Query psy9576
Match_columns 338
No_of_seqs 249 out of 1928
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 23:11:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9576.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9576hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jjca_ d.104.1.1 (A:) Phenyl- 100.0 1.9E-79 1.4E-83 565.4 21.4 244 91-338 1-263 (266)
2 d1jjcb5 d.104.1.1 (B:475-681) 100.0 2E-28 1.4E-32 218.2 19.2 186 92-311 2-202 (207)
3 d2iy5a1 a.2.7.2 (A:15-84) Phen 99.6 1.6E-17 1.1E-21 122.2 0.1 70 21-90 1-70 (70)
4 d1c0aa3 d.104.1.1 (A:107-287,A 99.3 5.9E-11 4.3E-15 111.9 20.2 114 109-240 35-149 (346)
5 d1nnha_ d.104.1.1 (A:) Hypothe 99.3 3.5E-11 2.6E-15 111.0 16.5 120 109-241 17-140 (293)
6 d1e1oa2 d.104.1.1 (A:161-502) 99.2 5.6E-10 4.1E-14 104.7 20.0 111 110-240 27-140 (342)
7 d1eova2 d.104.1.1 (A:205-557) 99.2 2.1E-09 1.5E-13 101.2 22.8 110 109-237 47-158 (353)
8 d1l0wa3 d.104.1.1 (A:105-294,A 99.2 1E-09 7.3E-14 103.7 20.3 113 109-241 43-158 (356)
9 d1b8aa2 d.104.1.1 (A:104-438) 99.0 2.7E-08 1.9E-12 92.6 20.8 95 109-221 37-133 (335)
10 d1n9wa2 d.104.1.1 (A:111-414) 98.9 2.9E-08 2.1E-12 91.2 18.0 108 109-237 18-128 (304)
11 d1z7ma1 d.104.1.1 (A:6-323) AT 98.5 1.1E-06 7.8E-11 80.5 14.2 131 107-243 16-151 (318)
12 d1kmma2 d.104.1.1 (A:4-325) Hi 98.4 8.4E-06 6.1E-10 74.5 19.1 107 109-221 19-131 (322)
13 d1qe0a2 d.104.1.1 (A:1-325) Hi 98.3 1.8E-05 1.3E-09 72.3 18.4 108 109-221 19-133 (325)
14 d1h4vb2 d.104.1.1 (B:2-325) Hi 98.3 6.1E-06 4.5E-10 75.6 15.0 130 108-243 18-155 (324)
15 d1wu7a2 d.104.1.1 (A:3-329) Hi 98.1 1.5E-05 1.1E-09 73.0 13.9 107 109-223 21-131 (327)
16 d1nj8a3 d.104.1.1 (A:0-267) Pr 98.0 0.00015 1.1E-08 64.5 17.4 197 109-316 38-260 (268)
17 d1seta2 d.104.1.1 (A:111-421) 97.5 0.0035 2.5E-07 56.8 18.4 173 110-296 60-252 (311)
18 d1usya_ d.104.1.1 (A:) ATP pho 97.4 0.00071 5.2E-08 60.2 13.0 107 116-243 12-122 (275)
19 d1nj1a3 d.104.1.1 (A:19-283) P 97.4 0.0023 1.7E-07 56.2 15.9 196 109-314 36-255 (265)
20 d1nyra4 d.104.1.1 (A:242-532) 97.3 0.00042 3.1E-08 62.5 9.2 128 109-243 33-174 (291)
21 d1qf6a4 d.104.1.1 (A:242-532) 96.9 0.0033 2.4E-07 56.4 11.6 126 109-243 33-172 (291)
22 d1hc7a2 d.104.1.1 (A:5-276) Pr 96.7 0.035 2.5E-06 48.0 16.9 194 109-314 43-262 (272)
23 d1b76a2 d.104.1.1 (A:1-394) Gl 96.1 0.1 7.4E-06 47.0 16.4 111 110-221 43-181 (331)
24 d1g5ha2 d.104.1.1 (A:41-330) T 95.9 0.011 8.1E-07 52.8 8.5 109 170-284 113-238 (290)
25 d1atia2 d.104.1.1 (A:1-394) Gl 93.2 0.23 1.7E-05 45.6 10.4 111 169-284 182-309 (394)
26 d1riqa2 d.104.1.1 (A:1-236) Al 67.0 32 0.0023 28.5 11.5 85 110-222 5-100 (236)
27 d1seta1 a.2.7.1 (A:1-110) Sery 47.2 43 0.0032 23.7 11.1 32 39-70 52-83 (110)
28 d1z7ma1 d.104.1.1 (A:6-323) AT 45.4 34 0.0025 28.7 8.4 73 233-316 238-312 (318)
29 d1j5wa_ d.104.1.1 (A:) Glycyl- 39.5 30 0.0022 29.2 6.6 166 109-329 3-180 (281)
30 d2pyqa1 a.279.1.1 (A:1-113) Un 31.8 14 0.001 27.2 2.7 24 12-35 43-66 (113)
31 d1mlda2 d.162.1.1 (A:145-313) 31.5 4.6 0.00034 31.5 -0.1 38 32-71 126-163 (169)
32 d2dy1a4 d.58.11.1 (A:378-454) 29.5 11 0.00082 25.5 1.8 19 274-292 42-60 (77)
33 d1wu7a2 d.104.1.1 (A:3-329) Hi 28.0 71 0.0051 26.7 7.5 70 237-316 247-318 (327)
34 d1h4vb2 d.104.1.1 (B:2-325) Hi 21.7 2E+02 0.015 23.5 9.3 65 246-316 248-314 (324)
35 d1u00a1 a.8.4.1 (A:504-615) Ch 21.0 93 0.0068 21.9 5.8 66 3-68 5-71 (112)
36 d2bv3a4 d.58.11.1 (A:404-478) 20.0 15 0.0011 24.9 0.8 19 274-292 42-60 (75)
No 1
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.9e-79 Score=565.37 Aligned_cols=244 Identities=45% Similarity=0.917 Sum_probs=226.6
Q ss_pred cCCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCcc-----
Q psy9576 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV----- 165 (338)
Q Consensus 91 ~id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~----- 165 (338)
+||+|+|+.....|+.||+++++++|+++|.+|||+|+.+|+++++++|||+||+|++||||+++|||||+++..
