RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9576
(338 letters)
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 530 bits (1369), Expect = 0.0
Identities = 168/337 (49%), Positives = 226/337 (67%), Gaps = 11/337 (3%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEII 60
M+ L +L+ AK S A +++L+N + YLGK G LT + ++ + ER G +I
Sbjct: 1 MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVI 60
Query: 61 NSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIF 120
N K +++ LN + L+ L L ID++LPGR GGLHP+ RT++RIE F
Sbjct: 61 NEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFF 120
Query: 121 YSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQ 180
+GF + GPEIE D++NF ALN P +HPAR+ HDTF+ + LLRT TS +Q
Sbjct: 121 GELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF------DTTRLLRTQTSGVQ 174
Query: 181 IRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF 240
IR K +PPI++I GRVYR D D TH+PMFHQ+EGL +D NISF++LKG +F+R F
Sbjct: 175 IRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234
Query: 241 FESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK 300
FE D +QIRFRPSYFPFTEPSAE+D++ ++ G WLE+ G G V+P VL N+ +DPE
Sbjct: 235 FEED-LQIRFRPSYFPFTEPSAEVDVMGKN----GKWLEVLGCGMVHPNVLRNVGIDPEV 289
Query: 301 YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
Y GFAFG G+ERLTMLRYG+ DLR F++ ++ FLKQF
Sbjct: 290 YSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQF 326
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 503 bits (1298), Expect = 0.0
Identities = 137/350 (39%), Positives = 207/350 (59%), Gaps = 23/350 (6%)
Query: 7 LLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKIN 66
+L +A A + L+ K+ YLGK G LTQ +K + + + ER++ G+ +N+IK
Sbjct: 1 MLEEALAAIQNARDLEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAA 60
Query: 67 IKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFD 126
++ L L++ LK +L+ ++D++LPG GGLHPI + +IF ++G+
Sbjct: 61 LEAALEAREKALEEAALKEALERERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQ 120
Query: 127 ITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKP---------LLRTHTS 177
+GPE+E++F NF ALN P++HPAR M DTF++ P LLRTHTS
Sbjct: 121 AVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTS 180
Query: 178 PMQIRYSKINKPPIKVITSGRVYRID-SDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNF 236
PMQ+RY + PP +++ GRV+R + +D+TH +FHQ+EGL + + I+ + LKG
Sbjct: 181 PMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYEL 240
Query: 237 IRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNL 296
+ F D ++RF+P YFPF EP A+ + + +G G WLE+ GAG V+PKV ++
Sbjct: 241 AQALFGPD-SKVRFQPVYFPFVEPGAQFAVWWPEG---GKWLELGGAGMVHPKVFQAVDA 296
Query: 297 DPEK---------YIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
E+ GFAFG G+ERL MLRYGI D+R F+ G + FL+QF
Sbjct: 297 YRERLGLPPAYRGVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLKFLEQF 346
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 432 bits (1114), Expect = e-154
Identities = 130/291 (44%), Positives = 173/291 (59%), Gaps = 18/291 (6%)
Query: 57 GEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116
+ + + L +K L L ID+TLP R + G HP+ RT+E I
Sbjct: 4 SHHHHHHSSGLVPRGSHMGTELMEK-LNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEI 62
Query: 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHT 176
E +F +G++I DG E+E D+ NF ALN PK+HPAR M D+FYI ++ L+RTHT
Sbjct: 63 EDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI------TDEILMRTHT 116
Query: 177 SPMQIRY--SKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKNISFSDLKGVY 233
SP+Q R + + P+K+I G+VYR DS D+THS F QIEGL +DKNI SDLKG
Sbjct: 117 SPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTL 176
Query: 234 LNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKG-------NWLEISGAGQV 286
