BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9577
(354 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|409406680|ref|ZP_11255142.1| Fe-S-cluster redox enzyme protein [Herbaspirillum sp. GW103]
gi|386435229|gb|EIJ48054.1| Fe-S-cluster redox enzyme protein [Herbaspirillum sp. GW103]
Length = 390
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 229/354 (64%), Positives = 289/354 (81%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLD+ P + V YC ELGE PFRAKQLQ+WIH+FGVSDF++MTDL+ SLR KLK
Sbjct: 5 LTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVSDFDQMTDLAKSLRDKLKTRAE 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
++AP I+SD S DGTRKW+ V + N +ETVFIPE+NR TLC+STQ GCA+NC FCSTG
Sbjct: 65 VRAPAIISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTG 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTV EIIGQLW+ EF+LR+ K I+ +G+RQITN+VMMGMGEPLLN+ T+
Sbjct: 125 KQGFNRNLTVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFDPTVT 184
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D+AYGLSRR V LSTSG++PMIDKL+QECPV LAVSLHASN+ LR+ L+P+++
Sbjct: 185 ALRLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPLNR 244
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+LAC RY+ ++PR ITFEYCML G+NDTD HA EL++L+++ + CK NL
Sbjct: 245 KHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNL 304
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N RIK FA+ILM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 305 IPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEV 358
>gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
IMCC9480]
gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium
IMCC9480]
Length = 388
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 229/354 (64%), Positives = 284/354 (80%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLDL P + V YC ELGE PFRAKQLQ+WIH+FG SDF MTDL+ SLR KL
Sbjct: 3 LTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQFGASDFTAMTDLAKSLRDKLATRAV 62
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
+++P ++SD S DGTRKW+ V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 63 VQSPAVISDHTSTDGTRKWLLDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 122
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTVGEIIGQLW+ EF+LR+ K I+ +G+RQITN+VMMGMGEPLLNY+ T+
Sbjct: 123 KQGFNRNLTVGEIIGQLWMAEFELRKTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVT 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++P IDKL Q+CPV LAVSLHASN+ LR+ LVP++K
Sbjct: 183 ALKLMLDDNAYGLSRRRVTLSTSGVVPNIDKLGQDCPVALAVSLHASNDALRDSLVPLNK 242
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPLKEL+ AC RY+ ++PR +TFEYCML G+NDT+ HA EL++L+R L CK NL
Sbjct: 243 KYPLKELMAACVRYLEFAPRDFVTFEYCMLDGVNDTEQHARELVALVRHGAQLVPCKFNL 302
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +IK+FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 303 IPFNPFPESGLTRSNNPQIKLFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 356
>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1]
Length = 390
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 226/354 (63%), Positives = 289/354 (81%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLD+ P + V YC ELGE PFRAKQLQ+WIH+FGV+DF++MTDL+ SLR KLK
Sbjct: 5 LTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAE 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
++AP I+SD S DGTRKW+ V + N +ETVFIPE+NR TLC+STQ GCA+NC FCSTG
Sbjct: 65 VRAPAIISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTG 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+V EIIGQLW+ EF+LR+ K I+ +G+RQITN+VMMGMGEPLLN++ T+
Sbjct: 125 KQGFNRNLSVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVT 184
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D+AYGLSRR V LSTSG++PMI KL+QECPV LAVSLHASN+ LR+ L+P+++
Sbjct: 185 ALRLMLDDNAYGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLIPLNR 244
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+LAC RY+ ++PR ITFEYCML G+NDTD HA EL++L+++ + CK NL
Sbjct: 245 KHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNL 304
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N RIK FA+ILM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 305 IPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEV 358
>gi|398836190|ref|ZP_10593536.1| 23S rRNA methyltransferase [Herbaspirillum sp. YR522]
gi|398213194|gb|EJM99788.1| 23S rRNA methyltransferase [Herbaspirillum sp. YR522]
Length = 390
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 225/354 (63%), Positives = 286/354 (80%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLD+ P + V YC ELGE PFRAKQLQ+WIH+FGV DF++MTDL+ SLR KLK
Sbjct: 5 LTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVGDFDQMTDLAKSLRDKLKTRAE 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
++AP I+SD S DGTRKW+ V + N +E VFIPE+NR TLC+STQ GCA+NC FCSTG
Sbjct: 65 VRAPAIISDHTSADGTRKWLVDVGQGNAVEAVFIPEENRGTLCVSTQAGCAVNCRFCSTG 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTV EIIGQLW+ EF+LRR K ++ +G+RQITN+VMMGMGEPLLN++ T+
Sbjct: 125 KQGFNRNLTVAEIIGQLWMAEFELRRTKGVEPGPKGERQITNVVMMGMGEPLLNFEPTVT 184
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D+AYGLSRR V LSTSG++PMID+L+QECPV LAVSLHASN+ LR+ L+P+++
Sbjct: 185 ALRLMLDDNAYGLSRRRVTLSTSGVVPMIDRLSQECPVALAVSLHASNDALRDSLIPLNR 244
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ ++PR ITFEYCML G+ND+D++A ELI L+ + SCK NL
Sbjct: 245 KHPLRELMAACKRYLEFAPRDFITFEYCMLDGVNDSDVNARELIELVTQGDTAISCKFNL 304
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N RIK FA+ILM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 305 IPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEV 358
>gi|395763293|ref|ZP_10443962.1| hypothetical protein JPAM2_16292 [Janthinobacterium lividum PAMC
25724]
Length = 391
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 227/354 (64%), Positives = 284/354 (80%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLD P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KL
Sbjct: 6 LTNLLDFDPAQLIAYCAELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATRAE 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
++AP I+SD S DGTRKW+ V N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 66 VRAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+VGEIIGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLN++ T+
Sbjct: 126 KQGFNRNLSVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNFEPTVT 185
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++PM+DKL+QE PV LAVSLHASN+ LR+ L+P++K
Sbjct: 186 ALKLMLDDNAYGLSRRRVTLSTSGVVPMMDKLSQEVPVALAVSLHASNDVLRDGLIPLNK 245
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPLKEL+ AC RY+ ++PR ITFEYCML G+ND+D HA EL++L++ + +CK NL
Sbjct: 246 KYPLKELMAACKRYLEFAPRDFITFEYCMLDGVNDSDEHARELLALVQDREFGVNCKFNL 305
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L SKN RIK FA++LM+ GI T+RK RG+DI+AACGQL+G++
Sbjct: 306 IPFNPFPESGLFRSKNPRIKAFAQVLMDGGIITTVRKTRGDDIDAACGQLAGEV 359
>gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille]
gi|205829777|sp|A6SZX3.1|RLMN_JANMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 387
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 228/354 (64%), Positives = 284/354 (80%), Gaps = 3/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLDL P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KL
Sbjct: 4 LTNLLDLDPAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATRAI 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP ++SD S DGTRKW+ V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 64 IAAPAVISDHTSADGTRKWLVDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+VGE+IGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLNY+ T+
Sbjct: 124 KQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVT 183
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++PMIDKL+Q+C V LAVSLHASN+ LR+ LVP++K
Sbjct: 184 ALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNK 243
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR +TFEYCML G+ND+D HA ELI+L+R+ + CK NL
Sbjct: 244 KYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVRQADV--PCKFNL 301
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N RIK FA++LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 302 IPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQLAGEV 355
>gi|445498333|ref|ZP_21465188.1| ribosomal RNA large subunit methyltransferase N [Janthinobacterium
sp. HH01]
gi|444788328|gb|ELX09876.1| ribosomal RNA large subunit methyltransferase N [Janthinobacterium
sp. HH01]
Length = 399
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 228/354 (64%), Positives = 285/354 (80%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLD P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KLK +
Sbjct: 14 LTNLLDFDPAQLIAYCAELGEKPFRAKQLQRWIHQFGASDFDSMTDLAKSLRDKLKTRAH 73
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
+ AP I+SD S DGTRKW+ V N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 74 VTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 133
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+VGEIIGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLN++ T
Sbjct: 134 KQGFSRNLSVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNFEPTAT 193
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++PM+DKL+QE PV LAVSLHASN+ LR+ L+P++K
Sbjct: 194 ALKLMLDDNAYGLSRRRVTLSTSGVVPMMDKLSQEVPVALAVSLHASNDKLRDSLIPLNK 253
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPLKEL+ AC RY+ ++PR ITFEYCML G+ND+D +A EL++L++ + +CK NL
Sbjct: 254 KYPLKELMAACKRYLEFAPRDFITFEYCMLDGVNDSDENARELLALVQDREFGVNCKFNL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ SKN RIK FA+IL++ GI TIRK RG+DI+AACGQL+G++
Sbjct: 314 IPFNPFPESGLLRSKNPRIKAFAQILVDGGIVTTIRKTRGDDIDAACGQLAGEV 367
>gi|399018040|ref|ZP_10720226.1| 23S rRNA methyltransferase [Herbaspirillum sp. CF444]
gi|398102005|gb|EJL92197.1| 23S rRNA methyltransferase [Herbaspirillum sp. CF444]
Length = 393
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 227/357 (63%), Positives = 286/357 (80%), Gaps = 4/357 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLDL P + V YC ELGE PFRAKQLQ+WIH++GV+DF +MTDL+ SLR+KL +
Sbjct: 5 LTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTRAF 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
+ AP I+SD S DGTRKW+ V N +ETVFIPE+ R TLCISTQ GCA+NC FCSTG
Sbjct: 65 VAAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEETRGTLCISTQAGCAVNCRFCSTG 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+VGEIIGQLW+ EF+LR+ K I+ +G+RQITN+VMMGMGEPLLN++ T+
Sbjct: 125 KQGFNRNLSVGEIIGQLWMAEFELRKTKGIEAGPKGERQITNVVMMGMGEPLLNFEPTVT 184
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++PMIDKL+QECPV LAVSLHASN+ LR+ L+P++K
Sbjct: 185 ALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECPVALAVSLHASNDTLRDGLIPLNK 244
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR---KNKILTSCK 296
KYPL+EL+ AC RY+ ++PR +TFEYCML G+ND+D HA EL++L++ K CK
Sbjct: 245 KYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVALVQGGGDGKAAVPCK 304
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S N RIK FA+ILM++G+ TIRK RG+DI+AACGQL+G++
Sbjct: 305 FNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGLVTTIRKTRGDDIDAACGQLAGEV 361
>gi|427401446|ref|ZP_18892518.1| ribosomal RNA large subunit methyltransferase N [Massilia timonae
CCUG 45783]
gi|425719555|gb|EKU82487.1| ribosomal RNA large subunit methyltransferase N [Massilia timonae
CCUG 45783]
Length = 389
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 227/354 (64%), Positives = 285/354 (80%), Gaps = 1/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLD P + V YC +LGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR+KLK+
Sbjct: 4 LTNLLDFDPAQLVAYCADLGEKPFRAKQLQRWIHQFGASDFDSMTDLAKSLREKLKSRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
++AP I+SD+ + DGTRKW+ V N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 64 VRAPAIVSDKTASDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTV EIIGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLNY+ T+
Sbjct: 124 KQGFNRNLTVAEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVT 183
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALK++L D+AYGLSRR V LSTSG++P IDKL+Q+ PV +AVSLHASN+ LR+ LVP++K
Sbjct: 184 ALKMMLDDNAYGLSRRRVTLSTSGVVPNIDKLSQDVPVAMAVSLHASNDALRDILVPLNK 243
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ ++PR ITFEYCML G ND+D HA ELI+L+ + +CK NL
Sbjct: 244 KYPLRELMAACKRYLEFAPRDFITFEYCMLDGFNDSDEHARELIALVNDPVVGVNCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L SKN RIK FA++LMN+GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 IPFNPFPESGLTRSKNPRIKAFAEVLMNAGIVTTVRKTRGDDIDAACGQLAGEV 357
>gi|415904117|ref|ZP_11552301.1| Putative Fe-S-cluster redox enzyme [Herbaspirillum frisingense
GSF30]
gi|407763612|gb|EKF72252.1| Putative Fe-S-cluster redox enzyme [Herbaspirillum frisingense
GSF30]
Length = 380
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 224/348 (64%), Positives = 284/348 (81%), Gaps = 1/348 (0%)
Query: 7 LSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHI 66
+ P + V YC ELGE PFRAKQLQ+WIH+FGVSDF++MTDL+ SLR KLK ++AP I
Sbjct: 1 MDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVSDFDQMTDLAKSLRDKLKTRAEVRAPAI 60
Query: 67 MSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVR 125
+SD S DGTRKW+ V + N +ETVFIPE+NR TLC+STQ GCA+NC FCSTG+QGF R
Sbjct: 61 ISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNR 120
Query: 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLIL 185
NLTV EIIGQLW+ EF+LR+ K I+ +G+RQITN+VMMGMGEPLLN++ T+ AL+L+L
Sbjct: 121 NLTVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLML 180
Query: 186 SDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKE 245
D+AYGLSRR V LSTSG++PMIDKL+QECPV LAVSLHASN+ LR+ L+P+++K+PL+E
Sbjct: 181 DDNAYGLSRRRVTLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRE 240
Query: 246 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF 305
L+LAC RY+ ++PR ITFEYCML G+NDTD HA EL++L+++ + CK NLIPFN F
Sbjct: 241 LMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPF 300
Query: 306 PNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
P S L S N RIK FA+ILM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 301 PESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEV 348
>gi|340787103|ref|YP_004752568.1| ribosomal RNA large subunit methyltransferase N [Collimonas
fungivorans Ter331]
gi|340552370|gb|AEK61745.1| Ribosomal RNA large subunit methyltransferase N [Collimonas
fungivorans Ter331]
Length = 391
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 227/356 (63%), Positives = 281/356 (78%), Gaps = 3/356 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLDL P + YC ELGE PFRAKQL +WIH+FG DF+ MTDL+ SLR KL
Sbjct: 4 LTNLLDLDPAQLTAYCGELGEKPFRAKQLLRWIHQFGAHDFDAMTDLAKSLRDKLATRAM 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP ++SD S DGTRKW+ V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 64 IAAPAVISDHTSTDGTRKWLLDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTVGEIIGQLW+ EF+LR+ K I+ +G+RQITN+VMMGMGEPLLNY+ T+
Sbjct: 124 KQGFSRNLTVGEIIGQLWMAEFELRKSKGIEPGHKGERQITNVVMMGMGEPLLNYEPTVT 183
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++PMIDKL+Q+C V +AVSLHASN+ LR+ LVP++K
Sbjct: 184 ALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVAMAVSLHASNDTLRDGLVPLNK 243
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK--ILTSCKI 297
KYPL++L+ AC RY+ ++PR ITFEYCML G+NDTD HA ELI+L++ + CK
Sbjct: 244 KYPLRDLMAACKRYLEFAPRDFITFEYCMLDGVNDTDAHARELIALVQGHAGGPAVPCKF 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S N RIK FA+ILM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 NLIPFNPFPESGLKRSNNPRIKAFAQILMDAGIVTTVRKTRGDDIDAACGQLAGEV 359
>gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [Herminiimonas arsenicoxydans]
gi|205829776|sp|A4G4J9.1|RLMN_HERAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|133738391|emb|CAL61436.1| putative Fe-S-cluster redox enzyme [Herminiimonas arsenicoxydans]
Length = 386
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 223/346 (64%), Positives = 276/346 (79%), Gaps = 5/346 (1%)
Query: 9 PLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMS 68
P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KLK I AP ++S
Sbjct: 13 PAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVIS 72
Query: 69 DQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNL 127
D S DGTRKW+ V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG+QGF RNL
Sbjct: 73 DHTSSDGTRKWLIDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132
Query: 128 TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSD 187
+VGEIIGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLNY+ T+ ALKL+L D
Sbjct: 133 SVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDD 192
Query: 188 HAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 247
+AYGLSRR V LSTSG++PMIDKL+Q+C V LAVSLHASN+ LR+ LVP++KKYPL+EL+
Sbjct: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELM 252
Query: 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307
AC RY+ ++PR +TFEYCML G+ND+D HA EL++L+R CK NLIPFN FP
Sbjct: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRD----VPCKFNLIPFNPFPE 308
Query: 308 SNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S L S N RIK FA++LM+ G+ TIRK RG+DI+AACGQL+G++
Sbjct: 309 SGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEV 354
>gi|237747707|ref|ZP_04578187.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
formigenes OXCC13]
gi|229379069|gb|EEO29160.1| ribosomal RNA large subunit methyltransferase N [Oxalobacter
formigenes OXCC13]
Length = 387
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 216/353 (61%), Positives = 275/353 (77%), Gaps = 2/353 (0%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL SP++ V YC++L E PFRAKQLQ+WIH+FGVSDF +MTDL+ SLR KL+ +
Sbjct: 6 TNLLGFSPVQLVEYCQKLNEKPFRAKQLQRWIHQFGVSDFAEMTDLAKSLRGKLELCAEV 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP I+ D +S DGTRKW+ V N IETVFIPE R TLC+STQ GCA+NC+FCSTG+
Sbjct: 66 KAPDILKDTVSSDGTRKWLLDVGAGNAIETVFIPEDTRGTLCVSTQAGCAVNCLFCSTGK 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW+ EF +RR K + +++ +RQI+N+VMMGMGEPL N+ +++ A
Sbjct: 126 QGFSRNLTTAEIIGQLWMAEFAVRRSKGL-TDAKDERQISNVVMMGMGEPLFNFDASVSA 184
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LKL+L D+AYGLSRR V +STSG++PMID+LA+ECPV LAVSLHA N+ LR+ LVP++KK
Sbjct: 185 LKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHAPNDTLRDHLVPLNKK 244
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+PLKEL+ AC RY+ Y+PR ITFEYCML GINDTD HA EL+ L++ SCK+NLI
Sbjct: 245 HPLKELMAACQRYLDYAPRDFITFEYCMLDGINDTDEHARELVKLVKHGPNPVSCKLNLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN L S ++R++ FAKIL+++GI T+RK RG DI AACG L+G+I
Sbjct: 305 PFNSIAMPGLKRSTDARVQSFAKILLDAGIVTTVRKARGEDIEAACGLLAGEI 357
>gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
Length = 387
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 214/353 (60%), Positives = 272/353 (77%), Gaps = 2/353 (0%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL +P++ V YCK L E PFRAKQLQ+WIH+ GVSDF MTDL+ SLR KL+ +
Sbjct: 6 TNLLGFTPVQLVEYCKTLNEKPFRAKQLQRWIHQSGVSDFAGMTDLAKSLRGKLEGCAEV 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+AP ++ D +S DGTRKW+ V + N IETV+IPE NR TLC+STQ GCA+NC+FCSTG+
Sbjct: 66 RAPKVLKDHLSADGTRKWLLDVGEGNAIETVYIPEDNRGTLCVSTQAGCAVNCLFCSTGK 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW+ EF +RR KN+ N Q +RQI+N+VMMGMGEPL N+ +++ A
Sbjct: 126 QGFSRNLTTDEIIGQLWMAEFAIRRSKNMAAN-QSERQISNVVMMGMGEPLFNFDASVNA 184
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LKL+L D+AYGLSRR V +STSG++PMID+LA+ECPV LAVSLHA ++ LR+ LVP+++K
Sbjct: 185 LKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECPVALAVSLHAPSDKLRDMLVPLNRK 244
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+PL EL+ AC RY+ Y+PR ITFEYCML GINDTD HA EL+ L++ SCK+NLI
Sbjct: 245 HPLSELMAACRRYLEYAPRDFITFEYCMLDGINDTDEHAKELVELVKHGSDPVSCKLNLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN P L S ++RI FAKIL+++GI T+RK RG DI AACG L+G +
Sbjct: 305 PFNSIPMPGLKRSSDARISAFAKILLDAGIVTTVRKTRGEDIEAACGLLAGDV 357
>gi|413962504|ref|ZP_11401731.1| radical SAM enzyme, Cfr family protein [Burkholderia sp. SJ98]
gi|413928336|gb|EKS67624.1| radical SAM enzyme, Cfr family protein [Burkholderia sp. SJ98]
Length = 380
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL YC LGE PFRAKQLQ+WIH++G DF+ MTDL+ SLR+KLK +
Sbjct: 8 NLLDLDAAGLTAYCASLGEKPFRAKQLQRWIHQYGAEDFDGMTDLAKSLREKLKGRANMA 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIISDHVSADGTRKWLVDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK--RQITNIVMMGMGEPLLNYKSTIG 179
GF RNLT GEIIGQL + EF LR+ ++ GK R +TN+VMMGMGEP+LNY + +
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRKSLGREVGGPGKGERVVTNVVMMGMGEPMLNYDAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+LA + PV LAVSLHA N+ LR+ LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLAADLPVALAVSLHAPNDPLRDMLVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L SKN +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLTRSKNEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
Length = 391
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 207/352 (58%), Positives = 264/352 (75%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRA+QLQ+WIH GVSDF+ MTDL+ SLR KLK I+
Sbjct: 20 NLLDFDAAGLVAYCASLGEKPFRARQLQRWIHHGGVSDFDAMTDLAKSLRDKLKTRASIR 79
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ D S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 80 HPAVLQDHTSADGTRKWLLDVGEGNAVETVYIPEQGRGTLCVSSQAGCAVNCRFCSTGKQ 139
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL VGEIIGQLW+ EF LR + + G+R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 140 GFSRNLGVGEIIGQLWMAEFALRAARGGL--APGERVITNVVMMGMGEPLLNFDAVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L DHAYGLSRR V LSTSG++PMID+LA E PV LAVSLHA N+ LR++LVP+++KY
Sbjct: 198 RLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAELPVALAVSLHAPNDALRDELVPLNRKY 257
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC+RY+ +PR ITFEYCML G+ND D HA +L++L R CK NLIP
Sbjct: 258 PLAELMAACNRYLRVAPRDFITFEYCMLDGVNDRDEHARQLLALTRD----VPCKFNLIP 313
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L+ S RIK FA+IL+++G+ T+R+ RG+DI+AACGQL+G++
Sbjct: 314 FNPFPESGLLRSHPERIKQFAQILIDAGVVTTVRRTRGDDIDAACGQLAGEV 365
>gi|377820992|ref|YP_004977363.1| radical SAM enzyme, Cfr family [Burkholderia sp. YI23]
gi|357935827|gb|AET89386.1| radical SAM enzyme, Cfr family [Burkholderia sp. YI23]
Length = 380
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL YC LGE PFRAKQLQ+WIH++G DF+ MTDL+ SLR+KLK +
Sbjct: 8 NLLDLDAAGLTAYCASLGEKPFRAKQLQRWIHQYGADDFDGMTDLAKSLREKLKGRANMA 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIISDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK--RQITNIVMMGMGEPLLNYKSTIG 179
GF RNLT GEIIGQL + EF LRR ++ GK R +TN+VMMGMGEP+LNY + +
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRRSLGREVGGPGKGERVVTNVVMMGMGEPMLNYDAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+LA + PV LAVSLHA N+ LR+ LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLAADLPVALAVSLHAPNDPLRDMLVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L SKN +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLTRSKNEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
Length = 378
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 263/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAMIG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSSDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EI+GQL + EF LR + N + R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNGKADRVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+T +PR ITFEYCML G+NDTD HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLTVAPRDFITFEYCMLDGVNDTDAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ SKN RIK F++IL+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLLRSKNERIKQFSQILIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|295676905|ref|YP_003605429.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
gi|295436748|gb|ADG15918.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1002]
Length = 383
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 206/358 (57%), Positives = 267/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGVVSDHISSDGTRKWLIDVGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKN------IKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + I + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAIGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHASN+ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADVPVALAVSLHASNDALRDVLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ HA EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|238027069|ref|YP_002911300.1| radical SAM superfamily protein [Burkholderia glumae BGR1]
gi|237876263|gb|ACR28596.1| radical SAM superfamily protein [Burkholderia glumae BGR1]
Length = 378
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAVIG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSSDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EI+GQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIVGQLRMAEFALRESLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR+ LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDMLVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML GINDTD HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLAVAPRDFITFEYCMLDGINDTDAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ SKN RIK F++IL+ +G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLLRSKNERIKQFSQILIEAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
Length = 383
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 267/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGVVSDHISSDGTRKWLIDVGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKN------IKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + + + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASRGDAGGRAMGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA N+ LR++LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ HA +L+++ R C
Sbjct: 248 PLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHARQLLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKQEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
EO147]
Length = 378
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/356 (57%), Positives = 265/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGSGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNGRADRVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+DKL E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL++L R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|385209016|ref|ZP_10035884.1| 23S rRNA m2A2503 methyltransferase [Burkholderia sp. Ch1-1]
gi|385181354|gb|EIF30630.1| 23S rRNA m2A2503 methyltransferase [Burkholderia sp. Ch1-1]
Length = 383
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/358 (56%), Positives = 265/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDHISTDGTRKWLIDVGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + + + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
C6786]
Length = 378
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 265/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGSGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGREPGPNGRADRVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+DKL E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL++L R CK
Sbjct: 246 NRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKPDQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|374366356|ref|ZP_09624437.1| hypothetical protein OR16_10354 [Cupriavidus basilensis OR16]
gi|373102140|gb|EHP43180.1| hypothetical protein OR16_10354 [Cupriavidus basilensis OR16]
Length = 384
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH+FG S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHQFGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P +++D +S DGTRKW+ V + +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRSPAVITDNLSADGTRKWLLDVGAGDAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + ++ R I+N+VMMGMGEPLLNY +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMRAQ--LGRGAKDDRVISNVVMMGMGEPLLNYDQVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L DHAYGLSRR V LSTSG++PM+D+LA++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDHAYGLSRRRVTLSTSGVVPMMDRLAKDLPVALAVSLHASNDPLRDMLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|167719265|ref|ZP_02402501.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
DM98]
gi|418382995|ref|ZP_12966914.1| radical SAM protein [Burkholderia pseudomallei 354a]
gi|418553140|ref|ZP_13117978.1| radical SAM protein [Burkholderia pseudomallei 354e]
gi|385372074|gb|EIF77206.1| radical SAM protein [Burkholderia pseudomallei 354e]
gi|385376834|gb|EIF81469.1| radical SAM protein [Burkholderia pseudomallei 354a]
Length = 378
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA+IL+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQILIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|254252255|ref|ZP_04945573.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
gi|124894864|gb|EAY68744.1| hypothetical protein BDAG_01475 [Burkholderia dolosa AUO158]
Length = 379
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/354 (58%), Positives = 263/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ SDF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNASDFDGMTDLAKSLREKLKGRASIA 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIVSDHVSADGTRKWLIDVGNGNAVETVFIPEGTRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ GEIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTGEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA+IL+++GI T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQILIDAGIVTTVRKTRGDDIDAACGQLAGAV 357
>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
gi|205829685|sp|B2JIV3.1|RLMN_BURP8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
Length = 382
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 266/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAAGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRASIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPPVVSDHISSDGTRKWLVDVGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNL GEIIGQL + EF LR + + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLGTGEIIGQLRMAEFALRASRGTAGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA N+ LR++LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ HA EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L+ SK+ +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLLRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
TXDOH]
Length = 378
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGGLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL++L R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264]
gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
Bt4]
gi|123753780|sp|Q2SWE6.1|RLMN_BURTA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264]
Length = 378
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGGLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL++L R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
gi|205829686|sp|B2SXT2.1|RLMN_BURPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
Length = 383
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 205/358 (57%), Positives = 264/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDNISTDGTRKWLIDVGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT EIIGQL + EF LR + I + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTAEIIGQLRMAEFALRASRGIDGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL++L R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|53719145|ref|YP_108131.1| hypothetical protein BPSL1511 [Burkholderia pseudomallei K96243]
gi|53723553|ref|YP_103007.1| radical SAM protein [Burkholderia mallei ATCC 23344]
gi|67639886|ref|ZP_00438715.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
gi|76811596|ref|YP_333752.1| radical SAM protein [Burkholderia pseudomallei 1710b]
gi|121600638|ref|YP_993156.1| radical SAM protein [Burkholderia mallei SAVP1]
gi|124383540|ref|YP_001026069.1| radical SAM protein [Burkholderia mallei NCTC 10229]
gi|126440813|ref|YP_001059227.1| radical SAM protein [Burkholderia pseudomallei 668]
gi|126450494|ref|YP_001080663.1| radical SAM protein [Burkholderia mallei NCTC 10247]
gi|126453816|ref|YP_001066494.1| radical SAM protein [Burkholderia pseudomallei 1106a]
gi|134277659|ref|ZP_01764374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
gi|167002245|ref|ZP_02268035.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
gi|167738262|ref|ZP_02411036.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
14]
gi|167815452|ref|ZP_02447132.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
91]
gi|167845403|ref|ZP_02470911.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
B7210]
gi|167902394|ref|ZP_02489599.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
NCTC 13177]
gi|167910636|ref|ZP_02497727.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
112]
gi|217421523|ref|ZP_03453027.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
gi|242316984|ref|ZP_04816000.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
gi|254177964|ref|ZP_04884619.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
gi|254179549|ref|ZP_04886148.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
gi|254189060|ref|ZP_04895571.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
52237]
gi|254197853|ref|ZP_04904275.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
gi|254199953|ref|ZP_04906319.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
gi|254206286|ref|ZP_04912638.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
gi|254259301|ref|ZP_04950355.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
gi|254297426|ref|ZP_04964879.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
gi|386861532|ref|YP_006274481.1| radical SAM protein [Burkholderia pseudomallei 1026b]
gi|403518922|ref|YP_006653055.1| radical SAM protein [Burkholderia pseudomallei BPC006]
gi|418539384|ref|ZP_13104980.1| radical SAM protein [Burkholderia pseudomallei 1026a]
gi|418540676|ref|ZP_13106201.1| radical SAM protein [Burkholderia pseudomallei 1258a]
gi|418546921|ref|ZP_13112107.1| radical SAM protein [Burkholderia pseudomallei 1258b]
gi|81379862|sp|Q63UT5.1|RLMN_BURPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81604959|sp|Q62JW2.1|RLMN_BURMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123744447|sp|Q3JRQ1.1|RLMN_BURP1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829680|sp|A3MK77.1|RLMN_BURM7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829681|sp|A2S2A0.1|RLMN_BURM9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829682|sp|A1V4K3.1|RLMN_BURMS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829683|sp|A3NVX3.1|RLMN_BURP0 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829684|sp|A3NA56.1|RLMN_BURP6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|52209559|emb|CAH35512.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52426976|gb|AAU47569.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 23344]
gi|76581049|gb|ABA50524.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710b]
gi|121229448|gb|ABM51966.1| radical SAM enzyme, Cfr family [Burkholderia mallei SAVP1]
gi|124291560|gb|ABN00829.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10229]
gi|126220306|gb|ABN83812.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 668]
gi|126227458|gb|ABN90998.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106a]
gi|126243364|gb|ABO06457.1| radical SAM enzyme, Cfr family [Burkholderia mallei NCTC 10247]
gi|134251309|gb|EBA51388.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 305]
gi|147749549|gb|EDK56623.1| radical SAM enzyme, Cfr family [Burkholderia mallei FMH]
gi|147753729|gb|EDK60794.1| radical SAM enzyme, Cfr family [Burkholderia mallei JHU]
gi|157807225|gb|EDO84395.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 406e]
gi|157936739|gb|EDO92409.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pasteur
52237]
gi|160699003|gb|EDP88973.1| radical SAM enzyme, Cfr family [Burkholderia mallei ATCC 10399]
gi|169654594|gb|EDS87287.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei S13]
gi|184210089|gb|EDU07132.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1655]
gi|217395265|gb|EEC35283.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 576]
gi|238520497|gb|EEP83956.1| radical SAM enzyme, Cfr family [Burkholderia mallei GB8 horse 4]
gi|242140223|gb|EES26625.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1106b]
gi|243062062|gb|EES44248.1| radical SAM enzyme, Cfr family [Burkholderia mallei PRL-20]
gi|254217990|gb|EET07374.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei 1710a]
gi|385346008|gb|EIF52701.1| radical SAM protein [Burkholderia pseudomallei 1026a]
gi|385360810|gb|EIF66717.1| radical SAM protein [Burkholderia pseudomallei 1258a]
gi|385362720|gb|EIF68525.1| radical SAM protein [Burkholderia pseudomallei 1258b]
gi|385658660|gb|AFI66083.1| radical SAM protein [Burkholderia pseudomallei 1026b]
gi|403074564|gb|AFR16144.1| radical SAM protein [Burkholderia pseudomallei BPC006]
Length = 378
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|91784209|ref|YP_559415.1| hypothetical protein Bxe_A1592 [Burkholderia xenovorans LB400]
gi|123358658|sp|Q13X26.1|RLMN_BURXL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91688163|gb|ABE31363.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia xenovorans
LB400]
Length = 383
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 265/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRA+QLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRARQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDHISTDGTRKWLIDVGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + + + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVITTVRKTRGDDIDAACGQLAGAV 361
>gi|416920669|ref|ZP_11932606.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
Length = 379
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA+IL+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
gi|424904625|ref|ZP_18328135.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
gi|390930603|gb|EIP88005.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
Length = 378
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 265/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R +TN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT HA EL++L R CK
Sbjct: 246 NRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLALTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++GI TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGIVTTIRKTRGDDIDAACGQLAGAV 357
>gi|254358299|ref|ZP_04974572.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
gi|148027426|gb|EDK85447.1| radical SAM enzyme, Cfr family [Burkholderia mallei 2002721280]
Length = 378
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 265/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNADDFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|167823864|ref|ZP_02455335.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
9]
gi|226197115|ref|ZP_03792692.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
9]
gi|237812551|ref|YP_002897002.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
gi|225930494|gb|EEH26504.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei Pakistan
9]
gi|237502725|gb|ACQ95043.1| radical SAM enzyme, Cfr family [Burkholderia pseudomallei MSHR346]
Length = 378
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 264/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK--RQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR GK R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKVERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|323526580|ref|YP_004228733.1| radical SAM protein [Burkholderia sp. CCGE1001]
gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
Length = 383
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 264/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC+ LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK +
Sbjct: 8 NLLDLDAQGLVAYCESLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATLT 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDHVSADGTRKWLIDVGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE------KNIKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL++L R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L+ SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLVRSKQEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
gi|421866980|ref|ZP_16298642.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia
cenocepacia H111]
gi|444359172|ref|ZP_21160500.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia BC7]
gi|444370037|ref|ZP_21169731.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia
K56-2Valvano]
gi|254807159|sp|B4EAX1.1|RLMN_BURCJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
gi|358073144|emb|CCE49520.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia
cenocepacia H111]
gi|443598135|gb|ELT66520.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia
K56-2Valvano]
gi|443602509|gb|ELT70584.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia BC7]
Length = 379
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|390568820|ref|ZP_10249112.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|420250111|ref|ZP_14753338.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
gi|389939169|gb|EIN01006.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|398062477|gb|EJL54251.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
Length = 382
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/358 (56%), Positives = 264/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+W+H++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAAGLVAYCDSLGEKPFRAKQLQRWLHQYNAADFDGMTDLAKSLREKLKGRASIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPPIVSDHISTDGTRKWLVDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE------KNIKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNL+ GEIIGQL + EF LR + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLSTGEIIGQLRMAEFALRASLGTAGGRATGGEGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA N+ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDVLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ HA EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L SKN +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLFRSKNEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|407714027|ref|YP_006834592.1| ribosomal RNA large subunit methyltransferase N [Burkholderia
phenoliruptrix BR3459a]
gi|407236211|gb|AFT86410.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia
phenoliruptrix BR3459a]
Length = 388
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 264/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC+ LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK +
Sbjct: 13 NLLDLDAQGLVAYCESLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATLT 72
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD IS DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 73 MPGVVSDHISADGTRKWLIDVGNSNAVETVFIPEEARGTLCVSSQAGCAVNCRFCSTGKQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE------KNIKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + +G+R +TN+VMMGMGEPLLNY
Sbjct: 133 GFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYD 192
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 193 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 252
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL++L R C
Sbjct: 253 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRD----VPC 308
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L+ SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 309 KFNLIPFNPFPESGLVRSKQEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 366
>gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383]
gi|123770007|sp|Q39FQ7.1|RLMN_BURS3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383]
Length = 379
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDPLRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054]
gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424]
gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3]
gi|123179922|sp|Q1BGX6.1|RLMN_BURCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829678|sp|B1JT94.1|RLMN_BURCC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829679|sp|A0K7T8.1|RLMN_BURCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU
1054]
gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia
HI2424]
gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3]
Length = 379
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|167893945|ref|ZP_02481347.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
7894]
gi|167918665|ref|ZP_02505756.1| radical SAM enzyme, Cfr family protein [Burkholderia pseudomallei
BCC215]
Length = 378
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+++L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMERLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
Length = 383
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/358 (56%), Positives = 264/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDHISTDGTRKWLIEVGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE------KNIKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + + +G+R +TN+VMMGM EPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASLGAAGGRAVGGEGKGERVVTNVVMMGMAEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL++L R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L+ SK+ +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLVRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
gi|123732898|sp|Q46ZI0.1|RLMN_CUPPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|72119190|gb|AAZ61453.1| 23S rRNA m(2)A-2503 methyltransferase [Ralstonia eutropha JMP134]
Length = 384
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH+FG S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHQFGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P ++D +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRSPAAITDNLSADGTRKWLLDVGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT GEIIGQLW+ EF +R + + + R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLTTGEIIGQLWMAEFAMREQ--LGRGPKDDRVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|430806169|ref|ZP_19433284.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
gi|429501549|gb|EKZ99880.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
Length = 384
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/355 (57%), Positives = 265/355 (74%), Gaps = 7/355 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH+FG S F+ MTDL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHQFGASHFDAMTDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P +SD S DGTRKW+ V N +ETV+IPE R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRSPAAISDNTSSDGTRKWLLDVGDGNAVETVYIPEDTRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + +R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMRAQ--LGRGPKDERVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP+++
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNR 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP S L S N +I+ FA+ILM++GI TIRK RG+DI+AACGQL+G+++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVM 352
>gi|94311047|ref|YP_584257.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
gi|123260051|sp|Q1LLI8.1|RLMN_RALME RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
Length = 384
Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/355 (56%), Positives = 265/355 (74%), Gaps = 7/355 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH+FG S F+ MTDL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHQFGASHFDAMTDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P +SD S DGTRKW+ V N +ETV+IPE R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRSPAAISDHTSSDGTRKWLLDVGAGNAVETVYIPEDTRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + +R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMRAQ--LGRGPKDERVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP+++
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNR 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G+++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEVM 352
>gi|221198083|ref|ZP_03571129.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
gi|221204358|ref|ZP_03577375.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
gi|221212767|ref|ZP_03585743.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
gi|421466928|ref|ZP_15915598.1| 23S rRNA m2A2503 methyltransferase [Burkholderia multivorans ATCC
BAA-247]
gi|221166980|gb|EED99450.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD1]
gi|221175215|gb|EEE07645.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2]
gi|221182015|gb|EEE14416.1| radical SAM enzyme, Cfr family [Burkholderia multivorans CGD2M]
gi|400234184|gb|EJO63658.1| 23S rRNA m2A2503 methyltransferase [Burkholderia multivorans ATCC
BAA-247]
Length = 378
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 262/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIVSDHVSADGTRKWLVDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA+IL+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|134295845|ref|YP_001119580.1| radical SAM protein [Burkholderia vietnamiensis G4]
gi|387902358|ref|YP_006332697.1| ribosomal RNA large subunit methyltransferase N [Burkholderia sp.
KJ006]
gi|205829687|sp|A4JEP2.1|RLMN_BURVG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|134139002|gb|ABO54745.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia vietnamiensis
G4]
gi|387577250|gb|AFJ85966.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia sp.
KJ006]
Length = 379
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATIG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|402566386|ref|YP_006615731.1| radical SAM enzyme, Cfr family [Burkholderia cepacia GG4]
gi|402247583|gb|AFQ48037.1| radical SAM enzyme, Cfr family [Burkholderia cepacia GG4]
Length = 379
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 262/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIVSDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG
19424]
gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family
domain; putative iron binding enzyme [Cupriavidus
taiwanensis LMG 19424]
Length = 384
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH +G S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP +++D +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRAPAVITDNLSADGTRKWLLDVGEGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMREQ--LGRGPKDDRVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++G+ TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFAQVLMDAGVVTTIRKTRGDDIDAACGQLAGEV 351
>gi|421478076|ref|ZP_15925847.1| 23S rRNA m2A2503 methyltransferase [Burkholderia multivorans CF2]
gi|400225322|gb|EJO55497.1| 23S rRNA m2A2503 methyltransferase [Burkholderia multivorans CF2]
Length = 378
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 262/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNARDFDGMTDLAKSLREKLKGRASIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIVSDHVSADGTRKWLVDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA+IL+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|17545931|ref|NP_519333.1| hypothetical protein RSc1212 [Ralstonia solanacearum GMI1000]
gi|81505540|sp|Q8Y032.1|RLMN_RALSO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|17428226|emb|CAD14914.1| conserved hypothetical protein 48 [Ralstonia solanacearum GMI1000]
Length = 383
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEI+GQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIVGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+Q+ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|172060774|ref|YP_001808426.1| radical SAM protein [Burkholderia ambifaria MC40-6]
gi|205829677|sp|B1YR46.1|RLMN_BURA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|171993291|gb|ACB64210.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MC40-6]
Length = 379
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
Length = 383
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 263/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDHISADGTRKWLIDVGNSNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE------KNIKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASLGAAGGRATGGEGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL++L R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L+ S+ +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLVRSRPEQIKRFAQVLVDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>gi|170703874|ref|ZP_02894562.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
gi|171321348|ref|ZP_02910305.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
gi|170131219|gb|EDS99858.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria IOP40-10]
gi|171093366|gb|EDT38556.1| radical SAM enzyme, Cfr family [Burkholderia ambifaria MEX-5]
Length = 379
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|115351803|ref|YP_773642.1| radical SAM protein [Burkholderia ambifaria AMMD]
gi|122323090|sp|Q0BEW5.1|RLMN_BURCM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|115281791|gb|ABI87308.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia ambifaria AMMD]
Length = 379
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|339326398|ref|YP_004686091.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
gi|338166555|gb|AEI77610.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
Length = 384
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH +G S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++D +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRAPAAITDNLSADGTRKWLLDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMREQ--LGRGPKDDRVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|167587047|ref|ZP_02379435.1| radical SAM enzyme, Cfr family protein [Burkholderia ubonensis Bu]
Length = 379
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIVSDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR+ LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDMLVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA+IL+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
gi|123032871|sp|Q0K959.1|RLMN_CUPNH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
Length = 384
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH +G S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++D +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRAPAAITDHLSADGTRKWLLDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMREQ--LGRGPKDDRVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|299067263|emb|CBJ38460.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum CMR15]
Length = 383
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDNLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEI+GQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIVGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+ + PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELVAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|300691809|ref|YP_003752804.1| hypothetical protein RPSI07_2165 [Ralstonia solanacearum PSI07]
gi|299078869|emb|CBJ51530.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum PSI07]
gi|344166998|emb|CCA79189.1| conserved hypothetical protein, predicted radical SAM enzyme [blood
disease bacterium R229]
Length = 383
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAVR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|393778483|ref|ZP_10366756.1| Radical SAM enzyme, Cfr family [Ralstonia sp. PBA]
gi|392714521|gb|EIZ02122.1| Radical SAM enzyme, Cfr family [Ralstonia sp. PBA]
Length = 390
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD YC +LGE PFRA+QLQ+WIH+ G +F+ MTDL+ SLR+KL
Sbjct: 4 LVNLLDFDADGLAAYCGQLGEKPFRARQLQRWIHQSGADNFDGMTDLARSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+ P ++D IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRTPQAITDHISSDGTRKWLIDVGGGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT GEIIGQLW+ EF +R + + R ITN+VMMGMGEPLLNY+ +
Sbjct: 124 KQGFSRNLTAGEIIGQLWMAEFAMR--ARLGRGPKDPRVITNVVMMGMGEPLLNYEPVVT 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PMID+LA++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMIDRLARDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL++L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLAFAPRDFITFEYCMLDGVNDSIAHARELVALVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F ++L+++GI TIRK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFGQVLIDAGIVTTIRKTRGDDIDAACGQLAGDV 351
>gi|83747944|ref|ZP_00944975.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
gi|207743447|ref|YP_002259839.1| hypothetical protein 48 [Ralstonia solanacearum IPO1609]
gi|83725362|gb|EAP72509.1| Radical SAM family enzyme [Ralstonia solanacearum UW551]
gi|206594844|emb|CAQ61771.1| conserved hypothetical protein 48 [Ralstonia solanacearum IPO1609]
Length = 383
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEI+GQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIVGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|161524634|ref|YP_001579646.1| radical SAM protein [Burkholderia multivorans ATCC 17616]
gi|189350610|ref|YP_001946238.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
gi|160342063|gb|ABX15149.1| radical SAM enzyme, Cfr family [Burkholderia multivorans ATCC
17616]
gi|189334632|dbj|BAG43702.1| Cfr family radical SAM enzyme [Burkholderia multivorans ATCC 17616]
Length = 378
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 262/354 (74%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ +F+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGNFDGMTDLAKSLREKLKGRASIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIVSDHVSADGTRKWLVDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA+IL+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQILIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|187928149|ref|YP_001898636.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
gi|254807195|sp|B2U9U6.1|RLMN_RALPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|187725039|gb|ACD26204.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12J]
Length = 383
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD + YC+ LGE FRAKQLQ+WIH+ G S+F +MTDL+ SLR+KL
Sbjct: 4 VVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGASEFGEMTDLAKSLREKLATRAN 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL L+L D+AYGLSRR V +STSG++PM+D+LA++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 ALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+NDT HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|241662752|ref|YP_002981112.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
gi|240864779|gb|ACS62440.1| radical SAM enzyme, Cfr family [Ralstonia pickettii 12D]
Length = 383
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD + YC+ LGE FRAKQLQ+WIH+ G SDF +MTDL+ SLR+KL
Sbjct: 4 VVNLLDFDAHGLLAYCESLGEKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLATRAN 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP +++D +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVITDHLSSDGTRKWLVDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL L+L D+AYGLSRR V +STSG++PM+D+LA++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 ALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+NDT HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|300704417|ref|YP_003746020.1| hypothetical protein RCFBP_20221 [Ralstonia solanacearum CFBP2957]
gi|421888535|ref|ZP_16319625.1| conserved hypothetical protein, predicted radical SAM enzyme
[Ralstonia solanacearum K60-1]
gi|299072081|emb|CBJ43413.1| conserved protein of unknown function, predicted radical SAM enzyme
[Ralstonia solanacearum CFBP2957]
gi|378966093|emb|CCF96373.1| conserved hypothetical protein, predicted radical SAM enzyme
[Ralstonia solanacearum K60-1]
Length = 383
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEI+GQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIVGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+ + PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSHDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|386333819|ref|YP_006029990.1| hypothetical protein RSPO_c02157 [Ralstonia solanacearum Po82]
gi|334196269|gb|AEG69454.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
Length = 383
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL GEI+GQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLGTGEIVGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|309782324|ref|ZP_07677051.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
gi|404378016|ref|ZP_10983116.1| ribosomal RNA large subunit methyltransferase N [Ralstonia sp.
5_2_56FAA]
gi|308918942|gb|EFP64612.1| radical SAM enzyme, Cfr family [Ralstonia sp. 5_7_47FAA]
gi|348615947|gb|EGY65455.1| ribosomal RNA large subunit methyltransferase N [Ralstonia sp.
5_2_56FAA]
Length = 383
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD + YC+ LGE FRAKQLQ+WIH+ G SDF +MTDL+ SLR+KL
Sbjct: 4 VVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGASDFGEMTDLAKSLREKLATRAN 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP +++D +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVITDHLSSDGTRKWLVDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL L+L D+AYGLSRR V +STSG++PM+D+LA++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 ALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+NDT HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACCRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|344171691|emb|CCA84311.1| conserved hypothetical protein, predicted radical SAM enzyme
[Ralstonia syzygii R24]
Length = 383
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLAIRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAVR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVIAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|205829801|sp|A4SYE2.1|RLMN_POLSQ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 402
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/362 (55%), Positives = 258/362 (71%), Gaps = 14/362 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + Y L E PFRAKQL +WIH+ GVSD N M+DL+ S R L + V +
Sbjct: 7 NLLDFDADQMAAYVAGLNEKPFRAKQLMQWIHQRGVSDINDMSDLAKSFRATLLDKVEVL 66
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+ ++ D+ + DGTRKW+ V N +E+VFIPE +R TLCIS+Q GCA+NC FCSTGRQ
Sbjct: 67 SLPVIKDEHATDGTRKWLLDVGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGRQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-----KINSQG----KRQITNIVMMGMGEPLL 172
GF RNLT GEIIGQLW E LR + K + G R I+N+VMMGMGEPLL
Sbjct: 127 GFSRNLTSGEIIGQLWFAEHLLRNDPEAIRRIEKYPTPGWEHTGRVISNVVMMGMGEPLL 186
Query: 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRN 232
NY + + AL+L+L D AYGLSRR V +STSG++PMID+LAQ+CPV LAVSLHA N+ LR+
Sbjct: 187 NYDNVVSALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRD 246
Query: 233 KLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
+LVP+++KYPL+EL+ AC RY+ ++PR +TFEYCML G+ND+DI A EL+ L+R K
Sbjct: 247 QLVPLNQKYPLRELLDACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRLLRNIK-- 304
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
CKINLIPFN FP S L S R+ FA IL+++G+ T+RK RG+DI AACGQL+G
Sbjct: 305 --CKINLIPFNPFPESGLKRSSAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQLAGD 362
Query: 353 IL 354
++
Sbjct: 363 VV 364
>gi|339483565|ref|YP_004695351.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
Is79A3]
gi|338805710|gb|AEJ01952.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
Is79A3]
Length = 366
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/352 (54%), Positives = 256/352 (72%), Gaps = 6/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ V++C +GE PFRA+QL +WIH+ +DFN M+DL+ SLR+KL + I+
Sbjct: 4 NLLNYDSKGLVDFCTGIGEKPFRARQLLRWIHQNSTADFNAMSDLAKSLREKLADQAVIE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD ++ DGTRKW+ V N IETV+IPE NR TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 64 LPQIISDYVATDGTRKWLLAVGAGNGIETVYIPEANRGTLCVSSQVGCALACTFCSTGKQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQLW+ LR + + + Q R +TN+VMMGMGEPL N+++ + AL
Sbjct: 124 GFNRNLTVAEIVGQLWIANKTLRSDVS-DTSIQANRAVTNVVMMGMGEPLANFENVVTAL 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L DHAYGLSRR V +STSG++P ID+L + CPV LA+SLHA N+ LR++LVPI+KKY
Sbjct: 183 DLMLDDHAYGLSRRRVTVSTSGLVPAIDRLRERCPVALAISLHAPNDALRDQLVPINKKY 242
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+KEL+ AC RY+ +PR ITFEY ML G+ND+ HA ELI+L++ T CK NLIP
Sbjct: 243 PIKELLAACQRYLLAAPRDFITFEYVMLAGVNDSIAHARELIALVQD----TPCKFNLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S S +++F +LM +G+ T+RK RG+DI AACGQL+G++
Sbjct: 299 FNSFPGSGFKRSTAETVRVFRDVLMQAGLVTTVRKTRGDDIAAACGQLAGQV 350
>gi|254248069|ref|ZP_04941390.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
gi|124872845|gb|EAY64561.1| hypothetical protein BCPG_02893 [Burkholderia cenocepacia PC184]
Length = 379
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/354 (55%), Positives = 252/354 (71%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+ LNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVSDDEHERAALNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>gi|74316609|ref|YP_314349.1| hypothetical protein Tbd_0591 [Thiobacillus denitrificans ATCC
25259]
gi|123773051|sp|Q3SL73.1|RLMN_THIDA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|74056104|gb|AAZ96544.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 372
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/357 (54%), Positives = 257/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + E GE PFRA+Q+ WIH+ GV+DF +MTD++ SLR+KL+N ++
Sbjct: 4 NLLDFDLAGLTAWFGERGEKPFRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQNEAVVQ 63
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I +S DGTRKW+F V N IETVFIPE +R TLC+S+QVGCA+ C FCSTGRQ
Sbjct: 64 APAINFAHLSADGTRKWLFDVGVGNGIETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-----KRQITNIVMMGMGEPLLNYKS 176
GF RNLTV EI+GQLWV + L+RE N + G +R +TN+VMMGMGEPL N+++
Sbjct: 124 GFNRNLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMGMGEPLANFEN 183
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL ++L DHAYGLSRR V +STSG++P +D+LA+ CPV LAVSLHA N+ LR+++VP
Sbjct: 184 VVTALGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAPNDALRDQIVP 243
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
I++KYPL EL+ AC RY+ ++PR ITFEY ML G+ND HA +LI+L R CK
Sbjct: 244 INRKYPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALTRD----VPCK 299
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP+S + +++F +IL ++G VT RK RG+DI+AACGQL+G++
Sbjct: 300 FNLIPFNPFPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLAGRV 356
>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
Length = 374
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/355 (54%), Positives = 254/355 (71%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL +C+ LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KLK ++
Sbjct: 3 TNLLDLDLDAMAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKGCAHV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+S+ S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 SGLQAISEHASADGTVKWLFDVGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEIVAQLWHAEHVLRQRRG-----DGERVISNVVMMGMGEPLQNYSALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+L ++CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDELRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI--LTSCKIN 298
YPL+EL+ AC RY+ ++PR ITFEYCML G+ND HA ELI+L+ + SCK N
Sbjct: 238 YPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFN 297
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S + + FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 LIPFNPFPASGLRRSPAAAVSAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 352
>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
Length = 379
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/354 (54%), Positives = 259/354 (73%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD S + + +C LGE PFRAKQL KWIH+ G+ +F+ MTDL+ S R+ L +
Sbjct: 5 LDNLLDYSVPELIQWCGNLGEKPFRAKQLAKWIHQSGMDNFDSMTDLAKSFRQNLNSRAC 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP I+SD +S DGTRKW+F V + +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 65 IKAPSIISDNVSKDGTRKWLFDVGNGDAVETVFIPEERRGTLCVSSQAGCAVNCRFCSTG 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ EI+ QLW L RE ++ +Q +R +TN+VMMGMGEPLLNY + +
Sbjct: 125 KQGFSRNLSTAEIVAQLWKANV-LLREAGDRVYAQ-ERPVTNVVMMGMGEPLLNYDALVP 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D AYGLSRR V +STSG++P +D+L+Q+CPV LAVSLHA N+ LR+ LVP++K
Sbjct: 183 ALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCPVALAVSLHAPNDALRDHLVPLNK 242
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ ++PR ITFEY ML G+ND HA +L+ + + + CK NL
Sbjct: 243 KYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEIAK----IVPCKFNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S + IK F IL +G+ T+RK RG+DI+AACGQL+G++
Sbjct: 299 IPFNPFPESGLLKSTSPAIKTFVDILGGAGVVTTVRKTRGDDIDAACGQLAGEV 352
>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
Length = 373
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 264/354 (74%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L ++C +LGE FRA QL +WIH+ G SDF+ M+DL+++LR KLK ++
Sbjct: 3 TNLLELDLDGLADFCGQLGEKRFRATQLFRWIHQRGASDFDAMSDLAVALRTKLKGCAFV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A ++S+ +S DGT KW+F V N +E+VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 QALPVISEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ ++ +Q R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEIVAQLWFAEHALRK----RLATQ-SRVISNVVMMGMGEPLQNYTALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK-ILTSCKINL 299
YPL+EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI+L+ + + CK NL
Sbjct: 238 YPLEELLDACRRYLEHAPRDFITFEYCMLDGVNDQVEHARQLIALVNPAQGVPIRCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S ++++ +FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLLRSPSAQVAMFAKVLSDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
gi|205829650|sp|A1K3Y6.1|RLMN_AZOSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 375
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/357 (54%), Positives = 254/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V++ LGE PFRA+Q+ +W+H+ G DF++MTD++ SLR KLK I+
Sbjct: 6 NLLDFDVDGLVDWFAGLGEKPFRARQVMRWMHREGCDDFDQMTDVAKSLRAKLKEIAVIR 65
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + D +S DGTRKW+ V N +ETVFIPE NR TLC+S+Q GCA++C FCSTG+Q
Sbjct: 66 PPVPVRDSVSSDGTRKWLLDVGNANAVETVFIPETNRGTLCVSSQAGCALDCAFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNLT EIIGQLW+ L ++ + + R I+N+VMMGMGEPL N+ +
Sbjct: 126 GFNRNLTAAEIIGQLWLANKLLGAARDAAADLEAGEKDNGRIISNVVMMGMGEPLANFDN 185
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L DHAYGLSRR V +STSGI+P ID+L ECPV LAVSLHASN+ LR++LVP
Sbjct: 186 VVTALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECPVALAVSLHASNDALRDRLVP 245
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
I++KYPL+EL+ AC RY+ +PR ITFEY ML G+ND + HA ELI+L+R CK
Sbjct: 246 INQKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHARELIALVRD----VPCK 301
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FPNS S RI+ FA IL+++GI T RK RG+D++AACGQL+G++
Sbjct: 302 FNLIPFNPFPNSGFQRSNAERIRRFAGILLDAGIVTTTRKTRGDDVDAACGQLAGQV 358
>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
Length = 374
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/355 (54%), Positives = 253/355 (71%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL +C+ LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KLK ++
Sbjct: 3 TNLLDLDLDAMAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKGCAHV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+S+ S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 SGLQAISEHASADGTVKWLFDVGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEIVAQLWHAEHVLRQRRG-----DGERVISNVVMMGMGEPLQNYSALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+L ++CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDELRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI--LTSCKIN 298
YPL+EL+ AC RY+ ++PR ITFEYCML G+ND HA ELI+L+ + SCK N
Sbjct: 238 YPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIALVSRKAADGGVSCKFN 297
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S + FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 LIPFNPFPASGLRRSPAVAVSAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 352
>gi|325981894|ref|YP_004294296.1| ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
AL212]
gi|325531413|gb|ADZ26134.1| Ribosomal RNA large subunit methyltransferase N [Nitrosomonas sp.
AL212]
Length = 366
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/352 (55%), Positives = 256/352 (72%), Gaps = 6/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ V++C E+GE PFRA+QL +WIH+FG++DF+ M+DL+ LR+KL I+
Sbjct: 4 NLLNYDNKSLVDFCTEIGEKPFRARQLLRWIHQFGIADFDLMSDLAKGLREKLATQAVIE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P IMSD ++ DGTRKW+ V N IETVFIPE +R TLCIS+QVGCA+ C FCSTG+Q
Sbjct: 64 LPTIMSDYVAADGTRKWLLSVGAGNGIETVFIPEISRGTLCISSQVGCALACTFCSTGKQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EIIGQLW+ K+ Q KR +TN+VMMGMGEPL N+++ + AL
Sbjct: 124 GFNRNLTVAEIIGQLWIAN-KMLETCGDDTKLQTKRAVTNVVMMGMGEPLANFENVVTAL 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L DHAYGLSRR V +STSG++P ID+L + CPV LAVSLHA N+ LR++LVPI+KKY
Sbjct: 183 DLMLDDHAYGLSRRRVTVSTSGLVPAIDRLRERCPVALAVSLHAPNDTLRDQLVPINKKY 242
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+KEL+ AC RY++ +PR ITFEY ML GIND+ HA EL+ L++ CK NLIP
Sbjct: 243 PIKELLAACQRYLSAAPRDFITFEYVMLDGINDSVAHACELVKLVQD----IPCKFNLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN F +S S I++F +L+++G+ T+RK RG+DI AACGQL+G++
Sbjct: 299 FNSFSDSGYKRSSTEAIRVFRDVLVHAGLITTVRKTRGDDIAAACGQLAGQV 350
>gi|205829861|sp|A9BMV6.2|RLMN_DELAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 374
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 257/354 (72%), Gaps = 6/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD YC++LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KLK +I
Sbjct: 3 TNLLDFDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++++ +S DGT KW+F V + +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 TALPVLTEHVSADGTVKWLFDVGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR+ ++ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLSTGEILAQLWYAEHSLRK----RLGTGGERVISNVVMMGMGEPLQNYTALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PMID+L+Q+C V +AVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINL 299
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + + CK NL
Sbjct: 239 YPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 IPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDV 352
>gi|333913248|ref|YP_004486980.1| ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
gi|333743448|gb|AEF88625.1| Ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
Length = 397
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 257/354 (72%), Gaps = 6/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD YC++LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KLK +I
Sbjct: 26 TNLLDFDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHI 85
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++++ +S DGT KW+F V + +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 86 TALPVLTEHVSADGTVKWLFDVGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 145
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR+ ++ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 146 QGFSRNLSTGEILAQLWYAEHALRK----RLGTGGERVISNVVMMGMGEPLQNYTALVPA 201
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PMID+L+Q+C V +AVSLHA N+ LR+ LVP+++K
Sbjct: 202 LRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRK 261
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINL 299
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + + CK NL
Sbjct: 262 YPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNL 321
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 322 IPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDV 375
>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
Length = 397
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 257/354 (72%), Gaps = 6/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD YC++LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KLK +I
Sbjct: 26 TNLLDFDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHI 85
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++++ +S DGT KW+F V + +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 86 TALPVLTEHVSADGTVKWLFDVGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 145
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR+ ++ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 146 QGFSRNLSTGEILAQLWYAEHSLRK----RLGTGGERVISNVVMMGMGEPLQNYTALVPA 201
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PMID+L+Q+C V +AVSLHA N+ LR+ LVP+++K
Sbjct: 202 LRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRK 261
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINL 299
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + + CK NL
Sbjct: 262 YPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNL 321
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 322 IPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDV 375
>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
Length = 374
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/355 (55%), Positives = 256/355 (72%), Gaps = 5/355 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLL+ + + + E GE PFRAKQL +W+H FGV DF +MTD++ LR+KL
Sbjct: 8 LVNLLNFNQPQLAKWFAEQGEKPFRAKQLMRWMHHFGVYDFEQMTDIAKVLREKLVVDAE 67
Query: 61 IKAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P++ +Q+S DGTRKW+ N IETVFIPE +R TLCIS+QVGCA+ C FCSTG
Sbjct: 68 ITLPNVQLEQVSNDGTRKWLIGTDTANSIETVFIPEDDRGTLCISSQVGCALECTFCSTG 127
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
RQGF RNL+V EIIGQL + LR+E + S R I+N+VMMGMGEPL NY + +
Sbjct: 128 RQGFNRNLSVSEIIGQLAIANQSLRQESGYDLLSANDRIISNVVMMGMGEPLANYDNVVT 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++++L D+AYGLSRR V LSTSG++P +D+L ++CPV LAVSLHA N+ LR+ +VPI+K
Sbjct: 188 AMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPLKEL+ AC+RY+ +PR +TFEY ML G+NDT HA +L+ L+R SCK NL
Sbjct: 248 KYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLDLVRN----VSCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FPNS SK S I++F ILM +G VT+RK RG DI+AACGQL+GK+L
Sbjct: 304 IPFNPFPNSGYDTSKASHIRVFRDILMQAGYVVTVRKTRGEDIDAACGQLAGKVL 358
>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
gi|205829704|sp|A1W574.1|RLMN_ACISJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
Length = 374
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 253/355 (71%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD +C+ LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KL+ ++
Sbjct: 3 TNLLDFDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+S+ +S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 AGLQAISEHVSADGTVKWLFDVGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEILAQLWYAEHALRQRRG-----DGERVISNVVMMGMGEPLQNYAALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL--TSCKIN 298
YPL EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+ + SCK N
Sbjct: 238 YPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFN 297
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S + + FA++L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 LIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 352
>gi|187478836|ref|YP_786860.1| hypothetical protein BAV2346 [Bordetella avium 197N]
gi|123725044|sp|Q2KY87.1|RLMN_BORA1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|115423422|emb|CAJ49956.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 382
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/356 (55%), Positives = 252/356 (70%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + + G PFRA+QLQ+W+H+ V F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDAKALTDLVGQWGGKPFRARQLQRWVHQRSVDSFDAMTDLARDFRAQLSERAIIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLW----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
GF RNL EIIGQLW V E + + ++ R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRTSEIIGQLWWAKRVLEADIGSARLANAGAEDTRVISNVVMMGMGEPLLNYDQV 187
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ AL+L+L D+ YGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR+ LVP+
Sbjct: 188 LPALRLMLDDNGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDALRDDLVPL 247
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK+
Sbjct: 248 NKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHAKELIQLARQVR----CKL 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 NLIPFNPFPASGLKRSAAPRVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 359
>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
Length = 383
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 253/355 (71%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD +C+ LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KL+ ++
Sbjct: 12 TNLLDFDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHV 71
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+S+ +S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 72 AGLQAISEHVSADGTVKWLFDVGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 131
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 132 QGFSRNLTTGEILAQLWYAEHALRQRRG-----DGERVISNVVMMGMGEPLQNYAALVPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 187 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRK 246
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL--TSCKIN 298
YPL EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+ + SCK N
Sbjct: 247 YPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFN 306
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S + + FA++L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 307 LIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 361
>gi|418531067|ref|ZP_13096986.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
gi|371451776|gb|EHN64809.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
Length = 373
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/354 (54%), Positives = 256/354 (72%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD YC++LGE FRA QL +WIH+ G SDF++MTDL+ SLR+KLK+ +I
Sbjct: 3 TNLLDFDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++++ +S DGT KW+F V N +E+VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 TALPVVTEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL GEI+ QLW E LR+ + R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLNTGEILAQLWYAEHSLRKRFGTE-----DRIISNVVMMGMGEPLQNYSALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+L+Q+C V LAVSLHA N+ LR+ LVP++KK
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINL 299
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + + CK NL
Sbjct: 238 YPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S ++R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLLRSPSARVTEFAALLSNAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|347820223|ref|ZP_08873657.1| radical SAM enzyme, Cfr family protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 370
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/353 (54%), Positives = 253/353 (71%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ +C +LGE FRA QL +WIH+ G SDF M+DL+ +LR KL+ +
Sbjct: 3 TNLLEFDLDALAAFCAQLGEQRFRATQLFRWIHQRGASDFGAMSDLAKALRSKLEGCARV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A ++S+Q + DGT KW+F V+ N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 EALPLISEQAASDGTLKWLFDVRDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR K +R ITN+VMMGMGEPL NY + I A
Sbjct: 123 QGFSRNLTAGEIVAQLWFAEHSLR-----KRFGTAERVITNLVMMGMGEPLQNYSALIPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR+KLVP+++K
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMLDRLAQDCPVALAVSLHAPNDPLRDKLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND A ELI L+R +I CK NLI
Sbjct: 238 YPIHELLQACKRYLVHAPRDFITFEYCMLDGVNDQLAQARELIDLVRGAEI--RCKFNLI 295
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S +++ FAK+L ++GI T+R+ RG+DI+AACGQL+G +
Sbjct: 296 PFNPFPASGLLRSTQNQLLAFAKVLSDAGIVTTVRRTRGDDIDAACGQLAGDV 348
>gi|358635845|dbj|BAL23142.1| Fe-S cluster redox protein [Azoarcus sp. KH32C]
Length = 377
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/358 (53%), Positives = 249/358 (69%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V + E GE PFRA+Q+ W+H+FG +DF+ MTD++ SLR KL I+
Sbjct: 6 NLLDFDVDGLVAWFAERGEKPFRARQVMHWMHRFGETDFDAMTDVAKSLRAKLAQEACIR 65
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + D +S DGTRKW+ V N +E VFIPE NR TLCIS+Q GCA++C FCSTG+Q
Sbjct: 66 PPQAIRDTVSHDGTRKWLLDVGSANAVEAVFIPETNRGTLCISSQAGCALDCAFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE------KNIKINSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT EIIGQLW+ L K+ + R I+N+VMMGMGEPL N+
Sbjct: 126 GFNRNLTAAEIIGQLWLANKLLGGAAAPAGAKDAEGEPDNGRVISNVVMMGMGEPLTNFD 185
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + AL+L+L DHAYGLSRR V +STSGI+P +D+L ECPV LAVSLHA ++ LR++LV
Sbjct: 186 NVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHAPDDALRDRLV 245
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
PI++KYPL+EL+ AC RY+ +PR +TFEY ML G+NDTD HA L++L+R C
Sbjct: 246 PINQKYPLRELMAACQRYLERAPRDFVTFEYVMLDGVNDTDAHARALVALVRD----VPC 301
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FPN+ S RI+ FA IL+++GI T RK RG+D+NAACGQL+G++
Sbjct: 302 KFNLIPFNPFPNAGFERSHPDRIRRFASILIDAGIVTTTRKTRGDDVNAACGQLAGQV 359
>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
Length = 373
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/354 (54%), Positives = 254/354 (71%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD YC++LGE FRA QL +WIH+ G SDF++MTDL+ SLR+KLK+ +I
Sbjct: 3 TNLLDFDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++++ +S DGT KW+F V N +E+VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 TALPVVTEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL GEI+ QLW E LR+ + R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLDTGEILAQLWYAEHSLRKRFGTE-----DRIISNVVMMGMGEPLQNYSALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+L+Q+C V LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS-CKINL 299
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R S CK NL
Sbjct: 238 YPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKSWCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLLRSSAARVTEFATMLSNAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|423016749|ref|ZP_17007470.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans AXX-A]
gi|338780177|gb|EGP44592.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans AXX-A]
Length = 384
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 258/357 (72%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L + I+
Sbjct: 8 NLLGLDASALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTDLARDFRGQLASRCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALAVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS----QGKRQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + ++ S + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI++ R+ + CK
Sbjct: 248 LNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHARELINIARQIR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S +R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPTARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 360
>gi|118594986|ref|ZP_01552333.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
gi|118440764|gb|EAV47391.1| hypothetical protein MB2181_04920 [Methylophilales bacterium
HTCC2181]
Length = 363
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/354 (54%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + + Y ++ G P+RAKQL KWI++ G DF++MTDL+ S R+ L+ +
Sbjct: 1 MDNLLDFNLRELTEYLEKFGHKPYRAKQLLKWIYQSGEHDFSQMTDLAKSFRQSLQTTSE 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I D +S DGTRKW+ V KN IE VFIPE +R TLCIS+QVGCA+ C FCSTG
Sbjct: 61 IATPSIQLDHLSTDGTRKWLLDVGAKNGIEAVFIPETDRGTLCISSQVGCALECTFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
RQGF RNLT GEI+GQLW+ LR + N ++ + R ITN+VMMGMGEPL NY +
Sbjct: 121 RQGFNRNLTSGEIVGQLWLANKMLREQANYRLLAHEDRIITNVVMMGMGEPLTNYNHVVH 180
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L DH YGLSRR V LSTSG+IP IDKL +CPV LA+SLHA ++ LR+++VPI+K
Sbjct: 181 ALEMMLDDHVYGLSRRRVTLSTSGLIPAIDKLRDDCPVSLAISLHAPDDKLRDEIVPINK 240
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL++L+ AC RYI +PR +TFEY ML G+ND+ A L+ L++ CK NL
Sbjct: 241 KYPLQDLMAACIRYIEKAPRDFVTFEYVMLEGVNDSVDQAKALVKLVKN----VPCKFNL 296
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FPNS +CS S I F ++LM++G+ T+RK RG+DI+AACGQL+G++
Sbjct: 297 IPFNPFPNSGYLCSSRSVINAFKQVLMDAGLVATVRKTRGDDIDAACGQLAGQV 350
>gi|452126159|ref|ZP_21938742.1| radical SAM superfamily protein 2 [Bordetella holmesii F627]
gi|452129527|ref|ZP_21942102.1| radical SAM superfamily protein 2 [Bordetella holmesii H558]
gi|451921254|gb|EMD71399.1| radical SAM superfamily protein 2 [Bordetella holmesii F627]
gi|451923162|gb|EMD73304.1| radical SAM superfamily protein 2 [Bordetella holmesii H558]
Length = 382
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/356 (54%), Positives = 254/356 (71%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + + + G PFRA+QLQ+WIH+ GV F+ M+DL+ R +L I+
Sbjct: 8 NLLGMDAKALADLVGQWGGKPFRARQLQRWIHQRGVDSFDAMSDLARDFRAQLTERCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSADGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLW----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
GF RNL EIIGQLW V E + + + + + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADVGSARLAQASGEDTRVISNVVMMGMGEPLLNYDQV 187
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ AL+++L D+ YGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR+ LVP+
Sbjct: 188 LPALRMMLDDNGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDDLVPL 247
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK+
Sbjct: 248 NKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CKL 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 NLIPFNPFPASGLKRSPAPRVRVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 359
>gi|398805477|ref|ZP_10564450.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
gi|398091513|gb|EJL81954.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
Length = 382
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 250/354 (70%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C+ LGE FRA QL +WIH+ G +DF +MTDL+ SLR+KL S +I
Sbjct: 3 ANLLDFDLDGLAAFCERLGEKRFRATQLFRWIHQKGATDFTQMTDLAKSLREKLTGSAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S S DGT KW+F V ++IETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 QGPKVVSRHDSADGTVKWLFDVGAGDVIETVFIPETDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEII QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLTTGEIISQLWFAEHFLRQHLGRE-----ERVISNVVMMGMGEPLQNYGQLVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LK++L DH YGLSRR V +STSG++PMID+LA +CPV LAVSLHA + LR+ LVP++KK
Sbjct: 178 LKVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAGDCPVALAVSLHAPEDALRDNLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-SCKINL 299
YP+ EL+ AC RY +PR ITFEYCML G+ND HA +L++L++ + SCK NL
Sbjct: 238 YPIAELLEACTRYQASAPRDFITFEYCMLDGVNDQPAHARQLVALVQAHAARGLSCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S ++ FAKILM++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLKRSDMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|293604539|ref|ZP_06686944.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
gi|292817120|gb|EFF76196.1| cfr family radical SAM enzyme [Achromobacter piechaudii ATCC 43553]
Length = 384
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 258/357 (72%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L ++ I+
Sbjct: 8 NLLGLDGSALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTDLAREFRSQLASNCRIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSADGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS----QGKRQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + ++ S + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI + R+ + CK
Sbjct: 248 LNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQLR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 360
>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
gi|123760407|sp|Q47BR3.1|RLMN_DECAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
Length = 364
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 254/352 (72%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + E GE PFRAKQ+ +WIH+ GV+DF+ MTD++ SLR+KLK +
Sbjct: 4 NLLDFDGESLTAWFAEQGEKPFRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKAKAVVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD++S DGTRK++ V N +ETVFIPE +R TLCISTQ GCA++C FCSTG+Q
Sbjct: 64 PPAVVSDKLSDDGTRKFLIDVGNGNAVETVFIPEDDRGTLCISTQAGCALDCAFCSTGKQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQLW L +R I+N+V+MGMGEPL N+++++ AL
Sbjct: 124 GFNRNLSVAEIIGQLWQANHALGAVHG------DERVISNVVLMGMGEPLANFENSVAAL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+L D+AYGLSRR + +STSG++P++D+L ECPV LAVSLHA N+ LR++LVPI++KY
Sbjct: 178 KLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECPVALAVSLHAPNDKLRDQLVPINQKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC RY+ +PR ITFEY ML GINDTD HA EL++L++ CK NLIP
Sbjct: 238 PLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALVKS----VHCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S S R++ FA ILM +GI T RK RG+DI+AACGQL+G++
Sbjct: 294 FNPFPGSPFRRSPAERVRHFADILMQAGIVTTTRKTRGDDIDAACGQLAGQV 345
>gi|359798970|ref|ZP_09301539.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
arsenitoxydans SY8]
gi|359363108|gb|EHK64836.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
arsenitoxydans SY8]
Length = 384
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 257/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGSALSDLVGQWGGKPFRARQLQRWMHQRGADSFDAMTDLAREFRSQLATHCRIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSTDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS----QGKRQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + ++ S + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI + R+ + CK
Sbjct: 248 LNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQLR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 360
>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
gi|123164823|sp|Q12AB5.1|RLMN_POLSJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
Length = 382
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/354 (55%), Positives = 250/354 (70%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C+ LGE FRA QL +WIH+ G SDF +MTDL+ SLR+KL S +I
Sbjct: 3 ANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S S DGT KW+F V ++IE VFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 QGPKVVSRHDSADGTIKWLFDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLTTGEIVSQLWFAEHFLRQHLGRQ-----ERVISNVVMMGMGEPLQNYSQLVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PMID+LA++CPV LAVSLHA + LR+ LVP++KK
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-SCKINL 299
YP+ EL+ AC RY +PR ITFEYCML G+ND HA +L++LM+ + SCK NL
Sbjct: 238 YPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S ++ FAKILM++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|393757562|ref|ZP_10346386.1| radical SAM superfamily protein 2 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165254|gb|EJC65303.1| radical SAM superfamily protein 2 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 382
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/356 (55%), Positives = 249/356 (69%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L P + V + G PFRA+QLQ+WIH+ DF +MTDL+ R++L +
Sbjct: 8 NLLGLGPEQLVELVAQWGGKPFRARQLQRWIHQRQQDDFGQMTDLAREFREQLTAHCLVT 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + + IS DGTRKW+F V N +E VFIPE +R TLCIS+Q GC + C FCSTG Q
Sbjct: 68 APSMSHEHISADGTRKWLFDVGSNNAVEAVFIPEDDRGTLCISSQAGCTVACPFCSTGYQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKL-RREKNIKINSQGK---RQITNIVMMGMGEPLLNYKST 177
GF RNLT EIIGQLW L + +I + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLTTAEIIGQLWYARRALLSAPETARIGDAAQTSTRVISNVVMMGMGEPLLNYDQV 187
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+GAL+L+L D+AYGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR++LVP+
Sbjct: 188 LGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDALRDRLVPL 247
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKYPL EL+ AC+RY+ ++PR ITFEY ML GINDTD HA EL+ + R + CK
Sbjct: 248 NKKYPLAELLDACNRYLEHAPRDFITFEYIMLDGINDTDQHAQELLDIAR----IVRCKF 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S +R+K FA+ LM+ G+ T+RK RG+DI AACGQL+G I
Sbjct: 304 NLIPFNPFPQSGLKRSSAARVKQFAQRLMDGGVVTTVRKTRGDDIAAACGQLAGDI 359
>gi|33593205|ref|NP_880849.1| hypothetical protein BP2201 [Bordetella pertussis Tohama I]
gi|384204502|ref|YP_005590241.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS]
gi|410419762|ref|YP_006900211.1| hypothetical protein BN115_1973 [Bordetella bronchiseptica MO149]
gi|427821310|ref|ZP_18988373.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|81578506|sp|Q7VWK8.1|RLMN_BORPE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33563580|emb|CAE42479.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332382616|gb|AEE67463.1| hypothetical protein BPTD_2167 [Bordetella pertussis CS]
gi|408447057|emb|CCJ58729.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|410572310|emb|CCN20582.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
Length = 382
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|427821838|ref|ZP_18988900.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|410587103|emb|CCN02133.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 382
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLAREFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|412338305|ref|YP_006967060.1| hypothetical protein BN112_0980 [Bordetella bronchiseptica 253]
gi|408768139|emb|CCJ52898.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
Length = 382
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAVDTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|422321702|ref|ZP_16402747.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans C54]
gi|317403336|gb|EFV83849.1| ribosomal RNA large subunit methyltransferase N [Achromobacter
xylosoxidans C54]
Length = 384
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 257/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L + I+
Sbjct: 8 NLLGLDGSALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTDLARDFRGQLASRCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALAVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS----QGKRQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + ++ S R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATDDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI + R+ + CK
Sbjct: 248 LNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHARELIHIARQIR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 360
>gi|421482988|ref|ZP_15930567.1| radical SAM superfamily protein 2 [Achromobacter piechaudii HLE]
gi|400198792|gb|EJO31749.1| radical SAM superfamily protein 2 [Achromobacter piechaudii HLE]
Length = 384
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 257/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L + I+
Sbjct: 8 NLLGLDGSALSELVGQWGGKPFRARQLQRWMHQRGADSFDAMTDLAREFRGQLASHCRIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSTDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS----QGKRQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + ++ S + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADIGTARLESAKATEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI + R+ + CK
Sbjct: 248 LNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQLR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 360
>gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50]
gi|427814221|ref|ZP_18981285.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|81579923|sp|Q7WHM8.1|RLMN_BORBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|410565221|emb|CCN22774.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 382
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804]
gi|205829671|sp|A9IK57.1|RLMN_BORPD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii]
Length = 381
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/356 (54%), Positives = 255/356 (71%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + + G PFRA+QLQ+WIH+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSDLVGQWGGKPFRARQLQRWIHQRGADSFDAMTDLARDFRGQLAQQCRIQ 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLC+S+Q GCA+NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCVSSQAGCAVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGK---RQITNIVMMGMGEPLLNYKST 177
GF RNLT EIIGQLW + L + ++ G R ++N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLTSSEIIGQLWWAKRVLEADAGTARLGGAGNDDTRVVSNVVMMGMGEPLLNYDQL 187
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+++CPV LAVSLHA + LR++LVP+
Sbjct: 188 LPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCPVALAVSLHAPTDALRDELVPL 247
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKYPL EL+ AC RY+ +PR ITFEYCML GINDTD HA LI + R+ + CK+
Sbjct: 248 NKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHARALIQVARQVR----CKL 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 NLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 359
>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
gi|205829800|sp|A1VNF1.1|RLMN_POLNA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 382
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/354 (55%), Positives = 256/354 (72%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD +C++LG+ FRA QL +WIH+ G SDF +MTDL+ SLR+KL S +I
Sbjct: 3 TNLLDFDLEGLAAFCEQLGQKRFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAVSAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ +++S S DGT KW+F V ++IETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 QGLNVVSRHESADGTIKWLFDVGAGDVIETVFIPETDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEII QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLTTGEIISQLWFAEHFLRKHLG-----RNERVISNVVMMGMGEPLQNYSQLLPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LK++L+DH YGLSRR V +STSG++PMID+LA++CPV LAVSLHA + LR+ LVP++KK
Sbjct: 178 LKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRSNLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI-LTSCKINL 299
YP+ EL+ AC RY + +PR ITFEYCML G+ND HA +L++LM+ + SCK NL
Sbjct: 238 YPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALMKTHAANGLSCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S ++ FAKILM++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLLRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAACGQLAGDV 351
>gi|407938377|ref|YP_006854018.1| radical SAM protein [Acidovorax sp. KKS102]
gi|407896171|gb|AFU45380.1| radical SAM protein [Acidovorax sp. KKS102]
Length = 370
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 259/353 (73%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ +C+ LGE FRA QL +WIH+ G SDF+ M+DL+ +LR KLK +
Sbjct: 3 TNLLEFDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDAMSDLAKALRDKLKGCARV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A ++S+ +S DGT KW+F V N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 EALPVISEHVSSDGTVKWLFDVGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR K ++ + +R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEIVAQLWFAEHSLR--KRLQTD---ERVISNVVMMGMGEPLQNYSALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LK++L DH YGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDPLRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC+RY+ ++PR ITFEYCML G+ND HA +LI L+++ I CK NLI
Sbjct: 238 YPISELLDACNRYLQHAPRDFITFEYCMLDGVNDQVEHARQLIELVKRTGI--RCKFNLI 295
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S +++++ FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 296 PFNPFPASGLLRSPHNQVQAFAKMLSDAGIITTVRKTRGDDIDAACGQLAGDV 348
>gi|424776103|ref|ZP_18203088.1| radical SAM superfamily protein 2 [Alcaligenes sp. HPC1271]
gi|422888563|gb|EKU30949.1| radical SAM superfamily protein 2 [Alcaligenes sp. HPC1271]
Length = 382
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 251/357 (70%), Gaps = 9/357 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L P + V + G PFRA+QLQ+WIH+ DF +MTDL+ R++L + +
Sbjct: 7 TNLLGLGPEQLVELVAQWGGKPFRARQLQRWIHQRQQDDFGQMTDLAREFREQLTANCVV 66
Query: 62 KAPHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
AP + + IS DGTRKW+F V N +E VFIPE +R TLCIS+Q GC + C FCSTG
Sbjct: 67 TAPSMSHEHISTDGTRKWLFDVGSNNAVEAVFIPEDDRGTLCISSQAGCTVACPFCSTGY 126
Query: 121 QGFVRNLTVGEIIGQLWVTEFKL-RREKNIKINSQGK---RQITNIVMMGMGEPLLNYKS 176
QGF RNLT EIIGQLW L + +I + R I+N+VMMGMGEPLLNY
Sbjct: 127 QGFNRNLTTSEIIGQLWFARRALLNAPETARIGDAEQTSTRVISNVVMMGMGEPLLNYDQ 186
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+GAL+L+L D+AYGLSRR V +STSG++PM+D+LA++CPV LAVSLHA N+ LR++LVP
Sbjct: 187 VLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLAKDCPVALAVSLHAPNDALRDRLVP 246
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPL EL+ AC+RY+ ++PR ITFEY ML GINDTD HA EL+ + R + CK
Sbjct: 247 LNKKYPLAELLDACNRYLEHAPRDFITFEYIMLDGINDTDQHAQELLDIAR----IVRCK 302
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S +R+K FA+ LM+ G+ T+RK RG+DI AACGQL+G I
Sbjct: 303 FNLIPFNPFPQSGLKRSSAARVKQFAQRLMDGGVVTTVRKTRGDDIAAACGQLAGDI 359
>gi|410473483|ref|YP_006896764.1| hypothetical protein BN117_2930 [Bordetella parapertussis Bpp5]
gi|408443593|emb|CCJ50263.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 382
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSKLVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|237654050|ref|YP_002890364.1| radical SAM protein [Thauera sp. MZ1T]
gi|237625297|gb|ACR01987.1| radical SAM enzyme, Cfr family [Thauera sp. MZ1T]
Length = 382
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/364 (53%), Positives = 253/364 (69%), Gaps = 20/364 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V + LGE PFRA+Q+ +W+H G DF+ MTD++ SLR KLK+ I+
Sbjct: 8 NLLDFDVDGLVAWFAGLGEKPFRARQVMRWMHHEGCDDFDAMTDVAKSLRAKLKDLAVIR 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + D IS DGTRKW+ V N +ETVFIPE +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 68 PPVPVRDSISADGTRKWLLDVGNANAVETVFIPETSRGTLCVSSQAGCALDCAFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVT------------EFKLRREKNIKINSQGKRQITNIVMMGMGE 169
GF RNL+ EIIGQLW+ E E K N R I+N+VMMGMGE
Sbjct: 128 GFNRNLSAAEIIGQLWLANKLLGAARADAEEHATDLEAGEKDNG---RIISNVVMMGMGE 184
Query: 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNN 229
PL N+ + + AL+L+L DHAYGLSRR V +STSGI+P +D+L ECPV LAVSLHASN+
Sbjct: 185 PLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECPVALAVSLHASNDA 244
Query: 230 LRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKN 289
LR++LVPI++KYPL+EL+ AC RY+ +PR +TFEY ML G+ND+D HA EL++L+R
Sbjct: 245 LRDRLVPINQKYPLRELMAACQRYLERAPRDFVTFEYVMLEGVNDSDAHARELVALVRD- 303
Query: 290 KILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
T CK NLIPFN FP+S S RI+ FA IL+++GI T RK RG+D++AACGQL
Sbjct: 304 ---TPCKFNLIPFNPFPDSGFQRSPAERIRRFAGILIDAGIVTTTRKTRGDDVDAACGQL 360
Query: 350 SGKI 353
+G++
Sbjct: 361 AGQV 364
>gi|311105357|ref|YP_003978210.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
gi|310760046|gb|ADP15495.1| radical SAM superfamily protein 2 [Achromobacter xylosoxidans A8]
Length = 384
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/357 (54%), Positives = 256/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGSALSELVGKWGGKPFRARQLQRWMHQRGADSFDAMTDLARDFRGQLAQHCRIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSTDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE-KNIKINS----QGKRQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + ++ S + R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLKTSEIIGQLWWAKRVLEADIGTARLESARATEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI + R+ + CK
Sbjct: 248 LNKKYPLKELLAACERYLAFAPRDFITFEYCMLDGINDTDQHAKELIQIARQLR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPESGLKRSNSARVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 360
>gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822]
gi|81579190|sp|Q7W6P5.1|RLMN_BORPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 382
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CP+ LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|351731457|ref|ZP_08949148.1| radical SAM protein [Acidovorax radicis N35]
Length = 374
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/354 (53%), Positives = 255/354 (72%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ +C++LGE FRA QL +WIH+ G SDF+ M+DL+ +LR KLK +
Sbjct: 4 TNLLEFDLDGLAAFCQQLGEKRFRATQLFRWIHQRGASDFDAMSDLAKALRDKLKGCARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A ++S+ +S DGT KW+F V N +E VFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 64 EALPVVSEHVSSDGTVKWLFDVGDGNAVEAVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEII QLW E LR+ ++ S+ R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFSRNLTTGEIIAQLWFAEHSLRQ----RLKSE-DRVISNVVMMGMGEPLQNYSALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRTMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDPLRDNLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL-TSCKINL 299
YP+ EL+ AC+RY+ ++PR ITFEYCML G+ND HA +LI L++ + CK NL
Sbjct: 239 YPIDELLAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKPARGEGVRCKFNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S S++ FAK+L +GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 IPFNPFPASGLLRSPQSQVLAFAKVLSEAGIVTTVRKTRGDDIDAACGQLAGDV 352
>gi|388567418|ref|ZP_10153852.1| radical SAM protein [Hydrogenophaga sp. PBC]
gi|388265440|gb|EIK90996.1| radical SAM protein [Hydrogenophaga sp. PBC]
Length = 383
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/354 (54%), Positives = 253/354 (71%), Gaps = 6/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C+ LGE FRA QL +WIH+ G SDF++MTDL+ SLR+KL I+
Sbjct: 4 NLLDFDLEGLAAFCEGLGEKRFRAVQLFRWIHQRGASDFSQMTDLARSLREKLPGVARIE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
++S Q S DGT KW+F V N +ETVFIPE +R TLC+S+Q GCA+ C FCSTG Q
Sbjct: 64 GLKVLSRQDSADGTIKWLFDVGDGNAVETVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEI+ QLW EF LR + +N G+R ITN+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLTTGEILAQLWYAEFFLR----VFLNRPGERVITNVVMMGMGEPLQNYHALVPAL 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K++L DHAYGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA + LR+ LVP+++KY
Sbjct: 180 KVMLDDHAYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPFDPLRDDLVPLNRKY 239
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL-TSCKINLI 300
P+ EL+ AC RY+ +PR +TFEYCML G+ND HA L+ L+R++ K+NLI
Sbjct: 240 PIAELLDACLRYLPAAPRDFVTFEYCMLDGVNDQPEHAQALLRLLREHGGRGVPAKLNLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S L CS + ++ F ++L G+ TIRK RG+DI+AACGQL+G +L
Sbjct: 300 PFNPFPDSGLRCSPRAVVQRFGQLLNEGGVVTTIRKTRGDDIDAACGQLAGDVL 353
>gi|456063410|ref|YP_007502380.1| radical SAM protein [beta proteobacterium CB]
gi|455440707|gb|AGG33645.1| radical SAM protein [beta proteobacterium CB]
Length = 397
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/350 (55%), Positives = 252/350 (72%), Gaps = 14/350 (4%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
Y L E PFRAKQL +WIH+ GVSD N M+DL+ S R L + + + ++ D+ + D
Sbjct: 4 YVAGLNEKPFRAKQLMQWIHQRGVSDINDMSDLAKSFRATLLDKAEVLSLPVIKDEHAAD 63
Query: 75 GTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
GTRKW+ +V N +E+VFIPE +R TLCIS+Q GCA+NC FCSTG QGF RNLT GEII
Sbjct: 64 GTRKWLLNVGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFSRNLTAGEII 123
Query: 134 GQLWVTEFKLRREKNI-----KINSQG----KRQITNIVMMGMGEPLLNYKSTIGALKLI 184
GQLW E LR + N K + G R I+N+V+MGMGEPLLNY + + AL+L+
Sbjct: 124 GQLWFAEHLLRTDPNAVRRIEKYPTPGWEHTGRVISNVVLMGMGEPLLNYDNVVTALRLM 183
Query: 185 LSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLK 244
L D AYGLSRR V +STSG++PMID+LAQ+CPV LAVSLHA N+ LR++LVP+++KYPL+
Sbjct: 184 LDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDKLRDQLVPLNQKYPLR 243
Query: 245 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNC 304
EL+ AC RY+ ++PR +TFEYCML G+ND+DI A EL+ L+ K CKINLIPFN
Sbjct: 244 ELLAACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRLLANIK----CKINLIPFNP 299
Query: 305 FPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FP S L S R+ FA IL+++G+ T+RK RG+DI AACGQL+G ++
Sbjct: 300 FPESGLKRSSAQRVHAFASILLDAGMVATVRKTRGDDIAAACGQLAGDVV 349
>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
Length = 369
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/352 (53%), Positives = 253/352 (71%), Gaps = 7/352 (1%)
Query: 4 LLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKA 63
+LD YC++LGE FRA QL +WIH+ G SDF++MTDL+ SLR+KLK+ +I A
Sbjct: 1 MLDFDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITA 60
Query: 64 PHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
++++ +S DGT KW+F V N +E+VFIPE +R TLC+S+Q GCA+ C FCSTG QG
Sbjct: 61 LPVVTEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQG 120
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL GEI+ QLW E LR+ + R I+N+VMMGMGEPL NY + + AL+
Sbjct: 121 FSRNLNTGEILAQLWYAEHSLRKRFGTE-----DRIISNVVMMGMGEPLQNYSALVPALR 175
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L DH YGLSRR V +STSG++PM+D+L+Q+C V LAVSLHA N+ LR+ LVP++KKYP
Sbjct: 176 VMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKKYP 235
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS-CKINLIP 301
+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R S CK NLIP
Sbjct: 236 IAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGKSWCKFNLIP 295
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L+ S ++R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 296 FNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQLAGDV 347
>gi|334129939|ref|ZP_08503742.1| Putative Fe-S-cluster redox enzyme [Methyloversatilis universalis
FAM5]
gi|333444975|gb|EGK72918.1| Putative Fe-S-cluster redox enzyme [Methyloversatilis universalis
FAM5]
Length = 369
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/354 (53%), Positives = 253/354 (71%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL F ++ LGE PFRA+Q+ +WIH+ G DF+ M+D++ SLR KL + +
Sbjct: 4 TNLLQFDAEGFADFFTGLGEKPFRARQVMRWIHRNGEGDFDAMSDVAKSLRAKLSDIACV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+AP + D S DGTRKW+ V N +ETVFIPE+ R TLCISTQ GCA++C FCSTG+
Sbjct: 64 QAPVPVRDSTSTDGTRKWLIDVGAGNAVETVFIPEERRGTLCISTQAGCALDCAFCSTGK 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL V EIIGQLW+ L + + + G+R I+N+VMMGMGEPL N+ +T+ A
Sbjct: 124 QGFNRNLEVSEIIGQLWLANRALGAVRGGE--NDGERVISNVVMMGMGEPLANFDATVAA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LKL+L D+AYGLSRR V +STSGI+P +D+L CPV LAVSLHA N+ LR++LVPI+KK
Sbjct: 182 LKLMLDDNAYGLSRRRVTVSTSGIVPAMDRLRDACPVALAVSLHAPNDALRDELVPINKK 241
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+EL+ AC RY+ +PR ITFEY ML G+ND+D HA +L+ + R+ CK NLI
Sbjct: 242 YPLRELLAACVRYLDRAPRDFITFEYVMLDGVNDSDEHARQLVDIARQ----VPCKYNLI 297
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + S RI+ F++IL+ +GI T RK RG+D++AACGQL+G++L
Sbjct: 298 PFNPFPQAPFGRSSKERIRRFSEILIEAGIVTTTRKTRGDDVDAACGQLAGQVL 351
>gi|365093283|ref|ZP_09330349.1| radical SAM protein [Acidovorax sp. NO-1]
gi|363414457|gb|EHL21606.1| radical SAM protein [Acidovorax sp. NO-1]
Length = 373
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/354 (53%), Positives = 256/354 (72%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ +C++LGE FRA QL +WIH+ G SDF+ M+DL+ +LR KLK +
Sbjct: 3 TNLLEFDLDGLAAFCQQLGEKRFRATQLFRWIHQRGASDFDAMSDLAKALRDKLKGCARV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A ++S+ +S DGT KW+F V N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 EALPVISEHVSTDGTVKWLFDVGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ ++ S G R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEIVAQLWFAEHSLRQ----RLQS-GDRVISNVVMMGMGEPLQNYSALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+LA +CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLALDCPVALAVSLHAPNDPLRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK-ILTSCKINL 299
YP++EL+ AC+RY+ ++PR ITFEYCML G+ND HA +LI L++ + CK NL
Sbjct: 238 YPIEELMAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIELVKPARGAGVRCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +++ FAK+L +GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLLRSPQNQVLAFAKVLSEAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
Length = 367
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 254/355 (71%), Gaps = 5/355 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLL+ + + + + GE PFRAKQL +W+H FGV DF +MTD++ +LR+KL
Sbjct: 1 MVNLLNYNQKQLAQWFADRGEKPFRAKQLMRWMHHFGVHDFEQMTDIAKNLREKLAVDAE 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P + Q+S DGTRKW+ N IETVFIPE +R TLC+S+QVGCA+ C FCSTG
Sbjct: 61 ITLPTVQLAQVSNDGTRKWLIGTDTANSIETVFIPEDDRGTLCVSSQVGCALECTFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
RQGF RNL+V EIIGQ+ + LR+E + R I+N+VMMGMGEPL NY + +
Sbjct: 121 RQGFNRNLSVAEIIGQVAIANQTLRQEPGYDMLPANDRIISNVVMMGMGEPLANYDNVVT 180
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++++L D AYGLSRR V LSTSG++P +D+L ++CPV LAVSLHA N+ LR+ +VPI+K
Sbjct: 181 AMQIMLDDSAYGLSRRRVTLSTSGMVPAMDRLKEDCPVALAVSLHAPNDALRDVIVPINK 240
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPLKEL+ AC+RY+ +PR +TFEY ML G+NDT HA +L+ L++ SCK NL
Sbjct: 241 KYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLELVKN----VSCKFNL 296
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FPNS SK + +++F ILM +G VT+RK RG+DI+AACGQL+GK+L
Sbjct: 297 IPFNPFPNSGYDTSKPNHVRVFRDILMQAGYVVTVRKTRGDDIDAACGQLAGKVL 351
>gi|337279529|ref|YP_004619001.1| hypothetical protein Rta_18910 [Ramlibacter tataouinensis TTB310]
gi|334730606|gb|AEG92982.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 385
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 251/354 (70%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C+ LGE FRA QL +WIH+ G ++F++M+DL+ SLR+KLK + +
Sbjct: 4 ANLLDFDLDGLAAFCETLGEKRFRATQLFRWIHQRGCAEFDQMSDLAKSLREKLKYAARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ I++ S DGT KW+F V + N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 QGLAIITQHESADGTIKWLFDVGQGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LRR +R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFARNLSTGEIVAQLWFAEHYLRRHLGTS-----ERVISNVVMMGMGEPLQNYSALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PMID+L Q+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRTMLDDHGYGLSRRRVTVSTSGVVPMIDRLGQDCPVALAVSLHAPNDELRDHLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL-TSCKINL 299
YPL EL+ AC+RY+ ++PR ITFEYCML G+ND HA +LI L+R + SCK+NL
Sbjct: 239 YPLAELLDACNRYLEHAPRDFITFEYCMLDGVNDQPEHAQQLIELVRGHAGRGVSCKLNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N + FA+ L+N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 IPFNPFPQSGLTRSPNKAVSAFAEKLINAGIVTTVRKTRGDDIDAACGQLAGDV 352
>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
Length = 369
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/352 (53%), Positives = 253/352 (71%), Gaps = 7/352 (1%)
Query: 4 LLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKA 63
+LD YC++LGE FRA QL +WIH+ G SDF++MTDL+ SLR+KLK+ +I A
Sbjct: 1 MLDFDLEGLTAYCEQLGEKRFRATQLFRWIHQRGASDFDQMTDLAKSLREKLKSRAHITA 60
Query: 64 PHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
++++ +S DGT KW+F V N +E+VFIPE +R TLC+S+Q GCA+ C FCSTG QG
Sbjct: 61 LPVVTEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCVSSQAGCAVGCRFCSTGHQG 120
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL GEI+ QLW E LR+ + R I+N+VMMGMGEPL NY + + AL+
Sbjct: 121 FSRNLNTGEILAQLWYAEHSLRKRFGTE-----DRIISNVVMMGMGEPLQNYSALVPALR 175
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L DH YGLSRR V +STSG++PM+D+L+Q+C V LAVSLHA N+ LR+ LVP++KKYP
Sbjct: 176 VMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCAVALAVSLHAPNDPLRDNLVPLNKKYP 235
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS-CKINLIP 301
+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R S CK NLIP
Sbjct: 236 IAELLDACERYLEFAPRDFITFEYCMLDGVNDQLEHARQLIELVRARGDGKSWCKFNLIP 295
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L+ S ++R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 296 FNPFPASGLLRSPSARVTEFATLLSNAGIVTTVRKTRGDDIDAACGQLAGDV 347
>gi|395003902|ref|ZP_10387999.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
gi|394318186|gb|EJE54646.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
Length = 396
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 257/354 (72%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ +C++LGE FRA QL +WIH+ G DF+ M+DL+ +LR KL+ ++
Sbjct: 26 ANLLEFDLDGLAAFCEKLGEKRFRATQLFRWIHQRGAHDFDAMSDLAKALRDKLRGCAHV 85
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A ++++ +S DGT KW+F V N +E VFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 86 QALPVITEHVSADGTVKWLFDVGGGNAVEAVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 145
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + +R I+N+VMMGMGEPL NY + + A
Sbjct: 146 QGFSRNLTTGEIVAQLWFAEHALRKRLG-----KDERVISNVVMMGMGEPLQNYSALVPA 200
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DHAYGLSRR V +STSG++PMID+LAQ+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 201 LRVMLDDHAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDPLRDNLVPLNRK 260
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL-TSCKINL 299
YP++EL+ AC+RY+ ++PR ITFEYCML G+ND HA +LI L++ + CK NL
Sbjct: 261 YPIEELLAACNRYLEHAPRDFITFEYCMLDGVNDQIEHARQLIELVKPARGEGVRCKFNL 320
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +++++ F K+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 321 IPFNPFPASGLLRSSHAQVQAFGKLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 374
>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
Length = 363
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/355 (55%), Positives = 250/355 (70%), Gaps = 11/355 (3%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLDL Y E+GE PFRAKQL +WI++ G SDF MTD++ LR KL S
Sbjct: 1 MQNLLDLDAHALTAYFTEMGEKPFRAKQLLRWIYQVGESDFAAMTDIAAVLRNKLAQSAC 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+ +++S DGTRKW+ V N +E V+IPE R TLCIS+Q GCA++C FCSTG
Sbjct: 61 ITVPDIVREELSDDGTRKWLLSVGSGNAVEAVYIPESARGTLCISSQAGCALDCSFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTV EIIGQLW +L + NS+G ++N+VMMGMGEPLLN+ +T+
Sbjct: 121 KQGFNRNLTVAEIIGQLWWANHQLGK------NSEGNWPVSNVVMMGMGEPLLNFDNTVS 174
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D AYGLSRR V +STSGI+P +D+L +ECPV LAVSLHA N+ LR+KLVP+++
Sbjct: 175 ALRLMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECPVALAVSLHAPNDALRDKLVPVNQ 234
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPLKEL+ AC RY+ +PR ITFEY ML G+NDT HA EL+ L++ T CK NL
Sbjct: 235 KYPLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQHAHELVRLVKD----TPCKFNL 290
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP S S+ I+ F +LM + I T RK RG+DI AACGQL+G++L
Sbjct: 291 IPFNPFPLSPYKRSRPDAIQRFRDVLMQADIITTTRKTRGDDIAAACGQLAGQVL 345
>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
gi|205829923|sp|A1WE19.1|RLMN_VEREI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
Length = 391
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 249/353 (70%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++C LGE FRA QL +WIH+ G SDF+ M+DL+ +LR KLK +
Sbjct: 4 TNLLEFDRDGLADFCARLGEKRFRATQLFRWIHQRGASDFDAMSDLARALRDKLKGCARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+AP ++S Q S DG+ KW+F V N +E VFIPE R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 QAPPVISGQASADGSVKWLFDVGAGNAVEAVFIPEDERGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEII QLW E LRR + R I+N+VMMGMGEPL N + + A
Sbjct: 124 QGFSRNLSSGEIIAQLWFAEHALRRRLKTE-----DRVISNLVMMGMGEPLQNLAALLPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PMID+LA++CPV LAVSLHA N+ LR++LVP+++K
Sbjct: 179 LRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSLHAPNDALRDQLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +L+ L+ + I CK NLI
Sbjct: 239 YPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVELVGRAAI--RCKFNLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S + +I FA++L +GI T+RK RG+DI AACGQL+G +
Sbjct: 297 PFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIAAACGQLAGDV 349
>gi|408415653|ref|YP_006626360.1| hypothetical protein BN118_1739 [Bordetella pertussis 18323]
gi|401777823|emb|CCJ63164.1| conserved hypothetical protein [Bordetella pertussis 18323]
Length = 382
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/357 (54%), Positives = 251/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AY LSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYSLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++F + LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFVQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
gi|123078840|sp|Q1H0U6.1|RLMN_METFK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
KT]
Length = 362
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 251/352 (71%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y + +GE PFRAKQ+ +W+H FGVSDF +MTD++ +LR+KL +
Sbjct: 4 NLLNFNQAALAEYFQGIGEKPFRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAKEAVVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +QIS DGTRKW+ V N +ETVFIPE +R TLC+S+QVGCA++C FCSTGRQ
Sbjct: 64 PPSVHLEQISEDGTRKWLIDVGAGNGVETVFIPEDDRGTLCVSSQVGCALDCTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQLWV L R+ +G R I+N+VMMGMGEPL N+ + + A+
Sbjct: 124 GFNRNLSVSEIIGQLWVANKALGRD------PKGDRIISNVVMMGMGEPLANFDNVVAAM 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D AYGLSRR V LSTSG++P +D+L +ECPV LAVSLHA N+ LR+++VPI++KY
Sbjct: 178 NIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECPVALAVSLHAPNDALRDEIVPINRKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ +L+ AC RY+ +PR +TFEY ML G+NDT HA +L+++++ CK NLIP
Sbjct: 238 PIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIVQD----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS SK I+ F ILM +G VT RK RG DI+AACGQL+GK+
Sbjct: 294 FNPFPNSGYDTSKPDNIRRFRDILMQAGYVVTTRKTRGEDIDAACGQLAGKV 345
>gi|372489753|ref|YP_005029318.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Dechlorosoma suillum PS]
gi|359356306|gb|AEV27477.1| 23S rRNA m2A2503 methyltransferase [Dechlorosoma suillum PS]
Length = 367
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/354 (53%), Positives = 253/354 (71%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + GE PFRA+Q+ +W+H FG +DF+ MTD++ SLR+ LK +
Sbjct: 1 MQNLLDFDAEGLTAWFAARGEKPFRARQVLRWMHHFGQADFDAMTDIAKSLREMLKANAV 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
+ P I+SD++S DGTRK++F V N +ETVFIPE +R TLCISTQ GCA++C FCSTG
Sbjct: 61 VLPPAIVSDKLSDDGTRKFLFDVGNGNAVETVFIPEDDRGTLCISTQAGCALDCAFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQLW L + + + +R I+N+V+MGMGEPL N+++ +
Sbjct: 121 KQGFNRNLAVSEIIGQLWQANRALGVDP--RHPDKAERIISNVVLMGMGEPLANFEAAVA 178
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V +STSG++P +D+L ECPV LAVSLHA N+ LR++LVPI++
Sbjct: 179 ALKLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRDECPVALAVSLHAPNDKLRDELVPINQ 238
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP+ EL+ AC RY+ +PR +TFEY ML G+ND+D HA EL+++ R CK NL
Sbjct: 239 KYPIAELMAACQRYLEKAPRDFVTFEYVMLDGVNDSDAHARELLAITRD----VPCKFNL 294
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S SK RI+ FA IL+ +G+ T RK RG+DI+AACGQL+G++
Sbjct: 295 IPFNPFPGSPFRRSKAERIRRFADILIQAGVVTTTRKTRGDDIDAACGQLAGQV 348
>gi|332284656|ref|YP_004416567.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
gi|330428609|gb|AEC19943.1| hypothetical protein PT7_1403 [Pusillimonas sp. T7-7]
Length = 386
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/360 (53%), Positives = 253/360 (70%), Gaps = 13/360 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + + G PFRAKQLQ+W+H+ G F+ MTDL+ R +L I
Sbjct: 8 NLLGLDTPALTDLVGQWGGKPFRAKQLQRWVHQRGADSFDDMTDLAREFRLQLAEHCSIA 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + +Q S DGTRKW+F V K N +E VFIPE +R TLCIS+Q GC + C FCSTG Q
Sbjct: 68 APPVSIEQRSADGTRKWLFDVGKNNAVEAVFIPEDDRGTLCISSQAGCTVACPFCSTGYQ 127
Query: 122 GFVRNLTVGEIIGQLW----VTEFKLRREKNIKINSQGK----RQITNIVMMGMGEPLLN 173
GF RNLT EIIGQLW V + ++ + + +Q R I+N+VMMGMGEPLLN
Sbjct: 128 GFNRNLTTAEIIGQLWHARRVLQSDMQSARTVSTETQTAPDPARVISNVVMMGMGEPLLN 187
Query: 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNK 233
Y +GAL+L+L D+AYGLSRR V +STSG++PM+D+L ++CPV LAVSLHA N+ LR+K
Sbjct: 188 YDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLGRDCPVALAVSLHAPNDALRDK 247
Query: 234 LVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
LVP+++K+PL EL+ AC+RY+ ++PR ITFEY ML G+NDTD HA ELI++ ++ +
Sbjct: 248 LVPLNRKHPLAELLAACNRYLEHAPRDFITFEYIMLDGVNDTDQHARELITIAQQVR--- 304
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
CK NLIPFN FP S L S +R+++FA+ LM++GI T+RK RG+DI AACGQL+G +
Sbjct: 305 -CKFNLIPFNPFPQSGLKRSPAARVRLFAQRLMDAGIVTTVRKTRGDDIAAACGQLAGDV 363
>gi|345875081|ref|ZP_08826877.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
gi|343969508|gb|EGV37720.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
Length = 362
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/353 (54%), Positives = 249/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + + + +GE PFRAKQ+ +WIH+ G SDF +MTDL+ SLR KL+ I
Sbjct: 3 TNLLNFNLQGLTEHFQAMGEKPFRAKQVLRWIHQGGASDFAEMTDLAKSLRSKLEEKAEI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ QIS DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 AVPELMTSQISSDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEPL N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPLANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L + PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMPVALAVSLHASNDEVRDEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+EL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I+IF IL +G+ VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLAGQV 345