T Consensus 1 kiDvtlPg~~~~~G~~HPl~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~ 80 (266)
T d1jjca_ 1 RVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGP 80 (266)
T ss_dssp CCCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECT
T ss_pred CcceeCCCCCCCCCCCChHHHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999986521
Q ss_pred ----CCCcceEeccchHHHHHHHhcCCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 166 ----SNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 166 ----~~~~~~LRt~lsp~~l~~l~~~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
.....+||||||+++++.|.++.+|+++|++|+|||+| .|+||+|+|||++|+++|+++++.+||++++.|++++
T Consensus 81 ~~~~~~~~~lLRTHTS~~q~r~~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~ 160 (266)
T d1jjca_ 81 LGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 160 (266)
T ss_dssp TSCEECSCEEECSSSTHHHHHHHHHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccCCcHHHHHHHhccCCCceEEecccceecCCCCCcccccceeeeeeeccccccHHHHHHHHHHHHHHh
Confidence 12346999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred ccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCC-------CCC--CCeEEEEEeechh
Q psy9576 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMN-------LDP--EKYIGFAFGSGLE 311 (338)
Q Consensus 241 fg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~g-------i~~--~~~~~~afelgle 311 (338)
||. +.++||+|+|||||+||+|++|+|. + +++|+||||||||||+||+++| +|| +.|+|||||||||
T Consensus 161 f~~-~~~~R~~p~yFPFTePS~Ev~v~~~--~-~~~WlEilG~Gmv~p~vL~~~gi~~~~~g~~~~~~~~~g~AfGlGlE 236 (266)
T d1jjca_ 161 FGP-DSKVRFQPVYFPFVEPGAQFAVWWP--E-GGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVE 236 (266)
T ss_dssp HCT-TCCEEEEECCCTTEEEEEEEEEEEG--G-GTEEEEEEEEEEECHHHHHHHHHHHHTTTCCCCCTTCEEEEEEEEHH
T ss_pred cCC-CcEEEEecccCCCccCCcceEEEEe--e-cCCcceEEeecccCHHHHHhcCCchhhccCCccccCCeEEEEeecHH
Confidence 885 7889999999999999999999982 2 3569999999999999999875 444 2489999999999
Q ss_pred HHHHHHcCCCcccccccCChhhhccCC
Q psy9576 312 RLTMLRYGIDDLRLFYKGNINFLKQFT 338 (338)
Q Consensus 312 rlam~~~~i~diR~~~~~d~rfl~qf~ 338 (338)
||||++|||+|||+||+||+|||+||+
T Consensus 237 RlAMl~~gI~DIR~f~~~D~rfl~QFk 263 (266)
T d1jjca_ 237 RLAMLRYGIPDIRYFFGGRLKFLEQFK 263 (266)
T ss_dssp HHHHHHHTCSCGGGTTTCCHHHHGGGG
T ss_pred HHHHHHcCCChHHHHhcCCHHHHHHhh
Confidence 999999999999999999999999995
No 2
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}
Probab=99.96 E-value=2e-28 Score=218.23 Aligned_cols=186 Identities=21% Similarity=0.326 Sum_probs=150.0
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcce
Q psy9576 92 IDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPL 171 (338)
Q Consensus 92 id~tlp~~~~~~G~~hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~ 171 (338)
||.++|.. ...|...| .++.++||++|+++||+|+.++.+++.. ..+.++... +.+.|.||+ ++++++
T Consensus 2 iP~~lP~~-~~~~~~~~-~~~~~~ir~~L~~~Gf~Ev~tysf~s~~-~~~~~~~~~--------~~i~l~NPi-s~e~~~ 69 (207)
T d1jjcb5 2 LPAFFPAP-DNRGVEAP-YRKEQRLREVLSGLGFQEVYTYSFMDPE-DARRFRLDP--------PRLLLLNPL-APEKAA 69 (207)
T ss_dssp CCCCCCCG-GGTTTTHH-HHHHHHHHHHHHHHTCEECCCCSEECTT-HHHHTTCCC--------CSCEESSCS-SGGGSE
T ss_pred CCCCCCCC-CCCCCChh-HHHHHHHHHHHHHCCcchhcCCCcCCHH-HHHhhcCCC--------CcEEEeCCc-chhhhh
Confidence 78889973 33455555 5788999999999999999999998875 445555432 347899996 899999
Q ss_pred EeccchHHHHHHHhc----CCCC-ceEEEeeeEEEeCCCCCCCcceeEEEEEEEcC----------CCCHHHHHHHHHHH
Q psy9576 172 LRTHTSPMQIRYSKI----NKPP-IKVITSGRVYRIDSDSTHSPMFHQIEGLWIDK----------NISFSDLKGVYLNF 236 (338)
Q Consensus 172 LRt~lsp~~l~~l~~----~~~p-irifeiG~Vyr~d~d~th~~~f~ql~~l~~g~----------~~~f~dLKg~l~~l 236 (338)
|||+++|+++++++. +.++ +++||+|+||+.+ +...+++++.|. .++|+++||+|+.+
T Consensus 70 lR~sLlpgLL~~~~~N~~r~~~~~~~lFEiG~vf~~~-------~~~~~~~~~~g~~~~~~~~~~~~~df~~~Kg~v~~l 142 (207)
T d1jjcb5 70 LRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRER-------EETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEAL 142 (207)
T ss_dssp ECSCSHHHHHHHHHHHHHHSCCSEEEEEEEEEEESSS-------EEEEEEEEEEESCBSCTTSSCCBCHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHhCcccccccceeeEeeeeeeecc-------ccccchhhhhhcccccccccccchhHHHHHHHHHHH
Confidence 999999999999963 3344 7999999999654 235667777763 36799999999999
Q ss_pred HHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechh
Q psy9576 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLE 311 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgle 311 (338)
+..+ |. .+++.+...|+.||+..+.|++ +|+ +||.+|+|||+|++++||+ ++++|||+|+
T Consensus 143 l~~l-g~---~~~~~~~~~~~~hpg~~a~I~~-~~~------~iG~~G~l~p~i~~~~~i~----~v~~~Ei~l~ 202 (207)
T d1jjcb5 143 FARL-GL---AFRVEAQAFPFLHPGVSGRVLV-EGE------EVGFLGALHPEIAQELELP----PVHLFELRLP 202 (207)
T ss_dssp HHHH-TC---CEEEEECCCTTEEEEEEEEEEE-SSS------EEEEEEEECHHHHHHTTCC----CCEEEEEEES
T ss_pred HHhh-hc---ccccccccCCccCCCeEEEEEE-CCe------EEEEEEEECHHHHHHcCCC----ceEEEEEeCC
Confidence 9998 84 4677788889999999999987 222 8999999999999999996 4899999985
No 3
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.62 E-value=1.6e-17 Score=122.16 Aligned_cols=70 Identities=31% Similarity=0.554 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHHHHHHHHHHHhhHHHhhccc
Q psy9576 21 ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTN 90 (338)
Q Consensus 21 ~~~l~~~~~~~lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (338)
+++|+++|++||||||.|+.+|++|+++|+|+||.+|+.+|++|+.++.+++++++.|+...++.++.+|
T Consensus 1 leeLe~~r~~~lGKkG~i~~~~k~l~~l~~eek~~~G~~lN~~K~~i~~~~~~~~~~l~~~~~~~~l~~E 70 (70)
T d2iy5a1 1 LEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEEAALKEALERE 70 (70)
T ss_dssp CHHHHHHHHHHHHHHHHTTSTTSCTTTGGGCCTTHHHHHHHHHHHHHTHHHHHHHHHHHTTHHHHHHHHC
T ss_pred ChHHHHHHHHHhCchhHHHHHHHHHcCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999888654
No 4
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=99.31 E-value=5.9e-11 Score=111.88 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+.+.||++|.+.||.||.+|.++.... + ...+.+...+.. ..+...||+|.--.+-+.+....
T Consensus 35 Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~-------~------g~~~~~~~~~~~-~~~~~~L~~Spel~lk~ll~~g~ 100 (346)
T d1c0aa3 35 RAKITSLVRRFMDDHGFLDIETPMLTKATP-------E------GARDYLVPSRVH-KGKFYALPQSPQLFKQLLMMSGF 100 (346)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSSBCCCS-------S------SSCCCEEECSSS-TTCEEECCSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCCCC-------c------cccccccccccC-CCccccCCcCHHHHHHHHhhcCC
Confidence 367899999999999999999999965311 0 111223322221 12223477764333333444433
Q ss_pred CCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 189 PPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
-+||++|+|||++ .+.+|.+||+|+++..++ +++.++...++.+++.+
T Consensus 101 --~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~--~~~~~~m~~~E~li~~l 149 (346)
T d1c0aa3 101 --DRYYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRHL 149 (346)
T ss_dssp --CEEEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred --CceEEEeeeccccccCchhhhHhhhhcccccc--ccHhHhHHHHHHHHHHH
Confidence 3999999999999 578999999999988776 57888888888888764
No 5
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=99.28 E-value=3.5e-11 Score=111.00 Aligned_cols=120 Identities=15% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+++...+|++|.+.||.||.+|.+++....... .|+....+.+.+... .....|+||---.+-+.|..+-
T Consensus 17 Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~yL~~SPel~lk~lla~g~ 87 (293)
T d1nnha_ 17 QTKILEYMTDFFVKEGFKWLLPVIISPITDPLWP------DPAGEGMEPAEVEIY---GVKMRLTHSMILHKQLAIAMGL 87 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCS------CTTCCCCCCCEEEET---TEEEEECSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCC------ccccCccccccccCC---CceeecccChhhhHHHHHHhcc
Confidence 4678899999999999999999988653211111 122222233333211 1114566664333233555544
Q ss_pred CCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 189 PPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
. |||++|+|||.+. + ..|.|||+||++-+.. .++.|+...++.+++.++
T Consensus 88 ~--~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~--~d~~d~m~~~e~li~~~~ 140 (293)
T d1nnha_ 88 K--KIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER--AKMEDIMRLIERLVYGLF 140 (293)
T ss_dssp C--EEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEET--CCHHHHHHHHHHHHHHHH
T ss_pred c--cceeechhhhcCcccCCCCccchhhhhhcccccc--ccHHHHHHHHHHHHHHHH
Confidence 3 9999999999863 2 3599999999977765 467888888888776654
No 6
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=99.19 E-value=5.6e-10 Score=104.73 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhcC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKIN 187 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~~ 187 (338)
.++...+|++|.+.||.||.+|.+++.. .... .+.|.+.... ......|++| |.+. +.|...