+ F +D +IR RPSYFPFTEPS E+D+ KG W+EI GAG V
Sbjct: 177 ELVAKKLFGAD-REIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMV 235
Query: 287 NPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINFLKQF 337
+P VL D +Y GFAFG G +R+ ML+YGI+D+R FY ++ FL+QF
Sbjct: 236 HPNVLEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDIRYFYTNDVRFLEQF 286
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 363 bits (932), Expect = e-123
Identities = 94/371 (25%), Positives = 156/371 (42%), Gaps = 56/371 (15%)
Query: 8 LIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINI 67
+Q ++ L + L K L + +K +++ + I+ + +
Sbjct: 135 EVQRRLQLVRGGQAEKLGEKERSELRKRKLLAE--VTLKTYWVSKGSAFSTSISKQETEL 192
Query: 68 KKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGF-D 126
E+ I + + K + G + G LHP+++ + +IF +GF +
Sbjct: 193 SPEM-ISSGSWRDRPFK------PYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFTE 245
Query: 127 ITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKP---------------- 170
+ IE+ F NF AL P+ HPAR HDTF++++ + P
Sbjct: 246 MPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGY 305
Query: 171 -----------------LLRTHTSPMQIRY-----SKINKPPIKVITSGRVYRIDS-DST 207
LLRTHT+ R K P+K + RV+R ++ D+T
Sbjct: 306 GSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDAT 365
Query: 208 HSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIV 267
H FHQIEG+ D ++ L GV F + +RF+P+Y P+TEPS E+
Sbjct: 366 HLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQ---LRFKPAYNPYTEPSMEVFSY 422
Query: 268 FQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFY 327
W+E+ +G P++L M L PE A+G LER TM++YGI+++R
Sbjct: 423 ---HQGLKKWVEVGNSGVFRPEMLLPMGL-PENVSVIAWGLSLERPTMIKYGINNIRELV 478
Query: 328 KGNINFLKQFT 338
+N +
Sbjct: 479 GHKVNLQMVYD 489
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 358 bits (919), Expect = e-119
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 352 bits (904), Expect = e-117
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 347 bits (891), Expect = e-115
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 337 bits (866), Expect = e-113
Identities = 62/376 (16%), Positives = 132/376 (35%), Gaps = 54/376 (14%)
Query: 3 ELKKLLIQAKIDF----------STAVSISSLENAKSYYLGKNGKLTQYIKNIKNISINE 52
+ +K A+ DF S + L + GK L I+ ++ +
Sbjct: 4 DPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYL-- 61
Query: 53 RKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKG-------- 104
+ E++N + I +++++ + ++ L TLP
Sbjct: 62 SIGFSEVVNPL---IVEDVHVKKQFGREALAV--LDRCFYLATLPKPNVGISAEKIRQIE 116
Query: 105 GLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRY 164
+ + +++IF+ DG ++ + L+ + + + F
Sbjct: 117 AITKREVDSKPLQEIFHRYKKGEIDGDDLS--YLIAEVLDVDDITAVKILDEVFPEFKEL 174
Query: 165 VS-NNKPLLRTHTSPMQIRY----SKINKPPIKVITSGRVYRIDS--DSTHSPMFHQIEG 217
++ LR+H + + PIK+ + R +R + D+T +
Sbjct: 175 KPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASC 234
Query: 218 LWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGN- 276
+ +D+ +S D K V +R F + + R + P + ++ L G+
Sbjct: 235 VLVDEELSVDDGKAVAEALLRQFGFEN-FRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSS 293
Query: 277 ------WLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKG- 329
W+EI+ G +P L ++ Y G G+ERL M+ YG DD+R
Sbjct: 294 TKYSDGWIEIATFGIYSPTALAEYDIP---YPVMNLGLGVERLAMILYGYDDVRKMVYPQ 350
Query: 330 --------NINFLKQF 337
+++ ++
Sbjct: 351 IHGEIKLSDLDIAREI 366
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 340 bits (873), Expect = e-113
Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 29/351 (8%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNISIN--ERKRYGE 58
E K L+ KI+ S GK + I+N++ + +
