Query psy9576
Match_columns 338
No_of_seqs 249 out of 1928
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pco_A Phenylalanyl-tRNA synth 100.0 2E-98 7E-103 716.4 19.8 327 1-338 1-327 (327)
2 1b7y_A Phers, protein (phenyla 100.0 2.2E-91 7.4E-96 674.9 26.3 326 8-338 2-347 (350)
3 3l4g_A Phenylalanyl-tRNA synth 100.0 9E-64 3.1E-68 499.6 26.3 238 92-336 210-489 (508)
4 2rhq_A Phenylalanyl-tRNA synth 100.0 3.3E-63 1.1E-67 469.8 26.5 248 83-338 29-287 (294)
5 3cmq_A Phenylalanyl-tRNA synth 100.0 1.2E-59 4.2E-64 463.3 20.7 227 95-338 36-308 (415)
6 2odr_D Phosphoseryl-tRNA synth 100.0 4.8E-50 1.7E-54 404.9 22.0 232 86-333 44-365 (685)
7 2odr_A Phosphoseryl-tRNA synth 100.0 4.3E-50 1.5E-54 404.9 21.6 232 86-333 44-365 (665)
8 2du7_A O-phosphoseryl-tRNA syn 100.0 3.3E-50 1.1E-54 403.1 19.1 234 87-336 37-361 (549)
9 2odr_B Phosphoseryl-tRNA synth 100.0 4E-50 1.4E-54 404.9 19.3 232 86-333 44-365 (648)
10 2odr_C Phosphoseryl-tRNA synth 100.0 8.4E-50 2.9E-54 404.0 21.2 232 86-333 44-365 (701)
11 2du3_A O-phosphoseryl-tRNA syn 100.0 3.3E-49 1.1E-53 396.2 17.9 224 100-337 40-359 (534)
12 3qtc_A Pyrrolysyl-tRNA synthet 100.0 3.7E-37 1.3E-41 290.8 22.8 203 101-329 71-279 (290)
13 3l4g_B Phenylalanyl-tRNA synth 100.0 3.4E-37 1.2E-41 316.3 22.1 207 88-313 373-588 (589)
14 3dsq_A Pyrrolysyl-tRNA synthet 100.0 3E-36 1E-40 284.2 23.0 204 101-329 65-276 (288)
15 2rhq_B Phenylalanyl-tRNA synth 100.0 1.5E-36 5.2E-41 320.4 22.4 205 88-318 473-695 (795)
16 3ig2_A Phenylalanyl-tRNA synth 100.0 1.3E-34 4.3E-39 262.0 16.8 186 107-313 4-212 (213)
17 3ica_A Phenylalanyl-tRNA synth 100.0 8.7E-34 3E-38 256.5 18.5 186 107-313 4-212 (213)
18 1b7y_B Phers, protein (phenyla 100.0 3.2E-33 1.1E-37 294.1 18.6 193 88-314 468-678 (785)
19 3pco_B Phenylalanyl-tRNA synth 100.0 3.7E-29 1.3E-33 263.5 13.7 206 88-315 470-691 (795)
20 1nnh_A Asparaginyl-tRNA synthe 99.9 3.7E-23 1.3E-27 195.4 15.7 200 108-326 17-281 (294)
21 1x54_A Asparaginyl-tRNA synthe 99.7 1.4E-16 4.7E-21 157.8 15.5 115 105-241 134-251 (434)
22 1wyd_A Hypothetical aspartyl-t 99.5 1.2E-12 4E-17 129.5 19.0 114 107-241 135-250 (429)
23 1n9w_A Aspartyl-tRNA synthetas 99.4 8.4E-12 2.9E-16 123.1 15.9 115 106-241 125-242 (422)
24 3a5y_A GENX, putative lysyl-tR 99.3 2.5E-10 8.5E-15 109.7 20.8 115 109-241 39-159 (345)
25 3a74_A Lysyl-tRNA synthetase; 99.2 4E-10 1.4E-14 113.0 19.0 112 110-241 178-292 (493)
26 1e1o_A Lysyl-tRNA synthetase, 99.2 4.6E-10 1.6E-14 112.9 18.1 111 110-240 187-300 (504)
27 1l0w_A Aspartyl-tRNA synthetas 99.2 3.7E-09 1.3E-13 108.0 23.1 112 110-241 148-262 (580)
28 3bju_A Lysyl-tRNA synthetase; 99.2 1.1E-09 3.8E-14 110.6 18.2 113 111-241 181-294 (521)
29 3nem_A Aspartyl-tRNA synthetas 99.1 3.6E-09 1.2E-13 104.7 20.4 109 110-240 141-254 (438)
30 3i7f_A Aspartyl-tRNA synthetas 99.1 2.9E-09 9.9E-14 107.6 18.5 89 109-220 247-342 (548)
31 2xgt_A Asparaginyl-tRNA synthe 99.1 7.7E-09 2.6E-13 102.3 19.5 111 109-240 135-247 (435)
32 3m4p_A Ehasnrs, asparaginyl-tR 99.1 5.8E-09 2E-13 103.7 18.6 111 109-240 159-271 (456)
33 1eov_A ASPRS, aspartyl-tRNA sy 99.0 2.4E-08 8.3E-13 100.0 21.1 109 109-237 181-292 (487)
34 4e51_A Histidine--tRNA ligase; 98.8 5.5E-07 1.9E-11 89.8 21.0 126 109-240 49-183 (467)
35 1z7m_A ATP phosphoribosyltrans 98.7 1.3E-07 4.6E-12 90.7 14.2 133 104-243 34-172 (344)
36 4ex5_A Lysine--tRNA ligase; st 98.6 1.5E-07 5E-12 95.0 11.1 111 111-241 209-322 (529)
37 3rac_A Histidine-tRNA ligase; 98.6 6.8E-07 2.3E-11 86.7 15.4 128 107-243 38-179 (373)
38 1wle_A Seryl-tRNA synthetase; 98.6 6.5E-05 2.2E-09 75.3 30.0 196 109-314 222-444 (501)
39 1c0a_A Aspartyl tRNA synthetas 98.6 4.8E-07 1.6E-11 92.5 13.9 112 110-241 142-256 (585)
40 3od1_A ATP phosphoribosyltrans 98.6 1.1E-06 3.6E-11 86.0 15.4 125 109-243 27-158 (400)
41 2dq3_A Seryl-tRNA synthetase; 98.5 3.1E-05 1.1E-09 76.2 25.5 191 110-315 176-394 (425)
42 1h4v_B Histidyl-tRNA synthetas 98.5 1.3E-06 4.4E-11 85.5 14.5 132 105-243 16-156 (421)
43 3net_A Histidyl-tRNA synthetas 98.5 1E-06 3.5E-11 87.7 13.3 147 88-243 6-177 (465)
44 1qe0_A Histidyl-tRNA synthetas 98.5 6.7E-07 2.3E-11 87.5 11.5 130 107-243 17-156 (420)
45 1ses_A Seryl-tRNA synthetase; 98.5 4.2E-05 1.4E-09 75.2 23.7 191 110-315 170-389 (421)
46 3lc0_A Histidyl-tRNA synthetas 98.4 1.8E-06 6.2E-11 85.8 13.4 127 108-243 45-178 (456)
47 1nj8_A Proline-tRNA synthetase 98.4 1E-05 3.5E-10 80.4 18.7 198 109-317 41-264 (459)
48 1wu7_A Histidyl-tRNA synthetas 98.4 2.8E-06 9.7E-11 83.6 14.2 127 107-243 21-154 (434)
49 1htt_A Histidyl-tRNA synthetas 98.4 1.4E-06 4.9E-11 85.3 11.9 130 107-243 19-156 (423)
50 4ah6_A Aspartate--tRNA ligase, 98.3 2.6E-06 9E-11 87.2 12.1 112 110-242 152-267 (617)
51 4g84_A Histidine--tRNA ligase, 98.3 1E-05 3.4E-10 80.1 15.5 125 109-243 31-162 (464)
52 4g85_A Histidine-tRNA ligase, 98.3 8.9E-06 3E-10 81.9 14.3 125 109-243 84-215 (517)
53 1hc7_A Prolyl-tRNA synthetase; 98.3 5.7E-05 1.9E-09 75.4 19.8 198 109-317 47-269 (477)
54 1nj1_A PROR, proline-tRNA synt 98.3 2.1E-05 7.1E-10 79.1 16.3 196 109-317 74-296 (501)
55 2dq0_A Seryl-tRNA synthetase; 98.2 5.7E-05 2E-09 74.9 17.6 193 110-315 197-415 (455)
56 2j3l_A Prolyl-tRNA synthetase; 98.1 4.3E-05 1.5E-09 77.7 15.4 128 108-243 49-190 (572)
57 3uh0_A Threonyl-tRNA synthetas 98.1 0.00017 5.7E-09 71.7 19.0 129 109-243 67-211 (460)
58 3vbb_A Seryl-tRNA synthetase, 98.1 0.00017 5.9E-09 72.4 18.7 196 111-314 206-437 (522)
59 3err_A Fusion protein of micro 98.0 0.00021 7.1E-09 72.3 18.0 190 110-314 279-497 (536)
60 3a32_A Probable threonyl-tRNA 98.0 5.1E-05 1.7E-09 75.6 12.9 128 107-243 50-195 (471)
61 3lss_A Seryl-tRNA synthetase; 98.0 0.00024 8E-09 70.8 17.3 166 110-286 212-396 (484)
62 1nyr_A Threonyl-tRNA synthetas 98.0 2.7E-05 9.2E-10 80.5 10.9 128 108-243 273-415 (645)
63 1qf6_A THRRS, threonyl-tRNA sy 97.9 0.00012 4E-09 75.8 14.5 126 109-243 274-413 (642)
64 3ial_A Prolyl-tRNA synthetase; 97.9 0.00016 5.6E-09 72.7 14.4 196 109-315 58-279 (518)
65 2i4l_A Proline-tRNA ligase; al 97.9 2.9E-05 1E-09 77.0 8.8 131 105-243 66-210 (458)
66 4hvc_A Bifunctional glutamate/ 97.8 0.00077 2.6E-08 67.9 18.3 131 109-243 64-210 (519)
67 1evl_A Threonyl-tRNA synthetas 97.8 4.9E-05 1.7E-09 74.0 8.6 126 109-243 33-172 (401)
68 3qne_A Seryl-tRNA synthetase, 97.7 0.00025 8.5E-09 70.6 12.3 194 111-314 190-412 (485)
69 1ati_A Glycyl-tRNA synthetase; 97.7 0.0035 1.2E-07 62.9 20.5 82 169-251 182-277 (505)
70 1usy_A ATP phosphoribosyltrans 97.6 0.00041 1.4E-08 64.2 11.5 106 116-243 12-122 (275)
71 2cja_A Seryl-tRNA synthetase; 97.4 0.0016 5.6E-08 65.4 14.1 204 109-323 234-502 (522)
72 3mf2_A BLL0957 protein; aminoa 97.3 0.005 1.7E-07 58.6 15.2 146 170-321 144-318 (346)
73 2zt5_A Glycyl-tRNA synthetase; 97.3 0.012 3.9E-07 61.3 18.3 54 167-220 237-300 (693)
74 3ikl_A DNA polymerase subunit 94.3 0.3 1E-05 48.2 11.3 108 170-283 147-271 (459)
75 4ah6_A Aspartate--tRNA ligase, 93.4 0.073 2.5E-06 54.5 5.3 25 302-326 538-562 (617)
76 4ex5_A Lysine--tRNA ligase; st 90.1 0.18 6.1E-06 50.7 3.6 25 302-326 495-519 (529)
77 1c0a_A Aspartyl tRNA synthetas 86.1 0.43 1.5E-05 48.5 3.6 25 302-326 527-551 (585)
78 1g5h_A Mitochondrial DNA polym 77.4 2.9 9.8E-05 41.0 5.7 73 170-243 137-226 (454)
79 3n6o_A Guanine nucleotide exch 57.9 18 0.00062 31.9 5.9 58 5-66 233-299 (311)
80 12as_A Asparagine synthetase; 50.5 1.6E+02 0.0054 27.4 14.6 120 109-237 8-141 (330)
81 3lc0_A Histidyl-tRNA synthetas 48.3 44 0.0015 32.5 7.7 81 226-317 265-349 (456)
82 3od1_A ATP phosphoribosyltrans 46.1 68 0.0023 30.5 8.6 78 227-318 247-328 (400)
83 3bbz_A P protein, phosphoprote 45.1 29 0.00099 23.2 3.9 26 6-31 19-44 (49)
84 4g84_A Histidine--tRNA ligase, 35.7 1.3E+02 0.0044 28.6 8.9 38 279-317 314-351 (464)
85 4e81_A Chaperone protein DNAK; 33.2 1.1E+02 0.0037 26.5 7.1 33 47-79 168-204 (219)
86 2pyq_A Uncharacterized protein 31.8 29 0.00099 27.3 2.7 24 12-35 44-67 (114)
87 3ls0_A SLL1638 protein, PSBQ; 30.7 53 0.0018 26.6 4.2 58 16-73 44-102 (133)
88 2p32_A Heat shock 70 kDa prote 30.0 67 0.0023 24.9 4.7 34 47-80 42-82 (120)
89 2ztg_A Alanyl-tRNA synthetase; 28.9 4E+02 0.014 27.6 11.5 30 107-136 60-89 (739)
90 3lay_A Zinc resistance-associa 27.6 1.3E+02 0.0045 25.3 6.4 57 3-69 75-131 (175)
91 3rac_A Histidine-tRNA ligase; 27.1 1.5E+02 0.0052 27.7 7.5 60 247-317 300-363 (373)
92 1u00_A HSC66, chaperone protei 25.8 1.2E+02 0.0041 26.3 6.1 22 47-68 165-186 (227)
93 4g85_A Histidine-tRNA ligase, 24.3 1.9E+02 0.0064 28.2 7.8 38 279-317 367-404 (517)
94 1ud0_A HSC70, 70 kDa heat-shoc 23.6 1.3E+02 0.0044 22.7 5.2 22 47-68 28-49 (113)
95 1z7m_A ATP phosphoribosyltrans 22.8 3.2E+02 0.011 25.0 8.8 60 247-317 271-334 (344)
96 3zsu_A TLL2057 protein, cyanoq 20.8 45 0.0016 26.9 2.0 52 22-73 47-99 (130)
97 2lhu_A Mybpc3 protein; cardiac 20.3 38 0.0013 26.9 1.4 17 309-326 95-111 (124)
98 2ke4_A CDC42-interacting prote 20.1 98 0.0033 23.5 3.7 34 45-78 8-42 (98)
No 1
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=2e-98 Score=716.43 Aligned_cols=327 Identities=51% Similarity=0.924 Sum_probs=232.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q psy9576 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKK 80 (338)
Q Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~ 80 (338)
|.+++++++++.++|++|+|+++|+++|++||||||.||.++++|+++|+||||++|+.+|++|+.++++++++++.|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~lgk~g~~~~~~~~~~~~~~~~r~~~g~~~n~~k~~~~~~~~~~~~~l~~ 80 (327)
T 3pco_A 1 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELES 80 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee
Q psy9576 81 KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI 160 (338)
Q Consensus 81 ~~~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i 160 (338)
+++++++++++||+|+|++..+.|+.||++++.++||++|.++||+|+++|+++++++||++||+|++||+|+++|||||
T Consensus 81 ~~~~~~~~~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i 160 (327)
T 3pco_A 81 AALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF 160 (327)
T ss_dssp -----CTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS
T ss_pred HHHHHHHhhCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 161 KNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 161 ~np~~~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
++. ++|||||||+|+++|+++.+|+|+||+|+|||+|.|+||+|+|||++|+++|++++|+||||+|+.|++.+
T Consensus 161 ~e~------~vLRThtsp~~lr~l~~~~~pirifeiGrVyR~d~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 161 DTT------RLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp SSS------CEECSCTHHHHHHHHTTCCSSCCBCCEECCBCSCCBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred CCC------ceecccCCHHHHHHHHhCCCCeeEEeeccEEecCCCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 744 89999999999999998889999999999999998899999999999999999999999999999999999
Q ss_pred ccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCC
Q psy9576 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGI 320 (338)
Q Consensus 241 fg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i 320 (338)
||. +.+++|+|+||||||||++++|+|. +++|+||||||||||+|++++||++++|+|||||||+|||+|++|||
T Consensus 235 fg~-~~~vr~rps~fPftePs~eadI~~~----~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AFglgleRlaml~~~i 309 (327)
T 3pco_A 235 FEE-DLQIRFRPSYFPFTEPSAEVDVMGK----NGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGV 309 (327)
T ss_dssp HCS-CSEEEEEEECCTTEEEEEEEEEECS----SSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEEEHHHHHHHHHTC
T ss_pred hCC-CceEEEecCcCCCCCCcEEEEEEEe----CCCeEEEEEEEEECHHHHHHcCCCCccceEEEEEechHHHHHHHcCC
Confidence 984 5789999999999999999999981 24599999999999999999999998999999999999999999999
Q ss_pred CcccccccCChhhhccCC
Q psy9576 321 DDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 321 ~diR~~~~~d~rfl~qf~ 338 (338)
+|||+||+||+|||+||+
T Consensus 310 ~diR~~~~~d~rfl~qf~ 327 (327)
T 3pco_A 310 TDLRSFFENDLRFLKQFK 327 (327)
T ss_dssp SCGGGGTTCCHHHHHTTC
T ss_pred cHHHHHHhcChhHHhccC
Confidence 999999999999999995
No 2
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=100.00 E-value=2.2e-91 Score=674.93 Aligned_cols=326 Identities=41% Similarity=0.805 Sum_probs=229.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q psy9576 8 LIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSL 87 (338)
Q Consensus 8 ~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~ 87 (338)
.+++.++|++|+|+++|+++|++||||||.||.++++|+++|+||||++|+.+|++|+.++++++++++.|+.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (350)
T 1b7y_A 2 LEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEAL 81 (350)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCCccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC-
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS- 166 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~- 166 (338)
++|+||+|+|+...+.|+.||++++.++||++|.++||+|+.+|.++++++||++||+|++||||+++|||||+||. +
T Consensus 82 ~~~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~-s~ 160 (350)
T 1b7y_A 82 ERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEG-FR 160 (350)
T ss_dssp ----CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSS-CC
T ss_pred hhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCcc-cc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999995 4
Q ss_pred ---------CCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHH
Q psy9576 167 ---------NNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236 (338)
Q Consensus 167 ---------~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~l 236 (338)
++..+|||||+|+++++|.++.+|+|+||+|+|||+|. |++|+|+|||++|+++|++++|+||||+|+.|
T Consensus 161 ~~~~~~~~~~~~~vLRt~tsp~llr~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~l 240 (350)
T 1b7y_A 161 LEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYEL 240 (350)
T ss_dssp CBCTTSCBCCSCEEECSSSTHHHHHHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHH
T ss_pred ccccccccccccceeeccchHHHHHHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHH
Confidence 48899999999999999998888999999999999995 89999999999999999999999999999999
Q ss_pred HHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhC-------CCCC--CCeEEEEEe
Q psy9576 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNM-------NLDP--EKYIGFAFG 307 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~-------gi~~--~~~~~~afe 307 (338)
++.+||. +.+++|+|+||||||||++++|+|. + ++||+|||+||||||+|++++ ||++ ++|+|||||
T Consensus 241 l~~lfG~-~~~~r~rps~fPft~Ps~e~~i~~~-~--~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid~~~~~~~~~afg 316 (350)
T 1b7y_A 241 AQALFGP-DSKVRFQPVYFPFVEPGAQFAVWWP-E--GGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFG 316 (350)
T ss_dssp HHHHSCS-SCCEEEEECCBTTEEEEEEEEEEET-T--TTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTCEEEEEE
T ss_pred HHhhcCC-CceEEEecCCCCCCCCccEEEEEEE-e--CCCeEEEEEEEEEeHHHHHhhccccccCCCCCccccceEEEEE
Confidence 9999995 4579999999999999999999872 1 346999999999999999999 9998 889999999
Q ss_pred echhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 308 SGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 308 lglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
||||||+|++|||+|||+||+||+|||+||+
T Consensus 317 lglerl~ml~~gi~DiR~~~~~d~rfl~qf~ 347 (350)
T 1b7y_A 317 LGVERLAMLRYGIPDIRYFFGGRLKFLEQFK 347 (350)
T ss_dssp EEHHHHHHHHTTCCCGGGTTSCCHHHHGGGT
T ss_pred EeHHHHHHHHcCCChHHHHhcCCHHHHHhhh
Confidence 9999999999999999999999999999995
No 3
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=9e-64 Score=499.61 Aligned_cols=238 Identities=36% Similarity=0.624 Sum_probs=217.7
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEe-eCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC----
Q psy9576 92 IDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDIT-DGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS---- 166 (338)
Q Consensus 92 id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev-~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~---- 166 (338)
+++..|+...+.|+.||++++.++||++|.+|||+|+ ++|.++++++||++||+|++||||+++|||||++|...
T Consensus 210 y~~~~~g~~~~~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~ 289 (508)
T 3l4g_A 210 YNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLP 289 (508)
T ss_dssp CCSSSCCCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCC
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCcccccccc
Confidence 4566888889999999999999999999999999998 57999999999999999999999999999999998421
Q ss_pred C-----------------------------CcceEeccchHHHHHHHhc-----CCCCceEEEeeeEEEeC-CCCCCCcc
Q psy9576 167 N-----------------------------NKPLLRTHTSPMQIRYSKI-----NKPPIKVITSGRVYRID-SDSTHSPM 211 (338)
Q Consensus 167 ~-----------------------------~~~~LRt~lsp~~l~~l~~-----~~~pirifeiG~Vyr~d-~d~th~~~ 211 (338)
+ ++++|||||+|+++++|++ +.+|+|+||+|+|||+| .|+||+|+
T Consensus 290 e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpe 369 (508)
T 3l4g_A 290 MDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAE 369 (508)
T ss_dssp HHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSE
T ss_pred HHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCe
Confidence 1 5789999999999999964 35899999999999999 48999999
Q ss_pred eeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh
Q psy9576 212 FHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291 (338)
Q Consensus 212 f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl 291 (338)
|||++++++|++++|+||||+|+.|++.+ |. .+++|+|+||||||||+++++++ +| .++|+|||+||||||+||
T Consensus 370 FhQlegl~~~~~v~f~dLKg~Le~~l~~l-G~--~~~rfrps~fPftePS~ev~i~~-~G--~~~W~EIGg~G~vhP~VL 443 (508)
T 3l4g_A 370 FHQIEGVVADHGLTLGHLMGVLREFFTKL-GI--TQLRFKPAYNPYTEPSMEVFSYH-QG--LKKWVEVGNSGVFRPEML 443 (508)
T ss_dssp EEEEEEEEEEESCCHHHHHHHHHHHHHTT-TC--CCCEEEECCCTTCSSEEEEEECC-ST--TSSCEEEEEEECCCHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHc-CC--cceEeeccCCCCCCCeEEEEEEE-CC--ccceEEEEeeeeEcHHHH
Confidence 99999999999999999999999999998 84 56899999999999999998876 22 236999999999999999
Q ss_pred hhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC--Chhhhcc
Q psy9576 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG--NINFLKQ 336 (338)
Q Consensus 292 ~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~--d~rfl~q 336 (338)
+++|| |++|+|||||||||||+|++|||+|||+||++ |+.|++.