T Consensus 27 s~i~~~iR~ff~~~gFiEV~TPil~~~~---------~~~~----~~~f~~~~~~-~~~~~yL~~S--pql~~k~~l~~g 90 (342)
T d1e1oa2 27 SKILAAIRQFMVARGFMEVETPMMQVIP---------GGAS----ARPFITHHNA-LDLDMYLRIA--PELYLKRLVVGG 90 (342)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSC---------CSSC----CCCCEEEETT-TTEEEEECSC--SHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEECCCccccC---------CCCC----CcceeecccC-CCcccccchh--hHHHHHHHhhhc
Confidence 5788999999999999999999986431 1111 1223221111 0112345554 5553 244444
Q ss_pred CCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHh
Q psy9576 188 KPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~l 240 (338)
. -++|++|+|||.+ .+..|.|||+|+++-+++ +++.|+...++.+++.+
T Consensus 91 ~--~~vf~i~p~FR~E~~~~rHl~EFtmlE~e~a~--~~~~d~m~~~e~l~~~i 140 (342)
T d1e1oa2 91 F--ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 140 (342)
T ss_dssp C--CEEEEEEEEECCCCCCC-CCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred c--cceeeeccccccccccccchHHHHHHHHHHHh--hhhhhHHHhhhHHHHHH
Confidence 3 3999999999987 477999999999999987 56788888777777654
No 7
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.17 E-value=2.1e-09 Score=101.17 Aligned_cols=110 Identities=12% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
..++...||++|.+.||.||.+|.+++..- ..+. +.|.+.-. .....||+|.--.+-+.|..+-
T Consensus 47 Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~----------eg~~---~~f~~~~~---~~~~yL~~Spel~lk~ll~~g~ 110 (353)
T d1eova2 47 QAGVCELFREYLATKKFTEVHTPKLLGAPS----------EGGS---SVFEVTYF---KGKAYLAQSPQFNKQQLIVADF 110 (353)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCS----------SSSS---CCCEEEET---TEEEEECSCTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCCCC----------cchh---ccccceee---CCcceeccchhhhhhhhhhccc
Confidence 356889999999999999999999965321 1111 33433211 1114677764333345555543
Q ss_pred CCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 189 PPIKVITSGRVYRID-SDS-THSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
. ++|++|+|||++ .+. +|.|||+|+++..++.+ ++.++..+++.++
T Consensus 111 ~--~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d-~~~~i~~~~e~l~ 158 (353)
T d1eova2 111 E--RVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEE-HYHEVLDTLSELF 158 (353)
T ss_dssp C--EEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSS-CTHHHHHHHHHHH
T ss_pred c--cceeechhhhccccccccccchhcccccccccch-hhHHHHHHHHHHH
Confidence 3 999999999998 455 69999999999988632 2344555444444
No 8
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=99.16 E-value=1e-09 Score=103.68 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHH--HHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQI--RYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l--~~l~~ 186 (338)
...+...+|++|.+.||.||.+|.+++... +. ..+.+...... ......|++| |.+. +.+..
T Consensus 43 Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~--------eg-----~~~~~~~~~~~-~~~~~yL~~S--pel~lk~ll~~ 106 (356)
T d1l0wa3 43 RHRVIKAIWDFLDREGFVQVETPFLTKSTP--------EG-----ARDFLVPYRHE-PGLFYALPQS--PQLFKQMLMVA 106 (356)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SS-----SCCCEEECTTS-TTEEEECCSC--SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccccCCC--------cc-----cccchhhhhcc-cccccCCCcC--hhHHHHHhhhc
Confidence 367889999999999999999999965411 00 01112211111 1111235554 5442 34444
Q ss_pred CCCCceEEEeeeEEEeC-CCCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhc
Q psy9576 187 NKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFF 241 (338)
Q Consensus 187 ~~~pirifeiG~Vyr~d-~d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lf 241 (338)
.. -+||++|+|||.+ .+.+|.+||+++++..++ +++.++...++.+++.++
T Consensus 107 g~--~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~--~~~~~~m~~~E~li~~v~ 158 (356)
T d1l0wa3 107 GL--DRYFQIARCFRDEDLRADRQPDFTQLDLEMSF--VEVEDVLELNERLMAHVF 158 (356)
T ss_dssp TC--SEEEEEEEEECCCCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHHH
T ss_pred cc--CcEEEEeccccccccCCcchhhhhHHHHhhhH--HHHHHHHHHHHHHHHHHH
Confidence 33 3999999999999 588999999999999987 567888888887776553
No 9
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=98.97 E-value=2.7e-08 Score=92.64 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
...+...||++|.+.||.||.+|.++...- ... .+.|.+... .+...||||.--.+-+.|..+.
T Consensus 37 Rs~i~~~iR~ff~~~gflEV~TPil~~~~~---------~~~----~~~f~~~~~---~~~~yL~~SpE~~lkrll~~g~ 100 (335)
T d1b8aa2 37 RSSVFKAVRDFFHENGFIEIHTPKIIATAT---------EGG----TELFPMKYF---EEDAFLAESPQLYKEIMMASGL 100 (335)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCC---------SSS----SSCCEEEET---TEEEEECSCSHHHHHHGGGTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCccCC---------chh----hhhcccccc---ccccccccChHHHHHHHHhhhh
Confidence 357889999999999999999999865311 111 123443332 1225677664444444555443
Q ss_pred CCceEEEeeeEEEeC-CCC-CCCcceeEEEEEEEc
Q psy9576 189 PPIKVITSGRVYRID-SDS-THSPMFHQIEGLWID 221 (338)
Q Consensus 189 ~pirifeiG~Vyr~d-~d~-th~~~f~ql~~l~~g 221 (338)
-++|++|+|||++ .++ .|.++|+|++..+..
T Consensus 101 --~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~ 133 (335)
T d1b8aa2 101 --DRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 133 (335)
T ss_dssp --CEEEEEEEEECCCSSCCSSCCSEEEEEEEEEES
T ss_pred --hhHHHhhcccccccccccccchHHHhhhHHHHH
Confidence 4999999999998 454 588899999887764
No 10
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=98.90 E-value=2.9e-08 Score=91.17 Aligned_cols=108 Identities=11% Similarity=0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHH-HHHHhcC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ-IRYSKIN 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~-l~~l~~~ 187 (338)
..++...||++|.+.||.||.+|.++... ++.++ +.|.++-- + ....|++| |.+ .+.|...
T Consensus 18 Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~--------~e~~~-----~~f~~~~~--~-~~~~L~~S--pel~k~ll~~g 79 (304)
T d1n9wa2 18 QAALVRGFRRYLDRQDFTEIFTPKVVRAG--------AEGGS-----GLFGVDYF--E-KRAYLAQS--PQLYKQIMVGV 79 (304)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC----------------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCccCCCC--------CCCCC-----ceECCccc--c-cchhcccc--HHHHHHHhhcc
Confidence 36788999999999999999999996531 11111 22333211 1 11456665 444 3444443
Q ss_pred CCCceEEEeeeEEEeC-C-CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHH
Q psy9576 188 KPPIKVITSGRVYRID-S-DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFI 237 (338)
Q Consensus 188 ~~pirifeiG~Vyr~d-~-d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll 237 (338)
-. +||++|+|||.+ . +.+|.++|+|+++.+... .+..++..+++.++
T Consensus 80 ~~--~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~-~~~~~~~~l~E~l~ 128 (304)
T d1n9wa2 80 FE--RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFI-ADEEDLMRLEEALL 128 (304)
T ss_dssp HS--EEEEEEEC-------------CCEEEEEEEESC-SSHHHHHHHHHHHH
T ss_pred cc--cceeehhhcccccccccccccHHHHHHHHHhhh-hhHHHHHHHHHHHH
Confidence 22 899999999988 3 457999999999888752 22344554444433
No 11
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=98.46 E-value=1.1e-06 Score=80.50 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc
Q psy9576 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 107 hp~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.....+.+.++++|...||+++.+|.++.. ..|..+.-......+ .+.|.+.++ +.+..+||+-+++..+|...+
T Consensus 16 ~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~-d~~~~~~~~~~~~~~--~~~~~~~d~--~g~~l~LRpD~T~~iaR~~~~ 90 (318)
T d1z7ma1 16 KSLRQIEGRLRKLFSLKNYQEVMPPSFEYT-QLYTALESNGKTFNQ--EKMFQFIKH--EGQSITLRYDFTLPLVRLYSQ 90 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECCCCSEEEH-HHHHHHHCSSSCCCT--TSCCEEECT--TCCEEEECCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchH-HHhhccCCCcccccc--cceeEeecC--CccEEEeeccccchHHHHHHH
Confidence 445678899999999999999999999764 345443322211111 233566555 356678999999999997754
Q ss_pred --CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 --NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|.|++.+|+|||.+. ...+..+|+|+.+=++|.+-.. .++-.++..+++.+ |.
T Consensus 91 ~~~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~~~~ad~Eii~l~~e~l~~l-gi 151 (318)
T d1z7ma1 91 IKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL-GL 151 (318)
T ss_dssp CCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH-TC
T ss_pred hcccCCcccccccceeEEccccccccchhhhhheeccccchhhHHHHHHHHHHHHHHHh-hh
Confidence 346899999999999984 4456779999999888865323 34666777777777 75
No 12
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=98.41 E-value=8.4e-06 Score=74.46 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhc-CCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTAL-NSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L-~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~- 186 (338)
...+.+.++++|...||+++.+|.++.. ..|... +-..+.+.+ +.+.+.+. +.+..+||+-+++...|.+..