Sbjct: 38 WIETKDLIKAKKINESYP--------RIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINP 89
Query: 59 IINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERIEK 118
+I + K+ +L + L + ++ + + + E ++K
Sbjct: 90 VIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQK 149
Query: 119 IFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS-NNKPLLRTHTS 177
I + DG ++ + +N AL + + D F + ++K LR+H +
Sbjct: 150 ILHGYKKGTLDGDDLVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMT 207
Query: 178 P---MQIRYSKINKP-PIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDLKG 231
+ + KP P K+ + R +R + D +H +H + + +D K
Sbjct: 208 SGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKA 267
Query: 232 VYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVL 291
+ + F ++ + + P + ++ + P WLE++ G +P L
Sbjct: 268 IAEGLLSQFGFTN-FKFIPDEKKSKYYTPETQTEV-YAYHPKLKEWLEVATFGVYSPVAL 325
Query: 292 CNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLR-----LFYKGNINFLKQF 337
+D G G+ERL M+ D+R FY+ +N
Sbjct: 326 SKYGIDVPVM---NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVA 373
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 304 bits (781), Expect = e-102
Identities = 89/307 (28%), Positives = 130/307 (42%), Gaps = 63/307 (20%)
Query: 78 LKKKQLKVSLKTN--KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIG--------FDI 127
L K +N + +T GR + HP+ ER+++ FY F +
Sbjct: 17 LLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSV 76
Query: 128 TDG-PEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKI 186
D + T + NF +L P +HP+R D +Y+ N +LR HTS Q
Sbjct: 77 YDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL------NRTHMLRAHTSAHQWDLLHA 130
Query: 187 NKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWIDKN---------------------- 223
V+ G VYR D DS H P+FHQ+E + +
Sbjct: 131 GLDAFLVV--GDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRS 188
Query: 224 -------------ISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQD 270
+ DLK + F + ++IR+ YFPFT PS E++I F
Sbjct: 189 AHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDE-LEIRWVDCYFPFTHPSFEMEINF-- 245
Query: 271 GPLKGNWLEISGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGN 330
G WLE+ G G + +++ + IG+AFG GLERL M+ Y I D+RLF+ +
Sbjct: 246 ---HGEWLEVLGCGVMEQQLVNSAGAQD--RIGWAFGLGLERLAMILYDIPDIRLFWCED 300
Query: 331 INFLKQF 337
FLKQF
Sbjct: 301 ERFLKQF 307
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 305 bits (782), Expect = e-100
Identities = 59/353 (16%), Positives = 119/353 (33%), Gaps = 36/353 (10%)
Query: 3 ELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKNIKNI------SINERKRY 56
E + L+ ID GK + + I+ ++
Sbjct: 32 ETRALIKDKHIDNKYP--------RLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVI 83
Query: 57 GEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLERI 116
+ + K + + + L + + G+ ER+
Sbjct: 84 VDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIK---NLGIDIDEEKKERL 140
Query: 117 EKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYI-KNRYVSNNKPLLRTH 175
++ + DG ++ F ALN + + F K+ + LR+H
Sbjct: 141 REVLHLYKKGAIDGDDLV--FEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSH 198
Query: 176 TSPMQIR----YSKINKPPIKVITSGRVYRIDS--DSTHSPMFHQIEGLWIDKNISFSDL 229
+ K K P+K+ + R +R + D +H +H + + +++S D
Sbjct: 199 MTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDG 258
Query: 230 KGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPK 289
K V + F + + + + P + ++ + P G W+E++ G +P
Sbjct: 259 KVVAEGLLAQFGFTK-FKFKPDEKKSKYYTPETQTEV-YAYHPKLGEWIEVATFGVYSPI 316
Query: 290 VLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRL-----FYKGNINFLKQF 337
L N+D G G+ERL M+ YG +D+R FY+ ++
Sbjct: 317 ALAKYNIDVPVM---NLGLGVERLAMIIYGYEDVRAMVYPQFYEYRLSDRDIA 366