>gi|253999428|ref|YP_003051491.1| radical SAM enzyme, Cfr family [Methylovorus glucosetrophus SIP3-4]
gi|253986107|gb|ACT50964.1| radical SAM enzyme, Cfr family [Methylovorus glucosetrophus SIP3-4]
Length = 367
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/352 (55%), Positives = 247/352 (70%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ S + Y LGE PFRAKQL +W+H FGV DF++MTD++ SLR KLK+ I
Sbjct: 4 NLLNYSQPQLAEYFHGLGEKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKDQAEIT 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I +QIS DGTRKW+ N +ETVFIPE R TLC+S+QVGCA+ C FCSTGRQ
Sbjct: 64 PPGIKLEQISEDGTRKWLIDAGTGNGVETVFIPEAERGTLCVSSQVGCALECTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EIIGQLWV L R+ +G R I+N+VMMGMGEPL N+ + + AL
Sbjct: 124 GFNRNLTVSEIIGQLWVANKALGRD------PKGDRIISNVVMMGMGEPLANFDNVVTAL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D AYGLSRR V +STSG++P +D+L + CPV LAVSLHA N+ LR+ +VPI+KKY
Sbjct: 178 NIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+KEL+ AC RY+ +PR +TFEY ML G+ND+ HA +L+ ++R CK NLIP
Sbjct: 238 PIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIVRD----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS SK I+ F +LM + VT RK RG+DI+AACGQL+GK+
Sbjct: 294 FNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLAGKV 345
>gi|417958218|ref|ZP_12601134.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
gi|343967280|gb|EGV35529.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
Length = 362
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/353 (54%), Positives = 249/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + + + +GE PFRAKQ+ +WIH+ G SDF +MTDL+ SLR KL+ I
Sbjct: 3 TNLLNFNLQGLTEHFQAMGEKPFRAKQVLRWIHQGGASDFAEMTDLAKSLRSKLEEKAEI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ QIS DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 AIPELMTSQISSDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEPL N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPLANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L + PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMPVALAVSLHASNDEVRDEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+EL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I+IF IL +G+ VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLAGQV 345
>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
25196]
gi|123768149|sp|Q2Y6F3.1|RLMN_NITMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 365
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/353 (54%), Positives = 250/353 (70%), Gaps = 7/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C E+GE PFRA+QL +WIH+ G +DF+ M+DL+ LR+KL + I+
Sbjct: 4 NLLDFDAKGLTGFCAEIGEKPFRARQLLRWIHRTGEADFDAMSDLAKGLREKLAAAAVIE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD + DGTRKW+ V N IETV+IPE +R TLCIS+QVGCA+ C FCSTGRQ
Sbjct: 64 PPKVISDHTASDGTRKWLLSVGAGNGIETVYIPETSRGTLCISSQVGCALACAFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EIIGQLW L + + +R ITNIVMMGMGEPL N+++ + +L
Sbjct: 124 GFNRNLTVAEIIGQLWWANKAL--TETFTSEAGRERPITNIVMMGMGEPLTNFENVVTSL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D+AYGLSRR V +STSGIIP +D+L + CPV LAVSLHA N+ LR++LVPI++KY
Sbjct: 182 DLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAPNDALRDQLVPINRKY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P++EL+ AC RY+ +PR ITFEY ML G+ND+ A EL+ L+R CK+NLIP
Sbjct: 242 PIRELLGACERYLQSAPRDFITFEYVMLDGVNDSVAQARELVQLVRD----IPCKLNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN FP+S S + + F +LM +G+ T+RK RG+DI AACGQL+GK+L
Sbjct: 298 FNPFPDSGFRRSSANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLAGKVL 350
>gi|326316277|ref|YP_004233949.1| radical SAM family protein [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 373
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 254/353 (71%), Gaps = 7/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C++LGE FRA QL +WIH+ G SDF +M+DL+ SLR+KL ++
Sbjct: 4 NLLDFDLDGLAAFCEQLGEKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A ++S+ +S DGT KW+F V N +E+VFIPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 64 ALPVISEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEI+ QLW E LR ++ +Q +R I+N+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLTSGEIVAQLWFAEHALR----ARLGTQ-ERVISNVVMMGMGEPLQNYTALVPAL 178
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+ +L DH YGLSRR + +STSG++PM+D+L+Q+C V +AVSLHA N+ LR++LVP+++KY
Sbjct: 179 RTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKY 238
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINLI 300
PL+EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + CK NLI
Sbjct: 239 PLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGAEGVRCKFNLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L S ++ FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 PFNPFPASGLHRSNPGQVAAFAKLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
gi|81654669|sp|Q7NS85.1|RLMN_CHRVO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 364
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 248/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + + + E+GE PFRAKQ+ +W+H+ DF+ MTDL+ SLR KL +
Sbjct: 3 TNLLDFNLDQLTQHFAEMGEKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLHERAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M+ Q S DGTRKW+ V N +ETVFIPE +R TLC+S+QVGCA+ C FCSTGR
Sbjct: 63 RVPSLMTGQASSDGTRKWLLDVGTGNGVETVFIPEDDRGTLCVSSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R ++N+VMMGMGEPL N+ + + A
Sbjct: 123 QGFNRNLSTAEIIGQLWWAN------KAMGVTPKNERVVSNVVMMGMGEPLANFDNVVSA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L DH YGLSRR V LSTSG++P +D+L +ECPV LAVSLHA N+ +R+ +VPI+KK
Sbjct: 177 MQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHAPNDAIRDVIVPINKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL EL+ AC RY+ +PR ITFEY ML G+ND HA +L+ L+R CK NLI
Sbjct: 237 YPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLELVRD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N+ I+IF +IL G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQLAGQV 345
>gi|313201450|ref|YP_004040108.1| radical sam enzyme, cfr family [Methylovorus sp. MP688]
gi|312440766|gb|ADQ84872.1| radical SAM enzyme, Cfr family [Methylovorus sp. MP688]
Length = 367
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 247/352 (70%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ S + Y LGE PFRAKQL +W+H FGV DF++MTD++ SLR KLK+ I
Sbjct: 4 NLLNYSQPQLAEYFHGLGEKPFRAKQLMRWMHHFGVHDFDQMTDIAKSLRDKLKDQAEIT 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I +QIS DGTRKW+ N +ETVFIPE R TLC+S+QVGCA+ C FCSTGRQ
Sbjct: 64 PPGIKLEQISEDGTRKWLIDAGTGNGVETVFIPEAERGTLCVSSQVGCALECTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQLWV L R+ +G R I+N+VMMGMGEPL N+ + + AL
Sbjct: 124 GFNRNLSVSEIIGQLWVANKALGRD------PKGDRIISNVVMMGMGEPLANFDNVVTAL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D AYGLSRR V +STSG++P +D+L + CPV LAVSLHA N+ LR+ +VPI+KKY
Sbjct: 178 NIMLDDSAYGLSRRRVTVSTSGMVPAMDRLREACPVALAVSLHAPNDALRDVIVPINKKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+KEL+ AC RY+ +PR +TFEY ML G+ND+ HA +L+ ++R CK NLIP
Sbjct: 238 PIKELMAACQRYLEKAPRDFVTFEYVMLDGVNDSVEHARQLLDIVRD----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS SK I+ F +LM + VT RK RG+DI+AACGQL+GK+
Sbjct: 294 FNPFPNSGYDTSKPEAIRRFRDVLMQADYVVTTRKTRGDDIDAACGQLAGKV 345
>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
gi|205829658|sp|A1TM24.1|RLMN_ACIAC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
Length = 373
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 254/353 (71%), Gaps = 7/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C++LGE FRA QL +WIH+ G SDF +M+DL+ SLR+KL ++
Sbjct: 4 NLLDFDLDGLAAFCEQLGEKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A ++S+ +S DGT KW+F V N +E+VFIPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 64 ALPVISEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEI+ QLW E LR ++ +Q +R I+N+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLTSGEIVAQLWFAEHALR----ARLGTQ-ERVISNVVMMGMGEPLQNYTALVPAL 178
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+ +L DH YGLSRR + +STSG++PM+D+L+Q+C V +AVSLHA N+ LR++LVP+++KY
Sbjct: 179 RTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKY 238
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINLI 300
PL+EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + CK NLI
Sbjct: 239 PLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGGEGVRCKFNLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L S ++ FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 PFNPFPASGLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>gi|410694045|ref|YP_003624667.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
Length = 379
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 253/353 (71%), Gaps = 6/353 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL V + G FRA+Q+ +W+H+ GV+DF M+DL+ LR+ L+ +I
Sbjct: 8 TNLLQFDRDGLVEWFGRHGHAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLREHAHI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++S+Q S DGT KW+F V + N +E VFIPE RNTLC+S+Q GCA+NC FCSTG
Sbjct: 68 AALPVLSEQRSADGTVKWLFDVGQGNAVEAVFIPEAQRNTLCVSSQAGCAVNCKFCSTGH 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL EI+ QLW EF +RRE + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 128 QGFSRNLQTWEILAQLWHAEFTMRRELGLP---GGERAISNVVMMGMGEPLQNYSALVPA 184
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L D YGLSRR V +STSG++PMID+L+Q+CPV LAVSLHA + LR++LVP+++K
Sbjct: 185 LRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAPVDALRDELVPLNRK 244
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL EL+ AC RY+ ++PR ITFEYCML G+NDT A +L+ L+R ++ +CK NLI
Sbjct: 245 YPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRLVRAAQV--NCKFNLI 302
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L S +R+ FA++L+++G+ T+RK RG+DI+AACGQL+G++
Sbjct: 303 PFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQLAGEV 355
>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
Length = 379
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 253/353 (71%), Gaps = 6/353 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL V + G FRA+Q+ +W+H+ GV+DF M+DL+ LR+ L+ +I
Sbjct: 8 TNLLQFDRDGLVEWFGRHGHAAFRARQVFRWMHQKGVADFEAMSDLAKPLRQFLREHAHI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++S+Q S DGT KW+F V + N +E VFIPE RNTLC+S+Q GCA+NC FCSTG
Sbjct: 68 AALPVLSEQRSADGTVKWLFDVGQGNAVEAVFIPEAQRNTLCVSSQAGCAVNCKFCSTGH 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL EI+ QLW EF +RRE + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 128 QGFSRNLQTWEILAQLWHAEFTMRRELGLP---GGERAISNVVMMGMGEPLQNYSALVPA 184
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L D YGLSRR V +STSG++PMID+L+Q+CPV LAVSLHA + LR++LVP+++K
Sbjct: 185 LRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCPVALAVSLHAPVDALRDELVPLNRK 244
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL EL+ AC RY+ ++PR ITFEYCML G+NDT A +L+ L+R ++ +CK NLI
Sbjct: 245 YPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRLVRAAQV--NCKFNLI 302
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L S +R+ FA++L+++G+ T+RK RG+DI+AACGQL+G++
Sbjct: 303 PFNPFPQSGLKRSSAARVAAFAQVLLDAGLVTTVRKTRGDDIDAACGQLAGEV 355
>gi|398807426|ref|ZP_10566304.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
gi|398089436|gb|EJL79952.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
Length = 382
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 252/353 (71%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ +C++LGE FRA QL +WIH+ G SDF +MTDL+ SLR+KL + +
Sbjct: 4 ANLLEFDLEGLAAFCEKLGEKKFRATQLFRWIHQRGASDFAQMTDLAKSLREKLATTARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A +++ S DGT KW+F V N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 EALQVITQHESKDGTIKWLFDVGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR K++K + +R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFSRNLSTGEIVAQLWFAEHFLR--KHLK---RDERVISNVVMMGMGEPLQNYSALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L D+AYGLSRR V +STSG++PMID+L +CPV +AVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCPVAMAVSLHAPNDALRDDLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ ELI AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + I SCK NLI
Sbjct: 239 YPIAELIEACKRYLAHAPRDFITFEYCMLDGVNDQPEHARQLIELVRTHGI--SCKFNLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S R+ FA+ L +G+ T+RK RG+DI+AACGQL+G +
Sbjct: 297 PFNPFPASGLLRSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAACGQLAGDV 349
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 250/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +WIH+ G F++MTDL+ SLR KL+ +
Sbjct: 3 TNLLNFDLNALTEHFAQMGEKPFRAKQVMRWIHQGGAESFDEMTDLAKSLRAKLQEKAVV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GIPVLMAAQESRDGTRKWLLDVGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ NY + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KALGVTPKNERVISNVVMMGMGEPMANYDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC+RY+T +PR ITFEY ML G+ND HA EL+ L++ T CK NLI
Sbjct: 237 YPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEHAHELVQLVKD----TPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I IF +ILM +G+ T+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNKNINIFKEILMEAGLVTTVRKTRGDDIDAACGQLAGQV 345
>gi|350571836|ref|ZP_08940152.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
gi|349791021|gb|EGZ44914.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
Length = 362
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 248/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ + E+GE PFRAKQ+ +W+H+ G SDF++MTDL+ SLR KL++ +
Sbjct: 3 ANLLNYDLSGLTQHFAEMGEKPFRAKQVMRWMHQAGASDFDEMTDLAKSLRAKLQDKAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GVPALMAAQESRDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEPL N+ + + A
Sbjct: 123 QGFNRNLSAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPLANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L + PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEAMPVALAVSLHASNDAVRDEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR +TFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFVTFEYVMLDGINDKPQHAKELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F +IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYDRSSNDAIRVFKEILQEAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1]
gi|81358332|sp|Q5P7B0.1|RLMN_AROAE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1]
Length = 408
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/390 (48%), Positives = 251/390 (64%), Gaps = 43/390 (11%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V + E GE PFRA+Q+ +W+H+FG +DF MTD++ SLR KL I+
Sbjct: 6 NLLDFDVDGLVTWFAERGEKPFRARQVMRWMHRFGETDFGNMTDVAKSLRAKLAEEACIR 65
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + D +S DGTRKW+ V N +E VFIPE NR TLCIS+Q GCA++C FCSTG+Q
Sbjct: 66 APRAIRDAVSVDGTRKWLLDVGSANAVEAVFIPETNRGTLCISSQAGCALDCAFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVT-----------------------------EFKLRREKNIKIN 152
GF RNL+ EIIGQLW+ + + K ++ +
Sbjct: 126 GFNRNLSAAEIIGQLWLANRLLGGSASPAGSKDGDGGPDHASRATKLDHRAADAKGVQSD 185
Query: 153 S---------QGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSG 203
S R I+N+VMMGMGEPL N+ + + AL+L+L DHAYGLSRR V +STSG
Sbjct: 186 SWRSSDPEEDHNGRVISNVVMMGMGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSG 245
Query: 204 IIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMIT 263
I+P +D+L ECPV LAVSLHA ++ LR++LVPI++KYPL+EL+ AC RY+ +PR +T
Sbjct: 246 IVPAMDRLRDECPVALAVSLHAPDDALRDRLVPINRKYPLRELMAACQRYLERAPRDFVT 305
Query: 264 FEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAK 323
FEY ML +ND+D HA L+ L+R CK NLIPFN FPNS S RI+ FA
Sbjct: 306 FEYVMLDDVNDSDAHARALVELVRD----VPCKFNLIPFNPFPNSGFDRSPAERIRRFAA 361
Query: 324 ILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IL+++GI T RK RG+D+NAACGQL+G++
Sbjct: 362 ILIDAGIVTTTRKTRGDDVNAACGQLAGQV 391
>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
gi|254807186|sp|C1DD41.1|RLMN_LARHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 366
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 249/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + + +GE PFRAKQ+ +W+H+ G +DF+ MTDL+ SLR KL ++ +
Sbjct: 3 TNLLDFTLPALTEHFAAMGEKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLHDTATV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M +Q S DGTRKW+ V N +ETVFIPE +R TLC+S+QVGCA+ C FCSTGR
Sbjct: 63 TVPSLMLEQASSDGTRKWLLDVGTGNRVETVFIPEDDRGTLCVSSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K++ + + +R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFNRNLSTAEIIGQLWWAN------KSMGVTPKNERVISNVVMMGMGEPLANYDNVVAA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L DH YGLSRR V LSTSG++P +D+L ++CPV LAVSLHA N+ +R+++VPI+KK
Sbjct: 177 MRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCPVALAVSLHAPNDRIRDEIVPINKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+EL+ AC RY+ +PR +TFEY ML IND HA EL++L+R CK NLI
Sbjct: 237 YPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVALVRD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS + N+ ++ F IL +G T+RK RG DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYGRASNNAVRAFRDILAEAGYITTVRKTRGEDIDAACGQLAGQV 345
>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
gi|205829632|sp|A2SHB8.1|RLMN_METPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 394
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 183/355 (51%), Positives = 252/355 (70%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ +C++LGE FRA QL +WIH+ G SDF +M+DL+ SLR+KL +
Sbjct: 4 ANLLEFDLDALAAFCEQLGEKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREKLAGRAVV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ ++S+ +S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 64 RPLAVLSEHVSADGTVKWLFDVGGGNAVETVFIPENDRGTLCISSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E +LR +R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFSRNLSTGEIVAQLWHAEHQLRARLGTT-----ERVISNVVMMGMGEPLQNYAALLPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PMID+L ++CPV LAVSLHA + LR+ LVP+++K
Sbjct: 179 LRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCPVALAVSLHAPTDALRDDLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL--TSCKIN 298
YP+ EL+ AC RY+ +PR ITFEYCML G+ND++ A EL+ L+ + + CKIN
Sbjct: 239 YPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELLRLVGERGPVGRVPCKIN 298
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S +R++ FA++L++ G+ T+R+ RG+DI+AACGQL+G++
Sbjct: 299 LIPFNPFPASGLTRSSVARVQAFAQLLVDGGLVTTVRRTRGDDIDAACGQLAGEV 353
>gi|349574484|ref|ZP_08886432.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
gi|348013953|gb|EGY52849.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
Length = 363
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 249/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ N+ ++GE PFRA+Q+ +W+H G +DF+ MTDL+ SLR KLK+ +
Sbjct: 3 TNLLNYDLQGLTNHFAQMGEKPFRARQVMRWMHLGGAADFDDMTDLAKSLRAKLKDRAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GVPDLMTAQKSRDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFNRNLSAAEIIGQLWWAN------KALGVTPKNERVISNVVMMGMGEPLANYDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDAVRNEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL EL+ AC RY+ +PR +TFEY ML G+ND HA EL++L+R CK NLI
Sbjct: 237 YPLTELMAACRRYLAKAPRDFVTFEYVMLDGVNDRPEHARELLTLVRD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S S N I+IF IL +G+ VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPHSGYQRSSNENIRIFRDILQQAGLVVTVRKTRGDDIDAACGQLAGQV 345
>gi|257093692|ref|YP_003167333.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046216|gb|ACV35404.1| radical SAM enzyme, Cfr family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 373
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 253/353 (71%), Gaps = 6/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + E GE PFRA+Q+ +W+H+FG DF+ MTD++ SLR+KL+ + +
Sbjct: 4 NLLDLDAAGLTAFFAECGEKPFRARQVLRWLHRFGQLDFDAMTDIARSLREKLRATAQVL 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P +++D++S DGTRK++F V N +E VFIPE R TLCISTQ GCA++C FCSTG+Q
Sbjct: 64 PPVVIADRLSDDGTRKFLFDVGGGNAVEAVFIPEAERGTLCISTQAGCALDCSFCSTGKQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQLW L + + G+R I+N+V+MGMGEPL N +T+ AL
Sbjct: 124 GFNRNLTVAEIVGQLWQARHSLGAYAAGE-TAGGERVISNVVLMGMGEPLANLDNTVTAL 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D+AYGLSRR V +STSG++P +D+L ECPV LAVSLHA N+ LR++LVPI++KY
Sbjct: 183 RLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRNECPVALAVSLHAPNDRLRDELVPINRKY 242
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC RY+ +PR +TFEY ML G+ND+D A EL++L R CK NLIP
Sbjct: 243 PLHELMSACLRYLEKAPRDFVTFEYVMLAGVNDSDAQAHELLALTRD----VPCKFNLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN FP S S RI+ FA+ L+++G+ T RK RG+DI+AACGQL+G++L
Sbjct: 299 FNPFPGSPYHRSSAPRIRQFAETLIDAGVVTTTRKTRGDDIDAACGQLAGQVL 351
>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
Length = 404
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/361 (51%), Positives = 254/361 (70%), Gaps = 9/361 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD V +C+ LGE FRA QL +WIH+ G SDF++M+DL+ SLR KLK + +I
Sbjct: 4 ANLLDFDLDGLVVFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLRAKLKTAAHI 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ +++ Q S DGT KW+F V N +E V+IPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 QGLPVITQQESADGTIKWLFDVGDGNAVEAVYIPEDDRGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKIN-SQGKRQITNIVMMGMGEPLLNYKSTIG 179
QGF RNL+ GEI+ QLW E LR + + + R ITN+VMMGMGEPL NY + +
Sbjct: 124 QGFSRNLSTGEIVAQLWHAEHFLRARRQHPLQPGEDHRVITNVVMMGMGEPLQNYAALVP 183
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L DH YGLSRR + +STSG++PM+++L+++CPV LAVSLHA N+ LR+ LVP+++
Sbjct: 184 ALRVMLDDHGYGLSRRRLTVSTSGVVPMMERLSEDCPVALAVSLHAPNDGLRDGLVPLNR 243
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS----- 294
KYP+ EL+ C Y+ ++PR ITFEYCML G+ND HA EL++LM+ + +
Sbjct: 244 KYPIHELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELLALMQVFRQRAADLGHG 303
Query: 295 --CKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
CK+NLIPFN FP S L S R++ FAKIL+ +GI T+RK RG+DI+AACGQL+G
Sbjct: 304 VGCKLNLIPFNPFPESGLKRSPGERVQAFAKILLEAGIVTTVRKTRGDDIDAACGQLAGD 363
Query: 353 I 353
+
Sbjct: 364 V 364
>gi|291613878|ref|YP_003524035.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
gi|291583990|gb|ADE11648.1| radical SAM enzyme, Cfr family [Sideroxydans lithotrophicus ES-1]
Length = 359
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/354 (53%), Positives = 252/354 (71%), Gaps = 11/354 (3%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD P + E GE PFRA+Q+ +WI+K G SDF+ M+DL++SLR+KLK
Sbjct: 1 MQNLLDFEPAAMTAWFAEHGEKPFRARQVLRWIYKGGESDFDAMSDLAISLREKLKLIAC 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P +M ++ + DGTRKW+ V N +ETVFIPE+ R TLC+STQ GCA++C FCSTG
Sbjct: 61 IQSPKVMREETASDGTRKWLLDVGTGNAVETVFIPEEGRGTLCVSTQAGCALDCAFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ EIIGQ+W +L ++ + G +TN+V+MGMGEPLLN+ +T+
Sbjct: 121 KQGFNRNLSTAEIIGQVWWANRELGKDAD------GNWPVTNVVLMGMGEPLLNFDNTVN 174
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D+AYGLSRR V +STSG++P +D+L ECPV LA+SLHA N+ LRN LVPI++
Sbjct: 175 ALRLMLDDNAYGLSRRRVTVSTSGVVPAMDRLRDECPVALAISLHAPNDALRNVLVPINQ 234
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR +TFEY ML G+ND+ HA ELI L+R CK NL
Sbjct: 235 KYPLQELMAACQRYLEKAPRDFVTFEYVMLAGVNDSVQHARELIELVRD----VPCKFNL 290
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP + S + F +LM +GI TIRK+RG+DI AACGQL+G++
Sbjct: 291 IPFNPFPQAPYQRSDMPTVLRFRDVLMQAGIVTTIRKVRGDDIAAACGQLAGQV 344
>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
Length = 384
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 252/353 (71%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C++LGE FRA QL +WIH+ G SDF +MTDL+ SLR+KL + +
Sbjct: 4 ANLLDFDLEGLAAFCEKLGEKRFRATQLFRWIHQRGASDFTQMTDLAKSLREKLATTARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A +++ S DGT KW+F V N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 EALPVLTQHESKDGTIKWLFDVGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR K++K + +R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFSRNLSTGEIVAQLWFAEHFLR--KHLK---RDERVISNVVMMGMGEPLQNYTALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L D+AYGLSRR V +STSG++PMID+L +C V +AVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDCAVAMAVSLHAPNDALRDDLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +L+ L+RK+ + SCK NLI
Sbjct: 239 YPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLVELVRKHDV--SCKFNLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S R+ FA+ L +G+ T+RK RG+DI+AACGQL+G +
Sbjct: 297 PFNPFPASGLLRSPQPRVLAFARTLSEAGLVTTVRKTRGDDIDAACGQLAGDV 349
>gi|171463401|ref|YP_001797514.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192939|gb|ACB43900.1| radical SAM enzyme, Cfr family [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 383
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/350 (55%), Positives = 249/350 (71%), Gaps = 14/350 (4%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
Y L E PFRAKQL +WIH+ GVSD N M+DL+ S R L + + + ++ D+ + D
Sbjct: 4 YVAGLNEKPFRAKQLMQWIHQRGVSDINHMSDLAKSFRATLLDKTEVLSLPVIKDEHALD 63
Query: 75 GTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
GTRKW+ V N +E+VFIPE +R TLCIS+Q GCA+NC FCSTG QGF RNLT GEII
Sbjct: 64 GTRKWLLDVGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGHQGFARNLTSGEII 123
Query: 134 GQLWVTEFKLRREKNI-----KINSQG----KRQITNIVMMGMGEPLLNYKSTIGALKLI 184
GQLW E LR + K + G R I+N+VMMGMGEPLLNY + + AL+L+
Sbjct: 124 GQLWFAEHLLRNDPEAVCRIEKFLTPGWEHTGRVISNVVMMGMGEPLLNYDNVVSALRLM 183
Query: 185 LSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLK 244
L D AYGLSRR V +STSG++PMID+LAQ+CPV LAVSLHA N+ LR++LVP+++KY L+
Sbjct: 184 LDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRDQLVPLNQKYLLR 243
Query: 245 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNC 304
EL+ AC RY+ ++PR +TFEYCML +ND+DI A EL+ L+R K CKINLIPFN
Sbjct: 244 ELLDACERYLPFAPRDFLTFEYCMLDSVNDSDIQAKELVRLLRNIK----CKINLIPFNP 299
Query: 305 FPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FP S L S R+ FA IL+++G+ T+RK RG+DI AACGQL+G ++
Sbjct: 300 FPESGLKRSPAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQLAGDVV 349
>gi|239815175|ref|YP_002944085.1| Cfr family radical SAM protein [Variovorax paradoxus S110]
gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
Length = 382
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 252/353 (71%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ +C++LGE FRA QL +WIH+ G SDF +MTDL+ SLR+KL + +
Sbjct: 4 ANLLEFDLEGLAAFCEKLGEKRFRATQLFRWIHQRGASDFAQMTDLAKSLREKLATTARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+A +++ S DGT KW+F V N +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 EALPVITQHESKDGTIKWLFDVGDGNAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR K++K + +R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFSRNLSTGEIVAQLWFAEHFLR--KHLK---RDERVISNVVMMGMGEPLQNYTALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L D+AYGLSRR V +STSG++PMID+L +CPV +AVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCPVAMAVSLHAPNDALRDDLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +L+ L+R + + SCK NLI
Sbjct: 239 YPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLVELVRTHGV--SCKFNLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S R+ FAK L +G+ T+RK RG+DI+AACGQL+G +
Sbjct: 297 PFNPFPASGLLRSPQPRVLAFAKALSEAGLVTTVRKTRGDDIDAACGQLAGDV 349
>gi|89901088|ref|YP_523559.1| hypothetical protein Rfer_2310 [Rhodoferax ferrireducens T118]
gi|123397164|sp|Q21W25.1|RLMN_RHOFD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89345825|gb|ABD70028.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
Length = 382
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/354 (54%), Positives = 251/354 (70%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C+ LGE +RA QL +WIH+ G S+F+ M+DL+ SLR+KLK S +
Sbjct: 3 ANLLDFDLDGLAVFCERLGEKRYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVSAQV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP ++S IS DGT KW+F V + +E VFIPE++R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 KAPDLISQHISSDGTIKWLFDVGGGDAVEAVFIPEEDRGTLCISSQAGCAMGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL GEII QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLKTGEIIAQLWFAEHFLRKHLQ-----RDERVISNVVMMGMGEPLQNYAELVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PM+D+LA++CPV LAVSLHA N+ LR+ LVP++KK
Sbjct: 178 LRAMLDDHGYGLSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPNDLLRDDLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRK-NKILTSCKINL 299
Y L EL+ AC+RY+ Y+PR ITFEYCML +ND HA +L+ L++ + CK NL
Sbjct: 238 YSLAELLNACNRYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQHYSSGGVWCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S RI+ FAKIL ++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPASGLTRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>gi|404379277|ref|ZP_10984342.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
gi|404294703|gb|EJZ50198.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
Length = 364
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 250/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +WIH+ G +F++MTDL+ SLR KL ++ +
Sbjct: 4 TNLLNFDLPTLTEHFAQMGEKPFRAKQVMRWIHQSGAENFDQMTDLAKSLRAKLNDNAQV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +++ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 64 GIPALITSQESKDGTRKWLLDVGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGR 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEPL NY + I A
Sbjct: 124 QGFNRNLSTAEIIGQLWWAN------KALGVTPKNERVISNVVMMGMGEPLANYDNVINA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+ +R+K+VP++KK
Sbjct: 178 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDQVRDKIVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC+RY+ +PR ITFEY ML GIND HA EL+ L++ T CK NLI
Sbjct: 238 YPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEHAHELVQLVKD----TPCKFNLI 293
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I IF +ILM + + T+RK RG+DI+AACGQL+G++
Sbjct: 294 PFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQV 346
>gi|333375090|ref|ZP_08466914.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 248/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +WIH+ G +F +MTDL+ SLR KL+ +
Sbjct: 3 TNLLNYDLPALTEHFAQMGEKPFRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLEQQAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GIPALMTSQESKDGTRKWLLDVGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEPL NY + I A
Sbjct: 123 QGFNRNLSAAEIIGQLWWAN------KALGVTPKNERVISNVVMMGMGEPLANYDNVITA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC+RY+ +PR ITFEY ML G+ND HA EL+ L++ T CK NLI
Sbjct: 237 YPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVELVKD----TPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I IF +ILM + + T+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQV 345
>gi|381400771|ref|ZP_09925691.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
gi|380834257|gb|EIC14105.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
Length = 364
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 248/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +WIH+ G +F +MTDL+ SLR KL+ +
Sbjct: 3 TNLLNYDLPALTEHFAQMGEKPFRAKQVMRWIHQGGAENFEQMTDLAKSLRAKLEQQAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GIPALMTSQESKDGTRKWLLDVGTGNGVETVFIPETERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEPL NY + I A
Sbjct: 123 QGFNRNLSAAEIIGQLWWAN------KALGVTPKNERVISNVVMMGMGEPLANYDNVITA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDKVRDEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC+RY+ +PR ITFEY ML G+ND HA EL+ L++ T CK NLI
Sbjct: 237 YPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVELVKD----TPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I IF +ILM + + T+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNKNINIFKEILMEANLVTTVRKTRGDDIDAACGQLAGQV 345
>gi|330999629|ref|ZP_08323338.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329574135|gb|EGG55711.1| 23S rRNA m2A2503 methyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 389
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 253/352 (71%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +C++LGE PFRAKQL++WIH+ G DF++MTDL+ S R KL+ I+
Sbjct: 11 NLLGFDAEGLKKFCEDLGEKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKLEKVAEIR 70
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ D+ + DGTRKW+ V N +E V+IP+ R TLC+S+Q GCA+NC+FCSTG+Q
Sbjct: 71 GPEIIRDKTAADGTRKWLLDVGSGNAVEMVYIPQDGRGTLCVSSQAGCAMNCLFCSTGKQ 130
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EIIGQL E LR K++ I + +R I+N+VMMGMGEPL N + I +L
Sbjct: 131 GFNRNLKASEIIGQLRHAEHTLR--KDLGITDENERVISNVVMMGMGEPLQNLDAVIPSL 188
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+L D+AYGLSRR V +STSG++ +DKLA++CPV LAVSLHA NN LR+K++P+++K+
Sbjct: 189 KLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKH 248
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL++L+ AC RY+ ++PR ITFEY ++ G+ND+ A ELI+L++ CK NLIP
Sbjct: 249 PLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELITLVQD----IPCKFNLIP 304
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L SK +K FA L +GI T+RK+RG+DI+AACGQL+G+I
Sbjct: 305 FNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQLAGEI 356
>gi|394987688|ref|ZP_10380527.1| hypothetical protein SCD_00088 [Sulfuricella denitrificans skB26]
gi|393792907|dbj|GAB70166.1| hypothetical protein SCD_00088 [Sulfuricella denitrificans skB26]
Length = 359
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/352 (54%), Positives = 248/352 (70%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD K + E GE PFRAKQL +W+H+FG SDF++M+DLS LR+KL ++
Sbjct: 4 NLLDFDQEKLAVFFAESGEKPFRAKQLLRWMHQFGESDFSRMSDLSKVLREKLGGLAIVE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ +QIS D TRKW+ V +ETVFIPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 64 PPRLIQEQISDDSTRKWLLDVGAGQGVETVFIPEGDRGTLCVSSQVGCALECSFCSTGKQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQLW K + + +R I+N+V+MGMGEPLLN+ + + AL
Sbjct: 124 GFNRNLSVAEIIGQLWWAN------KALGCTPRNERVISNVVLMGMGEPLLNFDNMVTAL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D+AYGLSRR V +STSGI+P +D+L ++CPV LAVSLHA N+ LR+ LVPI+KKY
Sbjct: 178 RLMLDDNAYGLSRRRVTVSTSGIVPAMDRLREQCPVALAVSLHAPNDALRDILVPINKKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC RY+ +PR ITFEY ML G+ND+ HA EL++L R CK NLIP
Sbjct: 238 PLSELMAACRRYVVDAPRDFITFEYVMLEGVNDSPAHARELVALTRD----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP+S S I+ F IL+ +G VT RK RG+DI+AACGQL+GK+
Sbjct: 294 FNPFPDSEYKRSSADVIRRFGAILIEAGRVVTTRKTRGDDIDAACGQLAGKV 345
>gi|303257588|ref|ZP_07343600.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
gi|302859558|gb|EFL82637.1| radical SAM enzyme, Cfr family [Burkholderiales bacterium 1_1_47]
Length = 384
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 253/352 (71%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +C++LGE PFRAKQL++WIH+ G DF++MTDL+ S R KL+ I+
Sbjct: 6 NLLGFDAEGLKKFCEDLGEKPFRAKQLERWIHRRGARDFSEMTDLAKSFRAKLEKVAEIR 65
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ D+ + DGTRKW+ V N +E V+IP+ R TLC+S+Q GCA+NC+FCSTG+Q
Sbjct: 66 GPEIIRDKTAADGTRKWLLDVGSGNAVEMVYIPQDGRGTLCVSSQAGCAMNCLFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EIIGQL E LR K++ I + +R I+N+VMMGMGEPL N + I +L
Sbjct: 126 GFNRNLKASEIIGQLRHAEHTLR--KDLGITDENERVISNVVMMGMGEPLQNLDAVIPSL 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+L D+AYGLSRR V +STSG++ +DKLA++CPV LAVSLHA NN LR+K++P+++K+
Sbjct: 184 KLMLDDNAYGLSRRRVTVSTSGLVRQMDKLAEQCPVALAVSLHAPNNELRDKIMPVNRKH 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL++L+ AC RY+ ++PR ITFEY ++ G+ND+ A ELI+L++ CK NLIP
Sbjct: 244 PLEQLLAACKRYLEHAPRDFITFEYILIGGVNDSLAQAKELITLVQD----IPCKFNLIP 299
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L SK +K FA L +GI T+RK+RG+DI+AACGQL+G+I
Sbjct: 300 FNPFPGSGLERSKPEEVKAFADRLNGAGIVTTVRKVRGDDIDAACGQLAGEI 351
>gi|419797471|ref|ZP_14322948.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
gi|385698033|gb|EIG28425.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
Length = 364
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++ E+GE PFRAKQ+ +WIH+ G FN+MTDL+ SLR KL +
Sbjct: 3 TNLLNYDLNGLTHHFAEMGEKPFRAKQVMRWIHQAGAQSFNEMTDLAKSLRLKLNEQASV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 DVPKLMMAQESTDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|383758612|ref|YP_005437597.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
gelatinosus IL144]
gi|381379281|dbj|BAL96098.1| ribosomal RNA large subunit methyltransferase N [Rubrivivax
gelatinosus IL144]
Length = 372
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 248/352 (70%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C LGE FRA QL +WIH+ G SDF+KM+DL+ SLR KL + ++
Sbjct: 4 NLLDFDLEGLAAFCDSLGEKRFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAGAAVVE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+ ++S+ +S DGT KW+F V N +ETV+IPE +R TLC+S+Q GCA+ C FCSTG Q
Sbjct: 64 SLPVISEHVSADGTTKWLFDVGGGNAVETVYIPEDDRGTLCVSSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ GEII QL E +LR G+R I N+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLSTGEIIAQLRYAEHRLR-------GPDGQRVIDNVVMMGMGEPLQNYTAVVPAL 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L DH YGLSRR V +STSG++ MID+L ++CPV LAVSLHA N+ LR+ LVPI++K
Sbjct: 177 RVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAPNDALRDALVPINRKD 236
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
++ L+ AC RY+ +PR ITFEYCML G+ND A+EL+ L+R+ ++ CK NLIP
Sbjct: 237 GIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQALELVHLVRRRRV--PCKFNLIP 294
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L S R+ FAK+L ++GI TIRK+RG+DI+AACGQL+G++
Sbjct: 295 FNPFPESGLKRSPRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQLAGEV 346
>gi|171059552|ref|YP_001791901.1| radical SAM protein [Leptothrix cholodnii SP-6]
gi|205829645|sp|B1XXL6.1|RLMN_LEPCP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|170776997|gb|ACB35136.1| radical SAM enzyme, Cfr family [Leptothrix cholodnii SP-6]
Length = 393
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 251/362 (69%), Gaps = 11/362 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD YC++LGE FRA QL +WIH+ G +DF +M+DL+ SLR KL + I
Sbjct: 5 NLLDFDLDALAAYCEQLGEKRFRAVQLFRWIHQRGAADFGQMSDLAKSLRSKLADVACIA 64
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
++S+ S DGT KW+F V N +ETV+IPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 65 PLRVLSEHRSSDGTIKWLFDVGDGNAVETVYIPEDDRATLCISSQAGCAVGCRFCSTGHQ 124
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREK--NIKINSQG------KRQITNIVMMGMGEPLLN 173
GF RNL+ EI+ QLW E LRRE+ + + ++ +R I+N+VMMGMGEPL N
Sbjct: 125 GFSRNLSTAEILAQLWYAEHSLRRERAEGVSVGARAATGPASERIISNVVMMGMGEPLQN 184
Query: 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNK 233
Y + + AL+++L DH YGLSRR V +STSG++PMID+LA + PV LAVSLHA ++ LR+
Sbjct: 185 YAAVLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALAVSLHACDDALRDV 244
Query: 234 LVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
LVP+++KYPL EL+ AC Y+ +PR ITFEYCML G+ND+D A L+ L+ +
Sbjct: 245 LVPLNRKYPLAELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQARALLKLVGDKGPVG 304
Query: 294 --SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
CK NLIPFN FP S L S N R++ FA++L++ G+ T+RK RG+DI+AACGQL+G
Sbjct: 305 RLPCKFNLIPFNPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTRGDDIDAACGQLAG 364
Query: 352 KI 353
++
Sbjct: 365 EV 366
>gi|261377750|ref|ZP_05982323.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
gi|269146035|gb|EEZ72453.1| radical SAM enzyme, Cfr family [Neisseria cinerea ATCC 14685]
Length = 366
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/353 (54%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +WIH+ G +F +MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWIHQSGAQNFGEMTDLAKSLRYKLNEQASI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 DIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEP+ N+++ + A
Sbjct: 123 QGFNRNLSAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFENVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +DKL PV LAVSLHASN+ +RNK+VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDKLRDTMPVALAVSLHASNDEVRNKIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I+IF IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSNNENIRIFIDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
Length = 362
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + E+GE PFRAKQ+ +W+H+ G +F +MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLNGLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EVPKLMMAQESTDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I+IF IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
Length = 362
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + E+GE PFRAKQ+ +W+H+ G +F +MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLNGLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EVPKLMMAQESTDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
gi|385340216|ref|YP_005894088.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|416177921|ref|ZP_11610290.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|416191949|ref|ZP_11616330.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|416203929|ref|ZP_11620162.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|421538259|ref|ZP_15984436.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|421544602|ref|ZP_15990678.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|421546717|ref|ZP_15992762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|421548969|ref|ZP_15994993.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|421552920|ref|ZP_15998892.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|433467457|ref|ZP_20424911.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|433492708|ref|ZP_20449801.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|433494842|ref|ZP_20451910.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|433497009|ref|ZP_20454047.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|433499071|ref|ZP_20456080.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|433501047|ref|ZP_20458033.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|433503188|ref|ZP_20460149.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
gi|205829823|sp|A1KUD6.1|RLMN_NEIMF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|402317078|gb|EJU52617.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|402322962|gb|EJU58412.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|402323793|gb|EJU59235.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|402325648|gb|EJU61057.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|402330099|gb|EJU65448.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|432202291|gb|ELK58355.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|432228494|gb|ELK84194.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|432230045|gb|ELK85724.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|432233502|gb|ELK89129.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|432234905|gb|ELK90525.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|432236338|gb|ELK91947.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|432239953|gb|ELK95497.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
Length = 364
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
gi|205829821|sp|A9LZN6.1|RLMN_NEIM0 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 364
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + + GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADTGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQASI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDRAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|340362818|ref|ZP_08685184.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
gi|339886976|gb|EGQ76579.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
Length = 364
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++ E+GE PFRAKQ+ +WIH+ G F++MTDL+ SLR KL +
Sbjct: 3 TNLLNYDLNGLTHHFAEMGEKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 DVPKLMMAQESADGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+++ + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFENVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++ E+GE PFRAKQ+ +WIH+ G F++MTDL+ SLR KL +
Sbjct: 3 TNLLNYDLNGLTHHFAEMGEKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 DVPKLMMAQESTDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+++ + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFENVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|347540922|ref|YP_004848347.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|345644100|dbj|BAK77933.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 249/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + + ++ +GE PFRAKQ+ +W+H+ G +DF+ MTD++ SLR KL S +
Sbjct: 3 TNLLDFNLAQLTDHFAAMGEKPFRAKQVMRWMHQMGEADFDAMTDIAKSLRCKLHESAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M +Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 RVPDLMVEQASSDGTRKWLLDVGTGNGVETVFIPEDDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R I+N+VMMGMGEPL N+ + + A
Sbjct: 123 QGFNRNLSTAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPLANFDNVVSA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++P +D+L + CPV LAVSLHA N+ +R+ +VPI+KK
Sbjct: 177 LQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACPVALAVSLHAPNDAIRDVIVPINKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+EL+ AC RY+ +PR +TFEY ML +ND HA +LI L++ CK NLI
Sbjct: 237 YPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEHARQLIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N+ I F +IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNNAIHRFREILQEAGYVVTVRKTRGDDIDAACGQLAGQV 345
>gi|421565597|ref|ZP_16011370.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|433536930|ref|ZP_20493435.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
gi|402344032|gb|EJU79174.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|432273866|gb|ELL28963.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTSAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSRYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|416161426|ref|ZP_11606391.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|421557411|ref|ZP_16003316.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|421561379|ref|ZP_16007227.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|433469505|ref|ZP_20426926.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|433473705|ref|ZP_20431066.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|433482269|ref|ZP_20439529.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|433484252|ref|ZP_20441478.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|433486519|ref|ZP_20443714.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|402335049|gb|EJU70324.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|402338842|gb|EJU74072.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|432203775|gb|ELK59825.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|432210003|gb|ELK65969.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|432216062|gb|ELK71945.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|432220938|gb|ELK76755.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|432221804|gb|ELK77608.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|349611007|ref|ZP_08890323.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
gi|348615037|gb|EGY64569.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++ E+GE PFRAKQ+ +WIH+ G F++MTDL+ SLR KL +
Sbjct: 3 TNLLNYDLNGLTHHFAEMGEKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 DVPKLMMAQESTDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|416213193|ref|ZP_11622177.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
gi|421542612|ref|ZP_15988719.1| 23S rRNA methyltransferase [Neisseria meningitidis NM255]
gi|421554912|ref|ZP_16000851.1| 23S rRNA methyltransferase [Neisseria meningitidis 98008]
gi|254673132|emb|CBA07913.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325144551|gb|EGC66850.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240013]
gi|402317442|gb|EJU52980.1| 23S rRNA methyltransferase [Neisseria meningitidis NM255]
gi|402332065|gb|EJU67396.1| 23S rRNA methyltransferase [Neisseria meningitidis 98008]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/353 (54%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG+IP +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMIPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
Length = 366
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 186/342 (54%), Positives = 245/342 (71%), Gaps = 11/342 (3%)
Query: 13 VNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQIS 72
++ ++GE PFRAKQ+ +WIH+ G F++MTDL+ +LR KL+++ I P +M+ Q S
Sbjct: 14 TDHFAQMGEKPFRAKQVMRWIHQSGAQTFDEMTDLAKALRAKLEDNAVIGIPALMTSQES 73
Query: 73 FDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGE 131
DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGRQGF RNLT E
Sbjct: 74 RDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGRQGFNRNLTAAE 133
Query: 132 IIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYG 191
IIGQLW K + + + +R I+N+VMMGMGEP+ NY + I AL ++L DH YG
Sbjct: 134 IIGQLWWAN------KALGVTPKNERVISNVVMMGMGEPMANYDNVITALSIMLDDHGYG 187
Query: 192 LSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251
LSRR V +STSG++P +D+L + PV LAVSLHASN+ +R+++VP++KKYPLKEL+ AC+
Sbjct: 188 LSRRRVTVSTSGMVPQMDRLKDDMPVALAVSLHASNDKVRDEIVPLNKKYPLKELMAACN 247
Query: 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
RY+ +PR ITFEY ML GIND HA EL+ L++ T CK NLIPFN FPNS
Sbjct: 248 RYLAKAPRDFITFEYVMLDGINDKPEHARELVQLVKD----TPCKFNLIPFNPFPNSGYE 303
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S N I IF +ILM + + T+RK RG+DI+AACGQL+G++
Sbjct: 304 RSSNKNINIFKEILMEADLVTTVRKTRGDDIDAACGQLAGQV 345
>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACRRYLVKAPRDFITFEYVMLDGINDRAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
Length = 364
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++ E+GE PFRAKQ+ +WIH+ G F++MTDL+ SLR KL +
Sbjct: 3 TNLLNYDLNGLTHHFAEMGEKPFRAKQVMRWIHQAGAQSFDEMTDLAKSLRLKLNEQASV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 DVPKLMMAQESSDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSTNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|385851095|ref|YP_005897610.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|389605577|emb|CCA44494.1| ribosomal RNA large subunit methyltransferase N [Neisseria
meningitidis alpha522]
Length = 364
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
gi|385324024|ref|YP_005878463.1| hypothetical protein NMV_1088 [Neisseria meningitidis 8013]
gi|385338161|ref|YP_005892034.1| hypothetical protein NMAA_1039 [Neisseria meningitidis WUE 2594]
gi|416182800|ref|ZP_11612236.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|421550805|ref|ZP_15996806.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|433471445|ref|ZP_20428831.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|433475156|ref|ZP_20432497.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|433477755|ref|ZP_20435075.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|433479825|ref|ZP_20437115.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|433513632|ref|ZP_20470422.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|433515920|ref|ZP_20472688.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|433517705|ref|ZP_20474451.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|433520087|ref|ZP_20476807.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|433522022|ref|ZP_20478713.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|433524326|ref|ZP_20480987.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|433526413|ref|ZP_20483043.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|433528380|ref|ZP_20484989.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|433530581|ref|ZP_20487170.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|433532850|ref|ZP_20489413.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|433534647|ref|ZP_20491187.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|433539090|ref|ZP_20495566.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|433541165|ref|ZP_20497617.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
gi|205829822|sp|A1ISB3.1|RLMN_NEIMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|402329342|gb|EJU64703.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|432208297|gb|ELK64275.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|432210974|gb|ELK66929.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|432215420|gb|ELK71309.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|432216164|gb|ELK72046.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|432247164|gb|ELL02603.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|432252846|gb|ELL08196.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|432253441|gb|ELL08785.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|432254809|gb|ELL10143.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|432259570|gb|ELL14841.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|432259839|gb|ELL15109.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|432261177|gb|ELL16434.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|432265181|gb|ELL20377.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|432266673|gb|ELL21855.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|432267088|gb|ELL22269.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|432271389|gb|ELL26514.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|432273452|gb|ELL28550.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|432277178|gb|ELL32227.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
Length = 364
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|374852470|dbj|BAL55402.1| hypothetical conserved protein [uncultured beta proteobacterium]
Length = 382
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/341 (54%), Positives = 241/341 (70%), Gaps = 12/341 (3%)
Query: 20 GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKW 79
GE PFRA+Q+ +WIH+ GV+DF M+D++ +LR +L S I P ++SD++S DGTRKW
Sbjct: 32 GEKPFRARQVYRWIHRMGVADFAAMSDVAKTLRAQLAQSASITPPRVISDRVSSDGTRKW 91
Query: 80 IFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWV 138
+ V + N +ETVFIPE++R TLCISTQ GCA+ C FC+TG+QGF RNLT GEI+GQLW+
Sbjct: 92 LLDVGQGNAVETVFIPERSRGTLCISTQAGCALECAFCATGKQGFNRNLTTGEILGQLWL 151
Query: 139 T------EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
++ R + G R +TN+VMMGMGEPL NY + + ALK++L D YGL
Sbjct: 152 ANHVLGPAYEHARLDDGDWTDNG-RVVTNVVMMGMGEPLANYDAVVRALKVMLDDFGYGL 210
Query: 193 SRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252
SRR V +STSG++P +D+L ECPV LAVSLHA N+ LR++LVPI+KKYPLKELI AC R
Sbjct: 211 SRRRVTVSTSGLVPAMDRLRAECPVALAVSLHAPNDRLRDELVPINKKYPLKELIAACER 270
Query: 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
Y+T SPR I FEY +L G+ND A ELI+L R SCK NLIPFN FP S
Sbjct: 271 YLTASPRDFIMFEYVLLDGVNDNPRDAQELIALTRG----LSCKFNLIPFNPFPGSPFRR 326
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
R++ FA+ LM +G TIR+ RG+D+ AACGQL+G++
Sbjct: 327 PAPERVRAFAERLMAAGRLTTIRRTRGDDVAAACGQLAGQV 367
>gi|421563510|ref|ZP_16009329.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
gi|421907044|ref|ZP_16336932.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|393292008|emb|CCI72901.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|402341206|gb|EJU76393.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
Length = 364
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+NIVMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNIVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|319943743|ref|ZP_08018024.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
gi|319742976|gb|EFV95382.1| cfr family radical SAM enzyme [Lautropia mirabilis ATCC 51599]
Length = 460
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/368 (50%), Positives = 257/368 (69%), Gaps = 20/368 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L F+++C +GE PFRA QL +W+H+ GV+D++ MTDL+ S R++L++ I+
Sbjct: 65 NLLGLDRQGFLDFCGGMGEKPFRAHQLMRWVHQRGVADWSAMTDLARSFRERLQDKALIQ 124
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ D + D TRKW+F V N +E VFIPE R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 125 APSVLKDHTAPDATRKWLFDVGAGNAVEAVFIPEARRGTLCVSSQAGCAVNCSFCSTGKQ 184
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRR--------------EKNIKINSQGK-RQITNIVMMG 166
GF RNL EI+GQ+W+ LR+ + + ++ G R I+NIV MG
Sbjct: 185 GFSRNLNTAEILGQIWLANQLLRQPGAQPRWGGADDMAQLDEDVDDAGALRPISNIVFMG 244
Query: 167 MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHAS 226
MGEPLLNY + + AL+ +L DH YGLSRR V +STSG++P+ID+L+++CPV LAVSLHAS
Sbjct: 245 MGEPLLNYNALLPALRALLDDHGYGLSRRRVTVSTSGVVPLIDRLSEDCPVALAVSLHAS 304
Query: 227 NNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLM 286
N+ LR++LVP+++KYPLKEL+ AC RY+ +PR ITFEY ML IND+ HA EL +L+
Sbjct: 305 NDTLRDQLVPLNRKYPLKELLAACQRYLKVAPRDFITFEYVMLKDINDSVAHARELAALV 364
Query: 287 RKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAAC 346
CK NLIPFN FPNS L S + I+ F +L+ +GI T+R+ RG++I+AAC
Sbjct: 365 AD----VPCKFNLIPFNPFPNSGLSRSSDRTIRQFGDVLLRAGIVTTVRRTRGDEIDAAC 420
Query: 347 GQLSGKIL 354
GQL+G+++
Sbjct: 421 GQLAGEVV 428
>gi|385855368|ref|YP_005901881.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
Length = 364
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTSAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
gi|385341775|ref|YP_005895646.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|385853062|ref|YP_005899576.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|385857379|ref|YP_005903891.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|416170615|ref|ZP_11608367.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|416187679|ref|ZP_11614291.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|416196373|ref|ZP_11618143.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|418288492|ref|ZP_12900973.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|418290737|ref|ZP_12902857.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|421540565|ref|ZP_15986710.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|421559264|ref|ZP_16005139.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|421567660|ref|ZP_16013394.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|427827981|ref|ZP_18995000.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|433465256|ref|ZP_20422738.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|433488593|ref|ZP_20445755.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|433490636|ref|ZP_20447762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|433504965|ref|ZP_20461904.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|433507319|ref|ZP_20464227.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|433509250|ref|ZP_20466119.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|433511525|ref|ZP_20468352.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
gi|81784539|sp|Q9JZ42.1|RLMN_NEIMB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|372201111|gb|EHP15078.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|372201790|gb|EHP15672.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|402318719|gb|EJU54235.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|402336659|gb|EJU71919.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|402343693|gb|EJU78839.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|432203200|gb|ELK59254.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|432223426|gb|ELK79207.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|432227627|gb|ELK83336.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|432241090|gb|ELK96620.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|432241684|gb|ELK97213.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|432246638|gb|ELL02084.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|432247573|gb|ELL03010.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
Length = 364
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
Length = 398
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 242/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + E+GE PFRAKQ+ +W+H+ G +F +MTDL+ SLR KL I
Sbjct: 39 TNLLNYDLNGLTQHFAEMGEKPFRAKQVMRWMHQAGAQNFEEMTDLAKSLRAKLNEQATI 98
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 99 EVPKLMMAQESTDGTRKWLLDVGTGNGVETVFIPEAERGTLCISSQVGCALECTFCSTGR 158
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 159 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 212
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 213 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDQIVPLNKK 272
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 273 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 328
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL G VT+RK RG+DI+AACGQL+G++
Sbjct: 329 PFNPFPNSGYERSTNENIRVFRDILQQVGFVVTVRKTRGDDIDAACGQLAGQV 381
>gi|298368581|ref|ZP_06979899.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282584|gb|EFI24071.1| radical SAM enzyme, Cfr family [Neisseria sp. oral taxon 014 str.
F0314]
Length = 364
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 246/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + E+GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR+KL I
Sbjct: 3 TNLLNYDLNSLTRHFAEMGEKPFRAKQVMRWMHQAGAQNFDEMTDLAKSLRQKLIEGATI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M+ Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EVPKLMAAQESSDGTRKWLLDVGTGNGVETVFIPETDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L +H YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+K+VP++KK
Sbjct: 177 LSIMLDNHGYGLSRRRVTVSTSGMVPQMDRLRDAMPVALAVSLHASNDEVRDKIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI L+R CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDNAQHARELIDLVRD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S S I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPHSGYERSSAENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|385335912|ref|YP_005889859.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|75356171|sp|Q5F911.1|RLMN_NEIG1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807190|sp|B4RMG2.1|RLMN_NEIG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 364
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I+IF IL + VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|385328576|ref|YP_005882879.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
Length = 364
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTSAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L+ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVTD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 466
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/352 (52%), Positives = 249/352 (70%), Gaps = 8/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C+ LGE FRA QL +W+H+ G S F+ M+DL+ SLR KL+ ++
Sbjct: 4 NLLDFDLEGLAAFCESLGEKKFRATQLFRWVHQKGASQFDDMSDLAKSLRDKLRGHAEVR 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A +++ IS DGT KW+F V + +ETVFIPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 64 ALPVITQHISADGTIKWLFDVGNGDAVETVFIPESDRGTLCISSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EI+ QLW E LR + R I+N+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLKTWEILAQLWFAEHFLRSHLGVS-----DRVISNVVMMGMGEPLQNYVALVPAL 178
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K++L DH YGLSRR V +STSG++PM+D+L ++CPV LAVSLHA ++LR+ LVP+++KY
Sbjct: 179 KVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCPVALAVSLHAPEDSLRDNLVPLNRKY 238
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC RY+ ++PR ITFEYCML G+ND HA L+ L++++ + CK NLIP
Sbjct: 239 PLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQLVKESGV--PCKFNLIP 296
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L+ S N+ ++ FA+IL++ G+ TIRK RG+DI+AACGQL+G +
Sbjct: 297 FNPFPASGLLRSSNNAVQAFARILVDGGLVTTIRKTRGDDIDAACGQLAGDV 348
>gi|429745119|ref|ZP_19278562.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161326|gb|EKY03743.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 362
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/352 (53%), Positives = 244/352 (69%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + E+GE PFRA+Q+ +W+H G ++F +MTDL+ SLR KL+ I
Sbjct: 4 NLLDYDLNSLTAWFAEMGEKPFRARQVMRWMHWGGAANFTEMTDLAKSLRAKLEEKAQIG 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P +M+ Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGRQ
Sbjct: 64 VPALMTSQESRDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQLW K + + +R I+N+VMMGMGEPL NY++ + AL
Sbjct: 124 GFNRNLTTAEIIGQLWWAN------KALGATPKDERVISNVVMMGMGEPLANYENVVRAL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+ +R+++VP++KKY
Sbjct: 178 SVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDAVRDQIVPLNKKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC RY+ +PR +TFEY ML GIND HA EL+ L+ CK NLIP
Sbjct: 238 PLKELMGACRRYLVKAPRDFVTFEYVMLDGINDKVEHARELLKLVED----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS S I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 294 FNPFPNSGYDRSSAENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
Length = 364
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFDEMTDLAKSLRHKLNEQASI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L+DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I+IF IL + VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRIFRDILQQAEFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
Length = 372
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/352 (52%), Positives = 247/352 (70%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C LGE FRA QL +WIH+ G SDF+KM+DL+ SLR KL + ++
Sbjct: 4 NLLDFDLEGLAAFCDSLGEKRFRAVQLFRWIHQKGESDFDKMSDLAKSLRGKLAGAAVVE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+ ++S+ +S DGT KW+F V N +ETV+IPE +R TLC+S+Q GCA+ C FCSTG Q
Sbjct: 64 SLPVISEHVSADGTTKWLFDVGGGNAVETVYIPEDDRGTLCVSSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ GEII QL E +LR G+R I N+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLSTGEIIAQLRYAEHRLR-------GPDGQRVIDNVVMMGMGEPLQNYAAVVPAL 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L DH YGLSRR V +STSG++ MID+L ++CPV LAVSLHA ++ LR+ LVPI++K
Sbjct: 177 RVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCPVALAVSLHAPDDALRDMLVPINRKD 236
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
++ L+ AC RY+ +PR ITFEYCML G+ND A +L+ L+R+ ++ CK NLIP
Sbjct: 237 GIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHLVRRRRV--PCKFNLIP 294
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L S R+ FAK+L ++GI TIRK+RG+DI+AACGQL+G++
Sbjct: 295 FNPFPESGLKRSPRERVTAFAKVLQDAGIVTTIRKVRGDDIDAACGQLAGEV 346
>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/353 (51%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRA+Q+ +W+H+ DF++MTDL+ SLR KL S +
Sbjct: 3 TNLLNYDLAGLTAHFAQMGEKPFRARQVMRWMHQGAAGDFDEMTDLAKSLRAKLNESAQV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M+ Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GVPALMAAQESRDGTRKWLLDVGTGNGVETVFIPETDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + +R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFNRNLSTAEIIGQLWWAN------KALGATPKDERVISNVVMMGMGEPLANYDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH Y LSRR V +STSG++P +D+L ++ PV LAVSLHA N+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHAPNDAIRNEIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR +TFEY ML G+ND HA EL+ L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S + I++F IL +G+ VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYNRSSDENIRVFRDILYQAGLVVTVRKTRGDDIDAACGQLAGQV 345
>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica 020-06]
gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 364
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + + ++GE PFRAKQ+ +WIH+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLIRHFADMGEKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI+L++ CK NLI
Sbjct: 237 YPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|429462724|ref|YP_007184187.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811522|ref|YP_007447977.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338238|gb|AFZ82661.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776680|gb|AGF47679.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 373
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/338 (58%), Positives = 245/338 (72%), Gaps = 16/338 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
+R QL+ WIH+ VS F++MT+LSM LR LK I+A + + Q S DGTRKW+F
Sbjct: 30 YRISQLKNWIHRRQVSSFDEMTNLSMKLRDYLKTIAKIEAMPLKTQQFSMDGTRKWLFDA 89
Query: 84 K-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTE-- 140
N +ETVFIP+ NRNTLCIS+Q GCA+NC FC TG+QGF RNLT EIIGQLW +
Sbjct: 90 GFDNAVETVFIPDSNRNTLCISSQAGCAVNCSFCFTGQQGFNRNLTTSEIIGQLWWAQKN 149
Query: 141 -----FKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
F +K+I INS +ITNIVMMGMGEPLLNY I AL+L++ +++Y LS+R
Sbjct: 150 INNDFFSGNLDKSI-INSP---KITNIVMMGMGEPLLNYSQVIPALRLMMDENSYALSKR 205
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
+ LSTSGI+PMIDKL +CPV LA+SLHA N+ LR+KL+PI+KKYPL+EL+ +C Y++
Sbjct: 206 KITLSTSGIVPMIDKLVNDCPVSLAISLHAPNDELRDKLIPINKKYPLQELMKSCRNYVS 265
Query: 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 315
Y+PR ITFEYCML IND+D HA ELI L+R K CKINLIPFN FPNSNL S
Sbjct: 266 YAPRDFITFEYCMLDNINDSDKHAFELIELVRTIK----CKINLIPFNSFPNSNLKRSTQ 321
Query: 316 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+RI F KIL + GI T+RK RG+DINAACGQL+G I
Sbjct: 322 NRILSFVKILNSQGIVTTVRKTRGDDINAACGQLAGSI 359
>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
Length = 364
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + + ++GE PFRAKQ+ +WIH+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLIRHFADMGEKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + +
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTS 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI+L++ CK NLI
Sbjct: 237 YPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINLVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
Length = 362
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/352 (52%), Positives = 244/352 (69%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + E+GE PFRAKQ+ +W+H G +DF +MTDL+ SLR KL+ +
Sbjct: 4 NLLNYDLKTLTEWFAEMGERPFRAKQVMRWMHWGGAADFAEMTDLAKSLRAKLEEHACVG 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP +M+ Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGRQ
Sbjct: 64 APALMASQESRDGTRKWLLDVGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EI+GQLW K + + +R I+N+VMMGMGEPL NY + + +L
Sbjct: 124 GFNRNLTTAEIVGQLWWAN------KALGATPKDERVISNVVMMGMGEPLANYDNVVRSL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L DH YGLSRR V +STSG++P +D+L ++ PV LAVSLHASN+++R+++VP++KKY
Sbjct: 178 SVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMPVALAVSLHASNDHVRDQIVPLNKKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLK+L+ AC RY+ +PR +TFEY ML G+ND HA EL+ L+ CK NLIP
Sbjct: 238 PLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKLVED----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP+S S I+IF IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 294 FNPFPHSGYERSSAENIRIFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|319779677|ref|YP_004130590.1| ribosomal RNA large subunit methyltransferase N [Taylorella
equigenitalis MCE9]
gi|397661904|ref|YP_006502604.1| ribosomal RNA large subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
equigenitalis MCE9]
gi|394350083|gb|AFN35997.1| ribosomal RNA large subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
Length = 378
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/352 (53%), Positives = 243/352 (69%), Gaps = 5/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ L + G PFRAKQL WIH+ G S+F+ MT+L+ RK L I
Sbjct: 8 NLIGLDYTVLTELVAKWGHKPFRAKQLMNWIHQKGESNFSNMTNLANDFRKNLAEFAEIS 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ Q+S DGT KW+F V+ N IETVFIPE +R TLCIS+Q GC + C FCSTG Q
Sbjct: 68 VPKELTKQVSTDGTTKWLFDVQNNNAIETVFIPEDDRGTLCISSQAGCTVACRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQ+W+ ++ G R I+N+V MGMGEPLLNY + A+
Sbjct: 128 GFNRNLTTSEIIGQVWLARKEILNSSTDIQKLPGDRVISNVVFMGMGEPLLNYDQVLPAV 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ +AYGLSRR V +STSG+IP +DKL+Q+CPV LAVSLHA N+ LRN+L+P++KKY
Sbjct: 188 KMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALAVSLHAPNDALRNQLIPLNKKY 247
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKELI AC+RYI ++PR ITFEY ML +NDTDIHA +LI + R+ K K+NLIP
Sbjct: 248 PLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHANQLIEICREVK----SKVNLIP 303
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L S + R+K F+ IL ++GI T RK RG+DI+AACGQL+G I
Sbjct: 304 FNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDAACGQLAGDI 355
>gi|399115746|emb|CCG18549.1| ribosomal RNA large subunit methyltransferase [Taylorella
equigenitalis 14/56]
Length = 378
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 243/352 (69%), Gaps = 5/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ L + G PFRAKQL WIH+ G S+F+ MT+L+ RK L I
Sbjct: 8 NLIGLDYTALTELVAKWGHKPFRAKQLMNWIHQKGESNFSNMTNLANDFRKNLAEFAEIS 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ Q+S DGT KW+F V+ N IETVFIPE +R TLCIS+Q GC + C FCSTG Q
Sbjct: 68 VPKELTKQVSTDGTTKWLFDVQNNNAIETVFIPEDDRGTLCISSQAGCTVACRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQ+W+ ++ G R I+N+V MGMGEPLLNY + A+
Sbjct: 128 GFNRNLTTSEIIGQVWLARKEILNSSTDIQKLPGDRVISNVVFMGMGEPLLNYDQVLPAV 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ +AYGLSRR V +STSG+IP +DKL+Q+CPV LAVSLHA N+ LR++L+P++KKY
Sbjct: 188 KMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCPVALAVSLHAPNDALRDQLIPLNKKY 247
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKELI AC+RYI ++PR ITFEY ML +NDTDIHA +LI + R+ K K+NLIP
Sbjct: 248 PLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHANQLIEICREVK----SKVNLIP 303
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S L S + R+K F+ IL ++GI T RK RG+DI+AACGQL+G I
Sbjct: 304 FNPFPESGLKRSSSQRVKAFSAILNDAGIVATTRKTRGDDIDAACGQLAGDI 355
>gi|114332136|ref|YP_748358.1| radical SAM protein [Nitrosomonas eutropha C91]
gi|122313183|sp|Q0AE39.1|RLMN_NITEC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114309150|gb|ABI60393.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosomonas eutropha C91]
Length = 379
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/364 (50%), Positives = 250/364 (68%), Gaps = 15/364 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + +++C+E+GE P+RA+QL +W+H+FG ++F +M+DL+ + R+KL
Sbjct: 1 MINLLDFNKTGLIHFCEEMGEKPYRARQLLRWVHRFGKTEFIEMSDLAKTFRQKLMERAV 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
+ P I+SD + DGTRKW+ N +E VFIPE NR TLC+S+QVGCA+ C FCSTG
Sbjct: 61 VHPPEIISDHTAGDGTRKWLLSTGTGNAVEMVFIPEPNRGTLCVSSQVGCALACSFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLW---------VTEFKLRREKNIKI-NSQGKRQITNIVMMGMGE 169
RQGF RNL+V EIIGQLW V E I+ N+ +R +TN+VMMGMGE
Sbjct: 121 RQGFNRNLSVAEIIGQLWWANRLLEGQVGELFSPDVAQIRADNTDTRRPVTNVVMMGMGE 180
Query: 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNN 229
PL N+++ + AL L+LSD AYGLSRR V +STSG++P +D+L + CPV LAVSLHA N+
Sbjct: 181 PLANFENVVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDA 240
Query: 230 LRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKN 289
LR++LVPI+KKYP+++L+ AC RY+ +PR ITFEY ML +ND+ A EL+ ++R
Sbjct: 241 LRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLRDVNDSIALARELVQVVRN- 299
Query: 290 KILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
CK+NLIPFN F S S I F +LM +GI T+RK RG+DI AACGQL
Sbjct: 300 ---IPCKLNLIPFNTFAGSGYERSNTDAIDNFRDVLMQAGIVTTVRKTRGDDIAAACGQL 356
Query: 350 SGKI 353
+G++
Sbjct: 357 AGQV 360
>gi|205829851|sp|Q82XV4.2|RLMN_NITEU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 379
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/364 (50%), Positives = 246/364 (67%), Gaps = 15/364 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + + V +C E+GE P+RA+QL +W+H+ G +DF +M+DL+ R KL
Sbjct: 1 MINLLDFNKTELVRFCGEMGEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAV 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
++ P I+SD + DGTRKW+ N +E VFIPE +R TLC+S+QVGCA+ C FCSTG
Sbjct: 61 VQLPEIVSDHTAGDGTRKWLLSTGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVT----------EFKLRREKNIKINSQGKRQITNIVMMGMGE 169
RQGF RNL+V EIIGQLW F L + + +R +TN+VMMGMGE
Sbjct: 121 RQGFNRNLSVAEIIGQLWWANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGE 180
Query: 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNN 229
PL N+++ + AL L+LSD AYGLSRR V +STSG++P +D+L + CPV LAVSLHA N+
Sbjct: 181 PLANFENLVTALDLMLSDDAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDA 240
Query: 230 LRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKN 289
LR++LVPI+KKYP+++L+ AC RY+ +PR ITFEY ML G+ND+ A EL+ L+R
Sbjct: 241 LRDQLVPINKKYPIRDLLAACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRN- 299
Query: 290 KILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
CK+NLIPFN F S S I F +LM +GI T+RK RG+DI AACGQL
Sbjct: 300 ---VPCKLNLIPFNAFSGSGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQL 356
Query: 350 SGKI 353
+G++
Sbjct: 357 AGQV 360
>gi|399116783|emb|CCG19592.1| ribosomal RNA large subunit methyltransferase [Taylorella
asinigenitalis 14/45]
Length = 380
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/354 (52%), Positives = 247/354 (69%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ L + + G PFRAKQL WIH+ G SDF+ MT+L+ R L I
Sbjct: 8 NLIGLDNVSLTELVAKWGHKPFRAKQLINWIHQKGKSDFSNMTNLANDFRSHLTEYSVIA 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P +++ Q+S DGT KW+F V+ N IETV+IPE +R TLCIS+Q GC + C FCSTG Q
Sbjct: 68 TPKVITKQVSSDGTIKWLFDVQNNNAIETVYIPEDDRGTLCISSQAGCTVACRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIK--INSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL EIIGQ+W ++++ N + ++ R ITN+V MGMGEPLLNY +
Sbjct: 128 GFNRNLNTSEIIGQVWWARDEIKKSLNTDSGLEAEDDRVITNVVFMGMGEPLLNYDQVLP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL++ +AYGLS+R V +STSG+IP +DKL+Q+CPV LAVSLHA N+ LR++L+P++K
Sbjct: 188 AIKLLIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCPVALAVSLHAPNDELRDQLIPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC+RYI ++PR ITFEY ML G+NDTD HA +LI + R+ K K+NL
Sbjct: 248 KYPLRELMDACNRYIEFAPRDFITFEYIMLDGVNDTDAHAKQLIDICREVK----SKVNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S + R++ F+ IL ++GI T RK RG+DI+AACGQL+G I
Sbjct: 304 IPFNPFPESGLRRSSHERVRAFSAILNDAGIVATTRKTRGDDIDAACGQLAGDI 357
>gi|348590089|ref|YP_004874551.1| ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
gi|347973993|gb|AEP36528.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
Length = 380
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/354 (52%), Positives = 246/354 (69%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ L + + G PFRAKQL WIH+ G SDF+ MT+L+ R L I
Sbjct: 8 NLIGLDNVSLTELVAKWGHKPFRAKQLINWIHQKGKSDFSNMTNLANDFRSHLTEYSVIA 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P +++ Q+S DGT KW+F V+ N IETV+IPE +R TLCIS+Q GC + C FCSTG Q
Sbjct: 68 TPKVITKQVSSDGTIKWLFDVQNNNAIETVYIPEDDRGTLCISSQAGCTVACRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIK--INSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQ+W ++++ N ++ R ITN+V MGMGEPLLNY +
Sbjct: 128 GFNRNLSTSEIIGQVWWARDEIKKSLNTDSGFEAEDDRVITNVVFMGMGEPLLNYDQVLP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL++ +AYGLS+R V +STSG+IP +DKL+Q+CPV LAVSLHA N+ LR++L+P++K
Sbjct: 188 AIKLLIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCPVALAVSLHAPNDELRDQLIPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC+RYI ++PR ITFEY ML G+NDTD HA +LI + R+ K K+NL
Sbjct: 248 KYPLRELMDACNRYIDFAPRDFITFEYIMLDGVNDTDAHAKQLIDICREVK----SKVNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S + R++ F+ IL +GI T RK RG+DI+AACGQL+G I
Sbjct: 304 IPFNPFPESGLRRSSHERVRAFSAILNGAGIVATTRKTRGDDIDAACGQLAGDI 357
>gi|438000044|ref|YP_007183777.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451812973|ref|YP_007449426.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339278|gb|AFZ83700.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451778942|gb|AGF49822.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 378
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/338 (60%), Positives = 239/338 (70%), Gaps = 12/338 (3%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
FRA QLQ+WIHKF + F+ MT++S LR KLK I+ + S+ S DGT KW+F V
Sbjct: 30 FRATQLQQWIHKFSANSFDVMTNISSKLRDKLKEISKIENMPVKSETFSKDGTVKWLFDV 89
Query: 84 -KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTE-- 140
N IETVFIPEKNR TLCIS+Q GCA+NC FCSTG QGF RNL+ EII QLW +
Sbjct: 90 GNNNAIETVFIPEKNRRTLCISSQAGCAVNCAFCSTGHQGFNRNLSANEIISQLWSAQRS 149
Query: 141 --FKL-RREKNIKINSQGKRQ--ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
+KL E I NS R ITNIV MGMGEPLLNY + ++KL+L +AYG SRR
Sbjct: 150 INYKLIGNESLINKNSIKDRGNLITNIVFMGMGEPLLNYSEVVQSIKLLLDVNAYGFSRR 209
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
V +STSGI+PMIDKLA++CPV LAVSLHA+N+ LRNKLVPI+KKYP+KELI +C RYI
Sbjct: 210 KVTVSTSGIVPMIDKLARDCPVSLAVSLHAANDVLRNKLVPINKKYPIKELIDSCKRYIL 269
Query: 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 315
SPR ITFEYCML GINDTD H ELISL++ K CK+NLIPFN F NS
Sbjct: 270 RSPRDFITFEYCMLSGINDTDNHLKELISLIKTIK----CKVNLIPFNSFINSEFKAPAI 325
Query: 316 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+I FA L+NSGI T+RK RGNDI AACGQLSG I
Sbjct: 326 EKINSFANGLINSGIMTTVRKTRGNDIYAACGQLSGSI 363
>gi|421863302|ref|ZP_16295001.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 243/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + + ++GE PFRAKQ+ +WIH+ G +F++MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLIRHFADMGEKPFRAKQVMRWIHQSGAQNFDEMTDLAKSLRHKLNEQANI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M Q S DGTRKW+ V N +ETVFIPE R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 GIPKLMMSQESSDGTRKWLLDVGTGNGVETVFIPESERGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L D+ YGLSRR V +STSG++ +D+L PV LAVSLHASN+ +R+++VP++KK
Sbjct: 177 LSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMPVALAVSLHASNDEVRDQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML G+ND HA ELI+L++ CK NLI
Sbjct: 237 YPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINLVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSKENIRVFKDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
>gi|451936487|ref|YP_007460341.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777410|gb|AGF48385.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 379
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/342 (57%), Positives = 239/342 (69%), Gaps = 19/342 (5%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
FR QL KWIHKF F+ MT++S LR KLK I+A I S+ +S DGT KW+F
Sbjct: 30 FRIGQLHKWIHKFSADSFDVMTNISCQLRHKLKEISKIEAMPIESETLSKDGTIKWLFDA 89
Query: 84 -KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEF- 141
N IETVFIPEKNR TLCIS+Q GCA+NC FC+TG QGF RNL+ EI+GQLW +
Sbjct: 90 GNSNAIETVFIPEKNRRTLCISSQAGCAVNCAFCATGHQGFNRNLSANEIVGQLWSAQRS 149
Query: 142 ----------KLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYG 191
L + IK G ITN+V MGMGEPLLNYK I ++KL+L +AYG
Sbjct: 150 INLNLITGIEDLNNKNTIK---SGNNLITNVVFMGMGEPLLNYKQVIKSIKLLLDVNAYG 206
Query: 192 LSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251
SRR + +STSGI+PMIDKLA++CPV LAVSLHA+N++LRNKLVPI+KKYPL ELI +C
Sbjct: 207 FSRRKITVSTSGIVPMIDKLARDCPVSLAVSLHAANDDLRNKLVPINKKYPLNELIESCK 266
Query: 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
RYIT SPR ITFEYCML G+NDTD H ELI+L+ + K CKINLIPFN F +S+
Sbjct: 267 RYITRSPRDFITFEYCMLSGVNDTDKHIKELINLVSQIK----CKINLIPFNSFESSDFR 322
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+I FA L+NSGI T+RK RG+DI+AACGQL+G +
Sbjct: 323 APTIEKINSFANKLLNSGIMTTVRKTRGDDIHAACGQLAGNV 364
>gi|451812247|ref|YP_007448701.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778149|gb|AGF49097.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 378
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/338 (57%), Positives = 235/338 (69%), Gaps = 12/338 (3%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
FR QLQ+WIHKF F+ MT++S L+ KLK I+A I S+ S DGT KW+F
Sbjct: 30 FRTGQLQQWIHKFSADSFDVMTNISNQLKNKLKEISKIEAMPIKSESFSKDGTIKWLFDA 89
Query: 84 -KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTE-- 140
N IETVFIPEKNR TLCIS+Q GCA+NC FC+TGRQGF RNL+ EI+GQLW +
Sbjct: 90 GNSNAIETVFIPEKNRRTLCISSQAGCAVNCAFCATGRQGFNRNLSASEIVGQLWSAQKS 149
Query: 141 -----FKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
K +N I QITNIV MGMGEPLLNY + ++KL+L +AYG SRR
Sbjct: 150 INNNSIKNEDLENKSIIKSSNDQITNIVFMGMGEPLLNYTQVLKSIKLLLDTNAYGFSRR 209
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
V +STSG++PMIDKLA++CPV LAVSLHA+N+ LRNKLVPI+KKYPL +LI +C RYI
Sbjct: 210 KVTVSTSGVVPMIDKLARDCPVALAVSLHAANDVLRNKLVPINKKYPLSDLIESCKRYIM 269
Query: 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 315
+PR ITFEYCML INDTD H ELI+L+ + K CKINLIPFN F NS K
Sbjct: 270 KAPRDFITFEYCMLSEINDTDNHLRELINLVSQIK----CKINLIPFNSFANSEFKAPKI 325
Query: 316 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+I FA L+NSGI T+RK RG+DI AACGQL+G +
Sbjct: 326 EKINSFANKLLNSGIITTVRKTRGDDIYAACGQLAGNV 363
>gi|375106264|ref|ZP_09752525.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
gi|374666995|gb|EHR71780.1| 23S rRNA m2A2503 methyltransferase [Burkholderiales bacterium
JOSHI_001]
Length = 377
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 236/354 (66%), Gaps = 8/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C + GE FRA QL +WIH+ G DF++MTDL+ LR+ L + ++
Sbjct: 5 NLLDFDLDGLAAFCAQRGEKRFRATQLFRWIHQKGARDFSQMTDLAKGLREGLADLAEVR 64
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
I+S+ S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 65 PLAIVSEHTSADGTVKWLFDVGGGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQ 124
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ GEII QLW E LR + S +R I+N+VMMGMGEPL NY + I AL
Sbjct: 125 GFSRNLSTGEIIAQLWHAEHALRE----RFGST-ERVISNVVMMGMGEPLQNYAAVIPAL 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+ +L DH YGLSRR V +STSG++ ID L ECPV LAVSLHA + LRN+LVP++KK
Sbjct: 180 RTMLDDHGYGLSRRRVTVSTSGMVAKIDTLRDECPVALAVSLHAPTDELRNELVPLNKKD 239
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLM--RKNKILTSCKINL 299
+ L+ AC RY++ +PR ITFEYCML G+NDT A +L+ L+ R CK NL
Sbjct: 240 GIVALMQACERYLSAAPRDFITFEYCMLDGVNDTPAQARQLLDLVQGRAGAPRVPCKFNL 299
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S R+ FAK+L + G+ TIRK RG+DI AACGQL+G++
Sbjct: 300 IPFNPFPASGLTRSSPERVAAFAKVLQDGGVVTTIRKTRGDDIAAACGQLAGQV 353
>gi|451823104|ref|YP_007459378.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775904|gb|AGF46945.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 371
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/334 (56%), Positives = 242/334 (72%), Gaps = 8/334 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
+R Q++ WI+K+ V F++MT+L + LR LK + I+ + + IS DGT KW+F V
Sbjct: 28 YRVAQIKSWIYKYHVDSFDQMTNLPVKLRNFLKETAKIEPMSLKTQNISSDGTMKWLFDV 87
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N IETV IP+ +R TLCIS+Q GCA+NC FC TG+QGF RNLT EII QLW +
Sbjct: 88 GNGNAIETVLIPDIDRYTLCISSQAGCAVNCSFCYTGQQGFNRNLTTNEIISQLWWAQKS 147
Query: 143 LRRE---KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL 199
+ + NI+ +S +ITN+VMMGMGEPLLNY I AL+L++ D+AY LSRR + L
Sbjct: 148 INDKFPKNNIQDDSLAASKITNVVMMGMGEPLLNYGQVIPALRLMMDDNAYSLSRRRITL 207
Query: 200 STSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259
STSGI+PMIDK+AQ+CPV LAVSLHA NN+LRNKL+PI+KKYPL+ELI +C Y++ +PR
Sbjct: 208 STSGIVPMIDKMAQDCPVSLAVSLHAPNNSLRNKLMPINKKYPLEELIKSCKNYVSRAPR 267
Query: 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319
+TFEYCML IND D HA+ELI L+ + CK+NLIPFN FP+SNL S +RI
Sbjct: 268 DFVTFEYCMLENINDNDDHAVELIELIS----VLKCKVNLIPFNSFPSSNLKRSSLNRIL 323
Query: 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FAKIL +SGI TIRK RG+DI AACGQL+G +
Sbjct: 324 SFAKILNDSGIITTIRKTRGDDILAACGQLAGNV 357
>gi|319941514|ref|ZP_08015841.1| ribosomal RNA large subunit methyltransferase N [Sutterella
wadsworthensis 3_1_45B]
gi|319804988|gb|EFW01827.1| ribosomal RNA large subunit methyltransferase N [Sutterella
wadsworthensis 3_1_45B]
Length = 400
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 242/352 (68%), Gaps = 5/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C+ +GE PFRA+QL +W+H+ V DFN+MTDL+ + R KL I+
Sbjct: 26 NLLDFDAAGLKAWCESIGEKPFRARQLTRWVHRHLVCDFNEMTDLAKTFRAKLLKLAEIR 85
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ ++ S DGTRKW+F V N +E VFIPE +R TLCIS+Q GCA+ C+FCSTG+Q
Sbjct: 86 PPEVIHEKKSSDGTRKWLFAVGNGNAVEAVFIPEDDRGTLCISSQAGCAMGCLFCSTGKQ 145
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EI+GQLW E +L R++ I R I+N+V+MGMGEPL N + I A+
Sbjct: 146 GFNRNLTTAEIVGQLWTAERELCRDRGI--TDPNDRVISNVVLMGMGEPLQNLDAVIPAI 203
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+ L D YGLSRR V +STSG++ IDKLA+ PV LAVSLHA+++ LR+KL+PI+KK+
Sbjct: 204 KIFLDDDGYGLSRRRVTVSTSGLVRQIDKLAEAAPVALAVSLHAADDGLRDKLMPINKKH 263
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +L+ AC RY+ +PR ITFEY ML GIND+ A L +L+R+ + CK NLIP
Sbjct: 264 PLGDLMAACRRYLRVAPRDFITFEYVMLGGINDSLADADHLAALVRREHV--PCKFNLIP 321
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S+L ++ F + L G T+RK RG+DI+AACGQL+G++
Sbjct: 322 FNPFPQSDLEKPDREKVLAFCRRLNELGYVTTVRKTRGDDIDAACGQLAGEV 373
>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 376
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/354 (50%), Positives = 247/354 (69%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL ++ + + +GE PFRA Q+ KWIH+ V DF MTDLS +LR++L I
Sbjct: 7 TNLLGMTRQQLEGFFTAMGEKPFRAVQVLKWIHQHWVEDFQDMTDLSKALRERLAQVAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+AP ++ DQ S DGT KW+ + N IETVFIPEK+R TLC+S+QVGCA++C FCST R
Sbjct: 67 RAPEVVYDQASADGTHKWLLRLDDGNCIETVFIPEKDRGTLCVSSQVGCALDCTFCSTAR 126
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EI+GQLW+ +L E+ + +R ++N+V+MGMGEPLLN+ + + A
Sbjct: 127 QGFNRNLSSAEIVGQLWLANRRLAPERTVA-GKAPERVVSNVVLMGMGEPLLNFDNVVDA 185
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L+L D+AYGLS+R V LSTSGI+P +D+L + V LAVSLHA N+ LR++LVPI++K
Sbjct: 186 MRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETLDVALAVSLHAPNDALRDELVPINRK 245
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+ EL+ AC RY+ H ITFEY ML G+ND+ HA +LI+L+R CKINL
Sbjct: 246 YPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSPEHARQLIALLRD----VPCKINL 301
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP + S ++ I+ F ++L N+G R+ RG+DI+AACGQL GK+
Sbjct: 302 IPFNPFPETRYRRSGDAAIRRFQEMLANAGYTTITRRTRGDDIDAACGQLVGKV 355
>gi|421897149|ref|ZP_16327517.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2]
gi|206588355|emb|CAQ35318.1| conserved hypothetical protein 48 [Ralstonia solanacearum MolK2]
Length = 396
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/365 (49%), Positives = 240/365 (65%), Gaps = 16/365 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST-- 177
+QGF RNL+ GEI+GQLW
Sbjct: 124 KQGFSRNLSTGEIVGQLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183
Query: 178 ---------IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNN 228
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+
Sbjct: 184 XXXXXXXXXVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSRDLPVALAVSLHASND 243
Query: 229 NLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRK 288
LR+ LVP++KKYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++
Sbjct: 244 ALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSIEHARELLRVIAD 303
Query: 289 NKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQ 348
CK NLIPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQ
Sbjct: 304 ----VPCKFNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQ 359
Query: 349 LSGKI 353
L+G++
Sbjct: 360 LAGEV 364
>gi|386829559|ref|ZP_10116666.1| 23S rRNA m2A2503 methyltransferase [Beggiatoa alba B18LD]
gi|386430443|gb|EIJ44271.1| 23S rRNA m2A2503 methyltransferase [Beggiatoa alba B18LD]
Length = 375
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/340 (51%), Positives = 242/340 (71%), Gaps = 6/340 (1%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
+ ++LGE PFRA QL +WIH+ GV++F++MT+ S +LR++L+ I P +++ Q S D
Sbjct: 19 FTEQLGEKPFRATQLLQWIHQQGVTNFDEMTNFSKALRQRLQTVACITLPKVVTTQKSAD 78
Query: 75 GTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
GTRKW+ + N IETVFIPE +R TLC+S+QVGCA++C FC+T +QGF RNLT+GEII
Sbjct: 79 GTRKWLLQLADGNCIETVFIPEDDRGTLCVSSQVGCALDCRFCATAQQGFNRNLTLGEII 138
Query: 134 GQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLS 193
QLW+ E +LR E +++ R I+N+VMMGMGEPL N+ + A+KL++ D AYGLS
Sbjct: 139 AQLWLAEHELRAE-GYQLDESYARVISNVVMMGMGEPLANFNHVVKAMKLMMDDFAYGLS 197
Query: 194 RRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253
R + LST+GI+P + +L +ECPV LAVSLHA+N+ LRN+LVPI++KYP+ EL+ AC Y
Sbjct: 198 WRRITLSTAGIVPALLRLKEECPVNLAVSLHATNDELRNQLVPINQKYPIAELLAACRAY 257
Query: 254 ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICS 313
+ R +TFEY ML GINDT HA L+ L+ K+NLIPFN FP + S
Sbjct: 258 VEEDNRRRVTFEYVMLKGINDTPAHARALVKLLSH----VPSKVNLIPFNPFPQTGFERS 313
Query: 314 KNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+RI+ F IL+ +G+ RK RG+DI+AACGQL+GK+
Sbjct: 314 DPARIETFRDILIQAGMITLTRKTRGDDIDAACGQLAGKV 353
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0.1|RLMN_METCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 239/352 (67%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + LGE PFRA QL +WIH+ GV+DF MT+LS +LR +L+ I+
Sbjct: 15 NLLDLDREGMEAFFVRLGEKPFRASQLLQWIHQRGVTDFGLMTNLSKTLRSRLEAVSEIR 74
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ +Q S DGTRKW+ V N +ETV IP++ RNTLC+S+QVGC++ C FCST RQ
Sbjct: 75 PPELVLEQRSADGTRKWVLQVDAVNRVETVLIPDEGRNTLCVSSQVGCSLECSFCSTARQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQLWV + +L E+ +I+N+V+MGMGEPLLN+ + + A
Sbjct: 135 GFNRNLTTAEIIGQLWVAQHRLDEEQ----------RISNVVLMGMGEPLLNFGNVVAAT 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D AYGLS+R V LSTSGI+P +D+LA+ + LAVSLHA ++ LRN+LVPI++KY
Sbjct: 185 RLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAVSLHAPDDTLRNELVPINRKY 244
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P++EL+ AC RY+ R +TFEY ML G+ND HA L+ L+ K+NLIP
Sbjct: 245 PIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLSH----VPSKVNLIP 300
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS CS I FA+ L ++G+ T RK RG DI+AACGQL GK+
Sbjct: 301 FNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAACGQLVGKV 352
>gi|400287779|ref|ZP_10789811.1| hypothetical protein PPAM21_06876 [Psychrobacter sp. PAMC 21119]
Length = 409
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/365 (50%), Positives = 255/365 (69%), Gaps = 17/365 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL ++ + Y K +GE PFR+ Q+ +WI++ GV+DF +MT+LS SLR KL + +
Sbjct: 29 TNLLGMTQAQLAEYFKSIGEKPFRSTQVVRWIYQQGVTDFEQMTNLSKSLRDKLSANACV 88
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
P ++ Q S DGTRKW+F V +++ETV IP + R TLC+S+QVGCA++C F
Sbjct: 89 VPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKINGRKTLCVSSQVGCALDCSF 148
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKI----NSQGKRQITNIVMMGMGEPL 171
CSTG+QGF R+LT EIIGQLWV ++N + +S + +TN+VMMGMGEPL
Sbjct: 149 CSTGKQGFERDLTAAEIIGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPL 208
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
LNYK +G+++L+LSDHAYGLS+R V LSTSG++P + +LAQ+ V LA+SLHA N+ LR
Sbjct: 209 LNYKPVVGSMELMLSDHAYGLSKRRVTLSTSGVVPKMYQLAQDIDVALAISLHAPNDELR 268
Query: 232 NKLVPISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRK 288
N+LVPI+KKYPL+EL+ A Y+ +PRH +T EY ML G+ND++ HA +L++L+
Sbjct: 269 NELVPINKKYPLEELMAAARNYVYDVNPRHKKHVTIEYVMLDGVNDSNEHAHQLVALLGD 328
Query: 289 NKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQ 348
KINLIPFN FP++N S N+RI F+ IL +G TIR+ RG+DI+AACGQ
Sbjct: 329 ----LPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAACGQ 384
Query: 349 LSGKI 353
L G++
Sbjct: 385 LVGQV 389
>gi|30248171|ref|NP_840241.1| hypothetical protein NE0145 [Nitrosomonas europaea ATCC 19718]
gi|30180056|emb|CAD84056.1| Conserved hypothetical protein 48 [Nitrosomonas europaea ATCC
19718]
Length = 361
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/346 (50%), Positives = 235/346 (67%), Gaps = 15/346 (4%)
Query: 19 LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRK 78
+GE P+RA+QL +W+H+ G +DF +M+DL+ R KL ++ P I+SD + DGTRK
Sbjct: 1 MGEKPYRARQLLRWVHQSGKTDFMEMSDLAKGFRHKLMECAVVQLPEIVSDHTAGDGTRK 60
Query: 79 WIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 137
W+ N +E VFIPE +R TLC+S+QVGCA+ C FCSTGRQGF RNL+V EIIGQLW
Sbjct: 61 WLLSTGAGNAVEMVFIPEPSRGTLCVSSQVGCALACSFCSTGRQGFNRNLSVAEIIGQLW 120
Query: 138 VT----------EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSD 187
F L + + +R +TN+VMMGMGEPL N+++ + AL L+LSD
Sbjct: 121 WANRLLEAGSHDPFPLDTTRVQTDKPETRRPVTNVVMMGMGEPLANFENLVTALDLMLSD 180
Query: 188 HAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 247
AYGLSRR V +STSG++P +D+L + CPV LAVSLHA N+ LR++LVPI+KKYP+++L+
Sbjct: 181 DAYGLSRRRVTVSTSGLVPALDRLRERCPVALAVSLHAPNDALRDQLVPINKKYPIRDLL 240
Query: 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307
AC RY+ +PR ITFEY ML G+ND+ A EL+ L+R CK+NLIPFN F
Sbjct: 241 AACERYLPAAPRDFITFEYVMLKGVNDSVALARELVQLVRN----VPCKLNLIPFNAFSG 296
Query: 308 SNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S S I F +LM +GI T+RK RG+DI AACGQL+G++
Sbjct: 297 SGYERSGAEAIGNFRDVLMQAGIVTTVRKTRGDDIAAACGQLAGQV 342
>gi|261856771|ref|YP_003264054.1| Cfr family radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/351 (52%), Positives = 239/351 (68%), Gaps = 9/351 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+P + ++ ELGE PFRA QL KW+H+ V F+ MTDL+ SLR KL++ I+
Sbjct: 24 NLLGLTPQQLKDWFVELGEKPFRATQLLKWVHQRRVDSFDDMTDLAKSLRDKLRDLACIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I DQ S DGTRK++ + +E V+IPE +R TLCIS+QVGC++ C FCSTGRQ
Sbjct: 84 APAIRLDQQSSDGTRKFLLELDGGGSVEMVYIPEDDRATLCISSQVGCSLACTFCSTGRQ 143
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EI+GQLW+ E + R N R I+N+V MGMGEPLLN++S + A
Sbjct: 144 GFNRNLTTAEIVGQLWLAERMIDRAVN------HNRAISNVVFMGMGEPLLNFESVVDAA 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D+AYGLSRR V +STSGIIP ID+LA+ PV LA+SLHA N+ LR+ LVPI++KY
Sbjct: 198 TIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLPVALAISLHAPNDALRDVLVPINQKY 257
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +L+ AC RY P I +EY ML G+ND +HA E+I L+ K + K+NLIP
Sbjct: 258 PLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIRLLAPRK--DAVKVNLIP 315
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
FN FP+S S +RI+ F L +GI RK RG+DI+AACGQL G+
Sbjct: 316 FNPFPSSGYKRSSRNRIERFRATLKAAGINTVPRKTRGDDIDAACGQLVGE 366
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22.1|RLMN_PSYCK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|92393156|gb|ABE74431.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter cryohalolentis
K5]
Length = 413
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 255/365 (69%), Gaps = 17/365 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL ++ + +Y K +GE PFR+ Q+ KWI++ GV+DF +MT+LS SLR KL + +
Sbjct: 33 TNLLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLSANACV 92
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
P ++ Q S DGTRKW+F V +++ETV IP + R TLC+S+QVGCA++C F
Sbjct: 93 IPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCVSSQVGCALDCSF 152
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKI----NSQGKRQITNIVMMGMGEPL 171
CSTG+QGF R+LT EI+GQLWV ++N + +S + +TN+VMMGMGEPL
Sbjct: 153 CSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPL 212
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
LNY+ + +++L+LSDHAYGLS+R V LSTSG++P + +LAQE V LA+SLHA N+ LR
Sbjct: 213 LNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQELDVALAISLHAPNDELR 272
Query: 232 NKLVPISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRK 288
N+LVPI+KKYPL++L+ A Y+ +PRH +T EY ML G+ND++ HA +L++L+
Sbjct: 273 NELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGN 332
Query: 289 NKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQ 348
KINLIPFN FP++N S N+RI F+ IL +G TIR+ RG+DI+AACGQ
Sbjct: 333 ----LPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAACGQ 388
Query: 349 LSGKI 353
L G++
Sbjct: 389 LVGQV 393
>gi|422348552|ref|ZP_16429445.1| 23S rRNA methyltransferase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659186|gb|EKB32041.1| 23S rRNA methyltransferase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 390
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/352 (49%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C +GE FRA QL +W+H+ DF+ MT+L+ R KLK+ ++
Sbjct: 15 NLLDFDLEGLTAWCAGIGEKAFRATQLSRWLHRHVEGDFDNMTNLAKVFRAKLKDMAEVR 74
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++++ S DGTRKW+F V N +E+VFIPE +R TLCISTQ GCA+ C+FCSTG+Q
Sbjct: 75 PPVPITEKKSADGTRKWLFDVGNGNAVESVFIPEDDRGTLCISTQAGCAMGCLFCSTGKQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EI+GQLW E +LRR+ + R I+N+V+MGMGEPL N + + AL
Sbjct: 135 GFNRNLTTAEIVGQLWWAERELRRDAGV--TDPNDRIISNVVLMGMGEPLQNLDNVLRAL 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+ L D+ YGLSRR V +STSG++ +DKLA++ PV LAVSLHA N+ LR+KL+P+++K+
Sbjct: 193 HVFLDDNGYGLSRRRVTVSTSGLVRQMDKLAEDSPVALAVSLHAGNDALRDKLMPVNRKH 252
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +L+ AC RY+ +PR ITFEY ML GIND EL+ L+R+ + CK NLIP
Sbjct: 253 PLADLMAACRRYLKVAPRDFITFEYVMLGGINDRLEQVDELVELVRRENV--PCKFNLIP 310
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN F S+L + ++ F + L +GI T+RK RG+DI+AACGQL+G++
Sbjct: 311 FNPFTQSDLRKPEREQVLAFCRRLNEAGIVTTVRKTRGDDIDAACGQLAGEV 362
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0.1|RLMN_PSYA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71038230|gb|AAZ18538.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter arcticus
273-4]
Length = 409
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/365 (49%), Positives = 255/365 (69%), Gaps = 17/365 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL ++ + +Y K +GE PFR+ Q+ KWI++ GV+DF +MT+LS SLR KL + +
Sbjct: 29 TNLLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLSANACV 88
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
P ++ Q S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 89 IPPKVIHRQYSDDGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCISSQVGCALDCSF 148
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKI----NSQGKRQITNIVMMGMGEPL 171
CSTG+QGF R+LT EI+GQLWV ++N + +S + +TN+VMMGMGEPL
Sbjct: 149 CSTGKQGFERDLTAAEILGQLWVANASYMSDENDSLENIDHSLWENNVTNVVMMGMGEPL 208
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
LNY+ + +++L+LSDHAYGLS+R V LSTSG++P + +LA+E V LA+SLHA N+ LR
Sbjct: 209 LNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKELDVALAISLHAPNDELR 268
Query: 232 NKLVPISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRK 288
N+LVPI+KKYPL++L+ A Y+ +PRH +T EY ML G+ND++ HA +L++L+
Sbjct: 269 NELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQLVALLGD 328
Query: 289 NKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQ 348
KINLIPFN FP++N S N+RI F+ IL +G TIR+ RG+DI+AACGQ
Sbjct: 329 ----LPSKINLIPFNPFPHANYDKSSNNRIHAFSNILSEAGFVCTIRQTRGDDIDAACGQ 384
Query: 349 LSGKI 353
L G++
Sbjct: 385 LVGQV 389
>gi|254490112|ref|ZP_05103304.1| radical SAM enzyme, Cfr family [Methylophaga thiooxidans DMS010]
gi|224464700|gb|EEF80957.1| radical SAM enzyme, Cfr family [Methylophaga thiooxydans DMS010]
Length = 367
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 242/353 (68%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L + ELGE PFRA+QL +WIHK+ V DF +MT+LS +LR+KL+ I
Sbjct: 5 TNLLGLDLKGLEAFFVELGEKPFRARQLLQWIHKYRVVDFAEMTNLSKALREKLQAVSDI 64
Query: 62 KAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ + IS DGTRKWI + N IETVFIPE R TLC+S+QVGCA+ C FCST +
Sbjct: 65 RLPEVLHEHISTDGTRKWIIKLSCGNAIETVFIPEGGRGTLCVSSQVGCALTCTFCSTAQ 124
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL EII QLW+ L ++ +G R +TN+VMMGMGEPL NY + + A
Sbjct: 125 QGFNRNLDAAEIIAQLWIANEALGKD------PKGNRVVTNVVMMGMGEPLANYNNVVTA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+ D+ YG+S R + LSTSGI+PMIDKL ++C V LA+SLHA+N+ LR+++VPI++K
Sbjct: 179 MNLMRDDYGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAISLHAANDELRDQIVPINQK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+KEL+ AC RY+ R IT EY ML GIND+ A +L+ +++ KIN+I
Sbjct: 239 YPIKELLAACKRYVVGQQRRHITVEYVMLDGINDSMQDAKDLVRILKD----LPTKINMI 294
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP ++ CS ++IK F L+ G+ T+RK RG+DI AACGQL+G++
Sbjct: 295 PFNPFPGTDYTCSSRNQIKRFQNYLIEQGMVATVRKTRGDDIVAACGQLAGEV 347
>gi|333369698|ref|ZP_08461804.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/361 (50%), Positives = 250/361 (69%), Gaps = 16/361 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TN+L +S + +Y K++GE PFRA Q+ KWI++ GV+DF +MT+LS LR+KL +
Sbjct: 26 TNILGMSQEQLGDYFKQIGEKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLSEKACV 85
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
+ P ++ + S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 86 ETPEVVHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCALDCSF 145
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLWV + +S+ + +TN+VMMGMGEPLLNYK
Sbjct: 146 CSTGKQGFERDLTAAEIIGQLWVANASYMEGVD---SSEWQNNVTNVVMMGMGEPLLNYK 202
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ ++ L+LSDHAYGLS+R V LSTSG++P + L ++ V LA+SLHA N+ LRN+LV
Sbjct: 203 PVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDIDVALAISLHAPNDELRNELV 262
Query: 236 PISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
PI+KKYPL ELI A Y+ +PRH +T EY ML G+ND+D HA +L++L+
Sbjct: 263 PINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQLVALLEG---- 318
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
KINLIPFN FP++ S N+RI F+ IL N+G TIR+ RG+DI+AACGQL G+
Sbjct: 319 LPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQLVGQ 378
Query: 353 I 353
+
Sbjct: 379 V 379
>gi|357403874|ref|YP_004915798.1| Fe-S-cluster redox protein [Methylomicrobium alcaliphilum 20Z]
gi|351716539|emb|CCE22199.1| putative Fe-S-cluster redox enzyme [Methylomicrobium alcaliphilum
20Z]
Length = 370
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/353 (50%), Positives = 238/353 (67%), Gaps = 15/353 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + E+GE PFRA QL KW+++ GV DF++M++LS +LR +L +
Sbjct: 13 TNLLDFDRKGLEAFFVEIGEKPFRATQLLKWVYQEGVEDFSQMSNLSKALRTQLAEQCSL 72
Query: 62 KAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P I+ +QI+ DGT KW+ N IETVFIPE+ R TLC+S+Q+GCA+ C FCST +
Sbjct: 73 DTPEIVLEQIASDGTCKWVLETSCGNRIETVFIPEEGRGTLCVSSQIGCALACTFCSTAQ 132
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQL+ + +L ++ITN+VMMGMGEPLLN+ + + A
Sbjct: 133 QGFNRNLTTAEIIGQLFAAQKRL----------GSAQKITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D AYGLS+R V +STSGI+P + +L + C V LAVSLHA + LRN+LVPI+KK
Sbjct: 183 MNLMMDDFAYGLSKRRVTISTSGIVPAMYRLTEVCDVSLAVSLHAVTDELRNELVPINKK 242
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC + SPR ITFEY ML GIND+ A ++ L++ KINLI
Sbjct: 243 YPLKELLAACRDNVIRSPRRRITFEYVMLDGINDSVQDAKAMVKLLKT----VPSKINLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS+ CS + I F +L N+G+ TIRK RG+DI+AACGQL GK+
Sbjct: 299 PFNPFPNSSYRCSSSDAIDRFRAVLHNAGMVTTIRKTRGDDIDAACGQLVGKV 351
>gi|334143334|ref|YP_004536490.1| ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
gi|333964245|gb|AEG31011.1| Ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
Length = 385
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 250/354 (70%), Gaps = 14/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL + V + + +GE PFRAKQ+ KWIH+ GVSDF+ MT++S SLR+KLK + +I+
Sbjct: 18 DLLGMDHDALVTFFESIGEKPFRAKQVMKWIHQMGVSDFDLMTNISKSLREKLKQNAWIR 77
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+P I+++QIS DGT KW+ V ++N IETVFIPE +R TLCIS+QVGCA++C FC+T +Q
Sbjct: 78 SPKIIAEQISDDGTIKWLIEVDQQNSIETVFIPEADRGTLCISSQVGCALDCSFCATAQQ 137
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EII Q+WV K + N + +R+I+N+V MGMGEPLLN
Sbjct: 138 GFNRNLENWEIIAQMWVVN------KALGANPKAERKISNVVFMGMGEPLLNVTHVFPVA 191
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL++ D+AYGLS+R V +ST+G++P IDKL E V LA+SLHA NN LR++LVP++KKY
Sbjct: 192 KLLMDDNAYGLSKRRVTISTAGVVPAIDKLKAEVDVSLAISLHAPNNALRDELVPVNKKY 251
Query: 242 PLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+ L+ A RY+ ++ +H IT EY ML +ND HA +L+ L+ CK+NL
Sbjct: 252 PLEVLMPALRRYVADGHAKKH-ITVEYVMLDQVNDEIEHAHQLVGLLGD----LVCKVNL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FPN+ + S N+R+ F ++L +GI TIRK RG+DI+AACGQL+GK+
Sbjct: 307 IPFNPFPNTPYLRSSNNRVHRFQRVLHEAGINCTIRKTRGDDIDAACGQLAGKV 360
>gi|350563236|ref|ZP_08932058.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
gi|349779100|gb|EGZ33447.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
Length = 378
Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 251/354 (70%), Gaps = 14/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL L V + + +GE FRAKQ+ KWIH+ GVSDF+ MT++S LR+KLK +I+
Sbjct: 18 DLLGLDYDALVVFFESIGEKSFRAKQVMKWIHQLGVSDFDLMTNISKPLREKLKQHAWIR 77
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+P I+++Q+S DGT KW+ V ++N IETVFIPE +R TLCIS+QVGCA++C FC+T +Q
Sbjct: 78 SPKIVTEQLSDDGTIKWLIEVDQQNCIETVFIPEADRGTLCISSQVGCALDCSFCATAQQ 137
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EII Q+WV K + N + +R+I+N+V MGMGEPLLN
Sbjct: 138 GFNRNLENWEIIAQMWVAN------KALGANPKAERKISNVVFMGMGEPLLNVTHVFPVA 191
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL++ D+AYGLS+R V +ST+G++P IDKL E V LA+SLHA NN LR++LVPI+KKY
Sbjct: 192 KLLMDDNAYGLSKRRVTISTAGVVPAIDKLKDEVDVSLAISLHAPNNALRDQLVPINKKY 251
Query: 242 PLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+ L+ A HRY+ ++ +H IT EY ML +ND + HA +L+ L+ N I CK+NL
Sbjct: 252 PLEVLMPALHRYVADGHAKKH-ITVEYVMLDQVNDEEEHAHQLVELL-GNLI---CKVNL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FPN+ + S N+R+ F ++L +GI TIRK RG+DI+AACGQL+GK+
Sbjct: 307 IPFNPFPNTPYLRSSNNRVHRFQRVLHEAGINCTIRKTRGDDIDAACGQLAGKV 360
>gi|148653702|ref|YP_001280795.1| radical SAM protein [Psychrobacter sp. PRwf-1]
gi|205829828|sp|A5WGQ4.1|RLMN_PSYWF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148572786|gb|ABQ94845.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter sp. PRwf-1]
Length = 403
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 182/361 (50%), Positives = 248/361 (68%), Gaps = 16/361 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TN+L ++ + Y K +GE PFRA Q+ KWI++ GV+DF +MT+LS LR+KL I
Sbjct: 24 TNILGMNQEQLGAYFKHIGEKPFRATQVMKWIYQHGVTDFAQMTNLSKGLREKLSEQACI 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
+ P +M + S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 84 ELPEVMHKEFSEDGTRKWVFKVAGGSLVETVLIPADDSKVNGRKTLCISSQVGCALDCSF 143
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLWV + +++ + +TN+VMMGMGEPLLNY
Sbjct: 144 CSTGKQGFERDLTAAEIIGQLWVANASYMEGVD---STEWQNNVTNVVMMGMGEPLLNYT 200
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ ++ L+LSDHAYGLS+R V LSTSG++P + +L ++ V LA+SLHA N+ LRN+LV
Sbjct: 201 PVVSSMGLMLSDHAYGLSKRRVTLSTSGVVPKMYELYKDIDVALAISLHAPNDELRNELV 260
Query: 236 PISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
PI+KKYPL ELI A Y+ +PRH +T EY ML G+ND+D HA +L++L+
Sbjct: 261 PINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAQQLVALLDG---- 316
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
KINLIPFN FP++ S N+RI F+ IL N+G TIR+ RG+DI+AACGQL G+
Sbjct: 317 LPSKINLIPFNPFPHAPYDRSSNNRIHAFSNILNNAGFVCTIRQTRGDDIDAACGQLVGQ 376
Query: 353 I 353
+
Sbjct: 377 V 377
>gi|387128396|ref|YP_006297001.1| ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM1]
gi|386275458|gb|AFI85356.1| Ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM1]
Length = 368
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 246/355 (69%), Gaps = 12/355 (3%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLL L + E+GE PFRA+QL +WIH++ V+DF++M++LS SLR+KL
Sbjct: 5 LTNLLGLDLKGLEGFFIEIGEKPFRARQLLQWIHQYRVTDFDQMSNLSKSLREKLTQIAE 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+ P ++ + IS DGTRKWI + N IETVFIPE R TLC+S+QVGCA+ C FCSTG
Sbjct: 65 IRVPELLHEHISTDGTRKWIIKMDGDNSIETVFIPENGRGTLCVSSQVGCALTCTFCSTG 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ EII QLW+ L ++ +G R +TN+VMMGMGEPL NY + I
Sbjct: 125 QQGFNRNLSAAEIIAQLWIANEALGKD------PKGNRMVTNVVMMGMGEPLTNYNNVIS 178
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L+ D AYG+S R + LSTSG++PMID+L ++C V LA+SLHA+N+ LR++++P++
Sbjct: 179 AMNLMRDDLAYGISWRRLTLSTSGVVPMIDRLKEDCHVSLAISLHAANDKLRSEIIPLND 238
Query: 240 KYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KYP+ EL+ AC RY+T R IT EY ML GIND++ A +LI +++ KIN
Sbjct: 239 KYPIAELLAACKRYVTGEQLRRHITVEYVMLAGINDSEQDARDLIRILKG----LPNKIN 294
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP ++ CS + I F + L+ +G+ T+RK RG+DI AACGQL+G++
Sbjct: 295 LIPFNPFPGTDYQCSSRNVIIRFKEQLIAAGLVATVRKTRGDDIVAACGQLAGEV 349
>gi|352082098|ref|ZP_08952921.1| radical SAM enzyme, Cfr family [Rhodanobacter sp. 2APBS1]
gi|389796713|ref|ZP_10199764.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 116-2]
gi|351682236|gb|EHA65342.1| radical SAM enzyme, Cfr family [Rhodanobacter sp. 2APBS1]
gi|388448238|gb|EIM04223.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 116-2]
Length = 376
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 239/352 (67%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD ++ +LGE P+RA+Q+ KWI+ DF MTD+ +LR KL + YI
Sbjct: 12 NLLDFDRQGLRDFFTQLGEKPYRAEQVMKWIYHDLEDDFENMTDVGKALRAKLTEACYIG 71
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + D+++ DGT KW+ + N IETV+IPE R TLC+S+Q+GCA+NC FCSTG Q
Sbjct: 72 APKTLLDKVATDGTHKWLLGMDSGNAIETVYIPEPTRGTLCVSSQIGCALNCQFCSTGAQ 131
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+WV K + + R+ITN+VMMGMGEPL N+ + + A+
Sbjct: 132 GFNRNLSTAEIIGQVWVAA------KYLGNVTHQNRRITNVVMMGMGEPLANFDNVLKAM 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+ D +GL+ + V LST+G++P+ID+L++ V LAVSLHA+N+ LR +L+PI+K+Y
Sbjct: 186 KLMRDDLGFGLAAKRVTLSTAGLVPLIDQLSEAIDVSLAVSLHAANDELRTELMPINKRY 245
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ EL+ AC R+I PR ITFEY ++ G+ND HA +LI LMRK L +CK+NLIP
Sbjct: 246 PIAELLAACQRWIARKPRTSITFEYTLMQGVNDQPEHARQLIKLMRK---LPTCKVNLIP 302
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S + I F L+N+G+ +R+ RG+DI+AACGQL+G++
Sbjct: 303 FNPFPGTQFKRSDAADIHAFQTQLLNAGVLTMLRRTRGDDIDAACGQLAGQV 354
>gi|410089050|ref|ZP_11285679.1| hypothetical protein AAI_00450 [Pseudomonas viridiflava UASWS0038]
gi|409763709|gb|EKN48663.1| hypothetical protein AAI_00450 [Pseudomonas viridiflava UASWS0038]
Length = 382
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 244/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|256823058|ref|YP_003147021.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
gi|256796597|gb|ACV27253.1| radical SAM enzyme, Cfr family [Kangiella koreensis DSM 16069]
Length = 374
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/354 (50%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L+ + V + ELGE PFRA+Q+ KW+H+FGV DF++MT++S R++LK+ I
Sbjct: 6 TNLLNLTRDEMVEFFVELGEKPFRAQQVMKWVHQFGVEDFDEMTNISKVCRERLKDVAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
K P ++S Q S DGT KW + +E VFIPE++R TLC+S+QVGCA+ C FCSTG
Sbjct: 66 KGPEVLSVQESKDGTVKWALKIPGGQAVEMVFIPERHRGTLCVSSQVGCALECTFCSTGY 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQ+W+ L + + +R +TN+VMMGMGEPL N+ + +
Sbjct: 126 QGFNRNLTTAEIIGQVWLAARYLHGK-----HKSDERVVTNVVMMGMGEPLANFDPVVKS 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D AYGLS+R V LSTSG++P +D+L E V LA+SLHA N+ LR+ LVPI+KK
Sbjct: 181 MQLMMDDLAYGLSKRRVTLSTSGMVPQLDRLIDEVDVALAISLHAPNDALRDVLVPINKK 240
Query: 241 YPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+KEL+ + HRY+ S T EY ML +NDT HA EL L++ T CKINL
Sbjct: 241 YPIKELMASVHRYLDRSNAARKATIEYVMLKDVNDTLQHAKELAELLKN----TPCKINL 296
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP +N S I +F+ L+ G V R+ RG+DI+AACGQL+GKI
Sbjct: 297 IPFNPFPQANYQTSTQEAIDLFSDYLIKKGYVVVTRRTRGDDIDAACGQLAGKI 350
>gi|404403282|ref|ZP_10994866.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas fuscovaginae
UPB0736]
Length = 377
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 242/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 3 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKTVAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 63 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 123 QGFNSNLTAAEVIGQVWIANKSFG-----SIPASIDRAITNVVMMGMGEPLLNFDNVIAA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D YG+S+R V LSTSG++PMID LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 178 MRLMMDDLGYGISKRRVTLSTSGVVPMIDVLAEHIDVSLALSLHAPNDALRNQLVPINKK 237
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY +L +ND HA+E+I L++ T CKINL
Sbjct: 238 YPLKMLLESCRRYMDTLGEKRVLTVEYTLLKDVNDQVEHAVEMIELLKD----TPCKINL 293
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G++L
Sbjct: 294 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVL 348
>gi|335043890|ref|ZP_08536915.1| putative Fe-S-cluster redox enzyme [Methylophaga aminisulfidivorans
MP]
gi|333787136|gb|EGL53020.1| putative Fe-S-cluster redox enzyme [Methylophaga aminisulfidivorans
MP]
Length = 366
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 179/353 (50%), Positives = 240/353 (67%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L + EL E PFRA+QL +WIHK+ + DF +M++LS SLR+KL+ I
Sbjct: 5 TNLLGLDLHGLEAFFVELDEKPFRARQLLQWIHKYRIIDFAEMSNLSKSLREKLQAVAEI 64
Query: 62 KAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
K P +M + IS DGTRKWI + N IETVFIPE R TLC+S+QVGCA+ C FCST +
Sbjct: 65 KLPEVMHEHISQDGTRKWIIKLSCGNAIETVFIPESGRGTLCVSSQVGCALTCTFCSTAQ 124
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL EII QLW+ L ++ +G R +TN+VMMGMGEPL NY + + A
Sbjct: 125 QGFNRNLDAAEIIAQLWIANEALGKD------PKGNRVVTNVVMMGMGEPLANYSNVVTA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+ D YG+S R + LSTSGI+PMIDKL ++C V LA+SLHA+N+ LR+++VPI++K
Sbjct: 179 MNLMRDDFGYGISWRRLTLSTSGIVPMIDKLREDCHVSLAISLHAANDELRDQIVPINQK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC RY+ R IT EY ML GIND+ A +L+ L++ KINLI
Sbjct: 239 YPIAELLAACKRYVVGQQRRHITVEYVMLDGINDSIQDAKDLVRLLKG----LPNKINLI 294
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP ++ CS ++I F + L++ G+ T+RK RG+DI AACGQL+G++
Sbjct: 295 PFNPFPGTHYKCSSRNQIVRFQQYLIDQGLVATVRKTRGDDIVAACGQLAGEV 347
>gi|389704826|ref|ZP_10185930.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
gi|388611070|gb|EIM40179.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
Length = 411
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 251/362 (69%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH+F V+DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRPQMEKFFEDMGEKKFRAGQVMKWIHQFFVTDFAEMTNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHKNYSKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+L+ EIIGQLW+ + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLSQAEIIGQLWMANYSYMEDVPV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL+ LI AC RYIT S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLEHLIAACQRYITKDGNESARKHVTIEYVMLDGVNDKPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|383317241|ref|YP_005378083.1| 2-vinyl bacteriochlorophyllide hydratase [Frateuria aurantia DSM
6220]
gi|379044345|gb|AFC86401.1| 23S rRNA m2A2503 methyltransferase [Frateuria aurantia DSM 6220]
Length = 370
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 237/353 (67%), Gaps = 10/353 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +Y +LGE P+RA+Q+ KW++ VSDF +MTD+ +LR KL Y+
Sbjct: 8 NLLDFDRQGLRDYFAQLGEKPYRAEQVMKWMYHHLVSDFEQMTDVGKALRAKLSEVCYVG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + D+ + DGT KW+ + N IETV+IPE R TLC+S+QVGCA+NC FCST Q
Sbjct: 68 PPATLFDKGAVDGTHKWLLGMDGGNAIETVYIPEPTRGTLCVSSQVGCALNCQFCSTATQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+WV K + + +R+ITN+VMMGMGEPL N+ + I A+
Sbjct: 128 GFNRNLSTAEIIGQVWVAA------KQLGNYTHQRRRITNVVMMGMGEPLANFDNVIKAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D +GL+ + V LST+G++PMIDKL+ V LAVSLHA+N+ LR +LVP++K+Y
Sbjct: 182 SLMRDDLGFGLASKRVTLSTAGMVPMIDKLSDAMDVSLAVSLHAANDELRTELVPLNKRY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ EL+ C R++ PR ITFEY ++ GIND +HA +LI LMRK L CK+NLIP
Sbjct: 242 PIDELVACCQRWLARRPRTSITFEYTLMKGINDQPLHARQLIKLMRK---LPQCKVNLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN FP + S+ I+ F L+N+G+ +R+ RG+DI+AACGQL G++L
Sbjct: 299 FNPFPGTRYERSEPETIRDFQTQLLNAGVLTMLRRTRGDDIDAACGQLKGQVL 351
>gi|213971521|ref|ZP_03399632.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
gi|301386126|ref|ZP_07234544.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato Max13]
gi|302060174|ref|ZP_07251715.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato K40]
gi|302135117|ref|ZP_07261107.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213923713|gb|EEB57297.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato T1]
Length = 382
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 244/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MRLMMDDLGYGISKRRVTLSTSGVVPMIDELSRHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL+ L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
Length = 378
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 242/354 (68%), Gaps = 15/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L P K + + + +GE FRA Q+ KWIH+ G DF++MTD+S +LR KLK+ I+
Sbjct: 15 NLLGLPPKKMIEFFESIGEKKFRATQVLKWIHQKGADDFDQMTDVSKALRHKLKDISEIR 74
Query: 63 APHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
AP ++S IS DGTRKWI + N +ETV IP+ +R TLC+S+QVGC+++C FCSTG
Sbjct: 75 APEVVSQNISNDGTRKWIIRTEGGGNNCVETVLIPDGDRATLCVSSQVGCSLDCSFCSTG 134
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT E+IGQ+WV + G R++TN+VMMGMGEPL+N++ +
Sbjct: 135 KQGFNRNLTPSEVIGQVWVAIKSFG-----PFDPNGPRRVTNVVMMGMGEPLMNFEPVVD 189
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L++ D+AYG+S+R V LSTSG++P I +LA+ V LA+SLHA N LR+ LVPI+K
Sbjct: 190 AMTLMMDDNAYGMSKRRVTLSTSGVVPKIYELAERTDVSLAISLHAPTNELRDVLVPINK 249
Query: 240 KYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYP+ EL+ AC Y+T P RH IT EY M+ G+ND++ A L L++ CKI
Sbjct: 250 KYPINELLGACQHYLTSLPDKRH-ITIEYTMMAGVNDSEEQARALSKLLK----TLECKI 304
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
NLIPFN FPNS N++++ F K+L + G VT+R RG+DI+AACGQL G
Sbjct: 305 NLIPFNPFPNSGYDKPSNNQVRRFQKVLADDGYTVTVRTTRGDDIDAACGQLVG 358
>gi|50083794|ref|YP_045304.1| Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
gi|81393776|sp|Q6FEM6.1|RLMN_ACIAD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
[Acinetobacter sp. ADP1]
Length = 414
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 180/362 (49%), Positives = 249/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S ++ + +++GE FRA Q+ KWIH++ V+D +MT++S LR KL+ IK
Sbjct: 35 NLLGMSRIELEQFFEQIGEKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLEQVCEIK 94
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 95 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 154
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLWV + + ++ R +TN+VMMGMGEPLLN+K
Sbjct: 155 CSTGKQGFQRDLTPAEIIGQLWVANQSYVEDVPV---AERTRAVTNVVMMGMGEPLLNFK 211
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ ++ ++L D+AYG+S+R V LSTSG++PMIDKLA+E V LA+SLHA NN LR++LV
Sbjct: 212 PVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEELDVALAISLHAPNNPLRDELV 271
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI A RYIT S R +T EY ML G+ND HA +L+ L++
Sbjct: 272 PINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHPEHAQQLVKLLKN--- 328
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 329 -LPSKINLIPFNPFPHAPYGRSSRNRIMAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 387
Query: 352 KI 353
++
Sbjct: 388 QV 389
>gi|422671333|ref|ZP_16730699.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273]
gi|330969073|gb|EGH69139.1| hypothetical protein PSYAR_01077 [Pseudomonas syringae pv. aceris
str. M302273]
Length = 382
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|66044493|ref|YP_234334.1| hypothetical protein Psyr_1245 [Pseudomonas syringae pv. syringae
B728a]
gi|75503082|sp|Q4ZX26.1|RLMN_PSEU2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|63255200|gb|AAY36296.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas syringae pv.
syringae B728a]
Length = 382
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|402698607|ref|ZP_10846586.1| hypothetical protein PfraA_02215 [Pseudomonas fragi A22]
Length = 382
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 175/354 (49%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPQMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATADRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRSQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCRRYMSTLGEKRVLTVEYTMLKDINDHVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQV 352
>gi|229592444|ref|YP_002874563.1| hypothetical protein PFLU5060 [Pseudomonas fluorescens SBW25]
gi|440741229|ref|ZP_20920678.1| hypothetical protein A986_22863 [Pseudomonas fluorescens BRIP34879]
gi|447918225|ref|YP_007398793.1| hypothetical protein H045_16170 [Pseudomonas poae RE*1-1-14]
gi|259491993|sp|C3K1L7.1|RLMN_PSEFS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|229364310|emb|CAY52051.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
gi|440373210|gb|ELQ09975.1| hypothetical protein A986_22863 [Pseudomonas fluorescens BRIP34879]
gi|445202088|gb|AGE27297.1| hypothetical protein H045_16170 [Pseudomonas poae RE*1-1-14]
Length = 382
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKN----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|395500506|ref|ZP_10432085.1| hypothetical protein PPAM2_30665 [Pseudomonas sp. PAMC 25886]
gi|395799020|ref|ZP_10478302.1| hypothetical protein A462_27168 [Pseudomonas sp. Ag1]
gi|421138873|ref|ZP_15598925.1| radical SAM enzyme, Cfr family protein [Pseudomonas fluorescens
BBc6R8]
gi|395336707|gb|EJF68566.1| hypothetical protein A462_27168 [Pseudomonas sp. Ag1]
gi|404510016|gb|EKA23934.1| radical SAM enzyme, Cfr family protein [Pseudomonas fluorescens
BBc6R8]
Length = 382
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAAQVMKWIHHLGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY ML IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKN----VPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|388467704|ref|ZP_10141914.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas synxantha BG33R]
gi|388011284|gb|EIK72471.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas synxantha BG33R]
Length = 382
Score = 363 bits (932), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCQRYMATLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKN----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|387895486|ref|YP_006325783.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas fluorescens
A506]
gi|423693449|ref|ZP_17667969.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens SS101]
gi|387162859|gb|AFJ58058.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens A506]
gi|387998288|gb|EIK59617.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens SS101]
Length = 382
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY ML +ND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCQRYMATLGEKRVLTIEYTMLKDVNDKLEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|237800040|ref|ZP_04588501.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022895|gb|EGI02952.1| radical SAM protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 382
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL+ L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|422297377|ref|ZP_16385015.1| radical SAM enzyme, Cfr family [Pseudomonas avellanae BPIC 631]
gi|422587126|ref|ZP_16661797.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|422652852|ref|ZP_16715629.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330872882|gb|EGH07031.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330965912|gb|EGH66172.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|407991223|gb|EKG33126.1| radical SAM enzyme, Cfr family [Pseudomonas avellanae BPIC 631]
Length = 382
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL+ L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|289626156|ref|ZP_06459110.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289649062|ref|ZP_06480405.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|422584772|ref|ZP_16659873.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330869580|gb|EGH04289.1| radical SAM protein [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 382
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL+ L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|289677951|ref|ZP_06498841.1| hypothetical protein PsyrpsF_31988 [Pseudomonas syringae pv.
syringae FF5]
gi|302185748|ref|ZP_07262421.1| hypothetical protein Psyrps6_05363 [Pseudomonas syringae pv.
syringae 642]
gi|422616365|ref|ZP_16685071.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072]
gi|424071090|ref|ZP_17808517.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440720311|ref|ZP_20900730.1| hypothetical protein A979_05905 [Pseudomonas syringae BRIP34876]
gi|440726439|ref|ZP_20906693.1| hypothetical protein A987_10307 [Pseudomonas syringae BRIP34881]
gi|443645105|ref|ZP_21128955.1| 23S Ribosomal RNA methyltransferase N [Pseudomonas syringae pv.
syringae B64]
gi|330895885|gb|EGH28170.1| hypothetical protein PSYJA_03834 [Pseudomonas syringae pv. japonica
str. M301072]
gi|407999549|gb|EKG39931.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|440366347|gb|ELQ03431.1| hypothetical protein A979_05905 [Pseudomonas syringae BRIP34876]
gi|440366600|gb|ELQ03679.1| hypothetical protein A987_10307 [Pseudomonas syringae BRIP34881]
gi|443285122|gb|ELS44127.1| 23S Ribosomal RNA methyltransferase N [Pseudomonas syringae pv.