T Consensus 444 ~~~Gi-pe~~~v~AfgLgLeRLaml~~gi~diR~l~~~~~dl~~~~~ 489 (508)
T 3l4g_A 444 LPMGL-PENVSVIAWGLSLERPTMIKYGINNIRELVGHKVNLQMVYD 489 (508)
T ss_dssp GGGTC-CTTEEEEEEEEESHHHHTTTTTCSCGGGTSSTTCCHHHHHH
T ss_pred HHCCC-CCCceEEEEEecHHHHHHHHcCCcHHHHHhcCCcCHHHHhh
Confidence 99999 56699999999999999999999999999998 8999875
No 4
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=100.00 E-value=3.3e-63 Score=469.85 Aligned_cols=248 Identities=51% Similarity=0.908 Sum_probs=228.5
Q ss_pred HHHhhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecC
Q psy9576 83 LKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKN 162 (338)
Q Consensus 83 ~~~~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~n 162 (338)
+......++||+|+|....+.|..||.+++.+.||++|+++||+|+++|.++++.+||+++++|.+||+|+++|+++|++
T Consensus 29 v~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e 108 (294)
T 2rhq_A 29 LNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITD 108 (294)
T ss_dssp HHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSS
T ss_pred HHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcC
Confidence 34445678999999988889999999999999999999999999999999988899999999999999999999999963
Q ss_pred CccCCCcceEeccchHHHHHHHhcC--CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHH
Q psy9576 163 RYVSNNKPLLRTHTSPMQIRYSKIN--KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRV 239 (338)
Q Consensus 163 p~~~~~~~~LRt~lsp~~l~~l~~~--~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~ 239 (338)
.++|||||+|+++++|+++ .+|+|+||+|+|||+|. |.+|.|+|+|++++++|++++|+|+||+|+.+++.
T Consensus 109 ------~~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~ 182 (294)
T 2rhq_A 109 ------EILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKK 182 (294)
T ss_dssp ------SEEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred ------cceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999876 78999999999999985 78999999999999999999999999999999999
Q ss_pred hccCCCeeEEEccCCCCCCCCceEEEEEee--cC------CCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 240 FFESDNIQIRFRPSYFPFTEPSAEIDIVFQ--DG------PLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 240 lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~--~g------~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
+||. ..+++|+|+++||+|||++++|+|. +| + +.+|++||+||+|||+|++++||++++|+|||||||||
T Consensus 183 l~g~-~~~~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~-~~~w~eiG~~G~vhP~Vl~~~gl~~~~~~~~afel~le 260 (294)
T 2rhq_A 183 LFGA-DREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCK-HTGWIEILGAGMVHPNVLEMAGFDSNEYSGFAFGMGPD 260 (294)
T ss_dssp HHCT-TCCEEEEECCBTTEEEEEEEEEECSSSTTSCCTTTT-TSSEEEEEEEEEECHHHHHTTTCCTTTCEEEEEEECHH
T ss_pred HhCC-CcEEEEecCcCCCCCCcEEEEEEEEccCCccccccc-CCCCeEEEEEeeECHHHHHHcCCCCCcCeEEEEEEeHH
Confidence 8885 4568999999999999999999872 22 3 45899999999999999999999988899999999999
Q ss_pred HHHHHHcCCCcccccccCChhhhccCC
Q psy9576 312 RLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 312 rlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
||+|++|||+|||+||+||+|||+||+
T Consensus 261 ~L~m~~~~i~diR~~~~~d~rfl~qf~ 287 (294)
T 2rhq_A 261 RIAMLKYGIEDIRYFYTNDVRFLEQFK 287 (294)
T ss_dssp HHHHHHHTCCCTTHHHHCCHHHHTTCC
T ss_pred HHHHHHcCCCHHHHHhcCCHHHHHHhC
Confidence 999999999999999999999999995
No 5
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=100.00 E-value=1.2e-59 Score=463.34 Aligned_cols=227 Identities=36% Similarity=0.647 Sum_probs=209.6
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhhC--------CCeEeeC-CccccchhhhhhcCCCCCCCCCcCccceeecCCcc
Q psy9576 95 TLPGRGKNKGGLHPIMRTLERIEKIFYSI--------GFDITDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV 165 (338)
Q Consensus 95 tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~--------GF~Ev~~-~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~ 165 (338)
|+|+...+.|+.||++++.++||++|.++ ||+|+++ +.++++++|||+||+|++||||+++|||||+..
T Consensus 36 ~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~-- 113 (415)
T 3cmq_A 36 TRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRT-- 113 (415)
T ss_dssp TTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSS--
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCC--
Confidence 48988899999999999999999999999 9999998 999999999999999999999999999999765
Q ss_pred CCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEE------------cCCC--------
Q psy9576 166 SNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWI------------DKNI-------- 224 (338)
Q Consensus 166 ~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~------------g~~~-------- 224 (338)
.+|||||||+|+++|+.+. | |+|++|+|||+|. |++|.|+|||++++.+ ++.+
T Consensus 114 ----~vLRThts~~~~~~l~~~~-~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~~~~~~~~la~~~~g~~ 187 (415)
T 3cmq_A 114 ----HMLRAHTSAHQWDLLHAGL-D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSR 187 (415)
T ss_dssp ----EEECSSGGGGHHHHHHTTC-S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCC
T ss_pred ----eEEcCCCcHHHHHHHHHCC-C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceeccccccceEEEEEecCc
Confidence 8999999999999998764 4 9999999999994 8999999999999998 3222
Q ss_pred ---------------CHHHHHHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHH
Q psy9576 225 ---------------SFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPK 289 (338)
Q Consensus 225 ---------------~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~ 289 (338)
+|+|+||+|+.+++.+||. ..+++|+|+++||+|||.+++|+| +++|+|++|||+|||+
T Consensus 188 ~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~-~~~~~~~~~~~p~~hPgr~a~I~~-----~g~wlE~lG~G~lhP~ 261 (415)
T 3cmq_A 188 SAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGD-ELEIRWVDCYFPFTHPSFEMEINF-----HGEWLEVLGCGVMEQQ 261 (415)
T ss_dssp CSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCT-TCCEEEEEEEETTEEEEEEEEEEE-----TTEEEEEEEEEEECHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHcCC-CceEEEecCCCCCCCCceEEEEEE-----CCeeEEEEEEEEeCHH
Confidence 2799999999999998896 446899999999999999999999 5679999999999999
Q ss_pred HhhhCCCCCCCeEE-EEEeechhHHHHHHcCCCcccccccCChhhhccCC
Q psy9576 290 VLCNMNLDPEKYIG-FAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 290 Vl~~~gi~~~~~~~-~afelglerlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
|++++||+ .++ ||||||||||+|++|||+|||+||+||+|||+||+
T Consensus 262 Vl~~~gl~---~~vg~afel~le~l~~~~~~i~DiR~~~~~d~rfl~qf~ 308 (415)
T 3cmq_A 262 LVNSAGAQ---DRIGWAFGLGLERLAMILYDIPDIRLFWCEDERFLKQFC 308 (415)
T ss_dssp HHHHTTCT---TEEEEEEEEEHHHHHHHHSCCCCGGGGGCCCHHHHGGGC
T ss_pred HHHHcCCC---CcceEEEEEcHHHHhhhhcCcchhhhhhcccHHHHHhcc
Confidence 99999997 345 99999999999999999999999999999999994
No 6
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=4.8e-50 Score=404.91 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=205.4
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~-----pq~gHPAR~~~D~tFyL~~P 118 (685)
T 2odr_D 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (685)
T ss_dssp GSCCCCGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEBC
T ss_pred hccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhC-----CCcCCCccccCCcEEEECCC
Confidence 4778899999999888999999999999999999999999999999999999984 667 99999999 9999986
Q ss_pred cc---------------------------------------------------------------------------CCC
Q psy9576 164 YV---------------------------------------------------------------------------SNN 168 (338)
Q Consensus 164 ~~---------------------------------------------------------------------------~~~ 168 (338)
.. ..+
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~ 198 (685)
T 2odr_D 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (685)
T ss_dssp CC---------------------------------------------------------------------CCCCCCBCC
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccc
Confidence 30 014
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++++++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L-G 277 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 789999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yHPGre--AEI~V~~--~g-~~GW~EIG~~GeVHPeVLk~~GId---~~V~AFELgLErLaml 347 (685)
T 2odr_D 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (685)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCCCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 k~gi~DIR~~~~~dISRF 365 (685)
T 2odr_D 348 SGNFADVREMVYPQFYEH 365 (685)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
No 7
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=4.3e-50 Score=404.88 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=205.5
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~-----pq~gHpAR~~~D~tFyL~~P 118 (665)
T 2odr_A 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (665)
T ss_dssp GSCCCCTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEBC
T ss_pred hccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhC-----CCcCCCccccCCcEEEECCC
Confidence 4788899999999888999999999999999999999999999999999999984 667 99999999 9999986
Q ss_pred cc---------------------------------------------------------------------------CCC
Q psy9576 164 YV---------------------------------------------------------------------------SNN 168 (338)
Q Consensus 164 ~~---------------------------------------------------------------------------~~~ 168 (338)
.. ..+
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~ 198 (665)
T 2odr_A 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (665)
T ss_dssp CC---------------------------------------------------------------------CCCCCCBCC
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccc
Confidence 30 014
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++++++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L-G 277 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 789999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yhPGre--AEI~V~~--~g-~~GW~EIG~~GeVHPeVLk~~GId---~~V~AFELgLErLaml 347 (665)
T 2odr_A 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (665)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCCCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 ~~gi~DIR~~~~~diSRF 365 (665)
T 2odr_A 348 SGNFADVREMVYPQFYEH 365 (665)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
No 8
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.3e-50 Score=403.14 Aligned_cols=234 Identities=25% Similarity=0.436 Sum_probs=205.1
Q ss_pred hccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCCc
Q psy9576 87 LKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNRY 164 (338)
Q Consensus 87 ~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np~ 164 (338)
+...++|.++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|.
T Consensus 37 ~~~~~~d~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~-----pq~ghpAr~~~D~tfyl~~p~ 111 (549)
T 2du7_A 37 IKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIY-----KQFGPEAMAVLDRCFYLAGLP 111 (549)
T ss_dssp SCCCTTTTSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHH-----HHTCTTHHHHGGGCCEEECCC
T ss_pred hhccCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhC-----CCcCCCcccccCceEEECCCC
Confidence 677889999999888999999999999999999999999999999999999984 667 99999999 99999862
Q ss_pred c-------------------------------------------------------------------C---------CC
Q psy9576 165 V-------------------------------------------------------------------S---------NN 168 (338)
Q Consensus 165 ~-------------------------------------------------------------------~---------~~ 168 (338)
. + ++
T Consensus 112 ~~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e 191 (549)
T 2du7_A 112 RPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPEST 191 (549)
T ss_dssp CCCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEE
T ss_pred CcccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhcccccccc
Confidence 1 0 14
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC--CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~--d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+|. +++|.++|||++|+++|++++|+||||+|+.+++.+ |
T Consensus 192 ~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L-G 270 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF-G 270 (549)
T ss_dssp EEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG-T
T ss_pred ccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 689999999988888754 367999999999999985 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. ..++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 271 i--~~~rfrps~~~~p~yhPGr~--AeI~v~~--~g-~~gw~eIG~~GeVHP~VLk~~gId---~~v~aFELgLErL~m~ 340 (549)
T 2du7_A 271 F--TKFKFKPDEKKSKYYTPETQ--TEVYAYH--PK-LGEWIEVATFGVYSPIALAKYNID---VPVMNLGLGVERLAMI 340 (549)
T ss_dssp C--CCCCCEECTTCCTTBCTTTC--EEEEECC--SS-SSCSEEEEEEEEBCHHHHHHTTCC---SCEEEEEEBHHHHHHH
T ss_pred C--CeEEEEECCCCCcccCCceE--EEEEEec--CC-CCCcEEEEEEEEECHHHHHHcCCC---CCeEEEEEeHHHHHHH
Confidence 4 35788887 666665 5555533 11 137999999999999999999998 6799999999999999
Q ss_pred HcCCCcccccccCCh-hhhcc
Q psy9576 317 RYGIDDLRLFYKGNI-NFLKQ 336 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rfl~q 336 (338)
+|+++|||.++.+|+ ||...
T Consensus 341 ~~~i~dIR~~~~~dlsrFPav 361 (549)
T 2du7_A 341 IYGYEDVRAMVYPQFYEYRLS 361 (549)
T ss_dssp HTTCSCSHHHHSSSSSCCCCC
T ss_pred hcCCCcccccccCCcccCCcc
Confidence 999999999999999 88753
No 9
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=4e-50 Score=404.88 Aligned_cols=232 Identities=22% Similarity=0.359 Sum_probs=200.7
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~-----pq~gHpAR~~~D~tFyl~~P 118 (648)
T 2odr_B 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (648)
T ss_dssp ------CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEBC
T ss_pred hccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhC-----CCcCCCccccCCceEEECCC
Confidence 3566789999999888999999999999999999999999999999999999984 667 99999999 9999986
Q ss_pred cc---------------------------------------------------------------------------CCC
Q psy9576 164 YV---------------------------------------------------------------------------SNN 168 (338)
Q Consensus 164 ~~---------------------------------------------------------------------------~~~ 168 (338)
.. ..+
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~ 198 (648)
T 2odr_B 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (648)
T ss_dssp CC---------------------------------------------------------------------CCCCCCBCC
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccc
Confidence 30 014
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++|+++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L-G 277 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 789999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yhPGre--AEI~v~~--~g-~~GW~EIG~~GeVHP~VLk~~GId---~~V~AFELgLErLaml 347 (648)
T 2odr_B 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (648)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCcCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 ~~gi~DIR~~~~~diSRF 365 (648)
T 2odr_B 348 SGNFADVREMVYPQFYEH 365 (648)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
No 10
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=100.00 E-value=8.4e-50 Score=404.00 Aligned_cols=232 Identities=22% Similarity=0.354 Sum_probs=204.9
Q ss_pred hhccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeecCC
Q psy9576 86 SLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIKNR 163 (338)
Q Consensus 86 ~~~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~np 163 (338)
.+++.++|+++|....+.|+.||++++.++||++|.+|||+|+++|.++++++|| |.+ ||||+++| ||||++|
T Consensus 44 ~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~-----pq~gHPAR~~~D~tFYL~~P 118 (701)
T 2odr_C 44 LIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIY-----KQFGPEAMAVLDRCFYLAGL 118 (701)
T ss_dssp GSCCCCTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHH-----HHHGGGHHHHHHTCEEEEEC
T ss_pred hccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhC-----CCcCCCccccCCcEEEECCC
Confidence 4788899999999888999999999999999999999999999999999999984 667 99999999 9999976
Q ss_pred cc------------------------------------------------------------------CC---------C
Q psy9576 164 YV------------------------------------------------------------------SN---------N 168 (338)
Q Consensus 164 ~~------------------------------------------------------------------~~---------~ 168 (338)
.. ++ +
T Consensus 119 ~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~ 198 (701)
T 2odr_C 119 PRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSS 198 (701)
T ss_dssp CC---------------------------------------------------------------------CCCCCCEEE
T ss_pred CCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccc
Confidence 30 01 3
Q ss_pred cceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 169 KPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 169 ~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
+++|||||+|+++.+++. +.+|+|+||+|+|||+| . |++|.++|||++++++|++++|+||||+|+.|++.+ |
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L-G 277 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF-G 277 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT-T
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc-C
Confidence 689999999988777643 46899999999999998 4 789999999999999999999999999999999998 8
Q ss_pred CCCeeEEEccC------CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 243 SDNIQIRFRPS------YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 243 ~~~~~~r~~ps------~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
. .+++|+|+ ||||++ +++++.+ ++ .+||.+||+||||||+|++++||+ .++||||||||||+|+
T Consensus 278 i--~~vrfrpse~~~p~yHPGre--AEI~V~~--~g-~~GW~EIG~~GeVHPeVLk~~GId---~~V~AFELgLErLaml 347 (701)
T 2odr_C 278 F--TNFKFIPDEKKSKYYTPETQ--TEVYAYH--PK-LKEWLEVATFGVYSPVALSKYGID---VPVMNLGLGVERLAMI 347 (701)
T ss_dssp C--CCEEEEECTTCCTTBCTTCC--EEEEEEE--TT-TTEEEEEEEEEEBCHHHHHHTTCC---SCEEEEEEEHHHHHHH
T ss_pred C--CeEEEEECCCCCCCcCCceE--EEEEEec--CC-CCCCEEEEEEeEECHHHHHHcCCC---CCEEEEEEeHHHHHHH
Confidence 4 46889887 677776 6666654 11 237999999999999999999998 6789999999999999
Q ss_pred HcCCCcccccccCCh-hh
Q psy9576 317 RYGIDDLRLFYKGNI-NF 333 (338)
Q Consensus 317 ~~~i~diR~~~~~d~-rf 333 (338)
+|+++|||.||.+|+ ||
T Consensus 348 k~gi~DIR~~~~~dISRF 365 (701)
T 2odr_C 348 SGNFADVREMVYPQFYEH 365 (701)
T ss_dssp HTTCSCHHHHHCGGGSCC
T ss_pred hcCCCcccccccCCcCCC
Confidence 999999999999999 88
No 11
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00 E-value=3.3e-49 Score=396.20 Aligned_cols=224 Identities=27% Similarity=0.435 Sum_probs=196.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCC-CCCCcCcc-ceeec----------------
Q psy9576 100 GKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKN-HPARSMHD-TFYIK---------------- 161 (338)
Q Consensus 100 ~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~-hpar~~~d-t~~i~---------------- 161 (338)
..+.|+.||.+++.++||++|.++||+|+.+|+++++++| +|.+ ||||+++| +||+.
T Consensus 40 ~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n-----~p~~~Hpar~~~Dr~fyl~~~~~~~~g~~~~~~e~ 114 (534)
T 2du3_A 40 GFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHV-----KKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQ 114 (534)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHH-----HHHHGGGHHHHHTTSCEEEECCCCCTTGGGTTTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhc-----ccccccchhhhccceeeccCcccccccccchhhhh
Confidence 4588999999999999999999999999999999999876 4444 89999988 88763
Q ss_pred --------------------------------------------------CCccCCC---------cceEeccchHHHHH
Q psy9576 162 --------------------------------------------------NRYVSNN---------KPLLRTHTSPMQIR 182 (338)
Q Consensus 162 --------------------------------------------------np~~~~~---------~~~LRt~lsp~~l~ 182 (338)
||. +++ +++|||||+|+++.
T Consensus 115 I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPi-s~e~~~~~~~~~~svLRTsLlPgLL~ 193 (534)
T 2du3_A 115 IEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEV-FPEFKELKPISSTLTLRSHMTTGWFI 193 (534)
T ss_dssp TSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTT-CTTTTTCCCEEEEEEECSSHHHHHHH
T ss_pred hhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCC-ChhhccccccccccccCccchhhHHH
Confidence 343 566 68999999999999
Q ss_pred HHhc----CCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccC---
Q psy9576 183 YSKI----NKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPS--- 253 (338)
Q Consensus 183 ~l~~----~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps--- 253 (338)
+++. +.+|+|+||+|+|||+| . +++|.++|||++++++|.+++|+|+||+++.+++.+ |. ..++|+|+
T Consensus 194 ~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L-Gi--~~~r~~~~~~~ 270 (534)
T 2du3_A 194 TLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF-GF--ENFRFRKDEKR 270 (534)
T ss_dssp HHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG-TC--CEEEEEECTTC
T ss_pred HHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc-CC--CeEEEEECCCC
Confidence 8864 35799999999999998 4 778999999999999999999999999999999998 85 46888887
Q ss_pred ---CCCCCCCceEEEEEeec--C---CCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccc
Q psy9576 254 ---YFPFTEPSAEIDIVFQD--G---PLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRL 325 (338)
Q Consensus 254 ---~fpf~~Ps~e~~i~~~~--g---~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~ 325 (338)
||||++ ++++++|.+ | +...||+|||+||+|||+||+++|++ ++|||||||||||+|++|||+|||+
T Consensus 271 ~~~yhPgt~--aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~---~~v~afeLgLErLaMl~~gi~DIR~ 345 (534)
T 2du3_A 271 SKYYIPDTQ--TEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYGYDDVRK 345 (534)
T ss_dssp CTTBCTTTC--EEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCC---SCEEEEEEEHHHHHHHHTTCSCHHH
T ss_pred cccccCCeE--EEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCC---CcEEEEEecHHHHHHhhcCCchhhh
Confidence 788887 778776531 1 10247999999999999999999997 8999999999999999999999999
Q ss_pred cccCCh--hhhccC
Q psy9576 326 FYKGNI--NFLKQF 337 (338)
Q Consensus 326 ~~~~d~--rfl~qf 337 (338)
||++|+ ||++||
T Consensus 346 ~~~~d~~~rfl~qf 359 (534)
T 2du3_A 346 MVYPQIHGEIKLSD 359 (534)
T ss_dssp HHCTTTTTCCCCCH
T ss_pred hhcccccHhHHhhh
Confidence 999999 999998
No 12
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=100.00 E-value=3.7e-37 Score=290.78 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=172.6
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH
Q psy9576 101 KNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180 (338)
Q Consensus 101 ~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~ 180 (338)
.+.|..||.+++.+.||++|.++||+|+.+|.+++. .++++++.+.++|.+. ++++++.. .+|||+++|++
T Consensus 71 ~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~-~~~~~~~~~~~~p~~~--~~~~~~~~------~~LR~slsp~L 141 (290)
T 3qtc_A 71 YAEERENYLGKLEREITRFFVDRGFLEIKSPILIPL-EYIERMGIDNDTELSK--QIFRVDKN------FCLRPMLTPNL 141 (290)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTCEEECCCSEEET-HHHHHTTCCTTSSGGG--GCCEETTT------EEECSCSHHHH
T ss_pred hccccccHHHHHHHHHHHHHHHCCCEEEECCceeeH-HHHHhcCCCcCCchhh--hheeeCCC------eeEcccChHHH
Confidence 345788999999999999999999999999999887 4799999988887653 45666433 89999999999
Q ss_pred HHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCCCeeEEEccCCC
Q psy9576 181 IRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYF 255 (338)
Q Consensus 181 l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps~f 255 (338)
++++.. ...|+|+||+|+|||++ .+.+|.+||+|+++.++|.+.+|+++|++++.+++.+ |. .+++. ..