Score = 99.3 bits (247), Expect = 3e-23
Identities = 30/195 (15%), Positives = 69/195 (35%), Gaps = 5/195 (2%)
Query: 57 GEIINSIKINIKKELNIHRDILKK--KQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLE 114
+ + ++ +IKK L + + ++ + +K ID P G HP+M T+E
Sbjct: 5 HKRDDKMRFDIKKVLELAEKDFETAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIE 64
Query: 115 RIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRT 174
R+ + + +GF+ P I + + P+ FY+ +
Sbjct: 65 RLRQAYLRMGFEEMINPVIVDEMEIYKQFG-PEAMAVL--DRCFYLAGLPRPDVGLGNEK 121
Query: 175 HTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYL 234
+ + ++ +Y+ + +F + L + + L+ +
Sbjct: 122 VEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFP 181
Query: 235 NFIRVFFESDNIQIR 249
F + ES + +R
Sbjct: 182 EFKDLKPESTTLTLR 196
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 132 bits (334), Expect = 1e-36
Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 32/233 (13%)
Query: 107 HPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYVS 166
+ + + I + F GF P + + +
Sbjct: 77 NYLGKLEREITRFFVDRGFLEIKSPILIP-LEYIERMGIDNDTELSKQIFRV-------- 127
Query: 167 NNKPLLRTHTSPMQIRY----SKINKPPIKVITSGRVYRIDS-DSTHSPMFHQIEGLWID 221
+ LR +P Y + PIK+ G YR +S H F + +
Sbjct: 128 DKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMG 187
Query: 222 KNISFSDLKGVYLNFIRVFFESDNIQ-IRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEI 280
+ +L+ + I F I S F + + LE+
Sbjct: 188 SGCTRENLESI----ITDFLNHLGIDFKIVGDSCMVFGDTLDVM----------HGDLEL 233
Query: 281 SGAGQVNPKVLCNMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLFYKGNINF 333
S A + +D G GLERL +++ +++ + +
Sbjct: 234 SSALVGPIPLDREWGIDKP---WIGAGFGLERLLKVKHDFKNIKRAARSESYY 283
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 42.0 bits (99), Expect = 2e-04
Identities = 46/223 (20%), Positives = 78/223 (34%), Gaps = 37/223 (16%)
Query: 90 NKIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNH 149
N I +TLP + P+ + E + + GF E F L S ++
Sbjct: 375 NNIQMTLP-KTYTIANQFPLNKLTELLRHDMAAAGFT-----EA----LTFA-LCSQEDI 423
Query: 150 PARSMHDTFYIKNRYVSNNKPL------LRTHTSP---MQIRYSKINKPPIKVITSGRVY 200
+ D K ++SN P RT P I ++ P+K+ +
Sbjct: 424 ADKLGVDISATKAVHISN--PKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIV 481
Query: 201 RIDSDS-THSPMFHQIEGLWIDKNISFSDLKGV---YLNFIRVFFESDNIQIRFRPSYFP 256
DS++ + + + ++ +KN F + G+ + + V D + S P
Sbjct: 482 IKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGP 541
Query: 257 FTEP--SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLD 297
P AEI F G G L G ++P V+ L
Sbjct: 542 AFFPGRCAEI---FARGQSVG-KL-----GVLHPDVITKFELT 575
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.022
Identities = 55/308 (17%), Positives = 91/308 (29%), Gaps = 114/308 (37%)
Query: 53 RKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRT 112
+ YG I I IN L IH K K+++ + + + G+ K
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT---------- 1703
Query: 113 LERIEKIFYSIGFDITD----GPEIETDFNNFTALNSPKN-HPARSMHDTFYIKNRYVSN 167
EKIF I T + L++ + PA
Sbjct: 1704 ----EKIFKEINEHSTSYTFRSEKGL--------LSATQFTQPA---------------- 1735
Query: 168 NKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQI-E--------GL 218
L + + SK P +G HS + E +
Sbjct: 1736 ---LTLMEKAAFEDLKSKGLIPADATF-AG----------HS-----LGEYAALASLADV 1776
Query: 219 WIDKNISFSDLKGVYLNFIR-----VFFESDNIQ------IRFRPSYF--PFTEPSAEID 265
+S L V + F R V D + I P F++ + +
Sbjct: 1777 -----MSIESL--VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ-Y 1828
Query: 266 IVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKY-IGFAFG--SGLERLT-MLRY--- 318
+V + G G +EI N N++ ++Y G L+ +T +L +
Sbjct: 1829 VVERVGKRTGWLVEI-----------VNYNVENQQYVAA---GDLRALDTVTNVLNFIKL 1874
Query: 319 -GIDDLRL 325
