHHHHHHHHHHc-CCCccccceeEeecC--CCCCc
Confidence 4667766777778762 1 33444557887666443333 334333445666 861 1246776543 55665
Q ss_pred eEEEEEeecCCCCCCCeeEeeeeecCHH--Hhh-hCCCCCCCeEEEEEeechhHHHHHHcCCCccccc-cc
Q psy9576 262 AEIDIVFQDGPLKGNWLEISGAGQVNPK--VLC-NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF-YK 328 (338)
Q Consensus 262 ~e~~i~~~~g~~~~gwieig~~G~vhP~--Vl~-~~gi~~~~~~~~afelglerlam~~~~i~diR~~-~~ 328 (338)
..+. +.|| ||=.-||==-+ ..+ -.|++....+ .-..-|||||||-.-|++++-++ |.
T Consensus 124 lga~--------glgw-evw~~gmeitqftyfqq~gg~~~~~~~-~eitygler~~m~~q~~~~~~~~~~~ 184 (1000)
T PRK14908 124 IGAW--------GLGW-EVWLDGMEITQFTYFQQAGGKPLDPIS-GEITYGIERIAMYLQKVNHFKDIAWN 184 (1000)
T ss_pred cccc--------cccc-EEEECCeeeeeeeeehhcCCeeccccc-eeeeccHHHHHHHHhCCCeeeeeecC
Confidence 4442 4566 44444442111 222 2355532222 23345899999999999999854 44
No 177
>PLN02900 alanyl-tRNA synthetase
Probab=21.74 E-value=5.2e+02 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETD 136 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~ 136 (338)
..++.+.-.++|.+.|-..+.++++.+.
T Consensus 13 ~~eiR~~Fl~FF~~~gH~~v~s~slvp~ 40 (936)
T PLN02900 13 GDRIRRTFLSFFESKGHTFLPSSPLVPV 40 (936)
T ss_pred HHHHHHHHHHHHHhCCCEEeCCCCcCCC
Confidence 4678888899999999999988877653
No 178
>PF07564 DUF1542: Domain of Unknown Function (DUF1542); InterPro: IPR011439 This domain is found in several cell surface proteins. Some are involved in antibiotic resistance (e.g. Q9RL69 from SWISSPROT and Q9LCJ9 from SWISSPROT) [] and/or cellular adhesion (e.g. Q931R6 from SWISSPROT) []. In some proteins it is repeated more than fifteen times.
Probab=21.19 E-value=1.5e+02 Score=21.58 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Q psy9576 2 NELKKLLIQAKIDFSTAVSISSLENAKSYYL 32 (338)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~l 32 (338)
.+++.+.+.+...|..+.+-.+++..+...+
T Consensus 22 ~~v~~~~~~a~~~I~~a~t~~~V~~~~~~~~ 52 (70)
T PF07564_consen 22 QKVDQILNQAINAINQATTNADVDKAKNKGI 52 (70)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3678889999999999999999999987763
No 179
>PLN02972 Histidyl-tRNA synthetase
Probab=20.68 E-value=4.8e+02 Score=28.57 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=38.7
Q ss_pred eEEEccCC---CC-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 247 QIRFRPSY---FP-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 247 ~~r~~ps~---fp-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
.+.|.++. +. ||..-+|+. + .+. ..+ .|++-|... +.+..||-. ..|++.|.+|+|||..+.
T Consensus 588 ~I~fDlsLvRGLDYYTGiVFE~~--~-~g~-~~g--sIagGGRYD-~Lv~~FgG~--~vPAVGFSiGIERL~~~L 653 (763)
T PLN02972 588 KIVFDLSLARGLDYYTGVIYEAV--F-KGA-QVG--SIAAGGRYD-NLVGMFSGK--QVPAVGVSLGIERVFAIM 653 (763)
T ss_pred cEEECCcccCCCcccCceEEEEE--E-cCC-ccc--eeeecCCch-hHHHhcCCC--CCCEEEEEecHHHHHHHH
Confidence 47777763 23 454446554 3 121 112 577788887 566677432 378999999999997543
No 180
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=20.33 E-value=82 Score=23.42 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCCCeeEeeeeecCHHHhh
Q psy9576 274 KGNWLEISGAGQVNPKVLC 292 (338)
Q Consensus 274 ~~gwieig~~G~vhP~Vl~ 292 (338)
.+|-+-|+|+|++|=+|+.
T Consensus 42 et~e~~l~g~Gelhlev~~ 60 (75)
T PF14492_consen 42 ETGELILSGMGELHLEVLL 60 (75)
T ss_dssp TTSEEEEEESSHHHHHHHH
T ss_pred hhceEEEEECCHHHHHHHH
Confidence 4566789999999988765
Done!