T Consensus 142 ~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l-Gl---~~~~~--~~ 215 (290)
T 3qtc_A 142 YNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL-GI---DFKIV--GD 215 (290)
T ss_dssp HHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH-TC---CCEEE--C-
T ss_pred HHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc-CC---CcEEe--CC
Confidence 998864 36789999999999998 4678999999999999999999999999999999998 85 34444 45
Q ss_pred CCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh-hhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 256 PFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL-CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 256 pf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl-~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
|+.|||..++|.+ +|.+||. |+|||+|+ +++||+ .++||||||+|+|+|++|||+|||+|+..
T Consensus 216 ~~~hpgr~a~i~~-------~~~~iG~-G~lhP~vl~~~~~i~---~~v~~~el~le~l~~~~~~~~dir~~~~~ 279 (290)
T 3qtc_A 216 SCMVFGDTLDVMH-------GDLELSS-ALVGPIPLDREWGID---KPWIGAGFGLERLLKVKHDFKNIKRAARS 279 (290)
T ss_dssp -----CEEEEEEE-------TTEEEEE-EEESCCGGGGGGTCC---SCEEEEEEEHHHHHHHHHTCSSGGGGSSC
T ss_pred CccccCCcccEee-------CCEEEEE-EEecHHHHHHhCCCC---CceEEEEECHHHHHHHHcCCcHHHHHhcc
Confidence 7789999999865 5889987 99999999 899998 67999999999999999999999999853
No 13
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=316.28 Aligned_cols=207 Identities=16% Similarity=0.202 Sum_probs=185.8
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++||.|+|.. .+.|+.||.+++.+.+|++|+++||+|+.++++++..++|++||+|.+| +++++|.||+ ++
T Consensus 373 GYdnIp~tlP~~-~~~g~~~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~-----~~~v~L~NPi-s~ 445 (589)
T 3l4g_B 373 GYNNIQMTLPKT-YTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISA-----TKAVHISNPK-TA 445 (589)
T ss_dssp CGGGSCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTS-----SCCCBBSSCS-SG
T ss_pred CcccCCCcCCCc-cccCCCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCC-----CCeEEEcCCC-ch
Confidence 346899999985 6789999999999999999999999999999999998899999998776 3679999996 89
Q ss_pred CcceEeccchHHHHHHHhcC---CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC
Q psy9576 168 NKPLLRTHTSPMQIRYSKIN---KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~~---~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~ 243 (338)
++++|||||+|++++++++| .+|+|+||+|+||+++. +.+|.++++|++++++|+.++|+++||+++.+++.+ |.
T Consensus 446 e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l-g~ 524 (589)
T 3l4g_B 446 EFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL-DV 524 (589)
T ss_dssp GGSEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT-TC
T ss_pred hHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence 99999999999999999753 35999999999999984 567889999999999999999999999999999998 86
Q ss_pred CCe-----eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 244 DNI-----QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 244 ~~~-----~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .++++++.+|+.|||.+++|++ +|+ .||++|+|||+|++++|++ .++|+|||++|.|
T Consensus 525 -~~~~~~~~~~~~~~~~~~~hPGr~A~I~~-~g~------~iG~~GelHP~v~~~~~l~---~~v~~~El~l~~l 588 (589)
T 3l4g_B 525 -PPGEDKGGYVIKASEGPAFFPGRCAEIFA-RGQ------SVGKLGVLHPDVITKFELT---MPCSSLEINIGPF 588 (589)
T ss_dssp -CBSTTTTSEEEEECCCTTEEEEEEEEEEE-TTE------EEEEEEEECHHHHHHTTCC---SCEEEEEEECGGG
T ss_pred -CccccccceEEeccCCCCccCCCEEEEEE-CCe------EEEEEEEECHHHHHHcCCC---CCeEEEEEEhHHh
Confidence 32 4788999999999999999987 222 8999999999999999998 7899999999975
No 14
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=100.00 E-value=3e-36 Score=284.24 Aligned_cols=204 Identities=17% Similarity=0.224 Sum_probs=165.1
Q ss_pred CCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH
Q psy9576 101 KNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180 (338)
Q Consensus 101 ~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~ 180 (338)
.+.|+.||++++.+.||++|.++||+|+.+|.+++.. .++..+.+++|+ + +.+.+|. +++ .+|||+++|++
T Consensus 65 ~~~g~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~-l~~~~g~~~~~~---m---~~~~npl-~e~-~~LRp~l~p~l 135 (288)
T 3dsq_A 65 RTVKHRPALLELEEKLAKALHQQGFVQVVTPTIITKS-ALAKMTIGEDHP---L---FSQVFWL-DGK-KCLRPMLAPNL 135 (288)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHH-HHHTTSSCC--C---C---TTTSCEE-ETT-EEECSCSHHHH
T ss_pred hcCCCcCHHHHHHHHHHHHHHHCCCEEEECCeeecHH-HHhhcCCCcccc---c---EEeeccc-ccc-hhhhhcChHHH
Confidence 5568899999999999999999999999999998865 455555544432 2 2233443 333 59999999999
Q ss_pred HHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcC--CCCHHHHHHHHHHHHHHhccCCCeeEEEccC
Q psy9576 181 IRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDK--NISFSDLKGVYLNFIRVFFESDNIQIRFRPS 253 (338)
Q Consensus 181 l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~--~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ps 253 (338)
+++++. ..+|+|+|++|+|||++ .+.+|.++|||++++++|+ .++|+++|++++.+++.+ |. ..+++.+.
T Consensus 136 ~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L-Gl--~~~~~~~~ 212 (288)
T 3dsq_A 136 YTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA-GI--REFELVTE 212 (288)
T ss_dssp HHHHHHHTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH-TC--CCCEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc-CC--CCcEEecC
Confidence 976532 46799999999999999 5789999999999999997 789999999999999999 95 24555443
Q ss_pred CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHh-hhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 254 YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL-CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 254 ~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl-~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
.. .+++..+++.+ +|.|||+|| |||+|+ +++||+ .++++||||+|||+|++||++|||+++.+
T Consensus 213 s~--e~~~~~~~l~~-------~~~eig~~G-v~p~vl~~~~gi~---~~~~gfglglerl~m~~~g~~~iR~~~~~ 276 (288)
T 3dsq_A 213 SS--VVYGDTVDVMK-------GDLELASGA-MGPHFLDEKWEIF---DPWVGLGFGLERLLMIREGTQHVQSMARS 276 (288)
T ss_dssp CC--CSSCCCEEEEE-------TTEEEEEEE-EESCTTTTTTTCC---SCEEEEEEEHHHHHHHHHTCSCGGGGSSC
T ss_pred Cc--ceEEEEEEEEe-------CCEEEEEEE-ecHHHHHHhcCCC---CCeEEEEECHHHHHHHHcCCchhhcCCCC
Confidence 22 23455566643 589999999 999999 999998 46889999999999999999999999975
No 15
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=1.5e-36 Score=320.37 Aligned_cols=205 Identities=14% Similarity=0.210 Sum_probs=180.4
Q ss_pred ccccCCCCCCC-CCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcc-ceeecCCcc
Q psy9576 88 KTNKIDITLPG-RGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHD-TFYIKNRYV 165 (338)
Q Consensus 88 ~~~~id~tlp~-~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~d-t~~i~np~~ 165 (338)
--++||.|+|. ...+.|..||.+++.+++|++|+++||+|+.++++++...+ +.|+ |+ ++ +++|.||.
T Consensus 473 GydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~-~~-------~~~~v~L~NPi- 542 (795)
T 2rhq_B 473 GYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA-LQ-------ERPTISLLMPM- 542 (795)
T ss_dssp CTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC-SS-------CCCCEECSSCS-
T ss_pred CcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC-CC-------CCceEEEcCCC-
Confidence 45789999997 67889999999999999999999999999998888887655 6666 43 24 69999996
Q ss_pred CCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCC-----------CCHHHH
Q psy9576 166 SNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKN-----------ISFSDL 229 (338)
Q Consensus 166 ~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~-----------~~f~dL 229 (338)
++++++|||||+|++++++++ +.+|+|+||+|+||++|. +.+| ++++|++++++|+. ++|+|+
T Consensus 543 s~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dl 621 (795)
T 2rhq_B 543 SEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIA 621 (795)
T ss_dssp CTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHH
T ss_pred chhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHH
Confidence 789999999999999999965 368999999999999873 3366 89999999999975 899999
Q ss_pred HHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeec
Q psy9576 230 KGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSG 309 (338)
Q Consensus 230 Kg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelg 309 (338)
||+++.+++.+ |. . ++|+|+++||+|||.+++|++ ++. +||+||+|||+|++++|++ ++ |||||+
T Consensus 622 Kg~le~ll~~l-G~-~--~~~~~~~~p~~hPGr~a~I~~-----~g~--~IG~~G~lHP~Vl~~~~l~---~~-~afEL~ 686 (795)
T 2rhq_B 622 KGVVDRVAEKL-NL-E--FSYKAGKIEGLHPGRTAIVSL-----EGQ--DIGFIGELHPQVAADNDLK---RT-YVFELN 686 (795)
T ss_dssp HHHHHHHHHHH-TC-C--CEEEECCCTTEEEEEEEEEEE-----TTE--EEEEEEEECHHHHHHTTCC---SE-EEEEEE
T ss_pred HHHHHHHHHHc-CC-c--EEEEECCCCcccCCcEEEEEE-----CCE--EEEEEEEECHHHHHHcCCC---Cc-EEEEEE
Confidence 99999999999 85 2 688899999999999999998 322 9999999999999999997 88 999999
Q ss_pred hhHHHHHHc
Q psy9576 310 LERLTMLRY 318 (338)
Q Consensus 310 lerlam~~~ 318 (338)
+|+|+|.+.
T Consensus 687 le~L~~~~~ 695 (795)
T 2rhq_B 687 YDAMMQVAV 695 (795)
T ss_dssp HHHHTTCCC
T ss_pred HHHHhhhcc
Confidence 999998654
No 16
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=100.00 E-value=1.3e-34 Score=262.01 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=155.5
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
+..+++.+.||++|+++||+|+.++++++.. .|+.++.+++ .+++.|.||+ ++++++|||||+|++++++++
T Consensus 4 d~~~~~~~~ir~~l~~~G~~Evitysf~~~~-~~~~~~~~~~------~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~ 75 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAA-YYDGLESYPS------KNLVMLLNPL-SADLNCMRQTLLFGGLESIAH 75 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGG-GGTTCSSSCG------GGCEEBSSGG-GCSCCEECSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCeEEeccccCCHH-HHHhhcccCc------CCeEEEeCCc-chhHHHHHHHhHHHHHHHHHH
Confidence 4567899999999999999999999998864 6888876543 2568999996 899999999999999999975
Q ss_pred C----CCCceEEEeeeEEEeCC-CC------CCCcceeEEEEEEEc-----------CCCCHHHHHHHHHHHHHHhccCC
Q psy9576 187 N----KPPIKVITSGRVYRIDS-DS------THSPMFHQIEGLWID-----------KNISFSDLKGVYLNFIRVFFESD 244 (338)
Q Consensus 187 ~----~~pirifeiG~Vyr~d~-d~------th~~~f~ql~~l~~g-----------~~~~f~dLKg~l~~ll~~lfg~~ 244 (338)
| .+++|+||+|+||+++. +. ++..+.++++++++| +.++|+|+||+|+.++..+ |.
T Consensus 76 N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l-g~- 153 (213)
T 3ig2_A 76 NANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL-GL- 153 (213)
T ss_dssp C------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT-TB-
T ss_pred HhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh-CC-
Confidence 3 56899999999999974 21 223466899999999 4589999999999999998 85
Q ss_pred Ce-eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 245 NI-QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 245 ~~-~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .++++++.+|+.|||.+++ ++ +| .+||++|+|||+|++++||+ .++|+|||++|.|
T Consensus 154 ~~~~~~~~~~~~~~~hPgr~a~-~~-~g------~~iG~~G~lhP~v~~~~~l~---~~v~~~Eldl~~l 212 (213)
T 3ig2_A 154 DLHSLVVGNLSDDIYSTALTVN-TK-GG------KRLATFGVVTKKMLKAFDVD---NEVYYADLNWKEL 212 (213)
T ss_dssp CGGGCEEEEECSSSEEEEEEEE-CT-TC------CEEEEEEEECHHHHHHTTCC---EEEEEEEEETGGG
T ss_pred CccceEEeeccCCCCCCCeEEE-eE-CC------cEEEEEeEECHHHHHHcCcC---CCeEEEEEEhHHh
Confidence 21 3789999999999999887 55 22 28999999999999999998 7999999999975
No 17
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=100.00 E-value=8.7e-34 Score=256.49 Aligned_cols=186 Identities=10% Similarity=0.088 Sum_probs=156.1
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
++.+++.+.||++|+++||+|+.++++++. ..++.++.+++ .+++.|.||+ ++++++||||++|++++++++
T Consensus 4 d~~~~~~~~ir~~L~~~G~~Evitysf~s~-~~~~~~~~~~~------~~~v~l~NPl-s~e~~vmRtsLlpgLL~~~~~ 75 (213)
T 3ica_A 4 DRRYKWQTVVSEQLVGAGFNEILNNSLTAG-SYYEGLKSHPR------EMAVELMNPL-SQELNCMRQTLLFGGLETLSH 75 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEG-GGGTTCSSSCG------GGCCBCSSBS-CSSEEEECSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCceeeeccCCCH-HHHhhhcccCc------CCeEEecCCc-cHHHHHHHHHhHHHHHHHHHH
Confidence 346789999999999999999999999886 47888876533 2458899996 899999999999999999964
Q ss_pred ----CCCCceEEEeeeEEEeCC-CC------CCCcceeEEEEEEEcC-----------CCCHHHHHHHHHHHHHHhccCC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DS------THSPMFHQIEGLWIDK-----------NISFSDLKGVYLNFIRVFFESD 244 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~------th~~~f~ql~~l~~g~-----------~~~f~dLKg~l~~ll~~lfg~~ 244 (338)
+.+++|+||+|+||+++. +. ++..+.++++++++|. .++|+|+||+|+.++..+ |.
T Consensus 76 N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l-gi- 153 (213)
T 3ica_A 76 NLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV-GI- 153 (213)
T ss_dssp HHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT-TC-
T ss_pred HHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh-CC-
Confidence 346799999999999873 21 1234668999999983 589999999999999998 85
Q ss_pred Ce-eEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHH
Q psy9576 245 NI-QIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERL 313 (338)
Q Consensus 245 ~~-~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerl 313 (338)
.. .++++++.+|+.|||.+++ .+ +|+ +||++|+|||+|++++||+ .++|+|||++|.|
T Consensus 154 ~~~~~~~~~~~~~~~hpgr~a~-~~-~g~------~iG~~G~lhP~v~~~~~l~---~~v~~~Eldl~~l 212 (213)
T 3ica_A 154 ETGAYTLKTADNDLYASAMEVK-TR-SGK------LLGTFGTVSTELIKRFEIE---QPVYFAELLWDAL 212 (213)
T ss_dssp CGGGEEEEECCCTTEEEEEEEE-ET-TCC------EEEEEEEECHHHHHHTTCC---SCEEEEEEEHHHH
T ss_pred CccceEEeeccCCCCCCCeEEE-eE-CCc------EEEEEeEECHHHHHHcCCC---CCeEEEEEEhHHh
Confidence 21 3789999999999999887 55 222 8999999999999999998 6899999999986
No 18
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=3.2e-33 Score=294.09 Aligned_cols=193 Identities=21% Similarity=0.325 Sum_probs=168.1
Q ss_pred ccccCCCCCCCC---CCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc
Q psy9576 88 KTNKIDITLPGR---GKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY 164 (338)
Q Consensus 88 ~~~~id~tlp~~---~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~ 164 (338)
--++|+.|+|.. ..+. ..||.+++.+.+|++|+++||+|+.++++++.... +.+ |.+ +++++|.||+
T Consensus 468 GydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l--~~~------~~~v~L~NPi 537 (785)
T 1b7y_B 468 GYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRF--RLD------PPRLLLLNPL 537 (785)
T ss_dssp CGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHT--TCC------CCSCEESSCS
T ss_pred CcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-Hhc--CCC------CCeEEEcCCC
Confidence 346789999976 4466 89999999999999999999999988888777554 555 322 3679999996
Q ss_pred cCCCcceEeccchHHHHHHHhc----C-CCCceEEEeeeEEEeCCCCCCCcceeEEEEEEEcCC----------CCHHHH
Q psy9576 165 VSNNKPLLRTHTSPMQIRYSKI----N-KPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKN----------ISFSDL 229 (338)
Q Consensus 165 ~~~~~~~LRt~lsp~~l~~l~~----~-~~pirifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~----------~~f~dL 229 (338)
++++++|||||+|++++++++ + .+|+|+||+|+||+ + ++++|++++++|+. ++|+|+
T Consensus 538 -s~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~------~e~~~lagl~~G~~~~~~w~~~~~vdf~dl 609 (785)
T 1b7y_B 538 -APEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E------REETHLAGLLFGEGVGLPWAKERLSGYFLL 609 (785)
T ss_dssp -STTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S------SEEEEEEEEEESSCBSCSSSSCCBCSHHHH
T ss_pred -chhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c------ChhhEEEEEEECCCcccccCccCCcCHHHH
Confidence 899999999999999999965 3 58999999999998 2 78899999999986 899999
Q ss_pred HHHHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeec
Q psy9576 230 KGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSG 309 (338)
Q Consensus 230 Kg~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelg 309 (338)
||+++.+++.+ |. +++|+|+++||+|||.+++|+| ++. +||++|+|||+|++++|++ ++|||||+
T Consensus 610 Kg~le~ll~~l-gi---~~~~~~~~~p~~hPGr~a~I~~-----~g~--~iG~~G~lHP~Vl~~~~l~----~v~afEl~ 674 (785)
T 1b7y_B 610 KGYLEALFARL-GL---AFRVEAQAFPFLHPGVSGRVLV-----EGE--EVGFLGALHPEIAQELELP----PVHLFELR 674 (785)
T ss_dssp HHHHHHHHHHH-TC---CCEEECCCCTTEEEEEEEEEEE-----TTE--EEEEEEEECHHHHHHTTCC----CCEEEEEE
T ss_pred HHHHHHHHHHc-CC---ceEEeecCCCcccCceEEEEEE-----CCE--EEEEEEEECHHHHHHCCCC----cEEEEEEE
Confidence 99999999999 84 5788899999999999999998 322 8999999999999999995 68999999
Q ss_pred hhHHH
Q psy9576 310 LERLT 314 (338)
Q Consensus 310 lerla 314 (338)
+| |+
T Consensus 675 Ld-L~ 678 (785)
T 1b7y_B 675 LP-LP 678 (785)
T ss_dssp ES-CC
T ss_pred ee-hh
Confidence 99 75
No 19
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.96 E-value=3.7e-29 Score=263.54 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=170.1
Q ss_pred ccccCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC
Q psy9576 88 KTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN 167 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~ 167 (338)
--++|+.++|......|...+.+.+.+.+|+.|+++||+|+.++++++.. .++.++ |. .+.+.|.||+ ++
T Consensus 470 GydnIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~-~~~~~~-~~-------~~~v~l~NPi-s~ 539 (795)
T 3pco_B 470 GYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPK-VQQMIH-PG-------VEALLLPSPI-SV 539 (795)
T ss_dssp CGGGSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECCCCSEECHH-HHHHHS-SS-------CCCCBCSSCS-CS
T ss_pred CcccCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHH-HHHhhC-CC-------CCeEEEcCCC-ch
Confidence 34678999998666666666667789999999999999999999998865 345554 32 1457899996 89
Q ss_pred CcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcC-----------CCCHHHHHH
Q psy9576 168 NKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDK-----------NISFSDLKG 231 (338)
Q Consensus 168 ~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~-----------~~~f~dLKg 231 (338)
++++||||++|++++++++ +.+++++||+|+||+++. ..++..+..+++++++|. .++|+|+||
T Consensus 540 e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg 619 (795)
T 3pco_B 540 EMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKG 619 (795)
T ss_dssp TTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHH
Confidence 9999999999999999964 356899999999999874 234555668999999983 479999999
Q ss_pred HHHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 232 ~l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
+++.++..+ |. ...++|+++.+|+.|||.+++|++ +|+ .||.+|+|||+|++++|++ .++|+|||++|
T Consensus 620 ~ve~ll~~l-g~-~~~~~~~~~~~~~~hPGrsA~I~~-~g~------~iG~~GelHP~v~~~~dl~---~~v~~~Eldld 687 (795)
T 3pco_B 620 DLESVLDLT-GK-LNEVEFRAEANPALHPGQSAAIYL-KGE------RIGFVGVVHPELERKLDLN---GRTLVFELEWN 687 (795)
T ss_dssp HHHHHTTTS-SC-CSSCCEECCCCTTEEEEEEEEECT-TTS------CCEEEEEECTTTTTTTCCC---SCEEEEEEEGG
T ss_pred HHHHHHHHc-CC-CcceEEEECCCCCCCCCCEEEEEE-CCE------EEEEEEEECHHHHHHcCCC---CCEEEEEEEHH
Confidence 999999988 83 135678888899999999999976 332 7888899999999999997 78999999999
Q ss_pred HHHH
Q psy9576 312 RLTM 315 (338)
Q Consensus 312 rlam 315 (338)
+|..