ID + L
Sbjct: 1875 QKIDIIEL 1882
Score = 35.8 bits (82), Expect = 0.022
Identities = 52/278 (18%), Positives = 88/278 (31%), Gaps = 98/278 (35%)
Query: 106 LHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSMHDTFYIKNRYV 165
L ++RT EK ++ G +I + L +P N P D Y+ + +
Sbjct: 195 LSELIRTTLDAEK-VFTQGLNILE------------WLENPSNTP-----DKDYLLSIPI 236
Query: 166 SNNKPLLRTHTSPMQI-RYSKINKPPIKVITSGRVYRIDSDSTHSPMFHQIEGL-WIDKN 223
S PL+ +Q+ Y + + ++ T + ++G +
Sbjct: 237 S--CPLI----GVIQLAHY----------VVTAKL----LGFTPGELRSYLKGATGHSQG 276
Query: 224 I-------------SFSDLKGVYLNFIRVFF----ESDNIQIRFRPSYFPFTEPSAEIDI 266
+ SF I V F + + P PS D
Sbjct: 277 LVTAVAIAETDSWESFFVS---VRKAITVLFFIGVRC---YEAYPNTSLP---PSILEDS 327
Query: 267 VFQDG-----PLKGNWLEISGA--GQVNPKV-LCNMNLDPEKYIGFAF--G------SG- 309
+ ++ P+ L IS QV V N +L K + + G SG
Sbjct: 328 L-ENNEGVPSPM----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 310 ---LERL-TMLR-----YGIDDLRL-FYKGNINFLKQF 337
L L LR G+D R+ F + + F +F
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 33.6 bits (78), Expect = 0.084
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 15/80 (18%)
Query: 221 DKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEP--SAEIDIVFQDGPLKGNWL 278
++ + LKG + F + R FPF P S + + +G G +L
Sbjct: 601 ERLSGYFLLKGY----LEALFARLGLAFRVEAQAFPFLHPGVSGRVLV---EGEEVG-FL 652
Query: 279 EISGAGQVNPKVLCNMNLDP 298
G ++P++ + L P
Sbjct: 653 -----GALHPEIAQELELPP 667
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 33.2 bits (76), Expect = 0.13
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 18/65 (27%)
Query: 278 LEISGAGQ--VNPKVLC----NMNLDPEK---YI-GFAFGS--------GLERLTMLRYG 319
EI+ Q +P+ L +DP YI F FGS GLER+TML G
Sbjct: 470 QEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLG 529
Query: 320 IDDLR 324
I ++R
Sbjct: 530 IPNIR 534
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 32.9 bits (75), Expect = 0.15
Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 38/214 (17%)
Query: 126 DITDGPEIET--DFNNFTALNSPKNHPARSMHDTFYIKNRYVSNNKPLLRTHTSPMQIRY 183
D + E+ ++ N + F K +PL
Sbjct: 297 DYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLT--KEPLPSKA---FYGLL 351
Query: 184 SKINKPPIKVIT----SGRVYRIDSDST-----HSPMFHQIEGLWIDKNISFSDLKGVYL 234
+++K P I G++ +I SD T + +++ K +L
Sbjct: 352 ERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQS--EQKKKTEFL 409
Query: 235 NFIRVFFES--DNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWLEISGAGQVNPKVLC 292
+++ +E + R Y + + G
Sbjct: 410 DWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWG-------- 461
Query: 293 NMNLDPEKYIGFAFGSGLERLTMLRYGIDDLRLF 326
E Y F S ERL + ID +F
Sbjct: 462 ------ESY----FLSNYERLIRAKTLIDPNNVF 485
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 32.5 bits (75), Expect = 0.20
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 18/65 (27%)
Query: 278 LEISGAGQ--VNPKVLCN----MNLDPEK---YI-GFAFGS--------GLERLTMLRYG 319
+EIS GQ +L L+PE Y+ F +G G ERL
Sbjct: 360 VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLD 419
Query: 320 IDDLR 324
+ ++R
Sbjct: 420 LPNIR 424
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.33
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 8/30 (26%)
Query: 2 NELKKLLIQAKI-----DFSTAVSI-SSLE 25
LKKL QA + D + A++I +++E
Sbjct: 20 QALKKL--QASLKLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 7.1
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 18/47 (38%)
Query: 68 KKELNIHRDILKKKQLKVSLKTNKIDITLPGRGKNKGGLHPIMRTLE 114
K+ L K+L+ SLK D + P L I T+E
Sbjct: 19 KQAL---------KKLQASLKLYADD-SAP-------AL-AIKATME 47
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 31.5 bits (72), Expect = 0.39
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 20/67 (29%)