T Consensus 19 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~-d~~~~~~g~~~~~~~~---~~~~~~d~--~g~~l~Lr~D~T~~iaR~~~~~ 92 (322)
T d1kmma2 19 WQRIEGTLKNVLGSYGYSEIRLPIVEQT-PLFKRAIGEVTDVVEK---EMYTFEDR--NGDSLTLRPEGTAGCVRAGIEH 92 (322)
T ss_dssp HHHHHHHHHHHHHTTTCEECBCCSEEEH-HHHHHHHCTTSHHHHH---TCEEEECT--TSCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCeEeECcccccH-HHhhcccCcchhhhHH---HHhhhhhc--ccccccccccccchhhHHHHhh
Confidence 4577888999999999999999999764 344322 211111111 12333333 345689999999999997753
Q ss_pred ---CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEc
Q psy9576 187 ---NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID 221 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g 221 (338)
...|.|++.+|.|||.+. ......+|.|+.+=++|
T Consensus 93 ~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG 131 (322)
T d1kmma2 93 GLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFG 131 (322)
T ss_dssp TCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEES
T ss_pred hhhhhhhhhHhhcccccccCCCCCCccchhhhhhHHHhc
Confidence 246999999999999984 45567788999998888
No 13
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=98.30 E-value=1.8e-05 Score=72.34 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
...+.+.++++|...||+++.+|.++.. ..|....-...+..+ ...+.+..+ +....+||+..++.+.+....
T Consensus 19 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~-d~l~~~~g~~~~~~~--~~~~~~~d~--~~~~~~lr~d~t~~~~r~~~~~~ 93 (325)
T d1qe0a2 19 WRYIENQLDELMTFYNYKEIRTPIFEST-DLFARGVGDSTDVVQ--KEMYTFKDK--GDRSITLRPEGTAAVVRSYIEHK 93 (325)
T ss_dssp HHHHHHHHHHHHHHHTCEECBCCSEEEH-HHHCC-------------CCEEECHH--HHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEeeCcccccH-HHhccccCCchhHHH--HHHhhhhcc--ccccccccccccccHHHHHHhhc
Confidence 4677888999999999999999999754 233321111111111 122444333 234478999977777775422
Q ss_pred ----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEc
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID 221 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g 221 (338)
...|+|++.+|+|||.+. ...+..+|+|+.+=++|
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG 133 (325)
T d1qe0a2 94 MQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIG 133 (325)
T ss_dssp GGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEES
T ss_pred cccccccchhhheecceeeeccccCCccceeeecceeecC
Confidence 236899999999999983 45567789999998888
No 14
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=98.29 E-value=6.1e-06 Score=75.62 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh-c
Q psy9576 108 PIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK-I 186 (338)
Q Consensus 108 p~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~-~ 186 (338)
....+.+.++++|...||+++.+|.++... .|....-+..+..+ ...|.+..+ +.+..+||+-+++.++|.+. .
T Consensus 18 ~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d-~l~~~~g~~~~~~~--~~~~~~~d~--~g~~l~LRpD~T~~iar~~~~~ 92 (324)
T d1h4vb2 18 MHQRIVATARKVLEAAGALELVTPIFEETQ-VFEKGVGAATDIVR--KEMFTFQDR--GGRSLTLRPEGTAAMVRAYLEH 92 (324)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGG-GGCCCSCC--------CCSCEEECT--TSCEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCccccHH-HhhcccCCchhHHH--HHHhhhhcc--CCcccccccccccHHHHHHHHh
Confidence 356788999999999999999999997653 44332212222111 233555555 45668999999999999654 2
Q ss_pred ----CCCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 187 ----NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ----~~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
...|.|++.+|+|||.+. ......+|+|+..=++|.+... .++..++..+++.+ |.
T Consensus 93 ~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~l-~~ 155 (324)
T d1h4vb2 93 GMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL-GL 155 (324)
T ss_dssp TGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred hhhhhchhhhheeeCcccccCcccCCCcceeccccccccCCCChHHHHHHHHHHHHHHHHh-cc
Confidence 246899999999999983 4456788999999999865333 23455666666666 64
No 15
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=98.13 E-value=1.5e-05 Score=73.02 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC-
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN- 187 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~- 187 (338)
...+.+.++++|...||+++.+|.++.. ..|... ..++ ....+|.+..+ +....+||+-++|...|.+.++
T Consensus 21 ~~~i~~~l~~~f~~~Gy~~I~tP~lE~~-d~~~~~-~g~~----~~~~~~~f~D~--~g~~l~LRpD~T~~iar~~~~~~ 92 (327)
T d1wu7a2 21 EKFIFKTAEEAAEAFGFRRIDFPSLEYL-DLYRIK-SGEE----LLQQTYSFVDK--GGREVTLIPEATPSTVRMVTSRK 92 (327)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEET-HHHHTT-SCTT----GGGGSCEEECT--TSCEEEECSCSHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCeEeECCccchH-hhcccc-Cchh----HHHHHhhhhcc--cchhhcccccccchhhhHhhhhh
Confidence 4567888999999999999999999754 334321 1111 11345766666 3566899999999999987542
Q ss_pred --CCCceEEEeeeEEEeCC-CCCCCcceeEEEEEEEcCC
Q psy9576 188 --KPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKN 223 (338)
Q Consensus 188 --~~pirifeiG~Vyr~d~-d~th~~~f~ql~~l~~g~~ 223 (338)
..|.|+|..|+|||.+. ...+..+|+|+.+=+.|.+
T Consensus 93 ~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 93 DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD 131 (327)
T ss_dssp TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC
T ss_pred hccccceeeccCcceeccccccCCcchhhhhhhhhcCCc
Confidence 35899999999999884 4556779999999999854
No 16
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=97.98 E-value=0.00015 Score=64.54 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCC--ccCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNR--YVSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np--~~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
.+++.+.+++.+...||++|.+|.+.+... +.+= ..|..-...+-+.+... ....+..+||+..-|+.....+.
T Consensus 38 ~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l-~~ks---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~ 113 (268)
T d1nj8a3 38 RRYTFEIIRNLLDESGHDEALFPMLIPEDL-LAKE---AEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 113 (268)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHH---CSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEeehhhhhhHh-hhcc---CCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhh
Confidence 467788899999999999999999876532 2211 11211111111222211 00123369999998988887754
Q ss_pred -----CCCCceEEEeeeEEEeCC-C---CCCCcceeEEEEEEE-cCC-----CCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRIDS-D---STHSPMFHQIEGLWI-DKN-----ISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~-d---~th~~~f~ql~~l~~-g~~-----~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
+..|+|++++|.|||.+. . -....+|+|++..++ ..+ ..+..+......++..+ |. ...+.-.
T Consensus 114 ~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~y~~if~~l-~l-~~~~~~~ 191 (268)
T d1nj8a3 114 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL-GI-PYLISKR 191 (268)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEEE
T ss_pred hccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccccchhhHHHHHHHHHHHHHHHhc-Cc-ceeeccc
Confidence 357999999999999994 2 235667876665432 221 33555666666777777 75 2222222
Q ss_pred cC--CCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CCC-e-EEEEEeechhHHHHH
Q psy9576 252 PS--YFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PEK-Y-IGFAFGSGLERLTML 316 (338)
Q Consensus 252 ps--~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~~-~-~~~afelglerlam~ 316 (338)
++ ..+.......+.... . .+.++|++.+=.+....-+++|+. .++ + --..+|++ +|+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~--~--~g~~~e~~t~~~lg~~~s~~f~l~y~~~dg~~~~~h~~~~G~~-eR~ia~ 260 (268)
T d1nj8a3 192 PEWDKFPGAEYTMAFDTIF--P--DGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGIS-DRVIAS 260 (268)
T ss_dssp CTTSCCTTCSEEEEEEEEC--T--TSCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEEC-THHHHH
T ss_pred cccccccchhcccchhhhh--h--ccccEEEeeecccCCCcChhcCCEEECCCCCCcceeeccCcHH-HHHHHH
Confidence 22 222222222233222 1 234678888766777777888883 111 0 12567888 887654
No 17
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=97.49 E-value=0.0035 Score=56.81 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc---
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI--- 186 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~--- 186 (338)
..+++-+.+.+...||+++..|.+..... +..-+..+.. ..|.+.+.+.. ..|+++-=+.+.-....
