RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9576
(338 letters)
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 265 bits (677), Expect = 1e-88
Identities = 111/266 (41%), Positives = 160/266 (60%), Gaps = 23/266 (8%)
Query: 91 KIDITLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHP 150
++D++LPG GGLHPI + +IF ++G+ +GPE+E++F NF ALN P++HP
Sbjct: 1 RVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHP 60
Query: 151 ARSMHDTFYIKNRYVSNNKP---------LLRTHTSPMQIRYSKINKPPIKVITSGRVYR 201
AR M DTF++ P LLRTHTSPMQ+RY + PP +++ GRV+R
Sbjct: 61 ARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFR 120
Query: 202 I-DSDSTHSPMFHQIEGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEP 260
+D+TH +FHQ+EGL + + I+ + LKG + F D ++RF+P YFPF EP
Sbjct: 121 FEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGPD-SKVRFQPVYFPFVEP 179
Query: 261 SAEIDIVFQDGPLKGNWLEISGAGQVNPKVLCNMNLDPEK---------YIGFAFGSGLE 311
A+ + + +G WLE+ GAG V+PKV ++ E+ GFAFG G+E
Sbjct: 180 GAQFAVWWPEGG---KWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTGFAFGLGVE 236
Query: 312 RLTMLRYGIDDLRLFYKGNINFLKQF 337
RL MLRYGI D+R F+ G + FL+QF
Sbjct: 237 RLAMLRYGIPDIRYFFGGRLKFLEQF 262
>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS)
{Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 62.8 bits (153), Expect = 2e-13
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 21 ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELNIHRDILKK 80
+ L+ K+ YLGK G LTQ +K + + + ER++ G+ +N+IK ++ L L++
Sbjct: 1 LEELKALKARYLGKKGLLTQEMKGLSALPLEERRKRGQELNAIKAALEAALEAREKALEE 60
Query: 81 KQLKVSLK 88
LK +L+
Sbjct: 61 AALKEALE 68
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
subunit, PheT, central domain {Thermus thermophilus
[TaxId: 274]}
Length = 207
Score = 28.7 bits (63), Expect = 0.74
Identities = 29/211 (13%), Positives = 64/211 (30%), Gaps = 29/211 (13%)
Query: 95 TLPGRGKNKGGLHPIMRTLERIEKIFYSIGFDITDGPEIETDFNNFTALNSPKNHPARSM 154
P N+G P R +R+ ++ +GF + ++ ++ R
Sbjct: 5 FFP-APDNRGVEAPY-RKEQRLREVLSGLGF---------QEVYTYSFMDPEDARRFRLD 53
Query: 155 HDTFYIKNRYVSNNKPLLRTHTS----PMQIRYSKINKPPIKVITSGRVYRIDSDSTHSP 210
+ N L ++ + GRV+R ++ +
Sbjct: 54 PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAG 113
Query: 211 MFHQI---EGLWIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIV 267
+ ++ + LKG ++ F + R FPF P ++
Sbjct: 114 LLFGEGVGLPWAKERLSGYFLLKG----YLEALFARLGLAFRVEAQAFPFLHPGVSGRVL 169
Query: 268 FQDGPLKGNWLEISGAGQVNPKVLCNMNLDP 298
+ E+ G ++P++ + L P
Sbjct: 170 VEGE-------EVGFLGALHPEIAQELELPP 193
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 28.6 bits (63), Expect = 1.1
Identities = 10/119 (8%), Positives = 32/119 (26%), Gaps = 15/119 (12%)
Query: 219 WIDKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDGPLKGNWL 278
+ + F + F+ + + + + ++ + + G +
Sbjct: 162 YSEVLEEFGSDEKASQEMEEPFWIINIPREFYDR-EVDGFWRNYDLILPYGYGEVASGGE 220
Query: 279 EISGAGQVNPKVLCNMNLDPEKYIGF-------------AFGSGLERLTMLRYGIDDLR 324
++ + L+ + + + G G+ERL G +
Sbjct: 221 REWEYEKIV-AKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIA 278
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 26.7 bits (58), Expect = 4.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 294 MNLDPEKYIGF------------AFGSGLERLTMLRYGIDDLR 324
+DPE + G+ F G ERLT G+ ++R
Sbjct: 256 KGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVR 298
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 26.7 bits (58), Expect = 4.4
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 303 GFAFGSGLERLTMLRYGIDDLR 324
G G ++R+ ML +R
Sbjct: 313 GLGIG--IDRMIMLFTNSHTIR 332
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 26.0 bits (56), Expect = 6.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 306 FGSGLERLTMLRYGIDDLR 324
G GLER+ M + ++R
Sbjct: 321 GGIGLERVVMFYLDLKNIR 339
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 26.3 bits (57), Expect = 6.8
Identities = 28/189 (14%), Positives = 55/189 (29%), Gaps = 21/189 (11%)
Query: 153 SMHDTFYIKNRYVSNNKPLLRTHTSPMQIRYSKINKPPIKVITSGRVYRIDSDSTHSPMF 212
+ +F + N+ L+ + P + + Y D
Sbjct: 135 DLEMSFVEVEDVLELNERLMAHVFREALGVELPLPFPRLSYEEAMERYGSDKPDLRR--- 191
Query: 213 HQIEGLWI-DKNISFSDLKGVYLNFIRVFFESDNIQIRFRPSYFPFTEPSAEIDIVFQDG 271
LW+ D + D + ++ F S + + P + D+V
Sbjct: 192 EGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV 251
Query: 272 PLKGNWLEISGAGQVNPKVLCNMNLDP----EKYIGFA------------FGSGLERLTM 315
+ G + I ++ +V + + EK+ F GL+RL
Sbjct: 252 EVGGGSIRI-HDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLA 310
Query: 316 LRYGIDDLR 324
L G +R
Sbjct: 311 LMTGSPSIR 319
>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus
aureus [TaxId: 1280]}
Length = 171
Score = 25.7 bits (56), Expect = 7.2
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 21 ISSLENAKSYYLGKNGKLTQYIKNIKNISINERKRYGEIINSIKINIKKELN 72
I+ L + K +Y ++GK ++ +K + + E ++ +K+EL
Sbjct: 116 ITVLTDEKGFYFEEDGK----VRLVKATPLANNIKEKESAKTVSPQLKQELK 163
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 26.3 bits (57), Expect = 7.4
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 38 LTQYIKNIKNISIN--ERKRYGEIINSIKINIKKELNIHRDILKKKQLKV 85
L +I +I+N E KR + + +I+ K + + KK K+
Sbjct: 5 LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKL 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.405
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,323,373
Number of extensions: 68106
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 21
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)