T Consensus 688 ~L~~ 691 (795)
T 3pco_B 688 KLAD 691 (795)
T ss_dssp GSSB
T ss_pred Hhhc
Confidence 9865
No 20
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.90 E-value=3.7e-23 Score=195.37 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCC-CCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHP-ARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hp-ar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
-.+.+.+.||++|.++||.||.+|.+++.. + |.+|| +....+.|.+.-. + ....||+ ||.+...+.-
T Consensus 17 ~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~---~----~~~~~~~~e~a~~f~~~~~--~-~~~~L~~--Spe~~~~~l~ 84 (294)
T 1nnh_A 17 IQTKILEYMTDFFVKEGFKWLLPVIISPIT---D----PLWPDPAGEGMEPAEVEIY--G-VKMRLTH--SMILHKQLAI 84 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEECCCCEESCC---C----CCCSCTTCCCCCCCEEEET--T-EEEEECS--CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEEEcc---c----hhccCCCCCcceeEEEEcC--C-CCEEecc--ChHHHHHHHh
Confidence 346889999999999999999999998862 2 45676 3222233443211 1 1257775 5655433322
Q ss_pred CCCCceEEEeeeEEEeCC---C-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccC-C-----Cee-E-------
Q psy9576 187 NKPPIKVITSGRVYRIDS---D-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFES-D-----NIQ-I------- 248 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d~---d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~-~-----~~~-~------- 248 (338)
...+.|+|++|+|||++. + .+|.|||||+++.+++. ++.++.++++.+++.+++. . ..+ +
T Consensus 85 ~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~--~~~~l~~~~e~l~~~l~~~~~~~~~~~i~~~~~~~r~~ 162 (294)
T 1nnh_A 85 AMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA--KMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFE 162 (294)
T ss_dssp HTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCSSCEEEE
T ss_pred hcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC--CHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceEeE
Confidence 234789999999999996 4 59999999999999986 5999999999999988531 0 001 0
Q ss_pred -----------------EEccCC-----CCCCCCc-----eEEEEEeecCCCCCCCeeEeeeee--cCHHHh----hhCC
Q psy9576 249 -----------------RFRPSY-----FPFTEPS-----AEIDIVFQDGPLKGNWLEISGAGQ--VNPKVL----CNMN 295 (338)
Q Consensus 249 -----------------r~~ps~-----fpf~~Ps-----~e~~i~~~~g~~~~gwieig~~G~--vhP~Vl----~~~g 295 (338)
..+|.+ +||+.|+ ...|++| ..||.||+++|+ .+|+++ +..|
T Consensus 163 y~ea~~~~g~~~er~~~~~~P~~v~~~P~pf~~~~d~~~~~~~Dl~~-----~~g~~Ei~~g~~r~~d~~~l~~~~~~~g 237 (294)
T 1nnh_A 163 YSEVLEEFGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLIL-----PYGYGEVASGGEREWEYEKIVAKIRKAG 237 (294)
T ss_dssp HHHHHHHTSSHHHHHHHCSSCEEEECCCCCTTBCEETTEECEEEEEE-----TTTTEEEEEEEEBCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCChHhhhhhcCCCEEEEcCChHHhCCCCCCeEEEEEEEE-----CCCcEEEecCeeecCCHHHHHHHHHHcC
Confidence 124555 8999987 7889988 446889999998 999985 5566
Q ss_pred CCCCCe-------------EEEEEeechhHHHHHHcCCCccccc
Q psy9576 296 LDPEKY-------------IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 296 i~~~~~-------------~~~afelglerlam~~~~i~diR~~ 326 (338)
++++.| |...||||+|||+|+.+|++|||+.
T Consensus 238 ~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdv 281 (294)
T 1nnh_A 238 LNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEV 281 (294)
T ss_dssp CCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHE
Confidence 543322 5677999999999999999999985
No 21
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.70 E-value=1.4e-16 Score=157.79 Aligned_cols=115 Identities=12% Similarity=0.047 Sum_probs=90.1
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH-
Q psy9576 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY- 183 (338)
Q Consensus 105 ~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~- 183 (338)
..+..+.+.+.||++|.+.||.|+.+|.+++. ..|+++++.++.+...+ ..||+| |.+...
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~----------~~e~~~~~f~~~~~~~~------~~Lr~S--pel~~~~ 195 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTG----------AVEGGATLFKLKYFDKY------AYLSQS--AQLYLEA 195 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESC----------CSSCGGGCCEEEETTEE------EEECSC--SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee----------cCCCCceeEEEeecCCc------EEeccC--hHHHHHH
Confidence 34667789999999999999999999999864 35778877555554433 689944 555432
Q ss_pred HhcCCCCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 184 SKINKPPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
|.. .+.|+|++|+|||++ .+. +|.|||+|+++.+++. ++.++..+++.+++.++
T Consensus 196 ~~~--g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l~ 251 (434)
T 1x54_A 196 AIF--GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWM--DLWDIMKVEEELVSYMV 251 (434)
T ss_dssp HHH--HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHH
T ss_pred Hhc--CccceEEEecceecCCCCCcccccEEEEeeEEEcCC--CHHHHHHHHHHHHHHHH
Confidence 332 267999999999999 454 7999999999999985 68999999998887764
No 22
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.48 E-value=1.2e-12 Score=129.45 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
+..+++.+.+|++|.+.||.|+.+|.+++. ..++++++-.+.+...+ ..||+|.--.+ +.|..
T Consensus 135 ~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----------~~e~~~~~f~~~~~~~~------~~L~~Spql~~-~~~~~ 197 (429)
T 1wyd_A 135 KIQSLALKAFRETLYKEGFIEIFTPKIIAS----------ATEGGAQLFPVIYFGKE------AFLAQSPQLYK-ELMAG 197 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEESS----------CSSTTCCCCEEEETTEE------EEECSCCHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEECCEEEee----------CCCCCceeEEEecCCce------EEecCCcHHHH-HHHHh
Confidence 456788999999999999999999999864 34666766444343322 57876533332 33443
Q ss_pred CCCCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
+ +.|+|++|+|||++ .+. +|.|||+|+++.+++. ++.++..+++.+++.++
T Consensus 198 g--~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l~ 250 (429)
T 1wyd_A 198 V--VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFA--DYNDVMQLLEKILHNIV 250 (429)
T ss_dssp H--HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHH
T ss_pred C--cCceEEEcccccccCCccccccceeeEeeeeecCC--CHHHHHHHHHHHHHHHH
Confidence 2 57999999999999 454 8999999999999985 58999998888887664
No 23
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.37 E-value=8.4e-12 Score=123.06 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH-HHH
Q psy9576 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI-RYS 184 (338)
Q Consensus 106 ~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l-~~l 184 (338)
.+..+.+.+.+|++|.+.||.|+.+|.+++. ..|+++++ |.+... + ....||+| |.+. +.+
T Consensus 125 ~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~----------~~e~~~~~---f~~~~~--g-~~~~L~~S--pel~~~~l 186 (422)
T 1n9w_A 125 LKVQAALVRGFRRYLDRQDFTEIFTPKVVRA----------GAEGGSGL---FGVDYF--E-KRAYLAQS--PQLYKQIM 186 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCC----------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCEEEEe----------CCCCCcee---EEEeeC--C-CcEEeeeC--HHHHHHHH
Confidence 4667889999999999999999999999764 24666654 333221 1 12577755 4332 333
Q ss_pred hcCCCCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 185 KINKPPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 185 ~~~~~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. . ..|+|++|+|||++ .+. +|.|||+|+++.+++.+ ++.++..+++.+++.++
T Consensus 187 ~~-g-~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-d~~dlm~l~e~ll~~l~ 242 (422)
T 1n9w_A 187 VG-V-FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA-DEEDLMRLEEALLAEML 242 (422)
T ss_dssp HH-H-HSEEEEEEEC-------------CCEEEEEEEESCS-SHHHHHHHHHHHHHHHH
T ss_pred hh-C-CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCC-CHHHHHHHHHHHHHHHH
Confidence 32 2 46999999999999 454 79999999999999841 46777777776665553
No 24
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=99.29 E-value=2.5e-10 Score=109.73 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeec--CCcc-CCCcceEeccchHHHH--HH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIK--NRYV-SNNKPLLRTHTSPMQI--RY 183 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~--np~~-~~~~~~LRt~lsp~~l--~~ 183 (338)
..++...||++|.+.||.||.+|.++.... ..- + ...|.+. .|.. ......||+| |.+. +.
T Consensus 39 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--------~~a--~--~~~F~~~~~~~~~~~~~~~yL~~S--pql~~k~l 104 (345)
T 3a5y_A 39 RAAIMAEIRRFFADRGVLEVETPCMSQATV--------TDI--H--LVPFETRFVGPGHSQGMNLWLMTS--PEYHMKRL 104 (345)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCC--------CCT--T--CCCCEEEECCSTTSCCEEEEECSC--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEecCC--------CCC--c--cceEEEEecCcccccCCCEeecCC--HHHHHHHH
Confidence 357889999999999999999999985421 100 0 0112221 1100 0011456655 5443 34
Q ss_pred HhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 184 SKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
|...- -|+|++|+|||++ .+++|.|||+|+++-.++ +++.++...++.+++.++
T Consensus 105 ~~~g~--~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~d~m~~~E~li~~v~ 159 (345)
T 3a5y_A 105 LVAGC--GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQVL 159 (345)
T ss_dssp HHTTC--CSEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred HHcCC--CcEEEEEcceeCCCCcccccchhheeeeeeeC--CCHHHHHHHHHHHHHHHH
Confidence 44443 3999999999999 589999999999999987 467788777777776654
No 25
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=99.22 E-value=4e-10 Score=113.04 Aligned_cols=112 Identities=20% Similarity=0.215 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~ 187 (338)
+.+...||++|.+.||.||.+|.+++. |...-++ .|.+..... .....||+| |.+. +.|..
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~---------~~Ga~a~----~F~~~~~~~-~~~~yLr~S--pqLylk~l~v~- 240 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAV---------AGGAAAR----PFITHHNAL-DMTLYMRIA--IELHLKRLIVG- 240 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESS---------CCSSSSC----CCEEEETTT-TEEEEECSC--SHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEec---------CCCCccc----ceEecccCC-CceeEEecC--HHHHHHHHhhc-
Confidence 356788999999999999999999864 1111111 233221111 122578855 5443 22332
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
..-|+|++|+|||++ .+.+|.|||+|+++.+++ +++.|+..+++.+++.++
T Consensus 241 -G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af--~d~~dlm~l~E~ll~~l~ 292 (493)
T 3a74_A 241 -GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAY--ADFRDIMKLTENLIAHIA 292 (493)
T ss_dssp -TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred -ccCceEEECccccCCCCCcccCCceeEEEEEecC--CCHHHHHHHHHHHHHHHH
Confidence 235999999999999 578999999999999988 467888888777776653
No 26
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=99.20 E-value=4.6e-10 Score=112.87 Aligned_cols=111 Identities=21% Similarity=0.288 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~ 187 (338)
.++...||++|.+.||.||.+|.+++. |...-++ .|.+..... .....||+| |.+. +.|...
T Consensus 187 s~i~~~iR~f~~~~gFlEVeTPiL~~~---------~~Ga~ar----~F~t~~~~~-~~~~yL~~S--pqLylk~L~v~G 250 (504)
T 1e1o_A 187 SKILAAIRQFMVARGFMEVETPMMQVI---------PGGASAR----PFITHHNAL-DLDMYLRIA--PELYLKRLVVGG 250 (504)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESS---------CCSSCCC----CCEEEETTT-TEEEEECSC--SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEec---------CCCCccc----ceEeccCCC-CceEEeccC--HHHHHHHHhhcC
Confidence 356788999999999999999999764 2111112 132211111 122578865 4443 233333
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
- -|+|++|+|||++ .+.+|.|||+|+++.+++ +++.|+..+++.+++.+
T Consensus 251 ~--~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~dlm~l~E~li~~~ 300 (504)
T 1e1o_A 251 F--ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 300 (504)
T ss_dssp C--CEEEEEEEEECCCCCCC-CCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred C--CcEEEEcccccCCCCCccccCceeeeeeeecC--CCHHHHHHHHHHHHHHH
Confidence 2 4999999999999 588999999999999987 46778877777777655
No 27
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=99.16 E-value=3.7e-09 Score=107.95 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~~ 187 (338)
.++...||++|.+.||.||.||.++... |+. || + |.+.......++..||+ ||.+.. .|..+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~--------~eG--Ar---~-F~v~~~~~~~~~y~L~q--SPQl~kq~Lmv~G 211 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKST--------PEG--AR---D-FLVPYRHEPGLFYALPQ--SPQLFKQMLMVAG 211 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCC--------SSS--SC---C-CEEECTTSTTEEEECCS--CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCC--------CCC--CC---C-ccccccccCCceeECcc--CHHHHHHHHHHhc
Confidence 4678899999999999999999997431 111 22 1 32211100112234765 466643 34444
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-. |+|++|+|||.+ .+++|.|||+|+++-++. +++.|+..+++.+++.++
T Consensus 212 ~~--rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i~ 262 (580)
T 1l0w_A 212 LD--RYFQIARCFRDEDLRADRQPDFTQLDLEMSF--VEVEDVLELNERLMAHVF 262 (580)
T ss_dssp CS--EEEEEEEEECCCCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHH
T ss_pred cC--CeEEEeceeeCCCCCCCcCCCccceeeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 999999999999 588999999999999987 457777777776665553
No 28
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=99.15 E-value=1.1e-09 Score=110.56 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCCCC
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKPP 190 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~~p 190 (338)
++...||++|.+.||.||.+|.+++.. ....|+. |.+..... .....||+|.--.+-+.|...-
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~---------gGa~a~~----F~t~~~~~-~~~~yL~~SpqL~lk~liv~g~-- 244 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP---------GGAVAKP----FITYHNEL-DMNLYMRIAPELYHKMLVVGGI-- 244 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC---------CSSSCCC----CEEEETTT-TEEEEECSCSHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC---------CCccccc----eeeecccC-CcceEeeCCHHHHHHHHHhcCc--
Confidence 467789999999999999999997642 1111221 32211111 1125788663332223444433
Q ss_pred ceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 191 IKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 191 irifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|+|++|+|||++ .+.+|.|||+|+++.++. .++.|+..+++.+++.++
T Consensus 245 ~rVyeig~~FR~E~~~trH~pEFtmlE~e~af--~d~~dlm~l~E~li~~v~ 294 (521)
T 3bju_A 245 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYHDLMEITEKMVSGMV 294 (521)
T ss_dssp CEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeCCCCCCccchhhhhhhhhhhc--CCHHHHHHHHHHHHHHHH
Confidence 3999999999999 578999999999999987 468888888888876653
No 29
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=99.13 E-value=3.6e-09 Score=104.67 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~~ 187 (338)
..+...+|++|.+.||.||.+|.+++.. ++ .+.+ .|.+.-. + ....||+| |.+.. .|...
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~--------~e--g~~~---~f~~~~~--~-~~~yL~~S--pql~~q~l~~~g 202 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATA--------TE--GGTE---LFPMKYF--E-EDAFLAQS--PQLYKQIMMASG 202 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC--------SS--CSSS---CCEEEET--T-EEEEECSC--SHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCC--------CC--CCcc---ceeEeeC--C-ccEEEecC--hHHHHHHHHhcC
Confidence 4778899999999999999999997641 11 1222 2332211 0 11467655 55532 22232
Q ss_pred CCCceEEEeeeEEEeC-CC-CCCCcceeEEEEEEEcCCCC-HHHHHHHHHHHHHHh
Q psy9576 188 KPPIKVITSGRVYRID-SD-STHSPMFHQIEGLWIDKNIS-FSDLKGVYLNFIRVF 240 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d-~th~~~f~ql~~l~~g~~~~-f~dLKg~l~~ll~~l 240 (338)
--|+|++|+|||.+ .+ ..|.|||+|+++.+++ ++ +.|+...++.+++.+
T Consensus 203 --~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~--~~~~~d~m~~~E~li~~~ 254 (438)
T 3nem_A 203 --LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF--IEDEEEVMSFLERLVAHA 254 (438)
T ss_dssp --CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEES--CSSHHHHHHHHHHHHHHH
T ss_pred --CCceEEEcceEECCCCCCcccccceeeeeeeecc--CccHHHHHHHHHHHHHHH
Confidence 34999999999999 44 4799999999999887 34 677777777666544
No 30
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.10 E-value=2.9e-09 Score=107.62 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee---cCCccCCCcceEeccchHHHH--HH
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI---KNRYVSNNKPLLRTHTSPMQI--RY 183 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i---~np~~~~~~~~LRt~lsp~~l--~~ 183 (338)
...+...||++|...||.||.+|.+++..- + --++ .|.+ ..+ ..||+| |.+. +.
T Consensus 247 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--e-------gga~----~F~v~~~~~~------~yL~~S--pql~~k~l 305 (548)
T 3i7f_A 247 QSACCGLFREFLTSQKFVEIHTPKLIGCSS--E-------GGSN----IFEVKYFDRK------AYLAQS--PQLYKQMA 305 (548)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSBC--------------------------------------CCBCSC--THHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEecccC--C-------CCcc----eeEEecCCCc------eEeccC--HHHHHHHH
Confidence 357788889999999999999999976421 1 0011 1221 222 466655 5554 44
Q ss_pred HhcCCCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEE
Q psy9576 184 SKINKPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWI 220 (338)
Q Consensus 184 l~~~~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~ 220 (338)
|...- -|+|++|+|||++ . +.+|+|||+|+++.+.
T Consensus 306 l~~g~--~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~a 342 (548)
T 3i7f_A 306 IMGDF--RKVFEVGPVFRAENSNTRRHLTEFEGLDIEME 342 (548)
T ss_dssp HTTTC--CEEEEEEEECCCSCCCSSSCCSCEEEEEEEEE
T ss_pred HhcCc--CcEEEEeeeEecCCCCCCCcchhhhchhhhhh
Confidence 54433 4999999999999 4 4799999999998765
No 31
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=99.06 E-value=7.7e-09 Score=102.31 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++...||++|.+.||.||.+|.++... ++.+ . +.|.++-. .....||.|.--.+-..|. .
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~--------~eG~--~---~~F~~~~~---g~~~~L~~SpqLylq~l~~-g- 196 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQ--------VEGG--S---TLFNLDYF---GEQSFLTQSSQLYLETCIP-T- 196 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCC--------SSCT--T---SCCEEEET---TEEEEECSCSHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeecc--------CCCc--h---hceeeccC---CcccccCCChHHHHHHhhh-c-
Confidence 35788999999999999999999986431 1111 1 12433211 1114677663222222332 2
Q ss_pred CCceEEEeeeEEEeCC-C-CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRIDS-D-STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-d-~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
--|+|++|+|||++. + .+|.|||+|+++.+++ +++.|+...++.+++.+
T Consensus 197 -~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af--~d~~d~m~~~E~li~~~ 247 (435)
T 2xgt_A 197 -LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPF--ITLDDLMEKIEELVCDT 247 (435)
T ss_dssp -HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred -cCceEEEecceecCCCCccccccceeEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 239999999999994 5 4899999999999988 46788877777776554
No 32
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=99.06 E-value=5.8e-09 Score=103.68 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++...||++|.+.||.||.+|.++...- + .+. +.|.++-- + ....||+|.--.+-..+..
T Consensus 159 Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~--------e--Gg~---~~f~~~~~--~-~~~~L~~SpqL~lq~l~~g-- 220 (456)
T 3m4p_A 159 RSEIQWYFRKYYHDNHFTEIQPPTIVKTQC--------E--GGS---TLFKLQYF--N-EPAYLTQSSQLYLESVIAS-- 220 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEC----------------C---CCCEEEET--T-EEEEECSCCHHHHHTTHHH--
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeecCCC--------C--Ccc---cccccccc--C-CCcccccCHHHHHHHHHhc--
Confidence 467889999999999999999999864311 0 011 11222211 0 1146776532222122222
Q ss_pred CCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
--|+|++|+|||++ . +.+|.|||+|+++.+++. ++.|+...++.+++.+
T Consensus 221 -~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~--d~~d~m~~~E~li~~~ 271 (456)
T 3m4p_A 221 -LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFI--SFEDLLNHLEDLVCTV 271 (456)
T ss_dssp -HSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESC--CHHHHHHHHHHHHHHH
T ss_pred -cCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 23899999999999 4 479999999999999874 6778777777776554
No 33
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.02 E-value=2.4e-08 Score=100.02 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+.+.+.+|++|.+.||.||.+|.++... . ..-| +.|.+... .....||+|.--.+-+.|..
T Consensus 181 rs~i~~~ir~~~~~~gF~EV~TPil~~~~-------~--~~ga----~~f~~~~~---~~~~~L~~Spql~~k~l~~~-- 242 (487)
T 1eov_A 181 QAGVCELFREYLATKKFTEVHTPKLLGAP-------S--EGGS----SVFEVTYF---KGKAYLAQSPQFNKQQLIVA-- 242 (487)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSC-------S--SSSS----CCCEEEET---TEEEEECSCTHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhCCcEEEeCCEEEEec-------C--CCCc----ccceeccC---CccEEcccChHHHHHHHHhc--
Confidence 35678889999999999999999997641 1 1111 22444322 11257886532222222332
Q ss_pred CCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEE-cCCCCHHHHHHHHHHHH
Q psy9576 189 PPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWI-DKNISFSDLKGVYLNFI 237 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~-g~~~~f~dLKg~l~~ll 237 (338)
..-|+|++|+|||.+ . ..+|.|||+|+++-+. +.+ +.++..+++.++
T Consensus 243 g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~--~~dlm~l~E~ll 292 (487)
T 1eov_A 243 DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH--YHEVLDTLSELF 292 (487)
T ss_dssp TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC--THHHHHHHHHHH
T ss_pred CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcC--HHHHHHHHHHHH
Confidence 245999999999999 4 3689999999998654 322 244444444444
No 34
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.78 E-value=5.5e-07 Score=89.76 Aligned_cols=126 Identities=11% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccC-CCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~-~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.++++|...||+|+.+|.++... .|..- +-..++.. .+.|.+.+. + .+..+||+.++|...+....
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~e-l~~~~~G~~~d~~~---~~my~~~D~--~~g~~l~LRPd~t~~~ar~~~~ 122 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTP-LFTRGIGEVTDIVE---KEMYSFVDA--LNGENLTLRPENTAAVVRAAIE 122 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHHHHTCTTSHHHH---HTCCEEECT--TTCCEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH-HhhhccCCcccccc---cceEEEecC--CCCCEEEeCcccHHHHHHHHHH
Confidence 46788999999999999999999997653 33322 21111111 134655443 2 44579999999999998754
Q ss_pred C----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHh
Q psy9576 187 N----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVF 240 (338)
Q Consensus 187 ~----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~l 240 (338)
+ ..|+|+|++|+|||.+ ....+..+|+|.++=+.|.+-.. .++..++..+++.+
T Consensus 123 ~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~l 183 (467)
T 4e51_A 123 HNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDL 183 (467)
T ss_dssp TTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHc
Confidence 2 3599999999999998 45577889999998888743222 22334444444444
No 35
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.73 E-value=1.3e-07 Score=90.65 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=94.7
Q ss_pred CCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH
Q psy9576 104 GGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182 (338)
Q Consensus 104 G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~ 182 (338)
......+.+.+.++++|...||+|+.+|.++.. ..|.. +.--.+.... +.|.+.+. +....+||+.++|..+|
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~-el~~~s~~g~~~~~~~---~my~~~D~--~g~~l~LRpd~T~~~aR 107 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT-QLYTALESNGKTFNQE---KMFQFIKH--EGQSITLRYDFTLPLVR 107 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHHHHCSSSCCCTT---SCCEEECT--TCCEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcH-HHHhhccCCccccccc---cEEEEECC--CCCEEecCCCCcHHHHH
Confidence 345567889999999999999999999999875 34543 2211122222 33666554 34557999999999999
Q ss_pred HHhcC--CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 183 YSKIN--KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 183 ~l~~~--~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
....+ ..|+|+|++|+|||.+ ....+..+|+|+++-+.|.+... .++..++..+++.+ |.