syringae B64]
Length = 382
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVP++KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|440744297|ref|ZP_20923601.1| hypothetical protein A988_12848 [Pseudomonas syringae BRIP39023]
gi|440374311|gb|ELQ11047.1| hypothetical protein A988_12848 [Pseudomonas syringae BRIP39023]
Length = 382
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVP++KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCRRYMSNLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|71738083|ref|YP_273575.1| radical SAM protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257487201|ref|ZP_05641242.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|416018175|ref|ZP_11565169.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|416025545|ref|ZP_11569279.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422403702|ref|ZP_16480759.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|422594704|ref|ZP_16668994.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422679836|ref|ZP_16738109.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|123761313|sp|Q48LZ7.1|RLMN_PSE14 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71558636|gb|AAZ37847.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159497|gb|EFI00544.1| 23S rRNA m(2)A2503 methyltransferase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322924|gb|EFW79014.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320329953|gb|EFW85941.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330874705|gb|EGH08854.1| radical SAM protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330985011|gb|EGH83114.1| radical SAM protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331009183|gb|EGH89239.1| radical SAM protein [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 382
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL+ L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLQMLLDSCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
gi|381197790|ref|ZP_09905129.1| putative Fe-S-cluster redox enzyme [Acinetobacter lwoffii WJ10621]
gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
Length = 411
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 250/362 (69%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH+F V+DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRPQLEKFFEDMGEKKFRAGQVMKWIHQFFVTDFAEMTNISGKLREKLEKLCEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKNRN----TLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++R+ TLCIS+QVGCA++C F
Sbjct: 92 APEVVHKNYSKDGTRKWVFRVGEGEGSLVETVLIPAEHRSGLRRTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+L EIIGQLWV + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLNPDEIIGQLWVANYSYMEDVPV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVNDHPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|28868638|ref|NP_791257.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|422660785|ref|ZP_16723190.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|81732046|sp|Q886Z3.1|RLMN_PSESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|28851876|gb|AAO54952.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331019383|gb|EGH99439.1| radical SAM enzyme, Cfr family protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 382
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVP++KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|424066438|ref|ZP_17803904.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408002287|gb|EKG42546.1| radical SAM enzyme, Cfr family [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 387
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 13 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKACAEV 72
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 73 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 132
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 133 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 187
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVP++KK
Sbjct: 188 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKK 247
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 248 YPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 304 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 358
>gi|386815051|ref|ZP_10102269.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
gi|386419627|gb|EIJ33462.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
Length = 409
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 179/354 (50%), Positives = 239/354 (67%), Gaps = 13/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD S Y +GE PFRA QL KW+H+ V ++MT++S LR+ L + I+
Sbjct: 50 NLLDFSHEGMKAYFTSIGEKPFRATQLIKWLHQMNVGSVDQMTNISKPLRQFLTENTVIR 109
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I+ DQ S DGT KW+ + N IETVFIPE +R TLC+S+QVGCA++C FCST RQ
Sbjct: 110 APQIIMDQHSADGTHKWLLRLDDGNAIETVFIPEDDRGTLCVSSQVGCALDCTFCSTARQ 169
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQLWV + + ++ + G R I+N+VMMGMGEPLLN+ + AL
Sbjct: 170 GFNRNLTTAEIIGQLWVAK------RTLQADPGGARVISNVVMMGMGEPLLNFDNVANAL 223
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+AYGLS+R V LSTSG++P + +LA V LAVSLHA NN +RN+LVP+++KY
Sbjct: 224 MLMMDDNAYGLSKRRVTLSTSGVLPALARLADTMDVSLAVSLHAPNNEVRNQLVPLNRKY 283
Query: 242 PLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P++EL+ C +++ + R+ IT+EY ML GIND D HA +L+ L++ KINL
Sbjct: 284 PIQELMAVCRQFLAKKTTERNHITWEYVMLEGINDKDEHAHQLVKLLKG----IPSKINL 339
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP + S N+RI F IL +G V RK RG DI+AACGQL+G++
Sbjct: 340 IPFNPFPETRYKRSSNNRIHRFRDILAAAGYTVITRKTRGEDIDAACGQLAGQV 393
>gi|398874325|ref|ZP_10629536.1| 23S rRNA methyltransferase [Pseudomonas sp. GM74]
gi|398195394|gb|EJM82441.1| 23S rRNA methyltransferase [Pseudomonas sp. GM74]
Length = 381
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK+ +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKSVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSNLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|422643971|ref|ZP_16707110.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330957524|gb|EGH57784.1| radical SAM protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 382
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 243/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDVMTNVSKALREKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL+ L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLQMLLESCRRYMSSLGEKRVLTIEYTMLKDINDQVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|257453867|ref|ZP_05619145.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
gi|257448794|gb|EEV23759.1| radical SAM enzyme, Cfr family [Enhydrobacter aerosaccus SK60]
Length = 399
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/361 (50%), Positives = 247/361 (68%), Gaps = 16/361 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL +S + + +LGE PFRA Q+ KWI++FGV+DF +MT+LS L++ L +
Sbjct: 22 TNLLGMSKAELGQFFADLGEKPFRATQVMKWIYQFGVTDFYQMTNLSKKLQETLDEVATV 81
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
P + Q S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 82 SPPTVKFKQFSEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQVGCALDCSF 141
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+L+ EIIGQLWV +N+ + + R +TN+VMMGMGEPLLNY+
Sbjct: 142 CSTGKQGFERDLSPSEIIGQLWVANQSYM--ENVPVTERENR-VTNVVMMGMGEPLLNYE 198
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ ++ L+L D +GLS+R V LSTSGI+P + +LA++ V LA+SLHA N+ LRN+LV
Sbjct: 199 PVVASMSLMLDDFGFGLSKRRVTLSTSGIVPKMYELAKDIDVALAISLHAPNDELRNELV 258
Query: 236 PISKKYPLKELILACHRYI-TYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
PI+KKYPLKELI A Y+ +PRH +T EY ML +NDTD HA +L++L++
Sbjct: 259 PINKKYPLKELIAAAKSYVYDENPRHKKHVTIEYVMLKDVNDTDEHARQLVNLLKD---- 314
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
CKINLIPFN FP++ S N+RI F+ IL +G TIR+ RG+DI+AACGQL G+
Sbjct: 315 LPCKINLIPFNPFPHAPYGRSSNNRIHAFSNILNQAGFVCTIRQTRGDDIDAACGQLVGQ 374
Query: 353 I 353
+
Sbjct: 375 V 375
>gi|424743184|ref|ZP_18171497.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
gi|422943445|gb|EKU38461.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
Length = 411
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 248/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ ++DF +MT++S LR KL+ IK
Sbjct: 32 NLLGMSRTELEKFFEDIGEKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKLEQICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375137029|ref|YP_004997679.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|427423139|ref|ZP_18913305.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|425700239|gb|EKU69830.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
Length = 411
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 249/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 32 NLLGMSRPELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRHYSKDGTRKWVFRVGEGAGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|333908814|ref|YP_004482400.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
posidonica IVIA-Po-181]
gi|333478820|gb|AEF55481.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
posidonica IVIA-Po-181]
Length = 371
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 176/354 (49%), Positives = 243/354 (68%), Gaps = 15/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LSP K + + + +GE FRA Q+ KWIH+ G F++MTD+S +LR KL+ I+
Sbjct: 8 NLLGLSPTKLIEFFESIGEKKFRATQVMKWIHQKGAESFDEMTDVSKALRAKLETICEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
AP ++S IS DGTRKWI K + +ETV IP+ +R TLC+S+QVGC+++C FCSTG
Sbjct: 68 APEVVSQNISKDGTRKWIIRTEGGKNDCVETVLIPDGDRATLCVSSQVGCSLDCSFCSTG 127
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+W+ ++ G R++TN+VMMGMGEPL+N++ +
Sbjct: 128 KQGFNRNLTPAEIIGQVWIAIKSFG-----PMDPNGPRRVTNVVMMGMGEPLMNFEPVVD 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L++ D+AYGLS+R V LSTSG++P I +L + V LA+SLHA NN LR++LVPI++
Sbjct: 183 AMILMMHDNAYGLSKRRVTLSTSGVVPKIYELIKRTDVSLAISLHAPNNPLRDELVPINR 242
Query: 240 KYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYP+ ELI AC Y+ P RH IT EY ++ G+ND + A EL+ L++ CK+
Sbjct: 243 KYPIAELIEACQHYLANLPDKRH-ITIEYTLMSGVNDNEEQAHELVELLKD----LECKV 297
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
NLIPFN FP+S N+R + F KIL ++G VT+R RG+DI+AACGQL G
Sbjct: 298 NLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDIDAACGQLVG 351
>gi|299771620|ref|YP_003733646.1| hypothetical protein AOLE_16930 [Acinetobacter oleivorans DR1]
gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter oleivorans DR1]
Length = 411
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 248/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ ++DF +MT++S LR KL+ IK
Sbjct: 32 NLLGMSRTELEKFFEDIGEKKFRAGQVMKWIHQYFITDFAEMTNISGKLRAKLEQICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|408480037|ref|ZP_11186256.1| hypothetical protein PsR81_05719 [Pseudomonas sp. R81]
Length = 382
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVISA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY +L IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|403051770|ref|ZP_10906254.1| putative Fe-S-cluster redox enzyme [Acinetobacter bereziniae LMG
1003]
gi|445414088|ref|ZP_21433813.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
gi|444764907|gb|ELW89212.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
Length = 416
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +E+GE FRA Q+ KWIH+F V+DF +MT++S LR+KL+ IK
Sbjct: 37 NLLGMSRPQLEKFFEEMGEKKFRAGQVMKWIHQFFVTDFAEMTNISGKLREKLERICEIK 96
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 97 APEVVHRNYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 156
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+L EIIGQLW+ + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 157 CSTGKQGFQRDLLPDEIIGQLWMANYSYMEDVPV---AERERSVTNVVMMGMGEPLLNYD 213
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 214 AVLSSMNIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 273
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 274 PINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDQPEHAQQMIKLLKN--- 330
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 331 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 389
Query: 352 KI 353
++
Sbjct: 390 QV 391
>gi|407715866|ref|YP_006837146.1| ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
gi|407256202|gb|AFT66643.1| Ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
Length = 359
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 235/352 (66%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L + E+GE PFRAKQ+ KWIH+ G+SDF MT++S LR L + ++
Sbjct: 6 NLLNLDRKGLETFFTEIGEKPFRAKQVLKWIHQEGISDFELMTNISKGLRTHLADIAEVR 65
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ +Q S DGT KW+ + +N IETVFIPE+ R TLC+S+QVGCA+ C FCST Q
Sbjct: 66 VPEIVFEQKSDDGTYKWVLELDGQNRIETVFIPEEGRGTLCVSSQVGCALECTFCSTATQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQ+WV L+ GK +TN+VMMGMGEPLLN+ +T+ AL
Sbjct: 126 GFNRNLSVAEIIGQVWVAVKALK----------GKANLTNVVMMGMGEPLLNFNNTVTAL 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D AYGL++R V +STSG++P + +LA+ LAVSLHA N+ LRN+LVPI+KKY
Sbjct: 176 NLMMDDFAYGLAKRRVTVSTSGVVPAMYRLAEVSDASLAVSLHAPNDELRNELVPINKKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ EL+ AC YI R ITFEY ML G+ND+ A EL L+ K+NLIP
Sbjct: 236 PIAELLEACKYYIKGEKRRKITFEYVMLSGVNDSVEQAHELKRLLAD----VPSKVNLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPN++ S N+ I F +L +G+ T RK RG+DI+AACGQL GK+
Sbjct: 292 FNPFPNTHYKRSSNNAIHRFTNVLKEAGLITTTRKTRGDDIDAACGQLVGKV 343
>gi|312962908|ref|ZP_07777395.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens WH6]
gi|311282935|gb|EFQ61529.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens WH6]
Length = 382
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FG+ DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGIDDFDAMTNVSKALRDKLKTIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVISA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ T + ++T EY +L IND HAIE+I L++ T CKINL
Sbjct: 243 YPLKMLLESCQRYMATLGEKRVLTIEYTLLKDINDKVEHAIEMIELLKN----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|398915995|ref|ZP_10657563.1| 23S rRNA methyltransferase [Pseudomonas sp. GM49]
gi|398924360|ref|ZP_10661149.1| 23S rRNA methyltransferase [Pseudomonas sp. GM48]
gi|398173485|gb|EJM61319.1| 23S rRNA methyltransferase [Pseudomonas sp. GM48]
gi|398175524|gb|EJM63273.1| 23S rRNA methyltransferase [Pseudomonas sp. GM49]
Length = 380
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 242/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSNLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398893847|ref|ZP_10646356.1| 23S rRNA methyltransferase [Pseudomonas sp. GM55]
gi|398183469|gb|EJM70952.1| 23S rRNA methyltransferase [Pseudomonas sp. GM55]
Length = 382
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 242/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|358010804|ref|ZP_09142614.1| UPF0063 protein yfgB [Acinetobacter sp. P8-3-8]
Length = 411
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 249/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH+F V++F +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRPQLEKFFEDLGEKKFRAGQVMKWIHQFFVTNFAEMTNISGKLREKLERICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRNYSKDGTRKWVFRVGDGDGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLWV + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWVANYSYMEDVAV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYI----TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLEQLIAACQRYIGKDGNESSRKHVTIEYVMLEGVNDQPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|422628419|ref|ZP_16693628.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330936987|gb|EGH41085.1| hypothetical protein PSYPI_01075 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 382
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 242/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +L +KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALSEKLKACAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V+ + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVESGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVP++KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPLNKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY ML IND HA+E+I L++ T CKINL
Sbjct: 243 YPLKVLLESCRRYMSSLGEKRVLTIEYTMLKDINDKVEHAVEMIELLKD----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDLLHQAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|398952438|ref|ZP_10674786.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM33]
gi|398155192|gb|EJM43646.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM33]
Length = 382
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 242/355 (68%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 176/362 (48%), Positives = 249/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KW+H++ ++DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRTELEKFFEDIGEKKFRAGQVMKWMHQYFITDFAEMTNISGKLREKLEQICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|262371647|ref|ZP_06064926.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
junii SH205]
gi|262311672|gb|EEY92757.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
junii SH205]
Length = 411
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 180/362 (49%), Positives = 249/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +ELGE FRA Q+ KWIH++ V+DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRTELEAFFEELGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRNYSKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGARKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPV---AERERTVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RY+ S R +T EY ML G+ND HA +L+ L+
Sbjct: 269 PINKKYPLAQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQPEHAQQLLKLL----K 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 325 NLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|389808181|ref|ZP_10204591.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter thiooxydans
LCS2]
gi|388443059|gb|EIL99218.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter thiooxydans
LCS2]
Length = 376
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 237/352 (67%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD ++ ++GE P+RA+Q+ KWI+ +F MTD+ +LR KL + YI
Sbjct: 12 NLLDFDRQGLRDFFTQIGEKPYRAEQVMKWIYHDLEDNFENMTDVGKALRAKLTEACYIG 71
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + D+++ DGT KW+ + N IETV+IPE R TLC+S+Q+GCA+NC FCSTG Q
Sbjct: 72 APKTLLDKVATDGTHKWLLGMDSGNAIETVYIPEPTRGTLCVSSQIGCALNCQFCSTGAQ 131
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+WV K + + R+ITN+VMMGMGEPL N+ + + A+
Sbjct: 132 GFNRNLSTAEIIGQVWVAA------KYLGNVTHQNRRITNVVMMGMGEPLANFDNVLKAM 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+ D +GL+ + V LST+G++P+ID+L+ V LAVSLHA+N+ LR +L+PI+K+Y
Sbjct: 186 KLMRDDLGFGLAAKRVTLSTAGLVPLIDQLSDAIDVSLAVSLHAANDELRTELMPINKRY 245
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC R+I PR ITFEY ++ G+ND HA +LI LMRK L +CK+NLIP
Sbjct: 246 PLAELLAACQRWIARKPRTSITFEYTLMQGVNDQPEHARQLIKLMRK---LPTCKVNLIP 302
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S I F L+N+G+ +R+ RG+DI+AACGQL+G++
Sbjct: 303 FNPFPGTQFKRSAPEDIHQFQTQLLNAGVLTMLRRTRGDDIDAACGQLAGQV 354
>gi|226954474|ref|ZP_03824938.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
gi|294651490|ref|ZP_06728803.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
gi|226834823|gb|EEH67206.1| radical SAM protein [Acinetobacter sp. ATCC 27244]
gi|292822640|gb|EFF81530.1| Fe-S-cluster oxidoreductase [Acinetobacter haemolyticus ATCC 19194]
Length = 413
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH++ V+DF +MT++S LR+KL+ IK
Sbjct: 34 NLLGMSRAELEKFFEDLGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKLEKICEIK 93
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 94 APEVVHRNYSKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGARKTLCISSQVGCALDCSF 153
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 154 CSTGKQGFQRDLTPAEIIGQLWMANYSYMEEVPV---AERERTVTNVVMMGMGEPLLNYD 210
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 211 AVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 270
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RY+ S R +T EY ML G+ND HA + K
Sbjct: 271 PINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQPEHA----QQLLKLLK 326
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 327 NLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 386
Query: 352 KI 353
++
Sbjct: 387 QV 388
>gi|421855029|ref|ZP_16287411.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403189529|dbj|GAB73612.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 411
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 180/362 (49%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + N+ ++LGE FRA Q+ KW+H++ V+DF +MT++S LR KL+ IK
Sbjct: 32 NLLGMSRAELENFFEKLGEKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAKLEQLCEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRHYSKDGTRKWVFRVGDGTGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLWV + + ++ R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPV---AERTRSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYI----TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND+ HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQMIRLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|425745643|ref|ZP_18863686.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-323]
gi|425488081|gb|EKU54421.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-323]
Length = 411
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/362 (49%), Positives = 249/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH++ V+DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRAELEKFFEDLGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRNYSKDGTRKWVFRVGDGEGSLVETVLIPADDKTGARKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPAEIIGQLWMANYSYMEEVPV---AERERTVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYI----TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RY+ S R +T EY ML G+ND HA +L+ L+
Sbjct: 269 PINKKYPLQQLIAACQRYLGKDGNESSRRHVTIEYVMLEGVNDQPEHAQQLLKLL----K 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 325 NLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|421464220|ref|ZP_15912910.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|400204973|gb|EJO35954.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
Length = 411
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 180/362 (49%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + N+ ++LGE FRA Q+ KW+H++ V+DF +MT++S LR KL+ IK
Sbjct: 32 NLLGMSRAELENFFEKLGEKKFRAGQVMKWMHQYFVTDFAEMTNISGKLRAKLEQLCEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGLRKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLWV + + ++ R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPDEIIGQLWVANQSYMEDVPV---AERTRSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYI----TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND+ HA ++I L++
Sbjct: 269 PINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQMIRLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIIAFQKALSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|407363609|ref|ZP_11110141.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
mandelii JR-1]
Length = 380
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|152995382|ref|YP_001340217.1| radical SAM protein [Marinomonas sp. MWYL1]
gi|205829788|sp|A6VV03.1|RLMN_MARMS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150836306|gb|ABR70282.1| radical SAM enzyme, Cfr family [Marinomonas sp. MWYL1]
Length = 371
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 241/354 (68%), Gaps = 15/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LSP K + + + +GE FRA Q+ KWIH+ G F +MTD+S +LR KL+ I+
Sbjct: 8 NLLGLSPEKLIEFFESIGEKKFRATQVIKWIHQKGAESFEEMTDVSKALRAKLEQICEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
P ++S IS DGTRKWI K + +ETV IP+ +R TLC+S+QVGC+++C FCSTG
Sbjct: 68 GPEVVSQNISTDGTRKWIIRTEGGKNDCVETVLIPDGDRATLCVSSQVGCSLDCSFCSTG 127
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+W+ ++ G R++TN+VMMGMGEPL+N++ +
Sbjct: 128 KQGFNRNLTPAEIIGQVWIAIKSFG-----PMDPNGPRRVTNVVMMGMGEPLMNFEPVVD 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L++ DHAYGLS+R V LSTSG++P I +L + V LA+SLHA N+ LRN+LVPI+K
Sbjct: 183 AMILMMHDHAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLAISLHAPNDALRNELVPINK 242
Query: 240 KYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYP+ EL+ AC Y+ P RH IT EY ++ G+ND + A EL L++ + CKI
Sbjct: 243 KYPIAELLEACQFYLENLPDKRH-ITIEYTLMSGVNDNEEQAHELAELLK----VLECKI 297
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
NLIPFN FP+S N+R + F KIL ++G VT+R RG+DI+AACGQL G
Sbjct: 298 NLIPFNPFPHSGYEKPSNNRTRRFQKILADAGYTVTVRTTRGDDIDAACGQLVG 351
>gi|399003840|ref|ZP_10706489.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM18]
gi|398121584|gb|EJM11207.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM18]
Length = 382
Score = 360 bits (923), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 241/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK I
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----VPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|70732281|ref|YP_262037.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Pseudomonas protegens Pf-5]
gi|123748356|sp|Q4K6U6.1|RLMN_PSEF5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|68346580|gb|AAY94186.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas protegens Pf-5]
Length = 382
Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKD----VPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398965245|ref|ZP_10680872.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM30]
gi|398147360|gb|EJM36070.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM30]
Length = 382
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATIDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKD----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
Length = 373
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 240/354 (67%), Gaps = 15/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LSP K V + + +GE FRA Q+ KWIH+ G F +MTD+S LR KL+ I+
Sbjct: 8 NLLGLSPEKLVEFFESIGEKKFRATQVMKWIHQKGAESFEEMTDVSKKLRAKLEGICEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI---IETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
AP I+ IS DGTRKWI + + +ETV IP+ +R TLC+S+QVGC+++C FCSTG
Sbjct: 68 APEIVEQNISTDGTRKWIIRTEGGMNDCVETVLIPDGDRATLCVSSQVGCSLDCSFCSTG 127
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQLW+ ++ G R++TN+VMMGMGEPL+N++ +
Sbjct: 128 KQGFNRNLTPAEIIGQLWIAIKSFG-----PMDPNGPRRVTNVVMMGMGEPLMNFEPVVD 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L++ D+AYGLS+R V LSTSG++P I +L + V LA+SLHA NN LR++LVPI++
Sbjct: 183 AMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDVSLAISLHAPNNPLRDELVPINR 242
Query: 240 KYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYP++EL+ AC Y+ P RH IT EY M+ G+ND + HA EL L++ CK+
Sbjct: 243 KYPIEELLEACQHYLDNLPDKRH-ITIEYTMMAGVNDQEQHARELAHLLKD----LECKV 297
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
NLIPFN FP+S N++ + F KIL + G VT+R RG+DI+AACGQL G
Sbjct: 298 NLIPFNPFPHSGYEKPSNNQTRRFQKILADDGYTVTVRTTRGDDIDAACGQLVG 351
>gi|398990012|ref|ZP_10693223.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM24]
gi|399015188|ref|ZP_10717464.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM16]
gi|398109199|gb|EJL99138.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM16]
gi|398145664|gb|EJM34442.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM24]
Length = 382
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKVIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I+L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIALLKD----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|389686009|ref|ZP_10177332.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis O6]
gi|399009190|ref|ZP_10711632.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM17]
gi|425901324|ref|ZP_18877915.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|388550351|gb|EIM13621.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis O6]
gi|397883376|gb|EJK99862.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|398113467|gb|EJM03314.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM17]
Length = 382
Score = 359 bits (922), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 241/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVISA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I+L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIALLKD----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398937801|ref|ZP_10667467.1| 23S rRNA methyltransferase [Pseudomonas sp. GM41(2012)]
gi|398166569|gb|EJM54663.1| 23S rRNA methyltransferase [Pseudomonas sp. GM41(2012)]
Length = 382
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ L+ + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQLEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDFDAMTNVSKALRDKLKVIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|218889910|ref|YP_002438774.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
gi|218770133|emb|CAW25895.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa LESB58]
Length = 379
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK S I+
Sbjct: 10 NLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKASAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 70 GPEIVSQDISADGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 130 GFNSDLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMIDKL + V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 185 NIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPINKKY 244
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L +ND HA ++I+L++ T CKINLI
Sbjct: 245 PLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKD----TPCKINLI 300
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F +L G VT+R RG+DI+AACGQL G+++
Sbjct: 301 PFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQLVGQVM 354
>gi|15599001|ref|NP_252495.1| hypothetical protein PA3806 [Pseudomonas aeruginosa PAO1]
gi|107103326|ref|ZP_01367244.1| hypothetical protein PaerPA_01004395 [Pseudomonas aeruginosa PACS2]
gi|116051831|ref|YP_789326.1| hypothetical protein PA14_14830 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296387679|ref|ZP_06877154.1| hypothetical protein PaerPAb_05972 [Pseudomonas aeruginosa PAb1]
gi|313109224|ref|ZP_07795192.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
gi|355639717|ref|ZP_09051327.1| cfr family radical SAM enzyme [Pseudomonas sp. 2_1_26]
gi|386057199|ref|YP_005973721.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa M18]
gi|386067897|ref|YP_005983201.1| hypothetical protein NCGM2_4993 [Pseudomonas aeruginosa NCGM2.S1]
gi|392982467|ref|YP_006481054.1| hypothetical protein PADK2_05295 [Pseudomonas aeruginosa DK2]
gi|416856966|ref|ZP_11912445.1| hypothetical protein PA13_11338 [Pseudomonas aeruginosa 138244]
gi|416879311|ref|ZP_11920764.1| hypothetical protein PA15_21843 [Pseudomonas aeruginosa 152504]
gi|418585955|ref|ZP_13150001.1| hypothetical protein O1O_14788 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589832|ref|ZP_13153751.1| hypothetical protein O1Q_04533 [Pseudomonas aeruginosa MPAO1/P2]
gi|419757096|ref|ZP_14283441.1| hypothetical protein CF510_29295 [Pseudomonas aeruginosa
PADK2_CF510]
gi|421152382|ref|ZP_15611962.1| hypothetical protein PABE171_1306 [Pseudomonas aeruginosa ATCC
14886]
gi|421165943|ref|ZP_15624221.1| hypothetical protein PABE177_1048 [Pseudomonas aeruginosa ATCC
700888]
gi|421172942|ref|ZP_15630697.1| hypothetical protein PACI27_1181 [Pseudomonas aeruginosa CI27]
gi|421179024|ref|ZP_15636621.1| hypothetical protein PAE2_1070 [Pseudomonas aeruginosa E2]
gi|421518351|ref|ZP_15965025.1| hypothetical protein A161_18770 [Pseudomonas aeruginosa PAO579]
gi|424939327|ref|ZP_18355090.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
NCMG1179]
gi|451985678|ref|ZP_21933891.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
aeruginosa 18A]
gi|3287987|sp|Q51385.2|RLMN_PSEAE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122260978|sp|Q02RW0.1|RLMN_PSEAB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9949979|gb|AAG07193.1|AE004798_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|1162959|gb|AAB40948.1| homologous to HI0365 in Haemophilus influenzae; ORF1 [Pseudomonas
aeruginosa PAO1]
gi|115587052|gb|ABJ13067.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
UCBPP-PA14]
gi|310881694|gb|EFQ40288.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa 39016]
gi|334837516|gb|EGM16274.1| hypothetical protein PA15_21843 [Pseudomonas aeruginosa 152504]
gi|334841217|gb|EGM19852.1| hypothetical protein PA13_11338 [Pseudomonas aeruginosa 138244]
gi|346055773|dbj|GAA15656.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa
NCMG1179]
gi|347303505|gb|AEO73619.1| putative Fe-S-cluster redox enzyme [Pseudomonas aeruginosa M18]
gi|348036456|dbj|BAK91816.1| hypothetical protein NCGM2_4993 [Pseudomonas aeruginosa NCGM2.S1]
gi|354831765|gb|EHF15772.1| cfr family radical SAM enzyme [Pseudomonas sp. 2_1_26]
gi|375043629|gb|EHS36245.1| hypothetical protein O1O_14788 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051368|gb|EHS43837.1| hypothetical protein O1Q_04533 [Pseudomonas aeruginosa MPAO1/P2]
gi|384396851|gb|EIE43269.1| hypothetical protein CF510_29295 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317972|gb|AFM63352.1| hypothetical protein PADK2_05295 [Pseudomonas aeruginosa DK2]
gi|404347833|gb|EJZ74182.1| hypothetical protein A161_18770 [Pseudomonas aeruginosa PAO579]
gi|404525142|gb|EKA35418.1| hypothetical protein PABE171_1306 [Pseudomonas aeruginosa ATCC
14886]
gi|404536613|gb|EKA46249.1| hypothetical protein PACI27_1181 [Pseudomonas aeruginosa CI27]
gi|404539446|gb|EKA48927.1| hypothetical protein PABE177_1048 [Pseudomonas aeruginosa ATCC
700888]
gi|404547542|gb|EKA56536.1| hypothetical protein PAE2_1070 [Pseudomonas aeruginosa E2]
gi|451756727|emb|CCQ86414.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
aeruginosa 18A]
gi|453043514|gb|EME91244.1| hypothetical protein H123_25326 [Pseudomonas aeruginosa PA21_ST175]
Length = 379
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK S I+
Sbjct: 10 NLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKASAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 70 GPEIVSQDISADGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 130 GFNSDLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMIDKL + V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 185 NIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPINKKY 244
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L +ND HA ++I+L++ T CKINLI
Sbjct: 245 PLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKD----TPCKINLI 300
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F +L G VT+R RG+DI+AACGQL G+++
Sbjct: 301 PFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQLVGQVM 354
>gi|359430013|ref|ZP_09221029.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
NBRC 100985]
gi|358234567|dbj|GAB02568.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
NBRC 100985]
Length = 411
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 250/362 (69%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH+F V+DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRAELEKFFEDLGEKKFRAGQVMKWIHQFFVTDFAEMTNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRNYSKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGARKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPV---AERERTVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V +STSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQLMLDDFAYGMSKRRVTISTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RY+ S R +T EY ML G+ND HA +L+ L+
Sbjct: 269 PINKKYPLEQLIAACQRYLAKDGNESARRHVTIEYIMLDGVNDQPEHAQQLLKLL----K 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 325 NLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|398978326|ref|ZP_10687701.1| 23S rRNA methyltransferase [Pseudomonas sp. GM25]
gi|398137126|gb|EJM26192.1| 23S rRNA methyltransferase [Pseudomonas sp. GM25]
Length = 382
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 240/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATIDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSELGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398864931|ref|ZP_10620459.1| 23S rRNA methyltransferase [Pseudomonas sp. GM78]
gi|398244323|gb|EJN29880.1| 23S rRNA methyltransferase [Pseudomonas sp. GM78]
Length = 380
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 241/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Xenopus (Silurana) tropicalis]
Length = 328
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 230/314 (73%), Gaps = 11/314 (3%)
Query: 44 MTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLC 102
M+DL+ SLR+KL++ I ++++Q S DGT KW+F V N +ETVFIPE +R TLC
Sbjct: 1 MSDLAKSLREKLQDRACITGLPVLTEQASADGTVKWLFDVGGGNAVETVFIPEDDRGTLC 60
Query: 103 ISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNI 162
+S+Q GCA+ C FCSTG QGF RNL+ GEI+ QLW E LR+ ++ S +R I+N+
Sbjct: 61 VSSQAGCAVGCRFCSTGHQGFSRNLSTGEILAQLWYAEHHLRQ----RLGSS-ERVISNV 115
Query: 163 VMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVS 222
VMMGMGEPL NY + + AL+++L DH YGLSRR V +STSG++PM+++LA +CPV LAVS
Sbjct: 116 VMMGMGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLALDCPVALAVS 175
Query: 223 LHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIEL 282
LHA N+ LR+ LV +++KYPL+EL+ C RY+ ++PR ITFEYCML G+ND HA +L
Sbjct: 176 LHAPNDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGVNDQPEHAQQL 235
Query: 283 ISLMR---KNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRG 339
I L+R + K+ CK NLIPFN FP S L+ S R+ FA++L ++GI T+RK RG
Sbjct: 236 IQLVRGHAQGKVW--CKFNLIPFNPFPESGLVRSPPQRVSGFARLLSDAGIVTTVRKTRG 293
Query: 340 NDINAACGQLSGKI 353
+DI+AACGQL+G++
Sbjct: 294 DDIDAACGQLAGEV 307
>gi|344942369|ref|ZP_08781657.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
gi|344263561|gb|EGW23832.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
Length = 370
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 233/352 (66%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + ELGE PFRA QL KWI++ GV DF+ MT+LS SLR L + YI
Sbjct: 14 NLLDFDRKGLAAFFVELGEKPFRATQLLKWIYQEGVEDFDLMTNLSKSLRAYLTENCYIA 73
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ ++++ DGT KW+ N IETVFIPE+ R TLC+S+Q+GCA+ C FCST +Q
Sbjct: 74 TPEIVLEKVATDGTCKWVMQTGCGNRIETVFIPEEGRGTLCVSSQIGCALACTFCSTAQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQL+V + +L G R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 134 GFNRNLTTAEIIGQLFVAQKRL---------GPGNR-ITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D +GLS+R V +STSG++P + +L Q C V LAVSLHA + LR++LVPI+KKY
Sbjct: 184 NLMMDDFTFGLSKRRVTISTSGVVPAMYRLTQVCDVSLAVSLHAVTDELRDELVPINKKY 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC +PR +TFEY ML GIND+ A L+ L++ KINLIP
Sbjct: 244 PLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGLVKLLKT----VPSKINLIP 299
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS CS I F +L ++GI T+RK RG DI+AACGQL G++
Sbjct: 300 FNPFPNSAYRCSSKEAINCFKTLLNDAGIVTTVRKTRGEDIDAACGQLVGQV 351
>gi|350561447|ref|ZP_08930285.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780479|gb|EGZ34797.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 377
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 236/353 (66%), Gaps = 12/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + + + GE FRA QL KWIH+ GV+DF MTDLS +LR++L ++
Sbjct: 10 NLLGMPRQRLAGQFENWGERGFRATQLVKWIHQRGVTDFAAMTDLSKALRERLGLLATLE 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I ++ S DGT KW+ + N IETV+IPE +R TLCIS+QVGCA++C FCST +Q
Sbjct: 70 LPEIALERRSDDGTVKWVLRLADGNAIETVYIPEDDRGTLCISSQVGCALDCTFCSTAQQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQLW+ +L I R +TN+V MGMGEPL N ++ + A+
Sbjct: 130 GFNRNLSAQEIIGQLWLANRRL------PIPEGRSRAVTNVVFMGMGEPLANVEAVVDAV 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D+AYGLS+R V +STSG++P +D+L V LAVSLHA N+ LR++LVPI++KY
Sbjct: 184 DLMLDDNAYGLSKRRVTVSTSGLVPALDRLGASTDVALAVSLHAPNDALRDRLVPINRKY 243
Query: 242 PLKELILACHRYITYSPR-HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++EL+ AC RY R H +TFEY +L GIND HA ELI+L+R CKINLI
Sbjct: 244 PIRELLDACRRYTRDGARHHRVTFEYVLLAGINDQPQHARELITLLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S + + +++F K+L ++G +R+ RG+DI+AACGQL G++
Sbjct: 300 PFNPFPGSPFVRPSANAVQVFEKLLDDAGFVTIVRRTRGDDIDAACGQLVGQV 352
>gi|424924744|ref|ZP_18348105.1| radical SAM enzyme [Pseudomonas fluorescens R124]
gi|404305904|gb|EJZ59866.1| radical SAM enzyme [Pseudomonas fluorescens R124]
Length = 382
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATIDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKD----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|419954091|ref|ZP_14470232.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri TS44]
gi|387969180|gb|EIK53464.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri TS44]
Length = 382
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 244/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M+++ +LR+KLK I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNIGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQAGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----TVPAKVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL+ L+ +C RYI+ + ++T EY +L G+ND HA ++I+L+ K CKINLI
Sbjct: 244 PLQMLLESCQRYISRLGEKRVLTIEYTLLQGVNDQPEHAEQMIALLAK----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL +G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKAGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|426407849|ref|YP_007027948.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
UW4]
gi|426266066|gb|AFY18143.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
UW4]
Length = 382
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 241/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398853514|ref|ZP_10610113.1| 23S rRNA methyltransferase [Pseudomonas sp. GM80]
gi|398239349|gb|EJN25060.1| 23S rRNA methyltransferase [Pseudomonas sp. GM80]
Length = 382
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKVIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E++ L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMVELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|406038656|ref|ZP_11046011.1| hypothetical protein AursD1_02268 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 408
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 245/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH++ V+DF +MT++S LR KL+ I
Sbjct: 29 NLLGMSRAELEGFFEQLGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQVCEIT 88
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 89 APEVVHRHYSKDGTRKWVFRVGDGAGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 148
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+L EIIGQLWV + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 149 CSTGKQGFQRDLNPDEIIGQLWVANQSYMEDVPV---AERERSVTNVVMMGMGEPLLNYD 205
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 206 AVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 265
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RY+ S R +T EY ML G+ND HA ++I L++
Sbjct: 266 PINKKYPLEQLIAACQRYLAKGGNESTRKHVTIEYVMLDGVNDHPEHAQQMIKLLKN--- 322
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 323 -LPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 381
Query: 352 KI 353
+
Sbjct: 382 HV 383
>gi|409394995|ref|ZP_11246121.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
gi|409395960|ref|ZP_11246985.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
gi|409119459|gb|EKM95842.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
gi|409120364|gb|EKM96713.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas sp.
Chol1]
Length = 382
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 244/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M+++ +LR+KLK I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKCFRAGQVMKWIHHFGVDDFDAMSNIGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQAGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----TVPAKVDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL+ L+ +C RYI+ + ++T EY +L G+ND HA ++I+L+ K CKINLI
Sbjct: 244 PLQMLLESCQRYISRLGEKRVLTIEYTLLQGVNDQPEHAEQMIALLAK----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL +G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKAGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|423097174|ref|ZP_17084970.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens Q2-87]
gi|397884551|gb|EJL01034.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens Q2-87]
Length = 382
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVIAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398997503|ref|ZP_10700326.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM21]
gi|398123901|gb|EJM13429.1| 23S rRNA, methyltransferase [Pseudomonas sp. GM21]
Length = 380
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|406943843|gb|EKD75743.1| hypothetical protein ACD_44C00034G0002 [uncultured bacterium]
Length = 349
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 183/352 (51%), Positives = 235/352 (66%), Gaps = 14/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + E GE +R QL +WIH+ GV DF+ M++LS LR+KLK I
Sbjct: 5 NLLNFNRENLAACLVEWGEPAYRGTQLLQWIHQKGVFDFDAMSNLSKPLREKLKEKSEIN 64
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
I DQ+S DGTRKW+F + + N IETVFIPE +R TLC+S+QVGCA+NC FCSTG+Q
Sbjct: 65 FLDIALDQLSHDGTRKWLFRLSEGNCIETVFIPEDSRGTLCVSSQVGCAVNCTFCSTGKQ 124
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LTV EIIGQ+ + L +K + ITN+VMMGMGEPLLN+ + + L
Sbjct: 125 GFSRDLTVAEIIGQVLLASRLLLPQK---------KAITNVVMMGMGEPLLNFNNVVQTL 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D+AYGLS+R V +STSGIIP + +L + PV LAVSLHA N+ LRN LVP+++KY
Sbjct: 176 DILLDDYAYGLSKRRVTVSTSGIIPKMIELKKRSPVALAVSLHAPNDELRNVLVPVNRKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ C Y PR + EY ML IND+D+HA +LI L+ KNK + K+NLIP
Sbjct: 236 PLSELMSVCSDYFKEEPRRAVMMEYVMLDDINDSDLHAKQLIQLL-KNK---AVKVNLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + CS +IK F K LM+S I TIR+ RG DI ACGQL GK+
Sbjct: 292 FNPFPKTTYHCSPMEKIKKFQKKLMDSDIMTTIRRTRGEDIEGACGQLVGKV 343
>gi|398858743|ref|ZP_10614430.1| 23S rRNA methyltransferase [Pseudomonas sp. GM79]
gi|398238470|gb|EJN24197.1| 23S rRNA methyltransferase [Pseudomonas sp. GM79]
Length = 382
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398841605|ref|ZP_10598816.1| 23S rRNA methyltransferase [Pseudomonas sp. GM102]
gi|398907354|ref|ZP_10653803.1| 23S rRNA methyltransferase [Pseudomonas sp. GM50]
gi|398107918|gb|EJL97908.1| 23S rRNA methyltransferase [Pseudomonas sp. GM102]
gi|398171720|gb|EJM59617.1| 23S rRNA methyltransferase [Pseudomonas sp. GM50]
Length = 382
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|395649896|ref|ZP_10437746.1| hypothetical protein Pext1s1_15012 [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 382
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKH----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|398879597|ref|ZP_10634689.1| 23S rRNA methyltransferase [Pseudomonas sp. GM67]
gi|398882210|ref|ZP_10637180.1| 23S rRNA methyltransferase [Pseudomonas sp. GM60]
gi|398196305|gb|EJM83318.1| 23S rRNA methyltransferase [Pseudomonas sp. GM67]
gi|398199459|gb|EJM86401.1| 23S rRNA methyltransferase [Pseudomonas sp. GM60]
Length = 380
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH GV DF+ MT++S +LR KLK +
Sbjct: 8 TNLLGLTQQEMEKFFDSIGEKRFRAGQVMKWIHHLGVDDFDAMTNVSKALRDKLKAIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATADRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+L++ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELSKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L IND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDINDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|77460825|ref|YP_350332.1| hypothetical protein Pfl01_4604 [Pseudomonas fluorescens Pf0-1]
gi|123772061|sp|Q3K7B3.1|RLMN_PSEPF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77384828|gb|ABA76341.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 382
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++S +LR+KLK ++
Sbjct: 9 NLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVSKALREKLKAVAEVR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SVPATIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 242 PLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C RY++ + ++T EY +L +ND HA+E+I L++ CKINLI
Sbjct: 244 PLKMLLESCQRYMSALGEKRVLTIEYTLLKDVNDKLEHAVEMIELLKD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDQLHQAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|388456385|ref|ZP_10138680.1| Fe-S containing enzyme [Fluoribacter dumoffii Tex-KL]
Length = 375
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 236/353 (66%), Gaps = 10/353 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + + GE P+RA+Q+ +WIH+ G+SDF +MT+LS LR+KL +IK
Sbjct: 7 NLLDYNYQQMRELLDSWGEKPYRAQQIIQWIHQTGLSDFTEMTNLSKQLREKLAQRAHIK 66
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++ Q S DGT KW+ + N IETVFIPE R TLC+S+QVGCA+NC FCST +Q
Sbjct: 67 LPEIIACQKSSDGTHKWLLKLDCGNCIETVFIPEATRGTLCVSSQVGCALNCSFCSTAKQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+W+ +L E+ + +++TN+VMMGMGEPLLN+ + + A+
Sbjct: 127 GFNRNLSTAEIIGQVWLAVRELSLEEGVH-----DKRVTNVVMMGMGEPLLNFDNVVSAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D AYGLS+R V LSTSG++P + +L + PV LAVSLHA N+ LRN+LVPI+KKY
Sbjct: 182 SIMMDDFAYGLSKRRVTLSTSGVLPELQRLREVSPVALAVSLHAPNDELRNELVPINKKY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +L+ C Y PR +TFEY ML G+ND HA +LI L+R K+NLIP
Sbjct: 242 PLSQLMALCKTYFKNEPRRKVTFEYVMLKGVNDQPEHANQLIKLLRN----IPAKVNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN FP ++ S I F L+ GI RK RG+DI+AACGQL+G+++
Sbjct: 298 FNPFPMTHYERSSQEAIDAFRDKLIAHGINTITRKTRGDDIDAACGQLAGEVM 350
>gi|389783332|ref|ZP_10194765.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter
spathiphylli B39]
gi|388434846|gb|EIL91775.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter
spathiphylli B39]
Length = 374
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 238/352 (67%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD ++ ++GE P+RA+Q+ KWI+ +F MTD+ +LR KL YI
Sbjct: 10 NLLDFDRQGLRDFFVQIGEKPYRAEQVMKWIYHDLEDNFENMTDVGKALRAKLTEVCYIG 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + D+++ DGT KW+ + N IETV+IPE R TLC+S+Q+GCA+NC FCSTG Q
Sbjct: 70 APKTLLDKVATDGTHKWLLGMDSGNAIETVYIPEPTRGTLCVSSQIGCALNCQFCSTGAQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+WV K + + R+ITN+VMMGMGEPL N+++ + A+
Sbjct: 130 GFNRNLSTAEIIGQVWVAA------KYLGNVTHQNRRITNVVMMGMGEPLANFENVLKAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+ D +GL+ + V LST+G++P+ID+L+ V LAVSLHA+N++LR +L+PI+K+Y
Sbjct: 184 KLMRDDLGFGLAAKRVTLSTAGMVPLIDQLSDAIDVSLAVSLHAANDDLRTELMPINKRY 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC R++ PR ITFEY ++ GIND H +LI LMRK L +CK+NLIP
Sbjct: 244 PLAELLAACQRWVARKPRTSITFEYTLMKGINDQPEHVRQLIKLMRK---LPTCKVNLIP 300
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S + I F L+N+G+ +R+ RG+DI+AACGQL+G++
Sbjct: 301 FNPFPGTQFKRSDANDIHQFQTQLLNAGVLTMLRRTRGDDIDAACGQLAGQV 352
>gi|420137994|ref|ZP_14645937.1| hypothetical protein PACIG1_1435 [Pseudomonas aeruginosa CIG1]
gi|421158384|ref|ZP_15617643.1| hypothetical protein PABE173_1260 [Pseudomonas aeruginosa ATCC
25324]
gi|403249259|gb|EJY62772.1| hypothetical protein PACIG1_1435 [Pseudomonas aeruginosa CIG1]
gi|404549671|gb|EKA58518.1| hypothetical protein PABE173_1260 [Pseudomonas aeruginosa ATCC
25324]
Length = 379
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK S I+
Sbjct: 10 NLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKASAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 70 GPEIVSQDISADGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 130 GFNSDLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVVAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMIDKL + V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 185 NIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPINKKY 244
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L +ND HA ++I+L++ T CKINLI
Sbjct: 245 PLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKD----TPCKINLI 300
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F +L G VT+R RG+DI+AACGQL G+++
Sbjct: 301 PFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQLVGQVM 354
>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
gi|123741643|sp|Q31I07.1|RLMN_THICR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/354 (49%), Positives = 242/354 (68%), Gaps = 14/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL + + + +GE PFRA Q+ KWIH+FGVSDF +MT++S SLR+KL + I+
Sbjct: 10 DLLGMDRAELTEFFASIGEKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLSKTALIR 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+Q S DGT KW+ V N +E VFIPEK+R TLCIS+QVGCA+ C FCSTG+Q
Sbjct: 70 TPKIVSEQRSADGTIKWLLEVDNHNCVEAVFIPEKSRGTLCISSQVGCALECSFCSTGQQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EI+ Q+WV K + + +R I+N+V MGMGEPLLN K T
Sbjct: 130 GFNRNLENWEIVAQMWVAN------KALGCKPKEERIISNVVFMGMGEPLLNVKHTFPTA 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D+AYGLS+R V +ST+G++P IDK+ + V LA+SLHA NN LR++LVPI+KKY
Sbjct: 184 RILMDDNAYGLSKRRVTISTAGVVPAIDKIKESLDVSLAISLHAPNNALRDELVPINKKY 243
Query: 242 PLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+ L+ A HRY+ +S +H +T EY ML +ND HA +LI L+ CK+NL
Sbjct: 244 PLEVLMPALHRYVEGGHSKKH-VTVEYVMLDHVNDRLEHAQQLIELLGD----LPCKVNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FPN++ S N+ + F LM +G+ T+R+ RG+DI+AACGQL+GK+
Sbjct: 299 IPFNPFPNTDYKRSSNNAVHRFKDALMEAGVNCTVRRTRGDDIDAACGQLAGKV 352
>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|407007098|gb|EKE22852.1| hypothetical protein ACD_6C00703G0004 [uncultured bacterium]
Length = 411
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 176/362 (48%), Positives = 250/362 (69%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH+F V+DF +MT++S LR+KL+ IK
Sbjct: 32 NLLGMSRPQMEKFFEDMGEKKFRAGQVMKWIHQFFVTDFAEMTNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRN----TLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++R+ TLCIS+QVGCA++C F
Sbjct: 92 APEVVHKNYSKDGTRKWVFRVGDGEGSLVETVLIPAEHRSGLRRTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + + + + +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTQAEIIGQLWMANYSYMEDVPV---LERERSVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++++L D AYG+S+R V LSTSG++P ID++ ++ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RYI S R +T EY ML G+ND HA ++I L++
Sbjct: 269 PINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDHPEHAQQMIKLLKN--- 325
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 326 -LPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|406037307|ref|ZP_11044671.1| putative Fe-S-cluster redox enzyme [Acinetobacter parvus DSM 16617
= CIP 108168]
Length = 411
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH++ V+DF +M+++S LR+KL+ IK
Sbjct: 32 NLLGMSRPELEKFFEDLGEKKFRAGQVMKWIHQYFVTDFAEMSNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRNYSKDGTRKWVFRVGDGEGSLVETVLIPAEDKTGARKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPV---AERERTVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RY+ S R +T EY ML G+ND HA + K
Sbjct: 269 PINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLDGVNDQPEHA----QQLLKLLK 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 325 NLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|431926418|ref|YP_007239452.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
gi|431824705|gb|AGA85822.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas stutzeri RCH2]
Length = 382
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 175/354 (49%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQSQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ I ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA NN LR++LVPI+KKY
Sbjct: 184 HIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNNALRDQLVPINKKY 243
Query: 242 PLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L GIND HA ++I+L+ CKINLI
Sbjct: 244 PLDMLLSACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMITLLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|330807644|ref|YP_004352106.1| hypothetical protein PSEBR_a933 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948956|ref|YP_005206444.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens F113]
gi|423695452|ref|ZP_17669942.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens
Q8r1-96]
gi|327375752|gb|AEA67102.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758970|gb|AEV61049.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
fluorescens F113]
gi|388009256|gb|EIK70507.1| 23S rRNA m2A2503 methyltransferase [Pseudomonas fluorescens
Q8r1-96]
Length = 382
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATVDRAITNVVMMGMGEPLLNFDNVVSA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKK 242
Query: 241 YPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY+ + + ++T EY +L +ND HA+E+I L++ CKINL
Sbjct: 243 YPLKMLLESCQRYMSSLGEKRVLTIEYTLLKDVNDKVEHAVEMIELLKN----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G++L
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|418294917|ref|ZP_12906794.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379066277|gb|EHY79020.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 382
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 174/354 (49%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQSQLESFFESVGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ I ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 HIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDELRDQLVPINKKY 243
Query: 242 PLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L GIND HA ++I+L+ CKINLI
Sbjct: 244 PLDMLLAACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMITLLAN----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILRKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 235/353 (66%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L + LGE PFRA+Q+ +WI++ V+DF+ MTDL+ SLRK+L S I
Sbjct: 6 TNLLNLDRAGLEAFFTCLGEKPFRARQVLRWIYQRFVTDFSAMTDLNKSLRKRLAESAVI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P I+ S DGTRKW+ + N IETVFIPE++R TLCIS+QVGC ++C FC+TG+
Sbjct: 66 SLPEIVQQHRSADGTRKWLLRIHGNNCIETVFIPEEDRGTLCISSQVGCILDCSFCATGK 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL + EIIGQLW+ L R +G+R ITN+VMMGMGEPL N+ + + A
Sbjct: 126 QGFNRNLAISEIIGQLWLANKILGR------TPKGERIITNVVMMGMGEPLANFNNVVAA 179
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D +YGLS R V LST+G++P ID+L CPV LAVSLHA + LR++LVP++KK
Sbjct: 180 MNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCPVSLAVSLHAPTDKLRDELVPLNKK 239
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL++L+ AC RY+ R +TFEY ML +ND+ HA L+ L++ K+NLI
Sbjct: 240 YPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSHARALLRLLQG----LPAKVNLI 295
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S S I F + L+ GI RK RG+DI AACGQL+G++
Sbjct: 296 PFNPFPGSVYRRSDAETIDRFREKLLRGGIMTVTRKTRGDDIAAACGQLAGQV 348
>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
Length = 372
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 234/352 (66%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L + + LGE PFRA+Q+ +W+H+ V+DF+ MTDLS SLR +L + I
Sbjct: 8 NLLNLDRVGLEAFFARLGEKPFRARQMLRWLHQQFVTDFSAMTDLSKSLRARLAETAVIA 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ S DGT KW+ V N IETVFIPE++R TLC+S+QVGC ++C FC+TG+Q
Sbjct: 68 LPEVVHQHHSTDGTYKWLLRVSGGNCIETVFIPEEDRGTLCVSSQVGCILDCSFCATGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQLW+ L R+ +G+R ITN+VMMGMGEPL N+ + + A+
Sbjct: 128 GFNRNLGVSEIIGQLWLANKALGRDP------KGERIITNVVMMGMGEPLANFNNVVAAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D +YGLS R V LST+G++P +D+L CPV LAVSLHA + LR++LVP++K+Y
Sbjct: 182 NLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICPVSLAVSLHAPTDELRDELVPLNKRY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ EL+ AC RY+ R +TFEY ML G+ND+ HA L+ L++ K+NLIP
Sbjct: 242 PIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHARALLRLLQG----LPAKVNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S S I F + L+ G+ RK RG+DI AACGQL+G++
Sbjct: 298 FNPFPGSLYRRSDTETIDRFREELLRGGLMTVTRKTRGDDIAAACGQLAGRV 349
>gi|260549076|ref|ZP_05823297.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
RUH2624]
gi|424056999|ref|ZP_17794516.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
nosocomialis Ab22222]
gi|425741725|ref|ZP_18859864.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-487]
gi|445437393|ref|ZP_21441039.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC021]
gi|260407804|gb|EEX01276.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter sp.
RUH2624]
gi|407440532|gb|EKF47049.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
nosocomialis Ab22222]
gi|425491436|gb|EKU57720.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-487]
gi|444753975|gb|ELW78611.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC021]
Length = 410
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 244/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAQLEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA + K
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHA----QQLLKLLK 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|402756875|ref|ZP_10859131.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. NCTC 7422]
Length = 411
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 248/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + ++LGE FRA Q+ KWIH++ V+DF M+++S LR+KL+ IK
Sbjct: 32 NLLGMSRTELEKFFEDLGEKKFRASQVMKWIHQYFVTDFAVMSNISGKLREKLEKICEIK 91
Query: 63 APHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 92 APEVVHRNYSKDGTRKWVFRVGDGEGSLVETVLIPADDKTGARKTLCISSQVGCALDCSF 151
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + + + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 152 CSTGKQGFQRDLTPAEIIGQLWMANYSYMEDVPV---AERERTVTNVVMMGMGEPLLNYD 208
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + +++L+L D AYG+S+R V LSTSG++P ID+LAQ+ V LA+SLHA N+ LRN+LV
Sbjct: 209 AVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDIDVALAISLHAPNDELRNELV 268
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL++LI AC RY+ S R +T EY ML G+ND HA +L+ L+
Sbjct: 269 PINKKYPLQQLIAACQRYLAKDGNESARRHVTIEYVMLEGVNDQPEHAQQLLKLL----K 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 325 NLPSKINLIPFNPFPHAPYGRSSRNRIIAFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 384
Query: 352 KI 353
++
Sbjct: 385 QV 386
>gi|254236710|ref|ZP_04930033.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126168641|gb|EAZ54152.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 379
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK S I+
Sbjct: 10 NLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKASAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 70 GPEIVSQDISADGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT E+IGQ+W+ + ++ R ITN+VMMGM EPLLN+ + + A+
Sbjct: 130 GFNSDLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMSEPLLNFDNVVAAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMIDKL + V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 185 NIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNKLVPINKKY 244
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L +ND HA ++I+L++ T CKINLI
Sbjct: 245 PLGMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKD----TPCKINLI 300
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F +L G VT+R RG+DI+AACGQL G+++
Sbjct: 301 PFNPFPHSGYERPSNNAIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQLVGQVM 354
>gi|430760187|ref|YP_007216044.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009811|gb|AGA32563.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 377
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 235/353 (66%), Gaps = 12/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + + + GE FRA QL KWIH+ GV+DF MTDLS +LR++L ++
Sbjct: 10 NLLGMPRQRLAGQFESWGERGFRATQLVKWIHQRGVTDFAAMTDLSKTLREQLGLLAAVE 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I ++ S DGT KW+ + N IETV+IPE +R TLCIS+QVGCA++C FCST +Q
Sbjct: 70 LPEIALERRSDDGTVKWVLRLADGNAIETVYIPEDDRGTLCISSQVGCALDCTFCSTAQQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQLW+ + + + R +TN+V MGMGEPL N + + A+
Sbjct: 130 GFNRNLSAHEIIGQLWLAN------QRVPVPEGRSRAVTNVVFMGMGEPLANLDAVVDAI 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D+AYGLS+R V +STSG++P +D+L V LAVSLHA N+ LRN+LVPI++KY
Sbjct: 184 DLMLDDNAYGLSKRRVTVSTSGLVPALDRLGAATDVALAVSLHAPNDALRNRLVPINRKY 243
Query: 242 PLKELILACHRYITYSPR-HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+ EL+ AC RY R H +TFEY +L GIND HA EL++L+R CKINLI
Sbjct: 244 PIHELLNACRRYTRDGARHHRVTFEYVLLAGINDQPRHARELMALLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S + ++ +++F K+L ++G +R+ RG+DI+AACGQL G++
Sbjct: 300 PFNPFPGSPFVRPSSNAVRVFEKLLDDAGFVTIVRRTRGDDIDAACGQLVGEV 352
>gi|333901478|ref|YP_004475351.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas fulva
12-X]
gi|333116743|gb|AEF23257.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas fulva
12-X]
Length = 382
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 242/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + LGE FRA Q+ KWIH FGV DF MT++ +LR+KL+ + YI+
Sbjct: 9 NLLGLTQPEMEQFFESLGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLEAAAYIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT EIIGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSDLTSAEIIGQVWIANKSFG-----SVPAKIDRAITNVVMMGMGEPLLNFDNVVSAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMIDKLA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRSQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L +ND HA ++++L+ CKINLI
Sbjct: 244 PLDMLLAACKRYISRLGEKRVLTVEYTLLKDVNDKLEHAEQMVALLAD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F ++L +G VT+R RG DI+AACGQL G+++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQELLQKAGHNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|374262913|ref|ZP_09621473.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|363536729|gb|EHL30163.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 236/352 (67%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + + GE P+RA+Q+ +WIH+ G+ DF +MT+L +LR+KL YIK
Sbjct: 7 NLLNYNYQQMRELLSSWGEQPYRAQQIIQWIHQSGLVDFAQMTNLGKALREKLSQLSYIK 66
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++ Q S DGT KW+ + N IETVFIPE NR TLC+S+QVGCA+NC FCST +Q
Sbjct: 67 VPEIVTCQKSSDGTHKWLLKLDCGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+W+ +L + + +++TN+VMMGMGEPLLN+ + + A+
Sbjct: 127 GFNRNLSTAEIIGQVWLAVRELSTNQGVH-----DKRLTNVVMMGMGEPLLNFDNVVSAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D AYGLS+R V LSTSG++P +++L Q PV LAVSLHA N+ LRN+LVPI+KKY
Sbjct: 182 NIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSPVALAVSLHAPNDELRNELVPINKKY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +L+ C Y PR +TFEY ML G+ND HA +LI L+R K+NLIP
Sbjct: 242 PLAQLMALCKIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKLLRD----VPAKVNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S + I F L+ +GI RK RG+DI+AACGQL+G++
Sbjct: 298 FNPFPMTQYQRSSQAAIDAFRDKLIANGINTITRKTRGDDIDAACGQLAGEV 349
>gi|319896694|ref|YP_004134887.1| fe-s-cluster redox enzyme [Haemophilus influenzae F3031]
gi|317432196|emb|CBY80548.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3031]
Length = 383
Score = 356 bits (914), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|421625647|ref|ZP_16066493.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC098]
gi|408697741|gb|EKL43247.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC098]
Length = 410
Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 179/362 (49%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + K++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAELEKFFKDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA +L+ L+
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQLLKLL----K 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|88799903|ref|ZP_01115475.1| radical SAM enzyme, Cfr family protein [Reinekea blandensis MED297]
gi|88777334|gb|EAR08537.1| radical SAM enzyme, Cfr family protein [Reinekea sp. MED297]
Length = 386
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/341 (50%), Positives = 236/341 (69%), Gaps = 11/341 (3%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
+ +ELGE FRA Q+ KWIH+ GV DF+ MTD+S SLR+KLK I AP + + S D
Sbjct: 22 FTEELGEKRFRATQVLKWIHQRGVDDFDDMTDVSKSLREKLKAVAVIDAPEVTFKKFSKD 81
Query: 75 GTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
GTRKW+ + + +ETV+IPE +R TLC+S+Q+GCA++C FCSTG+QGF R+L+ EII
Sbjct: 82 GTRKWVMKMPGGSAVETVYIPEDDRGTLCVSSQIGCALDCSFCSTGKQGFNRDLSAAEII 141
Query: 134 GQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLS 193
GQLWV + + +R +TN+VMMGMGEPLLNY + + A+ L++ D+AYGLS
Sbjct: 142 GQLWVAARSWD-----EPGKKRERHVTNVVMMGMGEPLLNYDNVVEAMNLMMEDNAYGLS 196
Query: 194 RRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253
+R V LSTSG++P I LA+E V +A+SLHA N+ LRN+LVP++K+Y LK+ + A + Y
Sbjct: 197 KRRVTLSTSGVVPRILDLAEETDVSMALSLHAPNDALRNELVPLNKRYGLKQTLDAVNTY 256
Query: 254 ITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
P + + T EY +++ +ND HA EL+ L+R+ T CKINLIPFN FPNS
Sbjct: 257 FARLPDKRVPTIEYTLINEVNDKPEHAHELVDLLRE----TPCKINLIPFNPFPNSGYER 312
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
N+RI F IL +G VT+RK RG+DI+AACGQL G++
Sbjct: 313 PSNNRIHRFKDILHQAGYNVTVRKTRGDDIDAACGQLVGQV 353
>gi|94501127|ref|ZP_01307650.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
gi|94426703|gb|EAT11688.1| hypothetical protein RED65_06057 [Oceanobacter sp. RED65]
Length = 378
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LSP K ++ ELGE PFRA+Q+ KWIH+ G+ +F+ MT++S +R+KLK+ ++
Sbjct: 9 NLLGLSPKKMKDFFVELGEKPFRAQQILKWIHQVGIDNFDDMTNVSKVMREKLKDVATVQ 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ IS DGT+KW+ + + +ETV+IPE +R TLC+S+Q+GC+++C FCSTG+Q
Sbjct: 69 YPEVVFHDISKDGTKKWVMRMPGGSSVETVYIPEGDRGTLCVSSQIGCSLDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+L+V EIIGQ++V K + +R+ITN+VMMGMGEPL+N+ + + A+
Sbjct: 129 GFNRDLSVAEIIGQVYVAAKSFD-----KPGEKRERKITNVVMMGMGEPLMNFDNVVDAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D YGLS+R V LSTSG++P + LA V LAVSLHA N+ LRN+LVPI+KKY
Sbjct: 184 DLMMDDFCYGLSKRRVTLSTSGVVPKLYDLADVSDVSLAVSLHAPNDELRNELVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+K+L+ AC+ Y+ + S R +T EY +++ +ND HA +L L++ T CKINLI
Sbjct: 244 PIKDLMAACNHYMGSLSDRRKLTVEYTLINKVNDELEHAQQLAKLLKD----TPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS N+R+ F L + G VTIR RG+DI+AACGQL GK+
Sbjct: 300 PFNPFPNSGYERPSNNRVYKFRDYLHSQGFIVTIRTTRGDDIDAACGQLVGKV 352
>gi|388543571|ref|ZP_10146861.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas sp. M47T1]
gi|388278128|gb|EIK97700.1| 2-vinyl bacteriochlorophyllide hydratase [Pseudomonas sp. M47T1]
Length = 379
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 238/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I
Sbjct: 5 TNLLGLTQPEMEQFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKACAEI 64
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 65 RGPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 124
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + I A
Sbjct: 125 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATIDRAITNVVMMGMGEPLLNFDNVIAA 179
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D YG+S+R V LSTSG++PMID LA V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 180 MRLMMDDLGYGISKRRVTLSTSGVVPMIDVLADHIDVSLALSLHAPNDALRNQLVPINKK 239
Query: 241 YPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ +C RY++ + ++T EY +L +ND HA+E++ L++ CK+NL
Sbjct: 240 YPLKMLLESCQRYMSQLGEKRVLTIEYTLLKDVNDKLEHAVEMVELLKN----VPCKVNL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L +G VT+R RG DI+AACGQL G+++
Sbjct: 296 IPFNPFPHSGYERPSNNAIRRFQDHLHQAGFNVTVRTTRGEDIDAACGQLVGQVM 350
>gi|386021784|ref|YP_005939808.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 4166]
gi|327481756|gb|AEA85066.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 4166]
Length = 382
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RY++ + ++T EY +L G+ND HA ++I+L+ CKINLI
Sbjct: 244 PLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|319775768|ref|YP_004138256.1| Fe-S-cluster redox protein [Haemophilus influenzae F3047]
gi|317450359|emb|CBY86575.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae F3047]
Length = 383
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|399519572|ref|ZP_10760367.1| radical SAM protein [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112668|emb|CCH36925.1| radical SAM protein [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 382
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF MT++ +LR+KL+ S I+
Sbjct: 9 NLLGLTQPEMEQFFESIGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLEASAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSENISADGTRKWVVRVASGSCVETVYIPQNGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT EIIGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSDLTSAEIIGQVWIANKSFG-----TVPAKVDRAITNVVMMGMGEPLLNFDNVVSAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMIDKLA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RY++ + ++T EY +L G+ND HA ++++L+ CKINLI
Sbjct: 244 PLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQPEHAEQMVALLAD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP S N+ I+ F +L +G VT+R RG+DI+AACGQL G+++
Sbjct: 300 PFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDAACGQLVGQVM 353
>gi|329123609|ref|ZP_08252169.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
gi|327469808|gb|EGF15273.1| cfr family radical SAM enzyme [Haemophilus aegyptius ATCC 11116]
Length = 390
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 180/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|304311805|ref|YP_003811403.1| hypothetical protein HDN1F_21750 [gamma proteobacterium HdN1]
gi|301797538|emb|CBL45758.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 410
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/354 (48%), Positives = 235/354 (66%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL ++ + ++ LGE PFRA Q+ KWIH FGV DF++MT++S LR+KLK I
Sbjct: 8 ANLLGMTRRELEDFFVSLGEKPFRAHQVMKWIHFFGVDDFDQMTNVSRDLREKLKAVAVI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
AP I + IS DGTRKW+ + N +ETVFIP+ NR TLC+S+QVGC+++C FCSTG+
Sbjct: 68 PAPAISYENISKDGTRKWVIRLDNGNAVETVFIPDGNRGTLCVSSQVGCSLDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF R+LT EII QLWV N +G R ITN+VMMGMGEPLLN + + A
Sbjct: 128 QGFQRDLTAAEIIAQLWVANRSFGVPDN-----KGHRNITNVVMMGMGEPLLNLDNVVSA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++ D YG++R+ V LSTSG++P + +L V LAVSLHA N+ LR++L+PI++K
Sbjct: 183 MEIMKDDLGYGVARKRVTLSTSGVVPKMYELFDRIDVSLAVSLHAPNDTLRDELMPINRK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL EL+ AC Y+ Y+ +T EY +L GINDT HA EL+ L+R KINL
Sbjct: 243 YPLAELLKACRYYVDKYNDGRRVTMEYVLLDGINDTFAHAAELVELLRD----VPSKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP++ R+K F ++L+ + TIR RG+DI+AACGQL G++
Sbjct: 299 IPFNPFPHAPYKRPNGYRVKAFQEVLLKADYVTTIRTTRGDDIDAACGQLVGQV 352
>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-4]
gi|122943998|sp|Q0HKW2.1|RLMN_SHESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
Length = 373
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 233/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSADGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|421666202|ref|ZP_16106294.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC087]
gi|410388127|gb|EKP40566.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC087]
Length = 410
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 244/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTSDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA + K
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHA----QQLLKLLK 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|429332403|ref|ZP_19213128.1| radical SAM protein [Pseudomonas putida CSV86]
gi|428762902|gb|EKX85092.1| radical SAM protein [Pseudomonas putida CSV86]
Length = 380
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 239/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLKN I
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKNCAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISADGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SVPATIDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNELVPINKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK ++ +C RY++ + ++T EY +L +ND HA E+ L++ CKINL
Sbjct: 243 YPLKVVLDSCMRYMSELGEKRVLTIEYTLLKDVNDQLEHAKEMAELLKD----VPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F + N+G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDYMHNAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-7]
gi|123326715|sp|Q0HX60.1|RLMN_SHESR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
Length = 373
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 233/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSTDGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|205829717|sp|A4VNX4.2|RLMN_PSEU5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 382
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N LR++LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNEALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RY++ + ++T EY +L G+ND HA ++I+L+ CKINLI
Sbjct: 244 PLDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|421655077|ref|ZP_16095401.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-72]
gi|408509214|gb|EKK10889.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-72]
Length = 410
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 244/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA + K
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHA----QQLLKLLK 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|359783459|ref|ZP_09286673.1| hypothetical protein PPL19_20431 [Pseudomonas psychrotolerans L19]
gi|359368676|gb|EHK69253.1| hypothetical protein PPL19_20431 [Pseudomonas psychrotolerans L19]
Length = 379
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 243/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FG+ DF+ M++L +L++KLK + I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGIDDFDAMSNLGKALKEKLKAAAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISRDGTRKWVIRVASGSCVETVYIPQNGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMI++LA++ V LA+SLHA N+ LRN+LVPI++KY
Sbjct: 184 RIMMDDLGYGISKRKVTLSTSGVVPMIEELAKQIDVSLALSLHAPNDELRNELVPINRKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI + ++T EY +L +ND HA+++I L+R CKINLI
Sbjct: 244 PLAMLLDACQRYIGQLGEKRVLTIEYTLLKDVNDLPEHALQMIELLRN----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S + + F ++L +G VT+R RG+DI+AACGQL G+++
Sbjct: 300 PFNPFPHSGYERPSKNATRRFQELLQQAGFNVTVRTTRGDDIDAACGQLVGQVM 353
>gi|452746471|ref|ZP_21946291.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri NF13]
gi|452009724|gb|EME01937.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri NF13]
Length = 382
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQSQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ I ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL+ L+ AC YI+ + ++T EY +L GIND HA ++I+L+ CKINLI
Sbjct: 244 PLEMLLAACKGYISRLGEKRVLTIEYTLLKGINDQPEHAEQMIALLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 238/354 (67%), Gaps = 14/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + + E P+RA+Q+ +WIH+ G++DF KMT+L +LR+KL IK
Sbjct: 7 NLLNYNYQQMRELLSSWDEQPYRAQQIIQWIHQAGLTDFAKMTNLGKTLREKLSQLSCIK 66
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++ Q S DGT KW+ ++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +Q
Sbjct: 67 LPEIIACQKSNDGTHKWLLKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG--KRQITNIVMMGMGEPLLNYKSTIG 179
GF RNLT EIIGQ+W+ +L + SQG +++TN+VMMGMGEPLLN+ + +
Sbjct: 127 GFNRNLTTAEIIGQVWLAVRELSQ-------SQGNHDKRVTNVVMMGMGEPLLNFDNVVS 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ +++ D AYGLS+R V LSTSG++P +++L + PV LAVSLHA N+ LRN+LVPI+K
Sbjct: 180 AMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSPVALAVSLHAPNDELRNELVPINK 239
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL +L+ C Y PR +TFEY ML G+ND HAI+LI L+R K+NL
Sbjct: 240 KYPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIKLLRN----IPAKVNL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP + S I F + LM GI RK RG+DI+AACGQL+G++
Sbjct: 296 IPFNPFPMTQYERSSQETIDAFREKLMAHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|410637360|ref|ZP_11347940.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142983|dbj|GAC15145.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
Length = 378
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/356 (49%), Positives = 237/356 (66%), Gaps = 12/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + + +GE PFRA QL KWI++ G +DF KMT+L+ SLR KL I
Sbjct: 10 TNLLDFNRQGLREFFASIGEKPFRADQLMKWIYQQGETDFEKMTNLNKSLRAKLVERCEI 69
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP I Q + DGT K+ ++ +ETV+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 70 KAPEIAYQQNATDGTIKFALKLEGGQEVETVWIPEADRATLCVSSQVGCALECTFCSTAQ 129
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLTV EIIGQ+W + K+ KR ITN+VMMGMGEPLLN K + A
Sbjct: 130 QGFNRNLTVSEIIGQVWRVATTIGLSKDT-----AKRPITNVVMMGMGEPLLNLKHVVPA 184
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+LR+++VP++KK
Sbjct: 185 MDIMLDDLGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTNDLRDEIVPVNKK 244
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ S + +T EY ML+GIND+ A +L ++++ T CKIN
Sbjct: 245 YPIEEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHQLAKVLKE----TPCKIN 300
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S CS NSRI F+K+LM GI V +RK RG+DI+AACGQL G ++
Sbjct: 301 LIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGITVVVRKTRGDDIDAACGQLVGDVV 356
>gi|445486268|ref|ZP_21457326.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii AA-014]
gi|444769753|gb|ELW93921.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii AA-014]
Length = 410
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 244/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA + K
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHA----QQLLKLLK 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|384130500|ref|YP_005513112.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2]
gi|385236097|ref|YP_005797436.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715]
gi|322506720|gb|ADX02174.1| Fe-S-cluster redox protein [Acinetobacter baumannii 1656-2]
gi|323516594|gb|ADX90975.1| Fe-S-cluster redox protein [Acinetobacter baumannii TCDC-AB0715]
Length = 406
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 244/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 27 NLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 86
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 87 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 146
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 147 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 203
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 204 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 263
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA + K
Sbjct: 264 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHA----QQLLKLLK 319
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 320 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 379
Query: 352 KI 353
++
Sbjct: 380 QV 381
>gi|339495157|ref|YP_004715450.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|338802529|gb|AEJ06361.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 382
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+ L+ AC RY++ + ++T EY +L G+ND HA ++I+L+ CKINLI
Sbjct: 244 PMDVLLAACKRYVSRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
Length = 391
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG DF+ MT+++ LR KLK IK
Sbjct: 26 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDDFDNMTNINKKLRDKLKQVAEIK 85
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 86 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 145
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 146 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 199
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 200 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPINKKY 259
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND+ HA +L +++ T KINL
Sbjct: 260 NIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQLAQVLKN----TPSKINL 315
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 316 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 370
>gi|169634407|ref|YP_001708143.1| hypothetical protein ABSDF3005 [Acinetobacter baumannii SDF]
gi|169797246|ref|YP_001715039.1| hypothetical protein ABAYE3266 [Acinetobacter baumannii AYE]
gi|184156828|ref|YP_001845167.1| Fe-S-cluster redox protein [Acinetobacter baumannii ACICU]
gi|213155960|ref|YP_002318005.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
gi|215484687|ref|YP_002326922.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
gi|239500768|ref|ZP_04660078.1| UPF0063 protein yfgB [Acinetobacter baumannii AB900]
gi|260556128|ref|ZP_05828347.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|301346479|ref|ZP_07227220.1| UPF0063 protein yfgB [Acinetobacter baumannii AB056]
gi|301510159|ref|ZP_07235396.1| UPF0063 protein yfgB [Acinetobacter baumannii AB058]
gi|301594216|ref|ZP_07239224.1| UPF0063 protein yfgB [Acinetobacter baumannii AB059]
gi|332851249|ref|ZP_08433322.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013150]
gi|332866104|ref|ZP_08436832.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013113]
gi|332873243|ref|ZP_08441200.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6014059]
gi|384141786|ref|YP_005524496.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|387125257|ref|YP_006291139.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter baumannii
MDR-TJ]
gi|403673374|ref|ZP_10935671.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter sp. NCTC
10304]
gi|407931433|ref|YP_006847076.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Acinetobacter baumannii
TYTH-1]
gi|416146605|ref|ZP_11601268.1| Fe-S-cluster redox protein [Acinetobacter baumannii AB210]
gi|417545629|ref|ZP_12196715.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC032]
gi|417548135|ref|ZP_12199216.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-18]
gi|417553673|ref|ZP_12204742.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-81]
gi|417562878|ref|ZP_12213757.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC137]
gi|417567490|ref|ZP_12218362.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC143]
gi|417570764|ref|ZP_12221621.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC189]
gi|417571721|ref|ZP_12222575.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii Canada
BC-5]
gi|417576717|ref|ZP_12227562.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-17]
gi|417871142|ref|ZP_12516085.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH1]
gi|417875805|ref|ZP_12520608.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH2]
gi|417879697|ref|ZP_12524254.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH3]
gi|417882139|ref|ZP_12526447.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH4]
gi|421200837|ref|ZP_15657996.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC109]
gi|421201859|ref|ZP_15659014.1| uncharacterized protein family [Acinetobacter baumannii AC12]
gi|421454293|ref|ZP_15903642.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-123]
gi|421535215|ref|ZP_15981477.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii AC30]
gi|421620753|ref|ZP_16061682.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC074]
gi|421630636|ref|ZP_16071337.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC180]
gi|421634193|ref|ZP_16074812.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-13]
gi|421642817|ref|ZP_16083328.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-235]
gi|421649373|ref|ZP_16089768.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-251]
gi|421651011|ref|ZP_16091383.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC0162]
gi|421659226|ref|ZP_16099447.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-83]
gi|421671095|ref|ZP_16111077.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC099]
gi|421675963|ref|ZP_16115882.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC065]
gi|421677610|ref|ZP_16117502.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC111]
gi|421688242|ref|ZP_16127942.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-143]
gi|421692446|ref|ZP_16132097.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-116]
gi|421697894|ref|ZP_16137438.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-58]
gi|421702233|ref|ZP_16141718.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter baumannii
ZWS1122]
gi|421705972|ref|ZP_16145393.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter baumannii
ZWS1219]
gi|421789328|ref|ZP_16225590.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-82]
gi|421792264|ref|ZP_16228419.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-2]
gi|421798258|ref|ZP_16234283.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-21]
gi|421798769|ref|ZP_16234780.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii Canada
BC1]
gi|421805823|ref|ZP_16241699.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
WC-A-694]
gi|421808002|ref|ZP_16243859.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC035]
gi|424053744|ref|ZP_17791275.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii Ab11111]
gi|424061188|ref|ZP_17798678.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii Ab33333]
gi|424064679|ref|ZP_17802163.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii Ab44444]
gi|425749235|ref|ZP_18867215.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-348]
gi|425751605|ref|ZP_18869550.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-113]
gi|445400160|ref|ZP_21429810.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-57]
gi|445446739|ref|ZP_21443370.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
WC-A-92]
gi|445458022|ref|ZP_21446846.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC047]
gi|445465240|ref|ZP_21450018.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC338]
gi|445481537|ref|ZP_21455981.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-78]
gi|205829659|sp|B2I3E2.1|RLMN_ACIBC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829701|sp|B0V4U0.1|RLMN_ACIBY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829716|sp|A3M208.2|RLMN_ACIBT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807143|sp|B7H072.1|RLMN_ACIB3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807144|sp|B7I5G4.1|RLMN_ACIB5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807145|sp|B0VKS2.1|RLMN_ACIBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169150173|emb|CAM88067.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
gi|169153199|emb|CAP02291.1| conserved hypothetical protein [Acinetobacter baumannii]
gi|183208422|gb|ACC55820.1| predicted Fe-S-cluster redox enzyme [Acinetobacter baumannii ACICU]
gi|193076307|gb|ABO10952.2| putative Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC
17978]
gi|213055120|gb|ACJ40022.1| radical SAM enzyme, Cfr family [Acinetobacter baumannii AB0057]
gi|213987723|gb|ACJ58022.1| UPF0063 protein yfgB [Acinetobacter baumannii AB307-0294]
gi|260410183|gb|EEX03482.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|332730129|gb|EGJ61456.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013150]
gi|332734850|gb|EGJ65943.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6013113]
gi|332738755|gb|EGJ69625.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
6014059]
gi|333365986|gb|EGK48000.1| Fe-S-cluster redox protein [Acinetobacter baumannii AB210]
gi|342224786|gb|EGT89804.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH2]
gi|342225963|gb|EGT90939.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH1]
gi|342227795|gb|EGT92708.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH3]
gi|342238388|gb|EGU02821.1| UPF0063 protein yfgB [Acinetobacter baumannii ABNIH4]
gi|347592279|gb|AEP05000.1| conserve hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|385879749|gb|AFI96844.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii MDR-TJ]
gi|395525460|gb|EJG13549.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC137]
gi|395551212|gb|EJG17221.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC189]
gi|395553162|gb|EJG19170.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC143]
gi|395562869|gb|EJG24522.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC109]
gi|395569938|gb|EJG30600.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-17]
gi|398328744|gb|EJN44867.1| uncharacterized protein family [Acinetobacter baumannii AC12]
gi|400207289|gb|EJO38259.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii Canada
BC-5]
gi|400213060|gb|EJO44017.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-123]
gi|400383517|gb|EJP42195.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC032]
gi|400388434|gb|EJP51506.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-18]
gi|400390090|gb|EJP57137.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-81]
gi|404559732|gb|EKA64983.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-116]
gi|404560985|gb|EKA66221.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-143]
gi|404572940|gb|EKA77980.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-58]
gi|404666870|gb|EKB34800.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii Ab33333]
gi|404667230|gb|EKB35151.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii Ab11111]
gi|404672762|gb|EKB40566.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii Ab44444]
gi|407194996|gb|EKE66132.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter baumannii
ZWS1122]
gi|407195385|gb|EKE66519.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter baumannii
ZWS1219]
gi|407900014|gb|AFU36845.1| 2-vinyl bacteriochlorophyllide hydratase [Acinetobacter baumannii
TYTH-1]
gi|408509023|gb|EKK10699.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC0162]
gi|408511383|gb|EKK13031.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-235]
gi|408514146|gb|EKK15758.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii IS-251]
gi|408697022|gb|EKL42542.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC180]
gi|408700030|gb|EKL45502.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC074]
gi|408704911|gb|EKL50267.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-13]
gi|408707937|gb|EKL53215.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-83]
gi|409986768|gb|EKO42959.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
baumannii AC30]
gi|410381480|gb|EKP34046.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC065]
gi|410383392|gb|EKP35925.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC099]
gi|410393366|gb|EKP45720.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC111]
gi|410394844|gb|EKP47168.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-21]
gi|410399258|gb|EKP51455.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-82]
gi|410400571|gb|EKP52739.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-2]
gi|410408085|gb|EKP60060.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
WC-A-694]
gi|410411418|gb|EKP63289.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii Canada
BC1]
gi|410416181|gb|EKP67956.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC035]
gi|425489308|gb|EKU55620.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-348]
gi|425500052|gb|EKU66080.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-113]
gi|444759681|gb|ELW84143.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
WC-A-92]
gi|444770329|gb|ELW94486.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-78]
gi|444775666|gb|ELW99722.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC047]
gi|444779372|gb|ELX03366.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC338]
gi|444783542|gb|ELX07401.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
Naval-57]
gi|452955781|gb|EME61178.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Acinetobacter baumannii
MSP4-16]
Length = 410
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 244/362 (67%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA + K
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHA----QQLLKLLK 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|146308518|ref|YP_001188983.1| radical SAM protein [Pseudomonas mendocina ymp]
gi|421505105|ref|ZP_15952045.1| radical SAM protein [Pseudomonas mendocina DLHK]
gi|205829652|sp|A4XY35.1|RLMN_PSEMY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145576719|gb|ABP86251.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas mendocina ymp]
gi|400344328|gb|EJO92698.1| radical SAM protein [Pseudomonas mendocina DLHK]
Length = 382
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF MT++ +LR+KL+ S I+
Sbjct: 9 NLLGLTQPEMEQFFESIGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLEASAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSENISADGTRKWVVRVASGSCVETVYIPQNGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT EIIGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSDLTSAEIIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVSAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMIDKLA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RY+ + ++T EY +L G+ND HA ++I+L+ CKINLI
Sbjct: 244 PLDMLLAACKRYVAKLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLAD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP S N+ I+ F +L +G VT+R RG+DI+AACGQL G+++
Sbjct: 300 PFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDAACGQLVGQVM 353
>gi|152979682|ref|YP_001345311.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
succinogenes 130Z]
gi|205829707|sp|A6VQX9.1|RLMN_ACTSZ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z]
Length = 371
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 6 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKQVAEIK 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 66 APEVAVEQRSSDGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 125
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 126 FNRNLTVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNMANVVPAM 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V +STSG++P +DKL + V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 180 EIMLDDFAYGLSKRRVTISTSGVVPALDKLPEMIDVALAISLHAPNDELRDEIVPINKKY 239
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY++ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 240 NIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAHQLADVLKN----TPCKINL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G VT+RK RG+DI+AACGQL+G ++
Sbjct: 296 IPWNPFPEAPYAKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAACGQLAGDVI 350
>gi|421618663|ref|ZP_16059638.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri KOS6]
gi|409779416|gb|EKN59074.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri KOS6]
Length = 382
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 240/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQSQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 HIMMDDLGYGISKRKVTLSTSGVLPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L GIND HA ++I+L+ CKINLI
Sbjct: 244 PLDVLLAACKRYISRLGEKRVLTVEYTLLKGINDQPEHAEQMIALLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|325272138|ref|ZP_08138570.1| radical SAM protein [Pseudomonas sp. TJI-51]
gi|324102734|gb|EGC00149.1| radical SAM protein [Pseudomonas sp. TJI-51]
Length = 381
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 239/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGVSDF MT++ +LR+KL+ I+
Sbjct: 9 NLLGLTQPEMEQFFDSIGEKRFRAGQVMKWIHHFGVSDFAAMTNVGKALREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 PPEVVSEDISADGTRKWVIRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKMLLESCMGYMATLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|421662110|ref|ZP_16102278.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC110]
gi|421694028|ref|ZP_16133660.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-692]
gi|404569867|gb|EKA74952.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-692]
gi|408714913|gb|EKL60043.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii
OIFC110]
Length = 410
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/362 (49%), Positives = 247/362 (68%), Gaps = 18/362 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IK
Sbjct: 31 NLLGMSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIK 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIF 115
AP ++ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C F
Sbjct: 91 APEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSF 150
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175
CSTG+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY
Sbjct: 151 CSTGKQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYD 207
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LV
Sbjct: 208 AVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELV 267
Query: 236 PISKKYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
PI+KKYPL +LI AC RYI S R +T EY ML G+ND HA +L+ L+
Sbjct: 268 PINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVNDQPEHAQQLLKLL----K 323
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G
Sbjct: 324 NLPSKINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVG 383
Query: 352 KI 353
++
Sbjct: 384 QV 385
>gi|417843004|ref|ZP_12489081.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21127]
gi|341950238|gb|EGT76827.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21127]
Length = 383
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
ANA-3]
gi|205829885|sp|A0KUJ2.1|RLMN_SHESA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
Length = 373
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 232/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSTDGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKET-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|330504682|ref|YP_004381551.1| radical SAM protein [Pseudomonas mendocina NK-01]
gi|328918968|gb|AEB59799.1| radical SAM protein [Pseudomonas mendocina NK-01]
Length = 382
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF MT++ +LR+KL+ S I+
Sbjct: 9 NLLGLTQPEMEQFFESIGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLEASAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSENISADGTRKWVVRVASGSCVETVYIPQNGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT EIIGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSDLTSAEIIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVSAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D YG+S+R V LSTSG++PMIDKLA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 QIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RY++ + ++T EY +L G+ND HA ++I+L+ CKINLI
Sbjct: 244 PLDMLLAACKRYVSKLGEKRVLTIEYTLLKGVNDQLEHAEQMIALLAD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP S N+ I+ F +L +G VT+R RG+DI+AACGQL G+++
Sbjct: 300 PFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRATRGDDIDAACGQLVGQVM 353
>gi|152989129|ref|YP_001346692.1| hypothetical protein PSPA7_1308 [Pseudomonas aeruginosa PA7]
gi|205829634|sp|A6V0V7.1|RLMN_PSEA7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150964287|gb|ABR86312.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 378
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I+
Sbjct: 9 NLLGLTQPQLEQFFESIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKAFAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEIVSQDISADGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +L+ E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSDLSAAEVIGQVWIANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMIDKL + V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 NIMMDDLGYGISKRKVTLSTSGVVPMIDKLGEVIDVSLALSLHAPNDELRNRLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC RYI+ + ++T EY +L +ND HA ++I+L++ T CKINLI
Sbjct: 244 PLTMLLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAEQMIALLKD----TPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F +L G VT+R RG+DI+AACGQL G+++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHKGGFNVTVRTTRGDDIDAACGQLVGQVM 353
>gi|417852143|ref|ZP_12497780.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
gi|338217648|gb|EGP03496.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
Length = 394
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 29 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKQVAEIK 88
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 89 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 148
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 149 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 202
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LAVSLHA N+ LR+++VPI+KKY
Sbjct: 203 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAVSLHAPNDELRDEIVPINKKY 262
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 263 NIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKN----TPCKINL 318
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 373
>gi|365966432|ref|YP_004947994.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745345|gb|AEW76250.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 379
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 14 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 74 APEVAVEQRSADGTTKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 133
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 134 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 188 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 247
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINL
Sbjct: 248 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 304 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 358
>gi|90417489|ref|ZP_01225412.1| hypothetical protein GB2207_07422 [gamma proteobacterium HTCC2207]
gi|90330730|gb|EAS46009.1| hypothetical protein GB2207_07422 [marine gamma proteobacterium
HTCC2207]
Length = 392
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 237/355 (66%), Gaps = 12/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL LS + ++ + LGE FR Q+ KWIH++G+ D N+MT++S SLR+ L + +
Sbjct: 20 TNLLGLSASRIGDFLESLGEKRFRGTQILKWIHQYGIDDLNEMTNISKSLRESLADVAEV 79
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P ++S Q S DGTRKW+ V + IE V+IPE++R TLC+S+Q+GCA++C FC+TG+
Sbjct: 80 VMPEVVSCQDSVDGTRKWLIKVDGGSCIEMVYIPERDRGTLCVSSQIGCALDCSFCATGK 139
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF R+LT EIIGQLW+ + +++ R++TN+VMMGMGEPL+N+ + + A
Sbjct: 140 QGFARDLTTAEIIGQLWIAAKSFD-----QFDTKNPRRVTNVVMMGMGEPLMNFNNVVDA 194
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D+AYGLS+R V LST+G++P +DKL V LA+SLHA N+ LRN+LVPI++K
Sbjct: 195 MSLMMDDNAYGLSKRRVTLSTAGVVPELDKLGDVSDVSLAISLHAPNDELRNQLVPINRK 254
Query: 241 YPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL + I + RY+ P R +T EY ++ +ND D HA EL L+R CKIN
Sbjct: 255 YPLVDFIGSAKRYLDKMPDNRRKVTVEYTLMDRVNDRDEHAKELSVLLRD----LPCKIN 310
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S + F IL N G VT+R RG+DI AACGQL+G++
Sbjct: 311 LIPFNPFPGSEYKKVTKVALNRFRDILQNDGYTVTVRTTRGDDIAAACGQLAGEV 365
>gi|336310628|ref|ZP_08565600.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
gi|386314500|ref|YP_006010665.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|205829898|sp|A1RHQ0.2|RLMN_SHESW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|335866358|gb|EGM71349.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
Length = 373
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 232/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSFQKSTDGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GDRPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|145628721|ref|ZP_01784521.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
22.1-21]
gi|144979191|gb|EDJ88877.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
22.1-21]
Length = 383
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + K+LGE PFRA QL KWI+ FG +F+KMT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKQLGEKPFRADQLVKWIYHFGEDNFDKMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|163749560|ref|ZP_02156807.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
gi|161330670|gb|EDQ01607.1| hypothetical protein KT99_16109 [Shewanella benthica KT99]
Length = 373
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 234/355 (65%), Gaps = 14/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL ++GE PFRA QL KWI+ FGVSDF MT+++ LR KL S IK
Sbjct: 7 NLLDLDRKGLRALFTDMGEKPFRADQLMKWIYHFGVSDFEVMTNINKVLRAKLAASCEIK 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSADGTIKFSINVGDGQEVETVYIPEGDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EIIGQ+W V +F I G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLTVSEIIGQVWRVADFIGF------IKKTGERPITNVVMMGMGEPLLNLKNVIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D + LS+R V LSTSG++P +DKL V LAVS+HA+N+ LR+ LVP++KK
Sbjct: 181 MDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAANDELRDVLVPVNKK 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL+E + + RYI S R +T EY ML IND+ A EL LM+ T CKIN
Sbjct: 241 YPLQEFLASIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN +P S S NSRI F+K+LM G V +RK RG DI+AACGQL+G I
Sbjct: 297 LIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGEDIDAACGQLAGDI 351
>gi|381151853|ref|ZP_09863722.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
gi|380883825|gb|EIC29702.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
Length = 370
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 231/352 (65%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + E GE PFRA QL KWI++ GV DF MT+LS LR L I+
Sbjct: 14 NLLDFDRKGLGAFFVEHGEKPFRATQLLKWIYQEGVDDFEAMTNLSKPLRAWLTAHCRIE 73
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I+ +Q + DGT KW+ N +ETVFIPE++R TLC+S+Q+GCA+ C FCST +Q
Sbjct: 74 APEIVLEQQASDGTCKWVLETHCGNRVETVFIPEESRGTLCVSSQIGCALACSFCSTAQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL EIIGQ+ + +L E R+ITN+VMMGMGEPLLN+ + + A+
Sbjct: 134 GFNRNLATSEIIGQVLAAQKRLGSE----------RKITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D A+GLS+R V LSTSG++P + +L + C V LAVSLHA + LR++LVPI+KKY
Sbjct: 184 NLMMDDFAFGLSKRRVTLSTSGVVPAMYRLTEVCDVSLAVSLHAVRDELRDQLVPINKKY 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC +PR ITFEY ML GIND+ A LI L+ K+NLIP
Sbjct: 244 PLSELMEACRDNAKLAPRRTITFEYVMLDGINDSPEDAKGLIELLST----VPSKLNLIP 299
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS CS N+RI +F +L +GI T+RK RG+DI+AACGQL GK+
Sbjct: 300 FNPFPNSPYRCSSNNRINLFKTMLNEAGIVTTVRKTRGDDIDAACGQLVGKV 351
>gi|417840793|ref|ZP_12486901.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19501]
gi|419839249|ref|ZP_14362662.1| 23S rRNA m2A2503 methyltransferase [Haemophilus haemolyticus HK386]
gi|341950604|gb|EGT77191.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19501]
gi|386909557|gb|EIJ74226.1| 23S rRNA m2A2503 methyltransferase [Haemophilus haemolyticus HK386]
Length = 383
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|417844951|ref|ZP_12490987.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21639]
gi|341956152|gb|EGT82591.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21639]
Length = 390
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 180/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNVANVIPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|417839341|ref|ZP_12485528.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19107]
gi|341953386|gb|EGT79893.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M19107]
Length = 383
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLIKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|342904040|ref|ZP_08725842.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
gi|342904658|ref|ZP_08726457.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
gi|341953079|gb|EGT79593.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
gi|341954049|gb|EGT80543.1| Ribosomal RNA large subunit methyltransferase N [Haemophilus
haemolyticus M21621]
Length = 383
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|145636367|ref|ZP_01792036.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
gi|148825353|ref|YP_001290106.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae PittEE]
gi|145270532|gb|EDK10466.1| hypothetical protein CGSHiHH_07816 [Haemophilus influenzae PittHH]
gi|148715513|gb|ABQ97723.1| hypothetical protein CGSHiEE_01185 [Haemophilus influenzae PittEE]
Length = 383
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLADVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
amazonensis SB2B]
gi|205829877|sp|A1S866.1|RLMN_SHEAM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 373
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 236/354 (66%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA+Q+ +WI+ FGVSDF +MT+++ ++R KL I
Sbjct: 7 NLLDLDLPGLKALLTEMGEKPFRAQQIMQWIYHFGVSDFEQMTNINKAMRAKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEITSYQKSSDGTIKFAINVGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L +K G+R I+N+VMMGMGEPLLN + + A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFQKET-----GERPISNVVMMGMGEPLLNLANVVPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D+ +GLS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVPI+KKY
Sbjct: 182 NIMLDDYGFGLSKRRVTLSTSGVVPALDKLGDVIDVALAVSIHAPNDELRDVLVPINKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + A RY+ S R +T EY ML IND+ A EL LM+ T CKINL
Sbjct: 242 PLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHELAKLMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI FAK+LM + V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFAKVLMEYDLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989.1|RLMN_ALHEH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 172/352 (48%), Positives = 231/352 (65%), Gaps = 14/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA Q+ KW+H+ V+ F +MTD+S +LR +L V ++
Sbjct: 2 NLLDLDRQALKRLFADLGEKPFRATQVLKWVHQRRVTGFEEMTDISKALRARLAERVALR 61
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++++Q+S DGTRKW+ V IETVFIP+ R TLC+S+QVGCA++C FCST +Q
Sbjct: 62 LPEVLAEQVSEDGTRKWLLRVDGGQAIETVFIPDSGRGTLCVSSQVGCALDCSFCSTAQQ 121
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ +V +L + QITN+V MGMGEPLLN ++ I A+
Sbjct: 122 GFNRNLSTAEIIGQYYVAYDQL---------TGTGEQITNVVFMGMGEPLLNLEAVIPAV 172
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+ D AYGLS+R V +STSG++ M++++ ++ V LAVSLHA NN LR++LVPI++K+
Sbjct: 173 RLMTDDDAYGLSKRKVTISTSGVVTMLERMREQTDVSLAVSLHAPNNALRDELVPINRKH 232
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL+ LI AC YI P IT+EY ML G+ND D HA EL L+ K+NLIP
Sbjct: 233 PLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARLLGD----IPSKVNLIP 288
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + CS RI F +IL + G+ T R RG DI+ ACGQL GK+
Sbjct: 289 FNPFPGARYRCSPRGRILRFVRILQSHGLTATTRVTRGQDIDGACGQLVGKV 340
>gi|358450412|ref|ZP_09160875.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
gi|385331231|ref|YP_005885182.1| hypothetical protein HP15_1490 [Marinobacter adhaerens HP15]
gi|311694381|gb|ADP97254.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
gi|357225343|gb|EHJ03845.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
Length = 370
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 234/354 (66%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL + K + + LGE FRA Q+ +WIH+ G DF++MT++S +LR+KLK I
Sbjct: 8 TNLLGMPKAKLEAFFESLGEKRFRATQVLQWIHQRGADDFDQMTNMSKALREKLKQVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ D+ S DGTRKW+ + N +ETV IP+ R TLC+S+Q+GC+++C FCSTG+
Sbjct: 68 RGPEVVYDETSKDGTRKWVMRMDNGNSVETVLIPDGERGTLCVSSQIGCSLDCTFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
+GF RNLT E+IGQ+WV R+ + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 RGFNRNLTAAEVIGQVWVA-----RKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D AYG+S+R V LSTSG++P +D+L++ V LA+SLHA N+ LRNKLVP++KK
Sbjct: 183 MNLMMEDLAYGISKRRVTLSTSGVVPALDRLSEVTDVSLAISLHAPNDELRNKLVPLNKK 242
Query: 241 YPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+ EL+ A RY P + T EY ++ G+ND HA EL L+R CKINL
Sbjct: 243 YPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELAVLLRD----LPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S+ + + F +L +G TIR RG+DI+AACGQL G++
Sbjct: 299 IPFNPFPESDFRRPSMNATRRFQNVLNEAGYITTIRTTRGDDIDAACGQLVGRV 352
>gi|261868678|ref|YP_003256600.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415769939|ref|ZP_11484554.1| hypothetical protein D17P2_1559 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|444345782|ref|ZP_21153788.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261414010|gb|ACX83381.1| hypothetical protein D11S_2027 [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348656972|gb|EGY74569.1| hypothetical protein D17P2_1559 [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443542515|gb|ELT52840.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 379
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 14 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 74 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRTTLCVSSQVGCALACTFCSTAQQG 133
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 134 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 188 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 247
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINL
Sbjct: 248 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 304 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 358
>gi|416052916|ref|ZP_11578551.1| hypothetical protein SC1083_1732 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|418464924|ref|ZP_13035863.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|347991708|gb|EGY33171.1| hypothetical protein SC1083_1732 [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|359756879|gb|EHK91036.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 379
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 14 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTVAEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 74 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 133
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 134 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 188 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 247
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINL
Sbjct: 248 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 304 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 358
>gi|26987586|ref|NP_743011.1| radical SAM enzyme, Cfr family [Pseudomonas putida KT2440]
gi|148546124|ref|YP_001266226.1| radical SAM protein [Pseudomonas putida F1]
gi|386010513|ref|YP_005928790.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
gi|395447288|ref|YP_006387541.1| radical SAM enzyme, Cfr family [Pseudomonas putida ND6]
gi|81586431|sp|Q88PK0.1|RLMN_PSEPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829824|sp|A5VYT2.1|RLMN_PSEP1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24982262|gb|AAN66475.1|AE016276_10 conserved hypothetical protein TIGR00048 [Pseudomonas putida
KT2440]
gi|148510182|gb|ABQ77042.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudomonas putida F1]
gi|313497219|gb|ADR58585.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
BIRD-1]
gi|388561285|gb|AFK70426.1| radical SAM enzyme, Cfr family [Pseudomonas putida ND6]
Length = 381
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 238/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGVSDF MT++ LR+KL+ I+
Sbjct: 9 NLLGLTQPEMEQFFDSIGEKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 PPEVVSEDISADGTRKWVIRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|383310914|ref|YP_005363724.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|421264754|ref|ZP_15715719.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|425064743|ref|ZP_18467868.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
gi|425066859|ref|ZP_18469979.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|380872186|gb|AFF24553.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|401687798|gb|EJS83499.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|404380645|gb|EJZ77135.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|404380929|gb|EJZ77418.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
Length = 394
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 29 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKQVAEIK 88
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 89 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 148
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 149 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 202
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 203 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPINKKY 262
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 263 NIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKN----TPCKINL 318
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 373
>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
putrefaciens CN-32]
gi|205829884|sp|A4Y8U3.1|RLMN_SHEPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
Length = 373
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 231/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSFQKSTDGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GDRPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMED----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|15603872|ref|NP_246946.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Pm70]
gi|378774950|ref|YP_005177193.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
gi|81636369|sp|Q9CJJ8.1|RLMN_PASMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597498|gb|AET16224.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
Length = 394
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 29 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKQVAEIK 88
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 89 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 148
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 149 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 202
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 203 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPINKKY 262
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 263 NIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKN----TPCKINL 318
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 373
>gi|397696914|ref|YP_006534797.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
DOT-T1E]
gi|421524502|ref|ZP_15971124.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
LS46]
gi|397333644|gb|AFO50003.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
DOT-T1E]
gi|402751681|gb|EJX12193.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas putida
LS46]
Length = 381
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 238/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGVSDF MT++ LR+KL+ I+
Sbjct: 9 NLLGLTQPEMEQFFDSIGEKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 PPEVVSEDISADGTRKWVIRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKMLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|167031908|ref|YP_001667139.1| radical SAM protein [Pseudomonas putida GB-1]
gi|205829825|sp|B0KPI4.1|RLMN_PSEPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|166858396|gb|ABY96803.1| radical SAM enzyme, Cfr family [Pseudomonas putida GB-1]
Length = 381
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 238/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGVSDF MT++ LR+KL+ I+
Sbjct: 9 NLLGLTQPEMEQFFDSIGEKRFRAGQVMKWIHHFGVSDFAAMTNVGKVLREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 PPEVVSEDISADGTRKWVIRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKVDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKVLLESCMGYMSTLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|373467502|ref|ZP_09558798.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758536|gb|EHO47303.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
Length = 390
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|392420160|ref|YP_006456764.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri CCUG 29243]
gi|390982348|gb|AFM32341.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri CCUG 29243]
Length = 382
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M++L +LR+KLK I+
Sbjct: 9 NLLGLTQSQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNLGKALREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ I ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSNLTAAEVIGQVWIANKSFG-----SIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 184 HIMMDDLGYGISKRKVTLSTSGVVPMIDELAKVIDVSLALSLHAPNDALRDQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL L+ AC YI+ + ++T EY +L GIND HA ++I+L+ CKINLI
Sbjct: 244 PLDMLLAACKGYISRLGEKRVLTIEYTLLKGINDQPEHAEQMITLLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL G VT+R RG DI+AACGQL G++L
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKGGHNVTVRTTRGEDIDAACGQLVGQVL 353
>gi|24374826|ref|NP_718869.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
gi|81589118|sp|Q8EC29.1|RLMN_SHEON RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24349512|gb|AAN56313.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
Length = 373
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 231/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISGYQKSADGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKET-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|416076401|ref|ZP_11585482.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348005005|gb|EGY45495.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
Length = 379
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 14 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 74 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 133
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 134 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 188 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 247
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINL
Sbjct: 248 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 304 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 358
>gi|68248968|ref|YP_248080.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae 86-028NP]
gi|81336620|sp|Q4QNH7.1|RLMN_HAEI8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|68057167|gb|AAX87420.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae
86-028NP]
Length = 390
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGIEHAHQLAEVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|386265240|ref|YP_005828732.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
gi|205829858|sp|A5UAC2.2|RLMN_HAEIE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|309972476|gb|ADO95677.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2846]
Length = 390
Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLADVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|410612514|ref|ZP_11323591.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
psychrophila 170]
gi|410167855|dbj|GAC37480.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
psychrophila 170]
Length = 380
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 174/356 (48%), Positives = 243/356 (68%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + E+GE PFRA+Q+ KWI++ GV+DF +M++L+ +LR KL+ +K
Sbjct: 14 NLLDLTREGLRTFFNEMGEKPFRAEQVMKWIYQQGVADFEQMSNLNKALRAKLQAKCEVK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I + + DGT K+ ++ +ETV+IP+ +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 74 APEIAYQKTAADGTIKFALKLEGGQEVETVWIPDGDRATLCVSSQVGCALECTFCSTGQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R I +N+ KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 134 GFNRNLKVSEIIGQVW------RVATTIGLNNDTAKRPITNVVMMGMGEPLLNVKNVVPA 187
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA +N LR+ LVP++KK
Sbjct: 188 MELMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDNALRDVLVPVNKK 247
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++ + + RY+ S + +T EY ML+GIND+ A L ++ T CKIN
Sbjct: 248 YPIEVFLASVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLAD----TPCKIN 303
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S CS NSRI FAK+LM G+ V +R+ RG+DI+AACGQL G+++
Sbjct: 304 LIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGLIVVVRRTRGDDIDAACGQLVGEVV 359
>gi|145634639|ref|ZP_01790348.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
gi|229844547|ref|ZP_04464687.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
6P18H1]
gi|145268184|gb|EDK08179.1| hypothetical protein CGSHiAA_05421 [Haemophilus influenzae PittAA]
gi|229812796|gb|EEP48485.1| hypothetical protein CGSHi6P18H1_09535 [Haemophilus influenzae
6P18H1]
Length = 383
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKVVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLADVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
2336]
gi|205829771|sp|B0UWR0.1|RLMN_HAES2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829859|sp|Q0I3U8.2|RLMN_HAES1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
Length = 372
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + +ELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 6 NLMNLTRQQMRAFFQELGEKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAEIK 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 66 APEIAVEQRSADGTIKWAMQVGDQQVETVYIPETDRATLCVSSQVGCALACTFCSTAQQG 125
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 126 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LRN++VPI+KKY
Sbjct: 180 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRNEIVPINKKY 239
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY+ S + +T EY ML IND HA +L +++ T CKINL
Sbjct: 240 NIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLKN----TPCKINL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP++ S N+RI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 296 IPWNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQLAGDVI 350
>gi|335420573|ref|ZP_08551611.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
gi|334894932|gb|EGM33117.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
Length = 393
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 238/357 (66%), Gaps = 14/357 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL L + +E GE FRAKQ+ +WI+ GV+DF+ MTDLS +LR++L + I+
Sbjct: 22 NLFGLDREAMSAFFREHGESAFRAKQVMQWIYARGVTDFSAMTDLSKALRERLPDIAEIR 81
Query: 63 APHIMSDQISFDGTRKWIFHVKK-----NIIETVFIPEKNRNTLCISTQVGCAINCIFCS 117
P + +Q + DGTRKW+ V + N IE V+IPE +R TLCIS+Q+GCA++C FC+
Sbjct: 82 PPAKIREQKASDGTRKWLLAVTEDLDPDNAIEAVYIPEADRATLCISSQIGCALDCSFCA 141
Query: 118 TGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
TG+QG RNLT EI+GQ+W+ E LR + + G+R ++NIV MGMGEPL NY++
Sbjct: 142 TGKQGLNRNLTTAEIVGQVWMAEHDLRAQGLV----HGERALSNIVFMGMGEPLANYRAV 197
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D+ +GLS+R V +STSG++P +D+L +E V LAVSLHA ++LR++LVPI
Sbjct: 198 VPAIRILLDDYGFGLSKRRVTVSTSGMVPFMDRLREEVDVALAVSLHAPTDDLRDELVPI 257
Query: 238 SKKYPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KYPL EL+ AC RY+ R + +EY +L+G+ND A L+ L+ K
Sbjct: 258 NRKYPLAELMGACDRYVEGKQRRAHVVYEYVLLNGVNDNPEQARGLVKLLADR----PAK 313
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
INLIPFN F S +RI+ F IL N G+ T+R+ RG+DI+AACGQL G++
Sbjct: 314 INLIPFNAFDGSGYTRPDEARIRQFQDILHNKGLRTTVRRTRGDDIDAACGQLVGRV 370
>gi|444344086|ref|ZP_21152412.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443544811|gb|ELT54724.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 386
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 21 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINL
Sbjct: 255 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 365
>gi|153208845|ref|ZP_01947069.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165921447|ref|ZP_02219635.1| radical SAM enzyme, Cfr family [Coxiella burnetii Q321]
gi|212218666|ref|YP_002305453.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
gi|254807166|sp|B6J7Q9.1|RLMN_COXB1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120575696|gb|EAX32320.1| radical SAM enzyme, Cfr family [Coxiella burnetii 'MSU Goat Q177']
gi|165916762|gb|EDR35366.1| radical SAM enzyme, Cfr family [Coxiella burnetii Q321]
gi|212012928|gb|ACJ20308.1| radical SAM family enzyme [Coxiella burnetii CbuK_Q154]
Length = 370
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 236/352 (67%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+LS + + G+ +RA QL +WIH+ GV+DF+ MTDLS R++L + +++
Sbjct: 6 NLLNLSETELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVR 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +++S DGT KW+F + N IETVFIP++ R TLC+S+QVGCA+NC FC+TG++
Sbjct: 66 VPELALERVSADGTHKWLFRLADNNKIETVFIPDRKRGTLCVSSQVGCALNCSFCATGKE 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT+ EIIGQ+W+ L+ +ITN+VMMGMGEPLLNY++ + A+
Sbjct: 126 GFNRNLTLAEIIGQVWLAARLLK----------SPYKITNVVMMGMGEPLLNYEAVVAAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ DHAYGLS+ V LSTSG+IP + +L +E PV LAVSLHA N+ LRN L+P++KKY
Sbjct: 176 HLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
L +LI C Y + + +TFEY M+ G+ND I A +LI L+ CKINLIP
Sbjct: 236 SLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLAD----VPCKINLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN F + CS S I +F K LM++G +R+ RG+DI ACGQL+G+
Sbjct: 292 FNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLAGQF 343
>gi|387121565|ref|YP_006287448.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415764025|ref|ZP_11482286.1| hypothetical protein D17P3_1796 [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416036699|ref|ZP_11573803.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416049246|ref|ZP_11576544.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347991906|gb|EGY33348.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347996209|gb|EGY37317.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348654376|gb|EGY70003.1| hypothetical protein D17P3_1796 [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876057|gb|AFI87616.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 379
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 14 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 74 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 133
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 134 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 188 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 247
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L +++ T CKINL
Sbjct: 248 NIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAEVLKN----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 304 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 358
>gi|374702664|ref|ZP_09709534.1| radical SAM protein [Pseudomonas sp. S9]
Length = 382
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 171/354 (48%), Positives = 243/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FG+ DF+ M+++S LR+KLK I+
Sbjct: 9 NLLGLTQQEMEQFFDSIGEKRFRAGQIMKWIHHFGIDDFDAMSNVSKVLREKLKACAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISTDGTRKWVVRVASGSCVETVYIPQGARGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT EIIGQ+W++ K + KI+ R +TN+VMMGMGEPLLN+ + + ++
Sbjct: 129 GFNSDLTAAEIIGQVWISN-KSFGTQPAKID----RAVTNVVMMGMGEPLLNFDNVVASM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMIDKLA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRKVTLSTSGVVPMIDKLAEVIDVSLALSLHAPNDALRNQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL+ L+ AC RY++ + ++T EY +L +ND HA E+I+L++ CKINLI
Sbjct: 244 PLEMLLAACKRYVSRLGEKRVLTIEYTLLKDVNDKIEHAEEMIALLKD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 300 PFNPFPFSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|389793875|ref|ZP_10197036.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter fulvus
Jip2]
gi|388433508|gb|EIL90474.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter fulvus
Jip2]
Length = 377
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 239/352 (67%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD ++ ++GE P+RA+Q+ KWI+ +F MTD+ +LR KL YI
Sbjct: 13 NLLDFDRRGLRDFFTQIGEKPYRAEQVMKWIYHDLEDNFENMTDVGKALRAKLTEVCYIG 72
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + ++++ DGT KW+ + N IETV+IPE R TLC+S+Q+GCA+NC FCSTG Q
Sbjct: 73 APKTLLNKVATDGTHKWLLGMDSGNAIETVYIPEPTRGTLCVSSQIGCALNCGFCSTGAQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+WV +L N+ + R+ITN+VMMGMGEPL N+ + + A+
Sbjct: 133 GFNRNLSTAEIIGQVWVAAKQL---GNV---THQNRRITNVVMMGMGEPLANFDNVVRAM 186
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D +GL+ + V LST+G++P+ID+L+ + V LAVSLHA+N+ LR +L+PI+K+Y
Sbjct: 187 HLMRDDLGFGLASKRVTLSTAGMVPLIDQLSAQIDVSLAVSLHAANDELRTELMPINKRY 246
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ +L+ AC R+I PR ITFEY ++ G+ND HA +LI LMRK L +CK+NLIP
Sbjct: 247 PIADLLAACDRWIARKPRTSITFEYTLMKGVNDQPEHARQLIKLMRK---LPTCKVNLIP 303
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S + I F L+N+G+ +R+ RG+DI+AACGQL+G++
Sbjct: 304 FNPFPGTQYQRSDANDIHDFQTRLLNAGVLTMLRRTRGDDIDAACGQLAGQV 355
>gi|444349481|ref|ZP_21156908.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443544554|gb|ELT54520.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 394
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 21 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINL
Sbjct: 255 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 365
>gi|384082129|ref|ZP_09993304.1| radical SAM protein [gamma proteobacterium HIMB30]
Length = 376
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 240/353 (67%), Gaps = 10/353 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ K + +GE FR Q+ KWIH+ GV+DF++MT+LS SLR +LK+ ++
Sbjct: 10 NLLGLTLPKMEAFFLSIGEKKFRGAQMVKWIHQQGVTDFDQMTNLSKSLRDQLKDIAEVR 69
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + S DGTRKW+ V +ETV+IPE +R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 70 PPRVTFQGDSEDGTRKWLMEVDGGSKVETVYIPEGDRGTLCVSSQVGCSLDCSFCSTGKQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +NLT EIIGQ+++ + + + KR +TN+VMMGMGEPLLN++ + A+
Sbjct: 130 GFNKNLTAAEIIGQVFLAA----KSFGLPVKDSQKRSVTNVVMMGMGEPLLNFEPVVDAM 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D AYGLS+R V LSTSG++P +++LA+ V LAVSLHA N+ LRN+LVPI++KY
Sbjct: 186 SLMLEDQAYGLSKRRVTLSTSGVVPHLNELARVSDVALAVSLHAPNDELRNELVPINRKY 245
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+ L + Y+ S +TFEY ML G+ND+D A EL +L + + CKINLI
Sbjct: 246 PIAVLFDSIRNYLDGLSDNRSVTFEYTMLKGVNDSDELARELSTLAKTIR----CKINLI 301
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP + S +RI F +IL+N G VT+RK RG+DI+AACGQL+G++
Sbjct: 302 PFNPFPGTRYEVSSRNRIYAFQRILLNDGHVVTVRKTRGDDIDAACGQLAGQV 354
>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
W3-18-1]
gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
Length = 399
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 232/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 33 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 93 APEISSFQKSTDGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 152
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G R ITN+VMMGMGEPLLN + I A+
Sbjct: 153 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GDRPITNVVMMGMGEPLLNLANVIPAM 207
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 208 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 267
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 268 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKD----TPCKVNL 323
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 324 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 377
>gi|333985584|ref|YP_004514794.1| ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
gi|333809625|gb|AEG02295.1| Ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
Length = 371
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 233/352 (66%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + LGE PFRA QL KWI++ G DF+ MT+LS SLR LK + I+
Sbjct: 14 NLLDFDRKGLQAFFVGLGEKPFRATQLLKWIYQEGAVDFDDMTNLSKSLRSYLKENCCIR 73
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+++Q++ DGT KW N +ETV+IPE+ R TLCIS+QVGCA+ C FCST +Q
Sbjct: 74 TPEIVAEQLASDGTCKWAMQTHCGNKVETVYIPEERRATLCISSQVGCALACSFCSTAQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ E+IGQL++ + +L E +ITN+VMMGMGEPLLN+ + + A+
Sbjct: 134 GFNRNLSTAEVIGQLYLAQQRLGSE----------HRITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D A+GLS+R V +STSG++P + +L C V +AVSLHA N+ LRN+LVPI+ KY
Sbjct: 184 NLMMDDFAFGLSKRRVTISTSGVVPAMHRLHDVCDVSMAVSLHAPNDELRNQLVPINIKY 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC Y PR ITFEY ML GIND+ A L+ L++ K+NLIP
Sbjct: 244 PLTELMDACRAYAKNGPRKHITFEYVMLDGINDSMEDARTLVKLLKN----VPSKVNLIP 299
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S CS+ + I F IL N+GI TIRK RG+DI+AACGQL G++
Sbjct: 300 FNPFPQSQYRCSEMAAILKFRDILHNAGIVTTIRKTRGDDIDAACGQLVGQV 351
>gi|429733637|ref|ZP_19267704.1| 23S rRNA methyltransferase [Aggregatibacter actinomycetemcomitans
Y4]
gi|429154765|gb|EKX97478.1| 23S rRNA methyltransferase [Aggregatibacter actinomycetemcomitans
Y4]
Length = 386
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IK
Sbjct: 21 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L +++ T CKINL
Sbjct: 255 NIKNLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAEVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 365
>gi|378696548|ref|YP_005178506.1| hypothetical protein HIB_04760 [Haemophilus influenzae 10810]
gi|301169067|emb|CBW28664.1| predicted enzyme [Haemophilus influenzae 10810]
Length = 383
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGITGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L ++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLNN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS185]
gi|205829879|sp|A6WQQ0.1|RLMN_SHEB8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
Length = 373
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 232/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL ++GE PFRA QL KW++ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADMGEKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 67 APEISSFQKSTDGTIKFAINVGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTGQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVPI+KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPINKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL E + RYI S R +T EY ML IND+ A EL LM+ T CKINL
Sbjct: 242 PLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDI 351
>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
halifaxensis HAW-EB4]
gi|205829881|sp|B0TLI1.1|RLMN_SHEHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
Length = 373
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 233/355 (65%), Gaps = 14/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KWI+ FGVSDF +MT+++ LR KL I
Sbjct: 7 NLLDLDRKALRVLFTEMGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKLAAKCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSVDGTIKFAINVGDGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EI+GQ+W V +F + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLTVAEIVGQIWRVADFIGF------VKDTGERPITNVVMMGMGEPLLNLKNVIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KK
Sbjct: 181 MDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDVLVPVNKK 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+N
Sbjct: 241 YPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKVN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 297 LIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|387771212|ref|ZP_10127378.1| 23S rRNA m2A2503 methyltransferase [Pasteurella bettyae CCUG 2042]
gi|386902417|gb|EIJ67257.1| 23S rRNA m2A2503 methyltransferase [Pasteurella bettyae CCUG 2042]
Length = 371
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 6 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKTVAEIK 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 66 APEIAVEQRSSDGTIKWAMQVGDQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 125
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 126 FNRNLTVSEIIGQVW------RASKVIGEFGVTGIRPITNVVMMGMGEPLLNVANVVPAM 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L+ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 180 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAISLHAPNDELRDEIVPINKKY 239
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND+ HA +L +++ T CKINL
Sbjct: 240 NIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDSIEHAHQLAEVLKN----TPCKINL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+R+ F K LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 296 IPWNPFPEAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 350
>gi|229846452|ref|ZP_04466560.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
7P49H1]
gi|229810545|gb|EEP46263.1| hypothetical protein CGSHi7P49H1_07265 [Haemophilus influenzae
7P49H1]
Length = 383
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKTVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|416066265|ref|ZP_11581932.1| hypothetical protein D18P1_0025 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002861|gb|EGY43524.1| hypothetical protein D18P1_0025 [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 379
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ LR+KLK IK
Sbjct: 14 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKQLREKLKTMAEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 74 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 133
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 134 FNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 188 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 247
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML IND HA +L +++ T CKINL
Sbjct: 248 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAEVLKN----TPCKINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 304 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 358
>gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
Length = 384
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ LR+KLK+ IK
Sbjct: 19 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKLKSVAEIK 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 193 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 252
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 253 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEVLKN----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 363
>gi|431800905|ref|YP_007227808.1| radical SAM protein [Pseudomonas putida HB3267]
gi|430791670|gb|AGA71865.1| radical SAM protein [Pseudomonas putida HB3267]
Length = 378
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 239/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH +GV DF MT++ +LR+KL+ I+
Sbjct: 6 NLLGLTLQEMEKFFESIGEKRFRAGQVMKWIHHYGVDDFAAMTNVGKALREKLEAVAEIR 65
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 66 GPEVVSEDISADGTRKWVVRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 126 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 181 KIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 240
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 241 PLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 297 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 349
>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
pealeana ATCC 700345]
gi|205829883|sp|A8H242.1|RLMN_SHEPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
Length = 373
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 233/355 (65%), Gaps = 14/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KWI+ FGVSDF +MT+++ LR KL I
Sbjct: 7 NLLDLDRKALRALFTEMGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRAKLAAKCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSVDGTIKFAINVGDGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EI+GQ+W V +F + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLTVAEIVGQIWRVADFIGF------VKDTGERPITNVVMMGMGEPLLNLKNVIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KK
Sbjct: 181 MDIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDVLDVALAVSIHAPNDELRDVLVPVNKK 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+N
Sbjct: 241 YPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKVN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 297 LIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|29654554|ref|NP_820246.1| radical SAM protein [Coxiella burnetii RSA 493]
gi|154706747|ref|YP_001424689.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161830060|ref|YP_001597102.1| radical SAM protein [Coxiella burnetii RSA 331]
gi|81628860|sp|Q83C77.1|RLMN_COXBU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829741|sp|A9KFV0.1|RLMN_COXBN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829742|sp|A9NDW2.1|RLMN_COXBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|29541821|gb|AAO90760.1| radical SAM family enzyme [Coxiella burnetii RSA 493]
gi|154356033|gb|ABS77495.1| radical SAM family enzyme [Coxiella burnetii Dugway 5J108-111]
gi|161761927|gb|ABX77569.1| radical SAM enzyme, Cfr family [Coxiella burnetii RSA 331]
Length = 370
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 236/352 (67%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+LS + + G+ +RA QL +WIH+ GV+DF+ MTDLS R++L + +++
Sbjct: 6 NLLNLSEPELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVR 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +++S DGT KW+F + N IETVFIP++ R TLC+S+QVGCA+NC FC+TG++
Sbjct: 66 VPELALERVSADGTHKWLFRLADNNKIETVFIPDRKRGTLCVSSQVGCALNCSFCATGKE 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT+ EIIGQ+W+ L+ +ITN+VMMGMGEPLLNY++ + A+
Sbjct: 126 GFNRNLTLAEIIGQVWLAARLLK----------SPYKITNVVMMGMGEPLLNYEAVVAAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ DHAYGLS+ V LSTSG+IP + +L +E PV LAVSLHA N+ LRN L+P++KKY
Sbjct: 176 HLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
L +LI C Y + + +TFEY M+ G+ND I A +LI L+ CKINLIP
Sbjct: 236 SLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLAD----VPCKINLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN F + CS S I +F K LM++G +R+ RG+DI ACGQL+G+
Sbjct: 292 FNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLAGQF 343
>gi|421528926|ref|ZP_15975477.1| radical SAM protein [Pseudomonas putida S11]
gi|402213563|gb|EJT84909.1| radical SAM protein [Pseudomonas putida S11]
Length = 388
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 238/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH +GV DF MT++ +LR+KL+ I+
Sbjct: 9 NLLGLTLQEMEKFFESIGEKRFRAGQVMKWIHHYGVDDFAAMTNVGKALREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISADGTRKWVVRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVWLANKSFG-----TVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|170723489|ref|YP_001751177.1| radical SAM protein [Pseudomonas putida W619]
gi|205829826|sp|B1JDQ5.1|RLMN_PSEPW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169761492|gb|ACA74808.1| radical SAM enzyme, Cfr family [Pseudomonas putida W619]
Length = 381