T Consensus 60 ~AL~~~~ld~~~~~gy~~v~~P~lv~~~~-~~~~G~~p~f----~~~~y~~~~~~-----~~LipTsE~~l~~~~~~~i~ 129 (311)
T d1seta2 60 LALLRFAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAY----RDQVWAIAETD-----LYLTGTAEVVLNALHSGEIL 129 (311)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEEEHHH-HHHHTCTTTT----GGGSCBBTTSS-----EEECSSTHHHHHHTTTTCEE
T ss_pred HHHHHHHHHhhhcccceEEeechhhccch-hhhccccccc----ccccccccccc-----eeecccccchhhhhhhhhhh
Confidence 34567777888899999999999987754 4444333221 12445554431 57775544434332222
Q ss_pred --CCCCceEEEeeeEEEeCC-C-------CCCCcceeEEEEEEEc-C--C---CCHHHHHHHHHHHHHHhccCCCeeEEE
Q psy9576 187 --NKPPIKVITSGRVYRIDS-D-------STHSPMFHQIEGLWID-K--N---ISFSDLKGVYLNFIRVFFESDNIQIRF 250 (338)
Q Consensus 187 --~~~pirifeiG~Vyr~d~-d-------~th~~~f~ql~~l~~g-~--~---~~f~dLKg~l~~ll~~lfg~~~~~~r~ 250 (338)
...|+|++..++|||++. . --..++|.+++..++- . . --+.++....+.+++.| |. ...+..
T Consensus 130 ~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L-~l-pyrvv~ 207 (311)
T d1seta2 130 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLL-EL-PYRLVE 207 (311)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHT-TC-CEEEEE
T ss_pred hhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhh-CC-cchhcc
Confidence 357999999999999983 1 1334688888876542 1 1 23678888999999998 85 333333
Q ss_pred ccCCCCCCCCceEEEEEee-cCCCCCCCeeEeeeeecCHHHhhhCCC
Q psy9576 251 RPSYFPFTEPSAEIDIVFQ-DGPLKGNWLEISGAGQVNPKVLCNMNL 296 (338)
Q Consensus 251 ~ps~fpf~~Ps~e~~i~~~-~g~~~~gwieig~~G~vhP~Vl~~~gi 296 (338)
.++-.-+.-.....||..+ .+ .+.|.||+.|--..--..+.++|
T Consensus 208 ~~~~dl~~~a~~~~diE~w~P~--~~~y~Ev~S~sn~~d~qsrRl~i 252 (311)
T d1seta2 208 VATGDMGPGKWRQVDIEVYLPS--EGRYRETHSCSALLDWQARRANL 252 (311)
T ss_dssp CCTTTSCTTCSEEEEEEEEEGG--GTEEEEEEEEEECTTHHHHHHTC
T ss_pred ccCCCCchHHHhhhHHHHhHhh--cCCcccccCceecchHHHhhccc
Confidence 4443222222345555443 22 23588999877777666667766
No 18
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Probab=97.45 E-value=0.00071 Score=60.18 Aligned_cols=107 Identities=17% Similarity=0.120 Sum_probs=75.6
Q ss_pred HHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcC--CCCceE
Q psy9576 116 IEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKIN--KPPIKV 193 (338)
Q Consensus 116 Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~--~~piri 193 (338)
........||+++.+|.++... .. .+.++.+.. ....+||+-+++..+|...++ ..|.|+
T Consensus 12 f~~~~~~~Gy~~i~tP~~E~~e-----------~~----~~~~F~D~~---g~~l~LRpD~T~~iaR~~~~~~~~~p~k~ 73 (275)
T d1usya_ 12 FYSKATKKGFSPFFVPALEKAE-----------EP----AGNFFLDRK---GNLFSIREDFTKTVLNHRKRYSPDSQIKV 73 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECS-----------SC----CSSCEEETT---SCEEEECCCHHHHHHHHHTTCTTCCCEEE
T ss_pred HHHHHHHcCCceeecCcccccc-----------cc----ccceeEcCC---CCEEEECCCCcHHHHHHHHHcCCCCCeee
Confidence 4556668999999999997532 11 122344433 345789999999999977653 458999
Q ss_pred EEeeeEEEeCCCCCCCcceeEEEEEEEcCCCCH--HHHHHHHHHHHHHhccC
Q psy9576 194 ITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISF--SDLKGVYLNFIRVFFES 243 (338)
Q Consensus 194 feiG~Vyr~d~d~th~~~f~ql~~l~~g~~~~f--~dLKg~l~~ll~~lfg~ 243 (338)
|.+|+|||.+. ....+|+|+.+=+.|.+-.. .++-.++..+++.+ |.
T Consensus 74 ~Y~g~VfR~~~--~~~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~l-gi 122 (275)
T d1usya_ 74 WYADFVYRYSG--SDLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF-FE 122 (275)
T ss_dssp ECCEEEEEEET--TEEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH-CC
T ss_pred eEEeeEEEeCC--CcccceeecCceeechhhHHHHHHHHHHHHHHHHhh-cc
Confidence 99999999863 24568899988888864323 34566666777777 74
No 19
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=97.41 E-value=0.0023 Score=56.25 Aligned_cols=196 Identities=11% Similarity=0.147 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCc--cCCCcceEeccchHHHHHHHhc
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY--VSNNKPLLRTHTSPMQIRYSKI 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~--~~~~~~~LRt~lsp~~l~~l~~ 186 (338)
...+.+-+++.+ ..||+++.+|.+.+...-... ..|..--..+.|.+.... ...+..+||++.=|+....++.
T Consensus 36 ~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~----sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~ 110 (265)
T d1nj1a3 36 RKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKE----AIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 110 (265)
T ss_dssp HHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTS----HHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhc----ccccccccccceeeeccCccccceeEEeecccccceEEeeee
Confidence 445667777765 459999999987544211110 011000001234443210 0122358999988888887753
Q ss_pred -----CCCCceEEEeeeEEEeCC----CCCCCcceeEEEEEEE-cC-----CCCHHHHHHHHHHHHHHhccCCCeeEEEc
Q psy9576 187 -----NKPPIKVITSGRVYRIDS----DSTHSPMFHQIEGLWI-DK-----NISFSDLKGVYLNFIRVFFESDNIQIRFR 251 (338)
Q Consensus 187 -----~~~pirifeiG~Vyr~d~----d~th~~~f~ql~~l~~-g~-----~~~f~dLKg~l~~ll~~lfg~~~~~~r~~ 251 (338)
+..|+|++++|.|||.+. .-....+|+|++.... .. ...+..+......++..+ |. .......
T Consensus 111 ~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-~l-~~~~~~~ 188 (265)
T d1nj1a3 111 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSL-GI-PYLITRR 188 (265)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH-TC-CCEEEEC
T ss_pred eeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHhhhhHHHHHHHHhhc-CC-ceeEEEc
Confidence 457999999999999994 2335678887765543 21 134556666777777777 75 2322223
Q ss_pred cCCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC-----CCCeE--EEEEeechhHHH
Q psy9576 252 PSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD-----PEKYI--GFAFGSGLERLT 314 (338)
Q Consensus 252 ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~-----~~~~~--~~afelglerla 314 (338)
++..-+.....+.++... .. .+.+++++.+=-+.=.--+++||. .+... ...+|++ +|+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~~-~g~~~e~~~~~~lg~~~s~~f~i~y~d~~g~~~~~h~~~~G~~-eR~i 255 (265)
T d1nj1a3 189 PPWDKFPGSEYTVAFDTL-MP-DGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLS-DRVI 255 (265)
T ss_dssp CTTTSCTTCSEEEEEEEE-CT-TSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEC-THHH
T ss_pred cCcccccccccccchhhc-cc-ccccceecchhhcchhhHHhcCCEEECCCCCEEEEEEecccHH-HHHH
Confidence 332222222344443321 11 233567774432322333455652 11111 1366777 7764
No 20
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=97.26 E-value=0.00042 Score=62.49 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+-+++.+...||+||.+|.+.+...-...=..|.. .. +.+.+.... +.+..+||++.=|......+.
T Consensus 33 ~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~--~~---~~~~~~~~~-~~~~~~L~pt~e~~~~~~~~~~~ 106 (291)
T d1nyra4 33 RREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHY--QE---DMFPPMQLD-ETESMVLRPMNCPHHMMIYANKP 106 (291)
T ss_dssp HHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHC--TT---SSCCCEEET-TTEEEEECSSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCEEEECccccchhHhhhhcccccc--cc---ceEEEeecc-ccccccccccchhHHHHhhhcEe
Confidence 4677888999999999999999999876332111000100 01 223222110 123468999988887776643
Q ss_pred ---CCCCceEEEeeeEEEeCC-CC----CCCcceeEEEEEEEcCC----CCHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRIDS-DS----THSPMFHQIEGLWIDKN----ISFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d~-d~----th~~~f~ql~~l~~g~~----~~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|++++|.|||++. .. ....+|+|.++...... --+..+...+..+++.+ |.