T Consensus 108 ~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~l-gl 172 (344)
T 1z7m_A 108 LYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL-GL 172 (344)
T ss_dssp HHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CC
Confidence 88654 3699999999999998 45678899999999999865322 46777788888887 86
No 36
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.61 E-value=1.5e-07 Score=94.96 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcCC
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKINK 188 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~~ 188 (338)
++...||++|.+.||.||.+|.+++. |..-.++ .|.......+ ....||+| |.+. +.|...-
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~---------~gGA~a~----pF~t~~n~~~-~~~yL~~S--pqLylk~L~v~G~ 272 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPI---------PGGAAAK----PFVTHHNALD-MEMFLRIA--PELYLKRLIVGGF 272 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS---------CCSSSSC----CCEEEETTTT-EEEEECSC--SHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecc---------CCCCccc----ccccccccCC-cceecccC--HHHHHHHHHhcCC
Confidence 66788999999999999999999753 2111112 1211101001 11467765 5553 3344433
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-|+|++|+|||++ .+.+|.|||+|+++.++. +++.|+..+++.+++.++
T Consensus 273 --~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af--~d~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 273 --ERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY--TDYRWLMDFTERLIRQAA 322 (529)
T ss_dssp --SEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred --CcEEEeehheecCCCCCCcccHhHhhhhhhhc--CCHHHHHHHHHHHHHHHH
Confidence 3999999999999 588999999999999987 578999888888887653
No 37
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.61 E-value=6.8e-07 Score=86.66 Aligned_cols=128 Identities=14% Similarity=0.100 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
...+.+.+.++++|...||+|+.+|.++.. ..|..-+ ++.. ..+.|.+.+. +.+..+||+.++|..+|.+.+
T Consensus 38 ~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~-el~~~~g---~~~~--~~~my~~~D~--~g~~l~LRpd~T~~~aR~~~~ 109 (373)
T 3rac_A 38 KRRRAVETRLLSFVEDAGYEPVTSGLFEYV-DTLLRAR---SPES--SRDWIRLFDG--GGDAVALRPEMTPSIARMAAP 109 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHTTS---CTTS--CCCCCBCCCC--SSSCEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCceeeH-HHHhhcC---Cccc--hhceEEEECC--CCCEEEECCcCHHHHHHHHHh
Confidence 446788999999999999999999999764 3444321 2222 0234666554 345579999999999998754
Q ss_pred ----CCCCceEEEeeeEEEeC-C------CCCCCcceeEEEEEEEcCC-CCH--HHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRID-S------DSTHSPMFHQIEGLWIDKN-ISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d-~------d~th~~~f~ql~~l~~g~~-~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|+|+|++|+|||.+ . ...+..+|+|+++=+.|.. -.. .++..++..+++.+ |.
T Consensus 110 ~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~l-gl 179 (373)
T 3rac_A 110 RVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAA-GV 179 (373)
T ss_dssp HHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH-TC
T ss_pred ccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHc-CC
Confidence 35799999999999998 4 4567889999999999876 223 35667777788887 75
No 38
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=98.61 E-value=6.5e-05 Score=75.27 Aligned_cols=196 Identities=14% Similarity=0.131 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcC-CCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALN-SPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~-~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
...+.+.+++.+...||+|+.+|.+.+... +..-+ .|... . .+.|.+... ..+-.+||++.-+.+......
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l-~~~sG~~~~f~--e--~emf~v~~~--~~~~l~L~PTaE~~~~~l~~~~ 294 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVV-FEGCGMTPNAK--P--SQIYNIDPS--RFEDLNLAGTAEVGLAGYFMDH 294 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHH-HHHHTCCSSSS--S--CSSCBBCTT--TSSSCEECSSHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HHhhcCCCccC--c--cccEEEecC--CCCeEEECCcCcHHHHHHHhhc
Confidence 455677888888999999999999987643 33322 23211 1 144666432 122357898766666555432
Q ss_pred ----CCCCceEEEeeeEEEeCCC-------CCCCcceeEEEEEEEcCC------CCHHHHHHHHHHHHHHhccCCCeeEE
Q psy9576 187 ----NKPPIKVITSGRVYRIDSD-------STHSPMFHQIEGLWIDKN------ISFSDLKGVYLNFIRVFFESDNIQIR 249 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~d-------~th~~~f~ql~~l~~g~~------~~f~dLKg~l~~ll~~lfg~~~~~~r 249 (338)
...|++++++|.|||.+.. -....+|.|.++...... -.+..+....+.+++.| |. ...+.
T Consensus 295 i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~L-gL-pyrvv 372 (501)
T 1wle_A 295 SVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTEL-GL-HFRVL 372 (501)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEE
T ss_pred cCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHC-CC-cEEEE
Confidence 3579999999999999832 234578999999888654 34677888888899887 85 22221
Q ss_pred EccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-C--eEEEEEeechhHHH
Q psy9576 250 FRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-K--YIGFAFGSGLERLT 314 (338)
Q Consensus 250 ~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~--~~~~afelglerla 314 (338)
..++-.-+...+.+.|+.++... ..+|.||+.|...----.+.+++. .+ + +...+.+++++|+.
T Consensus 373 ~l~tgdlg~~a~~~~DiE~w~p~-~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~R~l 444 (501)
T 1wle_A 373 DMPTQELGLPAYRKFDIEAWMPG-RGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLL 444 (501)
T ss_dssp ECCGGGSTTTCSEEEEEEEEETT-TTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHHHHH
T ss_pred EccCcccCCchhheecHhhcccc-cccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHHHHH
Confidence 12322111112344444333111 346889998875542233444441 01 1 23344567899954
No 39
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.58 E-value=4.8e-07 Score=92.51 Aligned_cols=112 Identities=16% Similarity=0.235 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~~ 187 (338)
.++...||++|.+.||.||.+|.++... |+. || + |.+.......++..||+ ||.+.. .|..+
T Consensus 142 s~i~~~iR~fl~~~gFlEVeTPiL~~s~--------~eG--Ar---~-F~v~~~~~~~~~y~L~q--SPQl~kq~Lmv~G 205 (585)
T 1c0a_A 142 AKITSLVRRFMDDHGFLDIETPMLTKAT--------PEG--AR---D-YLVPSRVHKGKFYALPQ--SPQLFKQLLMMSG 205 (585)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCC--------SSS--SC---C-CEEECSSSTTCEEECCS--CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCC--------CCC--Cc---c-ceecccccCCceEeCcc--CHHHHHHHHHhcC
Confidence 4678899999999999999999997431 111 22 1 33211100122334775 466543 34444
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
-. |+|++|+|||.+ .+++|.|||+|+++-++. +++.|+..+++.+++.++
T Consensus 206 ~~--rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i~ 256 (585)
T 1c0a_A 206 FD--RYYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRHLW 256 (585)
T ss_dssp CC--EEEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHH
T ss_pred CC--ceEEEeceeecCCCCCCcCcccceeeeeecC--CCHHHHHHHHHHHHHHHH
Confidence 33 999999999999 578899999999999987 468899888888887665
No 40
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.56 E-value=1.1e-06 Score=86.05 Aligned_cols=125 Identities=13% Similarity=0.224 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+.++++|...||+|+.+|.++.. ..|..-+ ++... +.|.+.+. +.+..+||+-++|...|.+.+
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~-el~~~~g---~~~~~---~my~f~D~--~g~~l~LRpd~T~~~aR~~~~~~ 97 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYY-ETVGVVS---AILDQ---QLFKLLDQ--QGNTLVLRPDMTAPIARLVASSL 97 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEET-TTHHHHS---SSCGG---GSCEEECT--TSCEEEECSCSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccH-HHHhhcC---Ccccc---ceEEEECC--CCCEEEECCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999765 3444332 22222 44776555 345579999999999998754
Q ss_pred --CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 --NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|+|+|++|+|||.+ ....+..+|+|+++=+.|.+-.. .++..++..+++.+ |.
T Consensus 98 ~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~l-gl 158 (400)
T 3od1_A 98 KDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRA-GL 158 (400)
T ss_dssp SSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT-TC
T ss_pred ccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHC-CC
Confidence 34699999999999998 45678899999999999865333 35667777888887 85
No 41
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.55 E-value=3.1e-05 Score=76.21 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+.+++.+...||+++.+|.+++.. .+..-+.-+.. ..+.|.+.+. ..+||+...+.+.+....
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sG~~~~f----~~emy~~~~~-----~l~LrPt~e~~i~~~~~~~i~ 245 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPE-ILIGTGQLPKF----EEDLYKCERD-----NLYLIPTAEVPLTNLYREEIL 245 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH-HHHHHSCTTTT----GGGSCBCTTT-----CCEECSSTHHHHHGGGTTEEE
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHH-HHHhcCCCCcC----hhhheEecCC-----eEEEcCCCcHHHHHHHHhhcc
Confidence 3456778888999999999999998764 44443321111 1234555432 268999888887776543
Q ss_pred --CCCCceEEEeeeEEEeCC-C-------CCCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccCCCeeEE-Ec
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D-------STHSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFESDNIQIR-FR 251 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d-------~th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~~~~~~r-~~ 251 (338)
...|+|++.+|+|||.+. . -....+|+|+++...+..- .+..+......+++.+ |. . ++ ..
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~L-GL-~--~rvv~ 321 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLL-GL-P--YRVVE 321 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHH-TC-C--EEEEE
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHC-CC-c--eEEEE
Confidence 346999999999999984 2 1256799999998876432 2467888888999988 86 2 33 11
Q ss_pred -cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C--C----CeEEEEEeechhHHHH
Q psy9576 252 -PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P--E----KYIGFAFGSGLERLTM 315 (338)
Q Consensus 252 -ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~--~----~~~~~afelglerlam 315 (338)
++-..+...+...|+.++... ..+|.|+..|+-..----+.+++. . . -+.++..+++++|+.-
T Consensus 322 l~~gdlg~~a~~~~diE~w~p~-~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~R~i~ 394 (425)
T 2dq3_A 322 LCTGDLGFSAAKTYDIEVWFPS-QNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLA 394 (425)
T ss_dssp CCTTTCCTTCSEEEEEEEEEGG-GTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHH
T ss_pred ecCCcCCChHHhccchhhccch-hHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEEEEeccccHHHHHHH
Confidence 222111112244444332111 246888888876532222333331 1 1 1234455566999654
No 42
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.51 E-value=1.3e-06 Score=85.52 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHH
Q psy9576 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183 (338)
Q Consensus 105 ~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~ 183 (338)
.....+.+.+.+++.|...||+|+.+|.+++.. .|..- +-..++... +.|.+.+. +.+..+||+-++|...|.
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e-l~~~~~G~~~d~~~~---em~~~~D~--~g~~l~Lrpd~t~~~ar~ 89 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQ-VFEKGVGAATDIVRK---EMFTFQDR--GGRSLTLRPEGTAAMVRA 89 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHH-HhhhccCCccccccc---ceEEEECC--CCCEEeeCCcchHHHHHH
Confidence 344577899999999999999999999997653 33321 211112222 34666554 345579999999999998
Q ss_pred HhcC-----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCC--HHHHHHHHHHHHHHhccC
Q psy9576 184 SKIN-----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNIS--FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 184 l~~~-----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~--f~dLKg~l~~ll~~lfg~ 243 (338)
..++ ..|+|+|.+|+|||.+ ....+..+|+|.++-+.|.+.. -.++..++..+++.+ |.
T Consensus 90 ~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~l-gl 156 (421)
T 1h4v_B 90 YLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL-GL 156 (421)
T ss_pred HHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHc-CC
Confidence 7532 4599999999999988 4556788999999988875422 235667777778877 75
No 43
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.49 E-value=1e-06 Score=87.74 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=98.3
Q ss_pred ccccCCCCCCCCCCCC--CCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCcc-ceeecCCc
Q psy9576 88 KTNKIDITLPGRGKNK--GGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHD-TFYIKNRY 164 (338)
Q Consensus 88 ~~~~id~tlp~~~~~~--G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~d-t~~i~np~ 164 (338)
++.++....|.+.... ....-.+.+.+.++++|...||+++.+|.++.. ..|..-+ ..+ .+ .|.+.+..
T Consensus 6 ~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~-~~~~~~G-~~~------ke~m~~~~d~~ 77 (465)
T 3net_A 6 KNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERL-EVLQAKG-NQG------DNIIYGLEPIL 77 (465)
T ss_dssp ---CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHGGG-CC--------CBEEEEEEEC
T ss_pred CCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccH-HHHhccC-CCC------ccceEEEeccc
Confidence 3445666666543322 112224678999999999999999999999765 3444333 211 23 56664430
Q ss_pred --c-----------CCCcceEeccchHHHHHHHhc----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH
Q psy9576 165 --V-----------SNNKPLLRTHTSPMQIRYSKI----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF 226 (338)
Q Consensus 165 --~-----------~~~~~~LRt~lsp~~l~~l~~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f 226 (338)
. +....+||+-++|...|.+.. ...|+|+|.+|+|||.+ ....+..+|+|+++=+.|.+...
T Consensus 78 ~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~ 157 (465)
T 3net_A 78 PPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLS 157 (465)
T ss_dssp ----------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCC
T ss_pred ccccccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCcc
Confidence 0 134579999999999998754 24699999999999998 45678899999999999865443
Q ss_pred H----HHHHHHHHHHHHhccC
Q psy9576 227 S----DLKGVYLNFIRVFFES 243 (338)
Q Consensus 227 ~----dLKg~l~~ll~~lfg~ 243 (338)
. ++..++..+++.+ |.
T Consensus 158 a~~DaEvi~l~~~~l~~l-gl 177 (465)
T 3net_A 158 LLYDAQMPAIITEIFEAV-NI 177 (465)
T ss_dssp HHHHHHHHHHHHHHHHHH-TC
T ss_pred chhhHHHHHHHHHHHHHc-CC
Confidence 4 5778888888888 86
No 44
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.48 E-value=6.7e-07 Score=87.49 Aligned_cols=130 Identities=12% Similarity=0.192 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
.....+.+.+++.|...||+|+.+|.+++.. .|..- +-..++... +.|.+.+. +.+..+||+.++++..+...
T Consensus 17 ~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~~~g~~~~~~~~---~m~~~~D~--~g~~~~Lrp~~t~~~~r~~~ 90 (420)
T 1qe0_A 17 KKWRYIENQLDELMTFYNYKEIRTPIFESTD-LFARGVGDSTDVVQK---EMYTFKDK--GDRSITLRPEGTAAVVRSYI 90 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECBCCSEEEHH-HHCC--------------CCEEECHH--HHCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEccCcccchHH-HhhhccCCccchhhh---heEEEEcC--CCCEEEeCCCChHHHHHHHH
Confidence 3467889999999999999999999997753 33321 111112222 33666432 12337999999999999874
Q ss_pred c------CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 I------NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~------~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
. ...|+|++.+|+|||.+ ....+..+|+|.++-+.|.+-.. .++..++..+++.+ |.
T Consensus 91 ~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~l-gl 156 (420)
T 1qe0_A 91 EHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSF-GL 156 (420)
T ss_dssp HTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred hccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHc-CC
Confidence 2 24599999999999998 45567889999999998865333 56667778888887 86
No 45
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=98.46 E-value=4.2e-05 Score=75.19 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+.+++.+...||+|+.+|.+.+.. .+.+-+.-++. ..+.|.+.+ +..+||++-.+.+......
T Consensus 170 ~aL~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sG~~~~f----~~emy~~~d-----~~l~L~Pt~e~~~~~~~~~~~~ 239 (421)
T 1ses_A 170 LALLRFAMDFMARRGFLPMTLPSYAREK-AFLGTGHFPAY----RDQVWAIAE-----TDLYLTGTAEVVLNALHSGEIL 239 (421)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHH-HHHHHTCTTTT----GGGSCBBTT-----SSEEECSSTHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCceecHH-HHHhcCCCCcC----chhcEEEcC-----CeEEEeecCcHHHHHHhccccc
Confidence 4567778888889999999999998764 44443332221 123355543 2268998877777666543
Q ss_pred --CCCCceEEEeeeEEEeCC-C---CC----CCcceeEEEEEEEcCC------CCHHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D---ST----HSPMFHQIEGLWIDKN------ISFSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d---~t----h~~~f~ql~~l~~g~~------~~f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
...|+|++++|+|||.+. . .+ ...+|+|+++...... ..+..+......+++.| |. .++.
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~L-GL---~~rv 315 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL-EL---PYRL 315 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TC---CEEE
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHC-CC---ceEE
Confidence 346999999999999983 1 12 5589999999887654 23457888888999888 85 3332
Q ss_pred c--cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C-CC----eEEEEEeechhHHHH
Q psy9576 251 R--PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P-EK----YIGFAFGSGLERLTM 315 (338)
Q Consensus 251 ~--ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~-~~----~~~~afelglerlam 315 (338)
. ++-.-+...+.+.|+.++... ..+|.||..|.-..---.+.+++. + .+ +...+-+++++|+.-
T Consensus 316 v~l~t~dlg~~a~~~~DiE~w~p~-~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~R~l~ 389 (421)
T 1ses_A 316 VEVATGDMGPGKWRQVDIEVYLPS-EGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILA 389 (421)
T ss_dssp EECCHHHHCTTCSEEEEEEEEETT-TTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHH
T ss_pred EEecCccCCchhhhcccHhheech-hccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHHHHHH
Confidence 1 111001111234444332111 346888877765531112223331 0 11 234556677898653
No 46
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.43 E-value=1.8e-06 Score=85.78 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN 187 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~ 187 (338)
..+.+.+.++++|...||+|+.+|.++... .|.. ...|-. ..+.|.+.+. +....+||+-++|..+|....+
T Consensus 45 ~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e-l~~~---~~G~~~--~~~my~f~D~--~g~~l~LRpd~T~~~aR~~~~~ 116 (456)
T 3lc0_A 45 CRRHLFDVFHATAKTFGFEEYDAPVLESEE-LYIR---KAGEEI--TEQMFNFITK--GGHRVALRPEMTPSLARLLLGK 116 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGG-GGCC---CSCCHH--HHTCEEEECS--SSCEEEECSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCcEeehh-hhcc---ccccch--hhceEEEEcC--CCCEEecCCcCHHHHHHHHHhc
Confidence 356789999999999999999999997642 2321 111110 1244666554 3455799999999999988653
Q ss_pred ----CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHH--HHHHHHHHHHHHhccC
Q psy9576 188 ----KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFS--DLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ----~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~--dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|++|+|||.+ ....+..+|+|+++=+.|.+.... ++..++..+++.+ |.
T Consensus 117 ~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l-gl 178 (456)
T 3lc0_A 117 GRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL-GL 178 (456)
T ss_dssp CTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT-TC
T ss_pred CcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc-CC
Confidence 2499999999999998 456788999999999998754444 4667777888887 85
No 47
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.43 E-value=1e-05 Score=80.41 Aligned_cols=198 Identities=16% Similarity=0.183 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.|...||+++.+|.+++.. .|.+- ..|-..-..+.|.+..... ..+..+||+...++..+...+
T Consensus 41 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~~---~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 41 RRYTFEIIRNLLDESGHDEALFPMLIPED-LLAKE---AEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHHHH---CSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCcccCHH-HHhhh---cCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 56788999999999999999999998753 35430 1222111123355543200 024479999999999888753
Q ss_pred -----CCCCceEEEeeeEEEeC-CCC-C--CCccee-EEEEEEEcCC-----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRID-SDS-T--HSPMFH-QIEGLWIDKN-----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d~-t--h~~~f~-ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
...|+|++.+|+|||.+ .+. - ...+|+ |.++-+.+.+ ..+..+..+...+++.| |. ...+...
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~L-Gl-~~~~~~~ 194 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL-GI-PYLISKR 194 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEEE
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHC-CC-ceEEeec
Confidence 24699999999999998 322 2 567999 9998776532 22334777788888888 86 3333333
Q ss_pred c--CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-C-eEEEEEeechhHHHHHH
Q psy9576 252 P--SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-K-YIGFAFGSGLERLTMLR 317 (338)
Q Consensus 252 p--s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~-~~~~afelglerlam~~ 317 (338)
+ .-++.......++..+.+| ..+++|.+-.+....-+.+|+. .. . .+...||++ ||+..+.
T Consensus 195 ~~~ek~~ga~~~~~ie~~~~dg----~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gig-eRli~al 264 (459)
T 1nj8_A 195 PEWDKFPGAEYTMAFDTIFPDG----RTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIASI 264 (459)
T ss_dssp CTTSCCTTCSEEEEEEEECTTS----CEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEEC-THHHHHH
T ss_pred CchhhcCCcccceeEEEEcCCC----cEEEEEEEeecccccccccCeEEECCCCCEeeeeEeeccHH-HHHHHHH
Confidence 3 2233222223445444111 1346665544444444455542 11 1 145777777 9987544
No 48
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.41 E-value=2.8e-06 Score=83.58 Aligned_cols=127 Identities=12% Similarity=0.157 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
...+.+.+.+++.|...||+|+.+|.+++. ..|.. .+- ... .+.|.+.+. +....+||+.++|..+|...
T Consensus 21 ~~~~~i~~~i~~~~~~~G~~ei~tP~le~~-el~~~~~G~---~~~---~em~~~~D~--~g~~l~LrPd~t~~~aR~~~ 91 (434)
T 1wu7_A 21 DVEKFIFKTAEEAAEAFGFRRIDFPSLEYL-DLYRIKSGE---ELL---QQTYSFVDK--GGREVTLIPEATPSTVRMVT 91 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECBCCSEEET-HHHHTTSCT---TGG---GGSCEEECT--TSCEEEECSCSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccccccH-HHhhhccCC---ccc---cceEEEECC--CCCEEEeCCCChHHHHHHHH
Confidence 346788999999999999999999999874 34443 221 111 244666554 34557999999999999886
Q ss_pred cCC---CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 INK---PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~~~---~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
++. .|+|+|.+|+|||.+ ....+..+|+|.++-+.|.+-.. .++..++..+++.+ |.
T Consensus 92 ~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~l-gl 154 (434)
T 1wu7_A 92 SRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRL-GL 154 (434)
T ss_dssp TCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT-TT
T ss_pred hcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHc-CC
Confidence 542 599999999999998 45567889999999999864322 34566777777777 86
No 49
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.41 E-value=1.4e-06 Score=85.26 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~ 185 (338)
...+.+.+.+++.|...||+|+.+|.+++.. .|..- +-..++... +.|.+.+. +.+..+||+-+++..+|...