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 238/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGV DF MT++ +LR+KL+ I+
Sbjct: 9 NLLGLTQPEMEQFFDSIGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 PPEVVSEDISADGTRKWVIRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKMLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|339485847|ref|YP_004700375.1| radical SAM protein [Pseudomonas putida S16]
gi|338836690|gb|AEJ11495.1| radical SAM protein [Pseudomonas putida S16]
Length = 381
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 239/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + + +GE FRA Q+ KWIH +GV DF MT++ +LR+KL+ I+
Sbjct: 9 NLLGLTLQEMEKFFESIGEKRFRAGQVMKWIHHYGVDDFAAMTNVGKALREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISADGTRKWVVRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|372270406|ref|ZP_09506454.1| radical SAM protein [Marinobacterium stanieri S30]
Length = 377
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/358 (46%), Positives = 241/358 (67%), Gaps = 22/358 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LSP K + + ++ GE FRA Q+ KW+H+ G S F++MT++S ++R KL I+
Sbjct: 9 NLLGLSPAKLIAFFEQQGEKKFRATQVLKWLHQQGASSFDEMTNISKAMRAKLAEVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ D+ S DGTRKW+ + + IE V IP+ +R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 69 EPEVLLDKTSRDGTRKWVIRMDGGSAIEMVLIPDGDRRTLCVSSQVGCSLDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-----KRQITNIVMMGMGEPLLNYKS 176
GF RNL+ EII QL V I S G KR +TN+VMMGMGEPL+N+++
Sbjct: 129 GFNRNLSTAEIIAQLRVA-----------IRSCGPFEPSKRHVTNVVMMGMGEPLMNFEN 177
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ A +L++ D+AYGLS+R V LST+G++P +DKL+Q V LA+SLHA NN LR++LVP
Sbjct: 178 VVDATQLMMDDNAYGLSKRRVTLSTAGVVPALDKLSQVSDVSLAISLHAPNNELRDQLVP 237
Query: 237 ISKKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
I+K+YP++ELI A +RY+ P + T EY ++ G+ND HA EL L+++ C
Sbjct: 238 INKRYPIEELIAASNRYLESLPDKRAATVEYTLIDGVNDQPEHARELAKLLKQ----LPC 293
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K+NLIPFN FPNS I+ F IL+ + I T+R+ RG+D++AACGQL G++
Sbjct: 294 KLNLIPFNPFPNSGYRRPSEQAIQRFKDILVRASIITTVRRTRGDDVDAACGQLVGQV 351
>gi|104780237|ref|YP_606735.1| radical SAM protein [Pseudomonas entomophila L48]
gi|122985951|sp|Q1IEI4.1|RLMN_PSEE4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|95109224|emb|CAK13921.1| putative radical SAM enzyme, Cfr family [Pseudomonas entomophila
L48]
Length = 379
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 237/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGV DF MT++ LR+KL+ I+
Sbjct: 9 NLLGLTLAEMEQFFDSIGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKVLREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISADGTRKWVVRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRNKLVPI+KKY
Sbjct: 184 KIMMEDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNKLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKMLLESCMGYMSTLGGKRVLTIEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG+DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGDDIDAACGQLVGQV 352
>gi|397687678|ref|YP_006524997.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 10701]
gi|395809234|gb|AFN78639.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri DSM 10701]
Length = 381
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M+++ +LR+KLK S I+
Sbjct: 9 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNIGKALREKLKASSEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 GPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQNGRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT EIIGQ+W+ + ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 129 GFNSDLTAAEIIGQVWIANKSFG-----SVPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D YG+S+R V LSTSG+ PMID+L + V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 NLMMDDLGYGISKRKVTLSTSGVAPMIDRLGEVIDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL ++ AC YI+ + ++T EY +L G+ND HA ++I+L+ CKINLI
Sbjct: 244 PLAVVLGACRNYISRLGEKRVLTIEYTLLKGVNDQPEHAEQMIALLAD----IPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F IL +G VT+R RG DI+AACGQL G+++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDILHKAGHNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|205829853|sp|Q15R53.2|RLMN_PSEA6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 376
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 241/356 (67%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFRA Q+ KWI++ GVSDF++MT+L+ +LR+KLK +K
Sbjct: 9 NLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLKAQCEVK 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEIAYQQGASDGTIKFALRLEGGQEVETVWIPDEDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL+V EIIGQ+W R I + N KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 129 GFNRNLSVSEIIGQVW------RVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR+++VPI+KK
Sbjct: 183 MDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPINKK 242
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ S + +T EY ML+GIND+ A EL ++ T CKIN
Sbjct: 243 YPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLAD----TPCKIN 298
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI FAK+L + G+ V +RK RG+DI+AACGQL G ++
Sbjct: 299 LIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQLVGDVV 354
>gi|109899434|ref|YP_662689.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 241/356 (67%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFRA Q+ KWI++ GVSDF++MT+L+ +LR+KLK +K
Sbjct: 13 NLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLKAQCEVK 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 APEIAYQQGASDGTIKFALRLEGGQEVETVWIPDEDRATLCVSSQVGCALECTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL+V EIIGQ+W R I + N KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 133 GFNRNLSVSEIIGQVW------RVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR+++VPI+KK
Sbjct: 187 MDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPINKK 246
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ S + +T EY ML+GIND+ A EL ++ T CKIN
Sbjct: 247 YPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLAD----TPCKIN 302
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI FAK+L + G+ V +RK RG+DI+AACGQL G ++
Sbjct: 303 LIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQLVGDVV 358
>gi|416892165|ref|ZP_11923598.1| hypothetical protein ATCC33389_0690 [Aggregatibacter aphrophilus
ATCC 33389]
gi|347815034|gb|EGY31677.1| hypothetical protein ATCC33389_0690 [Aggregatibacter aphrophilus
ATCC 33389]
Length = 384
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 241/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ LR+KLK+ IK
Sbjct: 19 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKLKSVAEIK 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 193 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 252
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML+ +ND HA +L +++ T CKINL
Sbjct: 253 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLNHVNDHVEHAHQLAEVLKN----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 363
>gi|145640315|ref|ZP_01795899.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
R3021]
gi|145274901|gb|EDK14763.1| hypothetical protein CGSHiR3021_09660 [Haemophilus influenzae
22.4-21]
Length = 383
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|422337012|ref|ZP_16417984.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
aphrophilus F0387]
gi|353345564|gb|EHB89855.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
aphrophilus F0387]
Length = 384
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 240/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ LR+KLK+ IK
Sbjct: 19 NLMNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKKLREKLKSVAEIK 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY
Sbjct: 193 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKY 252
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 253 NIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEVLKN----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 363
>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS195]
gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS223]
gi|373950343|ref|ZP_09610304.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
gi|378709457|ref|YP_005274351.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|386323818|ref|YP_006019935.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|418024003|ref|ZP_12662987.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|205829880|sp|A9KXL1.1|RLMN_SHEB9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807210|sp|B8E9S4.1|RLMN_SHEB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|333817963|gb|AEG10629.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|353536876|gb|EHC06434.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|373886943|gb|EHQ15835.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
Length = 373
Score = 351 bits (901), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 232/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL ++GE PFRA QL KW++ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADMGEKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 67 APEISSFQKSTDGTIKFAINVGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTGQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVPI+KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDELRDILVPINKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDI 351
>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
Length = 380
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/363 (46%), Positives = 237/363 (65%), Gaps = 23/363 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + + GE FRA Q+ KWIH V DF++MTDLS SLR+ LK ++
Sbjct: 8 NLLDLNFEQLKAFFSDRGEKAFRATQVTKWIHHRCVDDFDEMTDLSKSLREMLKRDAEVR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK------------NIIETVFIPEKNRNTLCISTQVGCA 110
AP ++ +Q S DGTRKW+ + N +E VFIPE R TLC+S+QVGC+
Sbjct: 68 APEVVLEQKSADGTRKWVLDLDNQATASRTTPAIGNKVEMVFIPEDGRGTLCVSSQVGCS 127
Query: 111 INCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP 170
++C FCST RQGF RNL+V EIIGQ+W + K + ++TN+VMMGMGEP
Sbjct: 128 LDCSFCSTARQGFSRNLSVAEIIGQVW-------QAKRTLLELGEDERLTNVVMMGMGEP 180
Query: 171 LLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNL 230
L+NY+ I A+ ++ D YGLS+R V +STSG++P ++++ ++ LAVSLHA N++L
Sbjct: 181 LMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIEDTQCALAVSLHAPNDSL 240
Query: 231 RNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK 290
R++LVPI+KK+PL EL+ C R++ P+ +T+EY ML G+ND A EL L++ +
Sbjct: 241 RDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQAHELGKLLKARE 300
Query: 291 ILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLS 350
K+NLIPFN FPNS S +RIK F +IL + G+F RK RG+DI+AACGQL
Sbjct: 301 ----AKVNLIPFNPFPNSGYKRSSEARIKEFKRILNSYGVFTFPRKTRGDDIDAACGQLV 356
Query: 351 GKI 353
GK+
Sbjct: 357 GKV 359
>gi|442610727|ref|ZP_21025437.1| Ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747756|emb|CCQ11499.1| Ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 377
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 238/354 (67%), Gaps = 13/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFRA Q+ KWI+ FGVS+F++MT+L+ LR L IK
Sbjct: 9 NLLDLNREGMRELFASFGEKPFRADQMMKWIYHFGVSNFDEMTNLNKKLRATLHEKCEIK 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q++ DGT K+ ++ +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEIAVKQVASDGTIKYALALEGGQEVETVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R +I + N +R ITN+VMMGMGEPLLN + + A
Sbjct: 129 GFNRNLKVSEIIGQVW------RVATDIGLYNDSTRRPITNVVMMGMGEPLLNLNNVVPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D L + V LA+SLHA NN LR+++VPI+KK
Sbjct: 183 MELMMDDWGFGLSKRRVTLSTSGVVPALDLLKERIDVALAISLHAPNNPLRDEIVPINKK 242
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML GINDT HA EL+ +++ T KINL
Sbjct: 243 YPIEEFLAACRRYIDGSKANKDVTIEYVMLQGINDTTDHAHELVQVLKG----TPSKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S+ S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G +
Sbjct: 299 IPFNPFPGSDYQRSSNSRIDRFSKVLQEAGLTCIVRRTRGDDIDAACGQLVGDV 352
>gi|145638726|ref|ZP_01794335.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
gi|145272321|gb|EDK12229.1| predicted Fe-S-cluster redox enzyme [Haemophilus influenzae PittII]
Length = 383
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + K+LGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKQLGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L ++ T CKINL
Sbjct: 251 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLNN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|410627452|ref|ZP_11338191.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410152944|dbj|GAC24960.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 380
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 240/356 (67%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFRA Q+ KWI++ GVSDF++MT+L+ +LR+KLK +K
Sbjct: 13 NLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQAGVSDFDQMTNLNKALREKLKAQCEVK 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+ +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 APEIAYQQGASDGTIKFALRLEGGQEVETVWIPDADRATLCVSSQVGCALECTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL+V EIIGQ+W R I + N KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 133 GFNRNLSVSEIIGQVW------RVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR+++VPI+KK
Sbjct: 187 MDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPINKK 246
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ S + +T EY ML+GIND+ A EL ++ T CKIN
Sbjct: 247 YPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELAKVLAD----TPCKIN 302
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI FAK+L + G+ V +RK RG+DI+AACGQL G ++
Sbjct: 303 LIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQLVGDVV 358
>gi|386834961|ref|YP_006240278.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201664|gb|AFI46519.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
Length = 394
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 29 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKQVAEIK 88
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 89 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 148
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 149 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 202
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 203 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPINKKY 262
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY++ S + +T EY ML +ND HA +L +++ CKINL
Sbjct: 263 NIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKN----IPCKINL 318
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 373
>gi|359787063|ref|ZP_09290134.1| hypothetical protein MOY_13915 [Halomonas sp. GFAJ-1]
gi|359295713|gb|EHK59976.1| hypothetical protein MOY_13915 [Halomonas sp. GFAJ-1]
Length = 394
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +GE FRA Q+ KWIH+ G DF MT+LS LR+KL I+
Sbjct: 30 NLLGMSREQMEAFFLSIGEKKFRAAQVMKWIHQEGSDDFAAMTNLSKPLREKLAKVAEIR 89
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCSTG 119
P ++ + S DGTRKW+ V+ + +ETV IP +N R TLC+S+QVGC+++C FCSTG
Sbjct: 90 GPSVVYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTG 149
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+WV + + ++ R +TN+VMMGMGEPLLN+ + +
Sbjct: 150 KQGFQRNLTAAEIIGQVWVAQRSVGPRRDT-----ANRPVTNVVMMGMGEPLLNFDNVVP 204
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL+L D+ YGLS+R V LSTSG++PMIDKL E V LA+SLHAS + LRN+LVPI++
Sbjct: 205 AMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASTDELRNELVPINR 264
Query: 240 KYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KY ++ L+ ACHRY++ P + +T EY ++ IND HA +L +L+++ CKIN
Sbjct: 265 KYNIRALLDACHRYLSKCPDNRQVTIEYTLIRDINDQQEHAEQLAALLKE----LPCKIN 320
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FPNS +++ F + L + G T+R RG DI+AACGQL G++
Sbjct: 321 LIPFNPFPNSGYETPSRNQVMRFQQWLYDQGYNATVRVTRGEDIDAACGQLVGRV 375
>gi|52425971|ref|YP_089108.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
succiniciproducens MBEL55E]
gi|81386653|sp|Q65R87.1|RLMN_MANSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|52308023|gb|AAU38523.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 371
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 179/355 (50%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 6 NLMNLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKAVAEIK 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 66 APEIAVEQRSADGTIKWAMQVGDQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 125
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 126 FNRNLTVSEIIGQVW------RASKVIGEFGVTGIRPITNVVMMGMGEPLLNVANVVPAM 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D AYGLS+R V LSTSG++P +D L+ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 180 ELMLDDFAYGLSKRRVTLSTSGVVPALDNLSGMIDVALAISLHAPNDELRDEIVPINKKY 239
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY++ S + +T EY ML +ND+ HA +L +++ T CKINL
Sbjct: 240 NIKMLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSIEHAHQLAEVLKN----TPCKINL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+R+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 296 IPWNPFPQAPYGKSSNTRVDKFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 350
>gi|417854881|ref|ZP_12500147.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
gi|338217251|gb|EGP03142.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
Length = 394
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + + K LGE PFRA QL KWI+ FG +F+ MT+++ LR KLK IK
Sbjct: 29 NLMNLTRQQMREFFKALGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLRDKLKQVAEIK 88
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 89 APEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 148
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 149 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 202
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 203 EIMLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRDEIVPINKKY 262
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +RY++ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 263 NIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLAQVLKN----TPCKINL 318
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 319 IPWNPFPEAPYAKSSNSRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 373
>gi|338997184|ref|ZP_08635885.1| hypothetical protein GME_04267 [Halomonas sp. TD01]
gi|338765781|gb|EGP20712.1| hypothetical protein GME_04267 [Halomonas sp. TD01]
Length = 394
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + ++ +GE FRA QL KWIH+ G DF MT+LS LR+KL I+
Sbjct: 30 NLLGMSREQMEDFFLSIGEKKFRAAQLMKWIHQEGSDDFAAMTNLSKPLREKLARLAEIR 89
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCSTG 119
P ++ + S DGTRKW+ V+ + +ETV IP +N R TLC+S+QVGC+++C FCSTG
Sbjct: 90 GPAVVYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTG 149
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+WV + + ++ R +TN+VMMGMGEPLLN+ + +
Sbjct: 150 KQGFQRNLTAAEIIGQVWVAQRSVGPRRDT-----ANRPVTNVVMMGMGEPLLNFDNVVP 204
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL+L D+ YGLS+R V LSTSG++PMIDKL E V LA+SLHAS + LRN+LVPI++
Sbjct: 205 AMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEIDVSLAISLHASTDELRNELVPINR 264
Query: 240 KYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KY ++ L+ ACHRY++ P + +T EY ++ +ND HA +L +L+++ CKIN
Sbjct: 265 KYNIRALLDACHRYLSKCPDNRQVTIEYTLIRDVNDQQEHAEQLAALLKE----LPCKIN 320
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FPNS +++ F + L + G T+R RG DI+AACGQL G++
Sbjct: 321 LIPFNPFPNSGYEKPSRNQVMRFQQWLYDLGYNATVRVTRGEDIDAACGQLVGRV 375
>gi|309750216|gb|ADO80200.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Haemophilus
influenzae R2866]
Length = 390
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + K+LGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKQLGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L ++ T CKINL
Sbjct: 258 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLNN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|212212364|ref|YP_002303300.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
gi|254807167|sp|B6IZM7.1|RLMN_COXB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|212010774|gb|ACJ18155.1| radical SAM family enzyme [Coxiella burnetii CbuG_Q212]
Length = 370
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 235/352 (66%), Gaps = 15/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+LS + + G+ +RA QL +WIH+ GV+DF+ MTDLS R++L + +++
Sbjct: 6 NLLNLSEPELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVR 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +++S DGT KW+F + N IETVFIP++ R TLC+S+QVGCA+NC FC+TG++
Sbjct: 66 VPELALERVSADGTHKWLFRLADNNKIETVFIPDRKRGTLCVSSQVGCALNCSFCATGKE 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT+ EIIGQ+W+ L+ +ITN+VMMGMGEPLLNY++ + A+
Sbjct: 126 GFNRNLTLAEIIGQVWLAARLLK----------SPYKITNVVMMGMGEPLLNYEAVVAAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ DHAYGLS+ V LSTSG+IP + +L +E PV LAVSLHA N+ LRN L+P++KKY
Sbjct: 176 HLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
L +LI C Y + + +TFEY M+ G+ND I A LI L+ CKINLIP
Sbjct: 236 SLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKRLIRLLAD----VPCKINLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN F + CS S I +F K LM++G +R+ RG+DI ACGQL+G+
Sbjct: 292 FNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLAGQF 343
>gi|260582543|ref|ZP_05850333.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae NT127]
gi|260094354|gb|EEW78252.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae NT127]
Length = 390
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLADVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|91792611|ref|YP_562262.1| ribosomal RNA large subunit methyltransferase N [Shewanella
denitrificans OS217]
gi|123356968|sp|Q12PT7.1|RLMN_SHEDO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91714613|gb|ABE54539.1| conserved hypothetical protein [Shewanella denitrificans OS217]
Length = 373
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 233/355 (65%), Gaps = 14/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KWI+ FGVSDF +MT+++ LR KL I
Sbjct: 7 NLLDLDRKGLRALFTEMGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRSKLAERCVIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 67 APEIASFQKSADGTIKFAINVGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTGQQ 126
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EI+GQ+W V +F + + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLTVSEIVGQIWRVAQFLGF------VKTTGERPITNVVMMGMGEPLLNLKNVIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D + LS+R V LSTSG++P +D L V LAVS+HA N+ LR+ LVP++KK
Sbjct: 181 MDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDSIDVALAVSIHAPNDELRDILVPVNKK 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL E + RYI S R +T EY ML IND+ A EL LM+ T CK+N
Sbjct: 241 YPLAEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAKLMKD----TPCKVN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN +P S S NSRI F+K+LM G V +RK RG+DI+AACGQL+G I
Sbjct: 297 LIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDI 351
>gi|410633396|ref|ZP_11344042.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola arctica
BSs20135]
gi|410147111|dbj|GAC20909.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola arctica
BSs20135]
Length = 381
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 176/356 (49%), Positives = 241/356 (67%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + E+GE PFRA+Q+ KWI++ GV+DF +MT+L+ +LR KL+ IK
Sbjct: 14 NLLDLTRDGLRVFFNEMGEKPFRAEQIMKWIYQQGVADFEQMTNLNKALRTKLQAKCEIK 73
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+ +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 74 APEIAYQQNASDGTIKFALKLEGGQEVETVWIPDGDRATLCVSSQVGCALECTFCSTAQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R I +N+ KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 134 GFNRNLKVSEIIGQVW------RVATTIGLNNDTAKRPITNVVMMGMGEPLLNVKNVVPA 187
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D A+GLS+R V LSTSG++P +D L + V LA+S+HA +N LR+ LVP++KK
Sbjct: 188 MELMMDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISIHAPDNALRDVLVPVNKK 247
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL+ + + RY+ S + +T EY ML+GIND+ A L +M T CKIN
Sbjct: 248 YPLEVFLASVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVMAD----TPCKIN 303
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S CS NSRI FAK+LM G+ V +R+ RG DI+AACGQL G+++
Sbjct: 304 LIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGLIVVVRRTRGEDIDAACGQLVGEVV 359
>gi|398845270|ref|ZP_10602311.1| 23S rRNA methyltransferase [Pseudomonas sp. GM84]
gi|398253722|gb|EJN38838.1| 23S rRNA methyltransferase [Pseudomonas sp. GM84]
Length = 381
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 237/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + +GE FRA Q+ KWIH FGV DF MT++ +LR+KL+ I+
Sbjct: 9 NLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFAAMTNVGKALREKLEAVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S+ IS DGTRKW+ V + +ETV+IP +R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 69 PPEVVSEDISADGTRKWVIRVASGSCVETVYIPTDDRGTLCVSSQAGCALDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT E+IGQ+W L + + ++ R ITN+VMMGMGEPLLN+ + I A+
Sbjct: 129 GFNSNLTAAEVIGQVW-----LANKSFGTVPAKIDRAITNVVMMGMGEPLLNFDNVIAAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K+++ D YG+S+R V LSTSG++PMID+LA+ V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 184 KIMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDELRNQLVPINKKY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLK L+ +C Y+ T + ++T EY +L +ND HA ++I L+R CKINLI
Sbjct: 244 PLKVLLESCMGYMATLGGKRVLTVEYTLLKDVNDQPEHAAQMIELLRD----VPCKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP+S N+ I+ F +L + G VT R RG DI+AACGQL G++
Sbjct: 300 PFNPFPHSGYERPSNNAIRRFQDLLHHGGFNVTTRTTRGEDIDAACGQLVGQV 352
>gi|16272313|ref|NP_438526.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae Rd KW20]
gi|260580572|ref|ZP_05848400.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae RdAW]
gi|1175973|sp|P44665.1|RLMN_HAEIN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|1573332|gb|AAC22023.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092914|gb|EEW76849.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
influenzae RdAW]
Length = 390
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 24 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 258 NIKTLIDSVNRYLNVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 368
>gi|365920703|ref|ZP_09445025.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
gi|364577686|gb|EHM54940.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
Length = 367
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 171/353 (48%), Positives = 237/353 (67%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL D + E GE PFRA+QL KWI+ V+DF+ MTDLS LR+KLK + ++
Sbjct: 6 NLFDFDREALTAWFAEQGEKPFRARQLMKWIYHERVTDFDAMTDLSKPLREKLKATAELR 65
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P +++D+++ DGTRKW+F N IETVFIPE +R TLCIS+Q GCA+ C FCST +
Sbjct: 66 FPTVIADRLASDGTRKWVFRYDCGNSIETVFIPEDDRGTLCISSQAGCALACPFCSTAHE 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEII Q+W+ + L +++ R +TN+V+MGMGEPL+N+ + + A
Sbjct: 126 GFNRNLTSGEIIVQVWLAKEMLNCDRH-----GNNRVVTNVVLMGMGEPLVNFNNVLPAT 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D+A+GLS+R V LSTSGI+P I L + + LAVSLHA N+ LRN++VP++ +Y
Sbjct: 181 RLMMDDYAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLHAPNDELRNQIVPVNARY 240
Query: 242 PLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
L L+ ACH+Y+ ++ +H +T+EY ML G+ND+ HA +L+ L+R KINLI
Sbjct: 241 GLDALLDACHQYVQHNGQHGGVTWEYVMLRGVNDSLEHARQLVELLRG----IPGKINLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S CSK I F + L +G TIRK RG DI+AACGQL G++
Sbjct: 297 PFNAFPGSRFECSKRGDILAFQRYLTENGYVATIRKTRGEDIDAACGQLVGQV 349
>gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
Length = 383
Score = 350 bits (899), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI++KY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINRKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLAEVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|145632612|ref|ZP_01788346.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
gi|144986807|gb|EDJ93359.1| hypothetical protein CGSHi3655_02319 [Haemophilus influenzae 3655]
Length = 383
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 178/355 (50%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + KELGE PFRA QL KWI+ FG +F+ M +++ LR+KLK IK
Sbjct: 17 NLMDLTRQQMREFFKELGEKPFRADQLVKWIYHFGEDNFDNMININKKLREKLKAVAEIK 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 77 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 136
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 137 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VPI+KKY
Sbjct: 191 EIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPINKKY 250
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + +RY+T S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 251 NIKMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLADVLKN----TPCKINL 306
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM V IRK RG+DI+AACGQL+G ++
Sbjct: 307 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYDFTVIIRKTRGDDIDAACGQLAGDVI 361
>gi|443468238|ref|ZP_21058468.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
pseudoalcaligenes KF707]
gi|442897355|gb|ELS24297.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
pseudoalcaligenes KF707]
Length = 375
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M+++ +LR KLK S I+
Sbjct: 2 NLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNIGKALRDKLKASAEIR 61
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+Q
Sbjct: 62 GPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQ 121
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +LT E+IGQ+W+ I ++ R ITN+VMMGMGEPLLN+ + + A+
Sbjct: 122 GFNSDLTAAEVIGQVWIANKSFG-----TIPAKIDRAITNVVMMGMGEPLLNFDNVVAAM 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R V LSTSG+ PMIDKL + V LA+SLHA N+ LRN+LVPI+KKY
Sbjct: 177 NIMMDDLGYGISKRKVTLSTSGVAPMIDKLGEVIDVSLALSLHAPNDPLRNQLVPINKKY 236
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL ++ AC RYI+ + ++T EY +L +ND HA ++I L+++ CKINLI
Sbjct: 237 PLSVVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAAQMIELLKE----FPCKINLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP+S N+ I+ F +L +G VT+R RG+DI+AACGQL G+++
Sbjct: 293 PFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGDDIDAACGQLVGQVM 346
>gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi
ATCC 51908]
gi|205829887|sp|B1KKI9.1|RLMN_SHEWM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908]
Length = 373
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 235/355 (66%), Gaps = 14/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KWI+ FGVSDF++M +++ +LR KL I
Sbjct: 7 NLLDLDRKGLRALFTEMGEKPFRADQLMKWIYHFGVSDFDEMNNINKALRAKLNARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSFQKSEDGTIKFAINVGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EIIGQ+W V +F + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLTVSEIIGQVWRVADFIGF------VKETGERPITNVVMMGMGEPLLNLKNVIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D + LS+R V +STSG++P +DKL V LAVS+HA N+ LR+ LVP++KK
Sbjct: 181 MDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIHAPNDELRDVLVPVNKK 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL+E + RYI S R +T EY ML IND+ A EL LM+ T CKIN
Sbjct: 241 YPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 297 LIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|407803612|ref|ZP_11150446.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
gi|407022456|gb|EKE34209.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
Length = 382
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 238/355 (67%), Gaps = 11/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL S + +C ++GE FRA+QL KWIH V DF +MTDL + R +L I+
Sbjct: 8 NLLGFSYAEMEAFCLDIGEKKFRAQQLLKWIHHHQVDDFEQMTDLGKAFRARLAEVAEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ + IS DGTRKW+ V +ETVFIP+ R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 68 APIVLQENISRDGTRKWVLQVDGGGAVETVFIPDGRRGTLCVSSQVGCSVDCSFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+L+ EIIGQ+W+ +N+ G+ +TN+VMMGMGEPLLNY + + A+
Sbjct: 128 GFQRDLSSAEIIGQVWLASKTFGPRRNL-----GEHPVTNVVMMGMGEPLLNYDNVVRAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+S+R + LSTSG++PMID+L+Q+ V LA+SLHA N+ LR+ LVP+++KY
Sbjct: 183 RIMKDDLGYGISKRRITLSTSGVVPMIDRLSQDLDVSLAISLHAPNDALRDVLVPLNRKY 242
Query: 242 PLKELILACHRYIT-YSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+EL+ AC RY RH IT EY +L GIND HA +L+ L+R N++ K+NL
Sbjct: 243 PLEELLAACQRYSDGVEHRHKSITMEYVLLKGINDQPEHARQLVKLLR-NRM--PIKLNL 299
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S + F K L +G+ TIR RG+DI+AACGQL G+++
Sbjct: 300 IPFNPFPHSGYERPAKPDVLAFHKYLNENGLMTTIRTTRGDDIDAACGQLVGEVM 354
>gi|448748166|ref|ZP_21729811.1| Ribosomal RNA large subunit methyltransferase RlmN [Halomonas
titanicae BH1]
gi|445564287|gb|ELY20411.1| Ribosomal RNA large subunit methyltransferase RlmN [Halomonas
titanicae BH1]
Length = 394
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +GE FRA QL KWIH+ G DF MT+LS +LR+KL I+
Sbjct: 30 NLLGMSREQMEAFFLSIGEKKFRAAQLMKWIHQEGSDDFAAMTNLSKALREKLARLAEIR 89
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCSTG 119
P ++ + S DGTRKW+ V+ + +ETV IP +N R TLC+S+QVGC+++C FCSTG
Sbjct: 90 GPGVIYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTG 149
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+WV + + ++ R +TN+VMMGMGEPLLN+ + +
Sbjct: 150 KQGFQRNLTAAEIIGQVWVAQRSVGPRRDT-----ANRPVTNVVMMGMGEPLLNFDNVVP 204
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL+L D+ YGLS+R V LSTSG++PMIDKL E V LA+SLHAS + LRN+LVPI++
Sbjct: 205 AMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASTDELRNELVPINR 264
Query: 240 KYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KY ++ L+ ACHRY++ P + +T EY ++ +ND HA +L +L+++ CKIN
Sbjct: 265 KYNIRALLDACHRYLSKCPDNRQVTIEYTLIKDVNDQQEHAEQLAALLKE----LPCKIN 320
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FPNS +++ F + L + G T+R RG DI+AACGQL G++
Sbjct: 321 LIPFNPFPNSGYEKPSRNQVMRFQQWLYDLGYNATVRTTRGEDIDAACGQLVGRV 375
>gi|409425608|ref|ZP_11260192.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Pseudomonas sp. HYS]
Length = 381
Score = 350 bits (898), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 238/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH FGV DF+ MT++ +LR+KLK I
Sbjct: 8 TNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S+ IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSEDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF NLT E+IGQ+W+ I + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSNLTAAEVIGQVWIANKSFG-----SIPATIDRAITNVVMMGMGEPLLNFDNVVAA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++PMI++LA+ V LA+SLHA N+ LRN+LVP++KK
Sbjct: 183 MHLMMDDLGYGISKRRVTLSTSGVVPMIEELAKHIDVSLALSLHAPNDALRNELVPLNKK 242
Query: 241 YPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPLK L+ AC Y++ + ++T EY +L +ND HA+E+ L++ CKINL
Sbjct: 243 YPLKVLLEACMNYMSQLGEKRVLTIEYTLLKDVNDKLEHAVEMAELLKN----VPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F L ++G VT+R RG DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNAIRRFQDHLHHAGYNVTVRTTRGEDIDAACGQLVGQVM 353
>gi|325915372|ref|ZP_08177689.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
35937]
gi|325538419|gb|EGD10098.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas vesicatoria ATCC
35937]
Length = 401
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 243/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFAETLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN +ETV+IP+K+R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAVETVYIPDKSRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N++LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSAESDVSLAVSLHAANDSLRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|387814569|ref|YP_005430055.1| Fe-S protein [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|205829787|sp|A1TZP7.1|RLMN_MARAV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
gi|381339585|emb|CCG95632.1| putative Fe-S containing enzyme (yfgB) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 369
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 238/353 (67%), Gaps = 12/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + K + + LGE FRA+Q+ +W+H+ GV DF++MT++S SLR++LK I+
Sbjct: 9 NLLGMPKAKLEAFFETLGEKRFRAQQVLQWMHQRGVDDFDQMTNMSKSLREQLKEVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ D+ S DGTRKW+ + N +ETV IP+ R TLC+S+Q+GC+++C FCSTG++
Sbjct: 69 GPEVVYDETSKDGTRKWVMRMDNGNSVETVLIPDGERGTLCVSSQIGCSLDCTFCSTGKR 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQ+WV R + + R ITN+VMMGMGEPLLN+++ + A+
Sbjct: 129 GFNRNLTAAEIIGQVWVA-----RRAFMPFDPN-DRPITNVVMMGMGEPLLNFENVVDAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D AYG+S+R V LSTSG++P +D+L + V LA+SLHA N+ LRN+LVP++KKY
Sbjct: 183 NLMMEDLAYGISKRRVTLSTSGVVPALDRLGEVTDVSLAISLHAPNDELRNQLVPLNKKY 242
Query: 242 PLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+ EL+ A RY++ P + T EY ++ G+ND HA EL+ L++ CKINLI
Sbjct: 243 PIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVVLLKG----LPCKINLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S+ + + F +L +G TIR RG+DI+AACGQL G++
Sbjct: 299 PFNPFPESDFRRPSMNATRRFQTVLNEAGYVTTIRTTRGDDIDAACGQLVGRV 351
>gi|357417728|ref|YP_004930748.1| hypothetical protein DSC_10315 [Pseudoxanthomonas spadix BD-a59]
gi|355335306|gb|AER56707.1| hypothetical protein DSC_10315 [Pseudoxanthomonas spadix BD-a59]
Length = 403
Score = 350 bits (897), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 170/361 (47%), Positives = 246/361 (68%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL L + ++ LGE +RA Q+ KWIH V+DF++MTDL +LR KL+ +
Sbjct: 26 NLLDLDRLGLERFFEDTLGEKRYRAHQVMKWIHHRYVTDFDEMTDLGKALRAKLQQHAEV 85
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP++ R TLC+S+QVGCA+NC FCST
Sbjct: 86 IVPNIVFDKPSTDGTHKWLLSMGADGKNAIETVYIPDRTRGTLCVSSQVGCALNCQFCST 145
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNL+ EIIGQ+WV L N+ R++TN+VMMGMGEPL N+ + +
Sbjct: 146 ATQGFNRNLSTAEIIGQVWVAARHL---GNVPAQI---RRLTNVVMMGMGEPLANFDNVV 199
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LST+G++PMID+L+ E V LAVSLHA+++ LR++LVP++
Sbjct: 200 RAMSVMRDDLGYGLASKRVTLSTAGMVPMIDRLSSESDVSLAVSLHAADDALRSELVPLN 259
Query: 239 KKYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
+KYP+++L+ AC RY+ SPR ITFEY ++ G+ND HA L LMR+ N++ +
Sbjct: 260 RKYPIEQLMAACARYLKASPRRDSITFEYTLMKGVNDQPEHARALARLMRQFGNQMQSRE 319
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S+ I+ F KIL++ + +R+ RG+DI+AACGQL G++
Sbjct: 320 AGKVNLIPFNPFPGTRYQRSEEGDIRAFQKILLDQQVLTMVRRTRGDDIDAACGQLKGQV 379
Query: 354 L 354
+
Sbjct: 380 M 380
>gi|294140143|ref|YP_003556121.1| hypothetical protein SVI_1372 [Shewanella violacea DSS12]
gi|293326612|dbj|BAJ01343.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 379
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 186/355 (52%), Positives = 232/355 (65%), Gaps = 14/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL ++GE PFRA QL KWI+ FGVSDF MT+++ LR KL I
Sbjct: 13 NLLDLDRKGLRALFTDMGEKPFRADQLMKWIYHFGVSDFELMTNINKGLRAKLAARCEIT 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 APQISSYQKSEDGTIKFAINVGDGQEVETVYIPEGDRATLCVSSQVGCALECTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EIIGQ+W V +F I G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 133 GFNRNLTVSEIIGQVWRVADFIGF------IKDTGERPITNVVMMGMGEPLLNLKNVIPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D + LS+R V LSTSG++P +D L V LAVS+HA+N+ LR+ LVP++KK
Sbjct: 187 MDIMLDDFGFSLSKRRVTLSTSGVVPALDILGDAIDVALAVSIHAANDELRDVLVPVNKK 246
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YPL+E + A RYI S R +T EY ML IND+ A EL LM+ T CKIN
Sbjct: 247 YPLEEFLAAIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKIN 302
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN +P S S NSRI F+K+LM G V +RK RG+DI+AACGQL+G I
Sbjct: 303 LIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDI 357
>gi|424794311|ref|ZP_18220295.1| Radical SAM superfamily protein, probable [Xanthomonas translucens
pv. graminis ART-Xtg29]
gi|422796002|gb|EKU24591.1| Radical SAM superfamily protein, probable [Xanthomonas translucens
pv. graminis ART-Xtg29]
Length = 401
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE +RA Q+ KWIH V+DF++MTDL +LR KL+ +
Sbjct: 24 NLLDLDREGLERFFAESLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLQQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGCA+NC FCST
Sbjct: 84 VVPNIVFDKPSTDGTHKWLLAMGSDGKNAIETVYIPDKGRGTLCVSSQVGCALNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNL+ EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLSTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+++ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAADDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ AC RY+ + R +TFEY ++ GIND HA +L LMR+ +
Sbjct: 258 KKYPVAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQAAN 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTCYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
L
Sbjct: 378 L 378
>gi|331005925|ref|ZP_08329273.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
IMCC1989]
gi|330420281|gb|EGG94599.1| transcriptional regulator, Crp/Fnr family [gamma proteobacterium
IMCC1989]
Length = 403
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 239/354 (67%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS K + + +GE FRA Q+QKWIH+ GV DF+ M+++S LR+KL I+
Sbjct: 21 NLLGLSTSKLTAFFESIGEKKFRAIQVQKWIHQNGVDDFSAMSNISKPLREKLSRIAEIR 80
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ S DGTRK++ V N++ETVFIP+ +R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 81 APEVIKQLDSVDGTRKFLIKVSGDNVVETVFIPDGDRGTLCVSSQVGCSLDCSFCATGKQ 140
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LT EIIGQ+W+ + +++ + R +TN+VMMGMGEPLLN+ + + ++
Sbjct: 141 GFNRDLTAAEIIGQVWIAA-----KSYGQLDPKADRTVTNVVMMGMGEPLLNFDNVVDSM 195
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+AYGLS+R V LSTSG++P +D+L + C V LAVSLHA N+ LRN+LVPI+KKY
Sbjct: 196 NLMMDDNAYGLSKRRVTLSTSGVVPALDRLGEHCDVSLAVSLHAPNDALRNELVPINKKY 255
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ L+ + RYI P R +T EY ++ +ND HA EL L+R+ KINL
Sbjct: 256 PIAVLLASAKRYIDGLPDNRRKMTIEYTLIDQVNDRPHHAYELAELLRE----IPVKINL 311
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN F N N+ ++ F IL+N G T+R RG+DI+AACGQL+G I
Sbjct: 312 IPFNPFDLVNYKRVSNNALRNFQNILINEGFTTTVRTTRGDDIDAACGQLAGDI 365
>gi|352106567|ref|ZP_08961510.1| hypothetical protein HAL1_19551 [Halomonas sp. HAL1]
gi|350597610|gb|EHA13738.1| hypothetical protein HAL1_19551 [Halomonas sp. HAL1]
Length = 399
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + ++ +GE FRA QL KWIH+ G DF MT+LS LR+KL I+
Sbjct: 35 NLLGMSREQMEDFFLSIGEKKFRAAQLMKWIHQEGSDDFAAMTNLSKPLREKLARVAEIR 94
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCSTG 119
P ++ + S DGTRKW+ V+ + +ETV IP +N R TLC+S+QVGC+++C FCSTG
Sbjct: 95 GPAVIYEGTSSDGTRKWVLEVEDGSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTG 154
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+WV + + ++ R +TN+VMMGMGEPLLN+ + +
Sbjct: 155 KQGFQRNLTAAEIIGQVWVAQRSVGPRRDT-----ANRPVTNVVMMGMGEPLLNFDNVVP 209
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL+L D+ YGLS+R V LSTSG++PMIDKL E V LA+SLHASN+ LRN LVPI++
Sbjct: 210 AMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASNDELRNTLVPINR 269
Query: 240 KYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KY ++ L+ ACHRY+ P + +T EY ++ IND HA +L +L+++ CKIN
Sbjct: 270 KYNIRALLDACHRYLAKCPDNRQVTIEYTLIKDINDQQEHAEQLAALLKE----LPCKIN 325
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FPNS +++ F + L + T+R RG DI+AACGQL G++
Sbjct: 326 LIPFNPFPNSGYEKPSRNQVMRFQQWLYDLNYNATVRTTRGEDIDAACGQLVGRV 380
>gi|153873084|ref|ZP_02001783.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152070449|gb|EDN68216.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 358
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 172/350 (49%), Positives = 232/350 (66%), Gaps = 11/350 (3%)
Query: 5 LDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAP 64
+DL P + +ELGE PFRA Q+ KWIH+ V DF+ MT+LS +LR++LK I P
Sbjct: 1 MDLPP-----FFEELGEKPFRATQVMKWIHQQAVLDFDAMTNLSKTLRQRLKEIACISLP 55
Query: 65 HIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGF 123
+ QIS D TRKW+ + N IE VFIPE R TLCIS+Q+GCA++C FC+T +QGF
Sbjct: 56 QVYKTQISQDDTRKWLLQLDNGNSIEMVFIPEDGRGTLCISSQIGCALDCSFCATAQQGF 115
Query: 124 VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKL 183
RNL EII QLW+ E +L K+ + + +R I+N+VMMGMGEPL N + I A+K+
Sbjct: 116 NRNLNTAEIIAQLWLAEHQLCSTKDDRPKNY-QRTISNVVMMGMGEPLTNLNNVIKAIKI 174
Query: 184 ILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPL 243
+ D YGLS + + LST+GI+P +L ++CPV LAVSLHA ++ LR++LVPI+KKYP+
Sbjct: 175 MKDDFGYGLSWQRITLSTAGIVPAFKRLKEQCPVSLAVSLHAPDDALRDQLVPINKKYPI 234
Query: 244 KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN 303
EL+ AC Y+ PR ITFEY ML IND+ HA L+ L++ K+NLIPFN
Sbjct: 235 NELLAACRAYVKGEPRRTITFEYIMLKNINDSQSHAHALVKLIQG----IPAKVNLIPFN 290
Query: 304 CFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FP++ S I F IL+ +G+ RK RG+DI+AACGQL+GK+
Sbjct: 291 TFPDTPYQSSSIKTIDDFRDILLKAGLITITRKTRGDDIDAACGQLAGKV 340
>gi|345428624|ref|YP_004821740.1| hypothetical protein PARA_00390 [Haemophilus parainfluenzae T3T1]
gi|419802385|ref|ZP_14327572.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK262]
gi|419846048|ref|ZP_14369306.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK2019]
gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
gi|385190247|gb|EIF37695.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK262]
gi|386414678|gb|EIJ29230.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK2019]
Length = 382
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + ELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 16 NLMDLTRQQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 76 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 136 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 189
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L + V LA+SLHA N+ LR++++PI+KKY
Sbjct: 190 EIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAISLHAPNDELRDEIMPINKKY 249
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + HRY+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 250 NIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAQVLKN----TPCKINL 305
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 306 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 360
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4.1|RLMN_LEGPL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 349 bits (896), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 229/352 (65%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + L+ E PFRA+QL +WIH+ G+ DF +MT+L LR KL I
Sbjct: 7 NLLNYNYLQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACID 66
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++ Q S DGT KW+ ++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +Q
Sbjct: 67 LPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+W+ +L + ++ITN+VMMGMGEPLLN+ + + A+
Sbjct: 127 GFNRNLSTAEIIGQVWLAARELSDN-----DGTHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D AYGLS+R V LSTSG+IP +++L + PV LAVSLHA + LRN+LVPI+KKY
Sbjct: 182 NIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSPVALAVSLHAPTDELRNELVPINKKY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +LI C RY PR +TFEY ML G+ND HA +LI L+ K+NLIP
Sbjct: 242 PLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHN----VPAKVNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S I F LM GI RK RG+DI+AACGQL+G++
Sbjct: 298 FNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|416106782|ref|ZP_11590031.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348005984|gb|EGY46450.1| cfr family radical SAM enzyme [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 364
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 239/353 (67%), Gaps = 13/353 (3%)
Query: 5 LDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAP 64
++L+ + + ELGE PFRA QL KWI+ FG +F+ MT+L+ +LR+KLK IKAP
Sbjct: 1 MNLTRAQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNLNKALREKLKTMAEIKAP 60
Query: 65 HIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFV 124
+ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF
Sbjct: 61 EVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRTTLCVSSQVGCALACTFCSTAQQGFN 120
Query: 125 RNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKL 183
RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+++
Sbjct: 121 RNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEI 174
Query: 184 ILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPL 243
+L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY +
Sbjct: 175 MLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNI 234
Query: 244 KELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKINLIP
Sbjct: 235 KTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKINLIP 290
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 291 WNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 343
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1.1|RLMN_HAHCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 169/359 (47%), Positives = 243/359 (67%), Gaps = 23/359 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL ++ + + LGE FRA QL KW++ GVSDF+ MT++S +LR+KLK +
Sbjct: 9 NLLGMNRSDLETFFESLGEKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLKEVAEVS 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ + IS DGTRKW+ + N IETV+IP+ R TLC+S+Q+GC+++C FCSTG+Q
Sbjct: 69 VPEVIYEDISADGTRKWVMRLAGGNSIETVYIPDNGRGTLCVSSQIGCSLDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVT-----EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176
GF RNL+ EIIGQLW+ ++ L +E R +TNIV MGMGEPLLN+ +
Sbjct: 129 GFNRNLSSAEIIGQLWIAARSFGDYDLSKE----------RYVTNIVFMGMGEPLLNFDN 178
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ A +++ D +G+S+R + +STSG++P +DKL V LA+SLHA NN+LR+ LVP
Sbjct: 179 VVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDVTDVSLAISLHAPNNSLRDVLVP 238
Query: 237 ISKKYPLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
++KKYP++EL+ ACHRY+ S + IT EY ++ G+ND++ HA EL L+R C
Sbjct: 239 VNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRDLLRD----LPC 294
Query: 296 KINLIPFNCFPNSNLI-CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
KINLIPFN FPNS S+N+ ++ F K+L ++G T+R RG+DI+AACGQL G++
Sbjct: 295 KINLIPFNPFPNSGYERPSRNATLR-FQKVLSDAGYVATVRTTRGDDIDAACGQLVGRV 352
>gi|359393966|ref|ZP_09187019.1| Ribosomal RNA large subunit methyltransferase N [Halomonas
boliviensis LC1]
gi|357971213|gb|EHJ93658.1| Ribosomal RNA large subunit methyltransferase N [Halomonas
boliviensis LC1]
Length = 399
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +GE FRA QL KWIH+ G DF MT+LS LR+KL I+
Sbjct: 35 NLLGMSREQMEAFFLSIGEKKFRAAQLMKWIHQEGSDDFAAMTNLSKPLREKLARLAEIR 94
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKN--RNTLCISTQVGCAINCIFCSTG 119
P ++ + S DGTRKW+ V+ + +ETV IP +N R TLC+S+QVGC+++C FCSTG
Sbjct: 95 GPGVIYEGTSSDGTRKWVLEVEDSSYVETVLIPAENGKRRTLCVSSQVGCSLDCSFCSTG 154
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT EIIGQ+WV + + ++ R +TN+VMMGMGEPLLN+ + +
Sbjct: 155 KQGFQRNLTAAEIIGQVWVAQRSVGPRRDT-----ANRPVTNVVMMGMGEPLLNFDNVVP 209
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+KL+L D+ YGLS+R V LSTSG++PMIDKL E V LA+SLHAS + LRN+LVPI++
Sbjct: 210 AMKLMLDDNGYGLSKRRVTLSTSGVVPMIDKLGDEMDVSLAISLHASTDELRNELVPINR 269
Query: 240 KYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KY ++ L+ ACHRY+ P + +T EY ++ +ND HA +L +L+++ CKIN
Sbjct: 270 KYNIRALLDACHRYLAKCPDNRQVTIEYTLIKDVNDQQEHAEQLAALLKE----LPCKIN 325
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FPNS +++ F + L + G T+R RG DI+AACGQL G++
Sbjct: 326 LIPFNPFPNSGYEKPSRNQVMRFQQWLYDLGYNATVRTTRGEDIDAACGQLVGRV 380
>gi|126640570|ref|YP_001083554.1| Fe-S-cluster redox enzyme [Acinetobacter baumannii ATCC 17978]
Length = 376
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 175/358 (48%), Positives = 244/358 (68%), Gaps = 18/358 (5%)
Query: 7 LSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHI 66
+S + + +++GE FRA Q+ KWIH++ V+DF +MT++S LR KL+ IKAP +
Sbjct: 1 MSRAELEKFFEDIGEKKFRAGQVMKWIHQYFVTDFAEMTNISGKLRAKLEQICEIKAPEV 60
Query: 67 MSDQISFDGTRKWIFHVKK---NIIETVFIPEKN----RNTLCISTQVGCAINCIFCSTG 119
+ S DGTRKW+F V + +++ETV IP ++ R TLCIS+QVGCA++C FCSTG
Sbjct: 61 VHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGSRKTLCISSQVGCALDCSFCSTG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF R+LT EIIGQLW+ + E + ++ +R +TN+VMMGMGEPLLNY + +
Sbjct: 121 KQGFQRDLTPDEIIGQLWMANYSYMEEVPV---AERERSVTNVVMMGMGEPLLNYDAVLS 177
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
++ ++L D AYG+S+R V LSTSG++P ID+LA++ V LA+SLHA N+ LRN+LVPI+K
Sbjct: 178 SMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDIDVALAISLHAPNDELRNELVPINK 237
Query: 240 KYPLKELILACHRYIT----YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
KYPL +LI AC RYI S R +T EY ML G+ND HA +L+ L+
Sbjct: 238 KYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLEGVNDQPEHAQQLLKLL----KNLPS 293
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
KINLIPFN FP++ S +RI F K L ++G TIR+ RG+DI+AACGQL G++
Sbjct: 294 KINLIPFNPFPHAPYGRSSRNRIISFQKTLSDAGFVCTIRQTRGDDIDAACGQLVGQV 351
>gi|71732121|gb|EAO34177.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
Length = 401
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 243/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+L + ++ LGE +RA Q+ KWIH V+DF +MTD+ +LR +L+ +
Sbjct: 24 NLLELDREGLERFFEDVLGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQACAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ P ++ D+ S DGT KW+ + +KN IETV+IP+K R TLC+S+Q+GC +NC FCST
Sbjct: 84 RVPRVVFDKHSVDGTHKWLLAMGADRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGLS + V LSTSG++PMID+L+ E V LAVSLHA N+ LR +LVP++
Sbjct: 198 RAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ +C RY++ +P R +TFEY ++ G+ND HA EL LMR+ ++
Sbjct: 258 KKYPIVELMASCERYLSVNPKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKG 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S I+ F KIL+++ I +R+ RG+DI+AACGQL G++
Sbjct: 318 AAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 V 378
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|416157002|ref|ZP_11604848.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|416225542|ref|ZP_11626890.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|416231838|ref|ZP_11628904.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|416235984|ref|ZP_11630379.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|416242273|ref|ZP_11633309.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|416246881|ref|ZP_11635250.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|416249828|ref|ZP_11636925.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|416255365|ref|ZP_11639202.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|421780199|ref|ZP_16216689.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis BBH18]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|407812993|gb|EKF83777.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
Length = 395
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 242/360 (67%), Gaps = 16/360 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + LGE FRA Q+ KWI++FGV+DF +MT++S L+ KL +
Sbjct: 21 NLLGMSKDELSAFFVSLGEKSFRATQVMKWIYQFGVTDFFEMTNISKKLQHKLHEVACVV 80
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIFC 116
P + + S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C FC
Sbjct: 81 PPTVKYKEFSQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCISSQVGCALDCSFC 140
Query: 117 STGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176
STG+QGF R+LT EIIGQLWV +N+ + R +TN+VMMGMGEPLLNY
Sbjct: 141 STGKQGFERDLTPSEIIGQLWVANQSYM--ENVPPTERENR-VTNVVMMGMGEPLLNYDP 197
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ ++ L+L DHA+GLS+R V LSTSG++P + LA++ V LA+SLHA N+ LRN+LVP
Sbjct: 198 VVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDELRNELVP 257
Query: 237 ISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
I+KKYPLK+LI A Y+ +PRH IT EY ML G+ND+D HA +L+ L++
Sbjct: 258 INKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKD----L 313
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
KINLIPFN FP++ S N+RI F+ IL +G TIR+ RG+DI+AACGQL G++
Sbjct: 314 PSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAACGQLVGQV 373
>gi|346724944|ref|YP_004851613.1| Fe-S-cluster redox enzyme [Xanthomonas axonopodis pv. citrumelo F1]
gi|346649691|gb|AEO42315.1| Fe-S-cluster redox enzyme [Xanthomonas axonopodis pv. citrumelo F1]
Length = 393
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 16 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 75
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 76 LVPNVVFDKPSADGTHKWLLAMGADGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 135
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 136 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 189
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 190 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDTLRESLVPLN 249
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 250 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 309
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 310 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 369
Query: 354 L 354
+
Sbjct: 370 M 370
>gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
Length = 382
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+DL+ + + ELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 16 NLMDLTRQQMREFFAELGEKPFRADQLVKWIYHFGEDNFDNMTNINKKLREKLKAVAEIK 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 76 APEVAVEQRSADGTIKWAMQVGEQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 136 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAM 189
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L + V LA+SLHA N+ LR++++PI+KKY
Sbjct: 190 EIMLDDFAYGLSKRRVTLSTSGVVPALDMLRDKIDVALAISLHAPNDELRDEIMPINKKY 249
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ L+ + HRY+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 250 NIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAKVLKN----TPCKINL 305
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 306 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 360
>gi|126175195|ref|YP_001051344.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS155]
gi|386341948|ref|YP_006038314.1| radical SAM enzyme, Cfr family [Shewanella baltica OS117]
gi|205829878|sp|A3D6W2.1|RLMN_SHEB5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|125998400|gb|ABN62475.1| radical SAM enzyme, Cfr family [Shewanella baltica OS155]
gi|334864349|gb|AEH14820.1| radical SAM enzyme, Cfr family [Shewanella baltica OS117]
Length = 373
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 231/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL ++GE PFRA QL KW++ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADMGEKPFRADQLMKWLYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 67 APEISSFQKSTDGTIKFAINVGQGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTGQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K+ G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKDT-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVPI+KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDELRDILVPINKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
L E + RYI S R +T EY ML IND+ A EL LM+ T CKINL
Sbjct: 242 QLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDI 351
>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
129PT]
gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
Length = 365
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 238/353 (67%), Gaps = 13/353 (3%)
Query: 5 LDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAP 64
++L+ + + +ELGE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IKAP
Sbjct: 1 MNLTRQQMRAFFQELGEKPFRADQLVKWIYHFGEDNFDHMTNINKKLREKLKTVAEIKAP 60
Query: 65 HIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFV 124
I +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF
Sbjct: 61 EIAVEQRSADGTIKWAMQVGDQQVETVYIPETDRATLCVSSQVGCALACTFCSTAQQGFN 120
Query: 125 RNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKL 183
RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+++
Sbjct: 121 RNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEI 174
Query: 184 ILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPL 243
+L D AYGLS+R V LSTSG++P +DKL++ V LA+SLHA N+ LRN++VPI+KKY +
Sbjct: 175 MLDDFAYGLSKRRVTLSTSGVVPALDKLSEMIDVALAISLHAPNDELRNEIVPINKKYNI 234
Query: 244 KELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
K L+ + +RY+ S + +T EY ML IND HA +L +++ T CKINLIP
Sbjct: 235 KMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLAEVLKN----TPCKINLIP 290
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
+N FP++ S N+RI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 291 WNPFPDAPYAKSSNTRIDRFQKTLMEYGFTVILRKTRGDDIDAACGQLAGDVI 343
>gi|433676282|ref|ZP_20508414.1| ribosomal RNA large subunit methyltransferase N [Xanthomonas
translucens pv. translucens DSM 18974]
gi|440731375|ref|ZP_20911398.1| hypothetical protein A989_08379 [Xanthomonas translucens DAR61454]
gi|430818583|emb|CCP38696.1| ribosomal RNA large subunit methyltransferase N [Xanthomonas
translucens pv. translucens DSM 18974]
gi|440373240|gb|ELQ10004.1| hypothetical protein A989_08379 [Xanthomonas translucens DAR61454]
Length = 401
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL+ +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLQQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IE V+IP+K R TLC+S+QVGCA+NC FCST
Sbjct: 84 VVPNIVFDKPSTDGTHKWLLAMGSDGKNAIEAVYIPDKGRGTLCVSSQVGCALNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNL+ EI+GQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLSTAEIVGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+++ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAADDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ AC RY+ + R +TFEY ++ GIND HA +L LMR+ +
Sbjct: 258 KKYPVAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQAAN 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
L
Sbjct: 378 L 378
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777412|ref|YP_005185849.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508226|gb|AEW51750.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 386
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/362 (48%), Positives = 233/362 (64%), Gaps = 18/362 (4%)
Query: 1 MTNLLDLSPLKFVNY----CKEL----GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLR 52
M ++D + +NY +EL E PFRA+QL +WIH+ G+ DF +MT+L LR
Sbjct: 1 MGAVMDQQKVNLLNYNYSQLRELLIAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLR 60
Query: 53 KKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAI 111
KL I P I++ Q S DGT KW+ ++ N IETVFIPE NR TLC+S+QVGCA+
Sbjct: 61 NKLSQLACIDLPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRGTLCVSSQVGCAL 120
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FCST +QGF RNL+ EIIGQ+W+ +L N ++ITN+VMMGMGEPL
Sbjct: 121 NCSFCSTAKQGFNRNLSTAEIIGQVWLAARELSDN-----NGTHDKKITNVVMMGMGEPL 175
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
LN+ + + A+ +++ D AYGLS+R V LSTSG++P +++L + PV LAVSLHA + LR
Sbjct: 176 LNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELR 235
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVPI+KKYPL +LI C RY PR +TFEY ML G+ND HA +LI L+
Sbjct: 236 NELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHN--- 292
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
K+NLIPFN FP + S I F LM GI RK RG+DI+AACGQL+G
Sbjct: 293 -VPAKVNLIPFNPFPLTQYQRSSRETIDAFRDKLMKHGINTITRKTRGDDIDAACGQLAG 351
Query: 352 KI 353
++
Sbjct: 352 EV 353
>gi|416218218|ref|ZP_11624766.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|416237493|ref|ZP_11631003.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/360 (49%), Positives = 242/360 (67%), Gaps = 16/360 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + LGE FRA Q+ KWI++FGV+DF +MT++S L+ KL +
Sbjct: 21 NLLGMSKDELSAFFVSLGEKSFRATQVMKWIYQFGVTDFFEMTNISKKLQYKLHEVACVV 80
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIFC 116
P + + S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C FC
Sbjct: 81 PPTVKYKEFSQDGTRKWVFEVAGGSLVETVLIPADDGKQFGRKTLCISSQVGCALDCSFC 140
Query: 117 STGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176
STG+QGF R+LT EIIGQLWV +N+ + R +TN+VMMGMGEPLLNY
Sbjct: 141 STGKQGFERDLTPSEIIGQLWVANQSYM--ENVPPTERENR-VTNVVMMGMGEPLLNYDP 197
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ ++ L+L DHA+GLS+R V LSTSG++P + LA++ V LA+SLHA N+ LRN+LVP
Sbjct: 198 VVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDELRNELVP 257
Query: 237 ISKKYPLKELILACHRYI-TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
I+KKYPLK+LI A Y+ +PRH IT EY ML G+ND+D HA +L+ L++
Sbjct: 258 INKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQLVDLLKD----L 313
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
KINLIPFN FP++ S N+RI F+ IL +G TIR+ RG+DI+AACGQL G++
Sbjct: 314 PSKINLIPFNPFPHAPYGRSSNNRIHAFSHILNQAGFVCTIRQTRGDDIDAACGQLVGQV 373
>gi|325927620|ref|ZP_08188849.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
91-118]
gi|325541987|gb|EGD13500.1| 23S rRNA m(2)A-2503 methyltransferase family [Xanthomonas perforans
91-118]
Length = 401
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSADGTHKWLLAMGADGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDTLRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|188991676|ref|YP_001903686.1| radical SAM protein [Xanthomonas campestris pv. campestris str.
B100]
gi|205829934|sp|B0RT51.1|RLMN_XANCB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167733436|emb|CAP51637.1| Radical SAM superfamily protein, probable [Xanthomonas campestris
pv. campestris]
Length = 401
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL ++ + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLEHFFADTLGEARYRAHQMMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+LA E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHAANDALRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|226946070|ref|YP_002801143.1| hypothetical protein Avin_40320 [Azotobacter vinelandii DJ]
gi|226720997|gb|ACO80168.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 381
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 238/355 (67%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL L+ + ++ + +GE FRA Q+ KWIH FGV DF+ M+++ +LR+KLK I
Sbjct: 7 ANLLGLTQPQLESFFESIGEKRFRAGQVMKWIHHFGVDDFDAMSNIGKALREKLKACAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GC+++C FCSTG+
Sbjct: 67 RGPEVVSQDISGDGTRKWVVRVASGSCVETVYIPQAGRGTLCVSSQAGCSLDCSFCSTGK 126
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF +LT EIIGQ+W+ + + R ITN+VMMGMGEPL+N+ + + A
Sbjct: 127 QGFNSDLTAAEIIGQVWIANKSFG-----TVPGKIDRAITNVVMMGMGEPLMNFDNAVAA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+++++ D YG+S+R V LSTSG+ PMID+L + V LA+SLHA N+ LRN+LVPI++K
Sbjct: 182 MQIMMDDLGYGISKRKVTLSTSGVAPMIDELGKIIDVSLALSLHAPNDELRNRLVPINRK 241
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL +++ AC RYI+ + ++T EY +L +ND HA +++ L+R CKINL
Sbjct: 242 YPLAQVLDACRRYISRLGEKRVLTVEYTLLKDVNDQPEHAAQMVELLRD----VPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L +G VT+R RG DI+AACGQL G+++
Sbjct: 298 IPFNPFPHSGYERPSNNAIRRFQDLLHKAGHNVTVRTTRGEDIDAACGQLVGQVM 352
>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
Length = 372
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 240/356 (67%), Gaps = 13/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L+ + ++ +LGE PFRA Q+ KWI+ +G +F+ MT+++ LR+KLK I
Sbjct: 6 TNLLNLTRQEMRHFLADLGEKPFRADQIMKWIYHYGEDNFDNMTNINKVLREKLKQVAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP I +Q SFDGT KW V IE+V+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 KAPEIAVEQRSFDGTIKWAMQVGDQQIESVYIPEADRATLCVSSQVGCALACTFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EIIGQ+W R K I + K R ITN+VMMGMGEPLLN + + A
Sbjct: 126 GFNRNLTVSEIIGQVW------RASKVIGAFGETKVRPITNVVMMGMGEPLLNVSNVVPA 179
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L D YGLS+R V LSTSG++P +DKL + V LA+SLHA N+ LRN++VP++KK
Sbjct: 180 MEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAISLHAPNDELRNEIVPLNKK 239
Query: 241 YPLKELILACHRY--ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ L+ + +RY I+ + +T EY ML +ND HA +L +++ T CKIN
Sbjct: 240 YNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAHQLAKVLKN----TPCKIN 295
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIP+N FP + S N+RI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 296 LIPWNPFPEAPYNKSSNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 351
>gi|372268286|ref|ZP_09504334.1| radical SAM enzyme, Cfr family protein [Alteromonas sp. S89]
Length = 403
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/356 (46%), Positives = 241/356 (67%), Gaps = 16/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS K ++ LGE FRA Q+ KWIH+ GV DF +MT++S ++R KL ++
Sbjct: 36 NLLGLSVDKLADFFAGLGEKRFRAVQVLKWIHQNGVDDFEQMTNVSKAMRAKLSEIAEVR 95
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ S DGTRKW+ V N+IETV+IP+ +R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 96 APKVLKQMDSADGTRKWLIEVTGGNVIETVYIPDGDRGTLCVSSQVGCSLDCSFCATGKQ 155
Query: 122 GFVRNLTVGEIIGQLWVT--EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF R+LT EIIGQ+W+ F ++ G R++TN+VMMGMGEPLLN+ + +
Sbjct: 156 GFNRDLTAAEIIGQVWIACKSFG-------QLQPNGPRKVTNVVMMGMGEPLLNFDNVVD 208
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
++ L++ D+AYG+S+R V LSTSG++P +D+LA+ V LA+SLHA N+ LRN+LVPI+K
Sbjct: 209 SMNLMMEDNAYGISKRRVTLSTSGVVPALDRLAEVTDVSLAISLHAPNDELRNELVPINK 268
Query: 240 KYPLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYP+ L+ + RYI P + +T EY M+ +ND HA +L L+R KI
Sbjct: 269 KYPIAMLLDSAQRYIENMPDNHRKMTIEYTMIREVNDRPEHAHQLAELLRD----VPVKI 324
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN F S+ N+ ++ F +IL++ G VT+R RG+DI+AACGQL+G++
Sbjct: 325 NLIPFNPFELSDYQRVSNNALRRFQQILLDKGYTVTVRTTRGDDIDAACGQLAGQV 380
>gi|294625018|ref|ZP_06703668.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600693|gb|EFF44780.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 405
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 28 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 87
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 88 LVPNVVFDKPSADGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 147
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 148 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 201
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 202 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 261
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 262 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 321
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 322 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 381
Query: 354 L 354
+
Sbjct: 382 M 382
>gi|289670467|ref|ZP_06491542.1| hypothetical protein XcampmN_18763 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 401
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH+ V+DF++MTDL LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHRRYVTDFDQMTDLGKPLRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EI+GQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIVGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|410621688|ref|ZP_11332534.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410158926|dbj|GAC27908.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 385
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 242/355 (68%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L +Y + E PFRA+Q+ KWI++ G SDF+KMT+++ LR KLK++ IK
Sbjct: 18 NLLNLDRQGLSDYFASINEKPFRAEQIMKWIYQVGESDFDKMTNINKDLRSKLKSNCVIK 77
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ IE+V+IPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 78 APVISEHQQATDGTIKFAMLLEGGQEIESVWIPETDRATLCVSSQVGCALECTFCSTGQQ 137
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQ+W + K+ +R ITN+VMMGMGEPLLN K+ + A+
Sbjct: 138 GFNRNLSVAEIIGQVWRVATFIGLSKDT-----SQRPITNVVMMGMGEPLLNLKNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +D L + V LA+SLHA +N LR+++VP++KKY
Sbjct: 193 RIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDNKLRDEIVPVNKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P++E + + RY+ S + +T EY ML+ IND+ A EL ++++ T CKINL
Sbjct: 253 PIEEFLASVRRYLAKSKANQGKVTVEYVMLNQINDSTDQAHELAKVLKE----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P + CS NSR+ F+K+LM G V IRK RG+DI+AACGQL G ++
Sbjct: 309 IPFNPYPGTPYTCSSNSRMDRFSKVLMEYGFTVVIRKTRGDDIDAACGQLVGDVV 363
>gi|387930290|gb|AFK11687.1| ribosomal RNA large subunit methyltransferase [Gallibacterium
anatis]
Length = 372
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 240/356 (67%), Gaps = 13/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L+ + ++ +LGE PFRA Q+ KWI+ +G +F+ MT+++ LR+KLK I
Sbjct: 6 TNLLNLTRQEMRHFLADLGEKPFRADQIMKWIYHYGEDNFDNMTNINKVLREKLKQVAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP I +Q SFDGT KW V IE+V+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 KAPEIAVEQRSFDGTIKWAMQVGDQQIESVYIPEADRATLCVSSQVGCALACTFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EIIGQ+W R K I + K R ITN+VMMGMGEPLLN + + A
Sbjct: 126 GFNRNLTVSEIIGQVW------RASKVIGAFGETKVRPITNVVMMGMGEPLLNVSNVVPA 179
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L D YGLS+R V LSTSG++P +DKL + V LA+SLHA N+ LRN++VP++KK
Sbjct: 180 MEIMLDDFGYGLSKRRVTLSTSGVVPALDKLGEMIDVALAISLHAPNDELRNEIVPLNKK 239
Query: 241 YPLKELILACHRY--ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ L+ + +RY I+ + +T EY ML +ND HA +L +++ T CKIN
Sbjct: 240 YNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAHQLAKVLKN----TPCKIN 295
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIP+N FP + S N+RI F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 296 LIPWNPFPEAPYNKSTNTRIDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 351
>gi|408824036|ref|ZP_11208926.1| ribosomal RNA large subunit methyltransferase N [Pseudomonas
geniculata N1]
Length = 401
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 238/361 (65%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE FRA Q+ KWIH V+DF++MTDL LR KL+ +
Sbjct: 24 NLLDLDRAGLEKFFVEVLGEKKFRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQAHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNIVFDKPSADGTHKWLLAMGVDGKNAIETVYIPDKTRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV R N+ R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAA---RHLGNV---PHQMRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++P ID+L+ E V LAVSLHA N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHAPNDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA EL LMR+ N +
Sbjct: 258 KKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELARLMRQFDNAVQAKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S K+NLIPFN FP + S+ + I+ F KIL++S + +R+ RG+DI+AACGQL G++
Sbjct: 318 SGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|127512219|ref|YP_001093416.1| ribosomal RNA large subunit methyltransferase N [Shewanella loihica
PV-4]
gi|205829882|sp|A3QCF9.1|RLMN_SHELP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|126637514|gb|ABO23157.1| radical SAM enzyme, Cfr family [Shewanella loihica PV-4]
Length = 373
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 179/354 (50%), Positives = 233/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KW++ FGVSDF +MT+++ LR KL +
Sbjct: 7 NLLDLDRKGLRALFTEMGEKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKLAARCEVV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSADGTIKFAINVGNGQEVETVYIPEEDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L +K G+R I+N+VMMGMGEPLLN K+ + A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFQKET-----GERPISNVVMMGMGEPLLNLKNVMPAI 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V +STSG++P +D L V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELRDVLVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + A RY+ S R +T EY ML IND+ A EL LM+ T CKINL
Sbjct: 242 PLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|381170017|ref|ZP_09879178.1| radical SAM superfamily protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380689540|emb|CCG35665.1| radical SAM superfamily protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 393
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 16 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 75
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 76 LVPNVVFDKPSADGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 135
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 136 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 189
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 190 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 249
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 250 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 309
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 310 AGKVNLIPFNPFPGARYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 369
Query: 354 L 354
+
Sbjct: 370 M 370
>gi|429212017|ref|ZP_19203182.1| putative Fe-S-cluster redox enzyme [Pseudomonas sp. M1]
gi|428156499|gb|EKX03047.1| putative Fe-S-cluster redox enzyme [Pseudomonas sp. M1]
Length = 380
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 235/355 (66%), Gaps = 11/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL ++ + + + +GE FRA Q+ +WIH FG DF+ MT++ +LR+KLK I
Sbjct: 8 ANLLGMTKPQLEEFFESIGEKRFRAGQVMQWIHHFGAEDFDAMTNVGKALREKLKACAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S IS DGTRKW+ V + +ETV+IP+ R TLC+S+Q GCA++C FCSTG+
Sbjct: 68 RGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQNGRGTLCVSSQAGCALDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF +LT EIIGQ+W+ + + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 QGFNSDLTSAEIIGQVWLANKSFG-----TVPGKIDRAITNVVMMGMGEPLLNFDNVVTA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ +++ D YG+S+R V LSTSG++PMIDKL + V LA+SLHA N+ LRN+LVPI+KK
Sbjct: 183 MSIMMEDFGYGISKRKVTLSTSGVVPMIDKLGEVTDVSLALSLHAPNDELRNQLVPINKK 242
Query: 241 YPLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL L+ AC RYI ++T EY +L +ND HA ++I+L+++ CKINL
Sbjct: 243 YPLAVLLDACQRYIGRLGKERVLTVEYTLLKDVNDQPEHAEQMIALLKE----IPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+S N+ I+ F +L G VT+R RG+DI+AACGQL G+++
Sbjct: 299 IPFNPFPHSGYERPSNNSIRRFQDMLHKGGFNVTVRTTRGDDIDAACGQLVGQVM 353
>gi|190574019|ref|YP_001971864.1| SAM methylase [Stenotrophomonas maltophilia K279a]
gi|254524361|ref|ZP_05136416.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
gi|344207117|ref|YP_004792258.1| ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia JV3]
gi|386718244|ref|YP_006184570.1| ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia D457]
gi|424668415|ref|ZP_18105440.1| ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia Ab55555]
gi|205829904|sp|B2FNQ6.1|RLMN_STRMK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|190011941|emb|CAQ45562.1| putative SAM methylase protein [Stenotrophomonas maltophilia K279a]
gi|219721952|gb|EED40477.1| radical SAM enzyme, Cfr family [Stenotrophomonas sp. SKA14]
gi|343778479|gb|AEM51032.1| Ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia JV3]
gi|384077806|emb|CCH12395.1| Ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia D457]
gi|401068677|gb|EJP77201.1| ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia Ab55555]
gi|456737326|gb|EMF62033.1| Ribosomal RNA large subunit methyltransferase N [Stenotrophomonas
maltophilia EPM1]
Length = 401
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 238/361 (65%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE FRA Q+ KWIH V+DF++MTDL LR KL+ +
Sbjct: 24 NLLDLDRAGLEKFFVEVLGEKKFRAHQVMKWIHHRYVTDFDEMTDLGKVLRAKLQAHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNIVFDKPSADGTHKWLLAMGVDGKNAIETVYIPDKTRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV R N+ R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAA---RHLGNV---PHQMRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++P ID+L+ E V LAVSLHA N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSAESDVSLAVSLHAPNDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA EL LMR+ N +
Sbjct: 258 KKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELARLMRQFDNAVQAKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S K+NLIPFN FP + S+ + I+ F KIL++S + +R+ RG+DI+AACGQL G++
Sbjct: 318 SGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 232/354 (65%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL + K + + LGE FRA Q+ +WIH+ G DF++MT++S LR+KLK I
Sbjct: 8 TNLLGMPKAKMEAFFESLGEKRFRATQVLQWIHQRGADDFDQMTNMSKVLREKLKAVAEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ D+ S DGTRKW+ + N +ETV IP+ R TLC+S+Q+GC+++C FCSTG+
Sbjct: 68 RGPEVVYDESSKDGTRKWVMRMDNGNSVETVLIPDGERGTLCVSSQIGCSLDCTFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
+GF RNLT EIIGQ+WV R+ + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 RGFNRNLTAAEIIGQVWVA-----RKAFMPFEPGPDRPITNVVMMGMGEPLLNFDNVVDA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D AYG+S+R V +STSG++P +DKL + V LA+SLHA N+ LRN+LVP++KK
Sbjct: 183 MNLMMEDLAYGISKRRVTVSTSGVVPALDKLGEVTDVSLAISLHAPNDELRNQLVPLNKK 242
Query: 241 YPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+ EL+ A RY+ P + T EY ++ G+ND HA EL ++R CKINL
Sbjct: 243 YPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELAVVLRG----LPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S+ + + F +L +G T+R RG+DI+AACGQL G +
Sbjct: 299 IPFNPFPESDFRRPSMNATRRFQSVLNEAGYIATVRTTRGDDIDAACGQLVGMV 352
>gi|205829856|sp|Q5ZV93.2|RLMN_LEGPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/334 (51%), Positives = 222/334 (66%), Gaps = 10/334 (2%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
E PFRA+QL +WIH+ G+ DF +MT+L LR KL I P I++ Q S DGT KW+
Sbjct: 25 EKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWL 84
Query: 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVT 139
++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +QGF RNL+ EIIGQ+W+
Sbjct: 85 LKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLA 144
Query: 140 EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL 199
+L N ++ITN+VMMGMGEPLLN+ + + A+ +++ D AYGLS+R V L
Sbjct: 145 ARELSDN-----NGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTL 199
Query: 200 STSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259
STSG++P +++L + PV LAVSLHA + LRN+LVPI+KKYPL +LI C RY PR
Sbjct: 200 STSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPR 259
Query: 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319
+TFEY ML G+ND HA +LI L+ K+NLIPFN FP + S I
Sbjct: 260 RKVTFEYVMLKGVNDQPEHASQLIKLLHN----VPAKVNLIPFNPFPLTQYQRSSRETID 315
Query: 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F LM GI RK RG+DI+AACGQL+G++
Sbjct: 316 AFRDKLMKHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|294666609|ref|ZP_06731848.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603629|gb|EFF47041.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 405
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 28 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 87
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 88 LVPNVVFDKPSSDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 147
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 148 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 201
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 202 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 261
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 262 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 321
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 322 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 381
Query: 354 L 354
+
Sbjct: 382 M 382
>gi|397667169|ref|YP_006508706.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395130580|emb|CCD08825.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/334 (51%), Positives = 222/334 (66%), Gaps = 10/334 (2%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
E PFRA+QL +WIH+ G+ DF +MT+L LR KL I P I++ Q S DGT KW+
Sbjct: 25 EKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWL 84
Query: 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVT 139
++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +QGF RNL+ EIIGQ+W+
Sbjct: 85 LKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLA 144
Query: 140 EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL 199
+L N ++ITN+VMMGMGEPLLN+ + + A+ +++ D AYGLS+R V L
Sbjct: 145 ARELSDN-----NGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTL 199
Query: 200 STSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259
STSG++P +++L + PV LAVSLHA + LRN+LVPI+KKYPL +LI C RY PR
Sbjct: 200 STSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPR 259
Query: 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319
+TFEY ML G+ND HA +LI L+ K+NLIPFN FP + S I
Sbjct: 260 RKVTFEYVMLKGVNDQPEHASQLIKLLHN----VPAKVNLIPFNPFPLTQYQRSSRETID 315
Query: 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F LM GI RK RG+DI+AACGQL+G++
Sbjct: 316 AFRDKLMKHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|418521393|ref|ZP_13087437.1| hypothetical protein WS7_10278 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|205829947|sp|Q8PKZ1.2|RLMN_XANAC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|410702568|gb|EKQ61071.1| hypothetical protein WS7_10278 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 401
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSADGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|390991319|ref|ZP_10261587.1| radical SAM superfamily protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372553971|emb|CCF68562.1| radical SAM superfamily protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 401
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSADGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|452745027|ref|ZP_21944865.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
haemolytica serotype 6 str. H23]
gi|452086867|gb|EME03252.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
haemolytica serotype 6 str. H23]
Length = 386
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 21 NLLNLNRQEMRELFAEMGEKPFRADQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL+V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 141 FNRNLSVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DK+ ++ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLHAPNDELRDELVPINKKY 254
Query: 242 PLKELILACHRY--ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + ++Y ++ + +T EY ML +ND+ HA +L +++ T CKINL
Sbjct: 255 NIKMLMDSVNKYREVSNANHGKVTIEYVMLDHVNDSTNHAHQLAEVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G VT+RK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAACGQLAGDVI 365
>gi|380512239|ref|ZP_09855646.1| hypothetical protein XsacN4_13528 [Xanthomonas sacchari NCPPB 4393]
Length = 401
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 172/361 (47%), Positives = 238/361 (65%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE +RA Q+ KWIH V+DF++MTDL +LR KL+ +
Sbjct: 24 NLLDLDREGLERFFAETLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLQQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 VVPNIVFDKPSADGTHKWLLAMGVDGKNAIETVYIPDKTRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNL+ EIIGQ+WV L N+ R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLSTAEIIGQVWVAARHL---GNV---PHQMRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++P ID+L+ E V LAVSLHA N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSSESDVSLAVSLHAPNDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK--NKILTS- 294
KKYP+ EL+ AC RY+ + R +TFEY ++ GIND HA +L LMR+ N + S
Sbjct: 258 KKYPIAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQASN 317
Query: 295 -CKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|21242760|ref|NP_642342.1| hypothetical protein XAC2016 [Xanthomonas axonopodis pv. citri str.
306]
gi|21108240|gb|AAM36878.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 405
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 28 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 87
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 88 LVPNVVFDKPSADGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 147
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 148 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 201
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 202 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 261
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 262 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 321
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 322 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 381
Query: 354 L 354
+
Sbjct: 382 M 382
>gi|397663988|ref|YP_006505526.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395127399|emb|CCD05591.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/334 (51%), Positives = 222/334 (66%), Gaps = 10/334 (2%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
E PFRA+QL +WIH+ G+ DF +MT+L LR KL I P I++ Q S DGT KW+
Sbjct: 25 EKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWL 84
Query: 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVT 139
++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +QGF RNL+ EIIGQ+W+
Sbjct: 85 LKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLA 144
Query: 140 EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL 199
+L N ++ITN+VMMGMGEPLLN+ + + A+ +++ D AYGLS+R V L
Sbjct: 145 ARELSDN-----NGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTL 199
Query: 200 STSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259
STSG++P +++L + PV LAVSLHA + LRN+LVPI+KKYPL +LI C RY PR
Sbjct: 200 STSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPR 259
Query: 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319
+TFEY ML G+ND HA +LI L+ K+NLIPFN FP + S I
Sbjct: 260 RKVTFEYVMLKGVNDQPEHASQLIKLLHN----VPAKVNLIPFNPFPLTQYQRSSRETID 315
Query: 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F LM GI RK RG+DI+AACGQL+G++
Sbjct: 316 AFRDKLMKHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|78047623|ref|YP_363798.1| radical SAM superfamily protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036053|emb|CAJ23744.1| radical SAM superfamily protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 405
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 28 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKLHQHAEV 87
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 88 LVPNVVFDKPSADGTHKWLLAMGADGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 147
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 148 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 201
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 202 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDTLRESLVPLN 261
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 262 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 321
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 322 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 381
Query: 354 L 354
+
Sbjct: 382 M 382
>gi|418517486|ref|ZP_13083649.1| hypothetical protein MOU_11861 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410705864|gb|EKQ64331.1| hypothetical protein MOU_11861 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 397
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 20 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 79
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 80 LVPNVVFDKPSADGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 139
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 140 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 193
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 194 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 253
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 254 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 313
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 314 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 373
Query: 354 L 354
+
Sbjct: 374 M 374
>gi|114562291|ref|YP_749804.1| ribosomal RNA large subunit methyltransferase N [Shewanella
frigidimarina NCIMB 400]
gi|122300423|sp|Q085U9.1|RLMN_SHEFN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114333584|gb|ABI70966.1| radical SAM enzyme, Cfr family protein [Shewanella frigidimarina
NCIMB 400]
Length = 373
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 232/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KW++ FGV+DF +M +++ LR KL I
Sbjct: 7 NLLDLDRKGLRALFSEMGEKPFRADQLMKWVYHFGVTDFEEMNNINKVLRTKLAAKCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE++R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 67 APEIASFQKSNDGTIKFAINVGQGQEVETVYIPEEDRATLCVSSQVGCALECTFCSTGQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EIIGQ+W L K+ G R I+N+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIIGQVWRVSQFLGFHKDT-----GDRPISNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDAIDVALAVSIHAPNDELRDVLVPVNKKY 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RY+ S R +T EY ML IND+ A EL LM+ T CKINL
Sbjct: 242 PLQEFLAGIRRYLEKSNANRGRVTVEYVMLDHINDSTDQAHELAILMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEHGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|384427905|ref|YP_005637264.1| radical SAM enzyme, Cfr family [Xanthomonas campestris pv. raphani
756C]
gi|341937007|gb|AEL07146.1| radical SAM enzyme, Cfr family [Xanthomonas campestris pv. raphani
756C]
Length = 397
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL ++ + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 20 NLLDLDREGLEHFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHRHAEV 79
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 80 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 139
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 140 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 193
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+LA E V LAVSLHA+N+ LR LVP++
Sbjct: 194 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHAANDALRESLVPLN 253
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 254 KKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 313
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 314 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 373
Query: 354 L 354
+
Sbjct: 374 M 374
>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 415
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 50 NLLNLNRQEMRELFAEMGEKPFRADQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIK 109
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 110 APEVAVEQRSADGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQG 169
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL+V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 170 FNRNLSVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAM 223
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DK+ ++ V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 224 EIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLHAPNDELRDELVPINKKY 283
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + ++Y+ S + +T EY ML +ND+ HA +L +++ T CKINL
Sbjct: 284 NIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQLAEVLKN----TPCKINL 339
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G VT+RK RG+DI+AACGQL+G ++
Sbjct: 340 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVTVRKTRGDDIDAACGQLAGDVI 394
>gi|336451639|ref|ZP_08622076.1| methyltransferase [Idiomarina sp. A28L]
gi|336281452|gb|EGN74732.1| methyltransferase [Idiomarina sp. A28L]
Length = 378
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 174/354 (49%), Positives = 234/354 (66%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + ELGE PFRA Q+ KWI+ + + DF+ MT+L+ LR+KLK IK
Sbjct: 9 NLLDLNREGIRQFFAELGEKPFRADQVMKWIYHYCIDDFDNMTNLNKPLREKLKQIAEIK 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I + S DGT K+ + +E+V+IPE +R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 69 APEIKVQKESIDGTIKFAMELSDGQEVESVWIPEADRATLCVSSQVGCALECTFCSTGQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W L G + +TN+VMMGMGEPLLN K+ + AL
Sbjct: 129 GFNRNLKVSEIIGQVWRVNKLLG-----SYGDTGVKPVTNVVMMGMGEPLLNMKNLVPAL 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D YGLS+R + +STSG++P +D+L ++ V LA+SLHA NN LR+++VPI+KKY
Sbjct: 184 QLMLEDFGYGLSKRRITVSTSGVVPALDQLREQVDVALAISLHAPNNKLRDEIVPINKKY 243
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+ E + A RY+ S +T EY M+ IND+ HA EL +++ T KINLI
Sbjct: 244 PIAEFLAASRRYVEASKAQTKVTVEYVMIDHINDSTEHAHELAEVLKD----TPSKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP S S NSRI F+K+LM+ G V +RK RG+DI+AACGQL G ++
Sbjct: 300 PFNPFPGSEYGRSSNSRIDRFSKVLMDYGYTVIVRKTRGDDIDAACGQLVGDVV 353
>gi|399544718|ref|YP_006558026.1| ribosomal RNA large subunit methyltransferase N [Marinobacter sp.
BSs20148]
gi|399160050|gb|AFP30613.1| Ribosomal RNA large subunit methyltransferase N [Marinobacter sp.
BSs20148]
Length = 370
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 234/354 (66%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL + K Y + LGE FRA Q+ +WIH+ GV DF++MT++S LR KLK +
Sbjct: 8 TNLLGMPKAKLEAYFESLGEKRFRATQVLQWIHQRGVGDFDEMTNMSKPLRDKLKLIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ D+++ DGTRKW+ + N IETV IP+ R TLC+S+Q+GC+++C FCSTG+
Sbjct: 68 RGPEVVYDELAKDGTRKWVMRMDNGNNIETVLIPDGERGTLCVSSQIGCSLDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
+GF RNLT EIIGQ+W R+ + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 RGFNRNLTSAEIIGQVWAA-----RKTFMPYAPGPDRPITNVVMMGMGEPLLNFDNVVDA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D AYG+S+R V LSTSG++P IDKL + V LA+SLHA+N+ LRN+LVPI+KK
Sbjct: 183 MNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLHAANDELRNQLVPINKK 242
Query: 241 YPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+ EL+ A RY++ P + T EY ++ G+ND A EL ++R CKINL
Sbjct: 243 YPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELAEVLRG----LPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP+S + + F +L +G T+R RG+DI+AACGQL GK+
Sbjct: 299 IPFNPFPDSGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACGQLVGKV 352
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516.1|RLMN_LEGPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/334 (51%), Positives = 222/334 (66%), Gaps = 10/334 (2%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
E PFRA+QL +WIH+ G+ DF +MT+L LR KL I P I++ Q S DGT KW+
Sbjct: 25 EKPFRAQQLFQWIHQVGICDFAQMTNLGKVLRNKLSQLACIDLPEIVACQKSADGTHKWL 84
Query: 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVT 139
++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +QGF RNL+ EIIGQ+W+
Sbjct: 85 LKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQGFNRNLSTAEIIGQVWLA 144
Query: 140 EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL 199
+L N ++ITN+VMMGMGEPLLN+ + + A+ +++ D AYGLS+R V L
Sbjct: 145 ARELSDN-----NGTHDKKITNVVMMGMGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTL 199
Query: 200 STSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259
STSG++P +++L + PV LAVSLHA + LRN+LVPI+KKYPL +LI C RY PR
Sbjct: 200 STSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKYPLSQLISLCKRYFKDEPR 259
Query: 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319
+TFEY ML G+ND HA +LI L+ K+NLIPFN FP + S I
Sbjct: 260 RKVTFEYVMLKGVNDQPEHASQLIKLLHN----VPAKVNLIPFNPFPLTQYQRSSRETID 315
Query: 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F LM GI RK RG+DI+AACGQL+G++
Sbjct: 316 AFRDKLMKHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|205829948|sp|Q3BTW5.2|RLMN_XANC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 401
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLCKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSADGTHKWLLAMGADGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDTLRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|21231430|ref|NP_637347.1| hypothetical protein XCC1982 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768516|ref|YP_243278.1| hypothetical protein XC_2202 [Xanthomonas campestris pv. campestris
str. 8004]
gi|81305512|sp|Q4UUL5.1|RLMN_XANC8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81794005|sp|Q8P984.1|RLMN_XANCP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21113100|gb|AAM41271.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573848|gb|AAY49258.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 401
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL ++ + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLEHFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+LA E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLATESDVSLAVSLHAANDVLRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
Length = 377
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 230/353 (65%), Gaps = 12/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL S + + GE FRA QL KW+H+ GV+DF+ MTD+S +LR++L I
Sbjct: 10 NLLGYSRSQLTELLAQWGEPRFRATQLVKWMHQRGVTDFDAMTDVSRTLRERLARETEIA 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I ++ S DGT KW+ + N IETVFIPE R TLCIS+QVGCA++C FCST +Q
Sbjct: 70 LPEIALEKASGDGTVKWVLRLADGNAIETVFIPESGRGTLCISSQVGCALDCTFCSTAQQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQ+W+ +L + + R ++N+V+MGMGEPL NY + + A
Sbjct: 130 GFNRNLTAAEIIGQVWLAMQRLPAPEGRQ------RAVSNVVLMGMGEPLANYDAVVAAC 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+ D+AYGLSRR V LSTSG++P +D+L++ V LAVSLHA N+ LR++LVPI++KY
Sbjct: 184 QLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVALAVSLHAPNDELRDRLVPINRKY 243
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+ L+ +C RY+ + H +TFEY +L G+ND HA +L ++R KINLI
Sbjct: 244 PIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQLAGVLRG----IPGKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP + I+ F + L +G T+R+ RG+DI+AACGQL G++
Sbjct: 300 PFNPFPGAPFDRPAEGDIERFERQLQKAGYVTTVRRTRGDDIDAACGQLVGQV 352
>gi|289666007|ref|ZP_06487588.1| hypothetical protein XcampvN_23775 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 401
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 170/361 (47%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKPLRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EI+GQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIVGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|384419369|ref|YP_005628729.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353462282|gb|AEQ96561.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 393
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF+ MTDL +LR KL +
Sbjct: 16 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKLHQHAEV 75
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 76 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 135
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 136 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 189
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 190 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 249
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 250 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 309
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 310 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 369
Query: 354 L 354
+
Sbjct: 370 M 370
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM protein [Legionella pneumophila 2300/99 Alcoy]
gi|205829782|sp|A5IC42.1|RLMN_LEGPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 228/352 (64%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + + E PFRA+QL +WIH+ G+ DF +MT+L LR KL I
Sbjct: 7 NLLNYNYSQLRELLMAWDEKPFRAQQLFQWIHQVGIRDFAQMTNLGKVLRNKLSQLACID 66
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++ Q S DGT KW+ ++ N IETVFIPE NR TLC+S+QVGCA+NC FCST +Q
Sbjct: 67 LPEIVACQKSADGTHKWLLKLECGNCIETVFIPEANRGTLCVSSQVGCALNCSFCSTAKQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+W+ +L N ++ITN+VMMGMGEPLLN+ + + A+
Sbjct: 127 GFNRNLSTAEIIGQVWLAARELSDN-----NGAHDKKITNVVMMGMGEPLLNFDNVVSAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D AYGLS+R V LSTSG++P +++L + PV LAVSLHA + LRN+LVPI+KKY
Sbjct: 182 SIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSPVALAVSLHAPTDELRNELVPINKKY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL +LI C RY PR +TFEY ML G+ND HA +LI L+ K+NLIP
Sbjct: 242 PLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKLLHN----VPAKVNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S I F L+ GI RK RG+DI+AACGQL+G++
Sbjct: 298 FNPFPLTQYQRSSRETIDAFRDKLIKHGINTITRKTRGDDIDAACGQLAGEV 349
>gi|149908872|ref|ZP_01897532.1| Hypothetical protein yfgB [Moritella sp. PE36]
gi|149808146|gb|EDM68087.1| Hypothetical protein yfgB [Moritella sp. PE36]
Length = 371
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 178/354 (50%), Positives = 233/354 (65%), Gaps = 13/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL Y ++GE PFRA Q+ KWI+ G D N+MT+L+ LR+KL I+
Sbjct: 7 NLLDLDRKAMRQYFADIGEKPFRADQVMKWIYHEGCDDINEMTNLNKKLREKLLRETVIQ 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 67 APEISKEQRSADGTIKWALKVDGQEYETVYIPDGDRATLCVSSQVGCALECTFCSTAQQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W R + I N++ KR ITN+VMMGMGEPLLN + + AL
Sbjct: 127 FNRNLRVSEIIGQVW------RASQVIGFNNK-KRAITNVVMMGMGEPLLNMTNLVPALN 179
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D+ +GLS+R V +STSG++P +DKLA V LA+SLHASN+ LR++LVPI+KKY
Sbjct: 180 IMLDDYGFGLSKRRVTVSTSGVVPALDKLADSIDVALAISLHASNDTLRDELVPINKKYN 239
Query: 243 LKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++ L+ + YI S R +T EY +L +ND+ A EL L++ T CKINLI
Sbjct: 240 IEMLLASVKNYIGKSNANRKKVTIEYVLLDHVNDSTDQAHELAHLLKD----TPCKINLI 295
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP S+ NSRI F K+LM VTIRK RG+DI+AACGQL+G ++
Sbjct: 296 PFNPFPGSDYGKPSNSRIDRFNKVLMEYENTVTIRKTRGDDIDAACGQLAGDVI 349
>gi|406941482|gb|EKD73958.1| hypothetical protein ACD_45C00125G0007 [uncultured bacterium]
Length = 368
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 179/352 (50%), Positives = 231/352 (65%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS + +C LGE +RA Q+ KWIH GV D M++LS SLR+K+ + I
Sbjct: 11 NLLGLSRKEMEAFCITLGEKSYRATQILKWIHFQGVCDIQAMSNLSKSLREKIADLAEIH 70
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + + S DGT KWI + N IE VFIPEK R TLC+S+QVGC +NC FCSTG+Q
Sbjct: 71 PPEVAYENTSPDGTHKWILRLTDGNCIEAVFIPEKTRGTLCVSSQVGCTLNCDFCSTGKQ 130
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQ+W+ KN +++ ITN+VMMGMGEPLLN+++ + A+
Sbjct: 131 GFSRNLTTDEIIGQVWLAVRHF--AKNHRVHDHA---ITNVVMMGMGEPLLNFENVVNAM 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D AYGLS+R V LST+G++P + +L V LAVSLHA N+ LRN LVP++KKY
Sbjct: 186 DIMLDDFAYGLSKRRVTLSTAGVVPAMYELRNVSDVALAVSLHAPNDELRNVLVPLNKKY 245
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC Y R +T EY ML GINDTD HA +LI L+ N I K+NLIP
Sbjct: 246 PLKELMTACKEYFKEDKRRYVTMEYVMLAGINDTDEHAQQLIRLL--NGI--RAKVNLIP 301
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPN++ S I F + LM++GI RK RG+ I+AACGQL G++
Sbjct: 302 FNPFPNTSYQRSDAPTIDRFRETLMHAGINAITRKTRGDAIDAACGQLVGQV 353
>gi|58582157|ref|YP_201173.1| hypothetical protein XOO2534 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84624049|ref|YP_451421.1| hypothetical protein XOO_2392 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|75435230|sp|Q5GZT3.1|RLMN_XANOR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123521888|sp|Q2P2T0.1|RLMN_XANOM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829944|sp|B2SMB3.2|RLMN_XANOP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|58426751|gb|AAW75788.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|84367989|dbj|BAE69147.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 401
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF+ MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|285018369|ref|YP_003376080.1| hypothetical protein XALc_1591 [Xanthomonas albilineans GPE PC73]
gi|283473587|emb|CBA16090.1| conserved hypothetical protein 48 [Xanthomonas albilineans GPE
PC73]
Length = 401
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 237/361 (65%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE +RA Q+ KWIH V+DF +MTDL +LR KL+ +
Sbjct: 24 NLLDLDREGLERFFAETLGEARYRAHQVMKWIHHRYVTDFEQMTDLGKALRAKLQQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 IVPNIVFDKPSADGTHKWLLAMGVDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNL+ EI+GQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLSTAEIVGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++P ID+L+ E V LAVSLHA N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSGESDVSLAVSLHAPNDTLRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ AC RY+ + R +TFEY ++ GIND HA +L LMR+ +
Sbjct: 258 KKYPIAELMAACARYLRANKRRESVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQAAN 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYARSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|188576716|ref|YP_001913645.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576907|ref|YP_001913836.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521168|gb|ACD59113.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521359|gb|ACD59304.1| radical SAM enzyme, Cfr family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 393
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/361 (47%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF+ MTDL +LR KL +
Sbjct: 16 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDHMTDLGKALRAKLHQHAEV 75
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 76 LVPNVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCSFCST 135
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 136 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 189
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 190 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRETLVPLN 249
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ S R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 250 KKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 309
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 310 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTIVRRTRGDDIDAACGQLKGQV 369
Query: 354 L 354
+
Sbjct: 370 M 370
>gi|126668577|ref|ZP_01739531.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
gi|126626982|gb|EAZ97625.1| predicted Fe-S-cluster redox enzyme [Marinobacter sp. ELB17]
Length = 370
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 233/354 (65%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL + K Y + LGE FRA Q+ +W+H+ GV DF++MT++S LR KLK +
Sbjct: 8 TNLLGMPKAKLEAYFESLGEKRFRATQVLQWVHQRGVGDFDEMTNMSKPLRDKLKLIAEV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ D+++ DGTRKW+ + N IETV IP+ R TLC+S+Q+GC+++C FCSTG+
Sbjct: 68 RGPEVVYDELAKDGTRKWVMRMDNGNNIETVLIPDGERGTLCVSSQIGCSLDCSFCSTGK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
+GF RNLT EIIGQ+W R+ + R ITN+VMMGMGEPLLN+ + + A
Sbjct: 128 RGFNRNLTSAEIIGQVWAA-----RKTFMPYAPGPDRPITNVVMMGMGEPLLNFDNVVDA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D AYG+S+R V LSTSG++P IDKL + V LA+SLHA+N+ LRN+LVPI+KK
Sbjct: 183 MNLMMEDLAYGISKRRVTLSTSGVVPAIDKLGEVTDVSLAISLHAANDELRNQLVPINKK 242
Query: 241 YPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+ EL+ A RY++ P + T EY ++ G+ND A EL ++R CKINL
Sbjct: 243 YPIAELLAATRRYLSRLPDKRKATIEYTLMAGVNDHVDQARELAEVLRG----LPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S + + F +L +G T+R RG+DI+AACGQL GK+
Sbjct: 299 IPFNPFPESGYERPSMNATRRFQTVLNEAGYIATVRMPRGDDIDAACGQLVGKV 352
>gi|71274608|ref|ZP_00650896.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
gi|170730870|ref|YP_001776303.1| hypothetical protein Xfasm12_1780 [Xylella fastidiosa M12]
gi|205829927|sp|B0U494.1|RLMN_XYLFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71164340|gb|EAO14054.1| Conserved hypothetical protein 48 [Xylella fastidiosa Dixon]
gi|167965663|gb|ACA12673.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 406
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/361 (46%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+L + ++ LGE +RA Q+ KWIH V+DF +MTD+ +LR +L+ +
Sbjct: 29 NLLELDREGLERFFEDVLGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQACAEV 88
Query: 62 KAPHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ P ++ D+ S DGT KW+ + +KN IETV+IP+K R TLC+S+Q+GC +NC FCST
Sbjct: 89 RVPRVVFDKHSADGTHKWLLAMGTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCST 148
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 149 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQRRRLTNVVMMGMGEPLMNFDNVV 202
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGLS + V LSTSG++PMID+L+ E V LAVSLHA N+ LR +LVP++
Sbjct: 203 RAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLN 262
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ +C RY++ + R +TFEY ++ G+ND HA EL LMR+ ++
Sbjct: 263 KKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKG 322
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S I+ F KIL+++ I +R+ RG+DI+AACGQL G++
Sbjct: 323 AAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV 382
Query: 354 L 354
+
Sbjct: 383 V 383
>gi|182682234|ref|YP_001830394.1| radical SAM protein [Xylella fastidiosa M23]
gi|182632344|gb|ACB93120.1| radical SAM enzyme, Cfr family [Xylella fastidiosa M23]
Length = 401
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/361 (46%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+L + ++ LGE +RA Q+ KWIH V+DF +MTD+ +LR +L+ +
Sbjct: 24 NLLELDREGLERFFEDVLGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQACAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ P ++ D+ S DGT KW+ + +KN IETV+IP+K R TLC+S+Q+GC +NC FCST
Sbjct: 84 RVPRVVFDKHSADGTHKWLLAMGTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGLS + V LSTSG++PMID+L+ E V LAVSLHA N+ LR +LVP++
Sbjct: 198 RAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ +C RY++ + R +TFEY ++ G+ND HA EL LMR+ ++
Sbjct: 258 KKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKG 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S I+ F KIL+++ I +R+ RG+DI+AACGQL G++
Sbjct: 318 AAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 V 378
>gi|410618485|ref|ZP_11329430.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410162027|dbj|GAC33568.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 380
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 241/356 (67%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFRA Q+ KWI++ G+SDF++MT+L+ LR+KL IK
Sbjct: 13 NLLNFNRAGLREYFSSIGEKPFRADQMMKWIYQQGISDFDQMTNLNKILREKLNAQCEIK 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K++ ++ +ETV+IP+ +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 APEIAYQQAASDGTIKFVLRLEGGQEVETVWIPDADRATLCVSSQVGCALECTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL+V EIIGQ+W R I + N KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 133 GFNRNLSVSEIIGQVW------RVATTIGLSNDSSKRPITNVVMMGMGEPLLNLKNVVPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR++LVP++KK
Sbjct: 187 MELMLDDLAFGLSKRRVTLSTSGVVPALDILGDKIDVALAISLHAPDDKLRDELVPVNKK 246
Query: 241 YPLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ +++ + +T EY ML+G+ND+ A L ++ T CK+N
Sbjct: 247 YPIQEFLAGVRRYLAKSHANQGKVTVEYVMLNGVNDSTDQAHALAKVLAD----TPCKLN 302
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI FAK+L + G+ V +RK RG+DI+AACGQL G ++
Sbjct: 303 LIPFNPYPGSPYTRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQLVGDVV 358
>gi|194365435|ref|YP_002028045.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
R551-3]
gi|254807214|sp|B4SSW3.1|RLMN_STRM5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|194348239|gb|ACF51362.1| radical SAM enzyme, Cfr family [Stenotrophomonas maltophilia
R551-3]
Length = 401
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/361 (47%), Positives = 238/361 (65%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + E LGE FRA Q+ KWIH V++F++MTDL LR KL+ +
Sbjct: 24 NLLDLDRAGLEKFFVEVLGEKKFRAHQVMKWIHHRYVTEFDEMTDLGKVLRAKLQEHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+I+ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPNIVFDKPSADGTHKWLLAMGVDGKNAIETVYIPDKTRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+W+ R N+ R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIIGQVWIAA---RHLGNV---PHQMRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++P ID+L+ E V LAVSLHA N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSTESDVSLAVSLHAPNDALRETLVPLN 257
Query: 239 KKYPLKELILACHRYITYSP-RHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA EL LMR+ N +
Sbjct: 258 KKYPIAELMASCARYLRANKRRESVTFEYTLMKGINDKPEHARELARLMRQFDNAVQAKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S K+NLIPFN FP + S+ + I+ F KIL++S + +R+ RG+DI+AACGQL G++
Sbjct: 318 SGKVNLIPFNPFPGTRYERSEEAHIRAFQKILLDSNVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|406915762|gb|EKD54811.1| hypothetical protein ACD_60C00041G0002 [uncultured bacterium]
Length = 381
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/352 (49%), Positives = 231/352 (65%), Gaps = 10/352 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS + +C LGE P+RA Q+ KWIH GV D + M+++S +LR+K+ I
Sbjct: 11 NLLGLSRKEMEAFCMSLGEKPYRATQILKWIHFQGVRDIHAMSNISKALREKISAIAEIL 70
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I + S DGT KW+ + N IETVFIPEK R TLC+S+QVGC +NC FCSTG+Q
Sbjct: 71 PPEIAYENTSLDGTHKWVLRLADGNCIETVFIPEKTRGTLCVSSQVGCTLNCDFCSTGKQ 130
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQL++ L +++ + ++ +TN+VMMGMGEPLLN+++ + A+
Sbjct: 131 GFNRNLTAHEIIGQLFIAVRSLSKQQGLHDHA-----VTNVVMMGMGEPLLNFENVVNAM 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D YGLS+R V LST+G+IP + +L + V LAVSLHA + LRN LVP++KKY
Sbjct: 186 NIMLDDFGYGLSKRRVTLSTAGVIPAMYELRKVSDVALAVSLHAPTDELRNVLVPLNKKY 245
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC Y R +T EY ML GIND+D HA +LI L++ K+NLIP
Sbjct: 246 PLKELMTACKEYFKEDKRRYVTMEYVMLAGINDSDQHAQQLIRLLKG----VRAKVNLIP 301
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPN+ S I F + LM +GI RK RG+ I+AACGQL G++
Sbjct: 302 FNPFPNTAYKRSDQPTIDRFRETLMRAGINAITRKTRGDAIDAACGQLVGEV 353
>gi|332305581|ref|YP_004433432.1| radical SAM family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410646698|ref|ZP_11357148.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola sp. 4H-3-7+YE-5]
gi|410133870|dbj|GAC05547.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 380
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 238/356 (66%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFRA Q+ KWI++ GVSDF++MT+L+ +LR+KLK +K
Sbjct: 13 NLLNFNRAGLREYFSSIGEKPFRADQVMKWIYQAGVSDFDQMTNLNKALREKLKMQCEVK 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+ +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 APEIAYQQGATDGTIKFALRLEGGQEVETVWIPDADRATLCVSSQVGCALECTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL+V EIIGQ+W R I + N KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 133 GFNRNLSVAEIIGQVW------RVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR+++VPI+KK
Sbjct: 187 MDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDTLRDEIVPINKK 246
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ S + +T EY ML+GIND+ A L ++ T KIN
Sbjct: 247 YPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLAD----TPSKIN 302
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI FAK+L + G+ V +RK RG+DI+AACGQL G ++
Sbjct: 303 LIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQLVGDVV 358
>gi|258545517|ref|ZP_05705751.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
gi|258519217|gb|EEV88076.1| Cfr family radical SAM enzyme [Cardiobacterium hominis ATCC 15826]
Length = 367
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 234/353 (66%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL DL + + GE PFRAKQL KWI+ V+DF+ MTDLS LR+KLKN ++
Sbjct: 6 NLFDLDREAMTAWFIDNGEKPFRAKQLLKWIYHERVTDFDAMTDLSKPLREKLKNIAELR 65
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++D+ + DGTRKWIF N IE VFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 66 FPTIIADKTASDGTRKWIFRYDCGNSIEAVFIPEDDRGTLCISSQAGCALACPFCSTGHA 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEII Q+W+ + L +++ R +TN+V+MGMGEPL+N+ + + A
Sbjct: 126 GFNRNLTTGEIIVQVWLAKDILNCDRH-----GNNRVVTNVVLMGMGEPLVNFNNVLPAT 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ DHA+GLS+R V LSTSGI+P I L + + LAVSLHA N+ LRN++VP++ +Y
Sbjct: 181 RLMMDDHAFGLSKRRVTLSTSGIVPAIHALREVTDLSLAVSLHAPNDELRNQIVPVNARY 240
Query: 242 PLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
L L+ ACH+Y+ ++ +H +T+EY ML +ND+ HA +L L+R KINLI
Sbjct: 241 GLAALLDACHQYVRHNGQHGGVTWEYVMLRDVNDSLEHARQLAELLRG----IPGKINLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S CS+ S I F + L +G TIRK RG DI+AACGQL G+
Sbjct: 297 PFNAFPGSRYQCSRRSDILAFQRYLTENGYVATIRKTRGEDIDAACGQLVGQF 349
>gi|157374568|ref|YP_001473168.1| ribosomal RNA large subunit methyltransferase N [Shewanella
sediminis HAW-EB3]
gi|205829886|sp|A8FT67.1|RLMN_SHESH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
Length = 373
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/356 (50%), Positives = 233/356 (65%), Gaps = 16/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA QL KWI+ FG +DF+ M +++ LR KL +
Sbjct: 7 NLLDLDRKGLRALFTEMGEKPFRADQLMKWIYHFGETDFDAMNNINKVLRAKLSARCEVV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S Q S DGT K+ +V + +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISSYQKSADGTIKFAINVGQGQEVETVYIPEEDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW-VTEF-KLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNLTV EIIGQ+W V F ++E G+R ITN+VMMGMGEPLLN + I
Sbjct: 127 GFNRNLTVSEIIGQVWRVANFIGFQKET-------GERPITNVVMMGMGEPLLNLANVIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ ++L D + LS+R V +STSG++P +DKL V LAVS+HA N+ LR+ LVP++K
Sbjct: 180 AMDIMLDDFGFSLSKRRVTVSTSGVVPALDKLGDALDVALAVSIHAPNDELRDVLVPVNK 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYPL+E + RYI S R +T EY ML IND+ A EL LM+ T CKI
Sbjct: 240 KYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELAKLMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 296 NLIPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>gi|28199501|ref|NP_779815.1| hypothetical protein PD1624 [Xylella fastidiosa Temecula1]
gi|386083561|ref|YP_005999843.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417558738|ref|ZP_12209698.1| Fe-S-cluster redox enzyme [Xylella fastidiosa EB92.1]
gi|81585666|sp|Q87B36.1|RLMN_XYLFT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829942|sp|B2I7V5.2|RLMN_XYLF2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|28057616|gb|AAO29464.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|307578508|gb|ADN62477.1| hypothetical protein XFLM_02390 [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338178573|gb|EGO81558.1| Fe-S-cluster redox enzyme [Xylella fastidiosa EB92.1]
Length = 406
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/361 (46%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+L + ++ LGE +RA Q+ KWIH V+DF +MTD+ +LR +L+ +
Sbjct: 29 NLLELDREGLERFFEDVLGEKRYRAHQVMKWIHHRYVADFEQMTDVGKALRTRLQACAEV 88
Query: 62 KAPHIMSDQISFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ P ++ D+ S DGT KW+ + +KN IETV+IP+K R TLC+S+Q+GC +NC FCST
Sbjct: 89 RVPRVVFDKHSADGTHKWLLAMGTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCST 148
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 149 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 202
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGLS + V LSTSG++PMID+L+ E V LAVSLHA N+ LR +LVP++
Sbjct: 203 RAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLN 262
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ +C RY++ + R +TFEY ++ G+ND HA EL LMR+ ++
Sbjct: 263 KKYPIVELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKG 322
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S I+ F KIL+++ I +R+ RG+DI+AACGQL G++
Sbjct: 323 AAKVNLIPFNPFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV 382
Query: 354 L 354
+
Sbjct: 383 V 383
>gi|15837061|ref|NP_297749.1| hypothetical protein XF0459 [Xylella fastidiosa 9a5c]
gi|81623829|sp|Q9PG43.1|RLMN_XYLFA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9105305|gb|AAF83269.1|AE003896_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 406
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 242/361 (67%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+L+ + + LGE +RA Q+ KWIH VSDF +MTD+ +LR +L+ +
Sbjct: 29 NLLELNREGLERFFENVLGEKRYRAHQVMKWIHHRYVSDFEQMTDVGKALRARLQACAEV 88
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ P ++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+Q+GC +NC FCST
Sbjct: 89 RVPCVVFDKHSADGTHKWLLAMDTDSKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCST 148
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 149 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 202
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGLS + V LSTSG++PMID+L+ E V LAVSLHA N+ LR +LVP++
Sbjct: 203 RAMSVMRDDLGYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLN 262
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK----NKILT 293
KKYP+ EL+ +C RY++ + R +TFEY ++ G+ND HA EL+ LMR+ ++
Sbjct: 263 KKYPIAELMASCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELVKLMRQFDCAMQVKG 322
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S I+ F KIL+++ I +R+ RG+DI+AACGQL G++
Sbjct: 323 AAKVNLIPFNPFPGTYYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQV 382
Query: 354 L 354
+
Sbjct: 383 V 383
>gi|325919431|ref|ZP_08181457.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
19865]
gi|325550097|gb|EGD20925.1| 23S rRNA m(2)A-2503 methyltransferase [Xanthomonas gardneri ATCC
19865]
Length = 401
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 240/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLDL + + LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 24 NLLDLDREGLERFFADTLGEARYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEV 83
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P ++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 84 LVPTVVFDKPSTDGTHKWLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 143
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EI+GQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 144 ATQGFNRNLTTAEIVGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 197
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++PMID+L+ E V LAVSLHA+N+ LR LVP++
Sbjct: 198 RAMSVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALRESLVPLN 257
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
KKYP+ EL+ +C RY+ + R +TFEY ++ GIND HA +L LMR+ N + +
Sbjct: 258 KKYPIAELMESCARYLRGNKKRDSVTFEYTLMKGINDQPEHARQLARLMRQFDNAVQSKD 317
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+ K+NLIPFN FP + S + I+ F KIL+++ + +R+ RG+DI+AACGQL G++
Sbjct: 318 AGKVNLIPFNPFPGTRYERSGETEIRAFQKILLDAQVLTMVRRTRGDDIDAACGQLKGQV 377
Query: 354 L 354
+
Sbjct: 378 M 378
>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
Length = 383
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 235/355 (66%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + E GE FRA+Q+ KWIH GV DF MT+LS SLR KL ++
Sbjct: 15 NLLGLTRAQMEAFFAECGEKSFRAQQVMKWIHHHGVCDFEAMTNLSKSLRAKLSERACVR 74
Query: 63 APHIMSDQISFDGTRKWIFH-VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++S S DGTRKW+ ++ ++E+V IP+ +R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 75 PPEVVSRHDSADGTRKWLVRSIEGGLVESVLIPDGDRATLCVSSQVGCSLDCSFCSTGKQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LT +IIGQ+W L + R +TN+VMMGMGEPLLN+ + + A+
Sbjct: 135 GFERDLTASDIIGQVW-----LAIDSFDAFQPGKDRVVTNVVMMGMGEPLLNFDAVVSAM 189
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D AYGLS+R V LSTSG++P +DKLA+ V LAVSLHA N+ LRN+LVPI+KKY
Sbjct: 190 DLMMDDLAYGLSKRRVTLSTSGVVPALDKLAEVSCVSLAVSLHAPNDALRNQLVPINKKY 249
Query: 242 PLKELILACHRYITY--SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ EL+ + RY+ + ++T EY ++ G+ND HA EL L++ CKINL
Sbjct: 250 PIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELAVLLKN----FPCKINL 305
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP S+ + + F ++L+++G VT+R RG+DI+AACGQL G ++
Sbjct: 306 IPFNAFPGSSYQRPSGNAVSRFWQVLIDAGFIVTVRTTRGDDISAACGQLVGDVV 360
>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
Length = 386
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++++ + + LGE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 21 NLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQVAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGEQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLNVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVNNVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L ++ V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLHAPNDEIRDEIVPINKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + ++Y+ S + +T EY ML IND HA +L +++ T CKINL
Sbjct: 255 NIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQLAKVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G VTIRK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAACGQLAGDVI 365
>gi|416058312|ref|ZP_11580467.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|347999836|gb|EGY40649.1| ribosomal RNA large subunit methyltransferase N [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
Length = 364
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/353 (49%), Positives = 236/353 (66%), Gaps = 13/353 (3%)
Query: 5 LDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAP 64
++L+ + + ELGE PFRA QL KWI+ F +F+ MT+L+ LR+KLK IKAP
Sbjct: 1 MNLTRAQMREFFAELGEKPFRADQLVKWIYHFSEDNFDNMTNLNKQLREKLKTMAEIKAP 60
Query: 65 HIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFV 124
+ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF
Sbjct: 61 EVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQQGFN 120
Query: 125 RNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKL 183
RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+++
Sbjct: 121 RNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVPAMEI 174
Query: 184 ILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPL 243
+L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++KKY +
Sbjct: 175 MLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNKKYNI 234
Query: 244 KELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
K LI + +RY++ S + +T EY ML IND HA +L +++ T CKINLIP
Sbjct: 235 KTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAEVLKN----TPCKINLIP 290
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 291 WNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 343
>gi|429091189|ref|ZP_19153877.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
gi|429097418|ref|ZP_19159524.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426283758|emb|CCJ85637.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426744313|emb|CCJ79990.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
Length = 388
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQEMREFFKTLGEKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|77164417|ref|YP_342942.1| hypothetical protein Noc_0900 [Nitrosococcus oceani ATCC 19707]
gi|254434279|ref|ZP_05047787.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
gi|123744359|sp|Q3JCN4.1|RLMN_NITOC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|76882731|gb|ABA57412.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|207090612|gb|EDZ67883.1| radical SAM enzyme, Cfr family [Nitrosococcus oceani AFC27]
Length = 372
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/353 (49%), Positives = 234/353 (66%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L + LGE PFRA+Q+ +WIH+ V+DF+ MTDL+ SLR++L S I
Sbjct: 6 TNLLNLDRAGLDAFFTCLGEKPFRARQVLRWIHQRFVTDFSAMTDLNKSLRERLTESAVI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P I+ S DGT KW+ + N IETVFIPE +R TLCIS+Q+GC ++C FC+TG+
Sbjct: 66 SLPEIIKQHRSADGTHKWLLRMHGNNCIETVFIPEGDRGTLCISSQIGCILDCSFCATGK 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL V EIIGQLW+ L R+ +G+R ITN+VMMGMGEPL N+ + + A
Sbjct: 126 QGFNRNLAVSEIIGQLWLANKTLGRDP------KGERIITNVVMMGMGEPLANFNNVVTA 179
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D +YGLS R V LST+G++P +D+L CPV LAVSLHA + LR++LVP++KK
Sbjct: 180 MNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAVCPVNLAVSLHAPTDKLRDELVPLNKK 239
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL++L+ AC RY+ R +TFEY ML G+ND+ HA L+ L+ K+NLI
Sbjct: 240 YPLQDLLSACRRYVAGDRRRAVTFEYVMLAGVNDSLPHARALLRLL----RGLPAKVNLI 295
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN F S S + I F + L+ GI RK RG+DI AACGQL+G++
Sbjct: 296 PFNPFSGSVYRRSDAATIDRFREELLRGGIMTVTRKTRGDDIAAACGQLAGRV 348
>gi|387773831|ref|ZP_10129116.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
gi|386903652|gb|EIJ68459.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
Length = 386
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++++ + + LGE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 21 NLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNFDNMSNINKILREKLKQVAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGEQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLNVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVNNVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L + V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDALRDKIDVALAISLHAPNDEIRDEIVPINKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ LI + +RY+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 255 NMEMLIDSVNRYLEVSNANHGKVTIEYVMLDHVNDEVDHAHQLAKVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G VTIRK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNSRVDRFQKALMEYGFTVTIRKTRGDDIDAACGQLAGDVI 365
>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 388
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KELGE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKELGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|429101334|ref|ZP_19163308.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|426287983|emb|CCJ89421.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
Length = 388
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQEMREFFKTLGEKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|350552153|ref|ZP_08921359.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
gi|349795018|gb|EGZ48824.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
Length = 390
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 161/354 (45%), Positives = 231/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL ++ + + + L E PFRA Q+ KWIH+ G D +MTDL+ +LR +L I+
Sbjct: 21 NLLGMTQAELGAFFQSLEEKPFRAVQVMKWIHQRGCDDPAQMTDLAKTLRARLPQVACIR 80
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ Q + DGTRKW+ + N +E VFIPE+ R TLC+STQVGCA+ C FC+T RQ
Sbjct: 81 APEVLLAQTARDGTRKWLLGLADGNAVEMVFIPEQGRGTLCVSTQVGCALQCSFCATARQ 140
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EII QLW+ L+ E R I+N+V+MGMGEPLLN+++++ A+
Sbjct: 141 GFNRNLSSAEIIAQLWLASRVLQPEGG------QSRVISNVVLMGMGEPLLNFEASVAAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L DHAYGLS+R V +ST+G++P ID+L V LA+SLHA ++ LR++LVP+++KY
Sbjct: 195 ELMLHDHAYGLSKRRVTVSTAGVVPAIDRLRDTLDVSLAISLHAPDDALRDQLVPLNRKY 254
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++EL+ AC RY+ H IT EY +++G+ND A L L+R CK+NLI
Sbjct: 255 PIRELLAACKRYVREGRHHQRITVEYALINGVNDAPQQAQALARLLRD----LPCKLNLI 310
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN F S + + F +L +G IR+ RG++I+AACGQL GK++
Sbjct: 311 PFNPFAQSPYAAPTEAAVARFQDVLTQAGYTTVIRRTRGDEIDAACGQLVGKVM 364
>gi|374335136|ref|YP_005091823.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
gi|372984823|gb|AEY01073.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
Length = 372
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 173/354 (48%), Positives = 232/354 (65%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL E+GE PFRA Q+ KWI+ FG DF++MT+++ LR KLK I+
Sbjct: 7 NLLDLDRDGMRELFHEMGEKPFRADQVMKWIYHFGCDDFDQMTNINKVLRGKLKERAEIR 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I ++ S DGT KW V +ETV+IP+ +R TLC+S+QVGCA++C FCST +QG
Sbjct: 67 APEITVEKKSADGTIKWAMQVGDQEVETVYIPDGDRATLCVSSQVGCALDCKFCSTAQQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W ++ + G++ ITN+VMMGMGEPLLN + + A++
Sbjct: 127 FNRNLKVSEIIGQVWRAASRVGF-----VRDSGRKPITNVVMMGMGEPLLNLNNVVPAMR 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
L+L D+ +GLS+R V LSTSG++P +DKLA V LAVSLHA N+ LR++++PI+ KY
Sbjct: 182 LMLEDYGFGLSKRRVTLSTSGVVPALDKLADMIDVALAVSLHAPNDQLRSEIMPINDKYN 241
Query: 243 LKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ ELI + RY+ S + +T EY +L +ND HA EL L++ CKINLI
Sbjct: 242 IAELIASIRRYLAVSNANHGKVTIEYVLLDHVNDDMQHAHELAELLKD----LPCKINLI 297
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + NSRI F K+LM G VTIRK RG+DI+AACGQL G ++
Sbjct: 298 PFNPFPGNPYGKPSNSRIDRFNKVLMQYGNTVTIRKTRGDDIDAACGQLVGDVI 351
>gi|365850692|ref|ZP_09391154.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
gi|364566893|gb|EHM44571.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
Length = 388
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K++GE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKDMGEKPFRADQVMKWMYHYCSDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
Length = 378
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 241/357 (67%), Gaps = 17/357 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ + KE+GE PFRA Q+ KW++ F V DF++MT+L+ LR+KLK I+
Sbjct: 10 NLLNLNRDGMKAFFKEMGEKPFRADQVMKWLYHFCVDDFDEMTNLNKGLREKLKQCAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q S DGT K++ + +ETV+IPE++R TLC+S+QVGCA+ C FCSTG+Q
Sbjct: 70 APEIREQQQSSDGTIKFVMTLFDGQDVETVWIPERDRATLCVSSQVGCALECTFCSTGQQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK---RQITNIVMMGMGEPLLNYKSTI 178
GF RNL V EIIGQ+W N + + GK + +TN+VMMGMGEPLLN + +
Sbjct: 130 GFNRNLNVAEIIGQVWRV--------NQLLGAYGKTGIKPVTNVVMMGMGEPLLNLNNVV 181
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ L++ D+ +GLS+R V LSTSG++P +DKL ++ V LA+SLHA N+ LRN++VPI+
Sbjct: 182 PAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVMLAISLHAPNDELRNEIVPIN 241
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KKY +++ + + +Y+ S +H +T EY ML +ND+ A EL ++ T KI
Sbjct: 242 KKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELARTLKD----TPSKI 297
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN FP S+ S NSRI FAK+LM+ G V +RK RG+DI+AACGQL G ++
Sbjct: 298 NLIPFNPFPGSDYGRSSNSRIDRFAKVLMDYGFTVMVRKTRGDDIDAACGQLVGDVI 354
>gi|167854516|ref|ZP_02477297.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
gi|167854271|gb|EDS25504.1| hypothetical protein HPS_02019 [Haemophilus parasuis 29755]
Length = 386
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ + E+GE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 21 NLLNLNRQQMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKLKRIAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMWVGDQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL+V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 141 FNRNLSVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNMNNVIPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DK+ ++ V LA+SLHA N+ LRN+L+P++KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLHAPNDELRNELIPLNKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + ++Y+ S + +T EY ML +ND HA +L +++ T KINL
Sbjct: 255 NIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQLADVLKN----TPSKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G VT+RK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIHAACGQLAGDVI 365
>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
Length = 386
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 174/355 (49%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++++ + + LGE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 21 NLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQVAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGEQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLNVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVNNVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L ++ V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKIDVALAISLHAPNDEIRDEIVPINKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ LI + ++Y+ S + +T EY ML IND HA +L +++ T CKINL
Sbjct: 255 NIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQLAKVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K LM G VTIRK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNSRIDRFQKALMEYGFTVTIRKTRGDDIDAACGQLAGDVI 365
>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ATCC BAA-894]
gi|417791222|ref|ZP_12438697.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|424800635|ref|ZP_18226177.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|429116542|ref|ZP_19177460.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|429121143|ref|ZP_19181789.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449307260|ref|YP_007439616.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
gi|205829756|sp|A7MGV3.1|RLMN_CROS8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
gi|333954665|gb|EGL72492.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|423236356|emb|CCK08047.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|426319671|emb|CCK03573.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|426324427|emb|CCK12526.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449097293|gb|AGE85327.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
Length = 388
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|366160142|ref|ZP_09460004.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
TW09308]
gi|432373144|ref|ZP_19616182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
gi|430895150|gb|ELC17421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
Length = 384
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KELGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKELGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
Ep1/96]
gi|385785505|ref|YP_005816614.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
gi|387870486|ref|YP_005801856.1| hypothetical protein EPYR_01105 [Erwinia pyrifoliae DSM 12163]
gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
Length = 389
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF++MTD++ R +LK I+
Sbjct: 24 NLLDLNRQQMREFFASLGEKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRLKELAEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPEK+R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEQRSADGTIKWAIQVGGQQVETVYIPEKDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+++RN++VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDSIRNEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RYI S + +T EY ML IND+ +A EL +L++ T CKINL
Sbjct: 258 NIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELAALLKD----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 368
>gi|389840011|ref|YP_006342095.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
gi|387850487|gb|AFJ98584.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
Length = 388
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|432835471|ref|ZP_20069009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
gi|431384635|gb|ELG68681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
Length = 384
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAVKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
Length = 386
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL LS K +C LGE PFRA+QL KWIH GV +F+ MT++S +LR +L I
Sbjct: 18 TNLLGLSREKMEAFCVSLGEKPFRAQQLLKWIHHQGVDNFDAMTNISKALRSRLIQCAEI 77
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P I+S S DGTRKW + ++ETV IP+ +R TLC+S+QVGC+++C FCSTG+
Sbjct: 78 RPPEIVSQNDSVDGTRKWAIRIAGGGLVETVLIPDGDRGTLCVSSQVGCSLDCSFCSTGK 137
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF R+L+ EIIGQ+W L S KR ITN+VMMGMGEPLLN+ + + +
Sbjct: 138 QGFQRDLSAAEIIGQVW-----LAINSYDAFPSTNKRIITNVVMMGMGEPLLNFDNVVQS 192
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D YG+S+R V LSTSG++P +DKL V LA+SLHA N+ LR++LVPI+KK
Sbjct: 193 MSLMMDDFGYGISKRRVTLSTSGVVPALDKLGDVSEVSLAISLHAPNDELRSQLVPINKK 252
Query: 241 YPLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP+ EL+ AC RY + T EY ++ G+ND+ HA EL L++ CKIN
Sbjct: 253 YPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKELAKLLKD----FPCKIN 308
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN F S+ I F ++L NS I T+R RG+DI+AACGQL G++
Sbjct: 309 LIPFNPFSLSDYQRPSKKTIDQFWQVLSNSSIVTTVRNTRGDDIDAACGQLVGQV 363
>gi|254374354|ref|ZP_04989836.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
gi|151572074|gb|EDN37728.1| hypothetical protein FTDG_00521 [Francisella novicida GA99-3548]
Length = 370
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ IND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|387824635|ref|YP_005824106.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
gi|332184101|gb|AEE26355.1| radical SAM superfamily protein [Francisella cf. novicida 3523]
Length = 370
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRNKLKEKTEIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ IND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLKACKLYAEKGPHKHITFEYTLMEEINDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|430377501|ref|ZP_19431634.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
gi|429540638|gb|ELA08667.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
Length = 402
Score = 343 bits (881), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 180/363 (49%), Positives = 244/363 (67%), Gaps = 20/363 (5%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL +S K + + K L E PFRA Q+ KWI++FGV+DF +MT+LS L++KL N +
Sbjct: 26 TNLLGMSKTKLMEFFKNLDEKPFRATQVMKWIYQFGVTDFFEMTNLSKKLQEKLTNIACV 85
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN-----RNTLCISTQVGCAINCIF 115
P + + S DGTRKW+F V +++ETV IP + R TLCIS+QVGCA++C F
Sbjct: 86 IPPAVKYKEFSEDGTRKWVFEVAGGSLVETVLIPADDNKQFGRKTLCISSQVGCALDCSF 145
Query: 116 CSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ--ITNIVMMGMGEPLLN 173
CSTG+QGF RNLT EIIGQL+V + ++ KR+ +TN+VMMGMGEPLLN
Sbjct: 146 CSTGKQGFERNLTESEIIGQLFVA-----NQSYMEGVPAVKRENRVTNVVMMGMGEPLLN 200
Query: 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNK 233
Y+ + ++ L+L D +GLS+R V LSTSG++P + LA++ V LA+SLHA N+ LRN+
Sbjct: 201 YEPVVASMSLMLDDFGFGLSKRRVTLSTSGVVPKMYDLAKDIDVALAISLHAPNDKLRNE 260
Query: 234 LVPISKKYPLKELILACHRYI-TYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNK 290
LVPI+KKYPL ELI A Y+ +PRH +T EY ML +ND+D HA +L L++
Sbjct: 261 LVPINKKYPLAELIKAAKAYVYDENPRHKKHVTIEYVMLKDVNDSDEHAHQLAVLLQD-- 318
Query: 291 ILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLS 350
KINLIPFN F ++ S N+RI F+ IL N+G TIR+ RG+DI+AACGQL
Sbjct: 319 --LPSKINLIPFNPFAHAPYERSSNNRIHAFSGILNNAGFVCTIRQTRGDDIDAACGQLV 376
Query: 351 GKI 353
G++
Sbjct: 377 GQV 379
>gi|397164379|ref|ZP_10487834.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
gi|396093527|gb|EJI91082.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
Length = 388
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCSDDFDEMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND HA EL L++ T CKINL
Sbjct: 257 NIETFLGAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFCKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|89095332|ref|ZP_01168250.1| hypothetical protein MED92_00580 [Neptuniibacter caesariensis]
gi|89080407|gb|EAR59661.1| hypothetical protein MED92_00580 [Oceanospirillum sp. MED92]
Length = 371
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 244/353 (69%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LSP K + E+GE FRA Q+ KWIH+ G + F++MT++S +LR KL+ I+
Sbjct: 9 NLLGLSPAKMEAFFDEIGEKKFRATQVLKWIHQLGATSFDEMTNISKALRAKLEEVAEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ ++ S DGTRKW+ + +E V IP+ R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 69 EPEVLLEKTSKDGTRKWVIRTDSGSSVEAVLIPDGERKTLCVSSQVGCSLDCSFCSTGKQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT EIIGQL + +R + N+ +R ++N+V+MGMGEPL+N+ + + A+
Sbjct: 129 GFNSNLTTAEIIGQLRIA---IRSYG--EYNTTSQRVVSNVVLMGMGEPLMNFDNVVDAI 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+AY LS+R V LST+G++P IDKL + V LA+SLHA N++LR+ LVPI+K+Y
Sbjct: 184 TLMMEDNAYCLSKRRVTLSTAGVVPAIDKLREVTDVSLAISLHAPNDDLRDILVPINKRY 243
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+KEL+ AC+RY+ + + +IT EY +++G+ND HA +L+ ++R+ K+N+I
Sbjct: 244 PIKELVAACNRYLDNLNDKRVITVEYTLINGVNDKPEHAKQLLKILRR----MPSKLNII 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS RI F +I+++ GI T+R+ RG++I+AACGQL G++
Sbjct: 300 PFNPFPNSGYERPSEERILAFKEIIVHGGIVTTVRRTRGDEIDAACGQLVGQV 352
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 228/355 (64%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ + +LGE PFRA QL KWIH+ V DF++MTDL LR +L I
Sbjct: 18 ANLLNFDRQALQEWLAQLGEPPFRAVQLIKWIHQRRVFDFDRMTDLGKPLRARLAEIAEI 77
Query: 62 KAPHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P + D+ S DG RKW+ + N IETVFIPE R TLC+S+Q+GC + C FCSTG+
Sbjct: 78 RLPSAVFDRTSADGVRKWLLTLDGDNAIETVFIPEPGRGTLCVSSQLGCPLACTFCSTGQ 137
Query: 121 QGFVRNLTVGEIIGQL-WVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EI+GQL +VT+ + + G ++TN+V MGMGEPL N+ S +
Sbjct: 138 QGFNRNLTAAEIVGQLLFVTQ---------ALAADGVAGRVTNVVFMGMGEPLANFASVL 188
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A L++ +HAY LSRR V LSTSGI+P + +LA+ + LAVSLHA ++ LR++LVPI+
Sbjct: 189 KASNLMVDEHAYNLSRRRVTLSTSGIVPALYRLAEVSRISLAVSLHAPDDALRDELVPIN 248
Query: 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
+KYP+ EL+ AC Y+ +P H IT+EY ML +NDTD HA L L++ KIN
Sbjct: 249 RKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARLLKG----VPSKIN 304
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP + S R+ F +IL +G T+RK RG+DI+ ACGQL G++
Sbjct: 305 LIPFNAFPGAPYRSSPPQRVARFTEILQRAGYITTVRKTRGDDIDGACGQLVGQV 359
>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
Length = 388
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKATGVRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L L++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|383934221|ref|ZP_09987663.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704677|dbj|GAB57754.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 375
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 238/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ELGE PFRA Q+ KWI+ F + DF+KM++++ LR+KLK I+
Sbjct: 9 NLLDLTRAQMQAFFVELGEKPFRADQVMKWIYHFCIDDFDKMSNINKVLREKLKARCVIE 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP +++ Q S DGT K++ + +ETV+IPEK+R TLC+S+QVGCA++C FCST +Q
Sbjct: 69 APVVVTRQDSSDGTIKFVMGLSGGQEVETVWIPEKDRRTLCVSSQVGCALDCSFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNLTV EIIGQ+W R + I G + +TN+VMMGMGEPLLN + + A
Sbjct: 129 GFNRNLTVAEIIGQVW------RVAQLIGSYGDTGDKPVTNVVMMGMGEPLLNLNNVVPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L+L D +GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LRN+LVP+++K
Sbjct: 183 MELMLEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNELRNELVPVNRK 242
Query: 241 YPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + A RY+ S +T EY ML G+ND+ A EL ++ T KINL
Sbjct: 243 YPMEEFLAASRRYVANSKANDKVTVEYVMLEGVNDSMEQAHELAQALKD----TPSKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S S NSRI F K+L G V +RK RG+DI+AACGQL G ++
Sbjct: 299 IPFNPYPGSPYKRSSNSRIDRFNKVLQEYGFTVIVRKTRGDDIDAACGQLVGDVI 353
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDEMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|118497539|ref|YP_898589.1| radical SAM superfamily protein [Francisella novicida U112]
gi|195536235|ref|ZP_03079242.1| radical SAM enzyme, Cfr family [Francisella novicida FTE]
gi|208779338|ref|ZP_03246684.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
gi|254372900|ref|ZP_04988389.1| hypothetical protein FTCG_00471 [Francisella tularensis subsp.