T Consensus 107 ~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~~~~~~~~i~~~l-Gl 174 (291)
T d1nyra4 107 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDF-GF 174 (291)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHT-TC
T ss_pred ccccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCCcccHHHHHHHHHHHHHHhhhc-Cc
Confidence 357999999999999993 22 35678999998776431 22455666677777777 85
No 21
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=96.90 E-value=0.0033 Score=56.37 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhc--
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI-- 186 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~-- 186 (338)
.+.+.+-+++.+...||+||.+|.+.+.. .+..=+ |-..-..+.+.+... .+..+||++.=|......++
T Consensus 33 ~~~L~~~i~e~~~~~G~~eV~~P~L~~~~-l~~~sG----~~~~~~~~~~~~~~~---~~~~~L~Pt~e~~~~~~~~~~~ 104 (291)
T d1qf6a4 33 FRELEVFVRSKLKEYQYQEVKGPFMMDRV-LWEKTG----HWDNYKDAMFTTSSE---NREYCIKPMNCPGHVQIFNQGL 104 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEETH-HHHHHS----HHHHHGGGCEEEEET---TEEEEECSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEcccccchh-HHhhhc----hhhhccchhcccccc---chhhcccccCcHHHHHHHHccc
Confidence 46788889999999999999999997762 222111 000000122333322 23368999988888777753
Q ss_pred ---CCCCceEEEeeeEEEeC-CC----CCCCcceeEEEEEEEcCCC----CHHHHHHHHHHHHHHhccC
Q psy9576 187 ---NKPPIKVITSGRVYRID-SD----STHSPMFHQIEGLWIDKNI----SFSDLKGVYLNFIRVFFES 243 (338)
Q Consensus 187 ---~~~pirifeiG~Vyr~d-~d----~th~~~f~ql~~l~~g~~~----~f~dLKg~l~~ll~~lfg~ 243 (338)
...|+|+++++.|||.+ .. -....+|+|.++......- .++++-..+..+++.+ |.
T Consensus 105 ~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~~~~~~i~~~l-Gl 172 (291)
T d1qf6a4 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTF-GF 172 (291)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGG-TC
T ss_pred cchhhcCeeEeecceeeecccccccccccccccceeccceeEecchhhHHHHHHHHHHHHHHHHHc-CC
Confidence 45799999999999998 32 2356789999988775321 2334444555566666 75
No 22
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}
Probab=96.74 E-value=0.035 Score=48.04 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceee-cCCc--cCCCcceEeccchHHHHHHHh
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI-KNRY--VSNNKPLLRTHTSPMQIRYSK 185 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i-~np~--~~~~~~~LRt~lsp~~l~~l~ 185 (338)
.+.+.+-+++.+...||++|.+|.+.+.. .+..-+ .|+.. ..+.++. .... ...+..+||++.-|......+
T Consensus 43 ~~~l~~~~~~~~~~~G~~eV~~P~l~~~~-l~~~sg---~~~~~-~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~ 117 (272)
T d1hc7a2 43 WENIQQVLDRMFKETGHQNAYFPLFIPMS-FLRKEA---EHVEG-FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWS 117 (272)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEST-TC-------------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEeeccccchH-Hhhhcc---cchhh-cccceeeeeccccccccchhhcccccccceeehhh
Confidence 46778888888999999999999876542 222211 12211 1122332 1110 012336999998888877664
Q ss_pred c-----CCCCceEEEeeeEEEeCC-C--CCCCcceeEEEEEEE--cC---CCCHHHHHHHHHHHHHHhccCCCeeEEEcc
Q psy9576 186 I-----NKPPIKVITSGRVYRIDS-D--STHSPMFHQIEGLWI--DK---NISFSDLKGVYLNFIRVFFESDNIQIRFRP 252 (338)
Q Consensus 186 ~-----~~~pirifeiG~Vyr~d~-d--~th~~~f~ql~~l~~--g~---~~~f~dLKg~l~~ll~~lfg~~~~~~r~~p 252 (338)
. ...|+|++++|.+||.+. . ..-..+|.+...-.. .+ ...+.+.......++..+... ......+
T Consensus 118 ~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 195 (272)
T d1hc7a2 118 KWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAI--PVIEGLK 195 (272)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEC
T ss_pred ceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhHHHHHHHHHHHHHHHhcch--hhhcCcc
Confidence 3 468999999999999983 2 122334443333332 21 123444444555555554221 1111111
Q ss_pred ---CCCCCCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCC----CCC-eE--EEEEeechhHHH
Q psy9576 253 ---SYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD----PEK-YI--GFAFGSGLERLT 314 (338)
Q Consensus 253 ---s~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~----~~~-~~--~~afelglerla 314 (338)
..++... ...++.+..+ .+..+|+|.|--+...--+.+||. ..+ .. ...+|++ +|+.
T Consensus 196 ~~~~~~~~~~--~~~~~~~~~~--~~r~~Ev~t~~~l~~~~s~r~~i~Y~d~dg~~~~vH~~~~G~~-eR~i 262 (272)
T d1hc7a2 196 TEKEKFAGAV--YTTTIEALMK--DGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLS-WRFI 262 (272)
T ss_dssp CTTTSCTTSS--EEEEEEEECT--TSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEE-THHH
T ss_pred cccccccccc--eecccccccc--CCCCEEcccceecccccchhcCCEEECCCCCEEEEEEccccHH-HHHH
Confidence 1222211 2222221111 223569988877777777888872 111 11 2466776 6754
No 23
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=96.09 E-value=0.1 Score=46.97 Aligned_cols=111 Identities=12% Similarity=-0.022 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHh--hCCCeEeeCCccccchhhhhhcC---------CC--CCCC---CCcCccceeecC-C-ccCCCcce
Q psy9576 110 MRTLERIEKIFY--SIGFDITDGPEIETDFNNFTALN---------SP--KNHP---ARSMHDTFYIKN-R-YVSNNKPL 171 (338)
Q Consensus 110 ~~~~~~Ir~~~~--~~GF~Ev~~~~l~~~~~nf~~L~---------~p--~~hp---ar~~~dt~~i~n-p-~~~~~~~~ 171 (338)
+.+.+.+|+.|+ +-|+.|+.+|.+.+.. .+.+=+ ++ ..++ .+....-+...- + ....+...
T Consensus 43 ~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~-lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (331)
T d1b76a2 43 NNLKQAWWRRNVYERDDMEGLDASVLTHRL-VLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGLLAY 121 (331)
T ss_dssp HHHHHHHHHHHTTSCSSEEEEBCCSEEEHH-HHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGGGEEE
T ss_pred HHHHHHHHHHHHhccCCeEEEeccccCChH-HhccCccccccCCceeeecccccccCccchhhccccccccccccCCccc
Confidence 456666676664 5799999999987652 222100 00 0000 000000011000 0 00234457
Q ss_pred EeccchHHHHHHH------hcCCCCceEEEeeeEEEeC-C---CCCCCcceeEEEEEEEc
Q psy9576 172 LRTHTSPMQIRYS------KINKPPIKVITSGRVYRID-S---DSTHSPMFHQIEGLWID 221 (338)
Q Consensus 172 LRt~lsp~~l~~l------~~~~~pirifeiG~Vyr~d-~---d~th~~~f~ql~~l~~g 221 (338)
||+-|-++..-.+ +.+..|++++++|+|||++ + ......+|+|.++-+--
T Consensus 122 lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~ 181 (331)
T d1b76a2 122 LRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFV 181 (331)
T ss_dssp ECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEE
T ss_pred ccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhhhc
Confidence 8888777664333 3357899999999999998 3 24566789998887654
No 24
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.89 E-value=0.011 Score=52.75 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=67.1
Q ss_pred ceEeccchHHHHHHH------hcCCCCceEEEeeeEEEeC-CC------CCCCcceeEEEEEEEcC----CCCHHHHHHH
Q psy9576 170 PLLRTHTSPMQIRYS------KINKPPIKVITSGRVYRID-SD------STHSPMFHQIEGLWIDK----NISFSDLKGV 232 (338)
Q Consensus 170 ~~LRt~lsp~~l~~l------~~~~~pirifeiG~Vyr~d-~d------~th~~~f~ql~~l~~g~----~~~f~dLKg~ 232 (338)
..||+-|.++..-.. .++..|+++.++|+|||++ +. -....+|.|++.-+.=+ +--+......