T Consensus 19 ~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e-l~~~~~G~~~d~~~~---em~~~~D~--~g~~l~Lrpd~t~~~aR~~~ 92 (423)
T 1htt_A 19 AIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP-LFKRAIGEVTDVVEK---EMYTFEDR--NGDSLTLRPEGTAGCVRAGI 92 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCEECBCCSEEEHH-HHHHHHCSSSHHHHH---TCEEEECT--TSCEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEecccccCHHH-HHhhccCCchhhhhh---heEEEEcC--CCCEEEeCCCchHHHHHHHH
Confidence 3467889999999999999999999998753 34321 211011111 34666554 34557999999999999875
Q ss_pred c----CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 186 I----NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 186 ~----~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
+ ...|+|+|.+|+|||.+ ....+..+|+|.++-+.|.+... .++..++..+++.+ |.
T Consensus 93 ~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~l-gl 156 (423)
T 1htt_A 93 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL-GI 156 (423)
T ss_dssp HHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH-TC
T ss_pred hcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHC-CC
Confidence 3 24699999999999998 45667889999999888854322 35667777788887 74
No 50
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=98.33 E-value=2.6e-06 Score=87.19 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHh-hCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH--HHhc
Q psy9576 110 MRTLERIEKIFY-SIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR--YSKI 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~-~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~--~l~~ 186 (338)
.++...||++|. ..||.||.+|.++.. .|. .|+. |.+.... ......|++| |.+.. .|..
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~s--------t~~--GA~~----F~v~~~~-~g~~~~L~qS--pql~kq~l~v~ 214 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKR--------TPG--GAKE----FLVPSRE-PGKFYSLPQS--PQQFKQLLMVG 214 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCC--------CCS--SSCC----CEEECSS-TTCEEECCSS--TTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccC--------CCC--CCcC----ceecccc-CCcccccccC--HHHHHHHHHhc
Confidence 467889999997 799999999999642 111 1221 2221110 1122356654 65443 3444
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhcc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFE 242 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg 242 (338)
.-. |+|++|+|||.+ .+.+|.|||+|+++.++. +++.|+...++.+++.+|.
T Consensus 215 g~~--rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af--~d~~d~m~~~E~l~~~~~~ 267 (617)
T 4ah6_A 215 GLD--RYFQVARCYRDEGSRPDRQPEFTQIDIEMSF--VDQTGIQSLIEGLLQYSWP 267 (617)
T ss_dssp SCS--EEEEEEEEECCCSSCSSSCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHSC
T ss_pred ccC--cEEEEEhheecccCCCCcCcceecceeeecC--CCHHHHHHHHHHHHHHHHH
Confidence 333 999999999999 578899999999999987 5799999999999999875
No 51
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=98.31 E-value=1e-05 Score=80.06 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+|+.+|.++... .|..- ..+... ..|.+.+. +.+..+||+-+++..+|.+.++
T Consensus 31 ~~~i~~~~~~~~~~~Gy~eI~tP~le~~e-l~~~~---~g~~~~---~~y~f~D~--~g~~l~LRPd~T~~~aR~~~~~~ 101 (464)
T 4g84_A 31 REKVFDVIIRCFKRHGAEVIDTPVFELKE-TLMGK---YGEDSK---LIYDLKDQ--GGELLSLRYDLTVPFARYLAMNK 101 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHTTS---CC-------CCCBBCCC--SSCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHH-Hhccc---cCcCcc---eeEEEECC--CCCEEEeCCcCcHHHHHHHHhcC
Confidence 57888999999999999999999997643 33211 111111 23555554 3455799999999999987654
Q ss_pred CCCceEEEeeeEEEeCC---CCCCCcceeEEEEEEEcCCCC-H--HHHHHHHHHHHHHhccC
Q psy9576 188 KPPIKVITSGRVYRIDS---DSTHSPMFHQIEGLWIDKNIS-F--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~---d~th~~~f~ql~~l~~g~~~~-f--~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|.+|.|||.+. ...+..+|+|+.+=+.|..-+ . .++-.++..+++.+ |.
T Consensus 102 ~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l-gl 162 (464)
T 4g84_A 102 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL-QI 162 (464)
T ss_dssp CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHH-TC
T ss_pred CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHh-CC
Confidence 56999999999999873 234677999999988885322 2 34666777778887 75
No 52
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.27 E-value=8.9e-06 Score=81.89 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.++++|...||+|+.+|.++... .|..- ..+-.. ..|.+.+. +.+..+||+-+++..+|.+..+
T Consensus 84 ~~~ie~~i~~~~~~~Gy~eI~tP~lE~~e-l~~~~---~ge~~~---~my~f~D~--~g~~l~LRPd~T~~~aR~~~~~~ 154 (517)
T 4g85_A 84 REKVFDVIIRCFKRHGAEVIDTPVFELKE-TLMGK---YGEDSK---LIYDLKDQ--GGELLSLRYDLTVPFARYLAMNK 154 (517)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEHH-HHHCC------------CSCBBCCT--TSCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHH-Hhhcc---cCcCcc---eeEEEECC--CCCEEEeCCcCcHHHHHHHHhCC
Confidence 56889999999999999999999997643 33211 011111 22445444 3455799999999999987654
Q ss_pred CCCceEEEeeeEEEeCC-C--CCCCcceeEEEEEEEcCCCC-H--HHHHHHHHHHHHHhccC
Q psy9576 188 KPPIKVITSGRVYRIDS-D--STHSPMFHQIEGLWIDKNIS-F--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d~-d--~th~~~f~ql~~l~~g~~~~-f--~dLKg~l~~ll~~lfg~ 243 (338)
..|+|+|++|+|||.+. . .-+..+|+|+++=+.|..-+ . .++-.++..+++.+ |.
T Consensus 155 ~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l-gl 215 (517)
T 4g85_A 155 LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL-QI 215 (517)
T ss_dssp CSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHH-CC
T ss_pred CCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhh-cC
Confidence 56999999999999873 2 24678999999988885322 2 34666777788887 75
No 53
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.27 E-value=5.7e-05 Score=75.41 Aligned_cols=198 Identities=11% Similarity=0.077 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.|...||+++.+|.+++.. .|.+ ...|-..-..+.|.+...... .+..+||+...++..+...+
T Consensus 47 ~~~I~~~~r~~~~~~G~~ei~tP~l~~~e-l~~~---~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 47 WENIQQVLDRMFKETGHQNAYFPLFIPMS-FLRK---EAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEST-TC------------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHH-HHhh---cCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 56788999999999999999999998763 3332 122311111233555432000 23479999999988877643
Q ss_pred -----CCCCceEEEeeeEEEeC-CC--CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHH-HHhccCCCeeEEEcc
Q psy9576 187 -----NKPPIKVITSGRVYRID-SD--STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFI-RVFFESDNIQIRFRP 252 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d--~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll-~~lfg~~~~~~r~~p 252 (338)
...|+|++.+|+|||.+ .- -....+|+|.++-+.|.+ ..+..+..+...++ +.| |. ...+...+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~L-gl-~~~~~~~~ 200 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYA-AI-PVIEGLKT 200 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH-CC-CCEEEECC
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CC-eEEEEeCC
Confidence 25799999999999999 32 226789999999887642 12233444567788 666 86 33333333
Q ss_pred --CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-Ce-EEEEEeechhHHHHHH
Q psy9576 253 --SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-KY-IGFAFGSGLERLTMLR 317 (338)
Q Consensus 253 --s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~~-~~~afelglerlam~~ 317 (338)
..|........++....+|+ + +++|.+=.+.-+.-..+|+. .. ++ +...||++ +|+..+.
T Consensus 201 ~~e~~~g~~~~~~ie~~~~dgr---~-~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~Gig-eRli~~l 269 (477)
T 1hc7_A 201 EKEKFAGAVYTTTIEALMKDGK---A-LQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS-WRFIGAI 269 (477)
T ss_dssp TTTSCTTSSEEEEEEEECTTSC---E-EEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEE-THHHHHH
T ss_pred hHHhcCCcccceEEEEEcCCCc---E-EEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHH-HHHHHHH
Confidence 22222212234444431222 2 34544433434444556552 11 11 24678888 9987543
No 54
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=98.25 E-value=2.1e-05 Score=79.05 Aligned_cols=196 Identities=13% Similarity=0.200 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhh-cCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTA-LNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~-L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l~ 185 (338)
.+.+.+.+++.|.. ||+|+.+|.+++.. .|.+ - .|-..-..+.|.+..... ..+..+||+...+++.+...
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~-l~~~~s----G~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~ 147 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPED-ELAKEA----IHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 147 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHH-HHTTSH----HHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHH-HHhccc----CCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHH
Confidence 46778889999999 99999999998753 3322 1 010000112355542100 02236899999988888765
Q ss_pred c-----CCCCceEEEeeeEEEeCC-CC---CCCccee-EEEEEEEcCC-----CCHHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 186 I-----NKPPIKVITSGRVYRIDS-DS---THSPMFH-QIEGLWIDKN-----ISFSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 186 ~-----~~~pirifeiG~Vyr~d~-d~---th~~~f~-ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
. ...|+|++.+|+|||.+. +. ....+|+ |.++-+.+.+ ..+..+..+...+++.| |. ...+..
T Consensus 148 ~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~L-gl-~~~~~~ 225 (501)
T 1nj1_A 148 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL-GI-PYLITR 225 (501)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEE
T ss_pred hhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEe
Confidence 3 256999999999999983 22 1467999 9998665421 22444677788888888 86 344434
Q ss_pred ccCCCCCCCCc--eEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CC-Ce-EEEEEeechhHHHHHH
Q psy9576 251 RPSYFPFTEPS--AEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PE-KY-IGFAFGSGLERLTMLR 317 (338)
Q Consensus 251 ~ps~fpf~~Ps--~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~-~~-~~~afelglerlam~~ 317 (338)
.+....|.... ..+++.+.+ +.++++|.+-.+.....+.+|+. .. ++ ....||++ +|+....
T Consensus 226 ~~~~e~~~~a~~~~die~~l~~----g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gig-eRli~al 296 (501)
T 1nj1_A 226 RPPWDKFPGSEYTVAFDTLMPD----GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLS-DRVIASV 296 (501)
T ss_dssp CCTTTSCTTCSEEEEEEEECTT----SCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEC-THHHHHH
T ss_pred CCchhhcCCcccceEEEEEcCC----CCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHH-HHHHHHH
Confidence 33322222121 345554412 23678887765655555566652 01 12 24678888 9986544
No 55
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=98.18 E-value=5.7e-05 Score=74.92 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+.+++.+...||+|+.+|.+.+.. .+..-+ |-..-..+.|.+.+. ..+||+...+.+......
T Consensus 197 ~aL~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sG----~~~~f~~emy~~~d~-----~l~LrPt~e~~~~~~~~~~~~ 266 (455)
T 2dq0_A 197 LALIRFALDRLIEKGFTPVIPPYMVRRF-VEEGST----SFEDFEDVIYKVEDE-----DLYLIPTAEHPLAGMHANEIL 266 (455)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH-HHHTTS----CTTHHHHTCCBBTTS-----SCEECSSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCCcccCHH-HHHhcC----CCCCChHhhCeecCC-----cEEEcCcCcHHHHHHHHhCcc
Confidence 4556777888889999999999998763 444333 211111233555432 268999888887776543
Q ss_pred --CCCCceEEEeeeEEEeCCCC--------CCCcceeEEEEEEEcCCCC----HHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 187 --NKPPIKVITSGRVYRIDSDS--------THSPMFHQIEGLWIDKNIS----FSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~d~--------th~~~f~ql~~l~~g~~~~----f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
...|+|++++|+|||.+..+ ....+|+|.++......-+ +..+......+++.| |. ...+...+
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~L-GL-~yrv~~~~ 344 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQEL-EI-PYRVVNIC 344 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHc-CC-ceEEEECC
Confidence 35699999999999998421 1567999999988764422 457788888889887 86 33222222
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeee---eecCHHHhhh-CC-C-CCC---CeEEEEEeechhHHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGA---GQVNPKVLCN-MN-L-DPE---KYIGFAFGSGLERLTM 315 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~---G~vhP~Vl~~-~g-i-~~~---~~~~~afelglerlam 315 (338)
+-..+...+.+.|+.++... .++|.||+.| |-.-|.-+.- +. - +.. -+.+...+++++|+.-
T Consensus 345 ~gdlg~~a~~~~diE~w~p~-~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav~R~i~ 415 (455)
T 2dq0_A 345 TGDLGYVAAKKYDIEAWMPG-QGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIV 415 (455)
T ss_dssp GGGSCSSCSEEEEEEEEETT-TTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEHHHHHH
T ss_pred CccccChhhceeeeeeecCc-CCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEEEechHhHHHHHHH
Confidence 22222222344444332111 2468898865 4444544331 11 0 111 1233456788999653
No 56
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.11 E-value=4.3e-05 Score=77.74 Aligned_cols=128 Identities=11% Similarity=0.124 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
-.+.+.+.+++.|...||+|+.+|.+++.. .|..-+. .++-.. +.|.+.+. ..+..+||+...|+..+...+
T Consensus 49 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~sG~-~~~~~~---~m~~~~d~--~~~~~~LrP~~~~~~~~~~~~~ 121 (572)
T 2j3l_A 49 VLEKLKTIMREEFEKIDAVEMLMPALLPAE-LWKESGR-YETYGP---NLYRLKDR--NDRDYILGPTHEETFTELIRDE 121 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEETH-HHHHHSH-HHHSCT---TSCEEECT--TCCEEEECSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHH-HHHhcCC-ccccch---heEEEecC--CCCeEEEccccHHHHHHHHHhh
Confidence 367889999999999999999999998764 3432221 001111 23555443 234579999999988886643
Q ss_pred ----CCCCceEEEeeeEEEeCCC-CC---CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDSD-ST---HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~d-~t---h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+.. .. ...+|+|.++-+.+.+ ..+..+..+...+++.+ |.
T Consensus 122 ~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~l-gl 190 (572)
T 2j3l_A 122 INSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERC-GL 190 (572)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred ccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2469999999999999842 12 5689999999988763 12334455777888887 86
No 57
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.10 E-value=0.00017 Score=71.69 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHH-hhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 109 IMRTLERIEKIF-YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~-~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
.+.+.+.+++.+ ...||+|+.+|.+++.. .|..-+.- ++-.. +-|.+.......+..+||+...|+..+..+.
T Consensus 67 ~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~~sGh~-~~~~~---emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 67 FNKLIEFMKLQQKFKFGFNEVVTPLIYKKT-LWEKSGHW-ENYAD---DMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHTSCCEECCCCSEEEHH-HHHHHTCT-TTSGG---GSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCeeccHH-HHHhcCCc-ccccc---ceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 467888999999 99999999999997753 44432211 11112 3355543210134478999999988887754
Q ss_pred ----CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCCC-C---HHHHHHHHHHHH-HHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKNI-S---FSDLKGVYLNFI-RVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~~-~---f~dLKg~l~~ll-~~lfg~ 243 (338)
...|+|++++|+|||.+. .+ ....+|+|.++-+.+..- . +..+...+..++ +.| |.
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~l-Gl 211 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIF-PF 211 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTS-CC
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 246999999999999994 21 156799999998776432 1 223556666777 555 86
No 58
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=98.08 E-value=0.00017 Score=72.37 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc------CCCcceEeccchHHHHHHH
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV------SNNKPLLRTHTSPMQIRYS 184 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~------~~~~~~LRt~lsp~~l~~l 184 (338)
.+.+.+++.+...||+|+.+|.+.+...-...=..|.. ..+.|.+..... ..+..+||++.-+.+....
T Consensus 206 aL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f-----~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~ 280 (522)
T 3vbb_A 206 ALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQF-----DEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALH 280 (522)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-C-----CSCCCEEC------------CCEEECSSTHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccC-----cccceEeecCCccccccccCcceeEcccCcHHHHHHH
Confidence 45667777788899999999999776432222122221 124466643200 1223578876555444433
Q ss_pred hc-----CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcCCCC------HHHHHHHHHHHHHHhccCCC
Q psy9576 185 KI-----NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDKNIS------FSDLKGVYLNFIRVFFESDN 245 (338)
Q Consensus 185 ~~-----~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~~~~------f~dLKg~l~~ll~~lfg~~~ 245 (338)
.. ...|+|++++|.|||.+.. -....+|.|.++.+....-. +..+....+.+++.| |. .
T Consensus 281 ~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~L-GL-p 358 (522)
T 3vbb_A 281 RDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSL-GI-P 358 (522)
T ss_dssp TTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHT-TC-C
T ss_pred hhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHc-CC-c
Confidence 22 3569999999999999842 14567899999887644322 566777788888887 85 3
Q ss_pred eeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---------CCCe--EEEEEeechhHHH
Q psy9576 246 IQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---------PEKY--IGFAFGSGLERLT 314 (338)
Q Consensus 246 ~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---------~~~~--~~~afelglerla 314 (338)
..+...++-..+...+.+.||.++-.. ..+|.||..|--..---.+.++|. ..+| .+-+.++.++|+.
T Consensus 359 yrvv~l~tgdlg~~asktyDiE~w~P~-~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l 437 (522)
T 3vbb_A 359 YHIVNIVSGSLNHAASKKLDLEAWFPG-SGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTI 437 (522)
T ss_dssp EEEEECCGGGCCTTCSEEEEEEEEETT-TTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHH
T ss_pred eEEEEcCCccCCCchhheeceeEecCC-CCceeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHH
Confidence 222223333222223345555433111 346999987754422223333321 0122 3345678899954
No 59
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=98.02 E-value=0.00021 Score=72.27 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCC-CCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNS-PKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~-p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
..+.+-+++.+...||+|+.+|.+.+... +..-+. |.. ..+.|.+.+. ..+|+++.-+.+......
T Consensus 279 ~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l-~~~sG~~~~f-----~e~mf~~~~~-----~~~L~PT~E~~~~~l~~~~i 347 (536)
T 3err_A 279 LALLRFAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAY-----RDQVWAIAET-----DLYLTGTAEVVLNALHSGEI 347 (536)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHH-HHHHTCTTTT-----GGGCCEETTT-----TEEECSSTHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHcCCEEEeccccccHHH-HHhcCCcccC-----hhhceEecCC-----CEEEccCCcHHHHHHHhccc
Confidence 45566777788889999999999977643 333322 221 1245676542 268888776665554432
Q ss_pred ---CCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcCCC------CHHHHHHHHHHHHHHhccCCCeeEE
Q psy9576 187 ---NKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDKNI------SFSDLKGVYLNFIRVFFESDNIQIR 249 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~~~------~f~dLKg~l~~ll~~lfg~~~~~~r 249 (338)
...|+|++++|.|||++.. -....+|+|.+.......- .+..+....+.+++.| |. ...+.
T Consensus 348 ~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~L-gL-pyrvv 425 (536)
T 3err_A 348 LPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL-EL-PYRLV 425 (536)
T ss_dssp EEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEE
T ss_pred ccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHc-CC-cEEEE
Confidence 3579999999999998841 2456789999988775332 3566777788888887 85 33322
Q ss_pred EccCCCCCCCCceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCCC---CC---Ce--EEEEEeechhHHH
Q psy9576 250 FRPSYFPFTEPSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNLD---PE---KY--IGFAFGSGLERLT 314 (338)
Q Consensus 250 ~~ps~fpf~~Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi~---~~---~~--~~~afelglerla 314 (338)
..++-..+...+.+.||.++ -+ ..+|.||+.|---.---.+.++|. .+ +| .+-.-+++++|+.
T Consensus 426 ~~~tgdlg~~a~~~yDiE~w~p~--~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~R~l 497 (536)
T 3err_A 426 EVATGDMGPGKWRQVDIEVYLPS--EGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRIL 497 (536)
T ss_dssp ECCTTTSCTTCSEEEEEEEEEGG--GTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHH
T ss_pred EcCCcccCCChhheeeeeEecCC--CCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHHHHH
Confidence 23443333333455555433 12 246889988854422333334431 00 12 2334567889964
No 60
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.99 E-value=5.1e-05 Score=75.56 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.-.+.+.+.+++.|...||+|+.+|.+++. ..|.+=+ |-..-..+.|.++. +.+..+||+.+.++..+....
T Consensus 50 ~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~-~l~~~sg----~~~~~~~emy~~d~---~~~~l~LRP~~t~~i~~~~~~ 121 (471)
T 3a32_A 50 PIRYALAEVLAKFHARRGYYVVETPIIAST-ELFKVSG----HIEFYRNNMYLFDI---EGHEFAVKPMNCPYHILLFLN 121 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEET-HHHHHTC----CCTTGGGGSEEEEE---TTEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeeeeh-HHhhhcc----CccccccceEEEec---CCcEEEEccccHHHHHHHHHh
Confidence 346788999999999999999999999875 3454422 21111123466632 234479999999998887643
Q ss_pred -----C---CCCceEEEeeeEEEeCC-C--CC--CCcceeEEEEEEEcCCCCH----HHHHHHHHHHHHH-hccC
Q psy9576 187 -----N---KPPIKVITSGRVYRIDS-D--ST--HSPMFHQIEGLWIDKNISF----SDLKGVYLNFIRV-FFES 243 (338)
Q Consensus 187 -----~---~~pirifeiG~Vyr~d~-d--~t--h~~~f~ql~~l~~g~~~~f----~dLKg~l~~ll~~-lfg~ 243 (338)
. ..|+|++.+|+|||.+. . .- ...+|+|.++-+.|..-.. .++..+...+++. + |.
T Consensus 122 ~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~l-Gl 195 (471)
T 3a32_A 122 EVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLF-KL 195 (471)
T ss_dssp HHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTS-CC
T ss_pred hhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhh-CC
Confidence 2 57999999999999984 2 22 5789999998887754333 4477788888888 6 85
No 61
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.98 E-value=0.00024 Score=70.84 Aligned_cols=166 Identities=10% Similarity=0.066 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+.+-+++.+...||+|+.+|.+.+... +..-+ |...-..+.|.+.+. ..+ .+|+++--+.+......
T Consensus 212 ~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l-~~~sG----~~~~f~e~mf~v~~~--~~~-~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 212 VALVSYSLDFLVKRGYTPFYPPFFLNRDV-MGEVA----QLSQFDEELYQVSGD--GDK-KYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCSEEEHHH-HHHHS----CHHHHHHTCCEEESS--SSC-EEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHcCCEEEecCccccHHH-HHhcC----CcccccccceEeecC--Ccc-eEEeccCcHHHHHHHhcccc
Confidence 45566777778889999999999977533 22222 110001134666542 122 46776644444433322
Q ss_pred --CCCCceEEEeeeEEEeCC-C-------CCCCcceeEEEEEEEcCCCC------HHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D-------STHSPMFHQIEGLWIDKNIS------FSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d-------~th~~~f~ql~~l~~g~~~~------f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
...|+|++++|.|||.+. . -...++|+|.+..+....-. +..+....+.+++.| |. ...+..