novicida GA99-3549]
gi|205829766|sp|A0Q6H0.1|RLMN_FRATN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118423445|gb|ABK89835.1| radical SAM superfamily protein [Francisella novicida U112]
gi|151570627|gb|EDN36281.1| hypothetical protein FTCG_00471 [Francisella novicida GA99-3549]
gi|194372712|gb|EDX27423.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
novicida FTE]
gi|208745138|gb|EDZ91436.1| radical SAM enzyme, Cfr family [Francisella novicida FTG]
Length = 370
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
Length = 399
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KW++ + DF +MTD++ +LR+KL I+
Sbjct: 33 NLLDLNRKQMREFFINMGEKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLARVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + S+Q S DGT KW V ++ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVASEQRSTDGTIKWAIQVGGQLVETVYIPDGDRATLCVSSQVGCALECTFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAAKVAGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + A RYI+ S + +T EY ML IND HA EL ++ T CKINL
Sbjct: 267 NIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELAERLKN----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G V +RK RG+DI+AACGQL+G ++
Sbjct: 323 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACGQLAGDVI 377
>gi|187931627|ref|YP_001891611.1| radical SAM protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|205829765|sp|B2SGH6.1|RLMN_FRATM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|187712536|gb|ACD30833.1| radical SAM enzyme domain, Cfr family [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 370
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQNGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|395227152|ref|ZP_10405480.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|420366694|ref|ZP_14867527.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|421845430|ref|ZP_16278584.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|424731693|ref|ZP_18160275.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|391324001|gb|EIQ80616.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|394719335|gb|EJF24940.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|411773333|gb|EKS56892.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|422893831|gb|EKU33647.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|455641364|gb|EMF20535.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii GTC 09479]
Length = 388
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKATGVRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L L++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|386388745|ref|ZP_10073598.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385697259|gb|EIG27694.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 386
Score = 343 bits (880), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++++ + + LGE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 21 NLMNMTRPQMREFLASLGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQVAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V + IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMQVGEQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 141 FNRNLNVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVNNVVPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D L + V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDALRDKIDVALAISLHAPNDEIRDEIVPINKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ LI + ++Y+ S + +T EY ML +ND HA +L +++ T CKINL
Sbjct: 255 NIEMLINSVNKYLEVSNANHGKVTIEYVMLDHVNDEVDHAHQLAKVLKN----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G VTIRK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNSRVDRFQKALMEYGFTVTIRKTRGDDIDAACGQLAGDVI 365
>gi|408372889|ref|ZP_11170588.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
gi|407767241|gb|EKF75679.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
Length = 381
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 171/356 (48%), Positives = 237/356 (66%), Gaps = 16/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + E+GE FRA+Q+ KWIH F +MTD+ +LR+KL I+
Sbjct: 8 NLLGMSRPQMEAFFLEMGEKKFRAQQVLKWIHHHQADSFEQMTDVGKALRQKLSEVAEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + + IS DGTRKW+F + +ETVFIP+ R TLC+S+QVGCA++C FCSTG+Q
Sbjct: 68 GPDVEHESISRDGTRKWVFRLDTGGAVETVFIPDGRRGTLCVSSQVGCAVDCSFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R++T EIIGQ+W +N+ G+ ITN+VMMGMGEPLLNY + + A+
Sbjct: 128 GFQRDMTSAEIIGQVWQASRAFGPRRNL-----GEHPITNVVMMGMGEPLLNYDNVLTAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+ ++ + LSTSG+IP +D+L+ + V LAVSLHA N+ LRN+LVP+++KY
Sbjct: 183 RIMKDDLGYGIGKKRITLSTSGVIPKMDQLSDDLDVALAVSLHAPNDELRNELVPLNRKY 242
Query: 242 PLKELILACHRY---ITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
PLKEL+ AC RY IT+ RH IT EY ML +ND HA +L+ L+ N I KI
Sbjct: 243 PLKELMAACRRYSKNITH--RHNTITMEYVMLRDVNDKPEHARQLVKLL--NGI--PVKI 296
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP++ S+ S I F K L ++G+ T+R RG+DI+AACGQL G++
Sbjct: 297 NLIPFNPFPHAGYERSRKSDILEFHKYLNDNGLLTTVRTTRGDDIDAACGQLVGQV 352
>gi|429081719|ref|ZP_19144819.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
gi|426549611|emb|CCJ70860.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
Length = 388
Score = 343 bits (879), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRHEMREFFKTMGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|219872161|ref|YP_002476536.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
parasuis SH0165]
gi|219692365|gb|ACL33588.1| predicted Fe-S-cluster redox enzyme [Haemophilus parasuis SH0165]
Length = 386
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 175/355 (49%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ + E+GE PFRA QL KWI+ FG +F+ MT+++ LR+KLK IK
Sbjct: 21 NLLNLNRQQMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMTNINKVLREKLKRIAEIK 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 81 APEVAVEQRSADGTIKWAMWVGDQQIETVYIPKDDRATLCVSSQVGCALACTFCSTAQQG 140
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL+V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 141 FNRNLSVSEIIGQVW------RASKIIGNFGVTGIRPITNVVMMGMGEPLLNMNNVIPAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +DK+ ++ V LA+SLHA N+ LRN+L+P++KKY
Sbjct: 195 EIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQIDVALAISLHAPNDELRNELIPLNKKY 254
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K LI + ++Y+ S + +T EY ML +ND HA +L +++ T KINL
Sbjct: 255 NIKMLIDSVNKYLEVSNANHGKVTIEYVMLSHVNDDVEHAHQLADVLKN----TPSKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S N+RI F K LM G VT+RK RG+DI+AACGQL+G ++
Sbjct: 311 IPWNPFPEAPYAKSSNTRIDRFQKTLMEYGFTVTVRKTRGDDIDAACGQLAGDVI 365
>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|384256879|ref|YP_005400813.1| ribosomal RNA large subunit methyltransferase N [Rahnella aquatilis
HX2]
gi|380752855|gb|AFE57246.1| ribosomal RNA large subunit methyltransferase N [Rahnella aquatilis
HX2]
Length = 389
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KW++ + DF +MTD++ +LR+KL I+
Sbjct: 23 NLLDLNRKQMREFFINMGEKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLARVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + S+Q S DGT KW V ++ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVASEQRSTDGTIKWAIQVGGQLVETVYIPDGDRATLCVSSQVGCALECTFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVAGTRPITNVVMMGMGEPLLNLNNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINRKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + A RYI+ S + +T EY ML IND HA EL ++ T CKINL
Sbjct: 257 NIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELAERLKN----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G V +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACGQLAGDVI 367
>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|365143329|ref|ZP_09348249.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|378980078|ref|YP_005228219.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036000|ref|YP_005955913.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|402779528|ref|YP_006635074.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419764239|ref|ZP_14290479.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|419975700|ref|ZP_14491107.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|419981597|ref|ZP_14496871.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|419986790|ref|ZP_14501918.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|419992529|ref|ZP_14507484.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|419998752|ref|ZP_14513536.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|420004590|ref|ZP_14519225.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|420010336|ref|ZP_14524810.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|420016468|ref|ZP_14530759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|420022049|ref|ZP_14536222.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|420027472|ref|ZP_14541464.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|420033393|ref|ZP_14547198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|420039761|ref|ZP_14553389.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|420044934|ref|ZP_14558409.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|420050811|ref|ZP_14564106.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|420056372|ref|ZP_14569529.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|420061024|ref|ZP_14574017.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|420067735|ref|ZP_14580524.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|420072996|ref|ZP_14585628.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|420080373|ref|ZP_14592797.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|420082543|ref|ZP_14594839.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|421911304|ref|ZP_16341067.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421917099|ref|ZP_16346663.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424831843|ref|ZP_18256571.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932305|ref|ZP_18350677.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|425075470|ref|ZP_18478573.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082682|ref|ZP_18485779.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086105|ref|ZP_18489198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092764|ref|ZP_18495849.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428149849|ref|ZP_18997658.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428936471|ref|ZP_19009875.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|428942440|ref|ZP_19015434.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|449059461|ref|ZP_21737156.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
gi|205829779|sp|A6TCD6.1|RLMN_KLEP7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|339763128|gb|AEJ99348.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|363649671|gb|EHL88778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|364519489|gb|AEW62617.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397342365|gb|EJJ35527.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|397342883|gb|EJJ36038.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|397346794|gb|EJJ39906.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|397359708|gb|EJJ52399.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|397360780|gb|EJJ53452.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|397365269|gb|EJJ57894.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|397374848|gb|EJJ67162.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|397378915|gb|EJJ71118.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|397385452|gb|EJJ77548.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|397393278|gb|EJJ85040.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|397395056|gb|EJJ86770.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|397402169|gb|EJJ93780.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|397410403|gb|EJK01685.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|397410876|gb|EJK02146.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|397420629|gb|EJK11689.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|397427544|gb|EJK18312.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|397431931|gb|EJK22599.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|397438490|gb|EJK28988.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|397441407|gb|EJK31782.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|397452140|gb|EJK42214.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|397742822|gb|EJK90040.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|402540467|gb|AFQ64616.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|405594344|gb|EKB67759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600934|gb|EKB74099.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405605638|gb|EKB78667.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611990|gb|EKB84756.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806492|gb|EKF77743.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|410114840|emb|CCM83692.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410120816|emb|CCM89288.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414709280|emb|CCN30984.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426298281|gb|EKV60699.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|426298658|gb|EKV61047.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|427540205|emb|CCM93796.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448874746|gb|EMB09778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
Length = 388
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRSKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSTDGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKTTGVRPITNVVMMGMGEPLLNLNNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|415822426|ref|ZP_11511054.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|417188986|ref|ZP_12012544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|417207662|ref|ZP_12019883.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|417592852|ref|ZP_12243547.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|419198017|ref|ZP_13741403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|419204532|ref|ZP_13747712.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|419222526|ref|ZP_13765447.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|419887608|ref|ZP_14408182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|419894069|ref|ZP_14414009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|420087423|ref|ZP_14599393.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
gi|420097590|ref|ZP_14608885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|345337027|gb|EGW69460.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|378046574|gb|EHW08953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|378047653|gb|EHW10015.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|378065101|gb|EHW27251.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|386192531|gb|EIH81255.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|386196976|gb|EIH91184.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|388362476|gb|EIL26483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|388365275|gb|EIL29078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|394383752|gb|EJE61339.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|394393294|gb|EJE69983.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
Length = 384
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|410641928|ref|ZP_11352447.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|410138830|dbj|GAC10634.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 380
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/356 (48%), Positives = 237/356 (66%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFRA Q+ KWI++ G SDF++MT+L+ +LR+KLK +K
Sbjct: 13 NLLNFNRAGLREYFSSIGEKPFRADQVMKWIYQAGESDFDQMTNLNKALREKLKMQCEVK 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+ +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 APEIAYQQGATDGTIKFALRLEGGQEVETVWIPDADRATLCVSSQVGCALECTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL+V EIIGQ+W R I + N KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 133 GFNRNLSVAEIIGQVW------RVATTIGLSNDSAKRPITNVVMMGMGEPLLNLKNVVPA 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+L D A+GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR+++VPI+KK
Sbjct: 187 MDLMLDDLAFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDTLRDEIVPINKK 246
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP++E + RY+ S + +T EY ML+GIND+ A L ++ T KIN
Sbjct: 247 YPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALAKVLAD----TPSKIN 302
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI FAK+L + G+ V +RK RG+DI+AACGQL G ++
Sbjct: 303 LIPFNPYPGSPYSRSSNSRIDRFAKVLSSYGLMVVVRKTRGDDIDAACGQLVGDVV 358
>gi|392547027|ref|ZP_10294164.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
rubra ATCC 29570]
Length = 376
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 238/354 (67%), Gaps = 10/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFRA Q+ KWI+ FG+ +F+ M++++ LR KL+ I+
Sbjct: 9 NLLDLNREGMRELFASYGEKPFRADQVMKWIYHFGIDNFDDMSNINKKLRAKLQAECEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ + +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEISVRQQASDGTIKYALVLDGGQEVETVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ ++ + KR ITN+VMMGMGEPLLN + + A+
Sbjct: 129 GFNRNLKVSEIIGQVW----RVAKDIGLHDGDSTKRPITNVVMMGMGEPLLNINNVVPAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D A+GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR++LVPI+KKY
Sbjct: 185 ELMMDDWAFGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNPLRDELVPINKKY 244
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++E + AC RYI S + +T EY ML G+ND+ HA EL+ +++ T KINLI
Sbjct: 245 PIEEFLAACRRYIDGSKANKDVTIEYVMLQGVNDSTDHAHELVQVLKG----TPSKINLI 300
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 301 PFNPFPGNEYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVV 354
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|419921561|ref|ZP_14439613.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|432534838|ref|ZP_19771810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|388397512|gb|EIL58490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|431059593|gb|ELD68946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
Length = 384
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|444920988|ref|ZP_21240826.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507724|gb|ELV07898.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 371
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 166/353 (47%), Positives = 236/353 (66%), Gaps = 7/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL L+ + C+E+GE P+RA Q+ KW++ G S + MTD+S R+KLK+ + ++
Sbjct: 12 NLYGLTYPAMLELCEEIGEKPYRAMQIMKWVYHKGASSIDDMTDISKKTREKLKSRLVLE 71
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ D+ S DGT KW+ ++ N IE VFIPE +R TLC+S+QVGCA+ C FCST RQ
Sbjct: 72 LPKVLLDKPSNDGTHKWLIQLESGNAIEMVFIPEDDRGTLCVSSQVGCALECSFCSTARQ 131
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EI+GQ+ + + +L E + R++TN+V+MGMGEPLLN+ + A+
Sbjct: 132 GFNRNLSTAEIVGQVMLAK-RLLGEYEGDVQQSQNRRVTNVVLMGMGEPLLNFTNVTQAI 190
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L+D+ +GLS+R V LSTSG++P + +L + V LA+SLHA + LRN+LVPI+KKY
Sbjct: 191 DIMLNDYGFGLSKRRVTLSTSGVVPALYRLKEVSDVSLAISLHAPYDTLRNELVPINKKY 250
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PL EL+ AC YIT S + IT+EY ML +ND + A L L++ K+NLI
Sbjct: 251 PLAELLEACKAYITESSAYRKITWEYVMLKDVNDREEDAFALAKLIKD----IPGKVNLI 306
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS CS +RI F +IL G+ T+RK RG DI+AACGQL+G++
Sbjct: 307 PFNPFPNSGYECSSMNRINRFREILQRQGVVTTVRKTRGEDIDAACGQLAGRV 359
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|417673263|ref|ZP_12322718.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYERSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|429087664|ref|ZP_19150396.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
gi|426507467|emb|CCK15508.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
Length = 388
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|424772058|ref|ZP_18199173.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
gi|421939046|gb|EKT96577.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
Length = 384
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRDKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|359300528|ref|ZP_09186367.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
[parainfluenzae] CCUG 13788]
gi|402304723|ref|ZP_10823787.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sputorum HK 2154]
gi|400377130|gb|EJP30010.1| 23S rRNA m2A2503 methyltransferase [Haemophilus sputorum HK 2154]
Length = 389
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + ++GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 24 NLMNLTRQEMRELFAQMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQVAEIK 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAVEQRSADGTIKWAMQVGDQQIETVYIPEADRATLCVSSQVGCALACTFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 144 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LSTSG++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 198 EIMLDDFAYGLSKRRVTLSTSGVVPALDMMREKIDVALAISLHAPNDELRDEIMPINKKY 257
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 258 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 368
>gi|188533171|ref|YP_001906968.1| ribosomal RNA large subunit methyltransferase N [Erwinia
tasmaniensis Et1/99]
gi|254807181|sp|B2VE98.1|RLMN_ERWT9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|188028213|emb|CAO96071.1| Conserved hypothetical protein YfgB [Erwinia tasmaniensis Et1/99]
Length = 389
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 235/354 (66%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF++MTD++ R +LK I+
Sbjct: 24 NLLDLNRQQMREFFAGLGEKPFRADQVMKWIYHYCCDDFDEMTDINKVFRNRLKELAEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPEK+R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEQRSSDGTIKWAIQVGGQQVETVYIPEKDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + K I G+R ITN+VMMGMGEPLLN + + A++
Sbjct: 144 FNRNLRVSEIIGQVWRAAKIIGATKVI-----GQRPITNVVMMGMGEPLLNLTNVVPAME 198
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 199 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYN 258
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++ + + RYI S + +T EY ML IND+ +A EL +L+++ T CKINLI
Sbjct: 259 IETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELAALLKE----TPCKINLI 314
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 315 PWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 368
>gi|393764186|ref|ZP_10352798.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
gi|392604816|gb|EIW87715.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
Length = 375
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/358 (48%), Positives = 237/358 (66%), Gaps = 15/358 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL+ + + LGE PFRA Q+ KWI+ F V DF+KMT+++ LR LK
Sbjct: 7 VVNLLDLTRSQMQEFFVSLGEKPFRADQVMKWIYHFCVDDFDKMTNINKKLRDLLKARCV 66
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + + Q S DGT K++ ++ +ETV+IPEK+R TLC+S+QVGCA++C FCST
Sbjct: 67 IKAPVVATRQDSADGTIKFVMALEGGQEVETVWIPEKDRRTLCVSSQVGCALDCSFCSTA 126
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNI--KINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+V EIIGQ+W R I G++ +TN+VMMGMGEPLLN +
Sbjct: 127 QQGFNRNLSVSEIIGQVW-------RVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNV 179
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR++LVP+
Sbjct: 180 VPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPV 239
Query: 238 SKKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+KKYP++E + A RYI +S +T EY ML GIND+ A EL ++ T K
Sbjct: 240 NKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKD----TPSK 295
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
INLIPFN +P S S NSRI F K+L G V +RK RG+DI+AACGQL G ++
Sbjct: 296 INLIPFNPYPGSPYKRSSNSRIDRFNKVLQEHGFTVMVRKTRGDDIDAACGQLVGDVI 353
>gi|375109391|ref|ZP_09755639.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
gi|374570481|gb|EHR41616.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
Length = 375
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 239/358 (66%), Gaps = 15/358 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL+ + + LGE PFRA Q+ KWI+ + V DF+KMT+++ LR+ LK
Sbjct: 7 VVNLLDLTRSQMQEFFVSLGEKPFRADQVMKWIYHYCVDDFDKMTNINKKLRELLKARCV 66
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + + Q S DGT K++ ++ +ETV+IPEK+R TLC+S+QVGCA++C FCST
Sbjct: 67 IKAPVVATRQDSADGTIKFVMALEGGQEVETVWIPEKDRRTLCVSSQVGCALDCSFCSTA 126
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNI--KINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+V EIIGQ+W R I G++ +TN+VMMGMGEPLLN +
Sbjct: 127 QQGFNRNLSVSEIIGQVW-------RVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNV 179
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR++LVP+
Sbjct: 180 VPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPV 239
Query: 238 SKKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+KKYP++E + A RYI +S +T EY ML GIND+ A EL ++ T K
Sbjct: 240 NKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKD----TPSK 295
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
INLIPFN +P S S NSRI F K+L + G V +RK RG+DI+AACGQL G ++
Sbjct: 296 INLIPFNPYPGSPYKRSSNSRIDRFNKVLQDYGFTVMVRKTRGDDIDAACGQLVGDVI 353
>gi|319786998|ref|YP_004146473.1| Cfr family radical SAM protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465510|gb|ADV27242.1| radical SAM enzyme, Cfr family [Pseudoxanthomonas suwonensis 11-1]
Length = 418
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 239/361 (66%), Gaps = 15/361 (4%)
Query: 3 NLLDLSPLKFVNYCKE-LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+L + +E LGE +RA Q+ KWIH V+DF++MTDL +LR KL +
Sbjct: 37 NLLELDREGLERFFEETLGEKRYRAHQVMKWIHHRYVTDFDQMTDLGKALRAKLHAHAEV 96
Query: 62 KAPHIMSDQISFDGTRKWIFHVK---KNIIETVFIPEKNRNTLCISTQVGCAINCIFCST 118
P+++ D+ S DGT KW+ + KN IETV+IP+K R TLC+S+QVGC +NC FCST
Sbjct: 97 VVPNVVFDKPSADGTHKWLLAMGADGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCST 156
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
QGF RNLT EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + +
Sbjct: 157 ATQGFNRNLTTAEIIGQVWVAARHL---GNV---PHQQRRLTNVVMMGMGEPLMNFDNVV 210
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+ ++ D YGL+ + V LSTSG++P ID+L+ E V LAVSLHA N+ LR LVP++
Sbjct: 211 RAMSVMRDDLGYGLANKRVTLSTSGLVPQIDRLSVESDVSLAVSLHAPNDALRETLVPLN 270
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK--NKILT-- 293
+KYP+ EL+ +C RY+ + R +TFEY ++ G+ND HA +L LMR+ N +
Sbjct: 271 RKYPIAELMASCARYLRANKKRESVTFEYTLMKGVNDQPEHARQLARLMRQFDNAVQARD 330
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S K+NLIPFN FP + S + I+ F KIL++S + +R+ RG+DI+AACGQL G++
Sbjct: 331 SGKVNLIPFNPFPGTRYERSDEATIRAFQKILLDSQVLTMVRRTRGDDIDAACGQLKGQV 390
Query: 354 L 354
+
Sbjct: 391 M 391
>gi|365971621|ref|YP_004953182.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
gi|365750534|gb|AEW74761.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSADGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ATCC 35469]
gi|422806473|ref|ZP_16854905.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|424815430|ref|ZP_18240581.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
gi|254807182|sp|B7LKC1.1|RLMN_ESCF3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
Length = 384
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
Ss046]
gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
Sb227]
gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UTI89]
gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
gi|117624746|ref|YP_853659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O1]
gi|157157838|ref|YP_001463839.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E24377A]
gi|170019200|ref|YP_001724154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 8739]
gi|170082127|ref|YP_001731447.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
str. K-12 substr. DH10B]
gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SMS-3-5]
gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
CDC 3083-94]
gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SE11]
gi|215487867|ref|YP_002330298.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O127:H6 str. E2348/69]
gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI1]
gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
S88]
gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ED1a]
gi|218696144|ref|YP_002403811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
55989]
gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI39]
gi|222157223|ref|YP_002557362.1| hypothetical protein LF82_3091 [Escherichia coli LF82]
gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238901682|ref|YP_002927478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
BW2952]
gi|251785842|ref|YP_003000146.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
str. REL606]
gi|254289252|ref|YP_003055000.1| hypothetical protein ECD_02409 [Escherichia coli BL21(DE3)]
gi|260845147|ref|YP_003222925.1| enzyme [Escherichia coli O103:H2 str. 12009]
gi|260856611|ref|YP_003230502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. 11368]
gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|378712022|ref|YP_005276915.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|383179527|ref|YP_005457532.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
53G]
gi|386281584|ref|ZP_10059246.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386594714|ref|YP_006091114.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|386600495|ref|YP_006102001.1| 2-vinyl bacteriochlorophyllide hydratase [Escherichia coli IHE3034]
gi|386603443|ref|YP_006109743.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|386609919|ref|YP_006125405.1| radical SAM protein [Escherichia coli W]
gi|386615220|ref|YP_006134886.1| hypothetical protein UMNK88_3167 [Escherichia coli UMNK88]
gi|386620124|ref|YP_006139704.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|386625254|ref|YP_006144982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|386700537|ref|YP_006164374.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|386705782|ref|YP_006169629.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|386710407|ref|YP_006174128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|387608167|ref|YP_006097023.1| radical SAM superfamily protein [Escherichia coli 042]
gi|387613113|ref|YP_006116229.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|387617833|ref|YP_006120855.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|387622217|ref|YP_006129845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|387830414|ref|YP_003350351.1| hypothetical protein ECSF_2361 [Escherichia coli SE15]
gi|388478553|ref|YP_490745.1| hypothetical protein Y75_p2470 [Escherichia coli str. K-12 substr.
W3110]
gi|407470413|ref|YP_006783144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480925|ref|YP_006778074.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410481491|ref|YP_006769037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577238|ref|ZP_11434417.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|415778573|ref|ZP_11489619.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|415784568|ref|ZP_11492389.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|415803712|ref|ZP_11500691.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|415815169|ref|ZP_11506689.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|415828718|ref|ZP_11515190.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|415840204|ref|ZP_11521693.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|415844083|ref|ZP_11523887.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|415862465|ref|ZP_11535931.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|415874042|ref|ZP_11541184.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|416268576|ref|ZP_11642205.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|416283497|ref|ZP_11646839.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|416299209|ref|ZP_11652290.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|416335671|ref|ZP_11672364.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|416344049|ref|ZP_11677949.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|416898710|ref|ZP_11928256.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|417085917|ref|ZP_11953227.1| methyltransferase [Escherichia coli cloneA_i1]
gi|417115193|ref|ZP_11966329.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|417135332|ref|ZP_11980117.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|417140771|ref|ZP_11983882.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|417146392|ref|ZP_11987350.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|417155465|ref|ZP_11993594.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|417163553|ref|ZP_11998741.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|417175320|ref|ZP_12005116.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|417185071|ref|ZP_12010567.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|417221985|ref|ZP_12025425.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|417231146|ref|ZP_12032544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|417237952|ref|ZP_12035683.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|417251892|ref|ZP_12043657.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|417261683|ref|ZP_12049171.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|417269007|ref|ZP_12056367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|417272691|ref|ZP_12060040.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|417278205|ref|ZP_12065521.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|417280820|ref|ZP_12068120.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|417286506|ref|ZP_12073795.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|417290622|ref|ZP_12077903.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|417299867|ref|ZP_12087094.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|417309002|ref|ZP_12095843.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|417582020|ref|ZP_12232822.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|417597826|ref|ZP_12248461.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|417603171|ref|ZP_12253741.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|417613983|ref|ZP_12264441.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|417619101|ref|ZP_12269515.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|417624472|ref|ZP_12274771.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|417629816|ref|ZP_12280053.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|417635489|ref|ZP_12285701.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|417640270|ref|ZP_12290411.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|417663074|ref|ZP_12312655.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|417667919|ref|ZP_12317464.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|417683190|ref|ZP_12332540.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|417756774|ref|ZP_12404848.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|417806068|ref|ZP_12453014.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|417833812|ref|ZP_12480259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|417863144|ref|ZP_12508192.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|417943679|ref|ZP_12586926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|417975814|ref|ZP_12616611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|418041587|ref|ZP_12679806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|418267013|ref|ZP_12886456.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|418303966|ref|ZP_12915760.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|418941814|ref|ZP_13495126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|418957110|ref|ZP_13509034.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|418997594|ref|ZP_13545188.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|419003071|ref|ZP_13550595.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|419008754|ref|ZP_13556185.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|419014428|ref|ZP_13561776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|419019446|ref|ZP_13566752.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|419024946|ref|ZP_13572172.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|419029983|ref|ZP_13577144.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|419035279|ref|ZP_13582365.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|419040669|ref|ZP_13587697.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|419143467|ref|ZP_13688205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|419149288|ref|ZP_13693941.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|419154916|ref|ZP_13699477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|419160204|ref|ZP_13704709.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|419165320|ref|ZP_13709776.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|419171186|ref|ZP_13715072.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|419176148|ref|ZP_13719964.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|419181817|ref|ZP_13725430.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|419187264|ref|ZP_13730778.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|419192563|ref|ZP_13736015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|419210746|ref|ZP_13753823.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|419216607|ref|ZP_13759606.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|419227872|ref|ZP_13770723.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|419233595|ref|ZP_13776370.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|419238885|ref|ZP_13781600.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|419244362|ref|ZP_13787000.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|419250173|ref|ZP_13792752.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|419255999|ref|ZP_13798512.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|419262309|ref|ZP_13804723.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|419268253|ref|ZP_13810605.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|419273750|ref|ZP_13816045.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|419279050|ref|ZP_13821296.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|419285217|ref|ZP_13827388.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|419290445|ref|ZP_13832537.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|419295839|ref|ZP_13837882.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|419301234|ref|ZP_13843233.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|419307362|ref|ZP_13849261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|419312372|ref|ZP_13854234.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|419317808|ref|ZP_13859610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|419323957|ref|ZP_13865650.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|419329946|ref|ZP_13871550.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|419335579|ref|ZP_13877104.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|419340956|ref|ZP_13882420.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|419346164|ref|ZP_13887538.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|419350624|ref|ZP_13891961.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|419356047|ref|ZP_13897304.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|419361141|ref|ZP_13902358.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|419366035|ref|ZP_13907196.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|419371001|ref|ZP_13912120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|419376450|ref|ZP_13917474.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|419381786|ref|ZP_13922736.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|419387130|ref|ZP_13928008.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|419392635|ref|ZP_13933442.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|419397620|ref|ZP_13938388.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|419402962|ref|ZP_13943686.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|419408081|ref|ZP_13948770.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|419413671|ref|ZP_13954323.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|419701361|ref|ZP_14228962.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|419803528|ref|ZP_14328698.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|419810226|ref|ZP_14335108.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|419865991|ref|ZP_14388362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|419872747|ref|ZP_14394772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|419878645|ref|ZP_14400109.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|419885683|ref|ZP_14406371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|419899550|ref|ZP_14419053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|419906599|ref|ZP_14425489.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|419914745|ref|ZP_14433133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|419920343|ref|ZP_14438461.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|419931193|ref|ZP_14448781.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|419939154|ref|ZP_14455955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|419947494|ref|ZP_14463840.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|419950859|ref|ZP_14467064.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|420105077|ref|ZP_14615658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|420111510|ref|ZP_14621341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|420113629|ref|ZP_14623350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|420119922|ref|ZP_14629165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|420124623|ref|ZP_14633470.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|420134514|ref|ZP_14642619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|420326674|ref|ZP_14828425.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|420337236|ref|ZP_14838802.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|420348433|ref|ZP_14849819.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|420353933|ref|ZP_14855033.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|420359717|ref|ZP_14860687.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|420363922|ref|ZP_14864805.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|420381539|ref|ZP_14880986.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|420386570|ref|ZP_14885919.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|420392263|ref|ZP_14891514.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|421683601|ref|ZP_16123394.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|421774685|ref|ZP_16211297.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|422333549|ref|ZP_16414559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|422351899|ref|ZP_16432704.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|422358132|ref|ZP_16438793.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|422367766|ref|ZP_16448192.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|422377482|ref|ZP_16457721.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|422380266|ref|ZP_16460445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|422752155|ref|ZP_16806059.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|422755899|ref|ZP_16809723.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|422761951|ref|ZP_16815708.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|422767166|ref|ZP_16820893.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|422771579|ref|ZP_16825268.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|422777776|ref|ZP_16831428.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|422780582|ref|ZP_16833367.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|422787134|ref|ZP_16839873.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|422792447|ref|ZP_16845147.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|422799830|ref|ZP_16848329.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|422819331|ref|ZP_16867542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|422830004|ref|ZP_16878166.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|422835597|ref|ZP_16883651.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|422837412|ref|ZP_16885385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|422972902|ref|ZP_16975514.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|422988643|ref|ZP_16979416.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|422995535|ref|ZP_16986299.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|423000680|ref|ZP_16991434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|423004352|ref|ZP_16995098.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|423010852|ref|ZP_17001586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|423020080|ref|ZP_17010789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|423025246|ref|ZP_17015943.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|423031066|ref|ZP_17021754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|423038892|ref|ZP_17029566.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044012|ref|ZP_17034679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045740|ref|ZP_17036400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054279|ref|ZP_17043086.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061254|ref|ZP_17050050.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423704104|ref|ZP_17678529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|423706637|ref|ZP_17681020.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|424754455|ref|ZP_18182369.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424764628|ref|ZP_18192047.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|425115994|ref|ZP_18517793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|425120759|ref|ZP_18522455.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|425273667|ref|ZP_18665078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|425278918|ref|ZP_18670156.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|425284212|ref|ZP_18675250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|425289655|ref|ZP_18680495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|425301372|ref|ZP_18691263.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|425306247|ref|ZP_18695949.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|425380693|ref|ZP_18764710.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|425423361|ref|ZP_18804529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|427805698|ref|ZP_18972765.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|427810194|ref|ZP_18977259.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|429720107|ref|ZP_19255036.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772008|ref|ZP_19304029.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429776953|ref|ZP_19308929.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785680|ref|ZP_19317576.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429791570|ref|ZP_19323425.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429792418|ref|ZP_19324268.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429798994|ref|ZP_19330793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429807507|ref|ZP_19339232.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429812407|ref|ZP_19344091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429817928|ref|ZP_19349567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429823140|ref|ZP_19354735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429904515|ref|ZP_19370494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908653|ref|ZP_19374617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914524|ref|ZP_19380472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919554|ref|ZP_19385486.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925374|ref|ZP_19391288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929311|ref|ZP_19395213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935850|ref|ZP_19401736.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941530|ref|ZP_19407404.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944210|ref|ZP_19410073.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951769|ref|ZP_19417615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955118|ref|ZP_19420950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432358858|ref|ZP_19602078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|432363616|ref|ZP_19606780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|432370740|ref|ZP_19613825.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|432377727|ref|ZP_19620716.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|432382212|ref|ZP_19625155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|432388027|ref|ZP_19630914.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|432393029|ref|ZP_19635859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|432398473|ref|ZP_19641252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|432407598|ref|ZP_19650306.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|432417998|ref|ZP_19660596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|432422869|ref|ZP_19665413.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|432441983|ref|ZP_19684323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|432447089|ref|ZP_19689388.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|432450649|ref|ZP_19692911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|432466706|ref|ZP_19708793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|432471844|ref|ZP_19713888.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|432481867|ref|ZP_19723822.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|432486299|ref|ZP_19728214.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|432490285|ref|ZP_19732154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|432501009|ref|ZP_19742766.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|432514823|ref|ZP_19752045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|432527279|ref|ZP_19764371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|432544102|ref|ZP_19780944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|432549593|ref|ZP_19786359.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|432554564|ref|ZP_19791285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|432559732|ref|ZP_19796401.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|432564807|ref|ZP_19801387.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|432574617|ref|ZP_19811095.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|432576780|ref|ZP_19813237.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|432584732|ref|ZP_19821124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|432588799|ref|ZP_19825155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|432598523|ref|ZP_19834797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|432603148|ref|ZP_19839392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|432612382|ref|ZP_19848544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|432617659|ref|ZP_19853772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|432622748|ref|ZP_19858776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|432628141|ref|ZP_19864117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|432637759|ref|ZP_19873628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|432647045|ref|ZP_19882834.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|432656680|ref|ZP_19892383.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|432661728|ref|ZP_19897368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|432671622|ref|ZP_19907150.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|432675641|ref|ZP_19911097.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|432681127|ref|ZP_19916500.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|432686343|ref|ZP_19921638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|432692465|ref|ZP_19927692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|432695336|ref|ZP_19930534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|432699951|ref|ZP_19935104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|432705295|ref|ZP_19940394.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|432711537|ref|ZP_19946595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|432714257|ref|ZP_19949294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|432719665|ref|ZP_19954633.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|432723993|ref|ZP_19958910.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|432728574|ref|ZP_19963452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|432733259|ref|ZP_19968088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|432738008|ref|ZP_19972765.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|432742258|ref|ZP_19976977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|432746516|ref|ZP_19981181.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|432750966|ref|ZP_19985568.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|432755351|ref|ZP_19989899.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|432760341|ref|ZP_19994835.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|432765875|ref|ZP_20000313.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|432771469|ref|ZP_20005794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|432779421|ref|ZP_20013654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|432788423|ref|ZP_20022553.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|432793708|ref|ZP_20027792.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|432799667|ref|ZP_20033688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|432802712|ref|ZP_20036681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|432806697|ref|ZP_20040625.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|432810186|ref|ZP_20044079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|432816244|ref|ZP_20050027.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|432821869|ref|ZP_20055560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|432828007|ref|ZP_20061656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|432832574|ref|ZP_20066146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|432840309|ref|ZP_20073774.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|432852175|ref|ZP_20082217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|432869853|ref|ZP_20090446.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|432876262|ref|ZP_20094302.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|432895491|ref|ZP_20107211.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|432899594|ref|ZP_20110183.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|432905846|ref|ZP_20114646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|432920496|ref|ZP_20124131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|432928093|ref|ZP_20129346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|432935414|ref|ZP_20134768.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|432938859|ref|ZP_20137102.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|432948364|ref|ZP_20143520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|432956071|ref|ZP_20147890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|432962782|ref|ZP_20152314.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|432968596|ref|ZP_20157510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|432972676|ref|ZP_20161542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|432981896|ref|ZP_20170671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|432986233|ref|ZP_20174954.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|432991624|ref|ZP_20180288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|433005980|ref|ZP_20194408.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|433008576|ref|ZP_20196992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|433014799|ref|ZP_20203141.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|433024371|ref|ZP_20212352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|433029455|ref|ZP_20217311.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|433034343|ref|ZP_20222052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|433039522|ref|ZP_20227120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|433044069|ref|ZP_20231563.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|433048933|ref|ZP_20236280.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|433063957|ref|ZP_20250876.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|433073746|ref|ZP_20260397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|433078697|ref|ZP_20265225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|433083431|ref|ZP_20269887.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|433092891|ref|ZP_20279155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|433097338|ref|ZP_20283521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|433102057|ref|ZP_20288137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|433106782|ref|ZP_20292754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|433111758|ref|ZP_20297619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|433121076|ref|ZP_20306746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|433131059|ref|ZP_20316494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|433135727|ref|ZP_20321068.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|433145120|ref|ZP_20330261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|433154598|ref|ZP_20339536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|433164411|ref|ZP_20349146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|433169485|ref|ZP_20354110.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|433174419|ref|ZP_20358941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|433184221|ref|ZP_20368466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|433189257|ref|ZP_20373354.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|433194574|ref|ZP_20378560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|433199174|ref|ZP_20383071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|433204186|ref|ZP_20387953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|433322937|ref|ZP_20400326.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|442592524|ref|ZP_21010499.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599048|ref|ZP_21016783.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443618572|ref|YP_007382428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|450191399|ref|ZP_21891208.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
gi|450219669|ref|ZP_21896211.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|450246570|ref|ZP_21901007.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|549552|sp|P36979.1|RLMN_ECOLI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123084401|sp|Q1R8L6.1|RLMN_ECOUT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123147826|sp|Q0TEW8.1|RLMN_ECOL5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123728531|sp|Q32D45.1|RLMN_SHIDS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123755559|sp|Q31XX3.1|RLMN_SHIBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123773477|sp|Q3YZ35.1|RLMN_SHISS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829749|sp|A7ZPW0.1|RLMN_ECO24 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829750|sp|B1XAZ2.1|RLMN_ECODH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829752|sp|A1AE55.1|RLMN_ECOK1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829753|sp|B1IWE4.1|RLMN_ECOLC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829754|sp|B1LNH2.1|RLMN_ECOSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829888|sp|B2TXU2.1|RLMN_SHIB3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807172|sp|B7UGW3.1|RLMN_ECO27 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807173|sp|B7MI02.1|RLMN_ECO45 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807174|sp|B7LDA9.1|RLMN_ECO55 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807176|sp|B7NRG7.1|RLMN_ECO7I RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807177|sp|B7N304.1|RLMN_ECO81 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807178|sp|B7M7M1.1|RLMN_ECO8A RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807180|sp|B6I589.1|RLMN_ECOSE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|259491986|sp|C4ZX92.1|RLMN_ECOBW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
gi|1788865|gb|AAC75570.1| dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37
methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
[Escherichia coli 536]
gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333970625|gb|AEG37430.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|338769630|gb|EGP24409.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|339416064|gb|AEJ57736.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|340733456|gb|EGR62587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|340739363|gb|EGR73598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|341916433|gb|EGT66050.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|342364541|gb|EGU28641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|342930490|gb|EGU99212.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|344194583|gb|EGV48656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|345337791|gb|EGW70223.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|345350837|gb|EGW83112.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|345352349|gb|EGW84598.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|345362177|gb|EGW94334.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|345372563|gb|EGX04527.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|345375815|gb|EGX07762.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|345377433|gb|EGX09365.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|345387029|gb|EGX16858.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|345393272|gb|EGX23050.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|349738991|gb|AEQ13697.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|354862370|gb|EHF22808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|354867654|gb|EHF28076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|354868755|gb|EHF29168.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|354873651|gb|EHF34028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|354880335|gb|EHF40671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|354889124|gb|EHF49377.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|354893354|gb|EHF53558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|354894305|gb|EHF54501.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354897097|gb|EHF57258.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|354898461|gb|EHF58615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354912229|gb|EHF72230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354915185|gb|EHF75165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917419|gb|EHF77385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355350895|gb|EHG00090.1| methyltransferase [Escherichia coli cloneA_i1]
gi|359332826|dbj|BAL39273.1| predicted enzyme [Escherichia coli str. K-12 substr. MDS42]
gi|371597535|gb|EHN86356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|371607191|gb|EHN95769.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|371612209|gb|EHO00725.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|371615228|gb|EHO03656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|373245520|gb|EHP64988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|375322871|gb|EHS68604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|377843421|gb|EHU08461.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|377844272|gb|EHU09309.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|377846674|gb|EHU11681.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|377856396|gb|EHU21256.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|377859449|gb|EHU24280.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|377863730|gb|EHU28535.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|377873348|gb|EHU37985.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|377876983|gb|EHU41581.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|377879635|gb|EHU44207.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|377890709|gb|EHU55166.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|377992410|gb|EHV55557.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|377993980|gb|EHV57111.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|377995849|gb|EHV58960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|378007548|gb|EHV70517.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|378009772|gb|EHV72726.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|378015230|gb|EHV78127.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|378023450|gb|EHV86127.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|378029256|gb|EHV91872.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|378032120|gb|EHV94702.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|378037916|gb|EHW00438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|378053442|gb|EHW15742.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|378060798|gb|EHW22986.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|378073270|gb|EHW35323.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|378076654|gb|EHW38658.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|378083924|gb|EHW45855.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|378090298|gb|EHW52138.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|378094148|gb|EHW55950.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|378099465|gb|EHW61171.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|378104989|gb|EHW66637.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|378110904|gb|EHW72498.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|378116237|gb|EHW77770.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|378127751|gb|EHW89139.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|378130246|gb|EHW91616.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|378130561|gb|EHW91925.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|378140564|gb|EHX01787.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|378148345|gb|EHX09485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|378150850|gb|EHX11965.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|378158000|gb|EHX19031.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|378165033|gb|EHX25974.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|378168501|gb|EHX29405.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|378170262|gb|EHX31148.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|378181011|gb|EHX41688.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|378185612|gb|EHX46237.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|378187867|gb|EHX48478.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|378199885|gb|EHX60344.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|378200309|gb|EHX60765.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|378202788|gb|EHX63215.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|378212344|gb|EHX72667.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|378217595|gb|EHX77874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|378219173|gb|EHX79442.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|378227429|gb|EHX87601.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|378231657|gb|EHX91768.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|378236829|gb|EHX96868.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|378243741|gb|EHY03687.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|378247496|gb|EHY07415.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|378254460|gb|EHY14324.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|378259103|gb|EHY18919.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|380347562|gb|EIA35849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|383103950|gb|AFG41459.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|383392064|gb|AFH17022.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|383406099|gb|AFH12342.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|383475446|gb|EID67406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|384379757|gb|EIE37624.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|384473440|gb|EIE57481.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|385156948|gb|EIF18942.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|385537110|gb|EIF83993.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|385707220|gb|EIG44252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|385711602|gb|EIG48560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|386121723|gb|EIG70338.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386140612|gb|EIG81764.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|386153186|gb|EIH04475.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|386156104|gb|EIH12451.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|386163844|gb|EIH25639.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|386168554|gb|EIH35070.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|386172778|gb|EIH44792.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|386178012|gb|EIH55491.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|386183133|gb|EIH65884.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|386201787|gb|EII00778.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|386204145|gb|EII08656.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|386213730|gb|EII24155.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|386218741|gb|EII35224.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|386224810|gb|EII47145.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|386227812|gb|EII55168.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|386236391|gb|EII68367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|386239173|gb|EII76107.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|386245149|gb|EII86879.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|386249965|gb|EII96134.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|386252944|gb|EIJ02634.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|386256702|gb|EIJ12196.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|388333720|gb|EIL00337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|388334450|gb|EIL01041.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|388336172|gb|EIL02719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|388348459|gb|EIL14054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|388378693|gb|EIL41407.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|388379687|gb|EIL42334.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|388384875|gb|EIL46581.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|388385715|gb|EIL47386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|388398928|gb|EIL59739.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|388408645|gb|EIL68986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|388410502|gb|EIL70726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|388415965|gb|EIL75872.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|391250191|gb|EIQ09414.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|391260114|gb|EIQ19179.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|391268909|gb|EIQ27828.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|391277266|gb|EIQ36016.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|391281287|gb|EIQ39939.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|391283880|gb|EIQ42489.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|391293585|gb|EIQ51844.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|391299858|gb|EIQ57797.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|391304857|gb|EIQ62659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|391312030|gb|EIQ69653.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|394396699|gb|EJE73031.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398243|gb|EJE74431.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|394400229|gb|EJE76165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|394411219|gb|EJE85490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|394421284|gb|EJE94760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|394430590|gb|EJF02904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|397785065|gb|EJK95918.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|397899130|gb|EJL15506.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|404337957|gb|EJZ64405.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|406776653|gb|AFS56077.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053222|gb|AFS73273.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407066448|gb|AFS87495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408192944|gb|EKI18503.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|408200543|gb|EKI25720.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|408201389|gb|EKI26544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|408212764|gb|EKI37277.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|408213030|gb|EKI37534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|408227879|gb|EKI51448.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|408295564|gb|EKJ13869.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|408343253|gb|EKJ57657.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|408460433|gb|EKJ84212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|408567706|gb|EKK43760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|408568509|gb|EKK44540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|412963880|emb|CCK47806.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|412970373|emb|CCJ45019.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|421933102|gb|EKT90896.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421937594|gb|EKT95203.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|429348258|gb|EKY85028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429359004|gb|EKY95670.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429361335|gb|EKY97990.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429361642|gb|EKY98295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429364282|gb|EKZ00902.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429375131|gb|EKZ11669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429376288|gb|EKZ12817.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429378597|gb|EKZ15105.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429379461|gb|EKZ15961.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429391164|gb|EKZ27569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429405528|gb|EKZ41794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429406064|gb|EKZ42325.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409969|gb|EKZ46194.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413881|gb|EKZ50061.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429420659|gb|EKZ56784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429428831|gb|EKZ64906.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429432384|gb|EKZ68424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429436590|gb|EKZ72606.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429438795|gb|EKZ74788.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447164|gb|EKZ83088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429451417|gb|EKZ87308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429458075|gb|EKZ93913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430876278|gb|ELB99797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|430884544|gb|ELC07483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|430885821|gb|ELC08691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|430897747|gb|ELC19941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|430905530|gb|ELC27139.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|430907687|gb|ELC29185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|430914721|gb|ELC35816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|430918185|gb|ELC39224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|430929072|gb|ELC49593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|430938103|gb|ELC58346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|430943605|gb|ELC63712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|430966437|gb|ELC83845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|430973362|gb|ELC90330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|430979141|gb|ELC95927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|430992989|gb|ELD09348.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|430997586|gb|ELD13847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|431006389|gb|ELD21395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|431015508|gb|ELD29063.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|431019737|gb|ELD33131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|431028586|gb|ELD41630.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|431041209|gb|ELD51740.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|431063099|gb|ELD72356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|431073852|gb|ELD81490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|431079225|gb|ELD86195.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|431083229|gb|ELD89536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|431090952|gb|ELD96703.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|431092778|gb|ELD98459.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|431107064|gb|ELE11252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|431114454|gb|ELE17996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|431115486|gb|ELE18989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|431121132|gb|ELE24130.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|431130036|gb|ELE32145.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|431141722|gb|ELE43487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|431148556|gb|ELE49847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|431153647|gb|ELE54551.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|431158408|gb|ELE59007.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|431162752|gb|ELE63193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|431170499|gb|ELE70692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|431179700|gb|ELE79592.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|431190546|gb|ELE89945.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|431198687|gb|ELE97470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|431209904|gb|ELF07971.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|431213448|gb|ELF11322.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|431219857|gb|ELF17246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|431221063|gb|ELF18385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|431226395|gb|ELF23560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|431233424|gb|ELF29015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|431242177|gb|ELF36598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|431242927|gb|ELF37317.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|431248489|gb|ELF42683.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|431256107|gb|ELF49184.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|431261858|gb|ELF53881.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|431264585|gb|ELF56290.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|431273126|gb|ELF64224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|431274468|gb|ELF65525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|431281797|gb|ELF72696.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|431283949|gb|ELF74808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|431291054|gb|ELF81577.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|431295984|gb|ELF85714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|431301781|gb|ELF90982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|431307995|gb|ELF96285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|431310050|gb|ELF98243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|431313935|gb|ELG01890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|431326237|gb|ELG13599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|431336618|gb|ELG23726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|431339371|gb|ELG26433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|431342775|gb|ELG29746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|431347854|gb|ELG34731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|431354839|gb|ELG41565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|431362954|gb|ELG49532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|431363659|gb|ELG50212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|431367521|gb|ELG53998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|431371495|gb|ELG57204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|431374852|gb|ELG60197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|431388343|gb|ELG72079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|431399431|gb|ELG82838.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|431410439|gb|ELG93601.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|431419784|gb|ELH02124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|431421858|gb|ELH04070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|431425723|gb|ELH07791.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|431431917|gb|ELH13691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|431441698|gb|ELH22806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|431443058|gb|ELH24136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|431452197|gb|ELH32646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|431458342|gb|ELH38679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|431462845|gb|ELH43052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|431466922|gb|ELH46938.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|431470012|gb|ELH49936.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|431472656|gb|ELH52543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|431480814|gb|ELH60530.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|431491205|gb|ELH70812.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|431495706|gb|ELH75292.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|431499127|gb|ELH78308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|431513678|gb|ELH91760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|431523191|gb|ELI00335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|431529785|gb|ELI06480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|431534432|gb|ELI10915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|431542507|gb|ELI17674.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|431549735|gb|ELI23811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|431550634|gb|ELI24623.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|431555375|gb|ELI29217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|431563710|gb|ELI36908.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|431580743|gb|ELI53300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|431587114|gb|ELI58495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|431595821|gb|ELI65808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|431601555|gb|ELI71071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|431609574|gb|ELI78891.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|431614919|gb|ELI84053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|431618336|gb|ELI87310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|431626490|gb|ELI95039.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|431627501|gb|ELI95903.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|431641776|gb|ELJ09510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|431645856|gb|ELJ13400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|431655655|gb|ELJ22686.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|431660749|gb|ELJ27612.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|431673120|gb|ELJ39350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|431686686|gb|ELJ52246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|431686833|gb|ELJ52389.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|431691631|gb|ELJ57089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|431705174|gb|ELJ69772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|431705318|gb|ELJ69915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|431715074|gb|ELJ79243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|431720133|gb|ELJ84167.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|431720559|gb|ELJ84586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|432348510|gb|ELL42960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|441607795|emb|CCP95946.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441652218|emb|CCQ02280.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443423080|gb|AGC87984.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|449316974|gb|EMD07070.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|449319217|gb|EMD09272.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|449319546|gb|EMD09595.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
Length = 384
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
Length = 364
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 162/354 (45%), Positives = 224/354 (63%), Gaps = 11/354 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L LGE PFRA Q+ +W+H G DF MT+LS +LR++L I
Sbjct: 8 TNLLGLDRPGLEGLFASLGEKPFRAGQVLQWLHAHGCEDFAAMTNLSKALRERLAQESQI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
AP + +D ++ DGTRKW+F + + IETV+IPE R TLC+S+QVGC +NC FC T R
Sbjct: 68 AAPQVQADHLASDGTRKWLFQLPGGSAIETVYIPETRRGTLCVSSQVGCQLNCSFCQTAR 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL V EI+GQ+W + + + ++ ITN+V MGMGEPLLN+ + + A
Sbjct: 128 QGFNRNLGVDEIVGQIWAAS------RLLPPHPAREKPITNVVFMGMGEPLLNFDNVVAA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L D AYGLS R V +STSG++PMID+L +ECPV LAVSLHA ++ LR +LVP++++
Sbjct: 182 IRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECPVALAVSLHAPDDALRAELVPLNRR 241
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ L+ AC RY+ R ITFEY +L G+ND A L L+ + K+NLI
Sbjct: 242 YPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKLLAR----VPSKVNLI 297
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N S + F L+ G+ T+RK RG+DI ACGQL+G++L
Sbjct: 298 PYNPVAGLPYATSPPQAVAQFRDELLRHGLVATVRKTRGDDIAGACGQLAGQVL 351
>gi|254369341|ref|ZP_04985353.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157122291|gb|EDO66431.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 370
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 234/352 (66%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +G+ F A+Q+ KWIHK GV DF+ MTDL +LR KLK+ I
Sbjct: 7 NLLGLNQKAIEDFFISIGKKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKDKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ ++S DGT KW+ V + +ETVFIPE+ R TLC+S+Q+GC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKVSKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQIGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|432863380|ref|ZP_20087427.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
gi|431403978|gb|ELG87238.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
Length = 384
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKATGVRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMGYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
Length = 384
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|392980211|ref|YP_006478799.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
gi|392326144|gb|AFM61097.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|292489050|ref|YP_003531937.1| hypothetical protein EAMY_2582 [Erwinia amylovora CFBP1430]
gi|292900179|ref|YP_003539548.1| hypothetical protein EAM_2478 [Erwinia amylovora ATCC 49946]
gi|428786010|ref|ZP_19003493.1| UPF0063 protein yfgB [Erwinia amylovora ACW56400]
gi|291200027|emb|CBJ47152.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291554484|emb|CBA22015.1| UPF0063 protein yfgB [Erwinia amylovora CFBP1430]
gi|312173205|emb|CBX81460.1| UPF0063 protein yfgB [Erwinia amylovora ATCC BAA-2158]
gi|426275405|gb|EKV53140.1| UPF0063 protein yfgB [Erwinia amylovora ACW56400]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DFN+MTD++ R +L+ I+
Sbjct: 23 NLLDLNRQQMREFFASLGEKPFRADQVMKWIYHYCCDDFNEMTDINKVFRNRLQELAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPEK+R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVAEEQRSADGTIKWAIQVGGQQVETVYIPEKDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RYI S + +T EY ML IND+ +A EL +L++ T CKINL
Sbjct: 257 NIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|397170950|ref|ZP_10494360.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
gi|396087424|gb|EJI85024.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
Length = 375
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 239/358 (66%), Gaps = 15/358 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL+ + + LGE PFRA Q+ KWI+ + V DF+KMT+++ LR+ LK
Sbjct: 7 VVNLLDLTRSQMQEFFVSLGEKPFRADQVMKWIYHYCVDDFDKMTNINKKLRELLKARCV 66
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + + Q S DGT K++ ++ +ETV+IPEK+R TLC+S+QVGCA++C FCST
Sbjct: 67 IKAPVVATRQDSADGTIKFVMALEGGQEVETVWIPEKDRRTLCVSSQVGCALDCSFCSTA 126
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNI--KINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+V EIIGQ+W R I G++ +TN+VMMGMGEPLLN +
Sbjct: 127 QQGFNRNLSVSEIIGQVW-------RVSQIIGSFGDTGEKPVTNVVMMGMGEPLLNLNNV 179
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR++LVP+
Sbjct: 180 VPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKIDVALAISLHAPNNALRDELVPV 239
Query: 238 SKKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+KKYP++E + A RYI +S +T EY ML GIND+ A EL ++ T K
Sbjct: 240 NKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAKALKD----TPSK 295
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
INLIPFN +P S S NSRI F K+L + G V +RK RG+DI+AACGQL G ++
Sbjct: 296 INLIPFNPYPGSPYKRSSNSRIDRFNKVLQDHGFTVMVRKTRGDDIDAACGQLVGDVI 353
>gi|383189011|ref|YP_005199139.1| 2-vinyl bacteriochlorophyllide hydratase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371587269|gb|AEX50999.1| 23S rRNA m2A2503 methyltransferase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 399
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KW++ + DF +MTD++ +LR+KL I+
Sbjct: 33 NLLDLNRKQMREFFINMGEKPFRADQVMKWMYHYCSDDFEQMTDINKALREKLARVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + S+Q S DGT KW V ++ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVASEQRSTDGTIKWAIQVGGQLVETVYIPDGDRATLCVSSQVGCALECTFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAAKVAGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + A RYI S + +T EY ML IND HA EL ++ T CKINL
Sbjct: 267 NIDTFLAAVERYIGKSNANQGRVTIEYVMLDHINDGTEHAHELAERLKN----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G V +RK RG+DI+AACGQL+G ++
Sbjct: 323 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTVIVRKTRGDDIDAACGQLAGDVI 377
>gi|238897947|ref|YP_002923627.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 393
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + K ++ ++GE PFRA Q+ KWI+ + DF+ MTD++ LR KL+ I+
Sbjct: 36 NLLDFNRQKLRDFFVKIGEKPFRADQIMKWIYHYCYDDFSLMTDINKQLRDKLQKIAEIR 95
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 96 APEVAKEQSSSDGTIKWAIKVGDQQVETVYIPESDRATLCVSSQVGCALECRFCSTAQQG 155
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL+V EIIGQ+W R K I + S+G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 156 FNRNLSVSEIIGQVW------RAAKIIGSLKSKGQRPITNVVMMGMGEPLLNINNVVPAM 209
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+LVPI++KY
Sbjct: 210 AIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNELVPINRKY 269
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ L+ A RY+T S + +T EY ML+ +ND+ A +L ++ T CKINL
Sbjct: 270 NIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQLADCLKN----TPCKINL 325
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP ++ S NSRI FAK+LM IRK RGNDI+AACGQL+G ++
Sbjct: 326 IPWNPFPGADYGRSSNSRIDRFAKVLMQYDFTTIIRKTRGNDIDAACGQLAGDVI 380
>gi|429105680|ref|ZP_19167549.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|429111265|ref|ZP_19173035.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
gi|426292403|emb|CCJ93662.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|426312422|emb|CCJ99148.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + K LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQAMREFFKTLGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|401677597|ref|ZP_10809571.1| RlmN Protein [Enterobacter sp. SST3]
gi|400215120|gb|EJO46032.1| RlmN Protein [Enterobacter sp. SST3]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSADGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|206580011|ref|YP_002237132.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae 342]
gi|288934092|ref|YP_003438151.1| Cfr family radical SAM protein [Klebsiella variicola At-22]
gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
gi|254807185|sp|B5XNL2.1|RLMN_KLEP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSTDGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKTTGVRPITNVVMMGMGEPLLNLNNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|385792913|ref|YP_005825889.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678238|gb|AEE87367.1| radical SAM superfamily protein [Francisella cf. novicida Fx1]
Length = 370
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ IND A +L++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEINDNLSDAEQLVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
ATCC BAA-895]
gi|205829699|sp|A8AD69.1|RLMN_CITK8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KELGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKELGEKPFRADQVMKWMYHYCSDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINRKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L L++ T CKINL
Sbjct: 257 NIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/361 (46%), Positives = 236/361 (65%), Gaps = 24/361 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS + ++ +LGE FRA+Q+ KW+H GV DF M++L LR+KL+ I
Sbjct: 18 NLLGLSRQQLEDFFTDLGEKRFRAQQVMKWMHHQGVIDFAAMSNLGKGLREKLETLATIT 77
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I Q S DGTRKW V ++E V IPE R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 78 PPEIADQQDSADGTRKWAVRVAGGALVEAVLIPEAGRATLCVSSQVGCSLDCKFCSTGKQ 137
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINS-----QGK-RQITNIVMMGMGEPLLNYK 175
GF R+LT EIIGQ+W + INS GK R +TN+VMMGMGEPLLN+
Sbjct: 138 GFQRDLTAAEIIGQVW-----------LAINSYSGWQSGKGRIVTNVVMMGMGEPLLNFD 186
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A+ L+ D AYGLS+R V LSTSG++P +D+LA+ V LAVSLHA N+ +RNK+V
Sbjct: 187 NVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRLAEFSDVSLAVSLHAPNDEIRNKIV 246
Query: 236 PISKKYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
PI+++YP+++L+ + YI + ++T EY +L G+ND HA EL +L++
Sbjct: 247 PINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELSTLLKD----F 302
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
CKINLIPFN FPNS + + F ++L+++G VT+R RG+DI+AACGQL G++
Sbjct: 303 PCKINLIPFNHFPNSGFDRPSGNAVSRFWQVLVDAGFIVTVRSTRGDDIDAACGQLVGEV 362
Query: 354 L 354
+
Sbjct: 363 V 363
>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CFT073]
gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|386630287|ref|YP_006150007.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|386635207|ref|YP_006154926.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|386640048|ref|YP_006106846.1| radical SAM protein [Escherichia coli ABU 83972]
gi|422364837|ref|ZP_16445347.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|432412690|ref|ZP_19655352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|432432766|ref|ZP_19675193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|432437249|ref|ZP_19679637.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|432457589|ref|ZP_19699771.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|432496585|ref|ZP_19738381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|432505328|ref|ZP_19747051.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|432524722|ref|ZP_19761849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|432569611|ref|ZP_19806121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|432593743|ref|ZP_19830058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|432608411|ref|ZP_19844595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|432652051|ref|ZP_19887804.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|432784442|ref|ZP_20018621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|432845479|ref|ZP_20078279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|432974678|ref|ZP_20163515.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|432996233|ref|ZP_20184819.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|433000804|ref|ZP_20189328.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|433059003|ref|ZP_20246046.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|433088210|ref|ZP_20274580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|433116416|ref|ZP_20302205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|433126086|ref|ZP_20311641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|433140154|ref|ZP_20325407.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|433150071|ref|ZP_20335089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|433208650|ref|ZP_20392324.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|433213434|ref|ZP_20397024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|442608263|ref|ZP_21023023.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
gi|81475264|sp|Q8FF55.1|RLMN_ECOL6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|355421186|gb|AER85383.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|355426106|gb|AER90302.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|430934545|gb|ELC54900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|430952134|gb|ELC71341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|430962580|gb|ELC80437.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|430981596|gb|ELC98323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|431023843|gb|ELD37038.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|431037678|gb|ELD48654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|431051173|gb|ELD60848.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|431099101|gb|ELE04402.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|431127071|gb|ELE29386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|431137355|gb|ELE39202.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|431189906|gb|ELE89323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|431328865|gb|ELG16169.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|431394335|gb|ELG77871.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|431488410|gb|ELH68045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|431505263|gb|ELH83885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|431508196|gb|ELH86470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|431568536|gb|ELI41509.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|431603987|gb|ELI73403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|431633237|gb|ELJ01518.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|431643598|gb|ELJ11289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|431659158|gb|ELJ26056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|431669865|gb|ELJ36230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|431729935|gb|ELJ93554.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|431734459|gb|ELJ97860.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|441710868|emb|CCQ09000.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
Length = 384
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|336246651|ref|YP_004590361.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|444355373|ref|YP_007391517.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|334732707|gb|AEG95082.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|443906203|emb|CCG33977.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 388
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKTTGVRPITNVVMMGMGEPLLNLNNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. Sakai]
gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
O157:H7 str. EC4024]
gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209400754|ref|YP_002271987.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4115]
gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. TW14359]
gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|387507882|ref|YP_006160138.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|387883711|ref|YP_006314013.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|416310003|ref|ZP_11656202.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|416321670|ref|ZP_11663518.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|416329944|ref|ZP_11669071.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|416775881|ref|ZP_11874617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|416809527|ref|ZP_11889129.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97]
gi|416820198|ref|ZP_11893687.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|416831018|ref|ZP_11898977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|419046194|ref|ZP_13593131.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|419052228|ref|ZP_13599099.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|419058263|ref|ZP_13605068.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|419063730|ref|ZP_13610457.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|419070628|ref|ZP_13616249.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|419081709|ref|ZP_13627157.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|419087564|ref|ZP_13632920.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|419093455|ref|ZP_13638740.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|419099354|ref|ZP_13644551.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|419105081|ref|ZP_13650210.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|419110541|ref|ZP_13655597.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|419115900|ref|ZP_13660916.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|419121471|ref|ZP_13666427.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|419126965|ref|ZP_13671849.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|419132531|ref|ZP_13677368.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|419137567|ref|ZP_13682362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|420270560|ref|ZP_14772918.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|420276519|ref|ZP_14778803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|420287930|ref|ZP_14790116.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|420293547|ref|ZP_14795663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|420299389|ref|ZP_14801438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|420305342|ref|ZP_14807336.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|420310397|ref|ZP_14812330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|420316262|ref|ZP_14818137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|421813504|ref|ZP_16249222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|421819319|ref|ZP_16254815.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|421825313|ref|ZP_16260671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|421832046|ref|ZP_16267333.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|423726228|ref|ZP_17700289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|424078605|ref|ZP_17815596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|424085070|ref|ZP_17821573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|424091479|ref|ZP_17827424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|424098101|ref|ZP_17833423.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|424104334|ref|ZP_17839115.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|424111006|ref|ZP_17845250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|424116945|ref|ZP_17850793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|424123127|ref|ZP_17856458.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|424129291|ref|ZP_17862207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|424135565|ref|ZP_17868037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|424142130|ref|ZP_17874026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|424148560|ref|ZP_17879944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|424154377|ref|ZP_17885341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|424250489|ref|ZP_17890904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|424328684|ref|ZP_17896816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|424450811|ref|ZP_17902526.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|424457011|ref|ZP_17908157.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|424463448|ref|ZP_17913896.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|424469788|ref|ZP_17919621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|424476313|ref|ZP_17925638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|424482066|ref|ZP_17931056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|424488226|ref|ZP_17936803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|424494790|ref|ZP_17942525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|424501596|ref|ZP_17948502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|424507843|ref|ZP_17954248.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|424515164|ref|ZP_17959858.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|424521384|ref|ZP_17965521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|424527277|ref|ZP_17971002.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|424533425|ref|ZP_17976784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|424539525|ref|ZP_17982477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|424545576|ref|ZP_17987991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|424551816|ref|ZP_17993684.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|424558002|ref|ZP_17999428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|424564348|ref|ZP_18005358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|424570481|ref|ZP_18011044.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|424576628|ref|ZP_18016712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|424582467|ref|ZP_18022121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|425099174|ref|ZP_18501913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|425105233|ref|ZP_18507559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|425111248|ref|ZP_18513175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|425127173|ref|ZP_18528350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|425132906|ref|ZP_18533763.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|425139413|ref|ZP_18539802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|425145207|ref|ZP_18545209.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|425151316|ref|ZP_18550937.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|425157179|ref|ZP_18556452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|425163538|ref|ZP_18562433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|425169278|ref|ZP_18567762.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|425175343|ref|ZP_18573472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|425181370|ref|ZP_18579076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|425187640|ref|ZP_18584923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|425194412|ref|ZP_18591191.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|425200888|ref|ZP_18597106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|425207270|ref|ZP_18603079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|425213029|ref|ZP_18608439.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|425219149|ref|ZP_18614126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|425225699|ref|ZP_18620176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|425231963|ref|ZP_18626012.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|425237882|ref|ZP_18631611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|425244097|ref|ZP_18637415.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|425250261|ref|ZP_18643207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|425256090|ref|ZP_18648618.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|425262350|ref|ZP_18654367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|425295781|ref|ZP_18685992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|425312487|ref|ZP_18701680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|425318481|ref|ZP_18707279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|425324549|ref|ZP_18712927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|425330914|ref|ZP_18718779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|425337090|ref|ZP_18724472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|425343432|ref|ZP_18730331.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|425349241|ref|ZP_18735718.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|425355535|ref|ZP_18741610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|425361498|ref|ZP_18747155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|425367680|ref|ZP_18752850.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|425374030|ref|ZP_18758680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|425386919|ref|ZP_18770485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|425393606|ref|ZP_18776721.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|425399705|ref|ZP_18782419.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|425405794|ref|ZP_18788025.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|425412184|ref|ZP_18793955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|425418505|ref|ZP_18799784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|425429766|ref|ZP_18810386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|428948186|ref|ZP_19020480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|428954282|ref|ZP_19026091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|428960247|ref|ZP_19031565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|428966871|ref|ZP_19037600.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|428972560|ref|ZP_19042911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|428979099|ref|ZP_19048935.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|428984910|ref|ZP_19054316.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|428990995|ref|ZP_19059996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|428996861|ref|ZP_19065470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|429003107|ref|ZP_19071244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|429009192|ref|ZP_19076719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|429015721|ref|ZP_19082626.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|429021557|ref|ZP_19088092.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|429027654|ref|ZP_19093669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|429033842|ref|ZP_19099378.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|429039900|ref|ZP_19105021.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|429045761|ref|ZP_19110487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|429051230|ref|ZP_19115801.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|429056604|ref|ZP_19120930.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|429062101|ref|ZP_19126128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|429068376|ref|ZP_19131854.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|429074324|ref|ZP_19137580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|429079518|ref|ZP_19142658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429827534|ref|ZP_19358588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429833895|ref|ZP_19364257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444926069|ref|ZP_21245372.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444931779|ref|ZP_21250824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444937229|ref|ZP_21256010.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444942860|ref|ZP_21261382.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444948272|ref|ZP_21266587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444953888|ref|ZP_21271988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444959413|ref|ZP_21277270.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444966218|ref|ZP_21283760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444970544|ref|ZP_21287911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444975832|ref|ZP_21292960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444981215|ref|ZP_21298131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444986610|ref|ZP_21303395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444991925|ref|ZP_21308572.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444997231|ref|ZP_21313733.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|445002808|ref|ZP_21319201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|445008246|ref|ZP_21324489.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|445013341|ref|ZP_21329452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|445019206|ref|ZP_21335175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|445024662|ref|ZP_21340490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|445029997|ref|ZP_21345676.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|445035465|ref|ZP_21351001.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|445041089|ref|ZP_21356466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|445046312|ref|ZP_21361567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|445051831|ref|ZP_21366882.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|445057603|ref|ZP_21372465.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
gi|452971706|ref|ZP_21969933.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4009]
gi|205829862|sp|Q8XAA4.3|RLMN_ECO57 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807175|sp|B5Z0Y6.1|RLMN_ECO5E RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|374359876|gb|AEZ41583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|377892857|gb|EHU57297.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|377893024|gb|EHU57463.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|377904850|gb|EHU69128.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|377909370|gb|EHU73572.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|377911602|gb|EHU75771.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|377926339|gb|EHU90274.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|377929819|gb|EHU93707.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|377941470|gb|EHV05210.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|377941897|gb|EHV05634.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|377947564|gb|EHV11231.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|377956797|gb|EHV20340.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|377960009|gb|EHV23500.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|377966695|gb|EHV30106.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|377974021|gb|EHV37350.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|377975494|gb|EHV38815.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|377983984|gb|EHV47225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|386797169|gb|AFJ30203.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|390641137|gb|EIN20569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|390642796|gb|EIN22185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|390643584|gb|EIN22923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|390659994|gb|EIN37731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|390661281|gb|EIN38940.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|390663150|gb|EIN40675.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|390676911|gb|EIN52989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|390680262|gb|EIN56117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|390683370|gb|EIN59066.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|390695826|gb|EIN70337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|390700278|gb|EIN74589.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|390700773|gb|EIN75054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|390714072|gb|EIN86986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|390722140|gb|EIN94829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|390723591|gb|EIN96179.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|390726602|gb|EIN99040.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|390741778|gb|EIO12832.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|390742188|gb|EIO13204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|390744873|gb|EIO15714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|390757929|gb|EIO27399.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|390766958|gb|EIO36067.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|390768085|gb|EIO37133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|390768492|gb|EIO37523.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|390789669|gb|EIO57118.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|390789917|gb|EIO57346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|390795870|gb|EIO63147.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|390805318|gb|EIO72265.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|390807084|gb|EIO73986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|390815647|gb|EIO82175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|390825447|gb|EIO91366.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|390830043|gb|EIO95620.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|390830323|gb|EIO95870.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|390845594|gb|EIP09222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|390845920|gb|EIP09540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|390850195|gb|EIP13583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|390860947|gb|EIP23229.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|390864877|gb|EIP26946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|390870141|gb|EIP31700.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|390878151|gb|EIP39026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|390883252|gb|EIP43694.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|390892968|gb|EIP52538.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|390895493|gb|EIP54958.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|390899676|gb|EIP58912.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|390907626|gb|EIP66479.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|390918711|gb|EIP77100.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|390919983|gb|EIP78303.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|408064418|gb|EKG98900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|408066327|gb|EKH00786.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|408069884|gb|EKH04266.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|408079126|gb|EKH13254.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|408082592|gb|EKH16558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|408091003|gb|EKH24240.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|408097395|gb|EKH30294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|408103694|gb|EKH36024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|408108272|gb|EKH40289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|408114578|gb|EKH46104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|408120612|gb|EKH51588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|408127157|gb|EKH57661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|408137512|gb|EKH67213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|408139658|gb|EKH69255.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|408145800|gb|EKH74950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|408154833|gb|EKH83163.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|408159595|gb|EKH87648.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|408163444|gb|EKH91310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|408173198|gb|EKI00244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|408179707|gb|EKI06361.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|408217248|gb|EKI41524.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|408226812|gb|EKI50436.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|408238066|gb|EKI60901.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|408241903|gb|EKI64508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|408246285|gb|EKI68583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|408255119|gb|EKI76582.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|408258550|gb|EKI79810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|408265069|gb|EKI85824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|408273788|gb|EKI93828.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|408276720|gb|EKI96604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|408285847|gb|EKJ04830.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|408290654|gb|EKJ09358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|408307381|gb|EKJ24722.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|408307662|gb|EKJ24991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|408318662|gb|EKJ34865.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|408324647|gb|EKJ40573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|408325783|gb|EKJ41628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|408336060|gb|EKJ50859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|408345977|gb|EKJ60288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|408549146|gb|EKK26508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|408549414|gb|EKK26775.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|408550426|gb|EKK27755.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|408568610|gb|EKK44639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|408578467|gb|EKK53985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|408580912|gb|EKK56285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|408590986|gb|EKK65438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|408596065|gb|EKK70257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|408600699|gb|EKK74532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|408612240|gb|EKK85585.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|427204361|gb|EKV74638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|427206414|gb|EKV76627.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|427208158|gb|EKV78295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|427220501|gb|EKV89421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|427223956|gb|EKV92681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|427227705|gb|EKV96236.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|427241486|gb|EKW08917.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|427242015|gb|EKW09434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|427245645|gb|EKW12926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|427260560|gb|EKW26543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|427261065|gb|EKW27015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|427264277|gb|EKW29967.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|427276138|gb|EKW40717.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|427278860|gb|EKW43315.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|427282992|gb|EKW47230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|427291472|gb|EKW54874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|427298976|gb|EKW61966.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|427300130|gb|EKW63082.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|427311965|gb|EKW74135.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|427315043|gb|EKW77058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|427319322|gb|EKW81144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|427327390|gb|EKW88779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|427328850|gb|EKW90201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429253334|gb|EKY37824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429254905|gb|EKY39262.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444537779|gb|ELV17688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444539340|gb|ELV19106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444547149|gb|ELV25777.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444556973|gb|ELV34338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444557764|gb|ELV35089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444563079|gb|ELV40114.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444571589|gb|ELV48065.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444572591|gb|ELV49013.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444578977|gb|ELV54998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444592927|gb|ELV68165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444593198|gb|ELV68429.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444594770|gb|ELV69925.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444606370|gb|ELV80989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|444606775|gb|ELV81381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444615314|gb|ELV89520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|444622836|gb|ELV96780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|444623680|gb|ELV97597.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|444629354|gb|ELW03058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|444638195|gb|ELW11546.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|444640520|gb|ELW13779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|444644880|gb|ELW17975.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|444653968|gb|ELW26663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|444659371|gb|ELW31789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|444663956|gb|ELW36160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|444669407|gb|ELW41390.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
Length = 384
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
symbiont]
Length = 376
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL I+
Sbjct: 11 NLLDLNRQQMREFFVEMGEKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKLMQRAEIR 70
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 71 APEVAEEMRSSDGTIKWAIRVGDQLVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 130
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 131 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+ +VPI+KKY
Sbjct: 185 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDDIVPINKKY 244
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND+ HA EL +L+++ T CKINL
Sbjct: 245 NIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHELAALLKE----TPCKINL 300
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 301 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 355
>gi|334705279|ref|ZP_08521145.1| ribosomal RNA large subunit methyltransferase N [Aeromonas caviae
Ae398]
Length = 367
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL + ELGE PFRA Q+ KWI+ FG DF++M++++ +LR++LK I
Sbjct: 6 TNLLDLDRDAMRAFFVELGEKPFRADQIMKWIYHFGCDDFDQMSNVNKALRERLKAIAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP I +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 RAPEISREQRSADGTIKWALQVGDQEVETVYIPEADRATLCVSSQVGCALACTFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W R K + GKR ITN+VMMGMGEPLLN + + A+
Sbjct: 126 GFNRNLKVSEIIGQVW------RAAKVVG----GKRPITNVVMMGMGEPLLNLANVVPAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL++ D + +S+R V LSTSG++P +D L + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 176 KLMMDDFGFSISKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDALRSEIMPINDKY 235
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY +L IND HA EL ++++ T CKINL
Sbjct: 236 NIEAFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKE----TPCKINL 291
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + NSRI F+K+LM G+ V +RK RG+DI+AACGQL G+++
Sbjct: 292 IPFNPFPGNPFGKPSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLVGEVI 346
>gi|440286596|ref|YP_007339361.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046118|gb|AGB77176.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 388
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95.1|RLMN_ENT38 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK+ I+
Sbjct: 23 NLLDLNRQQMREFFLEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKDVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSADGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VP++KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPVNKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|401764742|ref|YP_006579749.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
gi|400176276|gb|AFP71125.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
Length = 388
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K++GE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKDMGEKPFRADQVMKWMYHYCSDNFDEMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSADGTIKWAIAVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|422031852|ref|ZP_16377997.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|427552549|ref|ZP_18928490.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|427569106|ref|ZP_18933208.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|427589368|ref|ZP_18938001.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|427612789|ref|ZP_18942863.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|427637095|ref|ZP_18947765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|427656844|ref|ZP_18952524.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|427662098|ref|ZP_18957436.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|427672719|ref|ZP_18962252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|414017601|gb|EKT01308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|414018305|gb|EKT01968.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|414031052|gb|EKT14130.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|414032534|gb|EKT15537.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|414035751|gb|EKT18608.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|414045819|gb|EKT28186.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|414046455|gb|EKT28782.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|414051403|gb|EKT33506.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|414058564|gb|EKT40224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
Length = 388
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|417122505|ref|ZP_11971763.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
gi|386147785|gb|EIG94225.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
Length = 384
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPCGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|427799644|ref|ZP_18967554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|414064192|gb|EKT45183.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
Length = 388
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKVPGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|392543678|ref|ZP_10290815.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
piscicida JCM 20779]
Length = 378
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 237/356 (66%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFRA Q+ KWI+ FG+ +F+ M++L+ LR +L+ IK
Sbjct: 9 NLLDLNREGMRELFASYGEKPFRADQVMKWIYHFGIDNFDDMSNLNKKLRARLQAECEIK 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q++ DGT K+ ++ +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEISVKQVASDGTIKYALLLEGGQEVETVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W T+ L + KR ITNIVMMGMGEPLLN + +
Sbjct: 129 GFNRNLKVSEIIGQVWRVATDIGLHK------GDSTKRPITNIVMMGMGEPLLNLNNVVP 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L++ D A+GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR+ LVPI+K
Sbjct: 183 AMELMMDDWAFGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNPLRDVLVPINK 242
Query: 240 KYPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KYP++E + AC RYI S + +T EY ML +ND+ HA EL+ +++ T KIN
Sbjct: 243 KYPIEEFLAACRRYIDGSKANKDVTIEYVMLQDVNDSTDHAHELVEVLKG----TPSKIN 298
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 299 LIPFNPFPGNEYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVV 354
>gi|422956104|ref|ZP_16968578.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
gi|371600402|gb|EHN89176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
Length = 384
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA ++ L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQMAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|417690641|ref|ZP_12339861.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
Length = 384
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGYQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|167627914|ref|YP_001678414.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|205829762|sp|B0U083.1|RLMN_FRAP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167597915|gb|ABZ87913.1| radical SAM superfamily protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 370
Score = 341 bits (875), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 233/352 (66%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK + I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKLKENAEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ ++ S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFNKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L + N + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSSAEVISQLWIAARTLSKN-----NGEHDFSVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA ++LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPTDSLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A +LI L+R ++ KINLIPF
Sbjct: 242 IDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLIELLRSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYRKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
gi|205829751|sp|A8A323.1|RLMN_ECOHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
Length = 384
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEVDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|409200956|ref|ZP_11229159.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
flavipulchra JG1]
Length = 378
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 237/356 (66%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFRA Q+ KWI+ FG+ +F+ M++L+ LR +L+ IK
Sbjct: 9 NLLDLNREGMRELFASYGEKPFRADQVMKWIYHFGIDNFDDMSNLNKKLRARLQAECEIK 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q++ DGT K+ ++ +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEISVKQVASDGTIKYALLLEGGQEVETVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W T+ L + KR ITNIVMMGMGEPLLN + +
Sbjct: 129 GFNRNLKVSEIIGQVWRVATDIGLHK------GDSTKRPITNIVMMGMGEPLLNLNNVVP 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L++ D A+GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR+ LVPI+K
Sbjct: 183 AMELMMDDWAFGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNPLRDVLVPINK 242
Query: 240 KYPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KYP++E + AC RYI S + +T EY ML +ND+ HA EL+ +++ T KIN
Sbjct: 243 KYPIEEFLAACRRYIDGSKANKDVTIEYVMLQDVNDSTDHAHELVQVLKG----TPSKIN 298
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 299 LIPFNPFPGNEYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVV 354
>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
Length = 372
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 232/354 (65%), Gaps = 10/354 (2%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD ++ + +ELGE FRA+Q KWIH+ G++D +KM++ S SLR +LK
Sbjct: 5 LKNLLDYDKVEMELFFQELGEKSFRAQQALKWIHQEGITDIDKMSNFSKSLRSRLKTIAQ 64
Query: 61 IKAPHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+ ++ S DGT+KW+ + N +ETVFIPE+ R TLC+S+QVGCA+NC FCST
Sbjct: 65 IDLPEIIIEKKSEDGTKKWLLRLTDANCVETVFIPERGRGTLCVSSQVGCALNCSFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLTV EIIGQ+W+ L R+ + + ++NIVMMGMGEPLLN+ S +
Sbjct: 125 QQGFNRNLTVAEIIGQVWLAVRCLSRD-----SLRHDHTVSNIVMMGMGEPLLNFDSVVK 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L++ D YG S+R V LSTSG++P + +L++ V LA+SLHA N+ LR++LVPI+K
Sbjct: 180 AMNLMMDDFGYGFSKRRVTLSTSGVVPALRRLSKASEVSLAISLHAPNDELRDRLVPINK 239
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ C Y R +T EY ML GIND HA +LI ++ + KINL
Sbjct: 240 KYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKILEGIPV----KINL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP + S I+ F IL+ +G+ RK RG DI+AACGQL G +
Sbjct: 296 IPFNPFPFARYRRSSQITIERFKSILVKAGLNTITRKTRGEDIDAACGQLVGYV 349
>gi|308050460|ref|YP_003914026.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
9799]
gi|307632650|gb|ADN76952.1| 23S rRNA m(2)A-2503 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 372
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 172/354 (48%), Positives = 233/354 (65%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L + E+GE PFRA Q+ KWI+ FG DF +MT+++ +LR KL I
Sbjct: 6 NLLNLDRKAMRAFFAEMGEKPFRADQVMKWIYHFGADDFEQMTNINKALRAKLAERAVIV 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I + Q S DGT K+ V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 APEISTSQHSSDGTIKFAIDVGNGQEVETVYIPESDRATLCVSSQVGCALECSFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQ+W ++ + +K N G+R I+N+VMMGMGEPLLN + + A+
Sbjct: 126 GFNRNLSVAEIIGQVW----RVAKYLGLK-NETGERPISNVVMMGMGEPLLNLSNVVPAM 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ LVP++KKY
Sbjct: 181 DIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDVLVPVNKKY 240
Query: 242 PLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + Y+T Y+ + +T EY ML IND+ A EL +M+ T CKINL
Sbjct: 241 NIETFLASVRTYLTKSYANKGRVTVEYVMLDHINDSTDQAHELAKVMKD----TPCKINL 296
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI FAK+LM G+ V +RK RG+DI+AACGQL G +
Sbjct: 297 IPFNPYPGSPYGKSSNSRIDRFAKVLMEYGMTVIVRKTRGDDIDAACGQLVGDV 350
>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
Length = 389
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD+ + + + GE PFRA Q+ KWI+ DF+ MTD++ LR KLK + I+
Sbjct: 24 NLLDMDRKQMRQFFSDTGEKPFRADQVMKWIYHHCYDDFDLMTDINKVLRNKLKQAAEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V + +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEIAQEQRSTDGTIKWAITVGEQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKVIGSLKSSGRRPITNVVMMGMGEPLLNLNNVIPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V LSTSG++P +DKL V LA+SLHA + +R+++VPI+KKY
Sbjct: 198 EIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RY+T S + +T EY ML+G+ND+ HA +L ++ T KINL
Sbjct: 258 NIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQLAECLKH----TPSKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI FAK+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPGAPYSRSSNSRIDRFAKVLMKYGFTTIVRKTRGDDIDAACGQLAGDVI 368
>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|422017490|ref|ZP_16364055.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|414105640|gb|EKT67197.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
Length = 399
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ELGE PFRA Q+ KWI+ + DF++MTD++ LR KLK I+
Sbjct: 34 NLLDLNRKQMREFFAELGEKPFRADQVMKWIYHYCFDDFDQMTDINKVLRAKLKEVAEIR 93
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 94 APEVADEQRSSDGTIKWAIKVGDQLVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 153
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 154 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 207
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++P +DKL V LA+SLHA +++R+++VPI+KKY
Sbjct: 208 EIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDDVRDEIVPINKKY 267
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + +RY+T S + +T EY ML IND+ A +L ++ T KINL
Sbjct: 268 NIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQLAECLKN----TPSKINL 323
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 324 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 378
>gi|300717954|ref|YP_003742757.1| Fe-S protein [Erwinia billingiae Eb661]
gi|299063790|emb|CAX60910.1| putative Fe-S containing enzyme [Erwinia billingiae Eb661]
Length = 389
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KW++ + DF++MTD++ R +LK I+
Sbjct: 24 NLLDLNRQQMREFFASMGEKPFRADQVMKWMYHYCCDDFDEMTDINKVFRNRLKEVAEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + ++Q S DGT KW V +ETV+IPEK+R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVATEQRSTDGTIKWAITVGGQQVETVYIPEKDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIIGASKITGTRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VP++KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPVNKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RYI S + +T EY ML +ND+ +A EL +L++ T CKINL
Sbjct: 258 NIETFLASVSRYIAKSNANQGRVTIEYVMLDHVNDSTDNAHELAALLKN----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|345300389|ref|YP_004829747.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
gi|345094326|gb|AEN65962.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
Length = 388
Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSADGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY ML +ND HA EL L++ T CKINL
Sbjct: 257 NIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
Length = 384
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMRVFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|334125110|ref|ZP_08499104.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|419958889|ref|ZP_14474947.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
gi|449474378|ref|XP_004154155.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|333387680|gb|EGK58874.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|388606192|gb|EIM35404.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
Length = 388
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY ML +ND HA EL L++ T CKINL
Sbjct: 257 NIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
Length = 388
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + KE+GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKEMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY ML +ND HA EL L++ T CKINL
Sbjct: 257 NIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|452123647|ref|YP_007473895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
gi|451912651|gb|AGF84457.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
Length = 388
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374981957|ref|ZP_09723279.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445942|ref|YP_005233574.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451265|ref|YP_005238624.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700426|ref|YP_005182383.1| hypothetical protein SL1344_2487 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378985084|ref|YP_005248239.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989905|ref|YP_005253069.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|379701754|ref|YP_005243482.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497213|ref|YP_005397902.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|417540943|ref|ZP_12192814.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|81594911|sp|Q8ZN52.1|RLMN_SALTY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|353661724|gb|EHD00962.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|380464034|gb|AFD59437.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
Length = 388
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|375002364|ref|ZP_09726704.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|375115433|ref|ZP_09760603.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|375120078|ref|ZP_09765245.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375124474|ref|ZP_09769638.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|378954139|ref|YP_005211626.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378958479|ref|YP_005215965.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|386592330|ref|YP_006088730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|409251192|ref|YP_006886994.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416426049|ref|ZP_11692668.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|416431782|ref|ZP_11695884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|416438159|ref|ZP_11699368.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|416443974|ref|ZP_11703374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|416450747|ref|ZP_11707773.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|416460671|ref|ZP_11714931.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|416471027|ref|ZP_11719080.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|416481236|ref|ZP_11723220.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416493203|ref|ZP_11727876.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|416498355|ref|ZP_11730204.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416506705|ref|ZP_11734847.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|416514798|ref|ZP_11738361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|416530920|ref|ZP_11745334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|416539116|ref|ZP_11749825.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|416546116|ref|ZP_11753671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|416552143|ref|ZP_11756872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|416560905|ref|ZP_11761460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|416571191|ref|ZP_11766523.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|416577256|ref|ZP_11769642.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|416583531|ref|ZP_11773344.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|416591355|ref|ZP_11778359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|416599607|ref|ZP_11783766.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|416603734|ref|ZP_11785595.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|416613829|ref|ZP_11792280.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|416620343|ref|ZP_11795682.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|416628617|ref|ZP_11799739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|416637684|ref|ZP_11803589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|416648943|ref|ZP_11809479.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|416662072|ref|ZP_11815732.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|416666825|ref|ZP_11817795.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|416677344|ref|ZP_11822238.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|416697135|ref|ZP_11828110.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|416707776|ref|ZP_11832816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|416711416|ref|ZP_11835196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|416720590|ref|ZP_11842224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|416722275|ref|ZP_11843268.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|416730102|ref|ZP_11848461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|416738011|ref|ZP_11853109.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|416750297|ref|ZP_11859691.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|416755652|ref|ZP_11862196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|416762658|ref|ZP_11866596.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|416770818|ref|ZP_11872148.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|417328050|ref|ZP_12113296.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|417342964|ref|ZP_12123639.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|417359948|ref|ZP_12134190.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417423420|ref|ZP_12160259.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|417469081|ref|ZP_12165516.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|417512615|ref|ZP_12176894.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|417519799|ref|ZP_12181855.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|418482578|ref|ZP_13051593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|418490208|ref|ZP_13056758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|418493543|ref|ZP_13060007.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|418498467|ref|ZP_13064882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|418504940|ref|ZP_13071292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|418506586|ref|ZP_13072916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|418525948|ref|ZP_13091927.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|418762279|ref|ZP_13318409.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|418766898|ref|ZP_13322969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|418770295|ref|ZP_13326317.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|418775717|ref|ZP_13331669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|418781348|ref|ZP_13337232.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|418782848|ref|ZP_13338703.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|418790860|ref|ZP_13346629.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|418792015|ref|ZP_13347764.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|418799204|ref|ZP_13354872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|418800818|ref|ZP_13356465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|418805483|ref|ZP_13361071.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|418814210|ref|ZP_13369730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|418818907|ref|ZP_13374371.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|418819222|ref|ZP_13374675.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|418830875|ref|ZP_13385834.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|418837560|ref|ZP_13392433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|418841940|ref|ZP_13396754.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|418843034|ref|ZP_13397838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|418850326|ref|ZP_13405043.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|418855649|ref|ZP_13410302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|418859511|ref|ZP_13414114.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|418861742|ref|ZP_13416294.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|418867652|ref|ZP_13422106.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|419729187|ref|ZP_14256147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|419735242|ref|ZP_14262125.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|419737762|ref|ZP_14264533.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|419742615|ref|ZP_14269287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|419751225|ref|ZP_14277649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|419787826|ref|ZP_14313531.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|419795431|ref|ZP_14321030.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|421357046|ref|ZP_15807359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|421361384|ref|ZP_15811648.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|421367137|ref|ZP_15817338.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|421372683|ref|ZP_15822831.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|421375739|ref|ZP_15825851.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|421381055|ref|ZP_15831111.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|421383737|ref|ZP_15833768.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|421388652|ref|ZP_15838640.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|421396299|ref|ZP_15846230.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|421401580|ref|ZP_15851455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|421402018|ref|ZP_15851882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|421408915|ref|ZP_15858712.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|421413709|ref|ZP_15863461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|421415483|ref|ZP_15865209.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|421423620|ref|ZP_15873275.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|421424832|ref|ZP_15874470.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|421429350|ref|ZP_15878947.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|421437194|ref|ZP_15886716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|421437850|ref|ZP_15887360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|421446290|ref|ZP_15895706.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|421449716|ref|ZP_15899098.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|421568827|ref|ZP_16014538.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|421576406|ref|ZP_16022005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|421581147|ref|ZP_16026694.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|421584179|ref|ZP_16029688.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|421884943|ref|ZP_16316147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|436622893|ref|ZP_20514792.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|436778287|ref|ZP_20521095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|436802866|ref|ZP_20525565.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|436811044|ref|ZP_20530040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|436817145|ref|ZP_20534227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|436845491|ref|ZP_20538818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|436853356|ref|ZP_20543316.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|436859555|ref|ZP_20547468.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|436863726|ref|ZP_20550021.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|436868438|ref|ZP_20553198.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|436882806|ref|ZP_20561431.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|436887164|ref|ZP_20563564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|436898919|ref|ZP_20570554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|436901142|ref|ZP_20572066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|436909403|ref|ZP_20576127.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|436921338|ref|ZP_20583741.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|436930031|ref|ZP_20588542.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|436938075|ref|ZP_20592987.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|436945340|ref|ZP_20597494.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|436949504|ref|ZP_20599485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|436960762|ref|ZP_20604399.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|436974665|ref|ZP_20611164.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|436983928|ref|ZP_20614248.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|436991132|ref|ZP_20617311.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|437007433|ref|ZP_20623286.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|437016658|ref|ZP_20626074.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|437033326|ref|ZP_20632520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|437037918|ref|ZP_20634328.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|437049624|ref|ZP_20640216.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|437054922|ref|ZP_20643222.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|437066405|ref|ZP_20649483.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|437072824|ref|ZP_20652666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|437080646|ref|ZP_20657196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|437088891|ref|ZP_20661796.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|437111632|ref|ZP_20668219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|437118552|ref|ZP_20670386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|437133447|ref|ZP_20678420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|437139489|ref|ZP_20681822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|437143581|ref|ZP_20684405.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|437149983|ref|ZP_20688493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|437160241|ref|ZP_20694517.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|437172216|ref|ZP_20701014.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|437180343|ref|ZP_20706066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|437185725|ref|ZP_20709146.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|437206828|ref|ZP_20712554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|437262189|ref|ZP_20718909.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|437270377|ref|ZP_20723173.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|437275158|ref|ZP_20725704.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|437284176|ref|ZP_20729429.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|437315446|ref|ZP_20737135.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|437330767|ref|ZP_20741794.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|437336094|ref|ZP_20742916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|437377383|ref|ZP_20750038.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|437420458|ref|ZP_20754632.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|437439230|ref|ZP_20757170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|437461323|ref|ZP_20762272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|437472192|ref|ZP_20765427.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|437489918|ref|ZP_20770700.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|437510806|ref|ZP_20776884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|437524989|ref|ZP_20779556.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|437549561|ref|ZP_20783360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|437576688|ref|ZP_20790759.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|437593491|ref|ZP_20795424.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|437606102|ref|ZP_20799636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|437613324|ref|ZP_20801508.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|437627613|ref|ZP_20805896.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|437662560|ref|ZP_20813525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|437676523|ref|ZP_20816984.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|437695092|ref|ZP_20822062.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|437713633|ref|ZP_20827513.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|437721442|ref|ZP_20829060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|437793254|ref|ZP_20837334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|437814539|ref|ZP_20842361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|437869053|ref|ZP_20848292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|438100713|ref|ZP_20863980.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|438109166|ref|ZP_20867229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|438131978|ref|ZP_20873745.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|445130531|ref|ZP_21381340.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|445140334|ref|ZP_21384892.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|445150596|ref|ZP_21389812.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|445173607|ref|ZP_21396748.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|445191693|ref|ZP_21399867.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|445232237|ref|ZP_21406008.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|445275224|ref|ZP_21410560.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|445334903|ref|ZP_21415283.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|445344447|ref|ZP_21417623.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|445361962|ref|ZP_21424025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|75481689|sp|Q57LI4.1|RLMN_SALCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81362045|sp|Q5PNI4.1|RLMN_SALPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81628152|sp|Q8Z4P2.1|RLMN_SALTI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829875|sp|A9N1Z8.1|RLMN_SALPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807202|sp|B5FR66.1|RLMN_SALDC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807203|sp|B5R584.1|RLMN_SALEP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807204|sp|B5RCZ4.1|RLMN_SALG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807205|sp|B4TD95.1|RLMN_SALHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807206|sp|B4T0Q1.1|RLMN_SALNS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807207|sp|C0PYM8.1|RLMN_SALPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807208|sp|B5BAY3.1|RLMN_SALPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807209|sp|B4TR97.1|RLMN_SALSV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|353077052|gb|EHB42812.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353568964|gb|EHC33697.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|353588033|gb|EHC47184.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353618239|gb|EHC68978.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353628473|gb|EHC76519.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353639317|gb|EHC84626.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|353645696|gb|EHC89327.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|357204750|gb|AET52796.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357955978|gb|EHJ81597.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|363549922|gb|EHL34253.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|363554248|gb|EHL38484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|363560874|gb|EHL45005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|363564855|gb|EHL48895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|363565051|gb|EHL49089.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|363574248|gb|EHL58117.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|363574434|gb|EHL58302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|366063051|gb|EHN27272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|366064121|gb|EHN28325.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|366066554|gb|EHN30716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|366069326|gb|EHN33450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|366074244|gb|EHN38308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|366082645|gb|EHN46576.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|366829122|gb|EHN56000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|372205935|gb|EHP19440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|374352351|gb|AEZ44112.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|379985477|emb|CCF88420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|381295393|gb|EIC36507.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|381297517|gb|EIC38607.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|381303927|gb|EIC44938.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|381304428|gb|EIC45412.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|381313544|gb|EIC54326.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|383799374|gb|AFH46456.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392612865|gb|EIW95332.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|392618905|gb|EIX01293.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|392736208|gb|EIZ93374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|392737459|gb|EIZ94619.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|392737485|gb|EIZ94643.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|392747279|gb|EJA04278.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|392747593|gb|EJA04589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|392756896|gb|EJA13790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|392758392|gb|EJA15259.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|392764392|gb|EJA21192.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|392769147|gb|EJA25891.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|392772544|gb|EJA29245.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|392783226|gb|EJA39855.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|392784526|gb|EJA41124.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|392785184|gb|EJA41765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|392795144|gb|EJA51525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|392798457|gb|EJA54730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|392800572|gb|EJA56806.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|392807690|gb|EJA63758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|392817806|gb|EJA73708.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|392818939|gb|EJA74818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|392820968|gb|EJA76801.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|392830062|gb|EJA85720.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|392837967|gb|EJA93534.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|392839041|gb|EJA94586.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|395988769|gb|EJH97915.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|395992348|gb|EJI01466.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|395993387|gb|EJI02482.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|395999599|gb|EJI08617.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|396002149|gb|EJI11154.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|396004654|gb|EJI13636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|396009908|gb|EJI18823.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|396019635|gb|EJI28487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|396020974|gb|EJI29807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|396021108|gb|EJI29939.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|396026474|gb|EJI35241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|396033294|gb|EJI42004.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|396036341|gb|EJI45002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|396038850|gb|EJI47484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|396047720|gb|EJI56291.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|396050619|gb|EJI59142.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|396058914|gb|EJI67373.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|396059007|gb|EJI67465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|396063219|gb|EJI71620.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|396069224|gb|EJI77564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|396075023|gb|EJI83300.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|402518296|gb|EJW25681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|402518748|gb|EJW26120.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|402529211|gb|EJW36450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|402531242|gb|EJW38454.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|434941375|gb|ELL47826.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|434956970|gb|ELL50652.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|434960396|gb|ELL53778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|434963652|gb|ELL56733.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434964575|gb|ELL57573.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|434971594|gb|ELL64097.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|434978460|gb|ELL70493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|434984085|gb|ELL75846.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|434987715|gb|ELL79347.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|434997209|gb|ELL88474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|435003008|gb|ELL94047.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|435004120|gb|ELL95113.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|435011067|gb|ELM01804.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|435013335|gb|ELM03989.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|435021723|gb|ELM12091.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|435025432|gb|ELM15580.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|435028827|gb|ELM18887.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|435032855|gb|ELM22778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|435034526|gb|ELM24395.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|435036118|gb|ELM25940.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|435052573|gb|ELM42064.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|435052668|gb|ELM42156.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|435053258|gb|ELM42711.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|435064571|gb|ELM53698.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|435068655|gb|ELM57666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|435068842|gb|ELM57852.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|435077340|gb|ELM66095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|435082640|gb|ELM71252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|435087918|gb|ELM76391.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|435096068|gb|ELM84342.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|435098301|gb|ELM86544.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|435099270|gb|ELM87481.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|435109508|gb|ELM97455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|435112300|gb|ELN00169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|435116314|gb|ELN04060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|435118041|gb|ELN05722.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|435120677|gb|ELN08242.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|435131377|gb|ELN18590.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|435132088|gb|ELN19289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|435139666|gb|ELN26649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|435145216|gb|ELN32040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|435147167|gb|ELN33946.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|435147658|gb|ELN34415.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|435149135|gb|ELN35848.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|435159276|gb|ELN45628.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|435162114|gb|ELN48310.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|435171108|gb|ELN56751.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|435175081|gb|ELN60509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|435180911|gb|ELN66011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|435186163|gb|ELN71012.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|435189377|gb|ELN74011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|435197810|gb|ELN82066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|435201136|gb|ELN85068.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|435204110|gb|ELN87822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435206317|gb|ELN89856.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|435212624|gb|ELN95593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|435220381|gb|ELO02678.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|435226424|gb|ELO08002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|435231128|gb|ELO12386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|435231948|gb|ELO13093.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|435243381|gb|ELO23647.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|435246744|gb|ELO26734.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|435248690|gb|ELO28546.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|435251805|gb|ELO31403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|435256371|gb|ELO35680.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|435264579|gb|ELO43491.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|435267471|gb|ELO46169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|435276260|gb|ELO54272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|435278045|gb|ELO55921.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|435285837|gb|ELO63199.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435286577|gb|ELO63830.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|435293060|gb|ELO69790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|435294461|gb|ELO71094.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|435295604|gb|ELO72053.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|435324984|gb|ELO96877.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|435332743|gb|ELP03646.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|435335282|gb|ELP05555.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|444851732|gb|ELX76818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|444852360|gb|ELX77440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|444856755|gb|ELX81779.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|444859847|gb|ELX84783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|444862587|gb|ELX87435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|444867881|gb|ELX92554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444874995|gb|ELX99227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|444880208|gb|ELY04288.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|444884408|gb|ELY08241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|444887710|gb|ELY11400.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 388
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|440765905|ref|ZP_20944916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|440766943|ref|ZP_20945929.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|440773642|ref|ZP_20952535.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|254807201|sp|B5F1A0.1|RLMN_SALA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436411112|gb|ELP09066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|436415369|gb|ELP13289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|436421442|gb|ELP19287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
Length = 388
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
Length = 388
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQLREFFHNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APDVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LMN G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMNYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|417351020|ref|ZP_12128956.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|418512885|ref|ZP_13079121.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|353569453|gb|EHC34017.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|366083097|gb|EHN47025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
Length = 388
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|254877000|ref|ZP_05249710.1| radical SAM family protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843021|gb|EET21435.1| radical SAM family protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 370
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 233/352 (66%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KL+ + I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKLRENAEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ ++ S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFNKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L + N + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSSAEVISQLWIAARTLSKN-----NGEHDFSVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA ++LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPTDSLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A +L+ L+R ++ KINLIPF
Sbjct: 242 IDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVELLRSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|392552324|ref|ZP_10299461.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
spongiae UST010723-006]
Length = 377
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR Q+ KW++ FG+ +F++M++++ L+ KL IK
Sbjct: 9 NLLDLTREGMRELFVSWGEKPFRGDQVMKWMYHFGIDNFDEMSNINKKLKAKLHAECEIK 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q++ DGT K+ ++ +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEISVKQVASDGTIKYALVLEGGQEVETVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN + + A
Sbjct: 129 GFNRNLKVSEIIGQVW------RVAKDIGLHGDSTKRPVTNVVMMGMGEPLLNLNNVVPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D A+GLS+R V LSTSG++P +D L ++ V LA+SLHA NN LR+ LVPI+KK
Sbjct: 183 MELMMDDWAFGLSKRRVTLSTSGVVPALDILKEKIDVALAISLHAPNNELRDVLVPINKK 242
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + IT EY ML G+ND+ HA EL+ +++ T KINL
Sbjct: 243 YPIEEFLAACRRYIDGSKANKDITIEYVMLQGVNDSTDHAHELVKVLKG----TPSKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 299 IPFNPFPGNEYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVV 353
>gi|423141156|ref|ZP_17128794.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379053710|gb|EHY71601.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 388
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSADGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTDHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|374623911|ref|ZP_09696405.1| radical SAM protein [Ectothiorhodospira sp. PHS-1]
gi|373943006|gb|EHQ53551.1| radical SAM protein [Ectothiorhodospira sp. PHS-1]
Length = 373
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNL+ ++ + + GE PFRA Q+ KWIH+ G++DF MTDL+ LR L +
Sbjct: 7 TNLMGMTREELAGFFVAHGEKPFRAVQVLKWIHQRGITDFAAMTDLTKGLRAWLSEHAEV 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+AP I+ Q + DGT KW+ + N IETVFIPE+ R TLC+S+QVGCA++C FCST R
Sbjct: 67 RAPGIVMTQAARDGTHKWLLRLDDGNCIETVFIPEEGRGTLCVSSQVGCALDCSFCSTAR 126
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQL L+ E+ R ++N+V+MGMGEPLLN++ + A
Sbjct: 127 QGFNRNLTAAEIIGQLHAARGHLQPEEG------QSRVVSNVVLMGMGEPLLNFEPVVAA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISK 239
+ L+L D+AYGLS+R V LST+G++P +D+L + V LA+SLHA N+ LR++LVP+++
Sbjct: 181 MSLMLEDNAYGLSKRRVTLSTAGVVPALDRLRETGLQVALALSLHAPNDALRDQLVPLNR 240
Query: 240 KYPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KYP+ +++ AC RY+ H +T EY +L GIND+ A EL +L++ CK+N
Sbjct: 241 KYPIADVLAACRRYVGNGGHHSRVTVEYVLLDGINDSQAQARELAALLQD----VPCKVN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S S + I F IL+ +G R+ RG+DI+AACGQL G++
Sbjct: 297 LIPFNPFPESRYRRSSGAAIDRFRDILVQAGYTTITRRPRGDDIDAACGQLVGRV 351
>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 386
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
gi|205829748|sp|A5EVN1.1|RLMN_DICNV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 364
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 173/353 (49%), Positives = 227/353 (64%), Gaps = 11/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL D +P ++ GE PFRAKQ+ KW++ V DF +MTDLS LR L +
Sbjct: 6 NLFDYTPKALADWFVAQGEQPFRAKQVLKWLYHERVYDFERMTDLSKKLRAMLSEKACVI 65
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P +++D+ + DGTRKW+F N IE VFIPE +R TLCIS+Q GCA+ C FCST R
Sbjct: 66 LPQVIADKTARDGTRKWVFQYACTNSIEAVFIPEDDRGTLCISSQAGCALACPFCSTARA 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEI+ Q+W+ + + E+N R ITN+V+MGMGEPL+N+ + A
Sbjct: 126 GFNRNLTTGEIVVQVWLAKELVHCERN-----GNSRLITNVVLMGMGEPLINFNQVLPAT 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++ +SD +GLS+R V LSTSG++P I KL + + LAVSLHA N+ LRNK+VPI+++Y
Sbjct: 181 EIFMSDWGFGLSKRRVTLSTSGVVPAIHKLREVTDLSLAVSLHAPNDELRNKIVPINQRY 240
Query: 242 PLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
LK LI AC Y + +H IT+EY ML G+NDT HA +L L+R KINLI
Sbjct: 241 GLKALIEACALYAENNKQHGGITWEYVMLKGVNDTLEHAQQLADLLRN----VPGKINLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS CS I F + L +G TIRK RG+DI+AACGQL G++
Sbjct: 297 PFNEFPNSPFQCSSWEDIVRFQQFLQKAGYIATIRKTRGDDIDAACGQLVGRV 349
>gi|388257762|ref|ZP_10134941.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
gi|387938929|gb|EIK45481.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
Length = 392
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 236/354 (66%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L K + + + +GE FRA Q+ KWIH+ G +F+ MT++S LR KLKN I+
Sbjct: 23 NLLGLPEAKLIAFFESIGEKKFRAIQVMKWIHQLGADNFDDMTNVSKDLRAKLKNIAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ S DGTRK++ V ++IETVFIP+ +R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 83 LPEVVQQFDSTDGTRKFLIRVTGGSVIETVFIPDGDRGTLCVSSQVGCSLDCSFCATGKQ 142
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LT EIIGQ+W+ ++ + G R++TN+VMMGMGEPLLN+ + + ++
Sbjct: 143 GFNRDLTAAEIIGQVWIAAKSFG-----QLQANGPRRVTNVVMMGMGEPLLNFDNVVDSM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+AYG+S+R V LSTSG++P +D+L+Q LA+SLHA N+ LRN+LVPI++KY
Sbjct: 198 NLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHAPNDELRNELVPINRKY 257
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ L+ + RYI P IT EY ++ +ND HA EL L+R KINL
Sbjct: 258 PIAMLLDSAKRYIEAMPDTHRKITIEYTLIDQVNDRPHHAHELAELLRD----VPVKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN F SN N+ ++ F ILM +G T+R RG+DI+AACGQL+G++
Sbjct: 314 IPFNPFNLSNYKRVSNNALRKFQDILMEAGYITTVRTTRGDDIDAACGQLAGQV 367
>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
Length = 393
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ELGE PFRA Q+ KWI+ + DF++MTD++ LR KLK I+
Sbjct: 28 NLLDLNRKQMREFFAELGEKPFRADQVMKWIYHYCYDDFDQMTDINKVLRTKLKEVAEIR 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVADEQRSSDGTIKWAIKVGDQLVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 148 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGRRPITNVVMMGMGEPLLNLNNVVPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++P +DKL V LA+SLHA +++R+++VPI+KKY
Sbjct: 202 EIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDDVRDEIVPINKKY 261
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + +RY+T S + +T EY ML IND+ A +L ++ T KINL
Sbjct: 262 NIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQLAECLKN----TPSKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 372
>gi|395235042|ref|ZP_10413262.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
gi|394730327|gb|EJF30185.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
Length = 387
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 235/354 (66%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ELGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 22 NLLDLNRQQLREFFAELGEKPFRADQVMKWMYHYCSDDFDEMTDINKVLRNKLKEIAEIR 81
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW + ++ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 82 APEVAEEQRSADGTIKWAIKIADQLVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 141
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + +K G R ITN+VMMGMGEPLLN + + A++
Sbjct: 142 FNRNLRVSEIIGQVWRAAKIIGAQKKT-----GVRPITNVVMMGMGEPLLNLNNVVPAME 196
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R++++PI+KKY
Sbjct: 197 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIMPINKKYN 256
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++ + A RY+ S + +T EY +L +ND HA +L ++ T CKINLI
Sbjct: 257 IETFLAAVRRYLEKSNANQGRVTVEYVLLDHVNDGTEHAHQLAECLKD----TPCKINLI 312
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 313 PWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGEVI 366
>gi|438030924|ref|ZP_20855304.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
gi|435327567|gb|ELO99234.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
Length = 371
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 6 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 65
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 66 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 125
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 126 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 180 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 239
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 240 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 295
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 296 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 350
>gi|24113846|ref|NP_708356.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2a str. 301]
gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5 str. 8401]
gi|415853757|ref|ZP_11529687.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|417723907|ref|ZP_12372711.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
gi|417729442|ref|ZP_12378140.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|417734404|ref|ZP_12383055.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|417739388|ref|ZP_12387967.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|417744409|ref|ZP_12392935.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|418257523|ref|ZP_12881191.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
gi|420342843|ref|ZP_14844316.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-404]
gi|420374403|ref|ZP_14874393.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|424838843|ref|ZP_18263480.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5a str. M90T]
gi|81723142|sp|Q83K42.1|RLMN_SHIFL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123342626|sp|Q0T202.1|RLMN_SHIF8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24052937|gb|AAN44063.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
gi|383467895|gb|EID62916.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5a str. M90T]
gi|391265916|gb|EIQ24883.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-404]
gi|391316291|gb|EIQ73749.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|397897145|gb|EJL13556.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
Length = 384
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE FRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP++ S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPDAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|398795004|ref|ZP_10554946.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
gi|398797058|ref|ZP_10556384.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398103873|gb|EJL94034.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398207283|gb|EJM94033.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
Length = 389
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL I+
Sbjct: 24 NLLDLNRQQMREFFLEMGEKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKLMQRAEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIIGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 198 DIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY ML +ND+ +A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTDNAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGDVI 368
>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:- str.