T Consensus 113 ~yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~~~~~~~~ 192 (290)
T d1g5ha2 113 GKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRH 192 (290)
T ss_dssp CEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred ceeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCCcchHHHHHHHHHH
Confidence 579999999875432 2356899999999999965 21 22356899999877532 1225666777
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
...+++.+ |.+...++++..-..+ ....+|+.+. . .-||.|+-++-
T Consensus 193 ~~~~~~~l-Gi~~~~~~~~~~~~~~--a~~~~die~~-~--p~g~~Ei~g~~ 238 (290)
T d1g5ha2 193 RLLWWRKF-AMSPSNFSSADCQDEL--GRKGSKLYYS-F--PWGKEPIETLW 238 (290)
T ss_dssp HHHHHHTT-CSSGGGEEEEEEECTT--SCEEEEEEEE-E--TTEEEEEEEEE
T ss_pred HHHHHHHc-CCChhheeecccchhh--cccceeeEEc-C--CCCEEEEEEec
Confidence 77788887 8733345554322112 2344555441 1 24687876653
No 25
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=93.16 E-value=0.23 Score=45.63 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred cceEeccchHHHHH----HH--hcCCCCceEEEeeeEEEeCCC----CCCCcceeEEEEEEE-cCCCC---HHHHHHHHH
Q psy9576 169 KPLLRTHTSPMQIR----YS--KINKPPIKVITSGRVYRIDSD----STHSPMFHQIEGLWI-DKNIS---FSDLKGVYL 234 (338)
Q Consensus 169 ~~~LRt~lsp~~l~----~l--~~~~~pirifeiG~Vyr~d~d----~th~~~f~ql~~l~~-g~~~~---f~dLKg~l~ 234 (338)
..+||+-|.-++.- ++ .++..|.-+..+|++||++.. --.+.||.|++.-+- +.+-. +..-.+...
T Consensus 182 ~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P~~~~~~~~yw~~~~~ 261 (394)
T d1atia2 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (394)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred eeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcccCCcccccceeeeeEEEEeCCcchHHHHHHHHHHH
Confidence 35899999877742 22 245789999999999999942 345678998887553 33221 222333344
Q ss_pred HHHHHhccCCCeeEEEccC---CCCCCCCceEEEEEeecCCCCCCCeeEeeee
Q psy9576 235 NFIRVFFESDNIQIRFRPS---YFPFTEPSAEIDIVFQDGPLKGNWLEISGAG 284 (338)
Q Consensus 235 ~ll~~lfg~~~~~~r~~ps---~fpf~~Ps~e~~i~~~~g~~~~gwieig~~G 284 (338)
.++..+ |.+...+||+.. ... .....+.|+.+. - .-||+|+-|+-
T Consensus 262 ~f~~~l-Gi~~~~lrfrqh~~~ElA-HYa~~~~DiE~~--f-p~Gw~El~GiA 309 (394)
T d1atia2 262 KWWQEM-GLSRENLVPYQQPPESSA-HYAKATVDILYR--F-PHGSLELEGIA 309 (394)
T ss_dssp HHHHHT-TCCGGGEEEEECCTTTSC-TTCSEEEEEEEE--E-TTEEEEEEEEE
T ss_pred HHHHHh-cCCccceeEEeecchhhh-hcccceEEEEEe--c-CCCcEechhhh
Confidence 556676 874445777653 222 113356666551 1 34899987654
No 26
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=66.98 E-value=32 Score=28.50 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHh-cCC
Q psy9576 110 MRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSK-INK 188 (338)
Q Consensus 110 ~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~-~~~ 188 (338)
+++.++-.++|.+.|...+.++++.+.+. | |....|-. .+ ..-|.. +- ...
T Consensus 5 ~eiR~~Fl~FF~~~gH~~v~s~slvp~~D-----------p------tlLFtnAG-----M~---~Fkp~f---lG~~~p 56 (236)
T d1riqa2 5 HEIRELFLSFFEKKGHTRVKSAPLVPEND-----------P------TLLFVNAG-----MV---PFKNVF---LGLEKR 56 (236)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCTTC-----------T------TCSSCCST-----TG---GGHHHH---TTSSCC
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcccCCC-----------C------Ceeeeccc-----ch---hhhhhh---cCcccc
Confidence 56788889999999999998877765321 1 11111210 00 112211 11 234
Q ss_pred CCceEEEeeeEEEe-----CC-----CCCCCcceeEEEEEEEcC
Q psy9576 189 PPIKVITSGRVYRI-----DS-----DSTHSPMFHQIEGLWIDK 222 (338)
Q Consensus 189 ~pirifeiG~Vyr~-----d~-----d~th~~~f~ql~~l~~g~ 222 (338)
+.-|+...=+|.|- |. +..|.--|.||.-..-|.
T Consensus 57 ~~~r~~~~QkCiR~~gk~nDld~VG~t~rH~TfFEMLGn~SFgd 100 (236)
T d1riqa2 57 PYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGD 100 (236)
T ss_dssp SCSEEEEEEEEECEETTEECTTTTTTSSSCCSEEEEEEEEESSS
T ss_pred CCCccccccccccccCccchhhhcCCcccchhhhhhccccccCc
Confidence 56789999999985 42 346777778877666563
No 27
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=47.18 E-value=43 Score=23.69 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=23.1
Q ss_pred HHHHHHhcCCChhHhhhhchhhHHHHHHHHHH
Q psy9576 39 TQYIKNIKNISINERKRYGEIINSIKINIKKE 70 (338)
Q Consensus 39 ~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~ 70 (338)
+.+-++|++...+++.++=+.++.+++++..+
T Consensus 52 N~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~l 83 (110)
T d1seta1 52 NQVAKRVPKAPPEEKEALIARGKALGEEAKRL 83 (110)
T ss_dssp HHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 45567788888888777777777777777554
No 28
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=45.45 E-value=34 Score=28.72 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHHHhccCCCeeEEEccCCCCC--CCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeech
Q psy9576 233 YLNFIRVFFESDNIQIRFRPSYFPF--TEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGL 310 (338)
Q Consensus 233 l~~ll~~lfg~~~~~~r~~ps~fpf--~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelgl 310 (338)
|..+++.+ +. ...+.+.++..+. .+-|.-..++. . +.+ -.|++-|.-+ ..++.+|-+ .|++.|.+++
T Consensus 238 l~~~~~~~-~~-~~~i~~d~~~~r~~~YYtG~vF~~~~-~---~~~-~~i~~GGRYD-~L~~~~g~~---~~avGfsi~l 306 (318)
T d1z7ma1 238 LKEFSEKL-SM-IKPIIIDLGMVPKMDYYTDLMFKAYS-S---AAN-QPILSGGRYD-QLLSNFQEE---AFAIGFCCHM 306 (318)
T ss_dssp HHHHHHHH-TT-TSCCEECTTCCCSSTTCCSEEEEEEE-T---TEE-EEEEEEEECH-HHHHTSSSC---CCCEEEEEEH
T ss_pred HhhHHHHh-hh-ccccccCccccCCCcCCCCeEEEEEE-C---CCC-CeEEECcchH-HHHHhcCCC---CCEEEEEeeH
Confidence 34455555 54 3456777765441 11234444444 1 112 2688889888 567888854 5789999999
Q ss_pred hHHHHH
Q psy9576 311 ERLTML 316 (338)
Q Consensus 311 erlam~ 316 (338)
|||..+
T Consensus 307 d~i~~~ 312 (318)
T d1z7ma1 307 DTILKA 312 (318)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999654
No 29
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=39.51 E-value=30 Score=29.18 Aligned_cols=166 Identities=17% Similarity=0.232 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhhCCCeEeeCCccccchhhhhhcCCCCCCCCCcCccceeecCCccCCCcceEeccchHHHHHHHhcCC
Q psy9576 109 IMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINK 188 (338)
Q Consensus 109 ~~~~~~~Ir~~~~~~GF~Ev~~~~l~~~~~nf~~L~~p~~hpar~~~dt~~i~np~~~~~~~~LRt~lsp~~l~~l~~~~ 188 (338)
.+.++-.+.++.+..|......+.++-... || +|. +.|| ++ +.