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~L-GL-pyrvv~ 361 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSL-GL-PYRVVN 361 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHH-TC-CEEEEE
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEE
Confidence 356999999999999884 2 13556899999887654332 566777788888888 85 332222
Q ss_pred ccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeec
Q psy9576 251 RPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQV 286 (338)
Q Consensus 251 ~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~v 286 (338)
.++-..+...+.+.||.++-.. ..+|.||..|---
T Consensus 362 l~tgdlg~~a~~~yDiE~w~P~-~~~~~EIsS~Snc 396 (484)
T 3lss_A 362 ICSGALNNAAAKKYDLEAWFPA-SGAFRELVSCSNC 396 (484)
T ss_dssp CCTTTCCSSCSEEEEEEEEETT-TTEEEEEEEEEEC
T ss_pred cCCcccCCchhheechheecCC-CCCeeEEEEecCc
Confidence 3333222223355555433111 3468899988544
No 62
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.97 E-value=2.7e-05 Score=80.50 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCC-CcceEeccchHHHHHHHhc
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSN-NKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~-~~~~LRt~lsp~~l~~l~~ 186 (338)
-.+.+.+.+|+.+...||+|+.+|.+++.. .|..=+- .++....| |.+.+. .. +..+||+...|+..+....
T Consensus 273 ~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~-l~~~sG~-~d~~~~~m---f~~~d~--~~~~~~~LrP~~~~~~~~~~~~ 345 (645)
T 1nyr_A 273 IRREIERYIVDKEVSMGYDHVYTPVLANVD-LYKTSGH-WDHYQEDM---FPPMQL--DETESMVLRPMNCPHHMMIYAN 345 (645)
T ss_dssp HHHHHHHHHHHHHHHTTEEECBCCSEEETH-HHHHHTH-HHHCTTSS---CCCEEE--TTTEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHH-HHhhCCC-ccccccCc---ceeEec--CCCeEEEeCCCCCHHHHHHHHh
Confidence 467888999999999999999999998753 3433210 00111222 433221 12 3368999999999998754
Q ss_pred C-----CCCceEEEeeeEEEeCC-CCC----CCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 N-----KPPIKVITSGRVYRIDS-DST----HSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ~-----~~pirifeiG~Vyr~d~-d~t----h~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
+ ..|+|++++|+|||.+. .++ ...+|+|.++-+.+..- .+.++..++..+++.+ |.
T Consensus 346 ~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~l-Gl 415 (645)
T 1nyr_A 346 KPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDF-GF 415 (645)
T ss_dssp SCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT-TC
T ss_pred hhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2 46999999999999984 332 56899999998887543 2456777888888887 86
No 63
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.92 E-value=0.00012 Score=75.75 Aligned_cols=126 Identities=10% Similarity=0.096 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+.+|+.+...||+|+.+|.+++.. .|.+-+-- ++-.. +-|. ... ..+..+||+...|+..+...+
T Consensus 274 ~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~-l~~~sGh~-~~~~~---~my~-~d~--~~~~~~LrP~~~~~~~~~~~~~~ 345 (642)
T 1qf6_A 274 FRELEVFVRSKLKEYQYQEVKGPFMMDRV-LWEKTGHW-DNYKD---AMFT-TSS--ENREYCIKPMNCPGHVQIFNQGL 345 (642)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETH-HHHHHSHH-HHHGG---GCEE-EEE--TTEEEEECSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcCccHH-HHhhcCcc-ccccc---ccee-eec--CCceEEecCCCCHHHHHHHHhhh
Confidence 46788899999999999999999998763 34331100 00011 1233 211 123368999999999888754
Q ss_pred ---CCCCceEEEeeeEEEeCCC-C----CCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRIDSD-S----THSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~d-~----th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+.. + ....+|+|.++-+.+..- .+..+...+..+++.+ |.
T Consensus 346 ~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~l-Gl 413 (642)
T 1qf6_A 346 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTF-GF 413 (642)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGG-TC
T ss_pred hhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 2469999999999999832 2 257899999998876422 2334566677777776 85
No 64
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.88 E-value=0.00016 Score=72.68 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc--CCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV--SNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~--~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.+...||+|+.+|.+.+.. .|.+ ...|-..-..+.|.+..... .++..+||+...++..+..++
T Consensus 58 ~~~L~~~~~~~~~~~Gy~eV~tP~l~~~e-l~~k---~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 133 (518)
T 3ial_A 58 ENAIMRLCEEEYAKVGISQILFPTVIPES-FLKK---ESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133 (518)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHTS---SHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccCHH-HHHh---hcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHh
Confidence 46788889999999999999999997653 2211 00111000012355543200 023469999988888877643
Q ss_pred -----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHH-HHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFI-RVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll-~~lfg~~~~~~r~~ 251 (338)
...|+|++++|+|||.+. . -....+|+|.++-..|.+ ..+..+......++ +.| |. ...+.-+
T Consensus 134 ~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~L-Gl-p~~~~~~ 211 (518)
T 3ial_A 134 WVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDEL-CF-KGQKLRR 211 (518)
T ss_dssp HCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTT-CC-CCEEEEE
T ss_pred hhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhc-CC-cEEeeec
Confidence 357999999999999983 2 225679999999988632 12233444456666 555 86 3333334
Q ss_pred cC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---CC---CeEE-EEEeechhHHHH
Q psy9576 252 PS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---PE---KYIG-FAFGSGLERLTM 315 (338)
Q Consensus 252 ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~~---~~~~-~afelglerlam 315 (338)
|+ -++...-+..+++.+.+ +.++++|.+=-+.-+--+.+++. ++ +++- ..+|++ +|+..
T Consensus 212 ~~~e~~~gA~yt~~iE~~~pd----gr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~~-~R~ia 279 (518)
T 3ial_A 212 VCWDRFPGADYSEVSDVVMPC----GRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGIS-TRVLA 279 (518)
T ss_dssp CGGGCCTTCSEEEEEEEECTT----SCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEEE-THHHH
T ss_pred ChhhccCCCccceEEEEEcCC----CCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccchH-HHHHH
Confidence 54 23222222344555522 23567776544443444566652 10 1221 366776 88643
No 65
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.88 E-value=2.9e-05 Score=77.01 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEecc---chHHHH
Q psy9576 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTH---TSPMQI 181 (338)
Q Consensus 105 ~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~---lsp~~l 181 (338)
.....+.+.+.+|+.|...||+|+.+|.+++. ..|..-+- .++-.. +.|.+.+. .....+||++ .++.+.
T Consensus 66 g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~-el~~~sg~-~d~~~~---em~~~~d~--~~~~~~LrPt~ee~t~~i~ 138 (458)
T 2i4l_A 66 GHRVLKKIEQIVREEQNRAGAIELLMPTLQLA-DLWRESGR-YDAYGP---EMLRIADR--HKRELLYGPTNEEMITEIF 138 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH-HHHHHHTH-HHHSCT---TSEEEECT--TCCEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH-HHHHhcCC-cccccc---ceEEEEeC--CCCeEEECCCChHHHHHHH
Confidence 34456789999999999999999999999875 34443221 001112 33666544 2344799994 555566
Q ss_pred HHHhc--CCCCceEEEeeeEEEeC-CCC-C--CCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 182 RYSKI--NKPPIKVITSGRVYRID-SDS-T--HSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 182 ~~l~~--~~~pirifeiG~Vyr~d-~d~-t--h~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
+.... +..|+|+|.+|+|||.+ ... - ...+|+|.++-+.|.+ ..+..+..+...+++.+ |.
T Consensus 139 r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~l-Gl 210 (458)
T 2i4l_A 139 RAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM-GL 210 (458)
T ss_dssp HHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 65432 35799999999999998 421 2 5689999999998842 23334556677788887 85
No 66
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.83 E-value=0.00077 Score=67.86 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccC--CCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS--NNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~--~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+.+.+.+++.+...||+++.+|.+.+.. .|.+ ...|-..-..+-|++...... ++..+||+...|+..+..+.
T Consensus 64 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~-l~~k---~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~ 139 (519)
T 4hvc_A 64 WEAIKDFFDAEIKKLGVENCYFPMFVSQS-ALEK---EKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAK 139 (519)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHTT---SCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHH-HHhc---ccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHh
Confidence 56788889999999999999999997653 3332 113322111233555422100 12469999988888876643
Q ss_pred -----CCCCceEEEeeeEEEeC-CCC---CCCcceeEEEEEEEcCC-----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 -----NKPPIKVITSGRVYRID-SDS---THSPMFHQIEGLWIDKN-----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d-~d~---th~~~f~ql~~l~~g~~-----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|+|||.+ ... ....+|+|.++-+.+.. .-+..+......+++.++|.
T Consensus 140 ~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~l 210 (519)
T 4hvc_A 140 WVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAI 210 (519)
T ss_dssp HCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 24699999999999999 432 24578999998875421 12334445566666665354
No 67
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.79 E-value=4.9e-05 Score=73.98 Aligned_cols=126 Identities=10% Similarity=0.103 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
.+.+.+.+++.|...||+|+.+|.+++.. .|.+-+ |-..-..+.|.++. +.+..+||+...++..+...+.
T Consensus 33 ~~~i~~~~~~~~~~~G~~ei~tP~l~~~~-l~~~sG----~~~~~~~em~~~d~---~~~~~~LrP~~~~~~~~~~~~~~ 104 (401)
T 1evl_A 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV-LWEKTG----HWDNYKDAMFTTSS---ENREYCIKPMNCPGHVQIFNQGL 104 (401)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHH-HHHHHT----HHHHSGGGCCEEEE---TTEEEEECSCSHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeeccHH-HHHhcC----cHhhhchhhEeEec---CCceEEEcCCCCHHHHHHHHhhh
Confidence 56788899999999999999999998753 344321 10000012233221 1234699999999998887542
Q ss_pred ----CCCceEEEeeeEEEeCCC-CC----CCcceeEEEEEEEcCCCC----HHHHHHHHHHHHHHhccC
Q psy9576 188 ----KPPIKVITSGRVYRIDSD-ST----HSPMFHQIEGLWIDKNIS----FSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 188 ----~~pirifeiG~Vyr~d~d-~t----h~~~f~ql~~l~~g~~~~----f~dLKg~l~~ll~~lfg~ 243 (338)
..|+|++++|+|||.+.. ++ ...+|+|.++-+.+.... +.++..+...+++.+ |.
T Consensus 105 ~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~l-gl 172 (401)
T 1evl_A 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTF-GF 172 (401)
T ss_dssp CBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-TC
T ss_pred hhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 469999999999999842 22 578999999988764322 335777788888887 86
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.71 E-value=0.00025 Score=70.63 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHH----h-
Q psy9576 111 RTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYS----K- 185 (338)
Q Consensus 111 ~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l----~- 185 (338)
.+.+.+++.+...||+|+.+|.+.+... +..-+ |...-..+.|.+.+. ..++.+..|+-.|...-.. +
T Consensus 190 aL~~~~~d~~~~~Gy~eV~~P~lv~~~l-~~~sG----~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 190 ALINYGLSFLSSKGYVPLQAPVMMNKEV-MAKTA----QLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHTTTCEEEECCSEEEHHH-HHHHS----CHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcC----CccccccceEEEeCC--CCeEEEeccccHHHHHHHhcccccc
Confidence 3566777778889999999999977643 22222 110001144666532 1234555667666432111 1
Q ss_pred -cCCCCceEEEeeeEEEeCCC--------CCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 186 -INKPPIKVITSGRVYRIDSD--------STHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 186 -~~~~pirifeiG~Vyr~d~d--------~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
....|+|++++|.|||.+.. -....+|.+.++...... -.+..+....+.+++.| |. ...+-..+
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~L-gL-pyrvv~~~ 340 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSL-GL-PYRVVGIV 340 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT-TC-CEEEEECC
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHC-CC-cEEEEEcC
Confidence 12359999999999999842 135668999998877432 23566777788888887 85 32222233
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC---C------CCe--EEEEEeechhHHH
Q psy9576 253 SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD---P------EKY--IGFAFGSGLERLT 314 (338)
Q Consensus 253 s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~---~------~~~--~~~afelglerla 314 (338)
+-..+...+.+.||.++-.. ..+|.||+.|--..---.+.++|. . .+| .+-+.++.+.|+.
T Consensus 341 tgdlg~~a~~tyDiE~w~P~-~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt~lav~R~l 412 (485)
T 3qne_A 341 SGELNNAAAKKYDLEAWFPF-QQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTI 412 (485)
T ss_dssp GGGCCTTCSEEEEEEEEETT-TTEEEEEEEEEECTTHHHHHTTCEECC------CCCBCEEEEEEEEEHHHHH
T ss_pred CcccCCchhhheeeeEeccC-CCceeEEEEecCCcCccccccceEEecccccCCCceeeEEEecchhHHHHHH
Confidence 33223333455555433111 346889988865533334444441 0 112 3344678899954
No 69
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.69 E-value=0.0035 Score=62.90 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=59.1
Q ss_pred cceEeccchHHH----HHHHhc--CCCCceEEEeeeEEEeC-C-C--CCCCcceeEEEEEEEcCC--CC--HHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQ----IRYSKI--NKPPIKVITSGRVYRID-S-D--STHSPMFHQIEGLWIDKN--IS--FSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~----l~~l~~--~~~pirifeiG~Vyr~d-~-d--~th~~~f~ql~~l~~g~~--~~--f~dLKg~l~ 234 (338)
..+||+-+.++. .+.+.. +..|++++++|+|||.+ . - -....+|+|.++-+.+.. .. +..+.....
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred ceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHH
Confidence 358999998888 455543 46799999999999999 3 1 236789999998865432 22 667888888
Q ss_pred HHHHHhccCCCeeEEEc
Q psy9576 235 NFIRVFFESDNIQIRFR 251 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~ 251 (338)
.+++.+ |.+...++++
T Consensus 262 ~i~~~L-Gl~~~~v~~~ 277 (505)
T 1ati_A 262 KWWQEM-GLSRENLVPY 277 (505)
T ss_dssp HHHHHT-TCCGGGEEEE
T ss_pred HHHHHc-CCCeEEEEEC
Confidence 888887 8732334444
No 70
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.61 E-value=0.00041 Score=64.20 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=75.3
Q ss_pred HHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh-cC-C-CCce
Q psy9576 116 IEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK-IN-K-PPIK 192 (338)
Q Consensus 116 Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~-~~-~-~pir 192 (338)
++++|...||+++.+|.++... .|.. |.| .+. +.+...||+-++|+.+ .-. +. . .|+|
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~-l~~~-------------d~f-~d~---~g~~l~LRpd~T~~~a-~~~~~~~~~~p~R 72 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAE-EPAG-------------NFF-LDR---KGNLFSIREDFTKTVL-NHRKRYSPDSQIK 72 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECS-SCCS-------------SCE-EET---TSCEEEECCCHHHHHH-HHHTTCTTCCCEE
T ss_pred HHHHHHHCCCEEecCccccchh-hhcc-------------ccc-CCC---CCCEEEeCCcChHHHH-HHHhhcCCCCceE
Confidence 4499999999999999997642 2321 123 232 2345799999998888 222 12 4 6999
Q ss_pred EEEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 193 VITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 193 ifeiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
++++|+|||.+.... .+|+|..+=+.|..--. .++-.++..+++.+ |.
T Consensus 73 ~~y~g~vfR~e~~~~--Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~l-gl 122 (275)
T 1usy_A 73 VWYADFVYRYSGSDL--VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF-FE 122 (275)
T ss_dssp EECCEEEEEEETTEE--EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH-CC
T ss_pred EEEeceEEecCCCCC--CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHc-CC
Confidence 999999999984212 89999999888865322 45666777777877 85
No 71
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.45 E-value=0.0016 Score=65.45 Aligned_cols=204 Identities=19% Similarity=0.231 Sum_probs=114.3
Q ss_pred HHHHHHHHHH-HHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc-----------------------
Q psy9576 109 IMRTLERIEK-IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY----------------------- 164 (338)
Q Consensus 109 ~~~~~~~Ir~-~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~----------------------- 164 (338)
.+.+.+.+++ ++...||+|+.+|.+.+.. .+.+-+ |-..-..+.|.+....
T Consensus 234 ~~~L~~~~~~e~~~~~G~~EV~tP~L~~~e-l~~~SG----h~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 234 FRTFEKIVLEELLEPLGYREMIFPKLVTWE-VWMKSG----HAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHTHHHHTCEECBCCSEEEHH-HHHHHT----GGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCCcccHH-HHhhcC----CcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 3456666675 4677899999999997753 444322 2111112334442100
Q ss_pred -----cCCCcceEeccchHHHHHHHhc-----CCCCceEEE-eeeEEEeCCC----CCCCcceeEEEEEEEcCCC----C
Q psy9576 165 -----VSNNKPLLRTHTSPMQIRYSKI-----NKPPIKVIT-SGRVYRIDSD----STHSPMFHQIEGLWIDKNI----S 225 (338)
Q Consensus 165 -----~~~~~~~LRt~lsp~~l~~l~~-----~~~pirife-iG~Vyr~d~d----~th~~~f~ql~~l~~g~~~----~ 225 (338)
...+..+||+.+-+++...... ...|++++. +|+|||++.. -....+|+|.++.+.+..- .
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~F~~pe~s~ee 388 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKC 388 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEEHHHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEEEeChHHHHHH
Confidence 0123469999877776665542 246999999 9999999942 2567899999998876321 2
Q ss_pred HHHHH-HHHHHHHHHhccCCCeeEEEccCCCCCCC------------CceEEEEEee-cC--CCCCCCeeEeeeeecCHH
Q psy9576 226 FSDLK-GVYLNFIRVFFESDNIQIRFRPSYFPFTE------------PSAEIDIVFQ-DG--PLKGNWLEISGAGQVNPK 289 (338)
Q Consensus 226 f~dLK-g~l~~ll~~lfg~~~~~~r~~ps~fpf~~------------Ps~e~~i~~~-~g--~~~~gwieig~~G~vhP~ 289 (338)
+..+. .....+++.| |+ . .++. ...+|.. .....|+.++ .. . .+.|++++-|.----.
T Consensus 389 ~ee~i~~~~~~~l~~L-GL-p-~v~~--~~D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g-~~~~~eisS~s~~~d~ 462 (522)
T 2cja_A 389 AEELHDRYMHIFNDIL-DI-E-WRKA--RVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGP-DGEWLEFQNVSINGDK 462 (522)
T ss_dssp HHHHHHHHHHHHHHTS-CC-C-EEEE--EC----------------CCCEEEEEEECCGGGCT-TCCCEEEEEEEECTTH
T ss_pred HHHHHHHHHHHHHHHc-CC-C-EEee--ccCCccccccccccchhccccceEEEEEecccccC-CCcEEEEeeechhhhh
Confidence 23334 5556666776 86 3 3332 3334331 1233454332 21 1 2346788777543333
Q ss_pred HhhhCCCC---CCCeEEEEEeechhHHHH---HHcCCCcc
Q psy9576 290 VLCNMNLD---PEKYIGFAFGSGLERLTM---LRYGIDDL 323 (338)
Q Consensus 290 Vl~~~gi~---~~~~~~~afelglerlam---~~~~i~di 323 (338)
--+.++|. .+..-+.+.|++++|++. ..||-+|.
T Consensus 463 qarr~~Ir~~~~~~vht~~~Glgv~Rli~AlLE~~~~~~~ 502 (522)
T 2cja_A 463 YPKGFNVKLQSGDELWSGCSGVGLERWAAVFLAQKGLDPA 502 (522)
T ss_dssp HHHHHTCEETTCCCEEEEEEEEEHHHHHHHHHHHHCSCGG
T ss_pred cccccceEcCCCCEEEEeccCcHHHHHHHHHHHHcCCCCC
Confidence 33444542 111223578999999753 34666664
No 72
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.33 E-value=0.005 Score=58.57 Aligned_cols=146 Identities=13% Similarity=0.063 Sum_probs=90.0
Q ss_pred ceEeccchHHHHHHHhcC----CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKIN----KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRV 239 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~~----~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~ 239 (338)
.+|.+..=|.+....+.. ..|+|+.+.|.|||++ + +.....+|+|.+.++.+.. --+..+....+.+++.
T Consensus 144 ~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~ 223 (346)
T 3mf2_A 144 LVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARD 223 (346)
T ss_dssp EEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHH
Confidence 456655444455544421 3489999999999999 4 5678889999999998742 2345567777888888
Q ss_pred hccCCCeeEEEccCCCCCCCC------------ceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCC---CC-eEE
Q psy9576 240 FFESDNIQIRFRPSYFPFTEP------------SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDP---EK-YIG 303 (338)
Q Consensus 240 lfg~~~~~~r~~ps~fpf~~P------------s~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~---~~-~~~ 303 (338)
| |. .++.....-||... ....|+.++-.. ...|.||+-|--..---.+.++|.- +- ++.
T Consensus 224 L-gL---pyrv~~~~D~~f~~~G~l~~~~Q~~~~~kyDlevw~p~-~~~y~EisS~Sn~~dfqarR~~Ir~~~~~~vHT~ 298 (346)
T 3mf2_A 224 L-GL---TFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRS-EEQPTACMSFNYHREHFGTTWGIQDANGEPAHTG 298 (346)
T ss_dssp T-TC---CCEEEECCCCCCHHHHHHHHHHHHHTTCEEEEEECSSC-SSSCEEEEEEEECTTHHHHHHTCBCTTSSBCEEE
T ss_pred C-CC---CEEEEEccCCCcCcccchhhhccccccceEEEEEEcCC-CCCeeEEEeeecccchhhhhhcceeCCCCeEEEc
Confidence 7 85 34444344454321 124555543111 2358899888765544455566631 11 233
Q ss_pred EEEeechhHHH--H-HHcCCC
Q psy9576 304 FAFGSGLERLT--M-LRYGID 321 (338)
Q Consensus 304 ~afelglerla--m-~~~~i~ 321 (338)
+.+++++|++ . --||-+
T Consensus 299 -~sglav~R~l~AiLen~G~d 318 (346)
T 3mf2_A 299 -CVAFGMDRLAVAMFHTHGTD 318 (346)
T ss_dssp -EEEEEHHHHHHHHHHHHCSC
T ss_pred -ccchHHHHHHHHHHHHcCCC
Confidence 7788999954 3 345655
No 73
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=97.25 E-value=0.012 Score=61.32 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCcceEeccchHHH----HHHHhc--CCCCceEEEeeeEEEeC-C---CCCCCcceeEEEEEEE
Q psy9576 167 NNKPLLRTHTSPMQ----IRYSKI--NKPPIKVITSGRVYRID-S---DSTHSPMFHQIEGLWI 220 (338)
Q Consensus 167 ~~~~~LRt~lsp~~----l~~l~~--~~~pirifeiG~Vyr~d-~---d~th~~~f~ql~~l~~ 220 (338)
....+||+-|..+. .+.+.. ...|++++++|++||++ . .-....+|+|.++-+.