RSK2980]
gi|205829874|sp|A9MHL3.1|RLMN_SALAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 388
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|404375858|ref|ZP_10981038.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
gi|404290621|gb|EJZ47528.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
Length = 384
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND A +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEQAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|386287223|ref|ZP_10064398.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
gi|385279755|gb|EIF43692.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
Length = 386
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 165/354 (46%), Positives = 230/354 (64%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S Y +GE PFRA+Q+ KWIH G+ +F++MT+L LR KL+ I+
Sbjct: 19 NLLGMSRKNMEAYLSSIGEKPFRAQQILKWIHHSGIDNFDEMTNLGKPLRAKLQELAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ S DGTRKW V N++E V IP+ R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 79 PPTVVKQLDSIDGTRKWAVEVGGNNLVEAVLIPDGQRGTLCVSSQVGCSLDCSFCATGKQ 138
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF+R+LT EIIGQ+W L + N+ KR +TN+VMMGMGEPLLN+ + + A+
Sbjct: 139 GFMRDLTAAEIIGQVW-----LAIKSYDGFNNGNKRIVTNVVMMGMGEPLLNFDNVVEAM 193
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D YGLS+R V LSTSG++PM+DKL V LA+SLHA N+ LR++LVPI+KKY
Sbjct: 194 SLMLDDFGYGLSKRRVTLSTSGVVPMLDKLGDVSTVSLAISLHAPNDELRSQLVPINKKY 253
Query: 242 PLKELILACHRYITY--SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ EL+ A RYI ++T EY ++ G+ND HA EL ++R CK+NL
Sbjct: 254 PIAELLAASKRYIAKQDDTHRVVTIEYTLIAGVNDGVEHAKELAEVLRD----LPCKVNL 309
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN F SN N+ + F ++ +G T+R RG+DI+AACGQL+G++
Sbjct: 310 IPFNPFSLSNYKRPSNNAVNRFWLVMTEAGYVTTVRTPRGDDIDAACGQLAGQV 363
>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|406676649|ref|ZP_11083834.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
gi|423206308|ref|ZP_17192864.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|423209225|ref|ZP_17195779.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|404617083|gb|EKB14019.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|404621860|gb|EKB18725.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|404624963|gb|EKB21780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
Length = 367
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 232/354 (65%), Gaps = 16/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + ELGE PFRA Q+ KWI+ FG DF++MT+++ L+++LK IK
Sbjct: 7 NLLDLDRDAMRAFFVELGEKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLKAIAEIK 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 67 APEISREQRSADGTIKWALQVGDQEVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W R + + GKR ITN+VMMGMGEPLLN + + A++
Sbjct: 127 FNRNLKVSEIIGQVW------RAARVVG----GKRPITNVVMMGMGEPLLNLANVVPAMR 176
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
L++ D+ +G+S+R V +STSG++P +DKL + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 177 LMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHAPNDKLRSEIMPINDKYN 236
Query: 243 LKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++E + RY+ S + +T EY +L IND HA EL +++ T KINLI
Sbjct: 237 IEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD----TPSKINLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + NSRI F+K+LM G V +RK RG+DI+AACGQL G ++
Sbjct: 293 PFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGDVI 346
>gi|423200200|ref|ZP_17186780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
gi|404620171|gb|EKB17070.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
Length = 367
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 232/354 (65%), Gaps = 16/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + ELGE PFRA Q+ KWI+ FG DF++MT+++ L+++LK IK
Sbjct: 7 NLLDLDRDAMRAFFVELGEKPFRADQVMKWIYHFGCDDFDQMTNVNKVLKERLKAIAEIK 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 67 APEISREQRSSDGTIKWALQVGDQEVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W R + + GKR ITN+VMMGMGEPLLN + + A++
Sbjct: 127 FNRNLKVSEIIGQVW------RAARVVG----GKRPITNVVMMGMGEPLLNLANVVPAMR 176
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
L++ D+ +G+S+R V +STSG++P +DKL + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 177 LMMDDYGFGISKRRVTISTSGVVPALDKLGDQIDVALAISLHAPNDKLRSEIMPINDKYN 236
Query: 243 LKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++E + RY+ S + +T EY +L IND HA EL +++ T KINLI
Sbjct: 237 IEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD----TPSKINLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + NSRI F+K+LM G V +RK RG+DI+AACGQL G ++
Sbjct: 293 PFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGDVI 346
>gi|374620265|ref|ZP_09692799.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
gi|374303492|gb|EHQ57676.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
Length = 378
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 169/360 (46%), Positives = 233/360 (64%), Gaps = 24/360 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL ++ + + E+GE FRA+Q+ KW+H GV DF MT+L LR +L++ I
Sbjct: 16 NLLGMTRAQLEAFFGEIGEKKFRAQQVMKWMHHQGVRDFQAMTNLGKGLRDRLESCAEIT 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I S Q S DGTRKW V ++E V IPE +R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 76 PPQIESQQDSADGTRKWAIKVDGGALVEAVLIPEGDRATLCVSSQVGCSLDCKFCSTGKQ 135
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINS-----QGK-RQITNIVMMGMGEPLLNYK 175
GF R+LT EIIGQ+W + INS GK R +TN+VMMGMGEPLLN+
Sbjct: 136 GFQRDLTAAEIIGQVW-----------LAINSYDGWQAGKGRVVTNVVMMGMGEPLLNFD 184
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + ++ L+ D AYGLS+R V LSTSG++P +D+LA+ V LAVSLHA N+ +RNK+V
Sbjct: 185 NVVSSMDLMCDDLAYGLSKRKVTLSTSGVVPALDRLAELSDVSLAVSLHAPNDAIRNKIV 244
Query: 236 PISKKYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
PI+++YP+ +L+ + YI + ++T EY +L G+ND HA EL +L++
Sbjct: 245 PINRRYPIAKLLDSARAYIDAQTDRKRVVTIEYTLLAGVNDQVEHAHELAALLKD----Y 300
Query: 294 SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
CKINLIPFN FPNS + + F K+LM +G VT+R RG+DI+AACGQL G +
Sbjct: 301 PCKINLIPFNDFPNSGFERPSGNAVSRFWKVLMEAGFIVTVRTTRGDDIDAACGQLVGDV 360
>gi|422026819|ref|ZP_16373193.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|414016811|gb|EKT00570.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
Length = 388
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S SRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSTSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|378580972|ref|ZP_09829624.1| ribosomal RNA large subunit methyltransferase N [Pantoea stewartii
subsp. stewartii DC283]
gi|377816451|gb|EHT99554.1| ribosomal RNA large subunit methyltransferase N [Pantoea stewartii
subsp. stewartii DC283]
Length = 389
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ LR +L I+
Sbjct: 24 NLLDLNRQQMREFFVSLGEKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRLMELTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITNIVMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIVGAAKLTGQRPITNIVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY +L +ND+ A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI FAK+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFAKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|89256367|ref|YP_513729.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica LVS]
gi|115314812|ref|YP_763535.1| Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica OSU18]
gi|254367703|ref|ZP_04983724.1| radical SAM superfamily protein; probable Fe-S-cluster
oxidoreductase [Francisella tularensis subsp. holarctica
257]
gi|422938760|ref|YP_007011907.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC200]
gi|122325172|sp|Q0BLY6.1|RLMN_FRATO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122999743|sp|Q2A3H3.1|RLMN_FRATH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89144198|emb|CAJ79467.1| Radical SAM superfamily protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129711|gb|ABI82898.1| probable Fe-S-cluster oxidoreductase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253514|gb|EBA52608.1| radical SAM superfamily protein; probable Fe-S-cluster
oxidoreductase [Francisella tularensis subsp. holarctica
257]
gi|407293911|gb|AFT92817.1| radical SAM superfamily protein [Francisella tularensis subsp.
holarctica FSC200]
Length = 370
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +G+ F A+Q+ KWIHK GV DF+ MTDL +LR KLK+ I
Sbjct: 7 NLLGLNQKAIEDFFISIGKKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKDKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+Q+GC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQIGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLH N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 31758]
gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis YPIII]
gi|205829929|sp|A7FFY6.1|RLMN_YERP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829933|sp|B1JS02.1|RLMN_YERPY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
IP 31758]
gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
Length = 398
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSVDGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|423115572|ref|ZP_17103263.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
gi|376380962|gb|EHS93703.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
Length = 388
Score = 339 bits (870), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKTTGVRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|375262232|ref|YP_005021402.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|397659355|ref|YP_006500057.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402844577|ref|ZP_10892929.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|421726692|ref|ZP_16165861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
gi|423104272|ref|ZP_17091974.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|423125188|ref|ZP_17112867.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|365911710|gb|AEX07163.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|376384135|gb|EHS96861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|376399439|gb|EHT12054.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|394347547|gb|AFN33668.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402273534|gb|EJU22731.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|410372419|gb|EKP27131.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
Length = 388
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQLREFFKNMGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKTTGVRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 388
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGYMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 257 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|423109698|ref|ZP_17097393.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
gi|376381266|gb|EHS94004.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
Length = 388
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAVKTTGVRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
KIM10+]
gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
biovar Microtus str. 91001]
gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 32953]
gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Antiqua]
gi|108811419|ref|YP_647186.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Nepal516]
gi|145599499|ref|YP_001163575.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Pestoides F]
gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162419386|ref|YP_001605027.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Angola]
gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
CO92]
gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|384122853|ref|YP_005505473.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|384126880|ref|YP_005509494.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|384139297|ref|YP_005521999.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|384415515|ref|YP_005624877.1| hypothetical protein YPC_3072 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420547914|ref|ZP_15045762.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|420553237|ref|ZP_15050524.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|420558806|ref|ZP_15055391.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|420564253|ref|ZP_15060246.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|420569287|ref|ZP_15064821.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|420574936|ref|ZP_15069927.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|420580291|ref|ZP_15074796.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|420585612|ref|ZP_15079619.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|420590733|ref|ZP_15084225.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|420596105|ref|ZP_15089057.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|420601770|ref|ZP_15094102.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|420607217|ref|ZP_15099016.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|420612600|ref|ZP_15103850.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|420617967|ref|ZP_15108548.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|420623265|ref|ZP_15113298.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|420628346|ref|ZP_15117912.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|420633483|ref|ZP_15122520.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|420638685|ref|ZP_15127200.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|420644177|ref|ZP_15132199.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|420649442|ref|ZP_15136966.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|420655077|ref|ZP_15142034.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|420660569|ref|ZP_15146959.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|420665879|ref|ZP_15151725.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|420670752|ref|ZP_15156157.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|420676101|ref|ZP_15161024.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|420681706|ref|ZP_15166097.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|420687023|ref|ZP_15170828.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|420692221|ref|ZP_15175395.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|420698002|ref|ZP_15180481.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|420703757|ref|ZP_15185109.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|420709236|ref|ZP_15189894.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|420714667|ref|ZP_15194738.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|420720168|ref|ZP_15199473.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|420725655|ref|ZP_15204280.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|420731264|ref|ZP_15209311.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|420736304|ref|ZP_15213867.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|420741747|ref|ZP_15218758.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|420747419|ref|ZP_15223580.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|420752907|ref|ZP_15228446.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|420758597|ref|ZP_15233083.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|420763949|ref|ZP_15237719.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|420769173|ref|ZP_15242409.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|420774163|ref|ZP_15246920.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|420779767|ref|ZP_15251864.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|420785349|ref|ZP_15256750.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|420790521|ref|ZP_15261384.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|420796038|ref|ZP_15266344.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|420801097|ref|ZP_15270886.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|420806465|ref|ZP_15275744.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|420811813|ref|ZP_15280556.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|420817334|ref|ZP_15285534.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|420822646|ref|ZP_15290305.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|420827729|ref|ZP_15294870.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|420833420|ref|ZP_15300014.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|420838284|ref|ZP_15304412.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|420843472|ref|ZP_15309113.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|420849131|ref|ZP_15314201.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|420854747|ref|ZP_15318988.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|420859989|ref|ZP_15323577.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|421764386|ref|ZP_16201178.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
gi|81638860|sp|Q667Z6.1|RLMN_YERPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123372276|sp|Q1C5I5.1|RLMN_YERPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123373337|sp|Q1CK94.1|RLMN_YERPN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123776892|sp|Q7CJM9.1|RLMN_YERPE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829931|sp|A9R805.1|RLMN_YERPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829932|sp|A4TMU0.1|RLMN_YERPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM10+]
gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
Microtus str. 91001]
gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342854426|gb|AEL72979.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|391424135|gb|EIQ86552.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|391425019|gb|EIQ87338.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|391425512|gb|EIQ87769.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|391439181|gb|EIQ99861.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|391440427|gb|EIR01001.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|391443996|gb|EIR04261.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|391455997|gb|EIR15063.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|391456947|gb|EIR15927.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|391459108|gb|EIR17914.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|391472073|gb|EIR29570.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|391473762|gb|EIR31109.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|391474233|gb|EIR31538.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|391488248|gb|EIR44114.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|391489579|gb|EIR45312.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|391490920|gb|EIR46527.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|391504024|gb|EIR58157.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|391504342|gb|EIR58442.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|391509292|gb|EIR62932.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|391519882|gb|EIR72482.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|391521885|gb|EIR74316.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|391522799|gb|EIR75160.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|391534858|gb|EIR85994.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|391537633|gb|EIR88510.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|391539882|gb|EIR90569.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|391552888|gb|EIS02273.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|391553340|gb|EIS02672.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|391554150|gb|EIS03421.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|391568010|gb|EIS15796.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|391569159|gb|EIS16786.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|391574500|gb|EIS21377.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|391582045|gb|EIS27857.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|391584662|gb|EIS30162.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|391595172|gb|EIS39246.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|391597920|gb|EIS41696.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|391599297|gb|EIS42930.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|391612272|gb|EIS54362.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|391612918|gb|EIS54939.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|391616598|gb|EIS58240.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|391625264|gb|EIS65791.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|391631126|gb|EIS70793.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|391636046|gb|EIS75126.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|391638261|gb|EIS77086.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|391648033|gb|EIS85598.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|391651846|gb|EIS88973.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|391656655|gb|EIS93258.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|391661089|gb|EIS97170.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|391668940|gb|EIT04128.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|391678150|gb|EIT12394.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|391679120|gb|EIT13281.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|391679830|gb|EIT13928.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|391692086|gb|EIT24956.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|391694975|gb|EIT27589.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|391696750|gb|EIT29203.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|391708412|gb|EIT39673.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|391712580|gb|EIT43445.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|391713119|gb|EIT43927.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|391724780|gb|EIT54318.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|391726169|gb|EIT55553.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|391728624|gb|EIT57712.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|411175700|gb|EKS45726.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
Length = 398
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSVDGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|448243474|ref|YP_007407527.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445213838|gb|AGE19508.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|453061734|gb|EMF02731.1| ribosomal RNA large subunit methyltransferase N [Serratia
marcescens VGH107]
Length = 398
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KWI+ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWIYHYCCDDFEQMTDINKVLRGKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSADGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGALKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L +++ T CKINL
Sbjct: 267 NIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|406947137|gb|EKD78125.1| hypothetical protein ACD_42C00034G0001 [uncultured bacterium]
Length = 368
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/350 (50%), Positives = 227/350 (64%), Gaps = 13/350 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ S + +GE FRA QL +WIH+ GV +F+ M++LS R+KLK I
Sbjct: 7 NLLNFSRKGLTALMQSMGEPQFRATQLTQWIHQRGVMNFDDMSNLSKLFREKLKAETCIT 66
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+SDQ S DGTRK++F + N IETVFIPEK R TLC+S+QVGCA+NC FCSTG++
Sbjct: 67 LLETISDQTSSDGTRKFLFRLYDGNAIETVFIPEKTRGTLCVSSQVGCALNCSFCSTGKE 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL++ EIIGQ+++ KL+ + + I TN+VMMGMGEPLLNY I A+
Sbjct: 127 GFNRNLSLAEIIGQVFLVRDKLKDKPRLTI--------TNVVMMGMGEPLLNYPPVIEAM 178
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D AYGLS+ V LSTSG++PM+ +L ++ PV LAVSLHA N LR +LVPI+KKY
Sbjct: 179 DLMTHDLAYGLSKYRVTLSTSGVVPMMLQLKKDSPVSLAVSLHAPTNELREQLVPINKKY 238
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL+ L+ C Y + I FEY ML IND+ HA +LI L+ CK+NLIP
Sbjct: 239 PLEVLMPVCRNYFPADSKRCIVFEYVMLKNINDSLTHAKQLIRLLDN----MPCKVNLIP 294
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
FN FP +N +CS I F L +GI IRK RG DI+ ACGQL+G
Sbjct: 295 FNPFPKTNYVCSDMETILAFQNRLTAAGIKTWIRKTRGEDIDGACGQLAG 344
>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
Ech1591]
gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
Length = 392
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + + + ELGE PFRA Q+ KWI+ + DFN+MTD++ LR KL+ I+
Sbjct: 27 NLLDFNRQQMRAFFAELGEKPFRADQVMKWIYHYCCDDFNQMTDINKVLRGKLQAIAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVVDEQRSSDGTIKWAILVDGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA + +RN+++PI+KKY
Sbjct: 201 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 261 DIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 317 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 371
>gi|156502452|ref|YP_001428517.1| radical SAM protein [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|423050715|ref|YP_007009149.1| radical SAM protein [Francisella tularensis subsp. holarctica F92]
gi|205829764|sp|A7NC58.1|RLMN_FRATF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156253055|gb|ABU61561.1| radical SAM enzyme, Cfr family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951437|gb|AFX70686.1| radical SAM protein [Francisella tularensis subsp. holarctica F92]
Length = 370
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/352 (46%), Positives = 232/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +G+ F A+Q+ KWIHK GV DF+ MTDL +LR KLK+ I
Sbjct: 7 NLLGLNQKAIEDFFISIGKKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKDKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE+ R TLC+S+Q+GC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQIGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLH N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHTPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/354 (45%), Positives = 234/354 (66%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + K + + + +GE FRA Q+ KWIH+ G +F+ M+++S +LR KLK+ I
Sbjct: 34 NLLGMPEAKLIAFFESIGEKKFRAIQVMKWIHQLGADNFDDMSNVSKALRAKLKDCAEIY 93
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ S DGTRK++ V N++ETVFIP+ +R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 94 APEVVRQLDSADGTRKFLIRVAGGNVVETVFIPDGDRGTLCVSSQVGCSLDCSFCATGKQ 153
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LT EIIGQ+W+ ++ + G R +TN+VMMGMGEPLLN+ + + A+
Sbjct: 154 GFNRDLTAAEIIGQVWIAAKSFG-----QLQANGPRTVTNVVMMGMGEPLLNFDNVVDAM 208
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+AYG+S+R V LSTSG++P +D+L+Q LA+SLHA N+ LRN+LVPI++KY
Sbjct: 209 NLMMHDNAYGISKRRVTLSTSGVVPQLDRLSQYTDACLAISLHAPNDELRNELVPINRKY 268
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ L+ + RYI P IT EY ++ +ND HA +L L+R KINL
Sbjct: 269 PIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLAELLRD----VPVKINL 324
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN F SN N+ ++ F ILM G T+R RG+DI+AACGQL+G +
Sbjct: 325 IPFNPFNLSNYKRVSNNALRKFQDILMQEGYITTVRTTRGDDIDAACGQLAGSV 378
>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
Length = 398
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ +LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAQMGEKPFRADQVMKWMYHYCYDDFEQMTDINKALRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAQEQRSADGTIKWAITVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN++VPI++KY
Sbjct: 207 DIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|333892268|ref|YP_004466143.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
gi|332992286|gb|AEF02341.1| ribosomal RNA large subunit methyltransferase N [Alteromonas sp.
SN2]
Length = 372
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/356 (48%), Positives = 235/356 (66%), Gaps = 12/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L+ N+ KE GE PFRA Q+ KWI++ G SDF KM++L+ +LR L +
Sbjct: 4 TNLLNLNREGLRNFFKEKGEKPFRADQVMKWIYQQGESDFEKMSNLNKNLRAMLIEHCEV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP I Q + DGT K+ ++ +ETV+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 64 KAPEIAYFQEASDGTIKFALALEGGQEVETVWIPEADRATLCVSSQVGCALECTFCSTAQ 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+V EIIGQ+W L K+ KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 124 QGFNRNLSVSEIIGQVWRVATFLGLSKDTS-----KRPITNVVMMGMGEPLLNLKNVVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D +GLS+R V LSTSG++P +D L + V LA+SLHA N+ LRN++VP++KK
Sbjct: 179 MNIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDELRNEIVPVNKK 238
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + RY+ S + +T EY ML IND+ A EL +++ T CKIN
Sbjct: 239 YNIEAFLAGVRRYLEKSKANQGRVTVEYVMLSHINDSTDQAHELAKVLKD----TPCKIN 294
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S +CS NSRI F+K+LM+ G +RK RG+DI+AACGQL G ++
Sbjct: 295 LIPFNPYPGSPYLCSSNSRIDRFSKVLMDYGFTTVVRKTRGDDIDAACGQLVGDVV 350
>gi|304398588|ref|ZP_07380460.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
gi|440757322|ref|ZP_20936510.1| Ribosomal RNA large subunit methyltransferase N [Pantoea
agglomerans 299R]
gi|304353799|gb|EFM18174.1| radical SAM enzyme, Cfr family [Pantoea sp. aB]
gi|436428881|gb|ELP26530.1| Ribosomal RNA large subunit methyltransferase N [Pantoea
agglomerans 299R]
Length = 389
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ LR +L I+
Sbjct: 24 NLLDLNRQQMREFFLSLGEKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRLMELTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA+N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAANDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY +L +ND+ A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIAKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|381403680|ref|ZP_09928364.1| ribosomal RNA large subunit methyltransferase N [Pantoea sp. Sc1]
gi|380736879|gb|EIB97942.1| ribosomal RNA large subunit methyltransferase N [Pantoea sp. Sc1]
Length = 389
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + + LGE PFRA Q+ KWI+ + DF +MTD++ LR +L I+
Sbjct: 24 NLLDLNRQQMREFFQSLGEKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRLMELTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY +L +ND+ A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AA GQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXGQLAGDVI 363
>gi|134301956|ref|YP_001121925.1| radical SAM protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421753618|ref|ZP_16190609.1| radical SAM protein [Francisella tularensis subsp. tularensis 831]
gi|421757344|ref|ZP_16194226.1| radical SAM protein [Francisella tularensis subsp. tularensis
80700103]
gi|421759203|ref|ZP_16196037.1| radical SAM protein [Francisella tularensis subsp. tularensis
70102010]
gi|424674522|ref|ZP_18111440.1| radical SAM protein [Francisella tularensis subsp. tularensis
70001275]
gi|205829767|sp|A4IY03.1|RLMN_FRATW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|134049733|gb|ABO46804.1| radical SAM enzyme, Cfr family [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086884|gb|EKM86997.1| radical SAM protein [Francisella tularensis subsp. tularensis 831]
gi|409091267|gb|EKM91270.1| radical SAM protein [Francisella tularensis subsp. tularensis
70102010]
gi|409092799|gb|EKM92766.1| radical SAM protein [Francisella tularensis subsp. tularensis
80700103]
gi|417435000|gb|EKT89932.1| radical SAM protein [Francisella tularensis subsp. tularensis
70001275]
Length = 370
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/352 (47%), Positives = 231/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFI E+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFILEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|407695029|ref|YP_006819817.1| ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
gi|407252367|gb|AFT69474.1| Ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
Length = 380
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 234/356 (65%), Gaps = 16/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL S + + E+GE FRA+Q+ KWIH F++MTD+ +LR+KL I+
Sbjct: 8 NLLGFSREQMEAFFLEMGEKKFRAQQVMKWIHHHQADHFDQMTDVGKALRQKLTEVAEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ + IS DGTRKW+F +ETVFIP+ R TLC+S+QVGCA++C FCSTG+Q
Sbjct: 68 GPKVLHEGISRDGTRKWVFEADGGGAVETVFIPDGRRGTLCVSSQVGCAVDCGFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LT EIIGQ+W +N+ G+ ITN+VMMGMGEP+LNY + + A+
Sbjct: 128 GFQRDLTSAEIIGQVWQAGRAFGPRRNL-----GEHPITNVVMMGMGEPMLNYDAVLTAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+ ++ + LSTSG++P ID+L+++ V LAVSLHA N+ LRN+LVP+++KY
Sbjct: 183 RIMKDDLGYGIGKKRITLSTSGVVPKIDQLSRDLDVALAVSLHAPNDELRNELVPLNRKY 242
Query: 242 PLKELILACHRY---ITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
PL EL+ AC RY IT+ RH IT EY ML +ND HA +L+ L+ N I K+
Sbjct: 243 PLAELMAACKRYSDNITH--RHNTITMEYVMLRDVNDKPEHARQLVKLL--NGI--PVKV 296
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP++ S+ I F K L + G+ T+R RG+DI+AACGQL G +
Sbjct: 297 NLIPFNPFPHAGYERSRKKDILEFHKFLNDHGLLTTVRTTRGDDIDAACGQLVGTV 352
>gi|165976692|ref|YP_001652285.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303250645|ref|ZP_07336842.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252906|ref|ZP_07534795.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307261750|ref|ZP_07543416.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263937|ref|ZP_07545541.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|205829706|sp|B0BQK6.1|RLMN_ACTPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|165876793|gb|ABY69841.1| hypothetical protein APJL_1285 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302650633|gb|EFL80792.1| hypothetical protein APP6_0233 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859695|gb|EFM91719.1| hypothetical protein appser6_14180 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306868568|gb|EFN00379.1| hypothetical protein appser12_13090 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306870802|gb|EFN02542.1| hypothetical protein appser13_13460 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 393
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRQEMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|387886621|ref|YP_006316920.1| radical SAM supeorfamily protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871437|gb|AFJ43444.1| radical SAM supeorfamily protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 370
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/353 (47%), Positives = 232/353 (65%), Gaps = 7/353 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK + I
Sbjct: 6 TNLLGLNQKAIEAFFILIGEKKFHARQVFKWIHKKGVIDFDSMTDLGKNLRNKLKENAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ ++ S DGT KW+ V + +ETVFIPE+ R TLC+S+QVGC +NC FCSTG+Q
Sbjct: 66 VIPKVVFNKASKDGTHKWLIDVGGSAVETVFIPEEGRGTLCVSSQVGCTLNCSFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ E+I QLW+ L + N + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 126 GFNRNLSSAEVISQLWIAARTLSKN-----NGEHDFSVTNIVMMGMGEPLMNFENVVPAM 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA ++LRN++VPI+KKY
Sbjct: 181 DIMMDDLAYGLSRRKVTLSTSGVVPKIYDLLEQSGVSLAVSLHAPTDSLRNEIVPINKKY 240
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
+ EL+ AC Y P ITFEY ++ +ND A +L+ L+R ++ KINLIP
Sbjct: 241 NIDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEQLVELLRSREV--PAKINLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN +P + N+RI F + L ++G T+RK RG+DI AACGQL+G ++
Sbjct: 299 FNPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIYAACGQLAGNVM 351
>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
Length = 398
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSIDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|417708574|ref|ZP_12357605.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|417713570|ref|ZP_12362535.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|417718409|ref|ZP_12367306.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|417828928|ref|ZP_12475479.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|420321407|ref|ZP_14823235.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|420331866|ref|ZP_14833523.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|335574783|gb|EGM61101.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|391247478|gb|EIQ06727.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|391251426|gb|EIQ10641.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
Length = 384
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE FRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis PB1/+]
gi|205829930|sp|B2K9Q3.1|RLMN_YERPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
Length = 398
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSVDGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|416787465|ref|ZP_11879529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|416799095|ref|ZP_11884444.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|420281761|ref|ZP_14783997.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|425268347|ref|ZP_18659985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|390781098|gb|EIO48787.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|408182466|gb|EKI08972.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
Length = 384
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE FRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKTFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|340000243|ref|YP_004731127.1| hypothetical protein SBG_2301 [Salmonella bongori NCTC 12419]
gi|339513605|emb|CCC31359.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 388
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 257 NIDTFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|33151554|ref|NP_872907.1| ribosomal RNA large subunit methyltransferase N [Haemophilus
ducreyi 35000HP]
gi|81423849|sp|Q7VNZ4.1|RLMN_HAEDU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33147774|gb|AAP95296.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 393
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++++ + + LGE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNMTRQEMREFLANLGEKPFRADQLMKWIYHFGEDEFDNMSNINKVLREKLKKVAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APAIAIEQRSSDGTIKWAMQVGNQQIETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGITGVRPITNVVMMGMGEPLLNMNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA NN LRN+++PI+KKY
Sbjct: 202 QIMLDDFAYGLSKRRVTLSTAGVVPALDLMREKIDVALAISLHAPNNELRNEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + +Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVAKYLAVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 372
>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451965885|ref|ZP_21919140.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451315134|dbj|GAC64502.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
Length = 411
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 231/354 (65%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KWI+ + DF+ MTD++ LR KLK I+
Sbjct: 46 NLLDLNRKQMREFFAAMGEKPFRADQIMKWIYHYCCDDFDAMTDINKVLRAKLKQVAEIR 105
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 106 APEVAVEQRSSDGTIKWALQVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 165
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + +K G R ITN+VMMGMGEPLLN + I A++
Sbjct: 166 FNRNLRVSEIIGQVWRAAKIIGAQK-----VTGNRPITNVVMMGMGEPLLNMTNVIPAME 220
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 221 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDQIVPINRKYN 280
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++ + + RY+ S + +T EY ML +ND HA +L ++ T CKINLI
Sbjct: 281 IETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAECLKD----TPCKINLI 336
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSRI F+K+LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 337 PWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 390
>gi|406945406|gb|EKD76900.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium]
Length = 374
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/350 (48%), Positives = 229/350 (65%), Gaps = 14/350 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ S + + K +GE FRA Q+ +WIH+ GV DF+ MT+ S R+KLK I
Sbjct: 7 NLLNFSRNALIEFVKSMGEPAFRATQVMQWIHQRGVVDFDLMTNFSKVFREKLKQETCIS 66
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
++DQ S DGTRK++F + + IETVFIPEK R TLC+S+QVGCA+NC FCSTG++
Sbjct: 67 KLETITDQESRDGTRKFLFRLYDGSAIETVFIPEKTRGTLCVSSQVGCALNCSFCSTGKE 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL++ EIIGQL++ KL+ + QITN+VMMGMGEPLLNY+ I A+
Sbjct: 127 GFNRNLSLAEIIGQLFLARDKLKNTPH---------QITNVVMMGMGEPLLNYQPVIDAM 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D AYGLS+ V LSTSG++P + + ++ LAVSLHA N LR +LVPI+KKY
Sbjct: 178 ELMMHDLAYGLSKYRVTLSTSGVVPQLLQFKKDSIASLAVSLHAPTNELREQLVPINKKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL+ L+ C Y + I FEY ML GIND+ + A +LI L+ CKINLIP
Sbjct: 238 PLEVLMPVCRDYFPTDSKRCIVFEYVMLKGINDSLLQAKQLIRLLDN----MPCKINLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
FN FP ++ +CS I F L +G+ +RK RG+DI+ ACGQL+G
Sbjct: 294 FNPFPKTDYVCSDMQTILAFQDRLTKAGVKTWVRKTRGDDIDGACGQLAG 343
>gi|307246190|ref|ZP_07528272.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255171|ref|ZP_07536989.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259608|ref|ZP_07541333.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306853125|gb|EFM85348.1| hypothetical protein appser1_13950 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862044|gb|EFM94020.1| hypothetical protein appser9_14070 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866544|gb|EFM98407.1| hypothetical protein appser11_14070 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 393
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRKEMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0.1|RLMN_IDILO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 238/357 (66%), Gaps = 17/357 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + +E+GE PFRA+Q+ KW++ F V DF++MT+L+ +LR+KLK I+
Sbjct: 10 NLLDLNREGIKEFFREMGEKPFRAEQVMKWLYHFCVDDFDEMTNLNKALREKLKQVAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + Q S DGT K+ + +ETV+IPE +R TLC+S+QVGCA+ C FCSTG Q
Sbjct: 70 APEVREQQQSSDGTIKFAMTLFDGQDVETVWIPEGDRATLCVSSQVGCALECTFCSTGAQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK---RQITNIVMMGMGEPLLNYKSTI 178
GF RNL+V EIIGQ+W N + + GK + +TN+VMMGMGEPLLN + +
Sbjct: 130 GFNRNLSVAEIIGQVWRV--------NQLLGAYGKTGIKPVTNVVMMGMGEPLLNLNNVV 181
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A++L+L D +GLS+R V LSTSG++P ++KL + V LA+SLHA ++ LRN++VPI+
Sbjct: 182 PAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVMLAISLHAPDDELRNEIVPIN 241
Query: 239 KKYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KKY ++E + + RY+ S + +T EY ML +ND+ A L ++ T KI
Sbjct: 242 KKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALAKTLKD----TPSKI 297
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN FP S+ S NSRI FAK+LM G+ V +RK RG+DI+AACGQL G ++
Sbjct: 298 NLIPFNPFPGSDYGRSSNSRIDRFAKVLMEYGLTVMVRKTRGDDIDAACGQLVGDVI 354
>gi|407691681|ref|YP_006816470.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
suis H91-0380]
gi|407387738|gb|AFU18231.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
suis H91-0380]
Length = 393
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRQEMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEADRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|421495456|ref|ZP_15942739.1| ribosomal RNA large subunit methyltransferase N [Aeromonas media
WS]
gi|407185531|gb|EKE59305.1| ribosomal RNA large subunit methyltransferase N [Aeromonas media
WS]
Length = 374
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 232/355 (65%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL + ELGE PFRA Q+ KWI+ G DF++M++++ +LR++LK I
Sbjct: 13 TNLLDLDRDAMRAFFVELGEKPFRADQIMKWIYHSGCDDFDQMSNVNKALRERLKAIAEI 72
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP I +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 73 RAPEISREQRSADGTIKWALQVGDQEVETVYIPEADRATLCVSSQVGCALACTFCSTAQQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W R K + GKR ITN+VMMGMGEPLLN + + A+
Sbjct: 133 GFNRNLKVSEIIGQVW------RAAKVVG----GKRPITNVVMMGMGEPLLNLANVVPAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D +G+S+R V LSTSG++P +D L + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 183 SLMMDDFGFGISKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDKLRSEIMPINDKY 242
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY +L IND HA EL +++ T CK+NL
Sbjct: 243 NIEAFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAQVLKD----TPCKVNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + NSRI F+K+LM G+ V +RK RG+DI+AACGQL G+++
Sbjct: 299 IPFNPFPGNPFGKPSNSRIDRFSKVLMEYGMTVIVRKTRGDDIDAACGQLVGEVI 353
>gi|307250523|ref|ZP_07532468.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307257327|ref|ZP_07539097.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306857465|gb|EFM89576.1| hypothetical protein appser4_13040 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306864177|gb|EFM96090.1| hypothetical protein appser10_13250 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 393
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRQEMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGITGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
HI4320]
gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|425068640|ref|ZP_18471756.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
gi|425071894|ref|ZP_18475000.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|254807194|sp|B4EZT6.1|RLMN_PROMH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|404598263|gb|EKA98749.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|404599019|gb|EKA99481.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
Length = 393
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + +GE PFRA Q+ KWI+ + DF++MTD++ LR KLK IK
Sbjct: 28 NLLDLNRKQMRELFVSMGEKPFRADQIMKWIYHYCYDDFDQMTDINKVLRAKLKEIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSEEQRSADGTIKWAIKVGSQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + I AL
Sbjct: 148 FNRNLKVSEIIGQVW------RAAKIIGALKETGRRPITNVVMMGMGEPLLNLNNVIPAL 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V +STSG++P +DKLA V LA+SLHA +++R+++VPI+KKY
Sbjct: 202 EIMMDDFGFGLSKRRVTVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVPINKKY 261
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 262 NIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 372
>gi|423121604|ref|ZP_17109288.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
gi|376393983|gb|EHT06637.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
Length = 388
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKNMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + YI+ S + +T EY ML +ND HA EL +L++ T CKINL
Sbjct: 257 NIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELAALLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
Length = 373
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 232/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD Y +ELGE FRA Q+ KWI+ FG DF KMT+++ +LR+KL+ I
Sbjct: 7 NLLDFDRKGLRTYFAEELGEKAFRADQIMKWIYHFGCDDFEKMTNINKNLREKLQTHCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSDAQYSSDGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 ELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
Ech703]
gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
Length = 393
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DFN+MTD++ +LR +L+ I+
Sbjct: 27 NLLDLNRQQMRAFFAALGEKPFRADQVMKWIYHYCCDDFNQMTDINKALRTRLQAIAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APDVVDEQRSSDGTIKWAILVDGQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA + +RN+++PI+KKY
Sbjct: 201 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 261 DIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 317 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 371
>gi|340782108|ref|YP_004748715.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
gi|340556261|gb|AEK58015.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
Length = 370
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 229/354 (64%), Gaps = 17/354 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M +LL L V +E GE PFRA Q+ +W+H+ V DF M+++ +LR +L
Sbjct: 14 MPHLLGLDRAGLVALLQEWGEPPFRASQILQWLHQRQVDDFAAMSNIGKALRARLMAETR 73
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
P +++DQ++ DGTRKW+ + N IETVFIPE++R TLCIS+QVGC++ C FC+TG
Sbjct: 74 WDEPEVIADQLACDGTRKWLLRLPDGNAIETVFIPEEDRGTLCISSQVGCSLACSFCATG 133
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
QG RNL+ EI+ Q+ V L G ITN+V MGMGEPLLN K I
Sbjct: 134 AQGLNRNLSSHEIVAQVRVARRHL-----------GLDAITNVVFMGMGEPLLNLKQVIP 182
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
++L+L D AYGLS R V +ST+G++P +++L +E PV LA+SLHAS N+LR++LVPI++
Sbjct: 183 VIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHASRNDLRDELVPINR 242
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL +L+ AC Y PR ITFEY ML G+ND+D A L+ L+R L +NL
Sbjct: 243 HYPLAQLMAACRSY-PLPPRRRITFEYVMLDGVNDSDADARALVRLLRGLPAL----VNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S S +RI F +I++++GI R+ RG+DI AACGQL+G++
Sbjct: 298 IPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQLAGQV 351
>gi|291618414|ref|YP_003521156.1| hypothetical protein PANA_2861 [Pantoea ananatis LMG 20103]
gi|378766152|ref|YP_005194613.1| ribosomal RNA large subunit methyltransferase N [Pantoea ananatis
LMG 5342]
gi|386016734|ref|YP_005935024.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
gi|386078386|ref|YP_005991911.1| ribosomal RNA large subunit methyltransferase N YfgB [Pantoea
ananatis PA13]
gi|291153444|gb|ADD78028.1| YfgB [Pantoea ananatis LMG 20103]
gi|327394806|dbj|BAK12228.1| radical SAM Cfr family YfgB [Pantoea ananatis AJ13355]
gi|354987567|gb|AER31691.1| ribosomal RNA large subunit methyltransferase N YfgB [Pantoea
ananatis PA13]
gi|365185626|emb|CCF08576.1| ribosomal RNA large subunit methyltransferase N [Pantoea ananatis
LMG 5342]
Length = 389
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ LR +L I+
Sbjct: 24 NLLDLNRQQMREFFVSLGEKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRLMELTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY +L +ND+ A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|354724673|ref|ZP_09038888.1| ribosomal RNA large subunit methyltransferase N [Enterobacter mori
LMG 25706]
Length = 388
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K++GE PFRA Q+ KW++ + +F+ MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQMREFFKDMGEKPFRADQVMKWMYHYCSDNFDDMTDINKVLRNKLKEVAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGTRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINKKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY ML +ND HA EL L++ T CKINL
Sbjct: 257 NIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELAELLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP++ FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 313 IPWSPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 367
>gi|381393545|ref|ZP_09919266.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379330761|dbj|GAB54399.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 388
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 232/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y +GE PFR +QL KWI++ G DF KMT+L+ LR KL ++
Sbjct: 21 NLLNFNRNGLREYLSSIGEKPFRTEQLMKWIYQEGQCDFTKMTNLNKDLRAKLIALCEVR 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 81 APEISEHQQASDGTIKFAIMLDGGQEVETVWIPETDRATLCVSSQVGCALECTFCSTAQQ 140
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQ+W + K+ KR ITN+VMMGMGEPLLN K+ + A+
Sbjct: 141 GFNRNLSVAEIIGQVWRVATFIGLSKDTS-----KRPITNVVMMGMGEPLLNLKNVVPAM 195
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D +GLS+R V LSTSG++P +D L + V LA+SLHA++N LR++LVP++KKY
Sbjct: 196 DIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAADNELRDELVPVNKKY 255
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P++E + A RY+ S + +T EY ML+G+ND+ A L +++ T KINL
Sbjct: 256 PIEEFLAAVRRYLAKSKANQGRVTVEYVMLNGVNDSTDQAHALARVLQD----TPSKINL 311
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S CS NSRI F+K+LM+ G +RK RG+DI+AACGQL G ++
Sbjct: 312 IPFNPYPGSPYTCSSNSRIDRFSKVLMSYGFTTVVRKTRGDDIDAACGQLVGDVV 366
>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
Length = 426
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/356 (46%), Positives = 235/356 (66%), Gaps = 13/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL+ + + ++GE PFRA Q+ KWI+ + DF++MTD++ LR KLK I
Sbjct: 60 TNLLDLNRKQMREFFAQMGEKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKLKEVAEI 119
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + +Q S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 120 RAPEVADEQRSSDGTIKWAIKVGDQLVETVYIPEADRATLCVSSQVGCALECKFCSTAQQ 179
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A
Sbjct: 180 GFNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPA 233
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L D +GLS+R V +STSG++P +DKL V LA+SLHA +++R+ +VPI+KK
Sbjct: 234 MEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDDIRDDIVPINKK 293
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + + +RY+T S + +T EY ML +ND+ A +L ++ T KIN
Sbjct: 294 YNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQLAECLKN----TPSKIN 349
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIP+N FP + S NSRI F K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 350 LIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAACGQLAGDVI 405
>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UMN026]
gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|417587516|ref|ZP_12238285.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|419933201|ref|ZP_14450469.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|432354433|ref|ZP_19597704.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|432402782|ref|ZP_19645534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|432427048|ref|ZP_19669547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|432461514|ref|ZP_19703661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|432476738|ref|ZP_19718735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|432518616|ref|ZP_19755802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|432538739|ref|ZP_19775639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|432632278|ref|ZP_19868203.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|432641994|ref|ZP_19877826.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|432666943|ref|ZP_19902522.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|432775597|ref|ZP_20009866.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|432887494|ref|ZP_20101547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|432913734|ref|ZP_20119367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|433019580|ref|ZP_20207780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|433054161|ref|ZP_20241335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|433068807|ref|ZP_20255593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|433159562|ref|ZP_20344397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|433179352|ref|ZP_20363747.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
gi|254807179|sp|B7N6A5.1|RLMN_ECOLU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|345335546|gb|EGW67984.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|388414231|gb|EIL74197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|430874840|gb|ELB98392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|430925253|gb|ELC45926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|430954747|gb|ELC73602.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|430988335|gb|ELD04829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|431004556|gb|ELD19770.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|431050410|gb|ELD60160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|431068619|gb|ELD77093.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|431169856|gb|ELE70071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|431181257|gb|ELE81128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|431199769|gb|ELE98496.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|431317601|gb|ELG05379.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|431415843|gb|ELG98338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|431438999|gb|ELH20368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|431529888|gb|ELI06579.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|431569590|gb|ELI42532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|431582690|gb|ELI54702.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|431677054|gb|ELJ43136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|431700235|gb|ELJ65217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
Length = 384
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A Y+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
Length = 392
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + + + ELGE PFRA Q+ KW++ + DFN+MTD++ LR KL+ I+
Sbjct: 27 NLLDFNRQQMRAFFAELGEKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKLQAIAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVVDEQRSSDGTIKWAILVDGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA + +RN+++PI+KKY
Sbjct: 201 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 261 DIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 317 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 371
>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
Length = 398
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 234/354 (66%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ELGE PFRA Q+ KW++ + DF +MTD++ LR KL++ I+
Sbjct: 33 NLLDLNRQQLREFFAELGEKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQSIAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSADGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + +K G+R ITN+VMMGMGEPLLN + + A++
Sbjct: 153 FNRNLRVSEIIGQVWRAAKIIGAQK-----VTGQRPITNVVMMGMGEPLLNLNNVVPAME 207
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 208 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINRKYN 267
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++ + + RY+ S + +T EY ML IND+ A +L +++ T CKINLI
Sbjct: 268 IETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKD----TPCKINLI 323
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 324 PWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
Length = 398
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|32035054|ref|ZP_00135120.1| COG0820: Predicted Fe-S-cluster redox enzyme [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208740|ref|YP_001053965.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|205829705|sp|A3N1S4.1|RLMN_ACTP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|126097532|gb|ABN74360.1| hypothetical protein APL_1274 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 393
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRKEMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGITGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|418241088|ref|ZP_12867621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433548003|ref|ZP_20504053.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica W22703]
gi|351779572|gb|EHB21678.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431790563|emb|CCO67093.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
Length = 397
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 32 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQRVAEIR 91
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 92 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 151
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 152 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 205
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 206 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 265
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 266 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 321
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 322 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 376
>gi|308187773|ref|YP_003931904.1| hypothetical protein Pvag_2282 [Pantoea vagans C9-1]
gi|308058283|gb|ADO10455.1| UPF0063 protein yfgB [Pantoea vagans C9-1]
Length = 389
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ LR +L I+
Sbjct: 24 NLLDLNRQQMREFFLSLGEKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRLMELTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY +L +ND+ A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
Length = 384
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEMAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N F + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFLGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386823492|ref|ZP_10110640.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|421785006|ref|ZP_16221440.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386379610|gb|EIJ20399.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|407752723|gb|EKF62872.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
Length = 398
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF +MTD++ LR KL++ I+
Sbjct: 33 NLLDLNRQQMREFFAKMGEKPFRADQVMKWIYHYCCDDFEQMTDINKVLRNKLQSVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETVFIP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSADGTIKWAITVGDQQVETVFIPDGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGALKVTGERPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L +++ T CKINL
Sbjct: 267 NIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|387888362|ref|YP_006318660.1| radical SAM protein [Escherichia blattae DSM 4481]
gi|414593916|ref|ZP_11443557.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
gi|386923195|gb|AFJ46149.1| radical SAM enzyme [Escherichia blattae DSM 4481]
gi|403195173|dbj|GAB81209.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
Length = 388
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K +GE PFRA Q+ KWI+ + DF++MTD++ LR +LK I+
Sbjct: 23 NLLDLNRPQMREFFKSMGEKPFRADQVMKWIYHYCCDDFDEMTDINKVLRARLKEIAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 143 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLTNVVPAM 196
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 197 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINRKY 256
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 257 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHINDGVEHAHQLAECLKD----TPCKINL 312
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K LM G +RK RG+DI+AACGQL+G+++
Sbjct: 313 IPWNPFPGAPYGRSSNSRIDRFSKTLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 367
>gi|372276915|ref|ZP_09512951.1| ribosomal RNA large subunit methyltransferase N [Pantoea sp.
SL1_M5]
gi|390435944|ref|ZP_10224482.1| ribosomal RNA large subunit methyltransferase N [Pantoea
agglomerans IG1]
Length = 389
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ LR +L I+
Sbjct: 24 NLLDLNRQQMREFFLSLGEKPFRADQVMKWIYHYCCDDFEQMTDINKKLRNRLMELTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + + S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEMRSTDGTIKWAIRVGDQLVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIVGAAKITGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RYI S + +T EY +L +ND+ A EL +L+++ T CKINL
Sbjct: 258 NIETFLAAVKRYIGKSNANQGRVTIEYVLLDHVNDSTDDAHELAALLKE----TPCKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 314 IPWNPFPGAPYGRSSNSRIDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 368
>gi|348028465|ref|YP_004871151.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
gi|347945808|gb|AEP29158.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
Length = 393
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 234/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ +Y + E PFRA QL KWI++ G SDF+ MT+++ LR KLKN I+
Sbjct: 26 NLLNFDRQGLRDYFASINEKPFRADQLMKWIYQAGESDFDAMTNMNKDLRAKLKNYCVIE 85
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 86 APVISEHQQASDGTIKFAMLLEGGQEVETVWIPETDRATLCVSSQVGCALECTFCSTAQQ 145
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL++ EIIGQ+W + K+ KR ITN+VMMGMGEPLLN K+ + A+
Sbjct: 146 GFNRNLSIAEIIGQVWRVATFIGMSKDT-----SKRPITNVVMMGMGEPLLNLKNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D+ +GLS+R V LSTSG++P +D L + V LA+SLHA ++ LR+++VP++KKY
Sbjct: 201 RIMLDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPDDKLRDEIVPVNKKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P++E + RY+ S + +T EY ML+ IND+ A L ++ T CKINL
Sbjct: 261 PIEEFLAGVRRYLAKSKANQGKVTVEYVMLNHINDSTDQAHALAKVLAD----TPCKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S CS NSR+ F+K+LM+ V IRK RG+DI+AACGQL G ++
Sbjct: 317 IPFNPYPGSPYTCSSNSRMDRFSKVLMDYNFTVVIRKTRGDDIDAACGQLVGDVV 371
>gi|117619957|ref|YP_856292.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|205829708|sp|A0KJ41.1|RLMN_AERHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 367
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL + ELGE PFRA Q+ KWI+ FG DF++M +++ LR++LK I
Sbjct: 6 TNLLDLDRDAMRAFFVELGEKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLKAIAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 RAPEVSREQRSSDGTIKWALQVGGQEVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W + KI GKR ITN+VMMGMGEPLLN + + A+
Sbjct: 126 GFNRNLKVSEIIGQVW---------RAAKIVG-GKRPITNVVMMGMGEPLLNLANVVPAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D YG+S+R V +STSG++P +D L + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 176 RLMMDDFGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHAPNDKLRSEIMPINDKY 235
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RY+ S + +T EY +L IND HA EL +++ T KINL
Sbjct: 236 NIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD----TPSKINL 291
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + NSRI F+K+LM G V +RK RG+DI+AACGQL G+++
Sbjct: 292 IPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGEVI 346
>gi|336317392|ref|ZP_08572248.1| methyltransferase [Rheinheimera sp. A13L]
gi|335878325|gb|EGM76268.1| methyltransferase [Rheinheimera sp. A13L]
Length = 374
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 232/356 (65%), Gaps = 15/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE FRA Q+ KWI+ F + DF+KMT+++ LR KLK I
Sbjct: 9 NLLDLTRTQMKEFFVSIGEAGFRADQVMKWIYHFCIDDFDKMTNINKKLRDKLKEKAVIA 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP +++ Q S DGT K++ + +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APVVVTRQDSADGTIKFVMGLAGGQEVETVWIPEKDRRTLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI--KINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W R I G++ +TN+VMMGMGEPLLN + +
Sbjct: 129 GFNRNLKVSEIIGQVW-------RVAQIIGSYGDTGEKPVTNVVMMGMGEPLLNLNNVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D +GLS+R V LSTSG++P +D L + V LA+SLHA NN LR++LVP++K
Sbjct: 182 AMELMLEDFGFGLSKRRVTLSTSGVVPALDMLKERIDVALAISLHAPNNTLRDELVPVNK 241
Query: 240 KYPLKELILACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KYP++E + A RY+T S +T EY ML G+ND+ A EL ++ T K+N
Sbjct: 242 KYPMEEFLAAAKRYVTDSRANDKVTVEYVMLDGVNDSMEQAHELAHALKG----TPSKVN 297
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S S NSRI F K+L G V +RK RG+DI+AACGQL G ++
Sbjct: 298 LIPFNPYPGSPYKRSSNSRIDRFNKVLQEHGYTVMVRKTRGDDIDAACGQLVGDVI 353
>gi|374849841|dbj|BAL52845.1| hypothetical conserved protein [uncultured gamma proteobacterium]
Length = 366
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 225/354 (63%), Gaps = 19/354 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL LS K + +GE PFRA+Q+ KW+H GV++F MTDL +LR +L +
Sbjct: 10 DLLGLSRSKLEEFFARMGEKPFRARQVLKWVHGRGVTEFEAMTDLGKALRARLGEIFNLT 69
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ Q S DGT KW+ + N IETVFIPE+ R TLC+S+QVGCA+ C FC+T RQ
Sbjct: 70 LPCVVGRQESRDGTVKWLMALADGNCIETVFIPEERRGTLCVSSQVGCALGCAFCATARQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+ EIIGQ+W + R Q +ITN+V+MGMGEPLLN+ + + A
Sbjct: 130 GFSRNLSAAEIIGQVW---YAFR---------QLDCRITNVVLMGMGEPLLNFDAVVDAA 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D AYGL++R V +ST+G+ P I++LA+ V LAVSLHA+ + LR+ LVPI++KY
Sbjct: 178 ELMMDDLAYGLAKRRVTVSTAGLAPAIERLAEISDVSLAVSLHATTDELRDLLVPINRKY 237
Query: 242 PLKELILACHRYITYSPR--HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+ L+ AC R+ + ITFEY ML G+ND D A L L+ + KINL
Sbjct: 238 PLQRLLAACRRFAGSERQKGRKITFEYVMLQGVNDADADAKRLAKLLSQ----VPAKINL 293
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP + CS I F IL +SG T+R+ RG DI AACGQL GK+
Sbjct: 294 IPFNPFPGAPFRCSPPETILRFQSILADSGFLTTVRRTRGEDIAAACGQLVGKV 347
>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 393
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+GE PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRKEMRELFAEMGEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEDDRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P +D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|422009346|ref|ZP_16356329.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
gi|414093164|gb|EKT54836.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
Length = 393
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/356 (46%), Positives = 235/356 (66%), Gaps = 13/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL+ + + ++GE PFRA Q+ KWI+ + DF++MTD++ LR KLK I
Sbjct: 27 TNLLDLNRKQMREFFAQMGEKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKLKEVAEI 86
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + +Q S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 87 RAPEVADEQRSSDGTIKWAIKVGDQLVETVYIPEADRATLCVSSQVGCALECKFCSTAQQ 146
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A
Sbjct: 147 GFNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPA 200
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L D +GLS+R V +STSG++P +DKL V LA+SLHA +++R+ +VPI+KK
Sbjct: 201 MEIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDDIRDDIVPINKK 260
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + + +RY+T S + +T EY ML +ND+ A +L ++ T KIN
Sbjct: 261 YNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQLAECLKN----TPSKIN 316
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIP+N FP + S NSRI F K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 317 LIPWNPFPGAPYGRSSNSRIDRFCKVLMGYGFTTIVRKTRGDDIDAACGQLAGDVI 372
>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
DSM 9187]
gi|259491997|sp|C4LC34.1|RLMN_TOLAT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
Length = 373
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/342 (48%), Positives = 229/342 (66%), Gaps = 11/342 (3%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
+ ELGE FRA Q+ KWI+ FG DF++MT+++ +LR+KL I+AP I ++Q S D
Sbjct: 20 FADELGEKAFRADQIMKWIYHFGCDDFSQMTNVNKALREKLARIAEIRAPEISTEQRSSD 79
Query: 75 GTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIG 134
GT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCSTG+QGF RNLTV EIIG
Sbjct: 80 GTIKWAMRVGDQEVETVYIPEADRATLCVSSQVGCALECKFCSTGQQGFNRNLTVSEIIG 139
Query: 135 QLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSR 194
Q+W + K+ GKR ITN+VMMGMGEPLLN + + AL L++ D +GLS+
Sbjct: 140 QVWRAAQVVGFPKDT-----GKRVITNVVMMGMGEPLLNLSNLVPALSLMMEDFGFGLSK 194
Query: 195 RHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254
R V +STSG++P +DKL V LA+SLHA N+ LR++++PI+ KY ++E + + RY+
Sbjct: 195 RRVTVSTSGVVPALDKLGDMIDVALAISLHAPNDKLRSEIMPINDKYNIQEFLGSVQRYL 254
Query: 255 TYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
+ S + +T EY +L +ND HA EL L++ T KINLIPFN FP++
Sbjct: 255 SKSNANHGRVTVEYVLLDHVNDDMEHARELAELLKD----TPSKINLIPFNPFPSNPYGK 310
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NSR+ F+K+LM G V +RK RG+DI+AACGQL G ++
Sbjct: 311 PSNSRVDRFSKVLMEYGYTVIVRKTRGDDIDAACGQLVGDVI 352
>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
Length = 398
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCFDDFEQMTDINKGLRTKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+ +VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDDIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L + ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLAACLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|254480238|ref|ZP_05093486.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
gi|214039800|gb|EEB80459.1| radical SAM enzyme, Cfr family [marine gamma proteobacterium
HTCC2148]
Length = 391
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 234/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L Y ELGE FRA+Q+ KWIH GV+D ++M++L LR+KLK+ IK
Sbjct: 20 NLLGLPLAAMEQYFLELGEKKFRAQQVLKWIHHHGVTDIDEMSNLGKVLREKLKSVAEIK 79
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+S S DGTRKW V+ ++E V IP+ R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 80 PPEIVSQHDSNDGTRKWAIRVEGGGLVEAVLIPDGKRATLCVSSQVGCSLDCSFCSTGKQ 139
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+L+ EIIGQ+W L + S R +TN+VMMGMGEPLLN+ + + A+
Sbjct: 140 GFQRDLSAAEIIGQVW-----LAIKSYDAFQSAKGRIVTNVVMMGMGEPLLNFDNVVAAM 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+AYG+S+R V LSTSG++P +DKLA+ V LAVSLHA N+ LR++LVPI++KY
Sbjct: 195 DLMMEDNAYGISKRRVTLSTSGVVPALDKLAKVSEVSLAVSLHAPNDALRSELVPINRKY 254
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ L+ + YI + ++T EY ++ G+ND HA EL L++ CKINL
Sbjct: 255 PIAVLLESARNYIDAQSDKKRVVTIEYTLIAGVNDQREHAQELAQLLKG----YPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN F S+ + + F ++L+++G VT+R RG+DI+AACGQL G+++
Sbjct: 311 IPFNTFDQSDYRRPSGNAVSRFWQVLVDAGYIVTVRTTRGDDIDAACGQLVGQVV 365
>gi|354596617|ref|ZP_09014634.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
gi|353674552|gb|EHD20585.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
Length = 393
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 234/359 (65%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ + R KL+ I+
Sbjct: 28 NLLDLNRQQMREFFASLGEKPFRADQVMKWIYHYCCDDFAQMTDINKAFRAKLQQVAEIR 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVVDEQRSSDGTIKWAILVGDQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 148 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 197
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +RN+++P+
Sbjct: 198 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRNEIMPL 257
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 258 NKKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 313
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 314 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 372
>gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
gi|386741991|ref|YP_006215170.1| ribosomal RNA large subunit methyltransferase N [Providencia
stuartii MRSN 2154]
gi|188022000|gb|EDU60040.1| 23S rRNA m2A2503 methyltransferase [Providencia stuartii ATCC
25827]
gi|384478684|gb|AFH92479.1| ribosomal RNA large subunit methyltransferase N [Providencia
stuartii MRSN 2154]
Length = 393
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF++MTD++ +LR KLK I+
Sbjct: 28 NLLDLNRKQMREFFAQMGEKPFRADQVMKWIYHYCYDDFDQMTDINKALRAKLKEVAEIR 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVAEEQRSADGTIKWAITVGDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 148 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+ +VPI+KKY
Sbjct: 202 EIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDDIVPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RY++ S + +T EY ML IND+ A +L ++ T KINL
Sbjct: 262 NIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQAHQLAECLKD----TPSKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 318 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 372
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 229/354 (64%), Gaps = 17/354 (4%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M +LL L V +E GE PFRA Q+ +W+H+ V DF M+++S +LR +L
Sbjct: 1 MPHLLGLDRAGLVALLQEWGEPPFRASQILQWLHQRQVDDFAAMSNISKALRARLMAETR 60
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
P +++DQ++ D TRKW+ + N IETVFIPE++R TLCIS+QVGC++ C FC+TG
Sbjct: 61 WDEPEVIADQLARDETRKWLLRLPDGNAIETVFIPEEDRGTLCISSQVGCSLACSFCATG 120
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
QG RNL+ EI+ Q+ V L G ITN+V MGMGEPLLN K I
Sbjct: 121 AQGLNRNLSSHEIVAQVRVARRHL-----------GLDAITNVVFMGMGEPLLNLKQVIP 169
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
++L+L D AYGLS R V +ST+G++P +++L +E PV LA+SLHAS N+LR++LVPI++
Sbjct: 170 VIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETPVNLAISLHASRNDLRDELVPINR 229
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL +L+ AC Y PR ITFEY ML G+ND+D A L+ L+R L +NL
Sbjct: 230 HYPLAQLMAACRSY-PLPPRRRITFEYVMLDGVNDSDADARALVRLLRGLPAL----VNL 284
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S S +RI F +I++++GI R+ RG+DI AACGQL+G++
Sbjct: 285 IPFNPFPGSPYRRSSLARIDAFREIVLSAGIMTVTRRPRGDDIAAACGQLAGQV 338
>gi|238921042|ref|YP_002934557.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
gi|259491987|sp|C5BET4.1|RLMN_EDWI9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
Length = 390
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 230/354 (64%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + + ++GE PFRA Q+ KWI+ + DF+ MTD++ LR +LK I+
Sbjct: 25 NLLDLDRRQMREFFVQMGEKPFRADQIMKWIYHYCCDDFDAMTDINKVLRARLKQVAEIR 84
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 85 APEVAVEQRSSDGTIKWALQVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 144
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + +K G R ITN+VMMGMGEPLLN + I A++
Sbjct: 145 FNRNLRVSEIIGQVWRAAKIIGAQK-----VTGNRPITNVVMMGMGEPLLNLTNVIPAME 199
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 200 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDTIDVALAISLHAPNDTIRDEIVPINRKYN 259
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ + + RY+ S + +T EY ML IND HA +L ++ T CKINLI
Sbjct: 260 IDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINLI 315
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSRI F+K+LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 316 PWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 369
>gi|333928648|ref|YP_004502227.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333933601|ref|YP_004507179.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|386330471|ref|YP_006026641.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
gi|333475208|gb|AEF46918.1| Ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|333492708|gb|AEF51870.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333962804|gb|AEG29577.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
Length = 398
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ LR KL++ I+
Sbjct: 33 NLLDLNRQQMREFFAKMGEKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQSVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETVFIP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSADGTIKWAIKVGDQQVETVFIPDGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGALKVTGERPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L +++ T CKINL
Sbjct: 267 NIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|205829928|sp|A1JKR9.1|RLMN_YERE8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 398
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|411009718|ref|ZP_11386047.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
aquariorum AAK1]
gi|423196239|ref|ZP_17182822.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila SSU]
gi|404633040|gb|EKB29642.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila SSU]
Length = 367
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 231/355 (65%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL + ELGE PFRA Q+ KWI+ FG DF++M +++ LR++LK I
Sbjct: 6 TNLLDLDRDAMRAFFVELGEKPFRADQVMKWIYHFGCDDFDQMNNVNKVLRERLKEIAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 RAPEVSREQRSSDGTIKWALQVGGQEVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W + KI GKR ITN+VMMGMGEPLLN + + A+
Sbjct: 126 GFNRNLKVSEIIGQVW---------RAAKIVG-GKRPITNVVMMGMGEPLLNLANVVPAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D+ YG+S+R V +STSG++P +D L + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 176 RLMMDDYGYGISKRRVTISTSGVVPALDMLGDQIDVALAISLHAPNDKLRSEIMPINDKY 235
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY +L IND HA EL +++ T KINL
Sbjct: 236 NIEAFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD----TPSKINL 291
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + NSRI F+K+LM G V +RK RG+DI+AACGQL G+++
Sbjct: 292 IPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGEVI 346
>gi|420259500|ref|ZP_14762205.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
gi|404513031|gb|EKA26861.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
Length = 396
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 31 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 90
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 91 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 150
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 151 FNRNLRVSEIIGQVW------RAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNVVPAM 204
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 205 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 264
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 265 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 320
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 321 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 375
>gi|403059493|ref|YP_006647710.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402806819|gb|AFR04457.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 418
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 234/359 (65%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 53 NLLDLNRQQMRDLFMSMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 112
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 113 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 172
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 173 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 222
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 223 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 282
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 283 NKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 338
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 339 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 397
>gi|253988864|ref|YP_003040220.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 392
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + + ++GE PFRA Q+ KWI+ + DF +MTD++ +LR KL+ I+
Sbjct: 27 NLLDLDRKQMRQFFVDMGEKPFRADQVMKWIYHYCYDDFEQMTDINKTLRAKLQQVAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVAEEQRSADGTIKWAISVGDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+ +VPI++KY
Sbjct: 201 EIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDDIVPINRKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + RY+ S + +T EY ML IND+ A +L ++ T KINL
Sbjct: 261 NIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQLAECLKD----TPSKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI FAK+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 317 IPWNPFPGAPYGRSSNSRIDRFAKVLMGYGFTTIVRKTRGDDIDAACGQLAGDVI 371
>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
Length = 398
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAKMGEKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM+ G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMDYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|146283364|ref|YP_001173517.1| radical SAM protein [Pseudomonas stutzeri A1501]
gi|145571569|gb|ABP80675.1| radical SAM enzyme, Cfr family [Pseudomonas stutzeri A1501]
Length = 347
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 161/326 (49%), Positives = 223/326 (68%), Gaps = 11/326 (3%)
Query: 31 KWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKK-NIIE 89
KWIH FGV DF+ M++L +LR+KLK I+ P I+S+ IS DGTRKW+ V + +E
Sbjct: 2 KWIHHFGVDDFDAMSNLGKALREKLKACAEIRGPEIVSEDISSDGTRKWVVRVASGSCVE 61
Query: 90 TVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI 149
TV+IP+ R TLC+S+Q GCA++C FCSTG+QGF NLT E+IGQ+W+
Sbjct: 62 TVYIPQGGRGTLCVSSQAGCALDCSFCSTGKQGFNSNLTAAEVIGQVWIANKSFG----- 116
Query: 150 KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMID 209
+ ++ R ITN+VMMGMGEPLLN+ + + A+++++ D YG+S+R V LSTSG++PMID
Sbjct: 117 TVPAKIDRAITNVVMMGMGEPLLNFDNVVAAMQIMMDDLGYGISKRKVTLSTSGVVPMID 176
Query: 210 KLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT-YSPRHMITFEYCM 268
+LA+ V LA+SLHA N LR++LVPI+KKYPL L+ AC RY++ + ++T EY +
Sbjct: 177 ELAKVIDVSLALSLHAPNEALRDQLVPINKKYPLDVLLAACKRYVSRLGEKRVLTIEYTL 236
Query: 269 LHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNS 328
L G+ND HA ++I+L+ CKINLIPFN FP+S N+ I+ F IL
Sbjct: 237 LKGVNDQPEHAEQMIALLAD----IPCKINLIPFNPFPHSGYERPSNNAIRRFQDILHKG 292
Query: 329 GIFVTIRKIRGNDINAACGQLSGKIL 354
G VT+R RG DI+AACGQL G++L
Sbjct: 293 GHNVTVRTTRGEDIDAACGQLVGQVL 318
>gi|399908780|ref|ZP_10777332.1| hypothetical protein HKM-1_04906 [Halomonas sp. KM-1]
Length = 387
Score = 337 bits (863), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 231/356 (64%), Gaps = 13/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + + +GE FRA Q+ KWIH G DF MT+LS +LR++L I
Sbjct: 22 TNLLGLTREEMEAFFLSIGEKKFRAAQVMKWIHHDGCDDFEAMTNLSKALRQRLAEVAEI 81
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCST 118
+ P ++ + S DGTRKW+ V+ + +ETV IP N R TLC+S+QVGC+++C FCST
Sbjct: 82 RGPGVVYEGTSSDGTRKWVLEVEDGSYVETVLIPADNGKRRTLCVSSQVGCSLDCSFCST 141
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
G+QGF RNLT EIIGQ+WV + + K+ R +TN+VMMGMGEPL+NY + +
Sbjct: 142 GKQGFQRNLTAAEIIGQVWVAQRSVGPRKDT-----ANRPVTNVVMMGMGEPLMNYDNVV 196
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+KL+L D+ YGLS+R V LSTSG++PM+D+L E V LA+SLHA+ + LR++LVP++
Sbjct: 197 PAMKLMLDDNGYGLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLHAATDELRSELVPLN 256
Query: 239 KKYPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KY ++ L+ AC RY+ MIT EY ++ +ND HA +L L+R+ CKI
Sbjct: 257 RKYNIRTLLDACQRYLAKCDDTRMITIEYTVIKDVNDQQEHAQQLAELLRE----LPCKI 312
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP+S +++ F + L G IR RG DI+AACGQL G++
Sbjct: 313 NLIPFNPFPHSGYEKPSRNQVMRFQQWLYELGYTAPIRTTRGGDIDAACGQLVGRV 368
>gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|375131805|ref|YP_004993905.1| Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
Length = 373
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD Y ELGE FRA Q+ KWI+ FG DF+KMT+++ LR++LK I
Sbjct: 7 NLLDFDRKGLRAYFADELGEKAFRADQIMKWIYHFGCDDFDKMTNINKKLREQLKERCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSSDGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDTLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7.1|RLMN_ALCBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 236/356 (66%), Gaps = 16/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS + + +GE FRA+Q+ KWIH F +MTD+ +LR+KL I+
Sbjct: 8 NLLGLSRPQMEEFFLTMGEKKFRAQQVLKWIHHHQADSFEQMTDVGKALRQKLSEVAEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + + IS DGTRKW+F + +ETVFIP+ R TLC+S+QVGCA++C FCSTG+Q
Sbjct: 68 GPKVTHESISRDGTRKWVFEMDNGGAVETVFIPDGRRGTLCVSSQVGCAVDCSFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R++T EIIGQ+W +N+ G+ ITN+VMMGMGEPLLNY + A+
Sbjct: 128 GFQRDMTSAEIIGQVWQASRAFGPRRNL-----GQHPITNVVMMGMGEPLLNYDKVLTAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+ ++ + +STSG+IP +++L+++ V LAVSLHA N+ LRN+LVP+++KY
Sbjct: 183 RIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLAVSLHAPNDELRNQLVPLNRKY 242
Query: 242 PLKELILACHRY---ITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
PLK+L+ AC RY IT+ RH IT EY ML +ND HA +L+ L+ N I K+
Sbjct: 243 PLKDLMAACKRYSKNITH--RHNTITMEYVMLRDVNDKPEHARQLVKLL--NGI--PVKV 296
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP++ S+ + I F K L ++G+ T+R RG+DI+AACGQL G++
Sbjct: 297 NLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDIDAACGQLVGQV 352
>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
Length = 392
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + + + +LGE PFRA Q+ KW++ + DFN+MTD++ LR KL+ I+
Sbjct: 27 NLLDFNRQQMRAFFAQLGEKPFRADQVMKWMYHYCCDDFNQMTDINKVLRGKLQAIAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVVDEQRSSDGTIKWAILVDGQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA + +RN+++PI+KKY
Sbjct: 201 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRNEIMPINKKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 261 DIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 317 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 371
>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 418
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 234/359 (65%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 53 NLLDLNRQQMRDLFMSMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 112
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 113 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 172
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 173 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 222
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 223 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 282
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 283 NKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 338
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 339 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 397
>gi|383817019|ref|ZP_09972404.1| ribosomal RNA large subunit methyltransferase N [Serratia sp.
M24T3]
gi|383294146|gb|EIC82495.1| ribosomal RNA large subunit methyltransferase N [Serratia sp.
M24T3]
Length = 411
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF MTD++ +LR+KL I+
Sbjct: 46 NLLDLNRKQMREFFLKMGEKPFRADQVMKWMYHYCSDDFEDMTDINKTLREKLARVAEIR 105
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 106 APEVAVEQRSADGTIKWAIQVGNQQVETVYIPDGDRATLCVSSQVGCALECTFCSTAQQG 165
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G R ITN+VMMGMGEPLLN + + A+
Sbjct: 166 FNRNLRVSEIIGQVW------RAAKIIGAAKIAGTRPITNVVMMGMGEPLLNLNNVVPAM 219
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 220 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINRKY 279
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + + +RY+ S + +T EY ML IND HA EL ++ T CKINL
Sbjct: 280 NIDTFLASVNRYLGKSNANQGRVTVEYVMLDHINDGTEHAHELAEKLKD----TPCKINL 335
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 336 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 390
>gi|62260668|gb|AAX77923.1| unknown protein [synthetic construct]
Length = 405
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 230/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 33 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFI + R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 93 IPKVVFSKASKDGTHKWLIDVGGSAVETVFILAEGRGTLCVSSQVGCTLNCSFCSTGKQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 153 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 207
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 208 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 267
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 268 IDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVALLKSREV--PAKINLIPF 325
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 326 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 377
>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|387868669|ref|YP_005700138.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
Length = 411
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 230/354 (64%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + + ++GE PFRA Q+ KWI+ + DF+ MTD++ LR KLK I+
Sbjct: 46 NLLDLDRKQMREFFIQMGEKPFRADQIMKWIYHYCCDDFDVMTDINKVLRAKLKQVAEIR 105
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 106 APEVAVEQRSSDGTIKWALQVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 165
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + +K G R ITN+VMMGMGEPLLN + I A++
Sbjct: 166 FNRNLRVSEIIGQVWRAAKIIGAQK-----VTGNRPITNVVMMGMGEPLLNLTNVIPAME 220
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 221 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAIRDEIVPINRKYN 280
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ + + RY+ S + +T EY ML IND HA +L ++ T CKINLI
Sbjct: 281 IDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINLI 336
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSRI F+K+LM G V +RK RG+DI+AACGQL+G+++
Sbjct: 337 PWNPFPGAPFGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGEVI 390
>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
Length = 398
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 418
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 234/359 (65%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 53 NLLDLNRQQMRDLFMSMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 112
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 113 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 172
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 173 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 222
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 223 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 282
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 283 NKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKN----TPC 338
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 339 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 397
>gi|440231978|ref|YP_007345771.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
gi|440053683|gb|AGB83586.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
Length = 398
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KWI+ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFASLGEKPFRADQVMKWIYHYCCDDFEQMTDINKVLRGKLQQIAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSSDGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAQKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDAVRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RY+ S + +T EY ML +ND+ A +L +++ T CKINL
Sbjct: 267 NIEAFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSTDDAHQLAEVLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|422013650|ref|ZP_16360269.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
gi|414102688|gb|EKT64279.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
Length = 393
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF++MTD++ LR KLK I+
Sbjct: 28 NLLDLNRKQMREFFAQMGEKPFRADQVMKWIYHYCYDDFDQMTDINKVLRAKLKEVAEIR 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVAEEQRSSDGTIKWAITVGGQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 148 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI+KKY
Sbjct: 202 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDVRDEIVPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RY++ S + +T EY ML IND+ A +L ++ T KINL
Sbjct: 262 NIETFLSSVRRYLSKSNANSGRVTVEYVMLDHINDSIEQAHQLAECLKD----TPSKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPGAPYNRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 372
>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
Length = 398
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KWI+ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMRQFFAEMGEKPFRADQVMKWIYHYCFDDFEQMTDINKVLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVTEEQRSTDGTIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + + G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAVKATGIRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
Length = 398
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 33 NLLDLNRQQMREFFAKMGEKPFRADQVMKWMYHYCYDDFEQMTDINKGLRAKLQRVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSTDGTIKWAIKVGDQQVETVYIPEGERATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGALKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 207 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|407684519|ref|YP_006799693.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407688447|ref|YP_006803620.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407700813|ref|YP_006825600.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407246130|gb|AFT75316.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407249960|gb|AFT79145.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407291827|gb|AFT96139.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 372
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 234/356 (65%), Gaps = 12/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L+ N+ KE+GE PFRA Q+ KWI++ G+SDF +M++L+ +LR L + I
Sbjct: 4 TNLLNLNREGLRNFFKEMGEKPFRADQVMKWIYQHGISDFEEMSNLNKNLRAMLIENCEI 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP I Q + DGT K+ ++ +E+V+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 64 KAPEIAYFQEASDGTIKFALTLEGGQEVESVWIPETDRATLCVSSQVGCALECTFCSTAQ 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+V EIIGQ+W L K+ KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 124 QGFNRNLSVSEIIGQVWRVATFLGLSKD-----SSKRPITNVVMMGMGEPLLNLKNVVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D +GLS+R V LSTSG++P +D L + V LA+SLHA + LRN++VPI+KK
Sbjct: 179 MDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPTDELRNEIVPINKK 238
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + RY+ S + +T EY ML IND+ A +L +++ T KIN
Sbjct: 239 YNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQLAKVLKD----TPSKIN 294
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S CS NSRI FAK+LM G +RK RG+DI+AACGQL G ++
Sbjct: 295 LIPFNPYPGSPYTCSSNSRIDRFAKVLMEYGFTTVVRKTRGDDIDAACGQLVGDVV 350
>gi|145299533|ref|YP_001142374.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida A449]
gi|205829709|sp|A4SP04.1|RLMN_AERS4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|142852305|gb|ABO90626.1| predicted Fe-S-cluster redox enzyme [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 368
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL + ELGE PFRA Q+ KWI+ FG DF++M +++ LR++LK I
Sbjct: 7 TNLLDLDRDAMRAFFVELGEKPFRADQIMKWIYHFGCDDFDQMNNVNKVLRERLKAIAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPEVSREQRSSDGTIKWALQVGGQEVETVYIPEEDRATLCVSSQVGCALACKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W R K + GKR ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLKVSEIIGQVW------RAAKIVG----GKRPITNVVMMGMGEPLLNLANVIPAM 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D YG+S+R V +STSG++P +D L + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 177 RLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALAISLHAPNDKLRSEIMPINDKY 236
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + RY+ S + +T EY +L IND HA EL +++ T KINL
Sbjct: 237 NIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD----TPSKINL 292
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + NSRI F+K+LM G V +RK RG+DI+AACGQL G+++
Sbjct: 293 IPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGEVI 347
>gi|377576744|ref|ZP_09805728.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
gi|377542776|dbj|GAB50893.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
Length = 388
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 232/354 (65%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KW++ + DF++MTD++ LR KLK I+
Sbjct: 23 NLLDLNRQQLREFFASLGEKPFRADQVMKWMYHYCCDDFDEMTDINKVLRNKLKEIAEIR 82
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW + ++ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 83 APEVAEEQRSADGTIKWAIKIADQLVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 142
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + +K G R ITN+VMMGMGEPLLN + + A++
Sbjct: 143 FNRNLRVSEIIGQVWRAAKIIGAQKKT-----GVRPITNVVMMGMGEPLLNLNNVVPAME 197
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L D +GLS+R V LSTSG++P +DKL V LA+SLHA + +R++++PI+KKY
Sbjct: 198 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRDRIMPINKKYN 257
Query: 243 LKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
++ + A RY+ S + +T EY +L IND HA +L ++ T CK+NLI
Sbjct: 258 IETFLAAVRRYLEKSNANQGRVTVEYVLLDHINDGTEHAHQLAECLKD----TPCKLNLI 313
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 314 PWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 367
>gi|418357099|ref|ZP_12959803.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida 01-B526]
gi|356689895|gb|EHI54429.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
salmonicida subsp. salmonicida 01-B526]
Length = 367
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 16/355 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL + ELGE PFRA Q+ KWI+ FG DF++M +++ LR++LK I
Sbjct: 6 TNLLDLDRDAMRAFFVELGEKPFRADQIMKWIYHFGCDDFDQMNNVNKVLRERLKAIAEI 65
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66 RAPEVSREQRSSDGTIKWALQVGGQEVETVYIPEEDRATLCVSSQVGCALACKFCSTAQQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W R K + GKR ITN+VMMGMGEPLLN + I A+
Sbjct: 126 GFNRNLKVSEIIGQVW------RAAKIVG----GKRPITNVVMMGMGEPLLNLANVIPAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D YG+S+R V +STSG++P +D L + V LA+SLHA N+ LR++++PI+ KY
Sbjct: 176 RLMMDDFGYGISKRRVTISTSGVVPALDILGDQIDVALAISLHAPNDKLRSEIMPINDKY 235
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + RY+ S + +T EY +L IND HA EL +++ T KINL
Sbjct: 236 NIEDFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELAKVLKD----TPSKINL 291
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + NSRI F+K+LM G V +RK RG+DI+AACGQL G+++
Sbjct: 292 IPFNPFPGNPYGKPSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLVGEVI 346
>gi|392309331|ref|ZP_10271865.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
citrea NCIMB 1889]
Length = 378
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/354 (47%), Positives = 234/354 (66%), Gaps = 10/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFRA Q+ KWI+ FG+ DF +M++++ L+ KL I
Sbjct: 9 NLLDLNREGMRELFASYGEKPFRADQVMKWIYHFGIDDFEQMSNINKKLKAKLSADCEIV 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +ETV+IP+K+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEISVRQEASDGTIKYALVLEGGQEVETVWIPDKDRATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ ++ + KR +TN+VMMGMGEPLLN + + A+
Sbjct: 129 GFNRNLKVSEIIGQVW----RVAKDIGLHDGDSTKRPVTNVVMMGMGEPLLNVNNVVPAM 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D A+GLS+R V LSTSG++P +D L + V LA+SLHA N+LR+ LVPI+KKY
Sbjct: 185 ELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAISLHAPTNDLRDVLVPINKKY 244
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++E + AC RYI S + +T EY ML GIND+ A EL+ +++ T KINLI
Sbjct: 245 PIEEFLAACRRYIDGSKANKDVTIEYVMLQGINDSTDQAHELVKVLKG----TPSKINLI 300
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 301 PFNPFPGNEYGRSSNSRIDRFSKVLQAAGLTCIVRRTRGDDIDAACGQLVGDVV 354
>gi|119944920|ref|YP_942600.1| ribosomal RNA large subunit methyltransferase N [Psychromonas
ingrahamii 37]
gi|205829827|sp|A1SU36.1|RLMN_PSYIN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119863524|gb|ABM03001.1| 23S rRNA m(2)A-2503 methyltransferase [Psychromonas ingrahamii 37]
Length = 372
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + ELGE PFRA+Q+ KWI+ +G DF+ M++++ LR+KLK I
Sbjct: 7 NLLDLNREGLRAFFVELGEKPFRAEQVMKWIYHYGCEDFDLMSNVNKKLRQKLKECAEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I +Q S DGT KW V +ETV+IPEK+R TLCIS+QVGC + C FCST +QG
Sbjct: 67 APEIKVEQRSNDGTIKWAMTVGDQEVETVYIPEKDRATLCISSQVGCVLACNFCSTAQQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL+V EIIGQ+W R K + + + GKR ITN+VMMGMGEPLLN + I A+
Sbjct: 127 FNRNLSVSEIIGQVW------RAAKIVGVTGESGKRPITNVVMMGMGEPLLNLNNLIPAM 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D Y LS+R V +STSG++P +D L V LA+SLHA+N+ LR++++PI+ KY
Sbjct: 181 ELMLDDFGYALSKRRVTVSTSGVVPALDILGDRIDVSLAISLHAANDTLRSQMMPINDKY 240
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + + RYI S R + EY +L ND+ A EL L++ T CKINL
Sbjct: 241 NIADFLAGVKRYIAKSKANRGKVYIEYLLLDHFNDSTDQAHELAILLKD----TPCKINL 296
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP ++ NSR+ F K+LM G VT+RK RG+DI+AACGQL G ++
Sbjct: 297 IPFNPFPGNDYQKPSNSRVDRFNKVLMEYGYTVTVRKTRGDDIDAACGQLVGDVI 351
>gi|56708143|ref|YP_170039.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670614|ref|YP_667171.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis FSC198]
gi|254370628|ref|ZP_04986633.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874946|ref|ZP_05247656.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717383|ref|YP_005305719.1| ribosomal RNA large subunit methyltransferase N [Francisella
tularensis subsp. tularensis TIGB03]
gi|379725987|ref|YP_005318173.1| ribosomal RNA large subunit methyltransferase N [Francisella
tularensis subsp. tularensis TI0902]
gi|385794814|ref|YP_005831220.1| radical SAM protein [Francisella tularensis subsp. tularensis
NE061598]
gi|421755693|ref|ZP_16192635.1| radical SAM protein [Francisella tularensis subsp. tularensis
80700075]
gi|81597446|sp|Q5NG03.1|RLMN_FRATT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123063459|sp|Q14HF5.1|RLMN_FRAT1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|54112615|gb|AAV28941.1| NT02FT0031 [synthetic construct]
gi|56604635|emb|CAG45691.1| Radical SAM superfamily protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320947|emb|CAL09074.1| Radical SAM superfamily protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568871|gb|EDN34525.1| hypothetical protein FTBG_00416 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840945|gb|EET19381.1| radical SAM superfamily protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159349|gb|ADA78740.1| Radical SAM superfamily protein [Francisella tularensis subsp.
tularensis NE061598]
gi|377827436|gb|AFB80684.1| Ribosomal RNA large subunit methyltransferase N [Francisella
tularensis subsp. tularensis TI0902]
gi|377829060|gb|AFB79139.1| Ribosomal RNA large subunit methyltransferase N [Francisella
tularensis subsp. tularensis TIGB03]
gi|409087851|gb|EKM87939.1| radical SAM protein [Francisella tularensis subsp. tularensis
80700075]
Length = 370
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 230/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFI + R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFILAEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLIEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|400405741|ref|YP_006588600.1| 2-vinyl bacteriochlorophyllide hydratase [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400364104|gb|AFP85172.1| 23S rRNA m2A2503 methyltransferase [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 399
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/356 (48%), Positives = 239/356 (67%), Gaps = 15/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD++ K ++ LGE FRA Q+ +WI+ + DF+KMT++ LR KLK I+
Sbjct: 24 NLLDMNRQKMRDFFLSLGEPLFRADQVMRWIYHYYCDDFDKMTNIKKYLRTKLKVLAEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I+ +Q S DGT KW V + +E V+IPE+NR TLC+S+QVGC++ C FCST ++G
Sbjct: 84 APAIVHEQRSSDGTIKWAIRVGEQKVEMVYIPEENRGTLCLSSQVGCSLQCTFCSTAQRG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI--KINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
F RNL V EIIGQ+W R NI K G+ ITNIVMMGMGEPLLN + + A
Sbjct: 144 FNRNLQVSEIIGQVW-------RAANIIGKSKVTGRCSITNIVMMGMGEPLLNLSNVVPA 196
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L D +GLS+RHV LST+G++P +DKL V LA+SLHA N+ +R+KLVPI++K
Sbjct: 197 MEIMLDDCGFGLSKRHVTLSTAGVVPALDKLGDMIDVGLAISLHAPNDTIRDKLVPINRK 256
Query: 241 YPLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y + L+ A RY+ T + +T EY MLH IND HA +L + +++ T CKIN
Sbjct: 257 YNIDTLLSAVRRYLHKTRANHGRVTVEYVMLHYINDDTEHAHQLAACLKE----TPCKIN 312
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIP+N FP++ S NSR+ FA++++ G +RKIRG+DINAACGQL+G+++
Sbjct: 313 LIPWNPFPDAPYKRSSNSRVNRFAQVMIGYGFTTIVRKIRGDDINAACGQLTGEVI 368
>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81419944|sp|Q7N709.1|RLMN_PHOLL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 392
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF +MTD++ LR KL+ I+
Sbjct: 27 NLLDLNRKQMRQFFIDMGEKPFRADQVMKWIYHYCYDDFEQMTDINKILRAKLQQVAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVAEEQRSADGTIKWAITVGDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+ +VPI++KY
Sbjct: 201 EIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDVRDDIVPINRKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + RY+T S + +T EY ML IND+ A +L +++ T KINL
Sbjct: 261 NIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLAECLKE----TPSKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI FAK+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 317 IPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 371
>gi|386311731|ref|YP_006007787.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 397
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + E+GE PFRA Q+ KW++ + DF +MTD++ LR KL+ I+
Sbjct: 32 NLLDLNRQQMREFFAEMGEKPFRADQVMKWMYHYCFDDFEQMTDINKVLRAKLQRVAEIR 91
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DG KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 92 APEVAEEQRSTDGAIKWAIKVGDQQVETVYIPEGDRATLCVSSQVGCALECKFCSTAQQG 151
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G R ITN+VMMGMGEPLLN + + A+
Sbjct: 152 FNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMGEPLLNLNNVVPAM 205
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 206 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 265
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 266 NIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINL 321
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 322 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 376
>gi|260776635|ref|ZP_05885530.1| ribosomal RNA large subunit methyltransferase N [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607858|gb|EEX34123.1| ribosomal RNA large subunit methyltransferase N [Vibrio
coralliilyticus ATCC BAA-450]
Length = 374
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 233/357 (65%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +ELGE FRA+Q+ KWI+ FGV DF KMT+++ LR+KL +
Sbjct: 7 NLLDFDRQGMRKF--FAEELGEKAFRAEQVMKWIYHFGVDDFEKMTNINKKLREKLIHRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPVVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
proteamaculans 568]
gi|205829876|sp|A8GHW8.1|RLMN_SERP5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
Length = 398
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ LR KL++ I+
Sbjct: 33 NLLDLNRQQLREFFAKMGEKPFRADQVMKWMYHYCCDDFEQMTDINKVLRNKLQSVAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVAEEQRSADGTIKWAIKVGDQQVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGALKVTGERPITNVVMMGMGEPLLNLNNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+ +VPI++KY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKIRDDIVPINRKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L +++ T CKINL
Sbjct: 267 NIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLAEVLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 377
>gi|337755452|ref|YP_004647963.1| ribosomal RNA large subunit methyltransferase N [Francisella sp.
TX077308]
gi|336447057|gb|AEI36363.1| Ribosomal RNA large subunit methyltransferase N [Francisella sp.
TX077308]
Length = 370
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 229/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ + + E F A+Q+ KWIHK GV DF+KMTDL +LR KL+ + I
Sbjct: 7 NLLGLNQKAMEEFFVSINEKKFHARQVFKWIHKKGVIDFDKMTDLGKNLRNKLQETSEIF 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S DGT KW+ V + +ETVFIPE R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKDGTHKWLIDVGGSAVETVFIPEDGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L + N + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSSAEVISQLWIAARTLSKN-----NGEHDFSVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA+ ++LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAATDSLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A L+ L+R + KINLIPF
Sbjct: 242 IDELLEACKLYAEKGPHKHITFEYTLMEEVNDNLSDAEGLVELLRSRNV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYRKPSNNRIHRFKEYLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|15803040|ref|NP_289070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EDL933]
gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 384
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+K
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKXX 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPAAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>gi|254228668|ref|ZP_04922092.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
gi|262395120|ref|YP_003286974.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
gi|451970707|ref|ZP_21923932.1| radical SAM enzyme, Cfr family [Vibrio alginolyticus E0666]
gi|151938847|gb|EDN57681.1| radical SAM enzyme, Cfr family [Vibrio sp. Ex25]
gi|262338714|gb|ACY52509.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. Ex25]
gi|451933435|gb|EMD81104.1| radical SAM enzyme, Cfr family [Vibrio alginolyticus E0666]
Length = 375
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF KMT+++ LR+KL + I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLREKLLHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW +V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMNVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 ELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
Length = 378
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + ++ E+GE PFRA Q+ KWI+ + DF +M+D++ LR KL+ I+
Sbjct: 12 NLLDLNRQQLRHFFIEMGEKPFRADQVMKWIYHYCYDDFEQMSDINKVLRTKLQQIAEIR 71
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 72 APEVAQEQRSADGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGCALECTFCSTAQQG 131
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 132 FSRNLRVAEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D +GLS+R V LSTSG++P +DKL V LA+SLHA + +R+++VPI++KY
Sbjct: 186 DIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDEIRDEIVPINRKY 245
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + A RY+ S + +T EY ML IND+ A +L ++ T CKINL
Sbjct: 246 NIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQLAECLKN----TPCKINL 301
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+L+ G +RK RG+DI+AACGQL+G+++
Sbjct: 302 IPWNPFPGAPYGRSSNSRVDRFSKVLIQYGFTTIVRKTRGDDIDAACGQLAGEVI 356
>gi|269962413|ref|ZP_06176763.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832909|gb|EEZ87018.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 375
Score = 335 bits (860), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 233/357 (65%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKE-------TGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM++ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKE----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|424038688|ref|ZP_17777220.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
gi|408893832|gb|EKM30909.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
Length = 375
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDSMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKE-------TGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|417320649|ref|ZP_12107192.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
gi|328472598|gb|EGF43461.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus 10329]
Length = 375
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 234/357 (65%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM++ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKE----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|300724166|ref|YP_003713483.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila
ATCC 19061]
gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
nematophila ATCC 19061]
Length = 392
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 233/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ LR KL+ IK
Sbjct: 27 NLLDLNRKQMRQFFIDMGEKPFRADQVMKWMYHYCYDDFEQMTDINKVLRAKLQQVAEIK 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVAEEQRSSDGTIKWAITVGDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 201 EIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRDEIVPINRKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RY+T S + +T EY ML +ND+ A +L ++ T KINL
Sbjct: 261 NIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQLAECLKD----TPSKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 317 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 371
>gi|375264584|ref|YP_005022027.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. EJY3]
gi|369839908|gb|AEX21052.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. EJY3]
Length = 375
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREVGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|322515331|ref|ZP_08068328.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
gi|322118707|gb|EFX90919.1| cfr family radical SAM enzyme [Actinobacillus ureae ATCC 25976]
Length = 393
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL++L+ + E+ E PFRA QL KWI+ FG +F+ M++++ LR+KLK IK
Sbjct: 28 NLMNLTRQEMRELFAEMDEKPFRADQLMKWIYHFGEDNFDNMSNINKVLREKLKQIAEIK 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V IETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVSVEQRSSDGTIKWAMQVGDQQIETVYIPEADRATLCVSSQVGCALACKFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + I A+
Sbjct: 148 FNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNLNNVIPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D AYGLS+R V LST+G++P D + ++ V LA+SLHA N+ LR++++PI+KKY
Sbjct: 202 EIMLDDFAYGLSKRRVTLSTAGVVPAFDIMREKIDVALAISLHAPNDELRDEIMPINKKY 261
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K L+ + H+Y+ S + +T EY +L +ND HA +L +++ T CKINL
Sbjct: 262 NIKMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLAEVLKN----TPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F K LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 318 IPWNPFPEAPYGKSSNSRVDRFQKTLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 372
>gi|422023278|ref|ZP_16369783.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
gi|414094046|gb|EKT55716.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
Length = 384
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF++MTD++ +LR KLK I+
Sbjct: 19 NLLDLNRKQMREFFAQMGEKPFRADQVMKWIYHYCYDDFDQMTDINKALRAKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVSEEQRSADGTIKWAITVGGQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++P +DKL V LA+SLHA + +R+ ++PI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDEIRDDIMPINKKY 252
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RY++ S + +T EY ML IND+ HA +L ++ T KINL
Sbjct: 253 NIETFLGSVRRYLSKSNANSGRVTVEYVMLDHINDSTEHAHQLAECLKD----TPSKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVI 363
>gi|345863302|ref|ZP_08815514.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125763|gb|EGW55631.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 365
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 228/353 (64%), Gaps = 17/353 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNL++L + ELG F + + KWIHK GV DFN+MTD+S LR +L++ I
Sbjct: 7 TNLMELDQRSMERFFVELGSKAFHGRNVFKWIHKQGVIDFNQMTDISKRLRVQLESLAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ +Q + DGTRKW+ + IETV+IP+ R+T+C+S+QVGCA+NC FCST R
Sbjct: 67 RLPELVFEQPARDGTRKWVLQLDDGQRIETVYIPDGERSTICVSSQVGCALNCSFCSTAR 126
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+V EIIGQ+WV +L TNIV+MGMGEPL N+ + + A
Sbjct: 127 QGFNRNLSVAEIIGQVWVASRELGHPP------------TNIVLMGMGEPLANFDAVVTA 174
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++ D AY LS+ V +STSGI+P + +L + V LAVSLHA N LR++LVPI++K
Sbjct: 175 MDIMQDDSAYMLSKYRVTISTSGIVPALRQLREVSDVSLAVSLHAPTNELRDQLVPINQK 234
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+ELI AC +I R IT+EY ML GIND+ HA LI L+ T K+NLI
Sbjct: 235 YPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIRLLEG----TPSKLNLI 290
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP ++ S R+++F + LM +GI RK RG DI+AACGQL G++
Sbjct: 291 PFNPFPGTSYKTSPPERVEVFRQRLMKAGIISITRKTRGEDIDAACGQLVGRV 343
>gi|88703674|ref|ZP_01101390.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
gi|88702388|gb|EAQ99491.1| Radical SAM superfamily protein [Congregibacter litoralis KT71]
Length = 381
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 232/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL +S + + E+GE FRA+QL KW+H G DF+ M++L +LR++L ++
Sbjct: 15 NLFGMSRTQLEAFFLEMGEKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERLSAIAEVR 74
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + S S DGTRKW+ HV ++ETV IP+ NR TLC+S+QVGC+++C FCSTG+Q
Sbjct: 75 PPVVESQHDSSDGTRKWLVHVDGGGLVETVLIPDGNRATLCVSSQVGCSLDCSFCSTGKQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+L+ EIIGQ+W L + S R +TN+VMMGMGEPLLN+ + + A+
Sbjct: 135 GFQRDLSAAEIIGQVW-----LAIKSYDAFQSGNGRVVTNVVMMGMGEPLLNFDNVVTAM 189
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D YG+S+R V LSTSG++P +DKLA+ LAVSLHA N+ LRN+LVP++++Y
Sbjct: 190 NLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLHAPNDELRNQLVPVNRRY 249
Query: 242 PLKELILACHRYITY--SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ +L+ + RYI + ++T EY ++ GIND A EL L+ CKINL
Sbjct: 250 PIAQLLASAQRYIDAQKDKKRVVTIEYTLMAGINDQPEQARELALLLAD----FPCKINL 305
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FPNS + + F ++L+++G VT+R RG+DI+AACGQL G+++
Sbjct: 306 IPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQLVGEVV 360
>gi|91225141|ref|ZP_01260363.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
gi|91190084|gb|EAS76355.1| hypothetical protein V12G01_12975 [Vibrio alginolyticus 12G01]
Length = 375
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF KMT+++ LR+KL + I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLREKLLHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 ELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDEMDHARELAELMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|421493317|ref|ZP_15940674.1| YFGB [Morganella morganii subsp. morganii KT]
gi|400192485|gb|EJO25624.1| YFGB [Morganella morganii subsp. morganii KT]
Length = 395
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF+ MTD++ LR KLK I+
Sbjct: 30 NLLDLTRKEMRQFFADMGEKPFRADQVMKWIYHYCYDDFDLMTDINKVLRTKLKAVAEIR 89
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 90 APEVSEEQRSADGTIKWAIRVGDQEVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 149
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + A+
Sbjct: 150 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLTHVVPAM 203
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++P +DKL V LA+SLHA +++R+++VPI+KKY
Sbjct: 204 EIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDDVRDEIVPINKKY 263
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RY+ S + +T EY ML IND+ A +L + ++ T KINL
Sbjct: 264 NIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDSTDQAHQLAACLKD----TPSKINL 319
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI FAK+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 320 IPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 374
>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410862372|ref|YP_006977606.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410819634|gb|AFV86251.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
Length = 372
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/356 (47%), Positives = 234/356 (65%), Gaps = 12/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+L+ N+ KE+GE PFRA Q+ KWI++ GVSDF +M++L+ +LR L + I
Sbjct: 4 TNLLNLNREGLRNFFKEMGEKPFRADQVMKWIYQHGVSDFEEMSNLNKNLRAMLIENCEI 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP I Q + DGT K+ ++ +E+V+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 64 KAPEIAYFQEASDGTIKFALTLEGGQEVESVWIPETDRATLCVSSQVGCALECTFCSTAQ 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+V EIIGQ+W L K+ KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 124 QGFNRNLSVSEIIGQVWRVATFLGLSKD-----SSKRPITNVVMMGMGEPLLNLKNVVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++L D +GLS+R V LSTSG++P +D L + V LA+SLHA + LRN++VP++KK
Sbjct: 179 MDIMLDDFGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPTDELRNEIVPVNKK 238
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + RY+ S + +T EY ML IND+ A +L +++ T KIN
Sbjct: 239 YNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQLAKVLKD----TPSKIN 294
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S CS NSRI F+K+LM G +RK RG+DI+AACGQL G ++
Sbjct: 295 LIPFNPYPGSPYTCSSNSRIDRFSKVLMEYGFTTVVRKTRGDDIDAACGQLVGDVV 350
>gi|410085619|ref|ZP_11282338.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455738863|ref|YP_007505129.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
gi|409768328|gb|EKN52392.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455420426|gb|AGG30756.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
Length = 392
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KWI+ + DF+ MTD++ LR KLK I+
Sbjct: 27 NLLDLTRKEMRQFFADMGEKPFRADQVMKWIYHYCYDDFDLMTDINKVLRTKLKAVAEIR 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVSEEQRSADGTIKWAIRVGDQEVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLTHVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++P +DKL V LA+SLHA +++R+++VPI+KKY
Sbjct: 201 EIMLDDFGFGLSKRRVTISTSGVVPALDKLGDMIDVALAISLHAPTDDVRDEIVPINKKY 260
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + + RY+ S + +T EY ML IND+ A +L + ++ T KINL
Sbjct: 261 NIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDSTDQAHQLAACLKD----TPSKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI FAK+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 317 IPWNPFPGAPYGRSSNSRIDRFAKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 371
>gi|433656884|ref|YP_007274263.1| Ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus BB22OP]
gi|432507572|gb|AGB09089.1| Ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus BB22OP]
Length = 375
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 233/357 (65%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKE-------TGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|424032150|ref|ZP_17771570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|424045068|ref|ZP_17782635.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
gi|408876155|gb|EKM15284.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|408886922|gb|EKM25572.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
Length = 375
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKE-------TGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|421751763|ref|ZP_16188802.1| radical SAM protein [Francisella tularensis subsp. tularensis
AS_713]
gi|409087100|gb|EKM87210.1| radical SAM protein [Francisella tularensis subsp. tularensis
AS_713]
Length = 370
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 230/352 (65%), Gaps = 7/352 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ +GE F A+Q+ KWIHK GV DF+ MTDL +LR KLK I
Sbjct: 7 NLLGLNQKAIEDFFISIGEKKFHARQVFKWIHKKGVIDFDAMTDLGKNLRHKLKEKAQIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P ++ + S GT KW+ V + +ETVFI E+ R TLC+S+QVGC +NC FCSTG+QG
Sbjct: 67 IPKVVFSKASKYGTHKWLIDVGGSAVETVFILEEGRGTLCVSSQVGCTLNCSFCSTGKQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL+ E+I QLW+ L K + + +TNIVMMGMGEPL+N+++ + A+
Sbjct: 127 FNRNLSAAEVIAQLWIAARTLS-----KTDGEHDFTVTNIVMMGMGEPLMNFENVVPAMD 181
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+++ D AYGLSRR V LSTSG++P I L ++ V LAVSLHA N+ LRN++VPI+KKY
Sbjct: 182 IMMDDLAYGLSRRKVTLSTSGVVPRIYDLLEQSGVSLAVSLHAPNDMLRNEIVPINKKYN 241
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
+ EL+ AC Y P ITFEY ++ +ND A EL++L++ ++ KINLIPF
Sbjct: 242 IDELLEACKLYAQKGPHKHITFEYTLMEEVNDNLSDAEELVALLKSREV--PAKINLIPF 299
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
N +P + N+RI F + L ++G T+RK RG+DI+AACGQL+G ++
Sbjct: 300 NPYPGTPYKKPSNNRIHRFKEFLQHNGFVTTVRKTRGDDIDAACGQLAGDVM 351
>gi|345877760|ref|ZP_08829498.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225211|gb|EGV51576.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 379
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 228/353 (64%), Gaps = 17/353 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNL++L + ELG F + + KWIHK GV DFN+MTD+S LR +L++ I
Sbjct: 21 TNLMELDQRSMERFFVELGSKAFHGRNVFKWIHKQGVIDFNQMTDISKRLRVQLESLAEI 80
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++ +Q + DGTRKW+ + IETV+IP+ R+T+C+S+QVGCA+NC FCST R
Sbjct: 81 RLPELVFEQPARDGTRKWVLQLDDGQRIETVYIPDGERSTICVSSQVGCALNCSFCSTAR 140
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+V EIIGQ+WV +L TNIV+MGMGEPL N+ + + A
Sbjct: 141 QGFNRNLSVAEIIGQVWVASRELGHPP------------TNIVLMGMGEPLANFDAVVTA 188
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++ D AY LS+ V +STSGI+P + +L + V LAVSLHA N LR++LVPI++K
Sbjct: 189 MDIMQDDSAYMLSKYRVTISTSGIVPALRQLREVSDVSLAVSLHAPTNELRDQLVPINQK 248
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+ELI AC +I R IT+EY ML GIND+ HA LI L+ T K+NLI
Sbjct: 249 YPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIRLLEG----TPSKLNLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP ++ S R+++F + LM +GI RK RG DI+AACGQL G++
Sbjct: 305 PFNPFPGTSYKTSPPERVEVFRQRLMKAGIISITRKTRGEDIDAACGQLVGRV 357
>gi|410663508|ref|YP_006915879.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025865|gb|AFU98149.1| radical SAM enzyme, Cfr family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 385
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 234/355 (65%), Gaps = 12/355 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL LS K + + +GE FRA+Q+ KWIH+ GV DF++MT++S LR KLK+ I
Sbjct: 14 TNLLGLSQSKMEAFFESIGEKRFRAQQVLKWIHQLGVVDFDEMTNISKDLRNKLKDVAEI 73
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M S DGTRK++ V+ + +ETVFIP+ R TLC+S+Q+GC+++C FC+TG+
Sbjct: 74 RFPEVMKQLDSVDGTRKFLIKVEGGSAVETVFIPDGERGTLCVSSQIGCSLDCSFCATGK 133
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF R+LT EII Q+W+ ++ G R++TN+V+MGMGEPLLN+ + + A
Sbjct: 134 QGFNRDLTAAEIIAQVWIAAKSFG-----QLGVNGPRKVTNVVLMGMGEPLLNFDNVVDA 188
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L++ D+ YG+S+R V LSTSG++P +D+L + LA+SLHA N+ LRN+LVPI+KK
Sbjct: 189 MSLMMHDNCYGISKRRVTLSTSGVVPALDRLGEYTDACLAISLHAPNDALRNELVPINKK 248
Query: 241 YPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP+ L+ + RYI P IT EY ++ +ND HA EL L+R KIN
Sbjct: 249 YPIAMLLDSAKRYIEQLPDTHRKITIEYTLIDHVNDRPEHAHELAELLRD----VPVKIN 304
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN F S+ N+ ++ F IL+ SG T+R RG+DI+AACGQL+G +
Sbjct: 305 LIPFNPFSQSDYKRVSNNALRRFQTILIESGYVTTVRTTRGDDIDAACGQLAGSV 359
>gi|421080362|ref|ZP_15541296.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
gi|401705215|gb|EJS95404.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
Length = 400
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 234/359 (65%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 35 NLLDLNRQQMRDLFMSMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 94
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 95 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 154
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 155 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 204
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 205 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 264
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 265 NKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 320
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 321 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 379
>gi|269965168|ref|ZP_06179302.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269830154|gb|EEZ84381.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 375
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF KMT+++ LR+KL I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLREKLLYKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 ELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|156973378|ref|YP_001444285.1| ribosomal RNA large subunit methyltransferase N [Vibrio harveyi
ATCC BAA-1116]
gi|388601640|ref|ZP_10160036.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
DS40M4]
gi|444426831|ref|ZP_21222235.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|205829926|sp|A7MU39.1|RLMN_VIBHB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
gi|444239929|gb|ELU51482.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 375
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 231/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFADELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|350530359|ref|ZP_08909300.1| ribosomal RNA large subunit methyltransferase N [Vibrio
rotiferianus DAT722]
Length = 375
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKE-------TGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
Length = 375
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 231/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL+ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKSFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQYKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L IND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHINDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|28897379|ref|NP_796984.1| ribosomal RNA large subunit methyltransferase N [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838534|ref|ZP_01991201.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
gi|260363554|ref|ZP_05776383.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
gi|260876339|ref|ZP_05888694.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
gi|260898610|ref|ZP_05907106.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
gi|260899290|ref|ZP_05907685.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
gi|81728415|sp|Q87S19.1|RLMN_VIBPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|28805591|dbj|BAC58868.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149748049|gb|EDM58908.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ3810]
gi|308086920|gb|EFO36615.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus Peru-466]
gi|308092880|gb|EFO42575.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AN-5034]
gi|308106603|gb|EFO44143.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus AQ4037]
gi|308113028|gb|EFO50568.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus K5030]
Length = 375
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/357 (47%), Positives = 233/357 (65%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KL++ I
Sbjct: 7 NLLDFDRKGMRQFFAEELGEKAFRADQVMKWIYHFGVDDFDNMTNINKKLREKLQHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKE-------TGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMGHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|406936421|gb|EKD70145.1| hypothetical protein ACD_46C00621G0003, partial [uncultured
bacterium]
Length = 342
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 167/328 (50%), Positives = 222/328 (67%), Gaps = 10/328 (3%)
Query: 27 KQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKK- 85
+Q+ KWIH GV +F+ MT+LS LRKKL I P I+ ++ + DGT KW+ +
Sbjct: 1 QQVLKWIHFNGVDNFDAMTNLSKDLRKKLAEKAEIIIPQILFEKAASDGTHKWLLRLNDG 60
Query: 86 NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRR 145
N IETVFIPEK R TLCIS+QVGC +NC FCSTG+QGF RNLT E+I QLW+ KL
Sbjct: 61 NCIETVFIPEKTRGTLCISSQVGCILNCDFCSTGKQGFNRNLTTAEMISQLWIAVRKLSL 120
Query: 146 EKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII 205
++ I ++ +TN+VMMGMGEPLLN+ + + AL L+L D AYGLS+R V +ST+G++
Sbjct: 121 QQGIHDHA-----VTNVVMMGMGEPLLNFDNVLPALNLMLDDFAYGLSKRRVTVSTAGVV 175
Query: 206 PMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFE 265
P++ +L + V LAVSLHA N+ LRNK+VP++KKYPLKEL+ C Y R IT E
Sbjct: 176 PIMYQLREMSEVALAVSLHAPNDELRNKIVPLNKKYPLKELMAVCREYFKDDNRRSITME 235
Query: 266 YCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKIL 325
Y ML +ND+ IHA +LI L+ K+NLIPFN FP+++ S I F IL
Sbjct: 236 YVMLANVNDSPIHAKQLIKLLDG----VRAKVNLIPFNPFPHTDYQRSDTETIMRFRDIL 291
Query: 326 MNSGIFVTIRKIRGNDINAACGQLSGKI 353
M +G+ TIR+ RG+DI+AACGQL G++
Sbjct: 292 MQAGLNTTIRRTRGDDIDAACGQLVGQV 319
>gi|417476930|ref|ZP_12171284.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353639177|gb|EHC84531.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
Length = 401
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 233/351 (66%), Gaps = 13/351 (3%)
Query: 7 LSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHI 66
L+PL + K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP +
Sbjct: 40 LNPLFGNVFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEV 99
Query: 67 MSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRN 126
+ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RN
Sbjct: 100 VEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRN 159
Query: 127 LTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLIL 185
L V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A++++L
Sbjct: 160 LRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIML 213
Query: 186 SDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKE 245
D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++
Sbjct: 214 DDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIET 273
Query: 246 LILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN 303
+ A RY+ S + +T EY ML +ND HA +L L+++ T CKINLIP+N
Sbjct: 274 FLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINLIPWN 329
Query: 304 CFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 330 PFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 380
>gi|37678948|ref|NP_933557.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
YJ016]
gi|81758246|sp|Q7MNF3.1|RLMN_VIBVY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
Length = 374
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVN-YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRELFAQELGEKAFRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 VAPVVSEAQHSSDGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREVGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|385870746|gb|AFI89266.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium sp.