T Consensus 3 fq~~i~~L~~~W~~~gC~i~qpyd~evGAg------------------T~---~p~-----T~lr---------~l--gp 45 (281)
T d1j5wa_ 3 LQDVIMKLNDFWASKGCLLEQPYDMEVGAG------------------TF---HPA-----TFFG---------SL--RK 45 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSSCCSSG------------------GG---SHH-----HHTG---------GG--CS
T ss_pred HHHHHHHHHHHHHHCCCEEECCcccccccc------------------cC---ChH-----HHHh---------hc--CC
Confidence 356777888889999988776665532210 11 231 2222 21 35
Q ss_pred CCceEEEeeeEEEeCC-----CCCCCcceeEEEEEEEcCCCCHHHHHHHHHHHHHHhccCC--CeeEEEccCCCCCCCCc
Q psy9576 189 PPIKVITSGRVYRIDS-----DSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESD--NIQIRFRPSYFPFTEPS 261 (338)
Q Consensus 189 ~pirifeiG~Vyr~d~-----d~th~~~f~ql~~l~~g~~~~f~dLKg~l~~ll~~lfg~~--~~~~r~~ps~fpf~~Ps 261 (338)
.|.++--+-.+.|+.. .+..+-.++|.-.++--...++-+| --.=++.+ |++ .-++||..+. |-.|+
T Consensus 46 ~pw~~ayvqpsrRP~DgRYg~NPNRlq~y~QfQVi~KPsp~n~q~l---yL~SL~~i-gid~~~hDIrfvEDn--WEsPt 119 (281)
T d1j5wa_ 46 GPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQEL---YLESLEYL-GINLKEHDIRFVEDN--WESPT 119 (281)
T ss_dssp SCEEEEEEEEEECCC-----CCTTCCSEEEEEEEEEESCCSSHHHH---HHHHHHHT-TCCTTTSCEEEEEEC--CEEGG
T ss_pred CCccccccccccCCccccccCCcchhhhhhheeeeecCCcccHHHH---HHHHHHHc-CCCccccceEEEecc--CcCCc
Confidence 6888888888888862 2455556678887776555555443 23334666 861 1347776543 44454
Q ss_pred eEE-----EEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHHHcCCCcccccccC
Q psy9576 262 AEI-----DIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG 329 (338)
Q Consensus 262 ~e~-----~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~~~~i~diR~~~~~ 329 (338)
.-+ .|.| +| +||-.+==.- +-.|++....++ -..-|||||||..-|++++-++-=|
T Consensus 120 lGAwGlGWEVwl-dG------MEItQFTYFQ----QvGg~~c~pv~~-EiTYGLERiaMylQ~vd~v~Dl~wn 180 (281)
T d1j5wa_ 120 LGAWGVGWEVWL-DG------MEITQFTYFQ----QIGGISLKDIPL-EITYGLERIAMYLQGVDNVYEVQWN 180 (281)
T ss_dssp GTEEEEEEEEEE-TT------EEEEEEEEEE----EBTTBCCSSCCE-EEEEEHHHHHHHHHTCSSGGGCEEE
T ss_pred ccceeeeeEEEE-cC------eeeeeeehhh----hhcCccccccch-hhhhhHHHHHHHHhCcchheeeecc
Confidence 322 2333 11 2333221111 123454432332 4456999999999999999876433
No 30
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=31.79 E-value=14 Score=27.18 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHhcCCCHHHHHHHHHHhcCCc
Q psy9576 12 KIDFSTAVSISSLENAKSYYLGKN 35 (338)
Q Consensus 12 ~~~i~~~~~~~~l~~~~~~~lGkk 35 (338)
.+.+-++++.+||+.+|..|+.||
T Consensus 43 Das~Vs~Sd~~ELe~Vk~nfl~KK 66 (113)
T d2pyqa1 43 DASTVAGSDTAELETIKKNFLMKK 66 (113)
T ss_dssp HHHBCCTTCHHHHHHHHHHTTTTT
T ss_pred ccchhccCCHHHHHHHHHhHHHHH
Confidence 445667899999999999999877
No 31
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=31.49 E-value=4.6 Score=31.51 Aligned_cols=38 Identities=39% Similarity=0.405 Sum_probs=26.1
Q ss_pred cCCcchHHHHHHHhcCCChhHhhhhchhhHHHHHHHHHHH
Q psy9576 32 LGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKEL 71 (338)
Q Consensus 32 lGkkg~l~~l~~~l~~l~~eer~~~G~~~n~~k~~~~~~~ 71 (338)
+|++|...-+ .|.+|+++|+..+-+.+.++|+.|+...
T Consensus 126 ig~~Gi~~v~--~l~~L~~~E~~~l~~s~~~lk~~I~~g~ 163 (169)
T d1mlda2 126 LGKKGIEKNL--GIGKISPFEEKMIAEAIPELKASIKKGE 163 (169)
T ss_dssp EETTEEEEEC--CCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCccEEEe--cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566633211 3446899999999889898888776543
No 32
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=29.52 E-value=11 Score=25.52 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=14.5
Q ss_pred CCCCeeEeeeeecCHHHhh
Q psy9576 274 KGNWLEISGAGQVNPKVLC 292 (338)
Q Consensus 274 ~~gwieig~~G~vhP~Vl~ 292 (338)
.+|-.-|+|+|++|=+|+.
T Consensus 42 et~e~vl~g~GelHLei~~ 60 (77)
T d2dy1a4 42 ETGELLLWGHGELHLATAK 60 (77)
T ss_dssp TTCCEEEEESSHHHHHHHH
T ss_pred CchhheEeccccchHHHHH
Confidence 3556689999999987643
No 33
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=28.03 E-value=71 Score=26.71 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHhccCCCeeEEEccCCCC--CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHH
Q psy9576 237 IRVFFESDNIQIRFRPSYFP--FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLT 314 (338)
Q Consensus 237 l~~lfg~~~~~~r~~ps~fp--f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerla 314 (338)
+..+ |. ..+.+.++... -.+-|.-..+++.+|. .-.|++-|.-+ ..+..++-. ..|++.|.|++|||+
T Consensus 247 l~~~-~~--~~i~~D~~~~r~~~YYtGivFe~~~~~~~----~~~i~~GGRYD-~L~~~f~g~--~~pAvGfsl~~~~l~ 316 (327)
T d1wu7a2 247 LASY-GV--KNVRYDFSIVRGLSYYTGIVFEAYDRSGQ----FRAILGGGRYD-NLASLMSGE--SVPAVGFGMGDAVIS 316 (327)
T ss_dssp HHHT-TC--CCCEECTTCCTTTTTCSSEEEEEEETTSS----CSCSSEEEECT-THHHHHHSC--CCCEEEEEEEHHHHH
T ss_pred HHhc-CC--cceeEccccCCCCCCcCCeEEEEEecCCC----cceeeecccch-HHHHhcCCC--CCCeEEEEeeHHHHH
Confidence 3444 53 34667776332 1123555555541111 12678888887 455666422 278999999999985
Q ss_pred HH
Q psy9576 315 ML 316 (338)
Q Consensus 315 m~ 316 (338)
.+
T Consensus 317 ~~ 318 (327)
T d1wu7a2 317 LL 318 (327)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 34
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=21.71 E-value=2e+02 Score=23.53 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=38.7
Q ss_pred eeEEEccCCCC--CCCCceEEEEEeecCCCCCCCeeEeeeeecCHHHhhhCCCCCCCeEEEEEeechhHHHHH
Q psy9576 246 IQIRFRPSYFP--FTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTML 316 (338)
Q Consensus 246 ~~~r~~ps~fp--f~~Ps~e~~i~~~~g~~~~gwieig~~G~vhP~Vl~~~gi~~~~~~~~afelglerlam~ 316 (338)
..+.+.|+... -.+-|....+++. +. +.--.|++-|... ..+.++|-+ ..|.+.|.+++|||..+
T Consensus 248 ~~i~iD~~~~rg~~YYtG~vFe~~~~-~~--g~~~~i~~GGRYD-~L~~~f~~~--~~pAvGfsi~ld~l~~~ 314 (324)
T d1h4vb2 248 VPYELEPALVRGLDYYVRTAFEVHHE-EI--GAQSALGGGGRYD-GLSELLGGP--RVPGVGFAFGVERVALA 314 (324)
T ss_dssp CCEEECTTCCCCSTTCEEEEEEEEC---------CEEEEEEECT-THHHHTTCC--CCCEEEEEEEHHHHHHH
T ss_pred eEEEEccccccCCccccCeEEEEEEC-CC--CccCeeecCCccH-HHHHhcCCC--CCCeEEEEeeHHHHHHH
Confidence 45778887432 1123444455441 11 1112688889888 445777643 37899999999999754
No 35
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=20.96 E-value=93 Score=21.93 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcchHHHHHHHhcC-CChhHhhhhchhhHHHHHHHH
Q psy9576 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKN-ISINERKRYGEIINSIKINIK 68 (338)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~lGkkg~l~~l~~~l~~-l~~eer~~~G~~~n~~k~~~~ 68 (338)
+|++++.++..--..=....++...|+..-.==..+...++..+. |+++++..+=..++.+++.++
T Consensus 5 EIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~ 71 (112)
T d1u00a1 5 EIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ 71 (112)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 455555555433222223445555555542100112223344444 688888888888887777654
No 36
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=20.02 E-value=15 Score=24.86 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=15.1
Q ss_pred CCCCeeEeeeeecCHHHhh
Q psy9576 274 KGNWLEISGAGQVNPKVLC 292 (338)
Q Consensus 274 ~~gwieig~~G~vhP~Vl~ 292 (338)
.+|-+.|+|+|++|-+|+.
T Consensus 42 et~e~il~g~GelHLev~~ 60 (75)
T d2bv3a4 42 ETGSTIISGMGELSLEIIV 60 (75)
T ss_dssp SSSCEEEEBSSHHHHTTCC
T ss_pred cCCcEEEeeCCHhHHHHHH
Confidence 3566789999999988764
Done!