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F 300 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEE
T ss_pred CcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEE
Confidence 45579999999998 566643 36799999999999999 4 1236689999999544
No 74
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=94.26 E-value=0.3 Score=48.16 Aligned_cols=108 Identities=9% Similarity=-0.067 Sum_probs=66.3
Q ss_pred ceEeccchHHHHHHHhc------CCCCceEEEeeeEEEeCC---CC----CCCcceeEEEEE-EEcCCCC---HHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKI------NKPPIKVITSGRVYRIDS---DS----THSPMFHQIEGL-WIDKNIS---FSDLKGV 232 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~------~~~pirifeiG~Vyr~d~---d~----th~~~f~ql~~l-~~g~~~~---f~dLKg~ 232 (338)
.+||+.|.|+.+-...+ ...|+++.++|+|||++. .+ ....+|.|+++. ++..+-+ +..+...
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~ 226 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRH 226 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHH
Confidence 48999999998876533 257999999999999983 22 345789999984 4554322 4445556
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeee
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGA 283 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~ 283 (338)
...+++.| |.+...++++.. +..+.....||.+. - ..||.|+-+|
T Consensus 227 ~~~~~~~L-Gi~~~~~r~~~~--~~eeA~~~~DiE~~--~-p~G~~E~~g~ 271 (459)
T 3ikl_A 227 RLQWWRKF-AMSPSNFSSSDC--QDEEGRKGNKLYYN--F-PWGKELIETL 271 (459)
T ss_dssp HHHHHHHH-CSSGGGEEEEEE--CCSSSSCEEEEEEE--C-SSCEEEEEEE
T ss_pred HHHHHHHh-CCChhhEEEeec--CchHHHhhcCeEEE--c-CCceEEEeee
Confidence 66677777 862223554432 22223344555441 1 3478888665
No 75
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=93.43 E-value=0.073 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.4
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|--.+++|+|||+|+..|.+.||+.
T Consensus 538 phgG~a~G~dRlvml~~g~~~irdv 562 (617)
T 4ah6_A 538 PHGGIALGLDRLICLVTGSPSIRDV 562 (617)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGS
T ss_pred CCCceeecHHHHHHHHcCCCchheE
Confidence 3456778899999999999999985
No 76
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=90.08 E-value=0.18 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=23.2
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.||||+|||+|+..|.++||+.
T Consensus 495 P~gG~GlGiDRLvMlltg~~~IRdV 519 (529)
T 4ex5_A 495 PTGGCGIGIDRLVMLLTDSPTIRDV 519 (529)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CCcEEEEeHHHHHHHHcCCCcHHHe
Confidence 5788999999999999999999985
No 77
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=86.12 E-value=0.43 Score=48.50 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=22.7
Q ss_pred EEEEEeechhHHHHHHcCCCccccc
Q psy9576 302 IGFAFGSGLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 302 ~~~afelglerlam~~~~i~diR~~ 326 (338)
|.-.+|||+|||+|+..|.++||+.
T Consensus 527 PhgG~glGlDRLvmlltg~~sIRdV 551 (585)
T 1c0a_A 527 PHAGLAFGLDRLTMLLTGTDNIRDV 551 (585)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred CceeEEEcHHHHHHHHcCCCcHHhe
Confidence 5678899999999999999999974
No 78
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=77.38 E-value=2.9 Score=41.04 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=47.0
Q ss_pred ceEeccchHHHHHHHhc------CCCCceEEEeeeEEEe---CCC----CCCCcceeEEEEE-EEcCC---CCHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYSKI------NKPPIKVITSGRVYRI---DSD----STHSPMFHQIEGL-WIDKN---ISFSDLKGV 232 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l~~------~~~pirifeiG~Vyr~---d~d----~th~~~f~ql~~l-~~g~~---~~f~dLKg~ 232 (338)
.+||+-|.|+......+ ...|+++.++|+|||+ +.. -....+|.|.++- .+..+ -.+......
T Consensus 137 ~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 137 GKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRH 216 (454)
T ss_dssp CEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred eeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHHHHHHH
Confidence 68999988888765432 3679999999999995 532 2445688999984 44432 123334445
Q ss_pred HHHHHHHhccC
Q psy9576 233 YLNFIRVFFES 243 (338)
Q Consensus 233 l~~ll~~lfg~ 243 (338)
...++..| |.
T Consensus 217 ~~~~~~~l-gi 226 (454)
T 1g5h_A 217 RLLWWRKF-AM 226 (454)
T ss_dssp HHHHHHTT-CS
T ss_pred HHHHHHHc-CC
Confidence 55566665 86
No 79
>3n6o_A Guanine nucleotide exchange factor; phosphatidylinositol-4-phosphate, membrane, RAB, LCV, P rabgef, signaling protein; 2.50A {Legionella pneumophila} PDB: 3l0m_A
Probab=57.92 E-value=18 Score=31.88 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhcCCc---------chHHHHHHHhcCCChhHhhhhchhhHHHHHH
Q psy9576 5 KKLLIQAKIDFSTAVSISSLENAKSYYLGKN---------GKLTQYIKNIKNISINERKRYGEIINSIKIN 66 (338)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkk---------g~l~~l~~~l~~l~~eer~~~G~~~n~~k~~ 66 (338)
..|...++..|+.+.++++|+++..+|..+. |.+|..+ .++-.-.+++-+.+++.++.
T Consensus 233 tkIL~dFKdsL~eittlqeLkd~V~EFkqs~EY~ILakGQGLiTk~f----gLkTSSvRAvekMVeE~rq~ 299 (311)
T 3n6o_A 233 TEILADFKDKLAEATDEQSLKQIVAELKSKDEYRILAKGQGLTTQLL----GLKTSSVSSFEKMVEETRES 299 (311)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHSCSSHHHHHH----TCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcChHHhHHHhccchhhHhc----CCCchHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999996543 4444433 24444444554454444443
No 80
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=50.50 E-value=1.6e+02 Score=27.39 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHh-----hCCCeEeeCCccccchh-hhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHH
Q psy9576 109 IMRTLERIEKIFY-----SIGFDITDGPEIETDFN-NFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIR 182 (338)
Q Consensus 109 ~~~~~~~Ir~~~~-----~~GF~Ev~~~~l~~~~~-nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~ 182 (338)
.++.+..|+++|. .+|+..|..|.++.... .-|.||--+ .|. +|.+.+- .+....+ +|.+.---|
T Consensus 8 tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~E-rpV-----~f~i~~~-~~~~~ei--vhSLaKWKR 78 (330)
T 12as_A 8 KQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAE-KAV-----QVKVKAL-PDAQFEV--VHSLAKWKR 78 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTC-CCC-----EECCSSS-TTCCEEE--CSCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCce-ecc-----eEecccC-CCceEEE--eeeHHHHHH
Confidence 3567888999999 99999999999876322 112122111 111 2333221 0111222 232222222
Q ss_pred -HHhc--CCCCceEEEeeeEEEeCC---CCCCCcceeEEEEEEEc--CCCCHHHHHHHHHHHH
Q psy9576 183 -YSKI--NKPPIKVITSGRVYRIDS---DSTHSPMFHQIEGLWID--KNISFSDLKGVYLNFI 237 (338)
Q Consensus 183 -~l~~--~~~pirifeiG~Vyr~d~---d~th~~~f~ql~~l~~g--~~~~f~dLKg~l~~ll 237 (338)
+|.+ -.+.-.+|.--+..|+|. |.+|+..+.|.++=.+. ++-++.-||.+|..+.
T Consensus 79 ~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy 141 (330)
T 12as_A 79 QTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIW 141 (330)
T ss_dssp HHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHH
Confidence 3344 234568999999999983 68999999999986663 4577888888865554
No 81
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=48.28 E-value=44 Score=32.47 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhccCCCeeEEEccCCC---C-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCe
Q psy9576 226 FSDLKGVYLNFIRVFFESDNIQIRFRPSYF---P-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKY 301 (338)
Q Consensus 226 f~dLKg~l~~ll~~lfg~~~~~~r~~ps~f---p-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~ 301 (338)
+.+|+.+++.+ ..+ |. ...+.+.|+.- . ||..-+|+. +..|. .-.|++-|--. ..+..||-++ ..
T Consensus 265 ~~~L~~l~~~l-~~~-gi-~~~~~~D~~lvRgldYYTG~vFE~~--~~~g~----~~~I~~GGRYD-~Lv~~fg~~~-~~ 333 (456)
T 3lc0_A 265 VKELRQFFEQV-EAY-GY-GDWVLFDASVVRGLAYYTGIVFEGF--DREGK----FRALCGGGRYD-NLLTTYGSPT-PI 333 (456)
T ss_dssp HHHHHHHHHHH-HHH-TC-GGGEEECTTCCCSCTTCCSEEEEEE--ETTSC----SSCSEEEEECS-SHHHHTTCSS-CC
T ss_pred HHHHHHHHHHH-HHc-CC-CceEEEecCccCCccccCCeEEEEE--ECCCC----cceEeecccHH-HHHHHhCCCC-CC
Confidence 66677666654 445 75 33467777622 2 554446654 31121 12688889888 5667787641 27
Q ss_pred EEEEEeechhHHHHHH
Q psy9576 302 IGFAFGSGLERLTMLR 317 (338)
Q Consensus 302 ~~~afelglerlam~~ 317 (338)
|++.|.+|+|||+.+.
T Consensus 334 PavGFaig~eRl~~~l 349 (456)
T 3lc0_A 334 PCAGFGFGDCVIVELL 349 (456)
T ss_dssp CEEEEEEESSHHHHHH
T ss_pred CEEEEEeEHHHHHHHH
Confidence 8999999999998764
No 82
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=46.14 E-value=68 Score=30.53 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhccCCCeeEEEccCCCC----CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeE
Q psy9576 227 SDLKGVYLNFIRVFFESDNIQIRFRPSYFP----FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302 (338)
Q Consensus 227 ~dLKg~l~~ll~~lfg~~~~~~r~~ps~fp----f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~ 302 (338)
.+|+.+.+. +..+ |. ...+.+.|+.-. ||..-+|+. . . +.|- .|++-|.-. ..+..+|-+ .|
T Consensus 247 ~~l~~l~~~-L~~~-gi-~~~~~~D~~lvRgldYYTG~vFe~~--~-~---~~g~-~i~~GGRYD-~L~~~fG~~---~p 312 (400)
T 3od1_A 247 AEMTKLYEV-LESY-GA-SEYVKFDLTLVLHMSYYTGVVFEGY--G-N---RLGV-PLCSGGRYD-ELLSKFHRP---AQ 312 (400)
T ss_dssp HHHHHHHHH-HHHT-TC-GGGEEEETTCCSCSSSCCSEEEEEE--E-T---TCSS-EEEEEEECT-THHHHTTCC---CC
T ss_pred HHHHHHHHH-HHHc-CC-CceEEEeCCccCCCcccCCeEEEEE--E-C---CCCC-eeecccccc-hhhhccCCC---CC
Confidence 344443333 2444 64 334777776322 454446554 3 1 2232 788889998 566778864 78
Q ss_pred EEEEeechhHHHHHHc
Q psy9576 303 GFAFGSGLERLTMLRY 318 (338)
Q Consensus 303 ~~afelglerlam~~~ 318 (338)
++.|.+|+|||+.+.-
T Consensus 313 avGfaiglerL~~~l~ 328 (400)
T 3od1_A 313 ATGFGVRIDLLVEALN 328 (400)
T ss_dssp EEEEEEEHHHHHHHHC
T ss_pred EEEEEeeHHHHHHHHH
Confidence 9999999999987654
No 83
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=45.09 E-value=29 Score=23.16 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q psy9576 6 KLLIQAKIDFSTAVSISSLENAKSYY 31 (338)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~l~~~~~~~ 31 (338)
..+++|...|+++.+.+++.++|...
T Consensus 19 ~~r~~Fe~ki~~~~tE~q~k~iKr~I 44 (49)
T 3bbz_A 19 QMKQAFEQRLAKASTEDALNDIKRDI 44 (49)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45789999999999999999999764
No 84
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=35.70 E-value=1.3e+02 Score=28.61 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=27.2
Q ss_pred eEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 279 EISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 279 eig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
.|++-|-... .+..++......|++.|++|+|||+.+.
T Consensus 314 ~i~~GGRYD~-L~~~~~~~g~~~pavGfaigieRl~~~l 351 (464)
T 4g84_A 314 SVAAGGRYDG-LVGMFDPKGRKVPCVGLSIGVERIFSIV 351 (464)
T ss_dssp EEEEEEECCS-TGGGTSTTCCCCCEEEEEECHHHHHHHH
T ss_pred eeccCCchhH-HHHHhccCCCCCCCccccccHHHHHHHH
Confidence 5777787773 5566754323478999999999997764
No 85
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=33.20 E-value=1.1e+02 Score=26.53 Aligned_cols=33 Identities=6% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCChhHhhhhchhhHHHHHHHHH----HHHHHHHHHH
Q psy9576 47 NISINERKRYGEIINSIKINIKK----ELNIHRDILK 79 (338)
Q Consensus 47 ~l~~eer~~~G~~~n~~k~~~~~----~~~~~~~~l~ 79 (338)
.+++++|..+...++++++.++. .+.++.+.|+
T Consensus 168 ~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~ 204 (219)
T 4e81_A 168 KLPADDKTAIESALTALETALKGEDKAAIEAKMQELA 204 (219)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 57889999998888888887753 3444444443
No 86
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=31.84 E-value=29 Score=27.31 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.3
Q ss_pred HHHHhcCCCHHHHHHHHHHhcCCc
Q psy9576 12 KIDFSTAVSISSLENAKSYYLGKN 35 (338)
Q Consensus 12 ~~~i~~~~~~~~l~~~~~~~lGkk 35 (338)
.+.+-++++.+||+.+|..|+.||
T Consensus 44 Das~Vs~SD~~ELerVk~nfl~KK 67 (114)
T 2pyq_A 44 DASTVAGSDTAELETIKKNFLMKK 67 (114)
T ss_dssp HHHBCCTTCHHHHHHHHHHTTTTT
T ss_pred chhhhccCCHHHHHHHHHhHHHHH
Confidence 345567899999999999999877
No 87
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=30.67 E-value=53 Score=26.58 Aligned_cols=58 Identities=7% Similarity=0.155 Sum_probs=42.5
Q ss_pred hcCCCHHHHHHHHHHhcCCcchHHHHHHHhcC-CChhHhhhhchhhHHHHHHHHHHHHH
Q psy9576 16 STAVSISSLENAKSYYLGKNGKLTQYIKNIKN-ISINERKRYGEIINSIKINIKKELNI 73 (338)
Q Consensus 16 ~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~-l~~eer~~~G~~~n~~k~~~~~~~~~ 73 (338)
...-+-+++.++|+-.-|.=|.+-.-|..|.. |.|.++++.-+...++++.++.+=.+
T Consensus 44 ~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~A 102 (133)
T 3ls0_A 44 QGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAA 102 (133)
T ss_dssp HHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334456788899998888888887777665 67888888888888888777654333
No 88
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=29.99 E-value=67 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCChhHhhhhchhhHHHHHHHHH-------HHHHHHHHHHH
Q psy9576 47 NISINERKRYGEIINSIKINIKK-------ELNIHRDILKK 80 (338)
Q Consensus 47 ~l~~eer~~~G~~~n~~k~~~~~-------~~~~~~~~l~~ 80 (338)
++++++|..+-..++++++.++. .|.++.+.|+.
T Consensus 42 kl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~ 82 (120)
T 2p32_A 42 KISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEG 82 (120)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 47889999988888888887763 34555555543
No 89
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=28.90 E-value=4e+02 Score=27.55 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETD 136 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~ 136 (338)
-..+++.+..-++|.+.|-..+.++.+.+.
T Consensus 60 ~~~~eir~~f~~ff~~~gh~~~~s~~lvp~ 89 (739)
T 2ztg_A 60 FELDEMREYYLNFFERRGHGRIERYPVVAR 89 (739)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSBCT
T ss_pred CCHHHHHHHHHHHHHHCCCEEeCCcCcCCC
Confidence 346789999999999999999988877663
No 90
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.59 E-value=1.3e+02 Score=25.26 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHH
Q psy9576 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKK 69 (338)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~ 69 (338)
++++|.+++..+.. .+|.+..-++..+..++.. .+.+++.-+++-+.+++++.++..
T Consensus 75 ql~~I~~e~r~~~~---------~Lr~ql~akr~EL~aL~~a-~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 75 TAQKIYDDYYTQTS---------ALRQQLISKRYEYNALLTA-SSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655433 3444443344444444432 334445555566666666665544
No 91
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=27.08 E-value=1.5e+02 Score=27.74 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=39.3
Q ss_pred eEEEccCCCC----CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 247 QIRFRPSYFP----FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 247 ~~r~~ps~fp----f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
.+.+.|+.-. ||..-+|+. + . +.|- .|++-|--. ..+..+|-+ .|++.|.||+|||+.+.
T Consensus 300 ~i~~D~~lvRgldYYTG~vFe~~--~-~---~~g~-~i~~GGRYD-~L~~~fG~~---~pAvGFaiglerL~~~l 363 (373)
T 3rac_A 300 VVTFDLALHRELDYYTGLVFEMF--A-P---GVGA-PIAQGGRYD-ELLAQFGAG---APAVGFAFEVERVMAVL 363 (373)
T ss_dssp TEEECTTCCCSCTTCCSEEEEEE--C-T---TCSS-CSEEEEECT-TTTGGGTCC---CCCEEEEEEHHHHHHHH
T ss_pred eEEEeCCccCCCCccCCeEEEEE--E-C---CCCC-eEeeccccc-HHHHhhCCC---CCeEEEEEEHHHHHHHH
Confidence 5778776322 443335543 3 1 2222 678888887 466778764 78999999999998653
No 92
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=25.82 E-value=1.2e+02 Score=26.28 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=17.4
Q ss_pred CCChhHhhhhchhhHHHHHHHH
Q psy9576 47 NISINERKRYGEIINSIKINIK 68 (338)
Q Consensus 47 ~l~~eer~~~G~~~n~~k~~~~ 68 (338)
.+++++|..+-..++++++.++
T Consensus 165 ~~~~~~k~~i~~~l~~~~~wl~ 186 (227)
T 1u00_A 165 LLSAAERQVIDDAAAHLSEVAQ 186 (227)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 5788888888888888877654
No 93
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=24.31 E-value=1.9e+02 Score=28.17 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=26.8
Q ss_pred eEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 279 EISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 279 eig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
.|++-|.... .+..++......|++.|.+|+|||+.+.
T Consensus 367 ~i~~GGRYD~-Lv~~f~~~G~~~pavGfa~gierl~~~l 404 (517)
T 4g85_A 367 SVAAGGRYDG-LVGMFDPKGRKVPCVGLSIGVERIFSIV 404 (517)
T ss_dssp CSEEEEECHH-HHHTTSSSCCCCCEEEEEECHHHHHHHH
T ss_pred eecCCCchhH-HHHHhccCCCCCCcccccchHHHHHHHH
Confidence 4666787774 5566643223378999999999998764
No 94
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=23.56 E-value=1.3e+02 Score=22.73 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=18.1
Q ss_pred CCChhHhhhhchhhHHHHHHHH
Q psy9576 47 NISINERKRYGEIINSIKINIK 68 (338)
Q Consensus 47 ~l~~eer~~~G~~~n~~k~~~~ 68 (338)
++++++|..+-..+++++..++
T Consensus 28 kl~~~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 28 KINDEDKQKILDKCNEIISWLD 49 (113)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 4788999888888888887775
No 95
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=22.80 E-value=3.2e+02 Score=25.02 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=39.5
Q ss_pred eEEEccCCC---C-CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHH
Q psy9576 247 QIRFRPSYF---P-FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLR 317 (338)
Q Consensus 247 ~~r~~ps~f---p-f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~ 317 (338)
.+.+.|+.- . ||..-+|+. + . +.+ -.|++-|.-. ..++.+| . ..|++.|.+|+|||+.+.
T Consensus 271 ~~~~D~~lvrgldYYtG~vFe~~--~-~---~~~-~~i~~GGRYD-~L~~~fg-~--~~pavGfaiglerl~~~l 334 (344)
T 1z7m_A 271 PIIIDLGMVPKMDYYTDLMFKAY--S-S---AAN-QPILSGGRYD-QLLSNFQ-E--EAFAIGFCCHMDTILKAL 334 (344)
T ss_dssp CCEECTTCCCSSTTCCSEEEEEE--E-T---TEE-EEEEEEEECH-HHHHTSS-S--CCCCEEEEEEHHHHHHHH
T ss_pred CEEEeCCCCCCCccCCCeEEEEE--E-C---CCC-CeEeeCccHH-HHHHHhC-C--CCCeEEEEEEHHHHHHHH
Confidence 466777632 2 454335554 3 1 112 2788889888 4677888 3 278999999999998764
No 96
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=20.79 E-value=45 Score=26.87 Aligned_cols=52 Identities=8% Similarity=0.126 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHhcC-CChhHhhhhchhhHHHHHHHHHHHHH
Q psy9576 22 SSLENAKSYYLGKNGKLTQYIKNIKN-ISINERKRYGEIINSIKINIKKELNI 73 (338)
Q Consensus 22 ~~l~~~~~~~lGkkg~l~~l~~~l~~-l~~eer~~~G~~~n~~k~~~~~~~~~ 73 (338)
+++.++|+-.-|.=|.+-.-|..|.. |.|.+|++.-+...++++.++.+=.+
T Consensus 47 ~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~A 99 (130)
T 3zsu_A 47 GDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQG 99 (130)
T ss_dssp TCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777776666666665655544 67888888888888888877664333
No 97
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=20.29 E-value=38 Score=26.94 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=13.7
Q ss_pred chhHHHHHHcCCCccccc
Q psy9576 309 GLERLTMLRYGIDDLRLF 326 (338)
Q Consensus 309 glerlam~~~~i~diR~~ 326 (338)
+-|||| +.|||.|.|-|
T Consensus 95 dYEkIA-f~YGITDlRGM 111 (124)
T 2lhu_A 95 EYERIA-FQHGVTDLRGM 111 (124)
T ss_dssp GHHHHH-HHTTCCCHHHH
T ss_pred hHHHHH-HHhCcHHHHHH
Confidence 357888 58999999966
No 98
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.07 E-value=98 Score=23.54 Aligned_cols=34 Identities=6% Similarity=0.256 Sum_probs=26.0
Q ss_pred hcCCChhHhhh-hchhhHHHHHHHHHHHHHHHHHH
Q psy9576 45 IKNISINERKR-YGEIINSIKINIKKELNIHRDIL 78 (338)
Q Consensus 45 l~~l~~eer~~-~G~~~n~~k~~~~~~~~~~~~~l 78 (338)
...||||+|+. +-+.|.++..+|+....++....
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~ 42 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQREALK 42 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799988765 77788888888888877765443
Done!