SCC3193]
Length = 400
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 233/359 (64%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 35 NLLDLNRQQMRELFMSMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 94
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 95 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 154
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 155 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 204
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 205 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 264
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 265 NKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 320
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 321 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 379
>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae WPP163]
gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
Length = 400
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 233/359 (64%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 35 NLLDLNRQQMRELFMSMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 94
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 95 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 154
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 155 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 204
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 205 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 264
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 265 NKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 320
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 321 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 379
>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 419
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 166/359 (46%), Positives = 234/359 (65%), Gaps = 21/359 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KWI+ + DFN+MTD++ R KL+ I+
Sbjct: 54 NLLDLNRQQMRDLFISMGEKPFRADQVMKWIYHYCCDDFNQMTDINKVFRSKLQEIAEIR 113
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +QG
Sbjct: 114 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQG 173
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
F RNL V EIIGQ+W + FK+ G+R ITN+VMMGMGEPLLN +
Sbjct: 174 FNRNLRVSEIIGQVWRAAKIIGAFKV----------TGQRPITNVVMMGMGEPLLNLTNV 223
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI
Sbjct: 224 VPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPI 283
Query: 238 SKKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+KKY ++ + A RY+ S + +T EY ML IND HA +L ++ T C
Sbjct: 284 NKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPC 339
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 340 KINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 398
>gi|254786618|ref|YP_003074047.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
gi|237685384|gb|ACR12648.1| 23S rRNA m2A2503 methyltransferase [Teredinibacter turnerae T7901]
Length = 399
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 161/356 (45%), Positives = 242/356 (67%), Gaps = 13/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + + LGE FRA Q+ KW+H+ GV+DF +MT++S +LR++L + ++
Sbjct: 21 NLLGMSQGRLEAFFESLGEKKFRATQVLKWVHQLGVTDFAQMTNISKALRERLADIAEVR 80
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ S DGTRK++ V N IETVFIP+ R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 81 IPEVIEQWDSTDGTRKFLIRVGGGNAIETVFIPDGERGTLCVSSQVGCSLDCSFCATGKQ 140
Query: 122 GFVRNLTVGEIIGQLWVT--EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF R+LT EIIGQ+W+ F +E ++G R++TN+V+MGMGEPLLN+++ +
Sbjct: 141 GFNRDLTSDEIIGQVWIAAKSFGQLQEGG----ARGDRKVTNVVLMGMGEPLLNFENVVE 196
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+ L++ D+ YG+S+R V LSTSG++P +D+L + LA+SLHA N+ LRN+LVPI+K
Sbjct: 197 AMHLMMHDNCYGISKRRVTLSTSGVVPQLDRLGKYTDACLAISLHAPNDELRNQLVPINK 256
Query: 240 KYPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KYP+ +L+ + RYI P IT EY ++ +ND HA EL+ L++ KI
Sbjct: 257 KYPIAQLLASAKRYIEGLPDAHRKITIEYTLIDQVNDRIEHAHELVELLKD----VPVKI 312
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN F SN N+ ++ F +IL+++G T+R RG+DI+AACGQL+G++
Sbjct: 313 NLIPFNPFGLSNYKKVSNNALRRFQQILIDAGYTATVRTTRGDDIDAACGQLAGQV 368
>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
gi|341941982|sp|Q8DEZ6.2|RLMN_VIBVU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
Length = 374
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVN-YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KWI+ FGV DF+ MT+++ LR+KLK I
Sbjct: 7 NLLDFDRKGMRELFAQELGEKAFRADQVMKWIYHFGVDDFDNMTNINKQLREKLKQKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 VAPVVSEAQHSSDGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREVGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 DIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAQLMKD----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 235/356 (66%), Gaps = 16/356 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS + + +GE FRA+Q+ KWIH F +MTD+ +LR+KL I+
Sbjct: 8 NLLGLSRPQMEEFFLTMGEKKFRAQQVLKWIHHHQADSFEQMTDVGKALRQKLSEVAEIR 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + + IS DGTRKW+F + +ETVFIP+ R TLC+S+QVGCA++C FCSTG+Q
Sbjct: 68 GPKVTHESISRDGTRKWVFEMDNGGAVETVFIPDGRRGTLCVSSQVGCAVDCSFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R++T EIIGQ+W +N+ G+ ITN+VMMGMGEPLLNY + A+
Sbjct: 128 GFQRDMTSAEIIGQVWQASRAFGPRRNL-----GQHPITNVVMMGMGEPLLNYDKVLTAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ D YG+ ++ + +STSG+IP +++L+++ V LAVSLHA N+ LRN+LVP+++KY
Sbjct: 183 RIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLDVSLAVSLHAPNDELRNQLVPLNRKY 242
Query: 242 PLKELILACHRY---ITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
PLK+L+ AC Y IT+ RH IT EY ML +ND HA +L+ L+ N I K+
Sbjct: 243 PLKDLMAACKSYSKNITH--RHNTITMEYVMLRDVNDKPEHARQLVKLL--NGI--PVKV 296
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP++ S+ + I F K L ++G+ T+R RG+DI+AACGQL G++
Sbjct: 297 NLIPFNPFPHAGYERSRKNDILEFHKYLNDNGVMTTVRTTRGDDIDAACGQLVGQV 352
>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
Length = 399
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 163/355 (45%), Positives = 234/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MT+++ LR KL+ I+
Sbjct: 34 NLLDLNRQQMREFFSQMGEKPFRADQVMKWMYHYCCDDFEQMTEINKVLRNKLQRVAEIR 93
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 94 APEVAEEQCSADGTIKWAIKVGDQQVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQG 153
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 154 FNRNLRVSEIIGQVW------RAAKIIGALKIAGERPITNVVMMGMGEPLLNLNNVVPAM 207
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +RN++VPI++ Y
Sbjct: 208 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKIRNEIVPINRNY 267
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND+ A +L ++++ T CKINL
Sbjct: 268 NIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLANVLKN----TPCKINL 323
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ FAK+LM G +R+ RG+DI+AACGQL+G+++
Sbjct: 324 IPWNPFPAAPYGRSSNSRVDRFAKVLMEYGFTTIVRRTRGDDIDAACGQLAGEVI 378
>gi|307543979|ref|YP_003896458.1| hypothetical protein HELO_1390 [Halomonas elongata DSM 2581]
gi|307216003|emb|CBV41273.1| K06941 [Halomonas elongata DSM 2581]
Length = 378
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 232/357 (64%), Gaps = 17/357 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL ++ + + +GE FRA Q+ KWIH+ G SDF MT+LS +LR +L I+
Sbjct: 14 NLLGMTREEMEAFFLSIGEKKFRAAQVMKWIHQEGCSDFASMTNLSKALRAQLSEVAEIR 73
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCSTG 119
P ++ + S DGTRKW+ V+ + +ETV IP N R TLC+S+QVGC+++C FCSTG
Sbjct: 74 GPSVVYEGTSSDGTRKWVLEVEDGSYVETVLIPADNGKRRTLCVSSQVGCSLDCSFCSTG 133
Query: 120 RQGFVRNLTVGEIIGQLWVTE--FKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNLT EIIGQ+WV F R + R +TN+VMMGMGEPLLNY +
Sbjct: 134 KQGFQRNLTAAEIIGQVWVASNSFGPRHDT-------ANRPVTNVVMMGMGEPLLNYDNV 186
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A+KL+L D+ Y LS+R V LSTSG++PM+D+L E V LA+SLHA+N+ LR++LVP+
Sbjct: 187 VPAMKLMLDDNGYSLSKRRVTLSTSGVVPMLDRLGDELDVSLAISLHAANDELRSELVPL 246
Query: 238 SKKYPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KY ++ L+ AC RY+ M+T EY ++ +ND HA +L L+++ K
Sbjct: 247 NRKYNIRTLLDACQRYLAKCDDTRMVTIEYTLIKDVNDQQEHARQLAELLQE----LPSK 302
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
INLIPFN FP+S +++K F + L + G IR RG+DI+AACGQL G++
Sbjct: 303 INLIPFNPFPHSGYETPSRNQVKRFQQWLADLGYTAPIRSTRGDDIDAACGQLVGRV 359
>gi|407793032|ref|ZP_11140067.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
xiamenensis 10-D-4]
gi|407215392|gb|EKE85231.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
xiamenensis 10-D-4]
Length = 378
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + KELGE PFRA Q+ KW++ + V DF+ M++L+ LR+KLK+ I+
Sbjct: 10 NLLDLDREGMREFFKELGEKPFRADQVLKWLYHYCVDDFDDMSNLNKKLREKLKHIAEIR 69
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q S DGT K++ + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 70 APEIRLQQQSSDGTIKFVMTLFDGQDVETVWIPESDRATLCVSSQVGCALECTFCSTAQQ 129
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K + ++ G + +TN+VMMGMGEPLLN K+ + A
Sbjct: 130 GFNRNLRVAEIIGQVW------RVNKLLGAYAETGVKAVTNVVMMGMGEPLLNLKNVVPA 183
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D + ++ V LA+SLHA ++ LR+++VPI+KK
Sbjct: 184 MRLMMDDWGFGLSKRRVTLSTSGVVPALDLMKEQIDVALAISLHAPDDALRDQIVPINKK 243
Query: 241 YPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP+ E + A RYI S + +T EY ML +ND+ E + K T K+NL
Sbjct: 244 YPIAEFLAASRRYIDGSKANKAVTVEYVMLDHVNDS----TEQAHALAKTLAGTPSKVNL 299
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI FAK+LM+ G+ V +RK RG+DI+AACGQL G ++
Sbjct: 300 IPFNPFPGNEYGRSSNSRIDRFAKVLMSHGLTVMVRKTRGDDIDAACGQLVGDVV 354
>gi|290476003|ref|YP_003468899.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii
SS-2004]
gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
bovienii SS-2004]
Length = 392
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + ++GE PFRA Q+ KW++ + DF +MTD++ LR KL+ IK
Sbjct: 27 NLLDLNRKQMRQFFIDMGEKPFRADQVMKWMYHYCYDDFEQMTDINKVLRMKLQQVAEIK 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE R TLC+S+QVGCA+ C FCST +QG
Sbjct: 87 APEVAEEQRSADGTIKWAITVGDQQVETVYIPEDERATLCVSSQVGCALECKFCSTAQQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + S G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 147 FNRNLRVSEIIGQVW------RAAKIIGSLKSSGRRPITNVVMMGMGEPLLNLNNVVPAM 200
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +++R+++VPI++KY
Sbjct: 201 EIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMVDVALAISLHAPTDDVRDEIVPINRKY 260
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RY+ S + +T EY ML +ND+ A +L ++ T KINL
Sbjct: 261 NIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQLAECLKD----TPSKINL 316
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 317 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 371
>gi|343494437|ref|ZP_08732699.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
gi|342825342|gb|EGU59841.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
Length = 372
Score = 333 bits (854), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 228/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD Y ELGE FRA Q+ KWI+ FGV DF KMT+++ LR+KL+ I
Sbjct: 7 NLLDFDRKGLRKYFADELGEKAFRADQVMKWIYHFGVDDFEKMTNINKKLREKLQRLTEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSTDGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D +GLS+R V +STSG++ +D++ V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 ELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA +L L++ T KINL
Sbjct: 242 DIEDFLTSVRRYIASSNANRGKVTIEYVLLDHVNDDMEHARQLAELLKD----TPAKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYRKPSNSRIDRFMKTLMKHDYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|343501746|ref|ZP_08739615.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|418481170|ref|ZP_13050218.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342816871|gb|EGU51763.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|384571122|gb|EIF01660.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 375
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + ELGE FRA Q+ KWI+ FGV +F+ MT+++ LR+KL+
Sbjct: 7 NLLDFDRQGLRKF--FADELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLREKLQRRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D A+GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL L++ T CKI
Sbjct: 240 RWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHARELAELLKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|92114968|ref|YP_574896.1| hypothetical protein Csal_2851 [Chromohalobacter salexigens DSM
3043]
gi|123387343|sp|Q1QTL1.1|RLMN_CHRSD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91798058|gb|ABE60197.1| 23S rRNA m(2)A-2503 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 375
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 232/358 (64%), Gaps = 17/358 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL L+ + ++ LGE FRA Q+ KWIH G +DF MT+LS +LR +L+ I
Sbjct: 10 TNLLGLTREEMESFFVSLGEKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRLEELAEI 69
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCST 118
+ P ++ + S DGTRKW+ V+ + +ETV IP + R TLC+S+QVGC+++C FCST
Sbjct: 70 RGPRVVYEGTSQDGTRKWVLEVEDGSYVETVLIPAEGGKRRTLCVSSQVGCSLDCSFCST 129
Query: 119 GRQGFVRNLTVGEIIGQLWVTE--FKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176
G+QGF RNLT EIIGQ+WV F RR+ R +TN+VMMGMGEPLLNY +
Sbjct: 130 GKQGFQRNLTSAEIIGQVWVASNSFGARRDTT-------NRPVTNVVMMGMGEPLLNYDN 182
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ A+KL+L D+ YGLS+R V LSTSG++P +D+L E V LAVSLHA+N+ LRN+LVP
Sbjct: 183 VVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGDELDVSLAVSLHAANDELRNELVP 242
Query: 237 ISKKYPLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+++KY + L+ AC RY+ M+T EY ++ +ND HA EL +L+
Sbjct: 243 LNRKYNIATLLDACRRYLAKCDDTRMLTIEYTLIKDVNDQQHHAEELAALLAD----LPS 298
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
KINLIPFN FP+S +++ F + L + G +R RG+DI+AACGQL G++
Sbjct: 299 KINLIPFNPFPHSGYEKPSRNQVMRFQQWLYDLGYTALVRTTRGDDIDAACGQLVGRV 356
>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
atrosepticum SCRI1043]
gi|81644326|sp|Q6D273.1|RLMN_ERWCT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 398
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + +GE PFRA Q+ KW++ + DFN+MTD++ R KL+ I+
Sbjct: 33 NLLDLNRQQMRDLFMSMGEKPFRADQVMKWMYHYCCDDFNQMTDINKVFRTKLQEIAEIR 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE+ R TLC+S+QVGCA+ C FCST +QG
Sbjct: 93 APEVVDEQRSSDGTIKWAILVGGQRVETVYIPEEERATLCVSSQVGCALECKFCSTAQQG 152
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 153 FNRNLRVSEIIGQVW------RAAKIIGAFKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 206
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA +++RN+++PI+KKY
Sbjct: 207 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDDIRNEIMPINKKY 266
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 267 NIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLAECLKD----TPCKINL 322
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G+++
Sbjct: 323 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGEVV 377
>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 419
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + + +LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 54 NLLDLDRQQMREFFAKLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRNKLKEIAEIR 113
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 114 APEVAEEQRSTDGTIKWAIQVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 173
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 174 FNRNLRVSEIIGQVW------RAAKIIGAHKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 227
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D +GLS+R V LSTSG++P ++KL V LA+SLHA + +R+++VPI++KY
Sbjct: 228 NIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLHAPTDEIRDEIVPINRKY 287
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 288 NIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHAHQLAECLKD----TPCKINL 343
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 344 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 398
>gi|88858483|ref|ZP_01133125.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas tunicata D2]
gi|88820100|gb|EAR29913.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas tunicata D2]
Length = 392
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR Q+ KWI+ FGV +F++M++++ L+ +L+ I
Sbjct: 21 NLLDLNREGMRELFVSFGEKPFRGDQVMKWIYHFGVDNFDEMSNINKKLKARLERECEIV 80
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I + Q++ DGT K+ ++ +ETV+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 81 APEISAKQVAADGTIKYALLLEGGQEVETVWIPEKERATLCVSSQVGCALECTFCSTAQQ 140
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I + +R +TN+VMMGMGEPLLN + + A
Sbjct: 141 GFNRNLKVSEIIGQVW------RVAKDIGLYGDSTRRPVTNVVMMGMGEPLLNINNVVPA 194
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D A+GLS+R V LSTSG++P +D L + V LA+SLHA +N LR+ LVPI+KK
Sbjct: 195 MELMMDDWAFGLSKRRVTLSTSGVVPALDILKERIDVALAISLHAPDNALRDVLVPINKK 254
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML GIND+ A +L+ ++ T K+NL
Sbjct: 255 YPIEEFLAACRRYIDGSKANKDVTVEYVMLDGINDSMEQAHQLVETLKG----TPSKVNL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+KIL +GI +R+ RG+DI+AACGQL G ++
Sbjct: 311 IPFNPFPGNEYGRSSNSRIDRFSKILQAAGITCIVRRTRGDDIDAACGQLVGDVV 365
>gi|254506728|ref|ZP_05118868.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
gi|219550309|gb|EED27294.1| radical SAM enzyme, Cfr family [Vibrio parahaemolyticus 16]
Length = 374
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 232/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + ELGE FRA Q+ KWI+ FGV +F+ MT+++ LR+KL++
Sbjct: 7 NLLDFDRQGMRKF--FADELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLREKLQHRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/355 (44%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + ++ LGE FRA+QL KW+H G DF+ M++L +LR++L ++
Sbjct: 15 NLLGMSRTQLEDFFLGLGEKRFRAQQLMKWMHHQGECDFSAMSNLGKALRERLAAIAEVR 74
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + S S DGTRKW+ V ++ETV IP+ NR TLC+S+QVGC+++C FCSTG+Q
Sbjct: 75 PPPVESQHDSSDGTRKWLVRVDGGGLVETVLIPDGNRATLCVSSQVGCSLDCSFCSTGKQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+L+ EIIGQ+W L S R +TN+VMMGMGEPLLN+ + + A+
Sbjct: 135 GFQRDLSAAEIIGQVW-----LAINSYDAFKSGNGRVVTNVVMMGMGEPLLNFDNVVTAM 189
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D YG+S+R V LSTSG++P +DKLA+ LAVSLHA N+ LRN+LVP++++Y
Sbjct: 190 DLMMDDLGYGISKRRVTLSTSGVVPALDKLAEVSEASLAVSLHAPNDELRNQLVPVNRRY 249
Query: 242 PLKELILACHRYITY--SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P+ +L+ + RYI + ++T EY ++ G+ND A EL +L+ CKINL
Sbjct: 250 PIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELATLLAD----FPCKINL 305
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FPNS + + F ++L+++G VT+R RG+DI+AACGQL G ++
Sbjct: 306 IPFNPFPNSGYERPSGNAVSRFWQVLVDAGFVVTVRTTRGDDIDAACGQLVGDVV 360
>gi|417392623|ref|ZP_12155396.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353611246|gb|EHC63965.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
Length = 363
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 232/355 (65%), Gaps = 22/355 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 7 NLLDF---------KNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 57
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 58 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 117
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 118 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 171
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 172 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKY 231
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L+++ T CKINL
Sbjct: 232 NIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINL 287
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 288 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 342
>gi|365836071|ref|ZP_09377478.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
gi|364564882|gb|EHM42625.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
Length = 419
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + + +LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 54 NLLDLDRQQMREFFAKLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRNKLKEIAEIR 113
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 114 APEVAEEQRSTDGTIKWAIQVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 173
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 174 FNRNLRVSEIIGQVW------RAAKIIGAHKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 227
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D +GLS+R V LSTSG++P ++KL V LA+SLHA + +R+++VPI++KY
Sbjct: 228 NIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLHAPTDEIRDEIVPINRKY 287
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML IND HA +L ++ T CKINL
Sbjct: 288 NIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHAHQLAECLKD----TPCKINL 343
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 344 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 398
>gi|449146973|ref|ZP_21777724.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
gi|449077467|gb|EMB48450.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
Length = 373
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQYSADGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 NIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|417335554|ref|ZP_12118355.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|417532885|ref|ZP_12187111.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
gi|353571081|gb|EHC35147.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|353661789|gb|EHD00996.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
Length = 354
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/343 (47%), Positives = 229/343 (66%), Gaps = 13/343 (3%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
+ K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S D
Sbjct: 1 FFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSD 60
Query: 75 GTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIG 134
GT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIG
Sbjct: 61 GTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIG 120
Query: 135 QLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLS 193
Q+W R K + G+R ITN+VMMGMGEPLLN + + A++++L D +GLS
Sbjct: 121 QVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLS 174
Query: 194 RRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253
+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY
Sbjct: 175 KRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRY 234
Query: 254 ITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
+ S + +T EY ML +ND HA +L L+++ T CKINLIP+N FP +
Sbjct: 235 LEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINLIPWNPFPGAPYG 290
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 291 RSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 333
>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 356
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/341 (48%), Positives = 228/341 (66%), Gaps = 13/341 (3%)
Query: 17 KELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGT 76
K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT
Sbjct: 5 KNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGT 64
Query: 77 RKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQL 136
KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+
Sbjct: 65 IKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 124
Query: 137 WVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
W R K + G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R
Sbjct: 125 W------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKR 178
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+
Sbjct: 179 RVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLE 238
Query: 256 YSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICS 313
S + +T EY ML +ND HA +L L+++ T CKINLIP+N FP + S
Sbjct: 239 KSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINLIPWNPFPGAPYGRS 294
Query: 314 KNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 295 SNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 335
>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
Length = 373
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSAAQHSADGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 NIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|90021078|ref|YP_526905.1| Crp/FNR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|123090598|sp|Q21KT6.1|RLMN_SACD2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|89950678|gb|ABD80693.1| transcriptional regulator, Crp/Fnr family [Saccharophagus degradans
2-40]
Length = 398
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 234/354 (66%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ LS K + LGE FRA Q+ KWIH+ GV+DF +MT++S LR KL
Sbjct: 13 NLMGLSQAKLEAFFDSLGEKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLSQVAEAV 72
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP +++ S DGTRK++ V N +ETV+IP+ +R TLC+S+QVGC+++C FC+TG+Q
Sbjct: 73 APEVVNQWDSSDGTRKFLIRVGGGNAVETVYIPDGDRGTLCVSSQVGCSLDCSFCATGKQ 132
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF R+LT EIIGQ+W + +R+ITN+VMMGMGEPLLN+ + + ++
Sbjct: 133 GFNRDLTAAEIIGQVWQAAKSFN-----QFGVGAQRKITNVVMMGMGEPLLNFDNVVDSM 187
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ D+ YGLS+R V LSTSG++P +DKL + LA+SLHA NN LRN+LVPI+KKY
Sbjct: 188 NLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEYTDACLAISLHAPNNALRNELVPINKKY 247
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P++ L+ + RYI P R +T EY ++ +ND HA EL L++ + KINL
Sbjct: 248 PIEMLLASAKRYIDGLPDVRRKMTIEYTLIDQVNDRPEHAHELAELLKDIPV----KINL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN F SN N+ ++ F +IL+++G T+R RG+DI+AACGQL+G++
Sbjct: 304 IPFNPFNLSNYKRVSNNALRRFQQILIDAGYTTTVRTTRGDDIDAACGQLAGQV 357
>gi|417384855|ref|ZP_12150096.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353607512|gb|EHC61371.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 353
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/341 (48%), Positives = 228/341 (66%), Gaps = 13/341 (3%)
Query: 17 KELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGT 76
K LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT
Sbjct: 2 KNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGT 61
Query: 77 RKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQL 136
KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+
Sbjct: 62 IKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQV 121
Query: 137 WVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
W R K + G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R
Sbjct: 122 W------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKR 175
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+
Sbjct: 176 RVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLE 235
Query: 256 YSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICS 313
S + +T EY ML +ND HA +L L+++ T CKINLIP+N FP + S
Sbjct: 236 KSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINLIPWNPFPGAPYGRS 291
Query: 314 KNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 292 SNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 332
>gi|400406439|ref|YP_006589187.1| 23S rRNA m2A2503 methyltransferase [secondary endosymbiont of
Heteropsylla cubana]
gi|400364692|gb|AFP85759.1| 23S rRNA m2A2503 methyltransferase [secondary endosymbiont of
Heteropsylla cubana]
Length = 366
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 239/355 (67%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD++ + ++ LGE FRA Q+ KWI+ + +DF++MT+++ +LR KLKN I+
Sbjct: 2 NLLDMNRQQLRDFFLSLGEKAFRADQVMKWIYCYFCNDFDQMTNINKNLRTKLKNLAEIR 61
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP I ++ S DGT KW + +E V+IPEK R TLCISTQVGCA+ C FC+T +QG
Sbjct: 62 APKIAQEKRSSDGTIKWSIIIDHQQVEMVYIPEKKRATLCISTQVGCALKCTFCATAQQG 121
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W + K I + N +R ITNIV+MGMGEPLLN + I A+
Sbjct: 122 FNRNLRVSEIIGQVW------QASKIIGLTNPLHRRSITNIVIMGMGEPLLNLTNVIPAI 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P ++ L + V LA+SLHA NN +RN++VPI+ KY
Sbjct: 176 EIMLDDFGFGLSKRRVTLSTSGVVPGLEILGKMIDVTLAISLHAPNNTIRNEIVPINHKY 235
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ L+LA RY+ +S ++ +T EY ML IND HA EL L++ SCKINL
Sbjct: 236 NIEALLLAVSRYLEHSQANKNGVTIEYVMLKQINDKIEHAHELAKLLKN----ISCKINL 291
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FPN+ CS ++ I FAKIL G V IRK RG DI+AACGQLSG+I+
Sbjct: 292 IPWNPFPNAPYTCSSHNHIDRFAKILRGYGFTVIIRKTRGVDIDAACGQLSGEII 346
>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
Length = 373
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSAAQHSADGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 NIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|323491629|ref|ZP_08096808.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
gi|323314205|gb|EGA67290.1| ribosomal RNA large subunit methyltransferase N [Vibrio
brasiliensis LMG 20546]
Length = 375
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/359 (47%), Positives = 234/359 (65%), Gaps = 20/359 (5%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +LGE FRA Q+ KWI+ FGV +F+ MT+++ LR+KL++
Sbjct: 7 NLLDFDRQGMRKF--FADQLGEKAFRADQVMKWIYHFGVDNFDDMTNINKKLREKLQHRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL V EIIGQ+W E L++E G+R ITNIVMMGMGEPLLN K+
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNIVMMGMGEPLLNMKNL 177
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
I AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI
Sbjct: 178 IPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPI 237
Query: 238 SKKYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+ ++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T C
Sbjct: 238 NDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPC 293
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 294 KINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
Length = 380
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/356 (45%), Positives = 231/356 (64%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL +S + + +LGE FRA Q+ KWIH GVSD MT L +LR++L + ++
Sbjct: 18 NLLGMSRAQMEVFFTDLGEKRFRAGQVMKWIHHHGVSDIEAMTTLGKALRERLSSIAEVR 77
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I + S DGTRKW V ++E V IPE +R TLC+S+QVGC+++C FCSTG+Q
Sbjct: 78 PPEIADQKDSADGTRKWAIRVDGGALVEAVLIPEGSRATLCVSSQVGCSLDCKFCSTGKQ 137
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGA 180
GF R+LT EIIGQ+W+ K+ GK R +TN+VMMGMGEPLLN+ + + +
Sbjct: 138 GFQRDLTSAEIIGQVWLAI------KSYDAFQSGKGRVVTNVVMMGMGEPLLNFDNVVSS 191
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ L+ D AYGLS+R V LSTSG++P +DKLA+ V LA+SLH + +RN++VPI+K+
Sbjct: 192 MSLMTDDWAYGLSKRRVTLSTSGVVPALDKLAECSDVSLAISLHGPTDEIRNRIVPINKR 251
Query: 241 YPLKELILACHRYITY--SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
YP+ EL+ + YI + ++T EY +L G+ND HA +L L++ CKIN
Sbjct: 252 YPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLAVLLKD----FPCKIN 307
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN FP+S + + F ++L+++G VT+R RG+DI+AACGQL G+++
Sbjct: 308 LIPFNDFPHSGFTRPSGNAVSRFWQVLIDAGYVVTVRTTRGDDIDAACGQLVGEVV 363
>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|424808315|ref|ZP_18233717.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|342324852|gb|EGU20633.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
Length = 373
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 NIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|90408602|ref|ZP_01216757.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
gi|90310294|gb|EAS38424.1| hypothetical protein PCNPT3_04766 [Psychromonas sp. CNPT3]
Length = 372
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 232/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ + ++GE FRA+Q+ KWI+ +G DF++M++++ LR+KL I
Sbjct: 7 NLLNLNREGLRAFFVDMGEKAFRAEQVMKWIYHYGCDDFSEMSNINKKLREKLTLCAEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW+ V IETV+IPEK+R TLC+S+QVGCA+ C FCST +QG
Sbjct: 67 APEVRVEQRSKDGTIKWVMKVGDQDIETVYIPEKDRATLCVSSQVGCALACNFCSTAQQG 126
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNLTV EIIGQ+W R K + + GKR ITN+VMMGMGEPLLN + I A+
Sbjct: 127 FNRNLTVSEIIGQVW------RAAKIVGVMGESGKRPITNVVMMGMGEPLLNLNNVIPAM 180
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D Y LS+R V +STSG++P +D L V LA+SLHASN+ LR++++PI+ KY
Sbjct: 181 ELMLDDFGYALSKRRVTISTSGVVPALDILGDRIDVALAISLHASNDELRSQMMPINDKY 240
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + + RYI S R +T EY +L ND+ A EL L++ T CKINL
Sbjct: 241 NIADFLAGVKRYIAKSKANRGKVTIEYLLLDHFNDSTDQAHELAILLKD----TPCKINL 296
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP+++ NSR+ F K+LM G V +RK RG+DI+AACGQL G ++
Sbjct: 297 IPFNPFPDNSYKKPSNSRVDRFNKVLMEYGYTVIVRKTRGDDIDAACGQLVGDVI 351
>gi|221133865|ref|ZP_03560170.1| hypothetical protein GHTCC_02964 [Glaciecola sp. HTCC2999]
Length = 389
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 230/356 (64%), Gaps = 12/356 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL+ + +GE PFRA Q+ +WI+ GVS ++M++++ L+ KL I
Sbjct: 20 TNLLDLTRSGMREFLSSIGEKPFRADQIMQWIYHHGVSSVDEMSNINKQLKAKLNTHAEI 79
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
AP I Q + DGT K+ + +E V+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 80 VAPEIAYQQNATDGTIKFALTLNGGQEVEAVWIPETDRATLCVSSQVGCALECTFCSTAQ 139
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+V EIIGQ+W + K+ KR ITN+VMMGMGEPLLN K+ + A
Sbjct: 140 QGFNRNLSVSEIIGQVWRVATTIGLSKDT-----AKRPITNVVMMGMGEPLLNLKNVVPA 194
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D+ +GLS+R V LSTSG++P +D L + V LA+SLHA N+ LR+++VP++KK
Sbjct: 195 MELMMDDYGFGLSKRRVTLSTSGVVPALDMLGDQIDVALAISLHAPNDTLRDEIVPVNKK 254
Query: 241 YPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + RY+ S + +T EY ML IND+ A EL ++ T CKIN
Sbjct: 255 YNIETFLAGVRRYLDKSKANQGKVTVEYVMLSHINDSTDQAHELAKVLSG----TPCKIN 310
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S CS NSRI F+K+LM +G V +RK RG+DI+AACGQL G ++
Sbjct: 311 LIPFNPYPGSPYTCSSNSRIDRFSKVLMAAGYTVMVRKTRGDDIDAACGQLVGDVV 366
>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
gi|225203712|gb|EEG86066.1| 23S rRNA m2A2503 methyltransferase [Proteus penneri ATCC 35198]
Length = 357
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 223/339 (65%), Gaps = 13/339 (3%)
Query: 19 LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRK 78
+GE PFRA Q+ KW++ + DF++MTD++ LR KLK IKAP + +Q S DGT K
Sbjct: 8 MGEKPFRADQIMKWMYHYCYDDFDQMTDINKVLRNKLKEIAEIKAPEVSEEQRSTDGTIK 67
Query: 79 WIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWV 138
W V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W
Sbjct: 68 WAIKVGDQQVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIIGQVW- 126
Query: 139 TEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHV 197
R K I + G+R ITN+VMMGMGEPLLN + I AL++++ D +GLS+R V
Sbjct: 127 -----RAAKIIGSLKETGRRPITNVVMMGMGEPLLNLNNVIPALEIMMDDFGFGLSKRRV 181
Query: 198 ILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257
+STSG++P +DKLA V LA+SLHA +++R+++VPI+KKY + + RYI S
Sbjct: 182 TVSTSGVVPALDKLADAVDVALAISLHAPTDDIRDEIVPINKKYNIAMFLEGVRRYIAKS 241
Query: 258 PRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 315
+ +T EY ML IND+ A +L ++ T CKINLIP+N FP + S N
Sbjct: 242 NANQGRVTVEYVMLDHINDSTEQAHQLAECLKD----TPCKINLIPWNPFPGAPYGRSSN 297
Query: 316 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
SRI F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 298 SRIDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 336
>gi|444377292|ref|ZP_21176524.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
gi|443678582|gb|ELT85250.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
Length = 373
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKF-VNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KW++ FGV DF++M +++ LR+KL I
Sbjct: 7 NLLDFDRQALRAFFAEELGEKAFRADQIMKWMYHFGVDDFDQMNNINKKLREKLNARCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA++C FCST +Q
Sbjct: 67 RAPEVSTAQYSSDGTIKWAMRVGNQDVETVYIPEDDRATLCVSSQVGCALDCKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K I + + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLKVSEIIGQVW------RAAKEIGVEKETGRRPITNVVMMGMGEPLLNMKNLIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L L+L D AYGLS+R V +STSG++ +D++A + V LA+SLHA + LR++++PI+ +
Sbjct: 181 LNLMLDDLAYGLSKRRVTVSTSGVVSGLDQMAGKIDVALAISLHAPTDELRSQIMPINDR 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + + RYI S R +T EY +L +ND HA +L L++ T KIN
Sbjct: 241 YDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHARQLAELLKD----TPAKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S NSRI F K LM V +RK RG+DI+AACGQL G ++
Sbjct: 297 LIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDAACGQLVGDVI 352
>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
Length = 389
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 229/355 (64%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LGE PFRA Q+ KW++ + DF +MTD++ LR KL I+
Sbjct: 24 NLLDLNRQQMREFFVSLGEKPFRADQVMKWMYHYCCDDFEQMTDINKVLRGKLMQLTEIR 83
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + ++ S DGT KW V ++ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 84 APEVAEEKRSSDGTIKWAIRVGDQLVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 143
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 144 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 197
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ LR+ +VPI+KKY
Sbjct: 198 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDKLRDDIVPINKKY 257
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY +L +ND+ A +L L++ T KINL
Sbjct: 258 NIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQLAELLKD----TPSKINL 313
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ F+K+LM G +RK RG+DI+AACGQL+G ++
Sbjct: 314 IPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAACGQLAGDVI 368
>gi|85059741|ref|YP_455443.1| ribosomal RNA large subunit methyltransferase N [Sodalis
glossinidius str. 'morsitans']
gi|123752598|sp|Q2NS37.1|RLMN_SODGM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 393
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 231/355 (65%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD++ + + +GE PFRA Q+ KWI+ + DF++MTD++ LR +LK I+
Sbjct: 28 NLLDMNRQQLREFFSSMGEKPFRADQVMKWIYHYCCDDFDQMTDINKHLRARLKALAEIR 87
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 88 APEVAEEQRSADGTIKWAIKVGDQQVETVYIPEDDRATLCVSSQVGCALQCTFCSTAQQG 147
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K I G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 148 FNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAM 201
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P ++KL V LA+SLHA N+ +R+++VPI++KY
Sbjct: 202 EIMLDDFGFGLSKRRVTLSTSGVVPALEKLGDMIDVALAISLHAPNDTIRDEIVPINRKY 261
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A Y+ S + +T EY ML IND HA +L + ++ T CKINL
Sbjct: 262 NIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQLAACLK----YTPCKINL 317
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSR+ FAK+LM +RK RG+DI+AACGQL+G+++
Sbjct: 318 IPWNPFPGAPYGRSSNSRVDRFAKVLMGYEFTTIVRKTRGDDIDAACGQLAGEVI 372
>gi|343509874|ref|ZP_08747136.1| ribosomal RNA large subunit methyltransferase N [Vibrio scophthalmi
LMG 19158]
gi|343515698|ref|ZP_08752749.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. N418]
gi|342797868|gb|EGU33505.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. N418]
gi|342803671|gb|EGU39021.1| ribosomal RNA large subunit methyltransferase N [Vibrio scophthalmi
LMG 19158]
Length = 374
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 229/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +EL E FRA+Q+ KWI+ FGV DF+ M +++ LR+KLK I
Sbjct: 7 NLLDFDRQGLRTFFAEELNEKAFRAEQVMKWIYHFGVDDFDNMNNINKVLREKLKQRCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPVVSEAQHSSDGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ ++E + + RYI S R +T EY +L IND HA EL LM+ T CKI
Sbjct: 240 RWDIQEFLASVRRYIASSNANRGRVTVEYVLLDHINDGTEHAHELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTTRKTRGDDIDAACGQLVGDVI 352
>gi|407790344|ref|ZP_11137439.1| ribosomal RNA large subunit methyltransferase N [Gallaecimonas
xiamenensis 3-C-1]
gi|407204966|gb|EKE74945.1| ribosomal RNA large subunit methyltransferase N [Gallaecimonas
xiamenensis 3-C-1]
Length = 373
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDLS + + E+ E PFRA Q+ KWI+ FGV +F+ MT+++ LR KLK I+
Sbjct: 7 NLLDLSRNELRAFFAEMDEKPFRADQVMKWIYHFGVDNFDDMTNINKVLRGKLKERCVIE 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I +Q S DGT KW V +ETV+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISQEQRSSDGTIKWALTVSGGQEVETVYIPEKDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W L + N ++ ITN+VMMGMGEPLLN + + A+
Sbjct: 127 GFNRNLKVSEIIGQVWRAAKVLGPQGN-----SNQKPITNVVMMGMGEPLLNLANVVPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L+L D YGLS+R V LSTSG++P +DKL V LA+SLHA + LR+++VPI+KKY
Sbjct: 182 ELMLDDLGYGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTDELRDEIVPINKKY 241
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + + Y+ S + +T EY ML +ND+ A +L ++ T KINL
Sbjct: 242 NIDTFLTSVRGYLAKSNANQGRVTVEYVMLDHVNDSTDQAHQLAQCLKD----TPAKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM G V +RK RG+DI+AACGQL+G ++
Sbjct: 298 IPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDVV 352
>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 396
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 231/355 (65%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 30 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 89
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 90 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 149
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 150 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 204
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 205 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDELRSQIMPINDRW 264
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++E + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 265 NIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKG----TPCKINL 320
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 321 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 375
>gi|312884301|ref|ZP_07744010.1| ribosomal RNA large subunit methyltransferase N [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368074|gb|EFP95617.1| ribosomal RNA large subunit methyltransferase N [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 375
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 230/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + ELGE FRA Q+ KWI+ FGV +F+ MT+++ LR+KL+
Sbjct: 7 NLLDFDRQGLRKF--FADELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLREKLQQRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
+ AP + Q S DGT KW V +ETV+IPE +R TLCIS+QVGCA+ C FCST
Sbjct: 65 TVTAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCISSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQLW ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIIGQLWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D A+GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDALRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ + + + + RYI S R +T EY +L +ND HA EL ++ T CKI
Sbjct: 240 RWNIDDFLASVRRYIQSSNANRGKVTIEYVLLDHVNDDMDHARELSHTLKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM G VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQLGHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|343503626|ref|ZP_08741436.1| ribosomal RNA large subunit methyltransferase N [Vibrio
ichthyoenteri ATCC 700023]
gi|342814418|gb|EGU49362.1| ribosomal RNA large subunit methyltransferase N [Vibrio
ichthyoenteri ATCC 700023]
Length = 374
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 172/357 (48%), Positives = 229/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +EL E FRA+Q+ KWI+ FGV DF+ M +++ LR+KLK I
Sbjct: 7 NLLDFDRQGLCTFFAEELNEKAFRAEQVMKWIYHFGVDDFDNMNNINKVLREKLKQRCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
KAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 KAPVVSEAQHSSDGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 127 GFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ ++E + + RYI S R +T EY +L IND HA EL LM+ T CKI
Sbjct: 240 RWDIQEFLASVRRYIASSNANRGRVTVEYVLLDHINDGTEHAHELAQLMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTTRKTRGDDIDAACGQLVGDVI 352
>gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417955687|ref|ZP_12598696.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342812341|gb|EGU47345.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 374
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/359 (47%), Positives = 233/359 (64%), Gaps = 20/359 (5%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +ELGE FRA Q+ KWI+ FGV +F+ MT+++ LR+KL +
Sbjct: 7 NLLDFDRQGMRKF--FAEELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLREKLLHRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPVVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLW--VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL V EIIGQ+W E L++E G+R ITN+VMMGMGEPLLN K+
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLQKET-------GRRPITNVVMMGMGEPLLNMKNL 177
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
I AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI
Sbjct: 178 IPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDELRSQIMPI 237
Query: 238 SKKYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
+ ++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T C
Sbjct: 238 NDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAVLMKD----TPC 293
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
KINLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 294 KINLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|374314275|ref|YP_005060704.1| 2-vinyl bacteriochlorophyllide hydratase [Serratia symbiotica str.
'Cinara cedri']
gi|363988501|gb|AEW44692.1| 23S rRNA m2A2503 methyltransferase [Serratia symbiotica str.
'Cinara cedri']
Length = 377
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/358 (45%), Positives = 232/358 (64%), Gaps = 19/358 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + + + +++GE PFRA Q+ KWI+ + DF MTD++ LR KL+ I+
Sbjct: 12 NLLDFNRQQMREFFRQIGEQPFRANQVMKWIYHYYCDDFRCMTDINKILRNKLQQIAEIR 71
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IP+++R TLC+S+QVGCA+ C FC+T +QG
Sbjct: 72 APDVIKEQYSVDGTIKWSVGVGTQQVETVYIPDRDRATLCLSSQVGCALECKFCATAQQG 131
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK----RQITNIVMMGMGEPLLNYKSTI 178
F RNL V EIIGQ+W + IKI K R +TNIVMMGMGEPLLN K+ +
Sbjct: 132 FNRNLCVSEIIGQVW---------RAIKIIRAMKFTDARPVTNIVMMGMGEPLLNLKNVV 182
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+K++ D +GLS+R + LSTSG++P +DKL+ V LA+SLHA NN +RN++VP++
Sbjct: 183 SAIKIMQDDFGFGLSKRRITLSTSGVVPALDKLSDMIDVALAISLHAPNNKIRNEIVPMN 242
Query: 239 KKYPLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
KY ++ ++ A RY+ S + +T EY ML +ND+ A +L +++ T CK
Sbjct: 243 SKYNIESVLAAVRRYLAKSKANQGRVTIEYVMLEYVNDSTKDAHQLAEILKS----TPCK 298
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
INLIP+N FP + S NSR+ F K+LM G IR+ RG DI+AACGQL G+++
Sbjct: 299 INLIPWNAFPGAPYSRSANSRVDSFMKVLMKYGFTTIIRRTRGADIDAACGQLVGEVI 356
>gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
Length = 373
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/356 (46%), Positives = 230/356 (64%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKF-VNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KW++ FGV DF++M++++ LR+KLK I
Sbjct: 7 NLLDFDRQALRAFFAEELGEKAFRADQIMKWMYHFGVDDFDQMSNINKVLREKLKARCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA++C FCST +Q
Sbjct: 67 RAPEVSAAQYSADGTIKWAMRVGNQDVETVYIPEDDRATLCVSSQVGCALDCKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K I + + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLKVSEIIGQVW------RAAKEIGVEKETGRRPITNVVMMGMGEPLLNMKNLIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L L+L D YGLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ +
Sbjct: 181 LNLMLDDLGYGLSKRRVTVSTSGVVSGLEQMIGKIDVALAISLHAPNDELRSQIMPINDR 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y ++ + + RYI S R +T EY +L +ND HA +L L++ T KIN
Sbjct: 241 YDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHARQLAELLKD----TPAKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S NSRI F K LM V +RK RG+DI+AACGQL G ++
Sbjct: 297 LIPFNPYPGSPYKKPSNSRIDRFQKTLMQYDYTVIVRKTRGDDIDAACGQLVGDVI 352
>gi|71278436|ref|YP_270905.1| ribosomal RNA large subunit methyltransferase N [Colwellia
psychrerythraea 34H]
gi|123774847|sp|Q47WB7.1|RLMN_COLP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71144176|gb|AAZ24649.1| radical SAM enzyme, Cfr family [Colwellia psychrerythraea 34H]
Length = 386
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 228/355 (64%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ Y + +GE PFRA Q+ KWI+ FG SDF +MT+++ LR+KL+ + I
Sbjct: 9 NLLNFDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQRNCIIS 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q+S DGT K+ ++ +ETV+IPE +R TLC+S+QVGCA+ C FC+T +Q
Sbjct: 69 APDISEKQVSEDGTIKYALKLEGGQEVETVWIPENDRATLCVSSQVGCALECTFCATAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL++ EIIGQ+W R +I G R ITNIVMMGMGEPLLN K+ I A
Sbjct: 129 GFNRNLSMAEIIGQVW------RVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L +L+D YGLS+R V +STSG++P +D L + LA+S+HA NN LR++LVPI+KK
Sbjct: 183 LDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHAPNNKLRDELVPINKK 242
Query: 241 YPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL++ I A RYI S + T EY ML +ND+ A EL ++ KINL
Sbjct: 243 YPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHALKG----LPSKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S S NSRI F K+L + G+ V R+ RG DI+AACGQL+G +
Sbjct: 299 IPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQLAGDVF 353
>gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
Length = 374
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 170/357 (47%), Positives = 229/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + ELGE FRA Q+ KWI+ FGV +F+ MT+++ LR+KL+
Sbjct: 7 NLLDFDRQGLRKF--FADELGEKAFRADQVMKWIYHFGVDNFDNMTNINKKLREKLQRRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP + Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIVAPTVAEAQHSSDGTIKWAMKVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+L+L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR+ ++PI+
Sbjct: 180 ALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPNDKLRSDIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL L++ T CKI
Sbjct: 240 RWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHARELAELLKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|441504685|ref|ZP_20986678.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
gi|441427784|gb|ELR65253.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
Length = 374
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 228/357 (63%), Gaps = 14/357 (3%)
Query: 2 TNLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
TNLLD Y +ELGE FRA Q+ KW++ FG DF++MT+++ LR+KLK
Sbjct: 6 TNLLDFDRKGLRQYFAEELGEKAFRADQIMKWMYHFGCDDFDQMTNINKKLREKLKQVAE 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
I+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 66 IRAPYVSEAQHSSDGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQ 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIG 179
QGF RNL V EIIGQ+W R K I + + G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 126 QGFNRNLRVSEIIGQVW------RAAKEIGVEKETGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ V LA+SLHA + LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPTDELRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ + + + + RYI S R +T EY +L +ND HA +L ++ T KI
Sbjct: 240 RWNIDDFLGSVRRYIASSNANRGRVTVEYVLLDHVNDDMEHARQLAKTLKD----TPAKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSR+ F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRVDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|344343058|ref|ZP_08773928.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
gi|343805610|gb|EGV23506.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
Length = 364
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 221/353 (62%), Gaps = 17/353 (4%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL E G F + L KWIHK GV DF+ MTDL ++LR++L+ I
Sbjct: 8 TNLLDLDRADCEALAVEFGRKAFHGRNLFKWIHKHGVVDFDAMTDLPLALRQQLRERTEI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P I+ S DGT KW+ + IETVFIPE R+T+C+S+QVGCA++C FC+T +
Sbjct: 68 RLPRIVHAHPSADGTIKWVMELTDGQHIETVFIPEGRRSTICVSSQVGCALDCRFCATAK 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL V EII Q+W L+ TN+VMMGMGEPL N+ + + A
Sbjct: 128 QGFNRNLAVSEIIAQVWHATRHLQASP------------TNVVMMGMGEPLANFDAVVKA 175
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++ D AY L+++ V +ST GI+P I++L + V LAVSLHA N+ LRN+LVPI++K
Sbjct: 176 MAVMQDDLAYMLAKQRVTVSTVGIVPAIERLREVSDVSLAVSLHAPNDALRNELVPINRK 235
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL ELI AC RY+ R +T+EY M+ G+ND+ HA +LI L+ T KINLI
Sbjct: 236 YPLAELIPACRRYVAADKRRKVTWEYIMIAGLNDSIAHAKQLIRLLEG----TPSKINLI 291
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP + S +++ F + L+ SG+ T RK RG +I AACGQL G++
Sbjct: 292 PFNPFPGVDYATSPPEQVEAFRQRLIRSGLIATTRKTRGEEIAAACGQLVGRV 344
>gi|422909265|ref|ZP_16943914.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-09]
gi|424658618|ref|ZP_18095874.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-16]
gi|341635412|gb|EGS60128.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-09]
gi|408054526|gb|EKG89496.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-16]
Length = 373
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 242 NIQAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELMKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|147675306|ref|YP_001216242.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
O395]
gi|227117131|ref|YP_002819027.1| hypothetical protein VC395_0774 [Vibrio cholerae O395]
gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
gi|205829925|sp|A5F3F8.1|RLMN_VIBC3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
Length = 373
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 230/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL L+++ T CKINL
Sbjct: 242 NIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKR----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|77362060|ref|YP_341634.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
haloplanktis TAC125]
gi|123757670|sp|Q3ID16.1|RLMN_PSEHT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|76876971|emb|CAI89188.1| putative pyruvate formate lyase activating enzyme 2; Fe-S cluster
domain [Pseudoalteromonas haloplanktis TAC125]
Length = 376
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 170/355 (47%), Positives = 237/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR+ Q+ KWI+ FGV +F+ M++++ L++KLK I
Sbjct: 8 NLLDLNREGMRELFASFGEKPFRSDQVMKWIYHFGVDNFDDMSNVNKKLKEKLKAECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEISVRQQAKDGTIKYALVLEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN K+ + A
Sbjct: 128 GFNRNLKVSEIIGQVW------RVAKDIGLDGHSEKRPVTNVVMMGMGEPLLNVKNVVPA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L+L D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVP++KK
Sbjct: 182 MELMLDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPVNKK 241
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML+GIND+ A L+ ++ T CK+NL
Sbjct: 242 YPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQAHALVQTLKG----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +GI +R+ RG+DI+AACGQL+G ++
Sbjct: 298 IPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRPRGDDIDAACGQLAGDVV 352
>gi|344338112|ref|ZP_08769045.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
gi|343802166|gb|EGV20107.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
Length = 376
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 218/352 (61%), Gaps = 17/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL LG F + L KWIHK GV D++ MTDLS +LR L+ SV I+
Sbjct: 9 NLLDLDLADCERLVLGLGFKAFHGRSLFKWIHKHGVVDYDAMTDLSRALRDALRESVEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ DQ S DGT KWI ++ IETVFIPE R T+C+S+QVGCA+NC FC+T Q
Sbjct: 69 LPRIIHDQPSADGTVKWIMELEDGQRIETVFIPEGRRTTICVSSQVGCALNCSFCATATQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTVGEI GQ+W Q +N+VMMGMGEPL N+ + + A+
Sbjct: 129 GFNRNLTVGEIAGQIW------------HATRQTGAAPSNVVMMGMGEPLANFDAVVKAM 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++ D AY +++ + LSTSGI+P I +L + V LAVSLHA N+ LR++LVPI++KY
Sbjct: 177 DIMQDDFAYMIAKTRLTLSTSGIVPNIYRLREVSDVSLAVSLHAPNDALRDELVPINRKY 236
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC Y+ R IT+EY ML GIND+ HA ++I L+ K+NLIP
Sbjct: 237 PLAELLPACKAYVGADKRRRITWEYVMLDGINDSLAHAKQMIRLLEG----IPSKVNLIP 292
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP + S RI+ F L +GIF RK RG++I AACGQL G++
Sbjct: 293 FNPFPGNQYGTSPPERIEAFRARLAGAGIFTMTRKTRGDEIAAACGQLVGRV 344
>gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
Length = 373
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 167/357 (46%), Positives = 229/357 (64%), Gaps = 14/357 (3%)
Query: 2 TNLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
TNLLDL Y +EL E FRA Q+ KWI++FG DF++MT+++ LR+KLK
Sbjct: 6 TNLLDLDRKGLRTYFAEELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKLREKLKRVAE 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
I+AP++ Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +
Sbjct: 66 IRAPYVSEAQHSVDGTIKWAMRVGDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQ 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIG 179
QGF RNL V EIIGQ+W R K I I + G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 126 QGFNRNLRVSEIIGQVW------RAAKEIGIEKETGRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ V LA+SLHA + LR++++PI+
Sbjct: 180 ALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHAPTDELRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ + + + RY+ S R +T EY +L +ND HA +L L++ T KI
Sbjct: 240 RFNIATFLESVRRYVEQSNANRGRVTVEYVLLDHVNDDMEHARQLAVLLKD----TPAKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3.1|RLMN_HALHL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/352 (44%), Positives = 222/352 (63%), Gaps = 16/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
LL L + + LGE FRA+Q+ +W+H+ V DF++MTDLS +LR++L+ +
Sbjct: 11 ELLGLDRPRLAAFFDTLGEKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHARVG 70
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +DQ + DGTRKW+ + N +E V+IPE R TLCIS+Q GC + C FC+TG
Sbjct: 71 LPEVAADQQASDGTRKWVVRLADGNCVEAVYIPEPKRGTLCISSQAGCPMGCTFCATGEG 130
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EI+GQ+ V L +G ITNIV MGMGEPLLN+ I A
Sbjct: 131 GFSRNLTAAEIVGQVHVARQHL---------PEGA--ITNIVFMGMGEPLLNFDPVISAS 179
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++ D+ + LS+R V +STSG++ I+++ + V LAVSLHA NN LRN+LVP+++K
Sbjct: 180 RVFTDDYGFVLSKRRVTISTSGVVHAIERMQRVTDVSLAVSLHAPNNELRNQLVPLNRKN 239
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL+ L+ ACH YI P IT+EY ML G+ND D HA EL+ +R K+NLIP
Sbjct: 240 PLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQRLRG----IPSKVNLIP 295
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN +P + + + +++ FA L+ G+ TIR+ RG+DI+ ACGQL G+I
Sbjct: 296 FNPYPGARYGRTPDRQVRRFADRLLEHGLTATIRETRGDDIDGACGQLVGEI 347
>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
Length = 374
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 169/357 (47%), Positives = 229/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +ELGE FRA Q+ KWI+ FG DF KMT+++ LR+KL
Sbjct: 7 NLLDFDRKGMRKF--FQEELGEKAFRADQVMKWIYHFGCDDFEKMTNINKKLREKLIRLA 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPTVSEAQHSSDGTIKWAMRVGDQDVETVYIPDDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ +
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREVGLEKET-----GRRPITNVVMMGMGEPLLNMKNLMP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ E V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGEIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL L++ T KI
Sbjct: 240 RWDIEDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELLKD----TPAKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFMKTLMQYDYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|119471078|ref|ZP_01613637.1| predicted enzyme [Alteromonadales bacterium TW-7]
gi|359447945|ref|ZP_09237503.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20480]
gi|392537187|ref|ZP_10284324.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
marina mano4]
gi|119445918|gb|EAW27199.1| predicted enzyme [Alteromonadales bacterium TW-7]
gi|358046264|dbj|GAA73752.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20480]
Length = 377
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 239/354 (67%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR Q+ KWI+ FGV +F++M++++ L++KLK I
Sbjct: 9 NLLDLNRDAMRELFVSFGEKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKLKAECEIV 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 69 APEISVRQQASDGTIKYALVLEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ ++ + NS+ KR +TN+VMMGMGEPLLN K+ + A+
Sbjct: 129 GFNRNLKVSEIIGQVW----RVAKDIGLDGNSE-KRPVTNVVMMGMGEPLLNVKNVVPAM 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVPI+KKY
Sbjct: 184 ELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPINKKY 243
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++E + AC RYI S + +T EY ML+G+ND+ A EL+ ++ T K+NLI
Sbjct: 244 PIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELVKTLKG----TPSKVNLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + S NSRI F+K+L +GI +R+ RG+DI+AACGQL+G ++
Sbjct: 300 PFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACGQLAGDVV 353
>gi|359437404|ref|ZP_09227469.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20311]
gi|359447503|ref|ZP_09237097.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20439]
gi|358027909|dbj|GAA63718.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20311]
gi|358038601|dbj|GAA73346.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20439]
Length = 376
Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR Q+ KWI+ FGV +F++M++++ L++KLKN I
Sbjct: 8 NLLDLNRDAMRELFVSFGEKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKLKNECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEISVRQQASDGTIKYALVLEGGQEVEAVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ ++ + NS+ KR +TN+VMMGMGEPLLN K+ + A+
Sbjct: 128 GFNRNLKVSEIIGQVW----RVAKDIGLDGNSE-KRPVTNVVMMGMGEPLLNVKNVVPAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVPI+KKY
Sbjct: 183 ELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPINKKY 242
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++E + AC RYI S + +T EY ML+G+ND+ A EL+ ++ T K+NLI
Sbjct: 243 PIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELVKTLKG----TPSKVNLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + S NSRI F+K+L +GI +R+ RG+DI+AACGQL+G ++
Sbjct: 299 PFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACGQLAGDVV 352
>gi|315123120|ref|YP_004065126.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
gi|392555092|ref|ZP_10302229.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
undina NCIMB 2128]
gi|315016880|gb|ADT70217.1| hypothetical protein PSM_B0177 [Pseudoalteromonas sp. SM9913]
Length = 376
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 241/354 (68%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR Q+ KWI+ FGV +F++M++++ L++KLKN I
Sbjct: 8 NLLDLNRDAMRELFVSFGEKPFRGDQVMKWIYHFGVDNFDEMSNVNKKLKEKLKNECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK+R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEISVRQQASDGTIKYALVLEGGQEVEAVWIPEKDRATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ ++ + NS+ KR +TN+VMMGMGEPLLN K+ + A+
Sbjct: 128 GFNRNLKVSEIIGQVW----RVAKDIGLDGNSE-KRPVTNVVMMGMGEPLLNVKNVVPAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVPI+KKY
Sbjct: 183 ELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPINKKY 242
Query: 242 PLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P++E + AC RYI S + +T EY ML+G+ND+ A EL+ ++ T K+NLI
Sbjct: 243 PIEEFLAACRRYIDGSKANKDVTIEYVMLNGVNDSTDQAHELVKTLKG----TPSKVNLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN FP + S NSRI F+K+L +GI +R+ RG+DI+AACGQL+G ++
Sbjct: 299 PFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACGQLAGDVV 352
>gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
Length = 373
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 228/356 (64%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD Y +EL E PFRA Q+ KWI+ FG DF++MT+++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRKYFAEELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+APH+ Q S DGT KW V +ETV+IP+++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPHVSEAQYSTDGTIKWAMRVGDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K + I G+R ITNIVMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLRVSEIIGQVW------RAAKEVGIQKDTGRRPITNIVMMGMGEPLLNMKNLIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L D +GLS+R V +STSG++ ++++ V LA+SLHA + LR++++PI+ +
Sbjct: 181 LEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIDTIDVALAISLHAPTDELRSQIMPINDR 240
Query: 241 YPLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
+ ++ + RY+ T + R +T EY +L +ND HA +L +++ T KIN
Sbjct: 241 WNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKD----TPAKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 297 LIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|15640776|ref|NP_230406.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|360034664|ref|YP_004936427.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|379740604|ref|YP_005332573.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|417812800|ref|ZP_12459457.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|417815665|ref|ZP_12462297.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|418331799|ref|ZP_12942739.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|418336563|ref|ZP_12945461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|418343056|ref|ZP_12949850.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|418348225|ref|ZP_12952959.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|418354747|ref|ZP_12957468.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|419825217|ref|ZP_14348722.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|421316095|ref|ZP_15766666.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|421320395|ref|ZP_15770952.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|421324391|ref|ZP_15774917.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|421328052|ref|ZP_15778566.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|421331070|ref|ZP_15781550.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|421334645|ref|ZP_15785112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|421338538|ref|ZP_15788973.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|421346881|ref|ZP_15797263.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|422890860|ref|ZP_16933268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|422901735|ref|ZP_16937095.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|422905960|ref|ZP_16940802.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|422912555|ref|ZP_16947078.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|422921978|ref|ZP_16955180.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|422925036|ref|ZP_16958065.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|423144356|ref|ZP_17131969.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|423149008|ref|ZP_17136366.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|423152853|ref|ZP_17140050.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|423155662|ref|ZP_17142770.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|423159493|ref|ZP_17146464.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|423164180|ref|ZP_17150965.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|423730312|ref|ZP_17703629.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|423749156|ref|ZP_17711643.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|423892030|ref|ZP_17725716.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|423926805|ref|ZP_17730332.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|424001360|ref|ZP_17744448.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|424005516|ref|ZP_17748499.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|424023527|ref|ZP_17763190.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|424026330|ref|ZP_17765945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|424585655|ref|ZP_18025248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|424594351|ref|ZP_18033688.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|424598216|ref|ZP_18037413.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|424600969|ref|ZP_18040125.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|424605949|ref|ZP_18044913.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|424609782|ref|ZP_18048639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|424612585|ref|ZP_18051391.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|424616406|ref|ZP_18055096.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|424621344|ref|ZP_18059871.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|424644321|ref|ZP_18082074.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|424651965|ref|ZP_18089486.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|424655912|ref|ZP_18093213.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|440709044|ref|ZP_20889702.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443502858|ref|ZP_21069846.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443506771|ref|ZP_21073560.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443510878|ref|ZP_21077541.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443514440|ref|ZP_21080978.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443518253|ref|ZP_21084669.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443523120|ref|ZP_21089359.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443530752|ref|ZP_21096767.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443534509|ref|ZP_21100420.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443538101|ref|ZP_21103956.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|449056719|ref|ZP_21735387.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
gi|81623203|sp|Q9KTX3.1|RLMN_VIBCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|340041391|gb|EGR02357.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|340042104|gb|EGR03069.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|341624720|gb|EGS50204.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|341625937|gb|EGS51358.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|341626532|gb|EGS51905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|341640341|gb|EGS64931.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|341647343|gb|EGS71426.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|341648033|gb|EGS72100.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|356419961|gb|EHH73491.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|356420909|gb|EHH74417.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|356425758|gb|EHH79104.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|356432141|gb|EHH85338.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|356433744|gb|EHH86929.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|356437494|gb|EHH90583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|356442563|gb|EHH95402.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|356446964|gb|EHH99754.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|356449792|gb|EHI02530.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|356453149|gb|EHI05812.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|356456125|gb|EHI08736.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|356645818|gb|AET25873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|378794114|gb|AFC57585.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|395920061|gb|EJH30883.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|395921052|gb|EJH31872.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|395923377|gb|EJH34188.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|395929558|gb|EJH40307.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|395932334|gb|EJH43077.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|395936506|gb|EJH47229.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|395943486|gb|EJH54160.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|395945941|gb|EJH56605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|395961834|gb|EJH72144.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|395963271|gb|EJH73543.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|395965953|gb|EJH76089.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|395974209|gb|EJH83742.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|395977203|gb|EJH86622.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|395978636|gb|EJH88011.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|408009242|gb|EKG47157.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|408016022|gb|EKG53583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|408036554|gb|EKG72979.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|408044443|gb|EKG80361.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|408046037|gb|EKG81758.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|408056511|gb|EKG91389.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|408610754|gb|EKK84119.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|408626825|gb|EKK99659.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|408639974|gb|EKL11776.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|408657806|gb|EKL28882.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|408658862|gb|EKL29920.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|408847951|gb|EKL88007.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|408848879|gb|EKL88915.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|408872904|gb|EKM12112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|408880917|gb|EKM19832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|439975344|gb|ELP51467.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443432755|gb|ELS75277.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443436580|gb|ELS82698.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443440142|gb|ELS89832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443444236|gb|ELS97511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443448074|gb|ELT04710.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443450848|gb|ELT11113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443457835|gb|ELT25231.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443462293|gb|ELT33333.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443465690|gb|ELT40349.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|448263887|gb|EMB01127.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
Length = 373
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL L++ T CKINL
Sbjct: 242 NIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080936|ref|YP_002809487.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
M66-2]
gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|384423989|ref|YP_005633347.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|417820180|ref|ZP_12466794.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|417823870|ref|ZP_12470461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|419829369|ref|ZP_14352855.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|419832339|ref|ZP_14355801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|419835669|ref|ZP_14359113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|421342513|ref|ZP_15792919.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|421350580|ref|ZP_15800945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|421353555|ref|ZP_15803887.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|422306247|ref|ZP_16393429.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|422916540|ref|ZP_16950876.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|423734032|ref|ZP_17707246.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|423818058|ref|ZP_17715479.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|423850017|ref|ZP_17719268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|423879140|ref|ZP_17722873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|423950223|ref|ZP_17733663.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|423977919|ref|ZP_17737211.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|423996962|ref|ZP_17740223.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|424008316|ref|ZP_17751265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|424015666|ref|ZP_17755511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|424018605|ref|ZP_17758403.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|424589995|ref|ZP_18029441.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|424624146|ref|ZP_18062621.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|424628642|ref|ZP_18066945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|424632676|ref|ZP_18070790.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|424635765|ref|ZP_18073784.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|424639680|ref|ZP_18077574.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|424647742|ref|ZP_18085416.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|429884994|ref|ZP_19366599.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443526528|ref|ZP_21092607.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
gi|254807221|sp|C3LT10.1|RLMN_VIBCM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|340037811|gb|EGQ98785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|340047555|gb|EGR08478.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|341640017|gb|EGS64620.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|395945264|gb|EJH55934.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|395951025|gb|EJH61639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|395952680|gb|EJH63293.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|408015207|gb|EKG52801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|408020588|gb|EKG57884.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|408026436|gb|EKG63443.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|408026850|gb|EKG63844.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|408035820|gb|EKG72275.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|408036323|gb|EKG72761.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|408058508|gb|EKG93304.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|408620954|gb|EKK93957.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|408626931|gb|EKK99760.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|408631478|gb|EKL04018.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|408636371|gb|EKL08519.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|408643360|gb|EKL15085.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|408644484|gb|EKL16168.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|408650983|gb|EKL22239.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|408661139|gb|EKL32132.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|408665931|gb|EKL36737.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|408854015|gb|EKL93785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|408858423|gb|EKL98097.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|408861652|gb|EKM01225.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|408865756|gb|EKM05148.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|408869611|gb|EKM08905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|429228326|gb|EKY34254.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443455091|gb|ELT18879.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
Length = 373
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL L++ T CKINL
Sbjct: 242 NIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|336124879|ref|YP_004566927.1| Radical SAM family enzyme [Vibrio anguillarum 775]
gi|335342602|gb|AEH33885.1| Radical SAM family enzyme [Vibrio anguillarum 775]
Length = 386
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/355 (46%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +EL E FRA Q+ KWI+ FG DF +MT+++ LR++L+ I
Sbjct: 20 NLLDFDRQGLRKFFAEELSEKAFRADQVMKWIYHFGCDDFEQMTNINKKLREQLQQRCEI 79
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP + Q S DGT KW V +ETV+IPE++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 80 RAPIVSQAQHSSDGTIKWAMRVGDQDVETVYIPEEDRATLCVSSQVGCALECKFCSTAQQ 139
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 140 GFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 194
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 195 EIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPINDRW 254
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+++ + + RYI S R +T EY +L +ND HA EL LM+ T CKINL
Sbjct: 255 DIQDFLASVRRYIATSNANRGKVTVEYVLLDHVNDDMDHAHELAKLMKG----TPCKINL 310
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 311 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 365
>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
Length = 377
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 229/355 (64%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 11 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 70
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 71 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 130
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 131 GFNRNLRVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 185
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 186 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 245
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL L++ T CKINL
Sbjct: 246 NIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKG----TPCKINL 301
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 302 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 356
>gi|345872018|ref|ZP_08823958.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
gi|343919552|gb|EGV30298.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
Length = 365
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/357 (46%), Positives = 224/357 (62%), Gaps = 25/357 (7%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLDL +LG F + L KWIHK GV+D++ MTD+ LR+ L+ +V I
Sbjct: 8 TNLLDLDLADCEALVVDLGFKAFHGRNLFKWIHKHGVTDYDAMTDVPKRLREALRGTVDI 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P I++D S DGT KW+ + IETVFIPE R+T+C+S+QVGCA+ C FC+T R
Sbjct: 68 YLPRIIADHPSEDGTTKWVMELADGQRIETVFIPEGKRSTICVSSQVGCALECAFCATAR 127
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI----TNIVMMGMGEPLLNYKS 176
QGF RNL+V EI+GQ+W RQ+ TN+VMMGMGEPL N+++
Sbjct: 128 QGFNRNLSVAEIVGQVW----------------HAARQLGTAPTNVVMMGMGEPLANFEA 171
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ A+ ++ D AY L+++ V LSTSGI+P I +L + V LAVSLHA N+ LR++LVP
Sbjct: 172 AVKAMDIMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSLAVSLHAPNDELRDQLVP 231
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
I++KYPL ELI AC YI R +T+EY ML G+ND+ HA +LI L+ K
Sbjct: 232 INRKYPLSELIPACKAYIANDKRRKVTWEYVMLDGVNDSIAHAKQLIRLLEG----VPSK 287
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN F ++ S RI+ F L +GIF RK RG++I+AACGQL G++
Sbjct: 288 LNLIPFNPFAGNDFGTSTPERIEAFRVRLTRAGIFAMTRKTRGDEISAACGQLVGRV 344
>gi|54307955|ref|YP_128975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
profundum SS9]
gi|81615490|sp|Q6LU52.1|RLMN_PHOPR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9]
Length = 373
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/356 (46%), Positives = 229/356 (64%), Gaps = 12/356 (3%)
Query: 2 TNLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
TNLLDL Y +EL E FRA Q+ KWI++FG DF++MT+++ LR+KLK
Sbjct: 6 TNLLDLDRKGLRTYFAEELNEKAFRADQIMKWIYQFGCDDFDQMTNINKKLREKLKRVAE 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
I+AP++ Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +
Sbjct: 66 IRAPYVSQAQHSVDGTIKWAMRVGDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQ 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL V EIIGQ+W ++ EK+ G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 126 QGFNRNLRVSEIIGQVWRAAKEIGIEKDT-----GRRPITNVVMMGMGEPLLNMKNLIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L D +GLS+R V +STSG++ +D++ V LA+SLHA + LR++++PI+ +
Sbjct: 181 LEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNIDVALAISLHAPTDELRSQIMPINDR 240
Query: 241 YPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
+ + + + RYI S R +T EY +L +ND HA +L L++ T KIN
Sbjct: 241 FNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEHARQLAVLLKD----TPAKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 297 LIPFNPYPGSPYRKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|437838913|ref|ZP_20846081.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
gi|435298122|gb|ELO74366.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
Length = 347
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/335 (47%), Positives = 224/335 (66%), Gaps = 13/335 (3%)
Query: 23 PFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFH 82
PFRA Q+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW
Sbjct: 2 PFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIA 61
Query: 83 VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W
Sbjct: 62 VGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW----- 116
Query: 143 LRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
R K + G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LST
Sbjct: 117 -RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLST 175
Query: 202 SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261
SG++P +DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S +
Sbjct: 176 SGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQ 235
Query: 262 --ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319
+T EY ML +ND HA +L L+++ T CKINLIP+N FP + S NSRI
Sbjct: 236 GRVTIEYVMLDHVNDGTEHAHQLAELLKE----TPCKINLIPWNPFPGAPYGRSSNSRID 291
Query: 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 292 RFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 326
>gi|365540822|ref|ZP_09365997.1| ribosomal RNA large subunit methyltransferase N [Vibrio ordalii
ATCC 33509]
Length = 373
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 230/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSPL---KFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA Q+ KWI+ FG DF +MT+++ LR++L+
Sbjct: 7 NLLDFDRQGLRKF--FAEELSEKAFRADQVMKWIYHFGCDDFEQMTNINKKLREQLQQRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP + Q S DGT KW V +ETV+IPE+ R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIRAPIVSQAQHSSDGTIKWAMRVGDQDVETVYIPEEERATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EIIGQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIIGQVWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL+++L D +GLS+R V +STSG++ +D++ + V LA+SLHA N+ LR++++PI+
Sbjct: 180 ALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQIDVALAISLHAPNDKLRSEIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIATSNANRGKVTVEYVLLDHVNDDMEHAHELAKLMKG----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|359456413|ref|ZP_09245574.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20495]
gi|358046528|dbj|GAA81823.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20495]
Length = 376
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR+ Q+ KWI+ FGV +F++MT+++ L++KLK I
Sbjct: 8 NLLDLNRDAMRELFASFGEKPFRSDQVMKWIYHFGVDNFDEMTNVNKKLKEKLKAECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEITVRQQASDGTIKYALILEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN K+ + A
Sbjct: 128 GFNRNLKVSEIIGQVW------RVAKDIGLDGHSEKRPVTNVVMMGMGEPLLNLKNVVPA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVP++KK
Sbjct: 182 MELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPVNKK 241
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML+GIND+ A L+ ++ T K+NL
Sbjct: 242 YPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQAHALVQTLKG----TPSKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 298 IPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDIDAACGQLVGDVV 352
>gi|332534669|ref|ZP_08410500.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035881|gb|EGI72363.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
haloplanktis ANT/505]
Length = 376
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR+ Q+ KWI+ FGV +F++MT+++ L++KLK I
Sbjct: 8 NLLDLNRDAMRELFASFGEKPFRSDQVMKWIYHFGVDNFDEMTNVNKKLKEKLKAECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEITVRQQASDGTIKYALILEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN K+ + A
Sbjct: 128 GFNRNLKVSEIIGQVW------RVAKDIGLDGHSEKRPVTNVVMMGMGEPLLNLKNVVPA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVP++KK
Sbjct: 182 MELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPVNKK 241
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML+GIND+ A L+ ++ T K+NL
Sbjct: 242 YPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQAHALVQTLKG----TPSKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 298 IPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDIDAACGQLVGDVV 352
>gi|359441757|ref|ZP_09231643.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20429]
gi|392535664|ref|ZP_10282801.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
arctica A 37-1-2]
gi|358036259|dbj|GAA67892.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20429]
Length = 376
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR+ Q+ KWI+ FGV +F+ M++++ L++KLK I
Sbjct: 8 NLLDLNREAMRELFASFGEKPFRSDQVMKWIYHFGVDNFDDMSNVNKKLKEKLKAECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEITVRQQASDGTIKYALILEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN K+ + A
Sbjct: 128 GFNRNLKVSEIIGQVW------RVAKDIGLDGHSEKRPVTNVVMMGMGEPLLNLKNVVPA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVP++KK
Sbjct: 182 MELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPVNKK 241
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + +C RYI S + +T EY ML+GIND+ A L+ ++ T CK+NL
Sbjct: 242 YPIEEFLASCRRYIDGSKANKDVTVEYVMLNGINDSTDQAHALVQTLKG----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 298 IPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDIDAACGQLVGDVV 352
>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 373
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 230/356 (64%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD Y +EL E PFRA Q+ KWI+ FG DF++MT+++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRKYFAEELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IP+++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K I + + G+R ITN+VMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLRVSEIIGQVW------RAAKEIGVQKETGRRPITNVVMMGMGEPLLNMKNLIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L D +GLS+R V +STSG++ ++++ V LA+SLHA + LR++++PI+ +
Sbjct: 181 LEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINNR 240
Query: 241 YPLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
+ ++ + A RY+ T + R +T EY +L +ND HA +L +++ T KIN
Sbjct: 241 WDIETFLDAVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKD----TPAKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 297 LIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|414071210|ref|ZP_11407183.1| 23S rRNA (adenine-C2)-methyltransferase [Pseudoalteromonas sp.
Bsw20308]
gi|410806388|gb|EKS12381.1| 23S rRNA (adenine-C2)-methyltransferase [Pseudoalteromonas sp.
Bsw20308]
Length = 376
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR+ Q+ KWI+ FGV +F++MT+++ L++KLK I
Sbjct: 8 NLLDLNRDAMRELFASFGEKPFRSDQVMKWIYHFGVDNFDEMTNVNKKLKEKLKAECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEITVRQQASDGTIKYALILEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN K+ + A
Sbjct: 128 GFNRNLKVSEIIGQVW------RVAKDIGLDGHSEKRPVTNVVMMGMGEPLLNLKNVVPA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVP++KK
Sbjct: 182 MELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPVNKK 241
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML+GIND+ A L+ ++ T K+NL
Sbjct: 242 YPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQAHALVQTLKG----TPSKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +G+ +R+ RG+DI+AACGQL G ++
Sbjct: 298 IPFNPFPGNEYTRSSNSRIDRFSKVLQAAGVTCIVRRTRGDDIDAACGQLVGDVV 352
>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
Length = 365
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 219/356 (61%), Gaps = 25/356 (7%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
N LDL + LG F + L KW+HK GV DF+ MTDL SLR L +V I+
Sbjct: 9 NPLDLDLAGCESLVTALGFKAFHGRNLFKWMHKHGVVDFDAMTDLPKSLRTVLLETVEIR 68
Query: 63 APHIMSDQISFDGTRKWIFH-VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ S DGT KW+ V +ETVFIPE R+T+C+S+QVGCA+ C FC+T RQ
Sbjct: 69 LPRILQTHPSADGTVKWVMELVDGQRVETVFIPEGKRSTICVSSQVGCALECAFCATARQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI----TNIVMMGMGEPLLNYKST 177
GF RNL+V EIIGQ+W RQ+ TN+VMMGMGEPL N+++
Sbjct: 129 GFNRNLSVAEIIGQVW----------------HAARQLGAAPTNVVMMGMGEPLANFEAA 172
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A+ ++ D AY L+++ V LSTSGI+P I +L + V LAVSLHA N+ LR++LVPI
Sbjct: 173 VKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSLAVSLHAPNDELRDELVPI 232
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++KYPL ELI AC Y+ R IT+EY ML GIND+ HA +LI L+ K+
Sbjct: 233 NRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHAKQLIRLLEG----VPSKV 288
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN F S+ S R++ F + L SGIF RK RG++I AACGQL G++
Sbjct: 289 NLIPFNPFTGSDFGTSPPDRVETFRERLARSGIFAMTRKTRGDEIAAACGQLVGRV 344
>gi|359433547|ref|ZP_09223874.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20652]
gi|357919803|dbj|GAA60123.1| 23S rRNA (adenine2503-C2)-methyltransferase [Pseudoalteromonas sp.
BSi20652]
Length = 376
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 235/355 (66%), Gaps = 13/355 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ GE PFR+ Q+ KWI+ FGV +F+ M++++ L++KLK I
Sbjct: 8 NLLDLNREAMRELFASFGEKPFRSDQVMKWIYHFGVDNFDDMSNVNKKLKEKLKAECEIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q + DGT K+ ++ +E V+IPEK R TLC+S+QVGCA+ C FCST +Q
Sbjct: 68 APEITVRQQASDGTIKYALILEGGQEVEAVWIPEKERATLCVSSQVGCALECTFCSTAQQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-KRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K+I ++ KR +TN+VMMGMGEPLLN K+ + A
Sbjct: 128 GFNRNLKVSEIIGQVW------RVAKDIGLDGHSEKRPVTNVVMMGMGEPLLNLKNVVPA 181
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++L++ D +GLS+R V LSTSG++P +D L ++ V LA+SLHA +N LR+ LVP++KK
Sbjct: 182 MELMMDDWGFGLSKRRVTLSTSGVVPALDLLKEKIDVALAISLHAPDNALRDILVPVNKK 241
Query: 241 YPLKELILACHRYITYSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YP++E + AC RYI S + +T EY ML+GIND+ A L+ ++ T K+NL
Sbjct: 242 YPIEEFLAACRRYIDGSKANKDVTVEYVMLNGINDSTDQAHALVQTLKG----TPSKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + S NSRI F+K+L +GI +R+ RG+DI+AACGQL G ++
Sbjct: 298 IPFNPFPGNEYTRSSNSRIDRFSKVLQAAGITCIVRRTRGDDIDAACGQLVGDVV 352
>gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Photobacterium angustum S14]
gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Photobacterium angustum S14]
Length = 373
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 229/356 (64%), Gaps = 14/356 (3%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD Y +EL E PFRA Q+ KWI+ FG DF++MT+++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRKYFAEELNEKPFRADQIMKWIYHFGCDDFDQMTNINKKLREKLKRVAEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IP+++R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSTDGTIKWAMRVGDQDVETVYIPDEDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL V EIIGQ+W R K I + + G+R ITNIVMMGMGEPLLN K+ I A
Sbjct: 127 GFNRNLRVSEIIGQVW------RAAKEIGVQKETGRRPITNIVMMGMGEPLLNMKNLIPA 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L D +GLS+R V +STSG++ ++++ V LA+SLHA + LR++++PI+ +
Sbjct: 181 LEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPINDR 240
Query: 241 YPLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
+ ++ + RY+ T + R +T EY +L +ND HA +L +++ T KIN
Sbjct: 241 WNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLAKVLKD----TPAKIN 296
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
LIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 297 LIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|407893166|ref|ZP_11152196.1| hypothetical protein Dmas2_03745 [Diplorickettsia massiliensis 20B]
Length = 315
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 159/311 (51%), Positives = 218/311 (70%), Gaps = 10/311 (3%)
Query: 44 MTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLC 102
MT+LS++LR++L+ I P I+ DQ S DGTRKW+ ++ N +ETVFIPE+NR TLC
Sbjct: 1 MTNLSLALREQLQQVACITFPEIVFDQQSADGTRKWLLRLEDGNCVETVFIPERNRGTLC 60
Query: 103 ISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNI 162
+S+QVGCA+NC FCSTG+QGF RNL + EII Q+W+ + K+I+ S ++TN+
Sbjct: 61 VSSQVGCALNCSFCSTGKQGFSRNLRIDEIIAQVWIAVHFV--SKHIEFFSS---RVTNV 115
Query: 163 VMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVS 222
VMMGMGEPLLN+++ + A+ L++ D AYG S+R V LSTSGI+PM+ KL+Q V LA+S
Sbjct: 116 VMMGMGEPLLNFEAVVPAMNLMMDDFAYGFSKRRVTLSTSGIVPMLKKLSQVSDVALAIS 175
Query: 223 LHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIEL 282
LHA N+ LRN+LVPI+KKYPL+EL+ AC Y + R IT EY +L GIND HA +L
Sbjct: 176 LHAPNDELRNELVPINKKYPLRELLEACRHYFSQDSRRRITMEYVLLDGINDQLHHAQQL 235
Query: 283 ISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDI 342
I +++ S K+NLIPFN FP + S +I+ F L+ +G+ +RK RG DI
Sbjct: 236 IQILQG----ISVKVNLIPFNPFPRTTYRRSPQHQIERFRDYLLKAGLNTIVRKTRGQDI 291
Query: 343 NAACGQLSGKI 353
+AACGQL G++
Sbjct: 292 DAACGQLVGRV 302
>gi|344199654|ref|YP_004783980.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
ferrivorans SS3]
gi|343775098|gb|AEM47654.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
ferrivorans SS3]
Length = 363
Score = 323 bits (827), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 162/352 (46%), Positives = 220/352 (62%), Gaps = 17/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL L + GE PFRA Q+ +W+H V+DF M+++S +LR +L +
Sbjct: 15 HLLGLDRQSLAGLLRTWGESPFRANQILQWLHTRQVTDFAAMSNISKTLRTRLAAETILD 74
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++DQ++ DGTRKW+ + N IETVFIPE++R TLCIS+QVGC++ C FC+TG Q
Sbjct: 75 EPEIIADQLAADGTRKWLLGLPDGNAIETVFIPEEDRGTLCISSQVGCSLACSFCATGAQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
G RNL EII Q+ V L G ITN+V MGMGEPLLN + + AL
Sbjct: 135 GLSRNLETHEIIAQVRVARRLL-----------GLNAITNVVFMGMGEPLLNLRHVLPAL 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D+AYGL R + +ST+G++P +D+L E PV LA+SLHAS +++R+ LVP+++ Y
Sbjct: 184 DLLRDDYAYGLGARRITVSTAGVVPGMDRLGTESPVNLAISLHASRDDIRDILVPVNRHY 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC RY R ITFEY ML G+ND D HA EL+ L+R +NLIP
Sbjct: 244 PLAELLAACRRYPLPP-RRRITFEYVMLDGLNDADTHARELLRLLRD----IPAMVNLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP SN S RI F I++ + R+ RG+DI AACGQL+G++
Sbjct: 299 FNPFPGSNYKRSPQLRIDAFRDIILRGDVMTVTRRPRGDDIAAACGQLAGQV 350
>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091617|sp|Q8K9P5.1|RLMN_BUCAP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 363
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/354 (47%), Positives = 231/354 (65%), Gaps = 13/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + LG F QL KWI+ ++FN M++L +RKKL YI
Sbjct: 16 NLLDLNRKEIEIFLLSLGAKKFVTDQLMKWIYNRHCNNFNLMSNLKKDIRKKLNERSYIF 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
A + + ++IS+DGT KWI + K IET++IPEK R TLC+S+Q+GC++ C FC+TG+QG
Sbjct: 76 ASNFIEEKISYDGTVKWITSIDKQKIETIYIPEKKRATLCVSSQIGCSLKCKFCATGQQG 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EII Q+W L+ +KN ITNIV MGMGEPLLN + I A+K
Sbjct: 136 FNRNLKVSEIISQIWQANKILKEKKN-------NSTITNIVFMGMGEPLLNLNNVISAIK 188
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+IL + +GLS+R + LSTSGI+P ++KL ++ V LA+SLHA N+ +RN ++PI+ KY
Sbjct: 189 IILDKNGFGLSKRRITLSTSGIVPALNKLIKKIDVSLAISLHAPNDFIRNSIMPINMKYN 248
Query: 243 LKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+K + + +Y+ +S R +T EY ML GIND + HA EL ++++K KINLI
Sbjct: 249 IKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEELGNILKK----IPSKINLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N F N+N ICS +RI IFA IL G TIRK RG DI AACGQL+G I+
Sbjct: 305 PWNFFKNANFICSSKNRINIFANILRKKGFNTTIRKNRGQDIGAACGQLTGDIV 358
>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
Length = 380
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/357 (46%), Positives = 230/357 (64%), Gaps = 16/357 (4%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA+Q+ KWI+ FGV DF +M +++ LR+KL +
Sbjct: 7 NLLDFDRKGLRKF--FTEELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLLHRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIVAPIVSEAQHSADGTIKWAMSVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EI+GQ+W ++ EK+ G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIVGQIWRAAREIGLEKDT-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
+L+L+L D + LS+R V +STSG++ +D++ V LA+SLHA N+ LR++++PI+
Sbjct: 180 SLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM++ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKE----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|407071964|ref|ZP_11102802.1| ribosomal RNA large subunit methyltransferase N [Vibrio
cyclitrophicus ZF14]
Length = 380
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/357 (46%), Positives = 228/357 (63%), Gaps = 16/357 (4%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA+Q+ KWI+ FGV DF +M +++ LR+KL+
Sbjct: 7 NLLDFDRKGLRKF--FTEELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLQRRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIVAPVVSEAQHSTDGTIKWAMSVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EI+GQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIVGQIWRASREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
+L+++L D + LS+R V +STSG++ +D++ V LA+SLHA N+ LR++++PI+
Sbjct: 180 SLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|71892305|ref|YP_278039.1| pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123761466|sp|Q492D9.1|RLMN_BLOPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 373
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 232/355 (65%), Gaps = 7/355 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+++ + + + +LGE PFR+ Q+ +WI+ + DFN MT++S SL+++LK I
Sbjct: 14 VNLLNMNKEELLIFFDKLGEKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKERLKQIAEI 73
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP I+ +Q+S DGT KW + + IETV+IPE R TLC+S+Q+GC + C FC T +Q
Sbjct: 74 RAPIIIKEQLSSDGTIKWAMKIDEQQIETVYIPENKRTTLCVSSQIGCPLGCSFCGTAQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W + K IKI + + ITNIV MGMGEPLLN + + A+
Sbjct: 134 GFNRNLNVSEIIGQVWRAAQLINLNKKIKIKN-NRFPITNIVFMGMGEPLLNIVNVVSAI 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++IL D + LS+RH+ LST+GI+P I+KL + LA+SLHA N+ +RNK++PI+KKY
Sbjct: 193 RIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAISLHAPNDIIRNKIMPINKKY 252
Query: 242 PLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ ++ A RY T S IT EY +L IND +HA +L ++ CKINL
Sbjct: 253 NINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAHQLAKQLQG----IPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N PN CS R++ F K+L+ I IRKIRG DINAACGQL+G+++
Sbjct: 309 IPWNPIPNIRYACSSQIRMRAFLKVLLKYNIVTIIRKIRGADINAACGQLTGEVI 363
>gi|392950836|ref|ZP_10316391.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
gi|391859798|gb|EIT70326.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
Length = 441
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 226/397 (56%), Gaps = 56/397 (14%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL L + ++GE P+RA Q+ +WI++ GV F+ M+++S LR +++ I+
Sbjct: 31 NLFGLDREQLRAVFADMGEKPYRADQIMQWIYRRGVDSFDAMSNVSKDLRTRMQERFEIR 90
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN------------------------ 97
P ++++Q+S DGTRKW+ + N IETVFIPE +
Sbjct: 91 HPELLAEQLSQDGTRKWVLKLDGGNAIETVFIPEGDFESRLERVAPQRFKPSVSDESDAS 150
Query: 98 --------------------RNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 137
R TLCIS+QVGCA++C FCST +QG RNLT E+I Q+W
Sbjct: 151 SAAESGTTRSAVSDKSDKRYRGTLCISSQVGCAMDCSFCSTAQQGLNRNLTTAEVIAQVW 210
Query: 138 VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHV 197
K + + Q +R I+N+V MGMGEPL NY + A+ ++ D +GLS+R V
Sbjct: 211 FAA------KTLGGDFQNERVISNVVFMGMGEPLANYGQVMPAIGILQDDFGFGLSKRRV 264
Query: 198 ILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257
+STSG++P +D+L +C LAVSLHA N+ LRN+LVPI++KYP+ EL+ AC RY
Sbjct: 265 TVSTSGLVPFMDRLRADCDTALAVSLHAPNDELRNRLVPINRKYPIAELMAACRRYTAGK 324
Query: 258 PRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNS 316
R M I +EY ML G+ND HA +L L+ K+NLIPFN FP + SK
Sbjct: 325 ERKMHIVYEYVMLDGVNDAPEHARQLAKLL----AGMPAKVNLIPFNPFPEAQYKRSKPE 380
Query: 317 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IK FA IL I T R+ RG+DI+AACGQL G++
Sbjct: 381 AIKRFADILREKHIMTTTRRTRGDDIDAACGQLVGRV 417
>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218708638|ref|YP_002416259.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
LGP32]
gi|254807223|sp|B7VJT5.1|RLMN_VIBSL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
Length = 380
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 166/357 (46%), Positives = 228/357 (63%), Gaps = 16/357 (4%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA+Q+ KWI+ FGV DF +M +++ LR+KL +
Sbjct: 7 NLLDFDRKGLRKF--FTEELNEKAFRAEQVMKWIYHFGVDDFEQMNNINKKLREKLLHRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIVAPIVSEAQHSADGTIKWAMSVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EI+GQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I
Sbjct: 125 QQGFNRNLKVSEIVGQIWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
+L+L+L D + LS+R V +STSG++ +D++ V LA+SLHA N+ LR++++PI+
Sbjct: 180 SLELMLDDLGFSLSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDALRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYNYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|197336065|ref|YP_002155383.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
MJ11]
gi|254807222|sp|B5FAW9.1|RLMN_VIBFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
Length = 372
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 158/342 (46%), Positives = 222/342 (64%), Gaps = 11/342 (3%)
Query: 15 YCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFD 74
+ +ELGE FRA Q+ KW++ FG DF++M +++ LR+KLKN I+AP++ Q S D
Sbjct: 20 FSEELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLKNKCEIRAPYVSEAQHSSD 79
Query: 75 GTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIG 134
GT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +QGF RNL V EI+G
Sbjct: 80 GTIKWAMKVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQGFNRNLKVSEIVG 139
Query: 135 QLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSR 194
Q+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL+++L D + LS+
Sbjct: 140 QIWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPALEIMLDDLGFALSK 194
Query: 195 RHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254
R V +STSG++ +D++ + V LA+SLHA + LR++++PI+ ++ + + + RYI
Sbjct: 195 RRVTVSTSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRWDIDAFLASVRRYI 254
Query: 255 TYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
S R +T EY +L +ND HA +L L++ T KINLIPFN +P S
Sbjct: 255 ASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKD----TPAKINLIPFNPYPGSPYKK 310
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 311 PSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|219682208|ref|YP_002468592.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|384226090|ref|YP_005617253.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|384226611|ref|YP_005618362.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
gi|384227147|ref|YP_005618897.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|414562644|ref|YP_005617835.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|219621941|gb|ACL30097.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311086023|gb|ADP66105.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086597|gb|ADP66678.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087180|gb|ADP67260.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087708|gb|ADP67787.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 363
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 228/353 (64%), Gaps = 13/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + LG F +Q+ WI+ + DFNKM ++S+ RKKL YI
Sbjct: 16 NLLDLNRQNLKYFLISLGAKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKKLYEKSYIF 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
A + ++IS+DGT KWI + IETV++PEK R+TLC+S+Q+GC++ C FC+TG++G
Sbjct: 76 ASEFIEEKISYDGTIKWITDINNQKIETVYMPEKKRSTLCVSSQIGCSLKCHFCATGQEG 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EII Q+W +L +EKNI K+ ITNIV MGMGEPLLN K+ + AL
Sbjct: 136 FQRNLKVSEIIAQIWQANKRL-KEKNI------KKNITNIVFMGMGEPLLNLKNVVSALT 188
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+IL ++ +GLS+R V LSTSGI+P +DKL V LA+SLHA N+ +RN ++PI++KY
Sbjct: 189 IILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISLHAPNDFIRNIIMPINRKYN 248
Query: 243 LKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ ++ + +Y YS R IT EY ML IND++ HA +L L+ K KINLI
Sbjct: 249 ISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNEHARQLSVLLSK----IPSKINLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
P+N F + +CS RI +FA IL G TIRK RG DINAACGQL+G I
Sbjct: 305 PWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAACGQLTGII 357
>gi|389752493|ref|ZP_10191172.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 115]
gi|388432960|gb|EIL89942.1| 2-vinyl bacteriochlorophyllide hydratase [Rhodanobacter sp. 115]
Length = 640
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 209/309 (67%), Gaps = 10/309 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD ++ ++GE P+RA+Q+ KWI+ DF KMTD+ +LR KL+ S Y+
Sbjct: 20 NLLDFDREGLRDFFTQIGEKPYRAEQVMKWIYHHLEDDFEKMTDVGKALRAKLEASCYVG 79
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + ++++ DGT KW+ + + N +E V+IPE R TLC+S+Q+GCA+ C FCSTG Q
Sbjct: 80 PPKTLLEKVATDGTHKWLLGMDRGNAVEAVYIPEPTRGTLCVSSQIGCALACTFCSTGTQ 139
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL E+IGQ+WV +L NI + R+ITN+VMMGMGEPLLN+ + A+
Sbjct: 140 GFNRNLAPSEVIGQMWVAAKQL---GNI---THQNRRITNVVMMGMGEPLLNFDNVTTAM 193
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D +GL+ + V LST+G++PMIDKL++ V LAVSLHA+N+ LR +LVP++K+Y
Sbjct: 194 SLMRDDLGFGLASKRVTLSTAGLVPMIDKLSETIDVSLAVSLHAANDELRTELVPLNKRY 253
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL AC R++ PR ITFEY ++ GIND HA +LI MRK L +CK+NLIP
Sbjct: 254 PLAELTAACQRWVARKPRTSITFEYTLMKGINDQPEHARQLIKFMRK---LPTCKVNLIP 310
Query: 302 FNCFPNSNL 310
FN FP + L
Sbjct: 311 FNPFPGTRL 319
>gi|390951014|ref|YP_006414773.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
gi|390427583|gb|AFL74648.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
Length = 365
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 221/352 (62%), Gaps = 17/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+L+ LG F + L KW+HK GV +F+ MTDLS SLR+ L+ +V I+
Sbjct: 9 NLLNLNLADCEALVVGLGVKAFHGRNLFKWVHKHGVVEFDAMTDLSRSLRETLRETVEIR 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ S DGT KWI + IETVFIPE R+T+C+S+QVGCA+ C FC+T RQ
Sbjct: 69 LPRIVEAHPSEDGTIKWIMELHDGQRIETVFIPEGRRSTICVSSQVGCALECAFCATARQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W +L + TN+VMMGMGEPL N++S + A+
Sbjct: 129 GFNRNLAVSEIIGQVWHAARQLDKPP------------TNVVMMGMGEPLANFESVVKAM 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++ D AY L+++ V LSTSGI+P I +L + V LAVSLHA N+ LR++LVPI++KY
Sbjct: 177 DIMQDDLAYMLAKQRVTLSTSGIVPNIYRLREVSDVSLAVSLHAPNDALRDQLVPINRKY 236
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC YI R +T+EY ML GIND+ HA +LI L+ K+NLIP
Sbjct: 237 PLAELLPACKAYIGQDKRRKVTWEYVMLDGINDSLAHAKQLIRLLEG----IPSKLNLIP 292
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN F S+ S RI+ F L +GIF RK RG++I AACGQL G++
Sbjct: 293 FNPFAGSDFGTSPPERIEAFRLRLTRAGIFAMTRKTRGDEIAAACGQLVGRV 344
>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 372
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 232/358 (64%), Gaps = 18/358 (5%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA Q+ KWI+ FG DF++MT+++ LR+KLK
Sbjct: 7 NLLDFDRKGMRKF--FAEELEEKAFRADQIMKWIYHFGCDDFDQMTNINKKLREKLKVIA 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
IKAP + + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIKAPTVSAAQYSKDGTIKWAMRVGDQDVETVYIPDDDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPLLNYKSTI 178
+QGF RNL V EIIGQ+W R K I + + G+R ITN+VMMGMGEPLLN K+ +
Sbjct: 125 QQGFNRNLCVSEIIGQVW------RAAKEIGVQKETGRRPITNVVMMGMGEPLLNMKNLL 178
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
AL+++L D +GLS+R V +STSG++ ++++ V LA+SLHA + LR++++PI+
Sbjct: 179 PALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNIDVALAISLHAPTDELRSQIMPIN 238
Query: 239 KKYPLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++ ++E + A RY+ T + R +T EY +L IND HA +L +++ T K
Sbjct: 239 NRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLAKVLKD----TPAK 294
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
INLIPFN +P S NSRI F K LM I VT+RK RG+DI+AACGQL G ++
Sbjct: 295 INLIPFNPYPGSPYNKPSNSRIDRFMKTLMEYDITVTVRKTRGDDIDAACGQLVGDVI 352
>gi|417950305|ref|ZP_12593429.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
ATCC 33789]
gi|342806784|gb|EGU41996.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
ATCC 33789]
Length = 380
Score = 320 bits (819), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 226/357 (63%), Gaps = 16/357 (4%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA Q+ KW++ FGV DF M +++ LR+KL+
Sbjct: 7 NLLDFDRKGLRKF--FTEELNEKAFRADQVMKWMYHFGVDDFENMNNINKKLREKLQRRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIVAPVVSEAQHSSDGTIKWAMSVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EI+GQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ +
Sbjct: 125 QQGFNRNLKVSEIVGQIWRASREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLMP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
+L+++L D + LS+R V +STSG++ +D++ V LA+SLHA N+ LR++++PI+
Sbjct: 180 SLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDELRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
Length = 380
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 226/357 (63%), Gaps = 16/357 (4%)
Query: 3 NLLDLSP---LKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV 59
NLLD KF + +EL E FRA Q+ KW++ FGV DF M +++ LR+KL+
Sbjct: 7 NLLDFDRKGLRKF--FTEELNEKAFRADQVMKWMYHFGVDDFENMNNINKKLREKLQRRC 64
Query: 60 YIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP + Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST
Sbjct: 65 EIVAPVVSEAQHSSDGTIKWAMSVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTA 124
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL V EI+GQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ +
Sbjct: 125 QQGFNRNLKVSEIVGQIWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLMP 179
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
+L+++L D + LS+R V +STSG++ +D++ V LA+SLHA N+ LR++++PI+
Sbjct: 180 SLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNIDVALAISLHAPNDELRSQIMPIND 239
Query: 240 KYPLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
++ +++ + + RYI S R +T EY +L +ND HA EL LM+ T CKI
Sbjct: 240 RWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELAELMKD----TPCKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+RK RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFQKTLMEYDYTVTVRKTRGDDIDAACGQLVGDVI 352
>gi|440510102|ref|YP_007347538.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
gi|440454315|gb|AGC03807.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
Length = 373
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 231/355 (65%), Gaps = 7/355 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+++ + + + +LGE PFR+ Q+ +WI+ + DFN MT++S SL+ +LK I
Sbjct: 14 VNLLNMNKEELLIFFDKLGEKPFRSHQIMRWIYHYYCDDFNYMTNISKSLKIRLKQIAEI 73
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP I+ +Q+S DGT KW + + IETV+IPE R TLC+S+Q+GC + C FC T +Q
Sbjct: 74 RAPIIIKEQLSSDGTIKWAMKIDEQQIETVYIPENKRTTLCVSSQIGCPLGCSFCGTAQQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W + K IKI + + ITNIV MGMGEPLLN + + A+
Sbjct: 134 GFNRNLNVSEIIGQVWRAAQFINLNKKIKIKN-NRFPITNIVFMGMGEPLLNIVNVVSAI 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++IL D + LS+RH+ LST+GI+P I+KL + LA+SLHA N+ +RNK++PI+KKY
Sbjct: 193 RIILDDLGFKLSKRHITLSTAGIVPGIEKLKNMIDIPLAISLHAPNDIIRNKIMPINKKY 252
Query: 242 PLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ ++ A RY T S IT EY +L IND +HA +L ++ CKINL
Sbjct: 253 NINSVLEAARRYSIDTKSNHGRITIEYVLLKNINDDVLHAHQLAKQLQG----IPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N PN CS R++ F K+L+ I IRKIRG DINAACGQL+G+++
Sbjct: 309 IPWNPIPNIRYACSSQIRMRAFLKVLLKYNIITIIRKIRGADINAACGQLTGEVI 363
>gi|59711233|ref|YP_204009.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
ES114]
gi|423685341|ref|ZP_17660149.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
gi|75354452|sp|Q5E775.1|RLMN_VIBF1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
gi|371495253|gb|EHN70849.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
Length = 372
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/355 (45%), Positives = 226/355 (63%), Gaps = 12/355 (3%)
Query: 3 NLLDLSPLKF-VNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA Q+ KW++ FG DF++M +++ LR+KLK+ I
Sbjct: 7 NLLDFDRKGLRAFFSEELGEKAFRADQVMKWMYHFGCDDFDQMNNINKKLREKLKHKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSSDGTIKWAMKVGDQDVETVYIPDGDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EI+GQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLKVSEIVGQIWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D + LS+R V +STSG++ +D++ + V LA+SLHA + LR++++PI+ ++
Sbjct: 182 EIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKIDVALAISLHAPTDELRSQIMPINDRW 241
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+ + + RYI S R +T EY +L +ND HA +L L++ T KINL
Sbjct: 242 DIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLAELLKD----TPAKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFMKTLMEYDYTVTIRKTRGDDIDAACGQLVGDVI 352
>gi|15616897|ref|NP_240110.1| hypothetical protein BU286 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681651|ref|YP_002468037.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
gi|257471340|ref|ZP_05635339.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11387286|sp|P57373.1|RLMN_BUCAI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25320166|pir||D84963 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10038961|dbj|BAB12996.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219624494|gb|ACL30649.1| 23S rRNA m2A2503 methyltransferase (YfgB) [Buchnera aphidicola str.
5A (Acyrthosiphon pisum)]
Length = 363
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 228/353 (64%), Gaps = 13/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + LG F +Q+ WI+ + DFNKM ++S+ RKKL YI
Sbjct: 16 NLLDLNRQNLKYFLISLGAKNFCTEQVMSWIYNYYCDDFNKMLNISIKTRKKLYEKSYIF 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
A + ++IS+DGT KWI + IETV++PEK R+TLC+S+Q+GC++ C FC+TG++G
Sbjct: 76 ASEFIEEKISYDGTIKWITDINNQKIETVYMPEKKRSTLCVSSQIGCSLKCHFCATGQEG 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EII Q+W +L +EKNI K+ ITNIV MGMGEPLLN K+ + AL
Sbjct: 136 FQRNLKVSEIIAQIWQANKRL-KEKNI------KKNITNIVFMGMGEPLLNLKNVVSALT 188
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+IL ++ +GLS+R V LSTSGI+P +DKL V LA+SLHA N+ +RN ++PI++KY
Sbjct: 189 IILDEYGFGLSKRRVTLSTSGIVPALDKLRNMIDVSLAISLHAPNDFIRNIIMPINRKYN 248
Query: 243 LKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ ++ + +Y YS R IT EY ML IND++ +A +L L+ K KINLI
Sbjct: 249 ISSVLSSALKYFKYSNANRGGITIEYVMLDRINDSNENARQLSVLLSK----IPSKINLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
P+N F + +CS RI +FA IL G TIRK RG DINAACGQL+G I
Sbjct: 305 PWNSFSGPSFLCSNTDRINMFANILRKKGFTTTIRKNRGEDINAACGQLTGII 357
>gi|27904760|ref|NP_777886.1| hypothetical protein bbp265 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|46397192|sp|Q89AK8.1|RLMN_BUCBP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|27904157|gb|AAO26991.1| conserved hypothetical protein [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 373
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 229/352 (65%), Gaps = 11/352 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + +GE+ FRA+Q+ KWI++ DFNKMT++S+ LRKKL I
Sbjct: 17 TNLLNFDLQSMKKFFCSIGELEFRAQQVMKWIYQHYCDDFNKMTNISLQLRKKLSTLCCI 76
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ ++S DGT KW + IETV IP+ R TLCIS+Q+GC++ C FC TG+Q
Sbjct: 77 TPPKFLNHKVSVDGTMKWSVVIGNQCIETVCIPKNQRTTLCISSQLGCSLACSFCLTGQQ 136
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +NL V EIIGQ+W + KL I I + +ITN+V+MGMGEPLLN + + AL
Sbjct: 137 GFNKNLNVSEIIGQVWYIQ-KLIYFSKINITN----KITNVVLMGMGEPLLNLSNVVHAL 191
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L + +S+ H+ LST+GI+P + KL V LAVSLHASNN +RN+L+PI+KKY
Sbjct: 192 RIMLDEFGLNMSKNHITLSTAGIVPALKKLHTMIDVSLAVSLHASNNTIRNQLMPINKKY 251
Query: 242 PLKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ ++ A +Y+ YS + +T EY ML GIND HA EL +L++ KINL
Sbjct: 252 NIESVLCAIKKYLYYSNANKKRVTIEYVMLSGINDAAYHAEELFNLLKS----IPHKINL 307
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
IP+N F SN ICS + I FA IL+ G VTIRKIRG DINAACGQLSG
Sbjct: 308 IPWNHFSGSNYICSNDITINNFANILIKKGCIVTIRKIRGYDINAACGQLSG 359
>gi|218666070|ref|YP_002426339.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218518283|gb|ACK78869.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 362
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 215/352 (61%), Gaps = 17/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL L + GE PFRA Q+ +W+H V+DF MTD+S +LR +L I
Sbjct: 14 HLLGLGRQSLAKLLRTWGESPFRANQILQWLHTRQVTDFAAMTDISKTLRARLAAETRID 73
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++DQ + D TRKW+ + N IETVFIP ++R TLCIS+QVGC++ C FC+TG Q
Sbjct: 74 MPEIIADQTAADCTRKWLLRLPDGNAIETVFIPGEDRGTLCISSQVGCSLACSFCATGAQ 133
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
G RNL EII Q+ V L G ITNIV MGMGEP+LN + + AL
Sbjct: 134 GLSRNLETHEIIAQVRVARDFL-----------GLDAITNIVFMGMGEPMLNLREVLPAL 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D+AYG R + +ST+G++P +D+L E PV LA+SLHAS + +R+ LVP+++ Y
Sbjct: 183 DLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLHASRDEIRDILVPVNRHY 242
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC RY R ITFEY ML G+ND D HA EL+ L+R +NLIP
Sbjct: 243 PLAELLAACRRYPLPP-RRRITFEYVMLEGVNDADSHARELLRLLRD----IPAMVNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S+ S RI F I++ + R+ RG+DI AACGQL+G++
Sbjct: 298 FNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQLAGQV 349
>gi|198283710|ref|YP_002220031.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248231|gb|ACH83824.1| radical SAM enzyme, Cfr family [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 363
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 161/352 (45%), Positives = 215/352 (61%), Gaps = 17/352 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LL L + GE PFRA Q+ +W+H V+DF MTD+S +LR +L I
Sbjct: 15 HLLGLGRQSLAKLLRTWGESPFRANQILQWLHTRQVTDFAAMTDISKTLRARLAAETRID 74
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I++DQ + D TRKW+ + N IETVFIP ++R TLCIS+QVGC++ C FC+TG Q
Sbjct: 75 MPEIIADQTAADCTRKWLLRLPDGNAIETVFIPGEDRGTLCISSQVGCSLACSFCATGAQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
G RNL EII Q+ V L G ITNIV MGMGEP+LN + + AL
Sbjct: 135 GLSRNLETHEIIAQVRVARDFL-----------GLDAITNIVFMGMGEPMLNLREVLPAL 183
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+ D+AYG R + +ST+G++P +D+L E PV LA+SLHAS + +R+ LVP+++ Y
Sbjct: 184 DLLRDDYAYGFGARRITVSTAGVVPGMDRLGAESPVNLAISLHASRDEIRDILVPVNRHY 243
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC RY R ITFEY ML G+ND D HA EL+ L+R +NLIP
Sbjct: 244 PLAELLAACRRYPLPP-RRRITFEYVMLEGVNDADSHARELLRLLRD----IPAMVNLIP 298
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S+ S RI F I++ + R+ RG+DI AACGQL+G++
Sbjct: 299 FNPFPGSDYKRSPQVRIDAFRDIILRGNVMTVTRRPRGDDIAAACGQLAGQV 350
>gi|384544133|ref|YP_005728196.1| protein yfgB [Shigella flexneri 2002017]
gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
Length = 340
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/329 (47%), Positives = 219/329 (66%), Gaps = 13/329 (3%)
Query: 29 LQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNII 88
+ KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +
Sbjct: 1 MMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRV 60
Query: 89 ETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKN 148
ETV+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K
Sbjct: 61 ETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKI 114
Query: 149 I-KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM 207
+ G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P
Sbjct: 115 VGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA 174
Query: 208 IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFE 265
+DKL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T E
Sbjct: 175 LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIE 234
Query: 266 YCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKIL 325
Y ML +ND HA +L L++ T CKINLIP+N FP++ S NSRI F+K+L
Sbjct: 235 YVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVL 290
Query: 326 MNSGIFVTIRKIRGNDINAACGQLSGKIL 354
M+ G +RK RG+DI+AACGQL+G ++
Sbjct: 291 MSYGFTTIVRKTRGDDIDAACGQLAGDVI 319
>gi|431931243|ref|YP_007244289.1| 2-vinyl bacteriochlorophyllide hydratase [Thioflavicoccus mobilis
8321]
gi|431829546|gb|AGA90659.1| 23S rRNA m2A2503 methyltransferase [Thioflavicoccus mobilis 8321]
Length = 374
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 219/353 (62%), Gaps = 19/353 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+LLDL+ + G F + L KWIHK G++DF MTDLS LR +L + +
Sbjct: 17 DLLDLTRAGIEALVEGWGYKAFHGRNLFKWIHKHGLTDFEAMTDLSKRLRLRLAAACTVG 76
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP ++ +Q + DGT KW+ V IETVFIPE R TLCIS+QVGCA+ C FC+TG+Q
Sbjct: 77 APRVVLEQPAPDGTVKWLTEVGDGQRIETVFIPEAGRRTLCISSQVGCALGCAFCATGQQ 136
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL++ EIIGQ+W VT + + + +N+V+MGMGEPL N+ + + A
Sbjct: 137 GFARNLSLAEIIGQVWHVTRY-------LGVPP------SNVVLMGMGEPLANFDAAVAA 183
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++ D AY LS+ V LSTSGI+P I +L V LAVSLHA NN LR++LVPI++K
Sbjct: 184 MEILQDDFAYMLSKYRVTLSTSGIVPNIYRLGTVSDVALAVSLHAPNNALRDELVPINRK 243
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+ L+ AC Y+ R IT+EY ML G+ND A +LI L+ KINLI
Sbjct: 244 YPLEVLLPACKTYLRGDRRRRITWEYVMLDGVNDGMKEAKQLIRLLEG----IPSKINLI 299
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S R++ F + L+ SG+ T RK RG+ I AACGQL G++
Sbjct: 300 PFNPFPGGRFAASPPERVEAFRQRLLRSGLMTTTRKTRGDAIAAACGQLVGQV 352
>gi|209694315|ref|YP_002262243.1| ribosomal RNA large subunit methyltransferase N [Aliivibrio
salmonicida LFI1238]
gi|254807148|sp|B6EGY4.1|RLMN_ALISL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|208008266|emb|CAQ78411.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
Length = 383
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 228/357 (63%), Gaps = 14/357 (3%)
Query: 2 TNLLDLSPLKF-VNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
TNLLD + +ELGE FRA Q+ KW++ FG DF++M +++ LR+KLK
Sbjct: 6 TNLLDFDRKGLRAFFSEELGEKAFRADQIMKWMYHFGCDDFDQMNNINKKLREKLKQKCE 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
I+AP++ Q S DGT KW V +ETV+IP+ +R TLC+S+QVGCA+ C FCST +
Sbjct: 66 IRAPYVSEAQHSVDGTIKWAMKVGDQDVETVYIPDGDRATLCVSSQVGCALACTFCSTAQ 125
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL V EI+GQ+W ++ EK G+R ITN+VMMGMGEPLLN K+ + +
Sbjct: 126 QGFNRNLKVSEIVGQIWRAAREIGLEKET-----GRRPITNVVMMGMGEPLLNMKNLMPS 180
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L D +GLS+R V +STSG++ ++++ + V LA+SLHA + LR++++PI+ +
Sbjct: 181 LDIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGKVDVALAISLHAPTDKLRSEIMPINDR 240
Query: 241 YPLKELILACHR-YITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+ + E LAC R YI S R +T EY +L IND HA +L L++ T KI
Sbjct: 241 WNI-EAFLACVREYIASSNANRGRVTVEYVLLDHINDDMDHARQLAELLKD----TPAKI 295
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIPFN +P S NSRI F K LM VT+R+ RG+DI+AACGQL G ++
Sbjct: 296 NLIPFNPYPGSPYKKPSNSRIDRFMKTLMEYDFTVTVRRTRGDDIDAACGQLVGDVI 352
>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
Length = 339
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 155/327 (47%), Positives = 217/327 (66%), Gaps = 13/327 (3%)
Query: 31 KWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIET 90
KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +ET
Sbjct: 2 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVET 61
Query: 91 VFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI- 149
V+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K +
Sbjct: 62 VYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVG 115
Query: 150 KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMID 209
G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +D
Sbjct: 116 AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALD 175
Query: 210 KLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYC 267
KL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY
Sbjct: 176 KLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYV 235
Query: 268 MLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 327
ML +ND HA +L L++ T CKINLIP+N FP + S NSRI F+K+LM+
Sbjct: 236 MLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMS 291
Query: 328 SGIFVTIRKIRGNDINAACGQLSGKIL 354
G +RK RG+DI+AACGQL+G ++
Sbjct: 292 YGFTTIVRKTRGDDIDAACGQLAGDVI 318
>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
bacterium]
Length = 358
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 169/355 (47%), Positives = 225/355 (63%), Gaps = 17/355 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL LS + + +LGE P+R KQ KWI+ DFN+M +LS LR+KL ++
Sbjct: 6 NLFGLSQSELDTFFSKLGEKPYRTKQFMKWIYHQHEFDFNQMLNLSKELRQKLLQVATLE 65
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I S + DG KW+ + N IE V+IPEK+R TLCIS+QVGC++ C FCSTG Q
Sbjct: 66 LPKISSQNFASDGLIKWLIDLGSDNHIEMVYIPEKDRGTLCISSQVGCSLACTFCSTGMQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EII Q+ + L E ++I+N+V MGMGEPLLN KS A
Sbjct: 126 GFNRNLTTAEIIAQIIIANEHLSHEN---------KKISNVVFMGMGEPLLNEKSVYSAC 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D A+GLSRR V +STSG++P + ++AQ PV LA+SLHA ++ LR++LVPI++KY
Sbjct: 177 DLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTPVSLAISLHAPDDELRDELVPINQKY 236
Query: 242 PLKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
P++EL+ AC Y+T RH I FEY ML G+NDT HA +L L+R S K+NL
Sbjct: 237 PIEELMAACKNYLTSGTQERH-ILFEYVMLDGVNDTMEHAKKLAKLLRG----ISAKVNL 291
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP + SK IK F +L +GI R+ RG D++ ACGQL+GK++
Sbjct: 292 IPFNPFPKTQYKTSKAFTIKQFQDVLFQAGIRTMTRRTRGEDVDGACGQLAGKVI 346
>gi|323143782|ref|ZP_08078450.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
gi|322416495|gb|EFY07161.1| 23S rRNA m2A2503 methyltransferase [Succinatimonas hippei YIT
12066]
Length = 357
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 222/343 (64%), Gaps = 12/343 (3%)
Query: 14 NYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF 73
++ LGE PFRA Q KWI+++GV+DF+ MT++ LR+KLK IKAP I+++Q S
Sbjct: 10 DFAVSLGEKPFRATQFLKWIYQYGVTDFDLMTNIKKDLREKLKEIACIKAPEIVTEQRSS 69
Query: 74 DGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEI 132
DGT KW + ++ETV IPE+ RNTLCISTQVGC + C FC TG GF RNL+V EI
Sbjct: 70 DGTVKWALDIGDGQLVETVLIPEEGRNTLCISTQVGCPVKCAFCRTGASGFNRNLSVSEI 129
Query: 133 IGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
IGQ+W ++ +N + ++ I+N+VMMGMGEPL N + + +++L+D+A+ L
Sbjct: 130 IGQVWRAASRVGFSQN-----EEQKPISNVVMMGMGEPLYNVDAVLKVTEILLNDNAFAL 184
Query: 193 SRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252
S+R V +STSG+ P+IDK+A + V LA+SLHA N+ LR+ LVP++KKY + ++ +
Sbjct: 185 SKRRVTISTSGVAPIIDKIAGKVDVALALSLHAPNDELRDVLVPLNKKYKIDVVLKSVRN 244
Query: 253 YITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL 310
Y++ S + T EY +L IND+ A EL L++ T CKINLIPFN S
Sbjct: 245 YLSKSNANCGKATIEYVLLDHINDSTDQAEELARLLKD----TPCKINLIPFNPHEQSEF 300
Query: 311 ICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NSR+ F K+L G V R RG+DI AACGQL+G++
Sbjct: 301 KRPSNSRVDRFYKVLTGHGYTVMTRTTRGDDIAAACGQLAGQV 343
>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|81741588|sp|Q8D1Y5.1|RLMN_WIGBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 382
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 234/354 (66%), Gaps = 11/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
N+L + + ++ ++GE FRA+Q+ KWI+K D + MTD S +L+ KLKN + I
Sbjct: 27 NILGKTREELYDFFIKIGEEKFRAEQIMKWIYKRYCDDVSLMTDFSKNLKNKLKNIIKID 86
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
I S+ IS DGT KW+ + IETV+IPE NR TLCIS+Q+GCA+NC FC+T QG
Sbjct: 87 HLDIESENISQDGTIKWVLKINDQNIETVYIPEINRATLCISSQIGCALNCKFCATSYQG 146
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL EII Q+W + N K+ ++ITNIVMMGMGEPLLN K+ + A+K
Sbjct: 147 FNRNLNSYEIISQIWYAMKIINDRNNFKL-----KKITNIVMMGMGEPLLNLKNLVPAIK 201
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+IL ++ +GLS+R + +ST+GI P+I KL + V+LA+SLHA N+ +RNK++PI+KKY
Sbjct: 202 IILDNYGFGLSKRRITISTAGISPVIKKLGKLIDVKLAISLHAPNDIIRNKIMPINKKYN 261
Query: 243 LKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+K ++L+ +YI+ S + I+ EY ML+ IND HA +LI+ ++ CKINLI
Sbjct: 262 IKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQLINCLKN----IPCKINLI 317
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N FP CS ++I F KIL+ GI TIRK RG DI AACGQLSG ++
Sbjct: 318 PWNPFPYVKYKCSNFNKINNFYKILIKHGITTTIRKQRGIDIKAACGQLSGNVI 371
>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 315
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/324 (47%), Positives = 216/324 (66%), Gaps = 13/324 (4%)
Query: 31 KWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIET 90
KW++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +ET
Sbjct: 1 KWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVET 60
Query: 91 VFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI- 149
V+IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K +
Sbjct: 61 VYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVG 114
Query: 150 KINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMID 209
G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +D
Sbjct: 115 AAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALD 174
Query: 210 KLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYC 267
KL V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY
Sbjct: 175 KLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYV 234
Query: 268 MLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 327
ML +ND HA +L L+++ T CKINLIP+N FP + S NSRI F+K+LM+
Sbjct: 235 MLDHVNDGTEHAHQLAELLKE----TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMS 290
Query: 328 SGIFVTIRKIRGNDINAACGQLSG 351
G +RK RG+DI+AACGQL+G
Sbjct: 291 YGFTTIVRKTRGDDIDAACGQLAG 314
>gi|375336921|ref|ZP_09778265.1| ribosomal RNA large subunit methyltransferase N
[Succinivibrionaceae bacterium WG-1]
Length = 369
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/354 (44%), Positives = 221/354 (62%), Gaps = 12/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + + LGE FRAKQ+ KWI++FGV+DF +MT++ L+ KL YIK
Sbjct: 8 NLLNFDYEALEKFVESLGEKKFRAKQIMKWIYQFGVTDFAEMTNIKRDLQVKLSEIAYIK 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I S DGT KW +IETV+IP+ +R TLC+STQVGCA+NC FC+TG Q
Sbjct: 68 APEIKVQNNSADGTIKWALDAGDGQLIETVYIPDGDRATLCVSTQVGCAVNCAFCATGAQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
G+ RNL EIIGQ+W + N K+ R I N+V+MGMGEPL N + + A+
Sbjct: 128 GYNRNLKTSEIIGQVWRATSCIGFTPNPKL-----RAIDNVVLMGMGEPLFNLDNVVPAM 182
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K++L D +GLS+R V +ST+G++P IDKL V LA+SLHA N+ LR KLVP++++Y
Sbjct: 183 KIMLDDLGFGLSKRRVTISTAGVVPNIDKLGDMIDVALAISLHAPNDELRTKLVPLNERY 242
Query: 242 PLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
+K ++ A RY++ S + +T EY +L G+ND+ A EL + T CKINL
Sbjct: 243 NIKSILDAVARYVSKSNANSGRVTIEYVLLAGVNDSPKQAKELAKTLAN----TPCKINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +S+ + F ++L++ G V RK RG+DI AACGQL G++
Sbjct: 299 IPFNPHQDSSFKKPSIEAVNKFYQVLIDHGFTVVTRKTRGDDIKAACGQLVGEV 352
>gi|384085567|ref|ZP_09996742.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 363
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 213/335 (63%), Gaps = 17/335 (5%)
Query: 20 GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKW 79
GE PFRAKQ+ +WIH ++DF +M+++S +LR +L P I++DQ++ DGTRKW
Sbjct: 32 GESPFRAKQILQWIHGRQITDFAEMSNISKALRARLSEETQYAEPEILADQLAADGTRKW 91
Query: 80 IFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWV 138
+ + N IETVFIPE++R TLC+S+QVGC++ C FC+TG QG RNL EII Q+
Sbjct: 92 LLGLPDGNAIETVFIPEEDRGTLCVSSQVGCSLACSFCATGAQGLNRNLDTHEIIAQI-- 149
Query: 139 TEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVI 198
R + I QG ITNIV MGMGEPLLN + + AL L+ D AYG + +
Sbjct: 150 -----RTARQI----QGLDAITNIVFMGMGEPLLNLRQVLPALDLLRDDFAYGFGPKRIT 200
Query: 199 LSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258
+ST+G++P +D+L E PV LA+SLHAS + +R+ LVP+++ YPL EL+ AC RY
Sbjct: 201 VSTAGVVPGLDRLGAESPVNLAISLHASRDEVRDVLVPVNRHYPLAELLDACRRYPLLP- 259
Query: 259 RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRI 318
R ITFEY ML G+ND+D A L+ ++ +NLIPFN FP S+ S RI
Sbjct: 260 RRRITFEYVMLDGVNDSDADARALLRILSG----IPAMVNLIPFNSFPGSDYKRSPQKRI 315
Query: 319 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F I++ + R+ RG+DI AACGQL+G++
Sbjct: 316 DAFRDIILRGDVMTVTRRPRGDDIAAACGQLAGQV 350
>gi|83594658|ref|YP_428410.1| hypothetical protein Rru_A3329 [Rhodospirillum rubrum ATCC 11170]
gi|123753053|sp|Q2RP22.1|RLMN_RHORT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83577572|gb|ABC24123.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
Length = 428
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 210/353 (59%), Gaps = 8/353 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ LS + +++GE PFRAKQL W++ G +DF+ MT L LR KL + +
Sbjct: 49 NLVGLSREEIAALLRDMGEKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAETCVVA 108
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
PH++ +Q S DGTRKW+ N ETV+IPE +R LC+S+QVGC + C FC TG Q
Sbjct: 109 RPHVVREQRSEDGTRKWLLRFPDGNEAETVYIPEDDRGALCVSSQVGCTLTCRFCHTGTQ 168
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
VRNLT EI+GQ + S RQ++NIV+MGMGEPL NY + A+
Sbjct: 169 LLVRNLTAHEIVGQFMAARDAYGEWPSPTDES---RQLSNIVLMGMGEPLYNYDNVAKAI 225
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L + +SRR + LSTSG++PMI + E V LAVSLHA+ + +R++++PI++KY
Sbjct: 226 GILLDNEGIAVSRRRITLSTSGVVPMIRRCGAELGVNLAVSLHAARDEIRDEIMPINRKY 285
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PL EL+ AC Y S ITFEY ML G+ND++ A LI L+ CK NLIP
Sbjct: 286 PLAELMAACREYPGASNARRITFEYVMLKGVNDSEADARALIKLVEG----VPCKFNLIP 341
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN +P S C I+ FA IL +G IR RG DI AACGQL L
Sbjct: 342 FNPWPGSGFECPPIRHIERFANILFEAGYTAPIRMPRGRDILAACGQLRSDSL 394
>gi|244538894|dbj|BAH82937.1| predicted enzyme [Candidatus Ishikawaella capsulata Mpkobe]
Length = 387
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 228/354 (64%), Gaps = 10/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + L+ ++ L E F A Q+ +WI+ + F MT++S L+ KL I
Sbjct: 37 NLLSFNRLQMRDFFISLEEKAFNADQVMQWIYHYHCDKFEIMTNISQRLQSKLSKLAIIS 96
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ ++ S DGT KW + +IETV+IPE NR+TLCIS+Q+GC + C FC+TG+QG
Sbjct: 97 APEVVEEKCSADGTIKWSMRIDDQLIETVYIPENNRSTLCISSQIGCTVGCKFCATGKQG 156
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W K+ RE + S KR TNIV+MGMGEPLLN K+ + ++
Sbjct: 157 FNRNLEVAEIIGQIWQAS-KILRETKL---SSRKRLFTNIVLMGMGEPLLNVKNVVSSIH 212
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
++L +GLS+R V +ST+GI+P I KLA V LA+SLHA N+ +R+K++PI+KKY
Sbjct: 213 IMLDKFGFGLSKRRVTISTAGIVPAIYKLASMIDVGLAISLHAPNDLIRDKIMPINKKYN 272
Query: 243 LKELILACHRYIT--YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ L+ A YI + R IT EY ML+ IND+ HA +L L++ KINLI
Sbjct: 273 IAMLLAAVKHYIENGVANRGKITIEYVMLNHINDSVEHAHQLARLLKN----IPSKINLI 328
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N F S+ + S +S+I IFAKIL+ G IRK RG+DI+AACGQL+G ++
Sbjct: 329 PWNYFKGSSYLRSSDSQINIFAKILIEYGFTTIIRKTRGDDIDAACGQLTGNVI 382
>gi|365858071|ref|ZP_09398029.1| 23S rRNA m2A2503 methyltransferase [Acetobacteraceae bacterium
AT-5844]
gi|363714792|gb|EHL98275.1| 23S rRNA m2A2503 methyltransferase [Acetobacteraceae bacterium
AT-5844]
Length = 403
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 154/350 (44%), Positives = 219/350 (62%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + +GE PFRAKQL WI+ GV+DF++M ++ +++ KL +
Sbjct: 39 DLVGLSREELAAEMVAIGEKPFRAKQLWHWIYHQGVTDFSRMPSIAKTMQAKLAEKFVVG 98
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIP--EKNRNTLCISTQVGCAINCIFCSTG 119
P + ++Q S DGTRKW+F + + +ETV+IP E++R +CISTQVGC ++C FC TG
Sbjct: 99 RPGVTTEQTSTDGTRKWVFAFRDDQKVETVYIPDQEEDRGAVCISTQVGCTLSCKFCHTG 158
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ S R ++NIV+MGMGEPL NY++
Sbjct: 159 TQKLVRNLGAAEIVGQFMAARDSYNEWPTPTDGS--PRLLSNIVIMGMGEPLYNYENVAK 216
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ + LSRR + LSTSG++PM+DK E V LAVSLHA N++R+++VP+++
Sbjct: 217 AMRIIMDNEGIALSRRRITLSTSGVVPMMDKCGAELNVGLAVSLHAVRNDIRDEIVPLNR 276
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++EL+ AC RY S ITFEY ML G+ND++ A EL+ L++ K+NL
Sbjct: 277 KYPIEELMAACRRYPAASNARRITFEYVMLKGVNDSEADARELVRLLKG----IPAKVNL 332
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S S N+ I FA+I+ +G IR RG DI AACGQL
Sbjct: 333 IPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRAPRGRDILAACGQL 382
>gi|424864659|ref|ZP_18288562.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
gi|400759405|gb|EJP73587.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
Length = 360
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 225/353 (63%), Gaps = 16/353 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL LS V++ +G+ FRA Q KW+H+ G +F++MTD ++ LR++LK I+
Sbjct: 6 NLLGLSHKSLVDFFHNIGQPSFRANQFLKWVHQRGCLNFDEMTDFNIPLREQLKEIASIE 65
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+ +S DGT K+ + +I+E V IPE+ RNTLCIS+Q GCA+ C FC+TG Q
Sbjct: 66 TPKILESSLSKDGTEKFAIKLNSGSIVEMVVIPEEKRNTLCISSQAGCALQCTFCATGAQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NLT EIIGQLW+ N N KR+ITN+V MGMGEPLLNY++ + +
Sbjct: 126 GFDSNLTSSEIIGQLWLA-------NNFSTN---KRKITNVVFMGMGEPLLNYENVVESA 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++ +AYGLSR+ + +STSGI+P I L + V LA+SLHA N++LRN++VPI+ KY
Sbjct: 176 QIMKDQNAYGLSRKRITISTSGIVPQILNLPNDIDVSLAISLHAPNDDLRNEIVPINNKY 235
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
PLKELI +C Y+ +++ + IT EY ++ +ND+ HA EL ++ +CKINLI
Sbjct: 236 PLKELISSCKTYLKSFTNKKNITIEYILIKEVNDSLEHAKELSKILNH----LNCKINLI 291
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN F + S + I F LM G T+R+ RG+ I+ ACGQL G +
Sbjct: 292 PFNPFDGCDYERSSDQDINAFKSFLMKKGFIATVRRTRGDLIDGACGQLVGNL 344
>gi|417703098|ref|ZP_12352209.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
Length = 336
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 216/325 (66%), Gaps = 13/325 (4%)
Query: 33 IHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVF 92
++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +ETV+
Sbjct: 1 MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVY 60
Query: 93 IPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI 151
IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K +
Sbjct: 61 IPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVGAA 114
Query: 152 NSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKL 211
G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +DKL
Sbjct: 115 KVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 174
Query: 212 AQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYCML 269
V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY ML
Sbjct: 175 GDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVML 234
Query: 270 HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSG 329
+ND HA +L L++ T CKINLIP+N FP++ S NSRI F+K+LM+ G
Sbjct: 235 DHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVLMSYG 290
Query: 330 IFVTIRKIRGNDINAACGQLSGKIL 354
+RK RG+DI+AACGQL+G ++
Sbjct: 291 FTTIVRKTRGDDIDAACGQLAGDVI 315
>gi|365108779|ref|ZP_09336577.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
gi|363640248|gb|EHL79739.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
Length = 336
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/325 (47%), Positives = 215/325 (66%), Gaps = 13/325 (4%)
Query: 33 IHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVF 92
++ + +F+ MTD++ LR KLK I+AP ++ +Q S DGT KW V +ETV+
Sbjct: 1 MYHYCSDNFDDMTDINKVLRNKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVY 60
Query: 93 IPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI 151
IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K + +
Sbjct: 61 IPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVGAV 114
Query: 152 NSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKL 211
+ G R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +DKL
Sbjct: 115 KATGVRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 174
Query: 212 AQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYCML 269
V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY ML
Sbjct: 175 GDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVML 234
Query: 270 HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSG 329
IND HA +L L++ T CKINLIP+N FP + S NSRI F+K+LM+ G
Sbjct: 235 DHINDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYG 290
Query: 330 IFVTIRKIRGNDINAACGQLSGKIL 354
+RK RG+DI+AACGQL+G ++
Sbjct: 291 FTTIVRKTRGDDIDAACGQLAGDVI 315
>gi|417609142|ref|ZP_12259645.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
gi|345358351|gb|EGW90539.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
Length = 336
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 215/325 (66%), Gaps = 13/325 (4%)
Query: 33 IHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVF 92
++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +ETV+
Sbjct: 1 MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVY 60
Query: 93 IPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI 151
IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K +
Sbjct: 61 IPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVGAA 114
Query: 152 NSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKL 211
G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +DKL
Sbjct: 115 KVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 174
Query: 212 AQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYCML 269
V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY ML
Sbjct: 175 GDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVML 234
Query: 270 HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSG 329
+ND HA +L L++ T CKINLIP+N FP + S NSRI F+K+LM+ G
Sbjct: 235 DHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYG 290
Query: 330 IFVTIRKIRGNDINAACGQLSGKIL 354
+RK RG+DI+AACGQL+G ++
Sbjct: 291 FTTIVRKTRGDDIDAACGQLAGDVI 315
>gi|424862911|ref|ZP_18286824.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
gi|400757532|gb|EJP71743.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86A]
Length = 359
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 222/353 (62%), Gaps = 16/353 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL S ++ ++GE +RAKQ+ KWIH+ GV DF++MTDL+ LR KL N +IK
Sbjct: 6 NLLGYSLESLKDFFTDIGEQSYRAKQVLKWIHQKGVLDFSEMTDLNKDLRNKLNNHAFIK 65
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I + IS +GT+K++ + ++IE V IPE R TLCIS+Q GCA+ C FC+TG Q
Sbjct: 66 PPQIEEEFISNEGTKKYLLKLDSGSMIEMVIIPEGKRRTLCISSQAGCALACTFCATGAQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +NL EIIGQLW+ F N + + ITN+V MGMGEPLLN+ + I +
Sbjct: 126 GFDQNLNSSEIIGQLWLANF----------NKKNNKLITNVVFMGMGEPLLNFDAVIESA 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K++ YGLSR+ + +ST+GI+P I KL V LA+SLHASN+ LR+++VPI+KKY
Sbjct: 176 KIMKDQLGYGLSRKRITISTAGIVPNIKKLNNYVDVSLAISLHASNDVLRDEIVPINKKY 235
Query: 242 PLKELILACHRYI-TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+++L+ AC Y+ + R +T EY ++ +ND+ A L+ L+ K CKINLI
Sbjct: 236 PIEKLLNACQDYLGKENKRKHVTIEYILIKNVNDSLEDAKGLVKLLSK----LPCKINLI 291
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN F SN N I F L+N G T+R RG+ ++AACGQL G +
Sbjct: 292 PFNSFNGSNYERPCNKTINDFKSFLINKGFIATLRTTRGDGVDAACGQLVGNL 344
>gi|384228284|ref|YP_005620019.1| 2-vinyl bacteriochlorophyllide hydratase [Buchnera aphidicola str.