Query: 278 LEISGAGQ--VNPKVLC----NMNLDPEK-----YI-GFAFGS--------GLERLTMLR 317
EI Q + +L L PE Y GF++G GLER+ M
Sbjct: 407 EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFY 466
Query: 318 YGIDDLR 324
+ ++R
Sbjct: 467 LDLKNIR 473
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 31.4 bits (72), Expect = 0.39
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Query: 278 LEISGAGQ--VNPKVLCN----MNLDPEKYI----GFAFGS--------GLERLTMLRYG 319
LEI+ GQ + L +DPE + F +G G ERLT G
Sbjct: 344 LEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLG 403
Query: 320 IDDLR 324
+ ++R
Sbjct: 404 LPNVR 408
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 31.0 bits (71), Expect = 0.55
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 18/65 (27%)
Query: 278 LEISGAGQ--VNPKVLC----NMNLDPEKYI----GFAFGS--------GLERLTMLRYG 319
LEI +VL L PE + F +G GL RL ++ G
Sbjct: 351 LEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTG 410
Query: 320 IDDLR 324
I ++
Sbjct: 411 IQSVK 415
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural
genomics, joint center for structu genomics, JCSG; HET:
MSE PG4; 1.95A {Archaeoglobus fulgidus}
Length = 126
Score = 28.5 bits (63), Expect = 1.4
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 11/75 (14%)
Query: 200 YRIDSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVF-----------FESDNIQI 248
Y + + MFH + + + +G S +
Sbjct: 28 YERCCSTAYYAMFHAAKAMLLGYGRDSKTHRGTIYLIWECREELGLSDDDCSKLSRAFDL 87
Query: 249 RFRPSYFPFTEPSAE 263
R Y + E S +
Sbjct: 88 REESDYGIYKEVSKD 102
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2;
signaling protein, NPY motif, binding pocket; 2.11A
{Homo sapiens} PDB: 1y2o_A 1wdz_A
Length = 253
Score = 29.1 bits (64), Expect = 1.7
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 1 MNELKKLLIQAKIDFSTAVSISSLENAKSYYLGKNGKLTQYIKN-IKNISINERKRYGEI 59
ELKKL +++ + K G+L Y+ + K ER+R+ +
Sbjct: 141 QAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFL 200
Query: 60 INSIKINIKKELNIHRDILKKKQLKVSL 87
+ K H + K+ L
Sbjct: 201 VEKQCAVAKNSAAYHSKGKELLAQKLPL 228
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 28.3 bits (64), Expect = 3.3
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 19/67 (28%)
Query: 277 WLEISGAGQ--VNPKVLCN----MNLDPEKYI--------GFA-----FGSGLERLTMLR 317
+ E++ G+ + + L+ + + G G G+ERL
Sbjct: 213 YGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFI 272
Query: 318 YGIDDLR 324
G +
Sbjct: 273 VGAKHIA 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 3.7
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 30/106 (28%)
Query: 1 MNELKKLL-----IQAKIDFST------AVSISSLENAKSY--YLGKN-GKLTQYIKNIK 46
M + + ++ KI + +++L+ K Y Y+ N K + + I
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 47 NISINERKRYGEIINSIKINIKKELNIHRDILKKKQLKVSLKTNKI 92
+ + E + K + D+L ++ + + I
Sbjct: 550 DFL----PKIEENLICSK---------YTDLL---RIALMAEDEAI 579
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 27.8 bits (63), Expect = 6.0
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 25/120 (20%)
Query: 197 GRVYRIDSDSTHSPMFHQIEGLWI------------DKNISFSDLKGVYLNFIRVFFESD 244
G + D+ + + I + + F DLKG + + + + +
Sbjct: 573 GLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLN 632
Query: 245 NIQIRFRPSYFPFTEP--SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEKYI 302
++ FR P P SA I + G G ++ G V+P++ ++L+ +
Sbjct: 633 EVE--FRAEANPALHPGQSAAIYL---KGERIG-FV-----GVVHPELERKLDLNGRTLV 681
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.405
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,253,387
Number of extensions: 325105
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 49
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.7 bits)