Ua (Uroleucon ambrosiae)]
gi|345539217|gb|AEO08084.1| 23S rRNA m2A2503 methyltransferase [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 361
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 166/354 (46%), Positives = 226/354 (63%), Gaps = 13/354 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ K + LG F +Q+ W++ DFNKM ++S+ +R KL I
Sbjct: 16 NLLDLNRKKLKIFLMSLGAKSFSTQQIMHWMYNHYCDDFNKMLNISIKIRSKLYEQSIIF 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
A + ++ISFDGT KWI + IETV+IPEK R TLC+S+Q+GC + C FC+TG+
Sbjct: 76 ASKFIEERISFDGTIKWITSINDQKIETVYIPEKKRATLCVSSQIGCPLKCHFCATGQNN 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EII Q+W + I K +ITNIV MGMGEPLLN + + A++
Sbjct: 136 FQRNLKVSEIIAQIW-------QANKILKKKNIKNRITNIVFMGMGEPLLNLNNVVTAIQ 188
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+IL ++ +GLS+R + LSTSGI+P +DKL V LA+SLHA N+ +RN ++PI+KKY
Sbjct: 189 IILDEYGFGLSKRRITLSTSGIVPALDKLKHMIDVCLAISLHAPNDYIRNLIMPINKKYN 248
Query: 243 LKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ ++ + +Y+ YS R+ IT EY ML IND++ +A EL +L++ KINLI
Sbjct: 249 INCVLNSAKKYLQYSHANRNGITIEYVMLDNINDSNNNAEELANLLKN----IPSKINLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
P+N F S+ ICS +RI IFA IL N G V IRK RG DINAACGQL+GKI+
Sbjct: 305 PWNSFLGSSFICSNMNRINIFANILRNKGFIVIIRKNRGQDINAACGQLTGKIV 358
>gi|419076554|ref|ZP_13622068.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
gi|377920951|gb|EHU84965.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
Length = 336
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 215/325 (66%), Gaps = 13/325 (4%)
Query: 33 IHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVF 92
++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +ETV+
Sbjct: 1 MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVY 60
Query: 93 IPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI 151
IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K +
Sbjct: 61 IPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVGAA 114
Query: 152 NSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKL 211
G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +DKL
Sbjct: 115 KVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 174
Query: 212 AQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYCML 269
V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY ML
Sbjct: 175 GDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVML 234
Query: 270 HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSG 329
+ND HA +L L++ T CKINLIP+N FP + S NSRI F+K+LM+ G
Sbjct: 235 DHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPAAPYGRSSNSRIDRFSKVLMSYG 290
Query: 330 IFVTIRKIRGNDINAACGQLSGKIL 354
+RK RG+DI+AACGQL+G ++
Sbjct: 291 FTTIVRKTRGDDIDAACGQLAGDVI 315
>gi|336233285|ref|YP_004590031.1| pyruvate formate lyase activating enzyme [Buchnera aphidicola
(Cinara tujafilina)]
gi|335345226|gb|AEH39772.1| putative pyruvate formate lyase activating enzyme [Buchnera
aphidicola (Cinara tujafilina)]
Length = 363
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 222/351 (63%), Gaps = 9/351 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + ++ + LGE FRA QL WI+K +FN M + S L+KKL IK
Sbjct: 13 NLLNFNLIQMKEFFLSLGEKKFRALQLMDWIYKKYCCNFNFMDNFSDILKKKLNEIAIIK 72
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P +S +IS DGT KW F V +ET++IPEKNR+TLCIS+Q+GC + C FC+TG G
Sbjct: 73 PPQYISKKISMDGTIKWNFFVDSGYVETIYIPEKNRSTLCISSQIGCVLKCNFCATGNLG 132
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EIIGQ+W + + I + +ITNIVMMGMGEPLLN K+ I AL
Sbjct: 133 FTRNLLVSEIIGQIWYIMNIIYHKSYINFSLS---KITNIVMMGMGEPLLNLKNVIPALH 189
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+ILS + + S+ V LST+GI+P I K+ + V LA+SLHASN+ LRN L+PI+KK+
Sbjct: 190 IILSKYGFSFSKHKVTLSTAGIVPAIKKICGKIDVSLAISLHASNDLLRNTLMPINKKFN 249
Query: 243 LKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ L+ Y+ +S R M+T EY ML IND+ +A EL+ L++ SCKINLI
Sbjct: 250 ISSLLTVVKEYLNFSKANRSMVTIEYVMLKNINDSITNAFELVLLLKN----ISCKINLI 305
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
P+N +S CS I F++ L+ G+ V IRK RG+DI AACGQLSG
Sbjct: 306 PWNPIKDSTYQCSTVETILKFSEYLVKRGLIVKIRKNRGSDIYAACGQLSG 356
>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
gi|205829924|sp|A5CX33.1|RLMN_VESOH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
Length = 356
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 225/355 (63%), Gaps = 17/355 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L+ ++ LGE +R KQ+ +WI+K DF+KM + S SLR++L I+
Sbjct: 5 NLLSLNQDALNDFFVCLGEKHYRTKQIMQWIYKVHEFDFDKMFNFSKSLREELNKIACIE 64
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ + + D KW+ + + N IE V+IPEK+R TLCIS+QVGCA+ C FCSTG Q
Sbjct: 65 FPKVVKQKFALDKVIKWVLALSEDNYIEMVYIPEKDRGTLCISSQVGCALACTFCSTGMQ 124
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +NLT EII Q+ + N +NS+ KR I+NIV MGMGEPLLN ++ A
Sbjct: 125 GFNKNLTTAEIIAQVLIA--------NKYLNSKTKR-ISNIVFMGMGEPLLNEQAVYNAC 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D A+GLSRR V +STSGI+P I ++++ PV LA+SLHA NN LR+KLVP+++KY
Sbjct: 176 DLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTPVSLAISLHAPNNQLRDKLVPVNQKY 235
Query: 242 PLKELILACHRYITY--SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++EL+ AC Y+ RH I FEY ML +ND+ HA +L L++ S K+NL
Sbjct: 236 SIEELLKACKVYLNAGTQERH-ILFEYVMLKDVNDSTEHANKLAKLLKA----ISAKVNL 290
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN F + S I+ F IL GI +R+ RG DI+ ACGQL+GK+L
Sbjct: 291 IPFNSFERTQYQSSNAQTIEKFQDILYQQGIRTMMRRTRGEDIDGACGQLAGKVL 345
>gi|417367061|ref|ZP_12139100.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|353590196|gb|EHC48787.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
Length = 336
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 216/325 (66%), Gaps = 13/325 (4%)
Query: 33 IHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVF 92
++ + +F++MTD++ LR KLK I+AP ++ +Q S DGT KW V +ETV+
Sbjct: 1 MYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQRVETVY 60
Query: 93 IPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI 151
IPE +R TLC+S+QVGCA+ C FCST +QGF RNL V EIIGQ+W R K +
Sbjct: 61 IPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIVGAA 114
Query: 152 NSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKL 211
G+R ITN+VMMGMGEPLLN + + A++++L D +GLS+R V LSTSG++P +DKL
Sbjct: 115 KVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL 174
Query: 212 AQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM--ITFEYCML 269
V LA+SLHA N+ +R+++VPI+KKY ++ + A RY+ S + +T EY ML
Sbjct: 175 GDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVML 234
Query: 270 HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSG 329
+ND HA +L L+++ T CKINLIP+N FP + S NSRI F+K+LM+ G
Sbjct: 235 DHVNDGTEHAHQLAELLKE----TPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYG 290
Query: 330 IFVTIRKIRGNDINAACGQLSGKIL 354
+RK RG+DI+AACGQL+G ++
Sbjct: 291 FTTIVRKTRGDDIDAACGQLAGDVI 315
>gi|316931629|ref|YP_004106611.1| radical SAM protein [Rhodopseudomonas palustris DX-1]
gi|315599343|gb|ADU41878.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris DX-1]
Length = 399
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 223/361 (61%), Gaps = 22/361 (6%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G P RA+QL W++ G DF++MT++S +R L
Sbjct: 25 SLIGLSRAQLCDRLGEIGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLAEH 84
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
V + P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 85 VTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGCTL 144
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ---GKRQITNIVMMGMG 168
NC FC TG Q VRNLT GEI+GQ+ V +L N I+ + G R ITNIVMMGMG
Sbjct: 145 NCAFCHTGTQRLVRNLTAGEIVGQVMVARDRL----NDWIDRETPNGNRLITNIVMMGMG 200
Query: 169 EPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNN 228
EPL N+ + AL ++ + G+SRR + LSTSG++P I + E V LA+SLHA +
Sbjct: 201 EPLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRD 260
Query: 229 NLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRK 288
LR++LVP+++KYPLKEL+ AC Y S ITFEY ML G+NDT A +L+ L++
Sbjct: 261 ELRDELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDTIDDARKLVQLLKG 320
Query: 289 NKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQ 348
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQ
Sbjct: 321 ----IPAKINLIPFNPWPGSKYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQ 376
Query: 349 L 349
L
Sbjct: 377 L 377
>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|205829871|sp|A1AW44.1|RLMN_RUTMC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 356
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 222/354 (62%), Gaps = 15/354 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL + ++ LGE P+R KQ+ +WI+K DF KM + S SLR +L V ++
Sbjct: 5 NLLSFNQNALNDFFVGLGEKPYRTKQIMQWIYKDHEFDFEKMLNFSKSLRDELSKVVCVE 64
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
++ DG KW+ + KN IE ++IPEKNR TLCIS+QVGC + C FCSTG Q
Sbjct: 65 LLRVVKQNFILDGVIKWVLALDKNNHIEMIYIPEKNRGTLCISSQVGCGLACTFCSTGMQ 124
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF +NLT EII Q+ + L NS+ KR I+N+V MGMGEPLLN + A
Sbjct: 125 GFNKNLTTAEIIAQVLIASRYL--------NSKTKR-ISNVVFMGMGEPLLNEHAVYNAC 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D A+GLSRR V +STSG++P + ++++ PV LAVSLHAS+++LRN+LVPI++KY
Sbjct: 176 DLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTPVSLAVSLHASDDHLRNELVPINQKY 235
Query: 242 PLKELILACHRYITY-SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
L+EL+ AC Y+ + + I FEY ML G+ND+ HA +L+ L++ S KINLI
Sbjct: 236 SLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKLVKLLKG----ISAKINLI 291
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
PFN F + S I+ F IL + GI R+ RG DI ACGQL+GK+L
Sbjct: 292 PFNSFEKTQYQTSSAQTIEKFQNILYHQGIRTMTRRTRGEDIGGACGQLAGKVL 345
>gi|409399860|ref|ZP_11250068.1| iron-sulfur (Fe-S) cluster redox enzyme [Acidocella sp. MX-AZ02]
gi|409131005|gb|EKN00732.1| iron-sulfur (Fe-S) cluster redox enzyme [Acidocella sp. MX-AZ02]
Length = 387
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/354 (43%), Positives = 219/354 (61%), Gaps = 9/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + GE PFRAKQL WI+ GV DF M++++ L++KL I
Sbjct: 33 DLVGLSREELLEEVAAFGEKPFRAKQLWHWIYHQGVRDFAAMSNIAKPLQEKLAQRFVIG 92
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P + +DQ+S D TRK++F + + +ETV+IP++ +R +C+S+QVGC ++C FC TG
Sbjct: 93 RPEVATDQLSKDETRKFLFRFRDHEAVETVYIPDRQEDRGAVCLSSQVGCTLSCRFCHTG 152
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q RNL+ EI+GQ + + + R ++ IV+MGMGEPL NY++
Sbjct: 153 TQRLSRNLSAAEIVGQFMAARDAYGEWPSPR--GETPRLLSTIVLMGMGEPLYNYENVAK 210
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ LSRR + LSTSG++PM+D+ +E V LAVSLHA ++LR++LVP+++
Sbjct: 211 AMKIIMDGEGIALSRRRITLSTSGVVPMMDRAGEELGVNLAVSLHAVRDDLRDELVPLNR 270
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP+KELI ACHRY S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 271 KYPIKELIEACHRYPGASNARRITFEYVMLRGVNDSEAEAHELVRLIAG----LPAKVNL 326
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S +K FA I+M +G IR RG DI AACGQL +
Sbjct: 327 IPFNPWPGSAYQPSTPEALKKFAAIVMQAGYASPIRTPRGRDILAACGQLKSDV 380
>gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
Length = 409
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 222/353 (62%), Gaps = 15/353 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + V +GE PFRAKQL WI+ GV+DF++M+ ++ +++ KL +
Sbjct: 43 DLVGLSREELVAEMVAIGEKPFRAKQLWHWIYHQGVTDFSQMSTIAKAMQGKLAERFVVG 102
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIP--EKNRNTLCISTQVGCAINCIFCSTG 119
P + ++Q S DGTRKW+F + +ETV+IP E++R +C+STQVGC ++C FC TG
Sbjct: 103 RPGVTTEQTSTDGTRKWLFGFRDGQQVETVYIPDPEEDRGAVCVSTQVGCTLSCKFCHTG 162
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK---RQITNIVMMGMGEPLLNYKS 176
Q VRNL EI+GQ F R+ + S R ++ IV+MGMGEPL NY++
Sbjct: 163 TQKLVRNLGAAEIVGQ-----FMAARDSYGEWPSPTDGTPRLLSTIVIMGMGEPLYNYEN 217
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
A+++I+ LSRR + LSTSG++PM+D+ E V LAVSLHA N++R+++VP
Sbjct: 218 VAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAELGVGLAVSLHAVRNDIRDEIVP 277
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYP++EL+ AC RY S ITFEY ML G+ND++ A EL+ L++ K
Sbjct: 278 LNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELVRLLQG----IPAK 333
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+NLIPFN +P S S N+ I FA+I+ +G IR RG DI AACGQL
Sbjct: 334 VNLIPFNPWPGSPYETSSNNAIHRFARIVQEAGYASPIRTPRGRDILAACGQL 386
>gi|357386283|ref|YP_004901007.1| ribosomal RNA large subunit methyltransferase N [Pelagibacterium
halotolerans B2]
gi|351594920|gb|AEQ53257.1| ribosomal RNA large subunit methyltransferase N [Pelagibacterium
halotolerans B2]
Length = 399
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/365 (44%), Positives = 216/365 (59%), Gaps = 22/365 (6%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+LL LS + E G + RA QL WI+ G +DF M++++ LR L +
Sbjct: 22 DLLGLSKKEISARLAETGLSERDSRMRASQLWNWIYVNGATDFGAMSNIAKGLRADLAQA 81
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHVKKNI--------IETVFIPEKNRNTLCISTQVGCA 110
I P I+S+Q+S DGTRKW+F + +ETV+IPE +R TLC+S+QVGC
Sbjct: 82 FTIGRPEIVSEQVSNDGTRKWLFRFRDPAHPNMPPVEVETVYIPESDRGTLCVSSQVGCT 141
Query: 111 INCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLR------REKNIKINSQGKRQITNIVM 164
+ C FC TG Q VRNLT GEI+GQ+ + +L R + + R ITNIVM
Sbjct: 142 LTCSFCHTGTQKLVRNLTAGEILGQVMMARERLGDFPGGVRPTDGLVPHGESRAITNIVM 201
Query: 165 MGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLH 224
MGMGEPL NY++ AL + LS+R + LSTSG++P I+ E V LA+SLH
Sbjct: 202 MGMGEPLYNYENVKQALLIASDGEGLSLSKRRITLSTSGVVPQIEPTGSEIGVMLAISLH 261
Query: 225 ASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELIS 284
A ++LR+ LVPI+KK+PL+EL+ AC Y S ITFEY ML GIND+D A EL+
Sbjct: 262 AVRDDLRDVLVPINKKWPLEELLEACRTYPGVSNAKRITFEYVMLKGINDSDADARELVR 321
Query: 285 LMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINA 344
L+ K KINLIPFN +P SN +CS RI+ FA I+ +G +R RG DI A
Sbjct: 322 LLAK----IPAKINLIPFNPWPGSNYVCSDWDRIESFADIVNRAGYASPVRTPRGRDIFA 377
Query: 345 ACGQL 349
ACGQL
Sbjct: 378 ACGQL 382
>gi|386351421|ref|YP_006049669.1| hypothetical protein F11_17060 [Rhodospirillum rubrum F11]
gi|346719857|gb|AEO49872.1| hypothetical protein F11_17060 [Rhodospirillum rubrum F11]
Length = 364
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/339 (46%), Positives = 205/339 (60%), Gaps = 12/339 (3%)
Query: 19 LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRK 78
+GE PFRAKQL W++ G +DF+ MT L LR KL + + PH++ +Q S DGTRK
Sbjct: 1 MGEKPFRAKQLWHWVYHRGETDFSAMTTLGTPLRAKLAETCVVARPHVVREQRSEDGTRK 60
Query: 79 WIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 137
W+ N ETV+IPE +R LC+S+QVGC + C FC TG Q VRNLT EI+GQ
Sbjct: 61 WLLRFPDGNEAETVYIPEDDRGALCVSSQVGCTLTCRFCHTGTQLLVRNLTAHEIVGQ-- 118
Query: 138 VTEFKLRREKNIKINS--QGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
F R+ + S RQ++NIV+MGMGEPL NY + A+ ++L + +SRR
Sbjct: 119 ---FMAARDAYGEWPSPTDESRQLSNIVLMGMGEPLYNYDNVAKAIGILLDNEGIAVSRR 175
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
+ LSTSG++PMI + E V LAVSLHA+ + +R++++PI++KYPL EL+ AC Y
Sbjct: 176 RITLSTSGVVPMIRRCGAELGVNLAVSLHAARDEIRDEIMPINRKYPLAELMAACREYPG 235
Query: 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 315
S ITFEY ML G+ND++ A LI L+ CK NLIPFN +P S C
Sbjct: 236 ASNARRITFEYVMLKGVNDSEADARALIKLVEG----VPCKFNLIPFNPWPGSGFECPPI 291
Query: 316 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
I+ FA IL +G IR RG DI AACGQL L
Sbjct: 292 RHIERFANILFEAGYTAPIRMPRGRDILAACGQLRSDSL 330
>gi|349700300|ref|ZP_08901929.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter
europaeus LMG 18494]
Length = 414
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 220/350 (62%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ G +DF++M+ ++ L++KL +
Sbjct: 49 DLVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLAERFVVG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K ++ R ++ IV+MGMGEPL NY +
Sbjct: 169 TQALVRNLGAAEIVGQFMAARDSYGEWPSPKGDT--PRLLSTIVLMGMGEPLYNYDNVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ GLSRR + LSTSG++PM+D+ E + LAVSLHA ++LR+++VP+++
Sbjct: 227 AMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDEIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP+KE+I AC RY S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 287 KYPIKEVIAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S ++ FAKI+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSSYRPSTREQLDRFAKIVMDAGFASPIRMPRGRDILAACGQL 392
>gi|349686641|ref|ZP_08897783.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter
oboediens 174Bp2]
Length = 417
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 219/350 (62%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ G +DF++M+ ++ L++KL I
Sbjct: 49 DLVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLAERFVIG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K + R ++ IV+MGMGEPL NY +
Sbjct: 169 TQALVRNLGAAEIVGQFMAARDSYGEWPSPK--GETPRLLSTIVLMGMGEPLYNYDNVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ GLSRR + LSTSG++PM+D+ E + LAVSLHA ++LR+++VP+++
Sbjct: 227 AMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDEIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++E+I AC RY S ITFEY ML GIND++ A EL+ L+ K+NL
Sbjct: 287 KYPIREVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S ++ FAKI+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSSYRPSTREQLDRFAKIVMDAGFASPIRMPRGRDILAACGQL 392
>gi|87199457|ref|YP_496714.1| hypothetical protein Saro_1436 [Novosphingobium aromaticivorans DSM
12444]
gi|123749853|sp|Q2G8E3.1|RLMN_NOVAD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|87135138|gb|ABD25880.1| 23S rRNA m(2)A-2503 methyltransferase [Novosphingobium
aromaticivorans DSM 12444]
Length = 429
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 211/347 (60%), Gaps = 24/347 (6%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFH- 82
RAKQ+ W++ GV+DF+ MTD++ ++R L I P I+ Q+S DGTRKW+
Sbjct: 62 LRAKQVFHWLYHRGVTDFDAMTDIAKTMRPWLAERFVIGRPEIVEAQVSTDGTRKWLLRT 121
Query: 83 VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQL------ 136
K+ E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+
Sbjct: 122 ADKHDFEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTPGEIVGQVMLARDA 181
Query: 137 ---W-----------VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
W + E S G R +TNIVMMGMGEPL N+ + ALK
Sbjct: 182 LGEWPKGANDSRVATMAGLDFDDEDEGSYTSDG-RLLTNIVMMGMGEPLYNFDNVRDALK 240
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
L++ LS+R + LSTSG++PM+++ +E V LAVSLHA ++R+++VPI++KY
Sbjct: 241 LVMDGDGLALSKRRITLSTSGVVPMMERCGEEIGVNLAVSLHAVTKDVRDEIVPINRKYG 300
Query: 243 LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF 302
++EL+ AC Y S ITFEY ML ND+D HA EL+ L+R+ K+ K+NLIPF
Sbjct: 301 IEELLQACADYPGASNARRITFEYVMLKDKNDSDDHARELVRLIRQYKL--PAKVNLIPF 358
Query: 303 NCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
N +P + CS RIK FA I+ +GI +R RG DI+AACGQL
Sbjct: 359 NPWPGAPYECSSPDRIKSFANIVFEAGISAPVRTPRGRDIDAACGQL 405
>gi|403049734|ref|ZP_10904218.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 361
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 160/353 (45%), Positives = 222/353 (62%), Gaps = 16/353 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL S N+ +E+ E FRAKQL KWIH+ GV +F+ M+D + LR KL +I
Sbjct: 7 NLLGCSLETLENFFREINEPKFRAKQLLKWIHQKGVINFDDMSDFNKDLRHKLNTIAHIT 66
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I S +GT K++ + +++E V IPEK R TLCIS+Q GCA+ C FC+TG Q
Sbjct: 67 PPKIEEIHKSEEGTIKYLIKLTSGSMVEMVRIPEKKRITLCISSQAGCALQCTFCATGAQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF NL+ EIIGQ+W+ F + ++++TNIV MGMGEP+LN+K I +
Sbjct: 127 GFESNLSANEIIGQVWLANFY----------NSSQQKVTNIVFMGMGEPMLNFKPVIESA 176
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
K++ AY LSR+ + +STSGI P I++L+ E V LA+SLHA ++LR+K+VPI+KKY
Sbjct: 177 KIMKDQMAYSLSRKRITISTSGITPQINQLSSEIDVSLAISLHAPIDSLRDKIVPINKKY 236
Query: 242 PLKELILACHRYIT-YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
P+KELI +C +Y+ Y + IT EY ++ GIND+ A +L L+ SCKINLI
Sbjct: 237 PIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKKLARLLSD----VSCKINLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN F S+ S I+ F ILM+ G T+R RG+ ++ ACGQL GK+
Sbjct: 293 PFNPFEGSSYKRSSQKNIEQFKSILMSKGFITTLRVTRGDAVDGACGQLVGKL 345
>gi|393720492|ref|ZP_10340419.1| radical SAM protein [Sphingomonas echinoides ATCC 14820]
Length = 394
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 210/328 (64%), Gaps = 9/328 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RAKQL WI+ GV+DF MTD+S +++ L+ I P ++ Q+S DGTRKW+
Sbjct: 50 LRAKQLWHWIYNRGVTDFALMTDISKAMQPWLEQRFTISRPQVVEAQVSTDGTRKWLLRT 109
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+
Sbjct: 110 DDGNDYEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTPGEIVGQV-----M 164
Query: 143 LRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
L R+ + SQ + R +TNIVMMGMGEPL N+ + LK+++ GLSRR + LST
Sbjct: 165 LARDALGEWPSQPEGRMLTNIVMMGMGEPLYNFDNVRDGLKIVMDGDGIGLSRRRITLST 224
Query: 202 SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261
SG++P++ + +E V LAVSLHA N +R+++VPI++KY L++++ AC Y +
Sbjct: 225 SGVVPLMARAGEEISVNLAVSLHAVTNEIRDEIVPINRKYKLEQVLQACADYPGANNARR 284
Query: 262 ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIF 321
ITFEY ML ND+D A EL+ L++K + K+NLIPFN +P + CS RIK F
Sbjct: 285 ITFEYVMLKDKNDSDADARELVRLLKKYDL--PAKVNLIPFNPWPGAPYECSTPERIKAF 342
Query: 322 AKILMNSGIFVTIRKIRGNDINAACGQL 349
+ I+ ++GI +R RG DI+AACGQL
Sbjct: 343 SNIVFDAGISAPVRTPRGRDIDAACGQL 370
>gi|192288832|ref|YP_001989437.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
gi|254807199|sp|B3Q9D7.1|RLMN_RHOPT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|192282581|gb|ACE98961.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris TIE-1]
Length = 399
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 221/358 (61%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ++G P RA+QL W++ G DF++MT++S +R L
Sbjct: 25 SLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRATLAEH 84
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 85 FTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGCTL 144
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R ITNIVMMGMGEPL
Sbjct: 145 NCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWID-RETPNGNRLITNIVMMGMGEPL 203
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + E V LA+SLHA + LR
Sbjct: 204 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELR 263
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
++LVP+++KYPLKEL+ AC Y S ITFEY ML G+ND+ A +L+ L++
Sbjct: 264 DELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQLLKG--- 320
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P SN CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 321 -IPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 377
>gi|347759882|ref|YP_004867443.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter xylinus
NBRC 3288]
gi|347578852|dbj|BAK83073.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter xylinus
NBRC 3288]
Length = 412
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 220/350 (62%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ G +DF++M+ ++ L++KL +
Sbjct: 48 DLVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLAERFVVG 107
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 108 RPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHTG 167
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K ++ R ++ IV+MGMGEPL NY +
Sbjct: 168 TQALVRNLGAAEIVGQFMAARDSYGEWPSPKGDT--PRLLSTIVLMGMGEPLYNYDNVAK 225
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ GLSRR + LSTSG++PM+D+ E + LAVSLHA ++LR+++VP+++
Sbjct: 226 AMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDEIVPLNR 285
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP+KE+I AC RY S ITFEY ML GIND++ A EL+ L+ K+NL
Sbjct: 286 KYPIKEVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISG----IPAKVNL 341
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S +++ FA I+M++G IR RG DI AACGQL
Sbjct: 342 IPFNPWPGSSYRPSTREQLEKFANIVMDAGFASPIRMPRGRDILAACGQL 391
>gi|205829897|sp|Q6NCS3.2|RLMN_RHOPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 399
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 221/358 (61%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ++G P RA+QL W++ G DF++MT++S +R L
Sbjct: 25 SLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLAEH 84
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 85 FTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGCTL 144
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R ITNIVMMGMGEPL
Sbjct: 145 NCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWID-RETPNGNRLITNIVMMGMGEPL 203
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + E V LA+SLHA + LR
Sbjct: 204 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELR 263
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
++LVP+++KYPLKEL+ AC Y S ITFEY ML G+ND+ A +L+ L++
Sbjct: 264 DELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQLLKG--- 320
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P SN CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 321 -IPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 377
>gi|452751805|ref|ZP_21951550.1| Ribosomal RNA large subunit methyltransferase N [alpha
proteobacterium JLT2015]
gi|451961024|gb|EMD83435.1| Ribosomal RNA large subunit methyltransferase N [alpha
proteobacterium JLT2015]
Length = 399
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/328 (46%), Positives = 206/328 (62%), Gaps = 4/328 (1%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R KQL WI+ G SDF +MTD++ R+ L I P + +S DGTRKW+
Sbjct: 50 MRTKQLWHWIYLRGKSDFAEMTDIAKMHRELLAKLFVIARPEVTQALVSEDGTRKWLLKT 109
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI GQ+ +
Sbjct: 110 DDGNEYEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMKLVRNLTAGEIAGQIMLARDA 169
Query: 143 LRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
L + G+ R +TNIVMMGMGEPL N+ + GAL L++ + GLSRR + LST
Sbjct: 170 LGEWPKPGEDLTGEARMLTNIVMMGMGEPLYNFDNVKGALLLVMDETGLGLSRRRITLST 229
Query: 202 SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261
SG++PM+ + +E V LAVSLHA N R+++VP++KKY ++EL+ AC Y S
Sbjct: 230 SGVVPMMQRCGEELGVNLAVSLHAVNKETRDEIVPLNKKYGIEELLQACADYPGASNARR 289
Query: 262 ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIF 321
ITFEY ML +ND+D A EL+ L+++ K+ K+NLIPFN +P SN CS RI+ F
Sbjct: 290 ITFEYVMLKDVNDSDEDARELVRLIKRYKL--PAKVNLIPFNPWPGSNYECSHPKRIQAF 347
Query: 322 AKILMNSGIFVTIRKIRGNDINAACGQL 349
+KI+ ++GI +R RG DI AACGQL
Sbjct: 348 SKIVFDAGISAPVRTPRGRDIMAACGQL 375
>gi|39933473|ref|NP_945749.1| hypothetical protein RPA0396 [Rhodopseudomonas palustris CGA009]
gi|39647319|emb|CAE25840.1| Cfr family protein [Rhodopseudomonas palustris CGA009]
Length = 424
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/358 (43%), Positives = 221/358 (61%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ++G P RA+QL W++ G DF++MT++S +R L
Sbjct: 50 SLIGLSRAQLCDRLGDVGVAPPQRKMRAQQLWHWMYVRGARDFSEMTNVSKEMRAMLAEH 109
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 110 FTVDRPEVVAEQISADGTRKWLLRLPSGGDGQKAHEVECVYIPETDRGTLCVSSQVGCTL 169
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R ITNIVMMGMGEPL
Sbjct: 170 NCAFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWID-RETPNGNRLITNIVMMGMGEPL 228
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + E V LA+SLHA + LR
Sbjct: 229 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRTGDEIGVMLAISLHAVRDELR 288
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
++LVP+++KYPLKEL+ AC Y S ITFEY ML G+ND+ A +L+ L++
Sbjct: 289 DELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARKLVQLLKG--- 345
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P SN CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 346 -IPAKINLIPFNPWPGSNYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 402
>gi|91975189|ref|YP_567848.1| hypothetical protein RPD_0709 [Rhodopseudomonas palustris BisB5]
gi|123763075|sp|Q13D92.1|RLMN_RHOPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91681645|gb|ABE37947.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 398
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 222/361 (61%), Gaps = 16/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + +G P RA+QL W++ G DF++MT++S +R +L +
Sbjct: 24 SLIGLSRAELAERLGHIGVAPAQRKMRAQQLWNWMYLRGARDFSEMTNVSKEMRAQLSDH 83
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 84 FTVDRPEVVAEQISNDGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGCTL 143
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEIIGQ+ V +L + + G R +TNIVMMGMGEPL
Sbjct: 144 NCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWVD-RETPNGNRLVTNIVMMGMGEPL 202
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+++ AL ++ + G+SRR V LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 203 YNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIIRTGEEIGVMLAISLHAVRDELR 262
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
++LVP+++KYPLKEL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 263 DELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQLLKG--- 319
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 320 -IPAKINLIPFNPWPGSAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQLKS 378
Query: 352 K 352
+
Sbjct: 379 E 379
>gi|381159927|ref|ZP_09869159.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
gi|380877991|gb|EIC20083.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
Length = 368
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 215/353 (60%), Gaps = 22/353 (6%)
Query: 7 LSPLKF-VNYCKEL----GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
++PL+ + C++L G F + L KW+HK GV DF+ MTDL ++R+ L
Sbjct: 12 VNPLELDLKGCEQLAIAHGGKAFHGRNLFKWVHKHGVLDFDLMTDLPAAMRQSLALRCPC 71
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P I +Q + DGT KWI + +ETVFIPE R TLC+S+QVGCA++C FC+T R
Sbjct: 72 ELPRIALEQPAPDGTVKWILELGDGQRVETVFIPEGKRRTLCVSSQVGCALDCRFCATAR 131
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
+GF RNLT GEIIGQ+W R + TN+V+MGMGEPL N+ + + A
Sbjct: 132 EGFSRNLTPGEIIGQVWAAT----RRTGLAP--------TNVVLMGMGEPLANFDAVVQA 179
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+ ++ D AY L++ V LSTSG++P I +L + V LAVSLHA +N LR++LVPI++K
Sbjct: 180 MAVMQHDLAYMLAKTRVTLSTSGLVPNIYRLKEVADVSLAVSLHAPDNALRDELVPINRK 239
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+ELI AC Y R IT+EY ML G+ND+ HA LI L+ K+NLI
Sbjct: 240 YPLEELIPACKAYAGSDKRRRITWEYVMLDGVNDSLAHAKALIRLLEG----VPSKVNLI 295
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN F S S R+ F L+ +G+ T RK RG+ I AACGQL G++
Sbjct: 296 PFNPFAGSGFATSPPERVDAFRLRLIGAGLVTTTRKTRGDGIAAACGQLVGRV 348
>gi|326387224|ref|ZP_08208834.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
19370]
gi|326208405|gb|EGD59212.1| hypothetical protein Y88_1274 [Novosphingobium nitrogenifigens DSM
19370]
Length = 421
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 154/345 (44%), Positives = 211/345 (61%), Gaps = 21/345 (6%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RAKQ+ WI+ GV+DF+ MTD++ ++R L I P I++ Q S DGTRKW+
Sbjct: 55 LRAKQVFHWIYHRGVTDFDAMTDIAKTMRPWLSERFVIDRPSIVTAQASSDGTRKWLLRT 114
Query: 84 KKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+ +
Sbjct: 115 ADNHDFEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTPGEIVGQVMLARDA 174
Query: 143 LRR-----------EKNIKINSQGK-------RQITNIVMMGMGEPLLNYKSTIGALKLI 184
L +++ + + +G R +TNIVMMGMGEPL N+ + ALK++
Sbjct: 175 LGEWPKGGGTMAGLDEDPEDDPEGAQAYTADGRLLTNIVMMGMGEPLYNFDNVRDALKIV 234
Query: 185 LSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLK 244
+ LS+R + LSTSG++PM+D+ E V LAVSLHA +R+++VPI++KY L+
Sbjct: 235 MDGDGLALSKRRITLSTSGVVPMMDRCGDEIGVNLAVSLHAVTKEVRDEIVPINRKYGLE 294
Query: 245 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNC 304
EL+ AC Y S ITFEY ML ND+D A EL+ L+RK K+ K+NLIPFN
Sbjct: 295 ELLSACAAYPGASNARRITFEYVMLKDKNDSDEDARELVRLIRKYKL--PAKVNLIPFNP 352
Query: 305 FPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+P + CS RIK F+ I+ +GI +R RG DI+AACGQL
Sbjct: 353 WPGAPYECSTPERIKRFSDIVFEAGISAPVRTPRGRDIDAACGQL 397
>gi|297519092|ref|ZP_06937478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
OP50]
Length = 330
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/322 (47%), Positives = 210/322 (65%), Gaps = 13/322 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIF 321
IP+N FP + S NSRI F
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRF 330
>gi|326405176|ref|YP_004285258.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
multivorum AIU301]
gi|338986497|ref|ZP_08633530.1| Ribosomal RNA large subunit methyltransferase N [Acidiphilium sp.
PM]
gi|325052038|dbj|BAJ82376.1| ribosomal RNA large subunit methyltransferase N [Acidiphilium
multivorum AIU301]
gi|338206586|gb|EGO94689.1| Ribosomal RNA large subunit methyltransferase N [Acidiphilium sp.
PM]
Length = 394
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 215/354 (60%), Gaps = 9/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + E+GE PFRAKQL WI+ GV+DF M +++ LR KL I
Sbjct: 43 DLVGLSREELAAAMAEIGEQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLAERFAIG 102
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPE--KNRNTLCISTQVGCAINCIFCSTG 119
P + +D +S D TRK +F + + +ETV+IP+ ++R +C+S+QVGC ++C FC TG
Sbjct: 103 RPEVAADHLSADETRKMLFRFRDHEAVETVYIPDVTEDRGAVCLSSQVGCTLSCRFCHTG 162
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q RNL+ EI+GQ + K + R ++ IV+MGMGEPL NY++
Sbjct: 163 TQRLTRNLSAAEIVGQFMAMRDAYGEWPSPK--GETPRLLSTIVLMGMGEPLYNYENVAK 220
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+++ GLSRR + LSTSG++PM+D+ E V LAVSLHA +++R+ +VP+++
Sbjct: 221 AMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHAVTDDVRDVIVPLNR 280
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KY + ELI AC RY S ITFEY ML GIND++ A L+ L+ K+NL
Sbjct: 281 KYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVELIDG----IPAKVNL 336
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S + I+ FA I+M++G +R RG DI AACGQL K+
Sbjct: 337 IPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACGQLKSKV 390
>gi|330994687|ref|ZP_08318610.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
gi|329758328|gb|EGG74849.1| Ribosomal RNA large subunit methyltransferase N [Gluconacetobacter
sp. SXCC-1]
Length = 412
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 220/350 (62%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ G +DF++M+ ++ L++KL +
Sbjct: 48 DLVGLSREELTDIMVEIGEKPFRTKQLWHWIYHQGATDFSRMSSIARPLQEKLAERFVVG 107
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 108 RPGVVTEQTSQDSTRKFLFRFRDGQEAETVYIPDRQEDRGAVCISSQVGCTLSCTFCHTG 167
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K ++ R ++ IV+MGMGEPL NY +
Sbjct: 168 TQALVRNLGAAEIVGQFMAARDSYGEWPSPKGDT--PRLLSTIVLMGMGEPLYNYDNVAK 225
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ GLSRR + LSTSG++PM+D+ E + LAVSLHA ++LR+++VP+++
Sbjct: 226 AMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAELGINLAVSLHAVRDDLRDEIVPLNR 285
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++++I AC RY S ITFEY ML GIND++ A EL+ L+ K+NL
Sbjct: 286 KYPIRDVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISG----IPAKVNL 341
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S +++ FA I+M++G IR RG DI AACGQL
Sbjct: 342 IPFNPWPGSSYRPSTREQLERFANIVMDAGFASPIRMPRGRDILAACGQL 391
>gi|148261683|ref|YP_001235810.1| radical SAM protein [Acidiphilium cryptum JF-5]
gi|205829703|sp|A5G209.1|RLMN_ACICJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146403364|gb|ABQ31891.1| 23S rRNA m(2)A-2503 methyltransferase [Acidiphilium cryptum JF-5]
Length = 390
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 215/354 (60%), Gaps = 9/354 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + E+GE PFRAKQL WI+ GV+DF M +++ LR KL I
Sbjct: 39 DLVGLSREELAAAMAEIGEQPFRAKQLWHWIYHQGVTDFAAMANIAKPLRAKLAERFAIG 98
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPE--KNRNTLCISTQVGCAINCIFCSTG 119
P + +D +S D TRK +F + + +ETV+IP+ ++R +C+S+QVGC ++C FC TG
Sbjct: 99 RPEVAADHLSADETRKMLFRFRDHEAVETVYIPDVTEDRGAVCLSSQVGCTLSCRFCHTG 158
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q RNL+ EI+GQ + K + R ++ IV+MGMGEPL NY++
Sbjct: 159 TQRLTRNLSAAEIVGQFMAMRDAYGEWPSPK--GETPRLLSTIVLMGMGEPLYNYENVAK 216
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+++ GLSRR + LSTSG++PM+D+ E V LAVSLHA +++R+ +VP+++
Sbjct: 217 AMKIVMDGEGIGLSRRRITLSTSGVVPMMDRAGAELGVNLAVSLHAVTDDVRDVIVPLNR 276
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KY + ELI AC RY S ITFEY ML GIND++ A L+ L+ K+NL
Sbjct: 277 KYNIAELIAACRRYPGASNARRITFEYVMLKGINDSEADARRLVELIDG----IPAKVNL 332
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S + I+ FA I+M++G +R RG DI AACGQL K+
Sbjct: 333 IPFNPWPGSTYETSSGNAIRRFANIVMDAGYAAPVRTPRGQDILAACGQLKSKV 386
>gi|58038729|ref|YP_190693.1| Fe-S-cluster redox protein [Gluconobacter oxydans 621H]
gi|81352583|sp|Q5FUA9.1|RLMN_GLUOX RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H]
Length = 407
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 151/353 (42%), Positives = 216/353 (61%), Gaps = 15/353 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + E+GE PFRAKQL WI+ G +DF+ MT ++ ++ KL +
Sbjct: 49 DLVGLSREELAALMTEIGEKPFRAKQLWHWIYHQGATDFSAMTTIAKPMQAKLAEHFVVS 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPTTATEQTSVDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK---RQITNIVMMGMGEPLLNYKS 176
Q VRNL EI+GQ F R+ + S R ++ IV+MGMGEPL NY++
Sbjct: 169 TQKLVRNLGPAEIVGQ-----FMAARDSYGEWPSPSADMPRYLSTIVLMGMGEPLYNYEN 223
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
A+++I+ LSRR + LSTSG++PM+D+ E + LA+SLHA N LR+++VP
Sbjct: 224 VAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQIVP 283
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYP++ELI AC RY S ITFEY ML G+ND++ A EL+ L+R K
Sbjct: 284 LNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIRD----LPAK 339
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+NLIPFN +P S+ S ++ FA I+M++G IR RG DI AACGQL
Sbjct: 340 VNLIPFNPWPGSDFQPSTRQQLTKFANIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|414343116|ref|YP_006984637.1| Fe-S-cluster redox protein [Gluconobacter oxydans H24]
gi|411028451|gb|AFW01706.1| Fe-S-cluster redox protein [Gluconobacter oxydans H24]
Length = 403
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 216/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ +S + E+GE PFRAKQ+ WI+ G +DF+KM+ ++ L+ KL +
Sbjct: 49 DLVGMSREELATLMTEIGEKPFRAKQIWHWIYHQGATDFSKMSTIAKPLQAKLAEHFIVG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPTTTTEQTSVDATRKFLFRFRDGQEAETVYIPDRKEDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + + + R ++ IV+MGMGEPL NY +
Sbjct: 169 TQKLVRNLGPAEIVGQFMAARDSYKEWPSPSADM--PRFLSTIVLMGMGEPLYNYDNVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ LSRR + LSTSG++PM+D+ +E + LA+SLHA N LR+++VP+++
Sbjct: 227 AMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGEELGINLAISLHAVTNELRDQIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++EL+ AC RY S ITFEY ML G+ND++ A EL+ L++ K+NL
Sbjct: 287 KYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIKD----MPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S ++ FAKI+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDFKPSTREQLAKFAKIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|410943443|ref|ZP_11375184.1| Fe-S-cluster redox protein [Gluconobacter frateurii NBRC 101659]
Length = 403
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 217/350 (62%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ +S + E+GE PFRAKQ+ WI+ G +DF+KM+ ++ L+ KL +
Sbjct: 49 DLVGMSREELATLMTEIGEKPFRAKQIWHWIYHQGATDFSKMSTIAKPLQAKLAEHFIVG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPTTTTEQTSVDATRKFLFRFRDGQEAETVYIPDRKEDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + + ++ R ++ IV+MGMGEPL NY +
Sbjct: 169 TQKLVRNLGPAEIVGQFMAARDSYKEWPSP--SADMPRFLSTIVLMGMGEPLYNYDNVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ LSRR + LSTSG++PM+D+ E + LA+SLHA N+LR+++VP+++
Sbjct: 227 AMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNDLRDQIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++EL+ AC RY S ITFEY ML G+ND++ A EL+ L++ K+NL
Sbjct: 287 KYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIKD----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S ++ FAKI+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDFKPSTREQLAKFAKIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|347759028|ref|YP_004866590.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13]
gi|347591546|gb|AEP10588.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13]
Length = 378
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 160/355 (45%), Positives = 217/355 (61%), Gaps = 13/355 (3%)
Query: 4 LLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKA 63
L+ L+ + + +E G FRAKQ+ W++ GV+DF MT+L LR L I+
Sbjct: 23 LIGLTLPEMIAALEEHGLPKFRAKQVWHWVYHRGVTDFEAMTNLPRDLRDTLIEKFSIER 82
Query: 64 PHIMSDQISFDGTRKWIF-HVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
P +M++Q S DGT KW+ IE VFIPE +R TLC+S+QVGC + C FC TG Q
Sbjct: 83 PGVMTEQKSTDGTMKWLLVMADGQQIEMVFIPEADRGTLCVSSQVGCTLTCRFCHTGTQP 142
Query: 123 FVRNLTVGEIIGQLW-----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
VRNL EI+ Q+ + E+ + EK K +QG R +TNIV+MGMGEPL NY +
Sbjct: 143 LVRNLGPHEILQQIMYARDVLGEWPVAGEK--KDANQG-RDLTNIVLMGMGEPLYNYANV 199
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
A+++ + + G+S+R + LSTSG++P I + +E V LA+SLHA N+ +R++++PI
Sbjct: 200 AKAMQICMDEDGLGISKRRITLSTSGVVPQIVQCGEELNVNLAISLHAPNDAVRSEIMPI 259
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+ KYPL EL+ AC Y S ITFEY ML +ND+D A EL L+R CK+
Sbjct: 260 NNKYPLAELLDACRNYPGLSDNRRITFEYVMLKDVNDSDDQARELAQLLRG----IPCKV 315
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
NLIPFN +PNS CS +RI FA+IL G IRK RG DI AACGQL +
Sbjct: 316 NLIPFNPWPNSPYECSSGNRIHAFARILNGEGYDAPIRKTRGQDILAACGQLKSE 370
>gi|323136337|ref|ZP_08071419.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
gi|322398411|gb|EFY00931.1| radical SAM enzyme, Cfr family [Methylocystis sp. ATCC 49242]
Length = 392
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 209/343 (60%), Gaps = 18/343 (5%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
E+ R QL WI+ G DF +M ++S SLR L + ++ P I+ +Q+S DGTRKW+
Sbjct: 38 EIRMRVSQLWHWIYFRGARDFGEMLNISKSLRLTLDGAFGLRHPEIVEEQVSVDGTRKWL 97
Query: 81 FHV-------KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
+ K +E V+IPE +R TLC+S+QVGC +NC FC TG Q VRNLT EII
Sbjct: 98 LRLAPVDAQDKGAEVECVYIPESDRGTLCVSSQVGCTLNCSFCHTGTQKLVRNLTSAEII 157
Query: 134 GQLWVTEFKL-------RREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILS 186
GQL V +L R + + +G R ++NIV MGMGEPL N + + A++++
Sbjct: 158 GQLLVARQRLGDFPDRERPTDGLVPSGEGVRAVSNIVFMGMGEPLYNIDNVMAAIEVMAD 217
Query: 187 DHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKEL 246
LS+R + +STSG++P I++L EC LA+SLHA ++LRN+LVP+++KYP+KEL
Sbjct: 218 GDGLSLSKRRITVSTSGVVPQIERLGAECGPALAISLHAVRDDLRNELVPLNRKYPIKEL 277
Query: 247 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP 306
+ AC Y S ITFEY ML G+ND+ A EL+ L++ KINLIPFN +P
Sbjct: 278 LQACRDYPGASNARRITFEYVMLKGVNDSPAEARELVRLLKG----VPAKINLIPFNPWP 333
Query: 307 NSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+ CS I+ F+ I+ N+G +R RG DI AACGQL
Sbjct: 334 GAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAACGQL 376
>gi|427430954|ref|ZP_18920650.1| Ribosomal RNA large subunit methyltransferase N [Caenispirillum
salinarum AK4]
gi|425878131|gb|EKV26850.1| Ribosomal RNA large subunit methyltransferase N [Caenispirillum
salinarum AK4]
Length = 421
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 213/353 (60%), Gaps = 10/353 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + ELGE PFR KQ+ +WI+ GV+DF+ MT+LS LR+KL I+
Sbjct: 55 DLVGLSREELGAAMAELGEKPFRVKQVWQWIYNKGVTDFDSMTNLSKPLREKLDAHFVIR 114
Query: 63 APHIMSDQISFDGTRKWIFH-VKKNIIETVFIPE--KNRNTLCISTQVGCAINCIFCSTG 119
P + +Q S DGTRKW+ ETV+IP+ + R ++CIS+QVGC + C FC TG
Sbjct: 115 RPSLPVEQTSEDGTRKWLMRFADGKEAETVYIPDVDEPRGSVCISSQVGCTLTCKFCHTG 174
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL+ EI+ Q V + S R+++NIVMMGMGEPL NY + +
Sbjct: 175 TQLLVRNLSAAEIVSQFMVARDSYGEWPSPTDES---RRLSNIVMMGMGEPLYNYDNVVK 231
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALK+++ LSRR + LSTSG++P + +L + V LAVSLHA+ + +RN+++PI+K
Sbjct: 232 ALKILVDGDGIALSRRRITLSTSGVVPEMYRLGNDINVNLAVSLHAATDEIRNRIMPINK 291
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC Y S ITFEY ML +ND+D A L L+ CK NL
Sbjct: 292 KYPLAELMKACREYPNVSNARRITFEYVMLKDVNDSDADARALAKLVEG----IPCKFNL 347
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
IPFN +P S CS +RI+ F+ +L + G IR RG DI AACGQL +
Sbjct: 348 IPFNPWPGSQFECSSWNRIRKFSDLLYDLGFSAPIRMPRGRDILAACGQLKSE 400
>gi|453330449|dbj|GAC87677.1| Fe-S-cluster redox protein [Gluconobacter thailandicus NBRC 3255]
Length = 403
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 215/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ +S + E+GE PFRAKQ+ WI+ G +DF+KM+ ++ L+ KL +
Sbjct: 49 DLVGMSREELATLMTEIGEKPFRAKQIWHWIYHQGATDFSKMSTIAKPLQAKLAEHFIVG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P ++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPTTTTEQTSVDATRKFLFRFRDGQEAETVYIPDRKEDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + + + R ++ IV+MGMGEPL NY +
Sbjct: 169 TQKLVRNLGPAEIVGQFMAARDSYKEWPSPSADM--PRFLSTIVLMGMGEPLYNYDNVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ LSRR + LSTSG++PM+D+ E + LA+SLHA N LR+++VP+++
Sbjct: 227 AMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDELGINLAISLHAVTNELRDQIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++EL+ AC RY S ITFEY ML G+ND++ A EL+ L++ K+NL
Sbjct: 287 KYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRLIKD----MPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S ++ FAKI+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDFKPSTREQLAKFAKIVMDAGFASPIRTPRGQDILAACGQL 392
>gi|86747220|ref|YP_483716.1| hypothetical protein RPB_0093 [Rhodopseudomonas palustris HaA2]
gi|123293381|sp|Q2J405.1|RLMN_RHOP2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|86570248|gb|ABD04805.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 399
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/361 (42%), Positives = 218/361 (60%), Gaps = 16/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + +G P RA+QL W++ G DF +MT++S +R L
Sbjct: 25 SLIGLSRAELAERLGAIGVAPAQRKMRAQQLWHWMYVRGARDFAEMTNVSKEMRATLAEH 84
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 85 CTVDRPEVVAEQISADGTRKWLLRLPSGDDVQKAHEVECVYIPETDRGTLCVSSQVGCTL 144
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R +TN+VMMGMGEPL
Sbjct: 145 NCSFCHTGTQRLVRNLTAGEIVGQVMVARDRLGDWID-RETPNGNRLVTNVVMMGMGEPL 203
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+++ AL ++ + G+SRR V LSTSG++P I + E V LA+SLHA + LR
Sbjct: 204 YNFEAVRDALLIVTDNEGIGISRRRVTLSTSGVVPNIARTGDEIGVMLAISLHAVRDELR 263
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
++LVP+++KYPLKEL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 264 DELVPLNRKYPLKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARRLVQLLKG--- 320
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 321 -IPAKINLIPFNPWPGSKYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQLKS 379
Query: 352 K 352
+
Sbjct: 380 E 380
>gi|115522068|ref|YP_778979.1| radical SAM protein [Rhodopseudomonas palustris BisA53]
gi|122298191|sp|Q07VN5.1|RLMN_RHOP5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|115516015|gb|ABJ03999.1| radical SAM enzyme, Cfr family [Rhodopseudomonas palustris BisA53]
Length = 403
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 210/337 (62%), Gaps = 15/337 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RA+QL WI+ G +DF +MT +S LR +L + P ++++QIS DGTRKW+ +
Sbjct: 49 MRAQQLWHWIYVRGATDFAQMTSISKELRAQLAEHFTVDRPEVVTEQISNDGTRKWLLRL 108
Query: 84 -------KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQL 136
+ + +E V+IPE +R TLC+S+QVGC +NC FC TG Q VRNLT GEI+GQ+
Sbjct: 109 PSGQAGERAHEVECVYIPETDRGTLCVSSQVGCTLNCSFCHTGTQKLVRNLTAGEIVGQV 168
Query: 137 WVTEFKLRREKNIKINSQGK----RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
V + +L ++Q R ITN+VMMGMGEPL N+++ AL ++ + GL
Sbjct: 169 MVAKDRLGDWPMAVASTQDAGENNRLITNVVMMGMGEPLYNFEAVRDALLIVSDNEGIGL 228
Query: 193 SRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252
SRR + LSTSG++P I + E V LA+SLHA + LRN+LVP++KKYPLKEL+ AC
Sbjct: 229 SRRRITLSTSGVVPNIFRTGDEIGVMLAISLHAVRDELRNELVPLNKKYPLKELLQACRD 288
Query: 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
Y S ITFEY ML G+ND+ A L+ L++ KINLIPFN +P S C
Sbjct: 289 YPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG----VPAKINLIPFNPWPGSAYQC 344
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
S +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 345 SDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 381
>gi|407781692|ref|ZP_11128909.1| radical SAM enzyme [Oceanibaculum indicum P24]
gi|407207318|gb|EKE77255.1| radical SAM enzyme [Oceanibaculum indicum P24]
Length = 383
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/327 (46%), Positives = 203/327 (62%), Gaps = 9/327 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
FR KQ+ W++ GV+DF MT+++ LR KL I+ P ++++Q S DGT KW+
Sbjct: 49 FRMKQVWNWVYHRGVTDFEAMTNIAKDLRGKLAEQFRIERPQVVTEQKSTDGTIKWLLRF 108
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ N +ETVFIPE++R TLC+S+QVGC + C FC TG Q +VRNL EI+GQ+ + K
Sbjct: 109 EDGNEVETVFIPEEDRGTLCVSSQVGCTLTCKFCHTGTQRWVRNLGAPEIVGQVMLARDK 168
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L S R TNIVMMGMGEPL NY + ALK+I+ LSRR + LST+
Sbjct: 169 LGEWPA----SMEGRNFTNIVMMGMGEPLYNYDNVAKALKIIMDGEGIALSRRKITLSTA 224
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++P + K +E V LAVSLHA + +R+ +VP+++KY L ELI AC Y S I
Sbjct: 225 GVVPAMAKCGEELGVNLAVSLHAVTDEIRDVIVPLNRKYKLAELIQACRDYPGASNARRI 284
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML G+ND+D A L+ L+ K+NLIPFN +P S S N+RI F+
Sbjct: 285 TFEYVMLKGVNDSDEDAHALVKLLEG----IPAKMNLIPFNPWPGSPFERSSNTRIDKFS 340
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
KILM +G +R RG DI AACGQL
Sbjct: 341 KILMAAGYASPVRTTRGADIMAACGQL 367
>gi|402771059|ref|YP_006590596.1| ribosomal RNA large subunit methyltransferase N [Methylocystis sp.
SC2]
gi|401773079|emb|CCJ05945.1| Ribosomal RNA large subunit methyltransferase N [Methylocystis sp.
SC2]
Length = 396
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/343 (42%), Positives = 210/343 (61%), Gaps = 18/343 (5%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
E+ R Q+ W++ G DF +M ++S ++R +L ++ ++ P I+ +QIS DGTRKW+
Sbjct: 39 EIRMRVSQIWHWVYFRGARDFGEMLNVSKAMRTQLADAFALRLPEIVEEQISVDGTRKWL 98
Query: 81 FHV-------KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
+ K +E V+IPE +R TLC+S+QVGC +NC FC TG Q VRNLT EI+
Sbjct: 99 LRLQPVDAFDKGAEVECVYIPESDRGTLCVSSQVGCTLNCSFCHTGTQRLVRNLTSAEIV 158
Query: 134 GQLWVTEFKL-------RREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILS 186
GQL V +L R + + +G R ++NIV MGMGEPL N + + A++++
Sbjct: 159 GQLLVARRRLGDFPGRERPTDGLVPSGEGVRAVSNIVFMGMGEPLYNLDNVMAAVEIMAD 218
Query: 187 DHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKEL 246
LS+R + +STSG++P I++L EC LA+SLHA + LRN+LVP+++KYP+KEL
Sbjct: 219 GDGLALSKRRITVSTSGVVPQIERLGAECGPALAISLHAVRDGLRNELVPLNRKYPIKEL 278
Query: 247 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP 306
+ AC Y S ITFEY ML G+ND+ A EL+ L++ KINLIPFN +P
Sbjct: 279 LQACRDYPGASNARRITFEYVMLKGVNDSPADAKELVRLLKG----LPAKINLIPFNPWP 334
Query: 307 NSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+ CS I+ F+ I+ N+G +R RG DI AACGQL
Sbjct: 335 GAPYECSDWETIERFSDIVFNAGYASPVRTPRGRDILAACGQL 377
>gi|404255289|ref|ZP_10959257.1| radical SAM protein [Sphingomonas sp. PAMC 26621]
Length = 383
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 209/328 (63%), Gaps = 9/328 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RAKQL WI+ GV+DF+ MTD+S +++ L+ I P ++ Q+S DGTRKW+
Sbjct: 39 LRAKQLWHWIYNRGVTDFSLMTDISKTMQPWLEQRFTISRPQVVEAQVSTDGTRKWLLRT 98
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT EI+GQ+
Sbjct: 99 DDGNDYEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTPSEIVGQV-----M 153
Query: 143 LRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
L R+ + SQ + R +TNIVMMGMGEPL N+ + LK+++ GLSRR + LST
Sbjct: 154 LARDALGEWPSQPEGRMLTNIVMMGMGEPLYNFDNVRDGLKIVMDGDGIGLSRRRITLST 213
Query: 202 SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261
SG++P++ + +E V LAVSLHA N +R+++VPI++KY L++++ AC Y +
Sbjct: 214 SGVVPLMARAGEEISVNLAVSLHAVTNEIRDEIVPINRKYKLEQVLQACADYPGANNARR 273
Query: 262 ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIF 321
ITFEY ML ND+D A EL+ L++ + K+NLIPFN +P + CS RIK F
Sbjct: 274 ITFEYVMLKDKNDSDADARELVRLLKLYDL--PAKVNLIPFNPWPGAPYECSTPERIKAF 331
Query: 322 AKILMNSGIFVTIRKIRGNDINAACGQL 349
+ I+ ++GI +R RG DI+AACGQL
Sbjct: 332 SNIVFDAGISAPVRTPRGRDIDAACGQL 359
>gi|395491425|ref|ZP_10423004.1| radical SAM protein [Sphingomonas sp. PAMC 26617]
Length = 379
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 209/328 (63%), Gaps = 9/328 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RAKQL WI+ GV+DF+ MTD+S +++ L+ I P ++ Q+S DGTRKW+
Sbjct: 35 LRAKQLWHWIYNRGVTDFSLMTDISKTMQPWLEQRFTISRPQVVEAQVSTDGTRKWLLRT 94
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT EI+GQ+
Sbjct: 95 DDGNDYEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTPSEIVGQV-----M 149
Query: 143 LRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
L R+ + SQ + R +TNIVMMGMGEPL N+ + LK+++ GLSRR + LST
Sbjct: 150 LARDALGEWPSQPEGRMLTNIVMMGMGEPLYNFDNVRDGLKIVMDGDGIGLSRRRITLST 209
Query: 202 SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261
SG++P++ + +E V LAVSLHA N +R+++VPI++KY L++++ AC Y +
Sbjct: 210 SGVVPLMARAGEEISVNLAVSLHAVTNEIRDEIVPINRKYKLEQVLQACADYPGANNARR 269
Query: 262 ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIF 321
ITFEY ML ND+D A EL+ L++ + K+NLIPFN +P + CS RIK F
Sbjct: 270 ITFEYVMLKDKNDSDADARELVRLLKLYDL--PAKVNLIPFNPWPGAPYECSTPERIKAF 327
Query: 322 AKILMNSGIFVTIRKIRGNDINAACGQL 349
+ I+ ++GI +R RG DI+AACGQL
Sbjct: 328 SNIVFDAGISAPVRTPRGRDIDAACGQL 355
>gi|393723122|ref|ZP_10343049.1| radical SAM protein [Sphingomonas sp. PAMC 26605]
Length = 402
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 207/328 (63%), Gaps = 9/328 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RAKQL WI+ GV DF MTD++ +++ L+ I P ++ Q+S DGTRKW+
Sbjct: 58 LRAKQLWHWIYNRGVRDFALMTDIAKTMQPWLEQRFVISRPQVVEAQVSNDGTRKWLLRS 117
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
N E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+
Sbjct: 118 DDGNDYEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTAGEIVGQV-----M 172
Query: 143 LRREKNIKINSQGK-RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
L R+ + SQ + R +TNIVMMGMGEPL N+ + LK+++ GLSRR + LST
Sbjct: 173 LARDALGEWPSQPEGRMLTNIVMMGMGEPLYNFDNVRDGLKIVMDGDGLGLSRRRITLST 232
Query: 202 SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261
SG++P++ + +E V LA+SLHA +R++LVPI+KKY ++EL+ AC Y +
Sbjct: 233 SGVVPLMARAGEEISVNLAISLHAVTKEVRDELVPINKKYGIEELLQACADYPGTNNARR 292
Query: 262 ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIF 321
ITFEY ML ND+D A EL+ L++ + K+NLIPFN +P + CS RIK F
Sbjct: 293 ITFEYVMLKDKNDSDADARELVRLLKHYDL--PAKVNLIPFNPWPGAPYECSTPERIKSF 350
Query: 322 AKILMNSGIFVTIRKIRGNDINAACGQL 349
+ I+ ++GI +R RG DI+AACGQL
Sbjct: 351 SNIVFDAGISAPVRTPRGRDIDAACGQL 378
>gi|340777431|ref|ZP_08697374.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter aceti NBRC
14818]
Length = 393
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 215/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + +GE PFR KQL WI+ GV+DF KMT ++ L++KL +
Sbjct: 36 DLVGLSREELTEELVAIGEKPFRTKQLWHWIYHQGVTDFTKMTSIAKPLQQKLAERFIVG 95
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 96 RPDPAVVQTSQDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 155
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K ++ R ++ IV+MGMGEPL NY++
Sbjct: 156 TQKLVRNLGAAEIVGQFMAARDSYNEWPSPKGDT--PRLLSTIVLMGMGEPLYNYENVAK 213
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+++I+ GLSRR + LSTSG++P++D+ E + LAVSLHA N+LR+++VP+++
Sbjct: 214 AMRIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDEIVPLNR 273
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++E+I AC RY S ITFEY ML GIND++ A EL+ L+R K+NL
Sbjct: 274 KYPIEEVIAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLIRG----IPAKVNL 329
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S + FA+I+M++G IR RG DI AACGQL
Sbjct: 330 IPFNVWPGSDYKPSTREQQAKFAQIVMDAGFASPIRTPRGRDILAACGQL 379
>gi|258542583|ref|YP_003188016.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01]
gi|384042504|ref|YP_005481248.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-12]
gi|384051021|ref|YP_005478084.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-03]
gi|384054129|ref|YP_005487223.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-07]
gi|384057363|ref|YP_005490030.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-22]
gi|384060004|ref|YP_005499132.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-26]
gi|384063296|ref|YP_005483938.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-32]
gi|384119306|ref|YP_005501930.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|421849418|ref|ZP_16282398.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus NBRC
101655]
gi|256633661|dbj|BAH99636.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01]
gi|256636720|dbj|BAI02689.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-03]
gi|256639773|dbj|BAI05735.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-07]
gi|256642829|dbj|BAI08784.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-22]
gi|256645884|dbj|BAI11832.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-26]
gi|256648937|dbj|BAI14878.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-32]
gi|256651924|dbj|BAI17858.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256654981|dbj|BAI20908.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter pasteurianus
IFO 3283-12]
gi|371459741|dbj|GAB27601.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus NBRC
101655]
Length = 408
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 216/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ GV+DF++M+ ++ L++KL I
Sbjct: 49 DLVGLSRDELTDILTEIGEKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLAERFIIG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P + Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPEAATVQTSSDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+ Q + K + R ++ IV+MGMGEPL NY++
Sbjct: 169 TQKLVRNLGAAEIVSQFMAARDSYGEWPSPK--GETPRLLSTIVLMGMGEPLYNYENVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ GLSRR + LSTSG++P++D+ E + LAVSLHA N+LR+++VP+++
Sbjct: 227 AMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDEIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++E++ AC RY S ITFEY ML GIND++ A EL+ L+ K+NL
Sbjct: 287 KYPIEEVLAACRRYPAASNARRITFEYIMLRGINDSEADARELVRLISG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S + FA+I+MN+G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
>gi|162147642|ref|YP_001602103.1| hypothetical protein GDI_1858 [Gluconacetobacter diazotrophicus PAl
5]
gi|209542271|ref|YP_002274500.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786219|emb|CAP55801.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209529948|gb|ACI49885.1| radical SAM enzyme, Cfr family [Gluconacetobacter diazotrophicus
PAl 5]
Length = 404
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 214/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
L+ LS + E+GE PFR KQL WI+ GV+DF +M+ ++ L+ KL +
Sbjct: 48 ELVGLSREELTQALVEIGEKPFRTKQLWHWIYHQGVTDFARMSSIAKPLQAKLAERFVVG 107
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 108 RPDAAMVQTSTDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 167
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K ++ R ++ IV+MGMGEPL NY++
Sbjct: 168 TQKLVRNLGAAEIVGQFMAARDSYGEWPSPKGDT--PRLLSTIVLMGMGEPLYNYENIAK 225
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ GLSRR + LSTSG+IPM+D+ E + LA+SLHA N+LR+++VP+++
Sbjct: 226 AMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGSELGINLAISLHAVRNDLRDEIVPLNR 285
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP+++LI AC RY T S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 286 KYPIEDLIAACRRYPTASNARRITFEYIMLRGVNDSEAEARELVRLIAG----IPAKVNL 341
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S S ++ FA+I+M++G IR RG DI AACGQL
Sbjct: 342 IPFNPWPGSAYKPSTREQLAKFAQIVMDAGFASPIRMPRGRDILAACGQL 391
>gi|421854121|ref|ZP_16286749.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371477597|dbj|GAB31952.1| iron-sulfur cluster redox enzyme [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 408
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 216/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ GV+DF++M+ ++ L++KL I
Sbjct: 49 DLVGLSRDELTDILTEIGEKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLAERFIIG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P + Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPEAATVQTSSDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+ Q + K + R ++ IV+MGMGEPL NY++
Sbjct: 169 TQKLVRNLGAAEIVSQFMAARDSYGEWPSPK--GETPRLLSTIVLMGMGEPLYNYENVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ GLSRR + LSTSG++P++D+ E + LAVSLHA N+LR+++VP+++
Sbjct: 227 AMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDEIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++E++ AC RY S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 287 KYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S + FA+I+MN+G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
>gi|416086880|ref|ZP_11587562.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348009813|gb|EGY49923.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 311
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 202/297 (68%), Gaps = 13/297 (4%)
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
IKAP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 4 IKAPEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQ 63
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
QGF RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + +
Sbjct: 64 QGFNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVP 117
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++K
Sbjct: 118 AMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNK 177
Query: 240 KYPLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KY +K LI + +RY++ S + +T EY ML IND HA +L ++++ T CKI
Sbjct: 178 KYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAAVLKN----TPCKI 233
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 234 NLIPWNPFPQAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 290
>gi|389878972|ref|YP_006372537.1| cfr family radical SAM enzyme [Tistrella mobilis KA081020-065]
gi|388529756|gb|AFK54953.1| cfr family radical SAM enzyme [Tistrella mobilis KA081020-065]
Length = 421
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 200/332 (60%), Gaps = 8/332 (2%)
Query: 19 LGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRK 78
LGE PFRAKQL W++ G DF+ MT++ + R KL I P I +DQ+S DGT K
Sbjct: 60 LGEKPFRAKQLWHWMYFRGARDFDDMTNVPKAFRAKLAEHFVIGRPEITTDQLSSDGTAK 119
Query: 79 WIFH-VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 137
W+ +ETV IP+ R LC+S+QVGC + C FC TG Q +VRNL+ EI Q+
Sbjct: 120 WLLRFADGREVETVHIPDDGRGALCVSSQVGCTLTCKFCHTGTQTWVRNLSAAEITAQML 179
Query: 138 VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHV 197
V +L + R I+NIV+MGMGEPL N+ + A+++++ LSRR +
Sbjct: 180 VARDRL---GEWPTPTDANRLISNIVLMGMGEPLYNFDAVAKAMRIVMDGEGVALSRRRI 236
Query: 198 ILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257
LSTSG++PM+ + +E V LAVSLHA +++R+ LVPI++KYP+ EL+ AC Y S
Sbjct: 237 TLSTSGVVPMMQRCGEELGVNLAVSLHAVTDDVRDVLVPINRKYPIAELMEACRTYPAAS 296
Query: 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR 317
ITFEY ML G+ND+ A EL+ L+ K+NLIPFN +P S CS ++
Sbjct: 297 NARRITFEYVMLKGVNDSLADARELVRLLDG----IPAKVNLIPFNPWPGSTFECSSWTQ 352
Query: 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
I+ FA L + G +R RG DI AACGQL
Sbjct: 353 IRNFATYLNDQGYSSPVRTPRGRDILAACGQL 384
>gi|85374384|ref|YP_458446.1| Fe-S-cluster redox protein [Erythrobacter litoralis HTCC2594]
gi|123409605|sp|Q2N9J2.1|RLMN_ERYLH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|84787467|gb|ABC63649.1| predicted Fe-S-cluster redox enzyme [Erythrobacter litoralis
HTCC2594]
Length = 418
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 208/338 (61%), Gaps = 14/338 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R+KQ+ W++ GV+DF MTD++ ++R L + P+++ Q S DGTRKW+
Sbjct: 56 LRSKQVYHWLYHRGVTDFEAMTDIAKTMRPWLAERFIVGRPNVVEAQHSTDGTRKWLLQT 115
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+ +
Sbjct: 116 DDGHDFEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTPGEIVGQVMLARDA 175
Query: 143 LRREKNIKIN-----------SQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYG 191
L +++ S R +TNIVMMGMGEPL N+ + ALKL++
Sbjct: 176 LGEWPKGRMDGLDDVEDTGHYSADGRLLTNIVMMGMGEPLYNFDNVRDALKLVMDGEGLA 235
Query: 192 LSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251
LS+R + LSTSG++PM+++ +E V LAVSLHA ++R+++VPI+KKY ++EL+ AC
Sbjct: 236 LSKRRITLSTSGVVPMMERCGEEIGVNLAVSLHAVTKDIRDEIVPINKKYGIEELLQACA 295
Query: 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
Y S ITFEY ML NDTD HA EL+ L+++ + K+NLIPFN +P +
Sbjct: 296 DYPGASNARRITFEYVMLKDKNDTDEHARELVRLLKQYNL--PAKVNLIPFNPWPGAAYE 353
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
CS RI+ F+ I+ GI +R RG DI+AACGQL
Sbjct: 354 CSTPERIRAFSNIVFEGGISAPVRTPRGRDIDAACGQL 391
>gi|71729314|gb|EAO31430.1| Conserved hypothetical protein 48 [Xylella fastidiosa Ann-1]
Length = 309
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 142/291 (48%), Positives = 200/291 (68%), Gaps = 14/291 (4%)
Query: 72 SFDGTRKWIFHV---KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLT 128
S DGT KW+ + +KN IETV+IP+K R TLC+S+Q+GC +NC FCST QGF RNLT
Sbjct: 2 SADGTHKWLLAMGTDRKNAIETVYIPDKGRGTLCVSSQIGCGLNCTFCSTATQGFNRNLT 61
Query: 129 VGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDH 188
EIIGQ+WV L N+ +R++TN+VMMGMGEPL+N+ + + A+ ++ D
Sbjct: 62 TAEIIGQVWVAARHL---GNV---PHQRRRLTNVVMMGMGEPLMNFDNVVRAMSVMRDDL 115
Query: 189 AYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248
YGLS + V LSTSG++PMID+L+ E V LAVSLHA N+ LR +LVP++KKYP+ EL+
Sbjct: 116 GYGLSNKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAPNDKLREQLVPLNKKYPIVELMA 175
Query: 249 ACHRYITYS-PRHMITFEYCMLHGINDTDIHAIELISLMRK----NKILTSCKINLIPFN 303
+C RY++ + R +TFEY ++ G+ND HA EL LMR+ ++ + K+NLIPFN
Sbjct: 176 SCERYLSVNRKRDSVTFEYTLMKGVNDKQEHAHELAKLMRQFDCAMQVKGAAKVNLIPFN 235
Query: 304 CFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FP + S I+ F KIL+++ I +R+ RG+DI+AACGQL G+++
Sbjct: 236 PFPGTCYERSTEVDIRAFQKILLDAQILAMVRRTRGDDIDAACGQLKGQVV 286
>gi|402849634|ref|ZP_10897862.1| Ribosomal RNA large subunit methyltransferase N [Rhodovulum sp.
PH10]
gi|402500111|gb|EJW11795.1| Ribosomal RNA large subunit methyltransferase N [Rhodovulum sp.
PH10]
Length = 422
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 155/363 (42%), Positives = 217/363 (59%), Gaps = 20/363 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAK----QLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS K +G P +AK Q+ W++ G DF MT +S LR KL
Sbjct: 42 SLVGLSREKLREALIGIGVPPAQAKMRLQQVWHWLYVRGAQDFEVMTSMSKELRVKLAEH 101
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV------KKNIIETVFIPEKNRNTLCISTQVGCAIN 112
+ P ++++Q+S DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC ++
Sbjct: 102 YTLARPEVVAEQVSTDGTRKWLLRMPGDGAGRAHEVECVYIPETDRGTLCVSSQVGCTLS 161
Query: 113 CIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIK------INSQGKRQITNIVMMG 166
C FC TG Q VRNLT GEI+GQL V +L K + + G R ++NIVMMG
Sbjct: 162 CTFCHTGTQRLVRNLTAGEIVGQLLVARDRLGDWPGGKPPTDGIVPTDGGRFVSNIVMMG 221
Query: 167 MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHAS 226
MGEPL N+++ AL ++ GLS+R + LSTSG++PMI+K E V LA+SLHA
Sbjct: 222 MGEPLYNFEAVRDALLVVADGEGLGLSKRRITLSTSGVVPMIEKAGAEIGVMLAISLHAV 281
Query: 227 NNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLM 286
+ +R+KLVP++KKYP+ EL+ AC Y S ITFEY ML G+ND+ A L+ L+
Sbjct: 282 RDEIRDKLVPLNKKYPIAELMAACRDYPGLSNAKRITFEYVMLKGVNDSLADAKALVKLL 341
Query: 287 RKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAAC 346
+ KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AAC
Sbjct: 342 KG----IPAKINLIPFNPWPGSTYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDIFAAC 397
Query: 347 GQL 349
GQL
Sbjct: 398 GQL 400
>gi|407768066|ref|ZP_11115445.1| Fe-S-cluster redox protein [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288779|gb|EKF14256.1| Fe-S-cluster redox protein [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 414
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 209/351 (59%), Gaps = 12/351 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + E+GE FR KQ+ WI+ GV D MT++S LR +L YI
Sbjct: 42 DLVGLSRDQLAELLGEMGESKFRVKQMWNWIYNRGVKDIEDMTNISKKLRDRLSQDFYIG 101
Query: 63 APHIMSDQISFDGTRKWI--FHVKKNIIETVFIPEKN--RNTLCISTQVGCAINCIFCST 118
P + +DQ S D T KW+ FH N ETV+IP++N R +CIS+QVGC + C FC T
Sbjct: 102 RPILTADQKSSDDTHKWLMKFH-DGNEAETVYIPDRNEDRGAVCISSQVGCTLTCKFCHT 160
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
G Q VRNLT GEII Q V + G R+++NIVMMGMGEPL NY++
Sbjct: 161 GTQLLVRNLTPGEIISQFMVARDSY---GEWPTPANGIRRLSNIVMMGMGEPLFNYENVR 217
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
ALK+ + +SRR V LSTSG++P I + +E V LA+SLHA +++LRN+++PI+
Sbjct: 218 EALKIAMDGEGISISRRRVTLSTSGVVPEIVRCGEELGVGLAISLHAPDDDLRNEIMPIN 277
Query: 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KKYPLKEL+ AC Y S IT EY ML G+ND HA L L++ CK N
Sbjct: 278 KKYPLKELMDACRHYPGMSNSRPITMEYVMLKGVNDKPEHARALAKLVKG----VHCKFN 333
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
LIPFN +P S+ C+ + IK FA L+ G IR RG DI AACGQL
Sbjct: 334 LIPFNKWPGSDYECTPTNDIKKFAHTLLELGYEAPIRWPRGRDILAACGQL 384
>gi|354593754|ref|ZP_09011797.1| radical SAM enzyme, Cfr family protein [Commensalibacter intestini
A911]
gi|353672865|gb|EHD14561.1| radical SAM enzyme, Cfr family protein [Commensalibacter intestini
A911]
Length = 404
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 215/351 (61%), Gaps = 9/351 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
T L+ LS + ++GE FR KQL WI+ G +DFN+MT + LR KL + I
Sbjct: 42 TELVGLSRAELEQLLVDMGEQRFRTKQLWHWIYHKGATDFNEMTSIGKPLRAKLIDRCVI 101
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCST 118
P ++++Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC T
Sbjct: 102 SRPKVVTEQTSKDETRKFLFQFRDGQEAETVYIPDRRADRGAVCISSQVGCTLSCRFCHT 161
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
G Q VRNL EII Q + R ++ IV+MGMGEPL NY++
Sbjct: 162 GTQNLVRNLGSSEIISQFMAARDSYGEWPTPTADR--PRLLSTIVLMGMGEPLYNYENIA 219
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
A+++ + D G+SRR + LSTSG++PM+D+ + V LA+SLHA ++LRN++VP++
Sbjct: 220 KAMRIAMDDEGIGISRRRITLSTSGVVPMMDQCGHDLAVNLAISLHAVRDDLRNEIVPLN 279
Query: 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
+KYP+K+++ AC RY S ITFEY ML GIND++ A EL+ L++ K+N
Sbjct: 280 RKYPIKDVLAACRRYPAASNSRRITFEYIMLRGINDSEADARELVRLLKG----IHAKVN 335
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
LIPFN +P S+ SK +++ FA I+M +G IR RG DI AACGQL
Sbjct: 336 LIPFNPWPGSDYKPSKGEQVQKFADIIMQAGYSSPIRTPRGRDILAACGQL 386
>gi|367474570|ref|ZP_09474067.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 285]
gi|365273108|emb|CCD86535.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 285]
Length = 403
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/358 (43%), Positives = 215/358 (60%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + ELG + R +QL W++ G S F++MT +S R L
Sbjct: 29 SLIGLSRAELAATLGELGVPERQQKMRVQQLWHWLYFRGASSFDEMTSVSKDTRTTLAER 88
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 89 FTVDRPEVVAEQISNDGTRKWLLRLPSGDGLQKAHEVECVYIPETDRGTLCVSSQVGCTL 148
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R ITNIVMMGMGEPL
Sbjct: 149 NCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWAD-RETPHGNRLITNIVMMGMGEPL 207
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 208 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVALAISLHAVRDELR 267
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+ EL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 268 NELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVKLLKG--- 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 325 -IPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|387129969|ref|YP_006292859.1| ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM7]
gi|386271258|gb|AFJ02172.1| Ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM7]
Length = 281
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 137/269 (50%), Positives = 194/269 (72%), Gaps = 11/269 (4%)
Query: 86 NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRR 145
N IETVFIPE NR TLC+S+QVGCA+ C FCSTG+QGF RNL+ EII QLWV L++
Sbjct: 5 NAIETVFIPEGNRGTLCVSSQVGCALTCTFCSTGQQGFNRNLSAAEIIAQLWVANDALKK 64
Query: 146 EKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII 205
+ +G R +TN+VMMGMGEPL NY + + A++++ D+ YG+S R + LSTSG++
Sbjct: 65 D------PKGNRVVTNVVMMGMGEPLANYLNVVRAMRIMRDDYGYGISWRRLTLSTSGMV 118
Query: 206 PMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS-PRHMITF 264
PMID+L ++CPV LA+SLHA+N+ LR++++P++ KYP+ +L+ ACHRY++ R IT
Sbjct: 119 PMIDRLKEDCPVSLAISLHAANDTLRSEMIPLNDKYPIADLLAACHRYVSGGQQRRHITI 178
Query: 265 EYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKI 324
EY ML G+ND+ A +LI L++ KINLIPFN FP ++ CS ++ F +
Sbjct: 179 EYVMLAGVNDSAQDARDLIRLLKG----LPNKINLIPFNPFPGTHYRCSSRKNLERFKQQ 234
Query: 325 LMNSGIFVTIRKIRGNDINAACGQLSGKI 353
L+++G VT+RK RG+DI AACGQL+G++
Sbjct: 235 LIDAGQIVTVRKTRGDDIVAACGQLAGEV 263
>gi|383768579|ref|YP_005447642.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobium sp.
S23321]
gi|381356700|dbj|BAL73530.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobium sp.
S23321]
Length = 400
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 220/361 (60%), Gaps = 18/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G P R +QL W++ G +F++MT +S +R +L
Sbjct: 28 SLIGLSRAELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSVSKGIRAELAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDNVQKAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQIMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ +++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKMLKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQLKS 380
Query: 352 K 352
+
Sbjct: 381 E 381
>gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700]
gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700]
Length = 311
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/297 (50%), Positives = 201/297 (67%), Gaps = 13/297 (4%)
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
IKAP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 4 IKAPEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQ 63
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
QGF RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + +
Sbjct: 64 QGFNRNLTVSEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVP 117
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++K
Sbjct: 118 AMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNK 177
Query: 240 KYPLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KY +K LI + +RY++ S + +T EY ML +ND HA +L +++ T CKI
Sbjct: 178 KYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLAEVLKN----TPCKI 233
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 234 NLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 290
>gi|27375636|ref|NP_767165.1| hypothetical protein bll0525 [Bradyrhizobium japonicum USDA 110]
gi|81740269|sp|Q89X03.1|RLMN_BRAJA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|27348773|dbj|BAC45790.1| bll0525 [Bradyrhizobium japonicum USDA 110]
Length = 400
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 220/361 (60%), Gaps = 18/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G P R +QL W++ G +F++MT +S +R +L
Sbjct: 28 SLIGLSRNELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFDEMTSISKGIRAELAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDNVEKAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQVMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQLKS 380
Query: 352 K 352
+
Sbjct: 381 E 381
>gi|296116218|ref|ZP_06834836.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977324|gb|EFG84084.1| radical SAM enzyme, Cfr family protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 410
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 212/350 (60%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
L+ LS + E+GE PFR KQL WI+ G +DF+ M+ ++ L++KL I
Sbjct: 49 ELVGLSREELTEILLEIGEKPFRTKQLWHWIYHQGATDFSCMSSIAKPLQEKLAERFVIS 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P + Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPQAATVQTSSDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
QG VRNL EI+GQ + + + R ++ IV+MGMGEPL NY++
Sbjct: 169 TQGLVRNLGAAEIVGQFMAARDSYGEWPSPR--GETPRLLSTIVLMGMGEPLYNYENIAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ GLSRR + LSTSG+IPM+D+ E + LA+SLHA ++LR++LVP+++
Sbjct: 227 AMKIIMDGEGIGLSRRRITLSTSGVIPMMDQCGDELGINLAISLHAVRDDLRDELVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP+ +LI AC RY S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 287 KYPIADLIAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLIAG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S S ++ FA I+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSRFQPSTREQLDRFANIVMDAGFASPIRMPRGRDILAACGQL 392
>gi|299133126|ref|ZP_07026321.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
gi|298593263|gb|EFI53463.1| radical SAM enzyme, Cfr family [Afipia sp. 1NLS2]
Length = 403
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 220/360 (61%), Gaps = 15/360 (4%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ELG + RA+QL W++ G F MT++S +R +L+
Sbjct: 30 SLIGLSRAELMACLGELGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRTQLEAR 89
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV------KKNIIETVFIPEKNRNTLCISTQVGCAIN 112
+ P ++++QIS DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +N
Sbjct: 90 FTVDRPEVVAEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCTLN 149
Query: 113 CIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172
C FC TG Q VRNLT GEI+GQ+ V +L + + G R +TN+VMMGMGEPL
Sbjct: 150 CSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVD-RETPNGNRLVTNVVMMGMGEPLY 208
Query: 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRN 232
N+ + AL +++ + LSRR + LSTSG++P I ++ +E V LA+SLHA + LRN
Sbjct: 209 NFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLHAVRDELRN 268
Query: 233 KLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
+LVP++KKYPL +L+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 269 ELVPLNKKYPLAQLLDACRNYPGASNSRRITFEYVMLKGVNDSLDDAKLLVKLLKG---- 324
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL +
Sbjct: 325 IPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQLKSE 384
>gi|319760652|ref|YP_004124590.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
Length = 359
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 223/356 (62%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD+SP K + + +LGE FR+ Q+ WI+K SDFNKMT+L LR KL I
Sbjct: 7 NLLDMSPKKLLVFFNKLGECAFRSDQIMDWIYKKYCSDFNKMTNLHKDLRVKLNQISEIN 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I +Q S DGTRKW+ + + +ETV+IP+ NR TLCIS+Q GCA+ C FC T +
Sbjct: 67 APIITHEQESSDGTRKWMMRIHDDKYVETVYIPDNNRATLCISSQSGCALGCSFCGTAKL 126
Query: 122 GFVRNLTVGEIIGQLW-VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF++NL EI+GQ+W + F K N IT+IV MGMGEPLLN + + +
Sbjct: 127 GFIKNLRTSEIVGQVWRIARFISHYNKQQVKNCNNLIPITHIVFMGMGEPLLNLMNVVSS 186
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
+++IL+ + LS+ HV LSTSG++P IDKL V LAVSLHA N+ +RNK++PI+KK
Sbjct: 187 IQIILNSSGFNLSKHHVTLSTSGVVPGIDKLKDMVDVSLAVSLHAPNDVIRNKIMPINKK 246
Query: 241 YPLKELI--LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
Y + L+ + C+ T S +T EY +L+ IND HA EL K I CK+N
Sbjct: 247 YNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDEIEHAHEL----AKKLITLPCKVN 302
Query: 299 LIPFNCFPN-SNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
L+ +N N L + ++R+ F K+L N GI TIRK+RG DI+A+CGQL G+I
Sbjct: 303 LMRWNSIKNIKYLKSTSDARLNNFYKVLKNYGIVTTIRKVRGADIHASCGQLMGEI 358
>gi|144899244|emb|CAM76108.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
MSR-1]
Length = 380
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 213/353 (60%), Gaps = 14/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNL+ LS + +GE PFRAKQL W++ G +DF KMT +S ++++L +
Sbjct: 8 TNLIGLSRDQLTAEMASIGEKPFRAKQLWHWLYNRGETDFLKMTSISKVMQERLAERYVV 67
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKN--RNTLCISTQVGCAINCIFCST 118
+ P + + S D TRKW+ N ETV+IP+++ R +CIS+QVGC + C FC T
Sbjct: 68 RRPLVERELTSVDTTRKWLLKFDDGNEAETVYIPDEDEQRGAVCISSQVGCTLTCKFCHT 127
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREK--NIKINSQGKRQITNIVMMGMGEPLLNYKS 176
G Q VRNLT EI+GQ F L R+ R ++NIVMMGMGEPL N+ +
Sbjct: 128 GTQLLVRNLTAAEIVGQ-----FMLARDSYGEWPTPDDTTRLLSNIVMMGMGEPLYNFDN 182
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
ALK+I+ G+SRR + LSTSG++PM+ + E V LA+SLHA + +RN+++P
Sbjct: 183 VATALKIIMDGEGIGISRRRITLSTSGVVPMMGRAGAELGVNLAISLHAVTDEVRNQIMP 242
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
I+KKYPLKEL+ AC Y S ITFEY ML GIND+ A EL+ L++ K
Sbjct: 243 INKKYPLKELMQACRDYPGASNARRITFEYVMLKGINDSLADARELLRLVKG----LPAK 298
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
NLIPFN +P S+ CS I+ F+ ++ ++G IRK RG DI AACGQL
Sbjct: 299 FNLIPFNPWPGSDYECSSMRDIRAFSDLIQDNGYSAPIRKSRGADILAACGQL 351
>gi|407772688|ref|ZP_11119990.1| Fe-S-cluster redox protein [Thalassospira profundimaris WP0211]
gi|407284641|gb|EKF10157.1| Fe-S-cluster redox protein [Thalassospira profundimaris WP0211]
Length = 418
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 213/351 (60%), Gaps = 12/351 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ ++ + +GE FR KQL WI+ GV+D MT++S LR +L Y+
Sbjct: 41 DLVGITREELTELMAGMGESKFRVKQLWNWIYNRGVTDIEDMTNISKKLRDRLAQDFYVG 100
Query: 63 APHIMSDQISFDGTRKWI--FHVKKNIIETVFIPEKN--RNTLCISTQVGCAINCIFCST 118
P + +DQ S D T KW+ FH N ETV+IP++N R +CIS+QVGC + C FC T
Sbjct: 101 RPVLTADQKSTDDTHKWLMKFH-DGNEAETVYIPDRNEDRGAVCISSQVGCTLTCKFCHT 159
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
G Q VRNLT GEI+ Q V + G R+++NIVMMGMGEPL NY++
Sbjct: 160 GTQLLVRNLTPGEIVSQFMVARDSY---GEWPTPANGIRRLSNIVMMGMGEPLFNYENVR 216
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238
AL++ + +SRR + LSTSG++P I + ++ V LA+SLHA +++LRN+++PI+
Sbjct: 217 DALRIAMDGEGISISRRRITLSTSGVVPEIVRCGEDLGVGLAISLHAPDDDLRNEIMPIN 276
Query: 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
KKYPLKEL+ AC Y S IT EY ML G+ND HA L L++ CK N
Sbjct: 277 KKYPLKELMDACRNYPGMSNARPITMEYVMLKGVNDKPEHARALAKLVKG----VHCKFN 332
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
LIPFN +P S+ C+ + IK FA+IL+++G IR RG DI AACGQL
Sbjct: 333 LIPFNKWPGSDYECTPTNDIKKFAQILLDNGYEAPIRWPRGRDILAACGQL 383
>gi|386399537|ref|ZP_10084315.1| 23S rRNA m2A2503 methyltransferase [Bradyrhizobium sp. WSM1253]
gi|385740163|gb|EIG60359.1| 23S rRNA m2A2503 methyltransferase [Bradyrhizobium sp. WSM1253]
Length = 400
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 220/361 (60%), Gaps = 18/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G P R +QL W++ G +F +MT +S +R +L
Sbjct: 28 SLIGLSRTELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFEEMTSVSKGIRAELAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDNVERAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQVMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+++ AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFEAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ +++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKMLKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQLKS 380
Query: 352 K 352
+
Sbjct: 381 E 381
>gi|83952609|ref|ZP_00961339.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
ISM]
gi|83835744|gb|EAP75043.1| radical SAM enzyme, Cfr family protein [Roseovarius nubinhibens
ISM]
Length = 395
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 206/327 (62%), Gaps = 3/327 (0%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R Q+ +WI+++GV DF+ MT+L+ + R +L I+ P ++S Q+S DGTRK++ +
Sbjct: 49 MRVSQIWQWIYQWGVRDFDAMTNLAKAYRAELAEKFVIEIPEVVSKQVSSDGTRKYLVRI 108
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ +E V+IPE++R TLC+S+QVGC + C FC TG Q VRNLT GEIIGQ+ +
Sbjct: 109 AGGHEVEVVYIPEEDRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAGEIIGQVMMARDD 168
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L R ++NIV+MGMGEPL N+ + A+K+ + LSRR + LSTS
Sbjct: 169 LGEWPEQGAPKDETRLLSNIVLMGMGEPLYNFDNVRDAMKIAMDAEGIQLSRRRITLSTS 228
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++P I + AQE +LA+S HA+ + RNKLVPI+K++ ++EL+ A Y S I
Sbjct: 229 GVVPEIARTAQEIGCQLAISFHATTDETRNKLVPINKRWNIEELLQALASYPKVSNSERI 288
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML G+NDTD A LI +++ + I KINLIPFN +P + S N+RI+ FA
Sbjct: 289 TFEYVMLDGVNDTDDDARRLIQMIKDHAI--PAKINLIPFNEWPGAPYKRSSNNRIRAFA 346
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
I+ +G IR RG DI AACGQL
Sbjct: 347 DIIYKAGYASPIRTPRGEDIMAACGQL 373
>gi|444334181|ref|ZP_21149798.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|443550745|gb|ELT58898.1| radical SAM enzyme, Cfr family [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 362
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 201/297 (67%), Gaps = 13/297 (4%)
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
IKAP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +
Sbjct: 4 IKAPEVAVEQRSADGTIKWAMQVGDQQVETVYIPEADRATLCVSSQVGCALACTFCSTAQ 63
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
QGF RNLTV EIIGQ+W R K I G R ITN+VMMGMGEPLLN + +
Sbjct: 64 QGFNRNLTVAEIIGQVW------RASKIIGNFGVTGVRPITNVVMMGMGEPLLNVANVVP 117
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++++L D AYGLS+R V LSTSG++P +D L++ V LA+SLHA N+ LR+++VP++K
Sbjct: 118 AMEIMLDDFAYGLSKRRVTLSTSGVVPALDNLSKMIDVALAISLHAPNDELRDEIVPLNK 177
Query: 240 KYPLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
KY +K LI + +RY++ S + +T EY ML IND HA +L +++ T CKI
Sbjct: 178 KYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHINDHVEHAHQLAEVLKN----TPCKI 233
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
NLIP+N FP + S N+RI F K LM G+ V +RK RG+DI+AACGQL+G ++
Sbjct: 234 NLIPWNPFPEAPYAKSSNTRIDRFQKTLMEYGLTVIVRKTRGDDIDAACGQLAGDVI 290
>gi|357032441|ref|ZP_09094379.1| putative Fe-S-cluster redox protein [Gluconobacter morbifer G707]
gi|356413978|gb|EHH67627.1| putative Fe-S-cluster redox protein [Gluconobacter morbifer G707]
Length = 403
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 214/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ L+ + E+GE PFRAKQL WI+ G +DF+KM+ ++ ++ KL +
Sbjct: 49 DLVGLNREELAALMTEIGEKPFRAKQLWHWIYHQGATDFSKMSTIAKPMQAKLAEHFIVG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P + Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPTTSTQQTSVDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + ++ R ++ IV+MGMGEPL NY++
Sbjct: 169 TQKLVRNLGPAEIVGQFMAARDSYGEWPSPTGDT--PRLLSTIVLMGMGEPLYNYENVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+++ LSRR + LSTSG++PM+D+ E V LA+SLHA N LR+++VP+++
Sbjct: 227 AMKIVMDGDGIALSRRRITLSTSGVVPMMDRCGDELGVNLAISLHAVTNELRDQIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++EL+ AC RY S ITFEY ML GIND++ A EL+ L+R K+NL
Sbjct: 287 KYPIEELMAACKRYPAASNSRRITFEYIMLRGINDSEADARELVRLIRD----LPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S ++ FA I+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDFRPSTKEQLNKFANIVMDAGFSSPIRTPRGRDILAACGQL 392
>gi|312114859|ref|YP_004012455.1| Cfr family radical SAM protein [Rhodomicrobium vannielii ATCC
17100]
gi|311219988|gb|ADP71356.1| radical SAM enzyme, Cfr family [Rhodomicrobium vannielii ATCC
17100]
Length = 412
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 209/339 (61%), Gaps = 17/339 (5%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RA QL W + G +DF +T+++ SLR +L + P I ++QIS DGTRKW+ +
Sbjct: 56 MRAAQLWNWTYARGATDFMALTNIAKSLRAELDARFTLARPEIAAEQISEDGTRKWLLRL 115
Query: 84 -------KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQL 136
+ IETV+IPE +R TLCIS+QVGC +NC FC TG Q VRNLT EI+GQ+
Sbjct: 116 APSHPAERPPEIETVYIPEPDRGTLCISSQVGCTLNCSFCHTGTQRLVRNLTAAEIVGQI 175
Query: 137 WVTEFKLRREKNIKINS------QGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAY 190
V ++ + + + +R+ITNIV+MGMGEPL N+++ A+ L A
Sbjct: 176 LVARDRVGDWPDADGPADRHGIPESERKITNIVLMGMGEPLYNFENVKAAVGLATDADAL 235
Query: 191 GLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILAC 250
S+R + LSTSG++PM+ + +E V LA+SLHA ++LR++LVPI++KYPLKEL+ AC
Sbjct: 236 SFSKRRLTLSTSGVVPMMHRAGEEMGVMLAISLHAVRDDLRDELVPINRKYPLKELLAAC 295
Query: 251 HRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL 310
Y S +TFEY ML G+ND+ A EL+ L++ KINLIPFN +P +
Sbjct: 296 RAYPGLSNARRMTFEYVMLKGVNDSVAEAKELVRLLKG----IPSKINLIPFNPWPGTAY 351
Query: 311 ICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
CS ++I+ FA ++ +G IR RG DI AACGQL
Sbjct: 352 ECSDWAQIERFADVVNRAGYASPIRTPRGRDIMAACGQL 390
>gi|456351831|dbj|BAM86276.1| putative pyruvate formate lyase activating enzyme 2 [Agromonas
oligotrophica S58]
Length = 403
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/358 (43%), Positives = 214/358 (59%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+LL LS + E+G P R +QL W++ G F++MT +S R L
Sbjct: 29 SLLGLSRAELAATLGEIGVAPRQQKMRVQQLWHWLYFRGAKSFDEMTSVSKDTRTALAEH 88
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 89 FTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGCTL 148
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEIIGQ+ V +L + + G R ITNIVMMGMGEPL
Sbjct: 149 NCSFCHTGTQRLVRNLTAGEIIGQVMVARDRLNDWAD-RETPLGNRLITNIVMMGMGEPL 207
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 208 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLHAVRDELR 267
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+ EL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 268 NELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVKLLKG--- 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 325 -VPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|329115338|ref|ZP_08244092.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
pomorum DM001]
gi|326695317|gb|EGE47004.1| Ribosomal RNA large subunit methyltransferase N [Acetobacter
pomorum DM001]
Length = 408
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 215/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + + E+GE PFR KQL WI+ GV+DF++M+ ++ L++KL I
Sbjct: 49 DLVGLSRDELTDILIEIGEKPFRTKQLWHWIYHQGVTDFSRMSTIAKPLQQKLAERFIIG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P + Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPEAATVQTSSDSTRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+ Q + K + R ++ IV+MGMGEPL NY++
Sbjct: 169 TQKLVRNLGAAEIVSQFMAARDSYGEWPSPK--GETPRLLSTIVLMGMGEPLYNYENVAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ GLSRR + LSTSG++P++D+ E + LAVSLHA N+LR+++VP+++
Sbjct: 227 AMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDEIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++E++ AC RY S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 287 KYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S S + FA+I+MN+G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSAYKPSTREQQNRFAEIVMNAGFASPIRTPRGRDILAACGQL 392
>gi|398826774|ref|ZP_10585008.1| 23S rRNA methyltransferase [Bradyrhizobium sp. YR681]
gi|398220423|gb|EJN06873.1| 23S rRNA methyltransferase [Bradyrhizobium sp. YR681]
Length = 400
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 218/361 (60%), Gaps = 18/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G P R +QL W++ G F+ MT +S +R +L
Sbjct: 28 SLIGLSRSELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQSFDDMTSVSKGIRAELAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDNVQKAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQIMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ +++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKILKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQLKS 380
Query: 352 K 352
+
Sbjct: 381 E 381
>gi|85708979|ref|ZP_01040045.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
gi|85690513|gb|EAQ30516.1| predicted Fe-S-cluster redox enzyme [Erythrobacter sp. NAP1]
Length = 416
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 205/338 (60%), Gaps = 14/338 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RAKQ+ W++ GV+DF MTD+S ++R L I P+I+ Q S DGTRKW+
Sbjct: 56 LRAKQVFHWLYHRGVTDFEAMTDISKTMRPWLAERFVIGRPNIVEAQHSSDGTRKWLLQT 115
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+ +
Sbjct: 116 DDGHDFEMVFIPDADRGTLCVSSQVGCTLNCTFCHTGTMRLVRNLTPGEIVGQVMLARDA 175
Query: 143 L-----------RREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYG 191
L +++ + R +TNIVMMGMGEPL N+ AL L++
Sbjct: 176 LGEWPKGVMDGLDEAEDVGHYTADGRLLTNIVMMGMGEPLYNFDHVRDALNLVMDGDGLA 235
Query: 192 LSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251
LS+R + LSTSG++P +++ +E V LAVSLHA ++R+++VP++KKY ++EL+ AC
Sbjct: 236 LSKRRITLSTSGVVPAMERCGEEIGVNLAVSLHAVTKDVRDEIVPLNKKYGIEELLQACA 295
Query: 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
Y S ITFEY ML ND+D A EL+ L+RK + K+NLIPFN +P +N
Sbjct: 296 DYPGASNARRITFEYVMLKDKNDSDEDARELVRLLRKFDL--PAKVNLIPFNPWPGANYE 353
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
CS RIK F+ I+ GI +R RG DI+AACGQL
Sbjct: 354 CSTPERIKAFSNIVFEGGISAPVRTPRGRDIDAACGQL 391
>gi|384227721|ref|YP_005619466.1| 2-vinyl bacteriochlorophyllide hydratase [Buchnera aphidicola str.
Ak (Acyrthosiphon kondoi)]
gi|345538661|gb|AEO08638.1| 23S rRNA m2A2503 methyltransferase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 363
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 226/353 (64%), Gaps = 13/353 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + LG F Q+ WI+ + +DFNKM ++S +R +L +I
Sbjct: 16 NLLDLNRQDLRCFLISLGAKNFCTDQIMNWIYNYYCNDFNKMFNISKKIRNQLYEKSHIF 75
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
A + +++S+DGT KWI + IETV+IPEK R+TLC+S+Q+GCA+ C FC+TG+ G
Sbjct: 76 ASKFIEEKVSYDGTIKWITSIHNQKIETVYIPEKKRSTLCVSSQIGCALKCHFCATGQAG 135
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F RNL V EII Q+W K +EK I +TNIV MGMGEPLLN + + ALK
Sbjct: 136 FQRNLKVSEIIAQVWRAN-KTLKEKKI------ANGVTNIVFMGMGEPLLNLNNVVSALK 188
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYP 242
+IL + +GLS+R + LSTSGI+P +DKL V LA+SLHA N+++RN ++PI+KKY
Sbjct: 189 IILDKNGFGLSKRRITLSTSGIVPALDKLRHMIDVSLAISLHAPNDSIRNCIMPINKKYN 248
Query: 243 LKELILACHRYITYS--PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
+ ++ + +Y+ YS R +T EY ML G+ND++ +A +L SL+ + KINLI
Sbjct: 249 ISSVLNSTLKYLKYSNANRGGVTIEYVMLDGVNDSNENAQQLASLLSR----IPSKINLI 304
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
P+N F S+ + S +RI IFA IL G IRK RG+DI+AACGQL+G I
Sbjct: 305 PWNSFLGSSFLSSSMNRINIFANILRKKGFTAMIRKNRGDDIHAACGQLTGNI 357
>gi|339024848|ref|ZP_08646746.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter tropicalis
NBRC 101654]
gi|338750147|dbj|GAA10050.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter tropicalis
NBRC 101654]
Length = 404
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/350 (42%), Positives = 214/350 (61%), Gaps = 9/350 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L+ LS + E+GE PFR KQL WI+ GV+DF++M+ ++ L++KL I
Sbjct: 49 DLVGLSRDEITEILLEIGEKPFRTKQLWHWIYHQGVTDFSRMSSIAKPLQQKLAEQFIIG 108
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEK--NRNTLCISTQVGCAINCIFCSTG 119
P Q S D TRK++F + ETV+IP++ +R +CIS+QVGC ++C FC TG
Sbjct: 109 RPDAAMVQTSTDETRKFLFRFRDGQEAETVYIPDRREDRGAVCISSQVGCTLSCTFCHTG 168
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
Q VRNL EI+GQ + K + R ++ IV+MGMGEPL NY++
Sbjct: 169 TQKLVRNLGAAEIVGQFMAARDSYSEWPSPK--GETPRLLSTIVLMGMGEPLYNYENIAK 226
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A+K+I+ GLSRR + LSTSG++P++D+ E + LAVSLHA N+LR+++VP+++
Sbjct: 227 AMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDELGINLAVSLHAVRNDLRDQIVPLNR 286
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYP++E++ AC RY S ITFEY ML G+ND++ A EL+ L+ K+NL
Sbjct: 287 KYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRLISG----IPAKVNL 342
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
IPFN +P S+ S + FA I+M++G IR RG DI AACGQL
Sbjct: 343 IPFNPWPGSDYRPSTREQQNKFADIIMDAGFASPIRTPRGRDILAACGQL 392
>gi|421595506|ref|ZP_16039531.1| hypothetical protein BCCGELA001_00732 [Bradyrhizobium sp.
CCGE-LA001]
gi|404272382|gb|EJZ36037.1| hypothetical protein BCCGELA001_00732 [Bradyrhizobium sp.
CCGE-LA001]
Length = 400
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 150/358 (41%), Positives = 217/358 (60%), Gaps = 18/358 (5%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ++G P R +QL W++ G F+ MT +S +R +L
Sbjct: 28 SLIGLSRTELADRLGDIGVAPAQRKMRVQQLWHWLYFRGAQSFDDMTSISKGIRAELAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDSVQKAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQVMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ +++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKMLKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IPAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQL 378
>gi|399058170|ref|ZP_10744441.1| 23S rRNA methyltransferase [Novosphingobium sp. AP12]
gi|398041218|gb|EJL34292.1| 23S rRNA methyltransferase [Novosphingobium sp. AP12]
Length = 438
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/357 (42%), Positives = 211/357 (59%), Gaps = 21/357 (5%)
Query: 12 FVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQI 71
F N ++ RAKQ+ W++ GV++F MTD++ ++R L + P I+ Q
Sbjct: 60 FENAGLDMKAAKLRAKQVYHWLYHRGVTEFEAMTDIAKTMRPWLAERFVVGRPEIVEAQH 119
Query: 72 SFDGTRKWIFH-VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVG 130
S DGTRKW+ + E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLTVG
Sbjct: 120 SSDGTRKWLLRTADAHDYEMVFIPDADRGTLCVSSQVGCTLNCRFCHTGTMRLVRNLTVG 179
Query: 131 EIIGQL---------W---------VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172
EI+GQ+ W T L +++ + R +TNIVMMGMGEPL
Sbjct: 180 EIVGQVMLARDALGEWPKGAGDVRLATMAGLDEDEDEGDYTSDGRLLTNIVMMGMGEPLY 239
Query: 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRN 232
N+ + ALKL++ LS+R + LSTSG+IP +++ QE V LAVSLHA ++R+
Sbjct: 240 NFDNVRDALKLVMDGDGLALSKRRITLSTSGVIPQMERCGQEIGVNLAVSLHAVTKDVRD 299
Query: 233 KLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
++VPI+KKY L++L+ AC Y S ITFEY ML ND+D A EL+ L++K +
Sbjct: 300 EIVPINKKYGLEDLLQACADYPGASNARRITFEYVMLKDKNDSDSDARELVRLLKKYDL- 358
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
K+NLIPFN +P + CS RI+ F+ I+ GI +R RG DI+AACGQL
Sbjct: 359 -PAKVNLIPFNPWPGAPYECSTPERIRTFSDIVFQGGISAPVRTPRGRDIDAACGQL 414
>gi|338741467|ref|YP_004678429.1| Fe-S protein [Hyphomicrobium sp. MC1]
gi|337762030|emb|CCB67865.1| putative Fe-S containing enzyme (yfgB) [Hyphomicrobium sp. MC1]
Length = 397
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 150/342 (43%), Positives = 204/342 (59%), Gaps = 17/342 (4%)
Query: 21 EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80
++ R QL WI+ GV+ F MTD+S LR++L + + P I+S+QIS DGTRKW+
Sbjct: 41 QLRMRVGQLWSWIYVRGVTSFEDMTDVSKDLRRQLADLYTLDRPEIVSEQISVDGTRKWL 100
Query: 81 FHVKKNI-------IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII 133
+ K IETV+IPE +R TLCIS+QVGC +NC FC TG Q VRNL EI+
Sbjct: 101 LRLAKRSHEARPPEIETVYIPESDRGTLCISSQVGCTLNCSFCHTGTQRLVRNLEAEEIV 160
Query: 134 GQLWVTEFKLRREKNIKINSQGK------RQITNIVMMGMGEPLLNYKSTIGALKLILSD 187
GQ+ + ++ K G+ R+ITN+V+MGMGEPL N+ + A+ +
Sbjct: 161 GQIMLARDRIGDWPGAKGPDDGRLLPNAERKITNVVLMGMGEPLYNFDNVKAAMDVASDG 220
Query: 188 HAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 247
LS+R + LSTSG++P I + +E LA+SLHA+N+ LR++LVPI+KKYP+ EL+
Sbjct: 221 EGLSLSKRRITLSTSGVVPEIPRWGEEADTMLAISLHATNDALRDELVPINKKYPIAELM 280
Query: 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307
AC Y S ITFEY ML G+ND+ A L+ L+ KINLIPFN +P
Sbjct: 281 EACRNYPGLSNARRITFEYVMLKGVNDSLAEARALVRLLSG----IPAKINLIPFNPWPG 336
Query: 308 SNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
S CS I+ FA ++ +G +R RG DI AACGQL
Sbjct: 337 SRYECSDWETIERFADVVNRAGYASPVRTPRGRDILAACGQL 378
>gi|414164722|ref|ZP_11420969.1| ribosomal RNA large subunit methyltransferase N [Afipia felis ATCC
53690]
gi|410882502|gb|EKS30342.1| ribosomal RNA large subunit methyltransferase N [Afipia felis ATCC
53690]
Length = 393
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 220/360 (61%), Gaps = 15/360 (4%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G + RA+QL W++ G F MT++S +R +L+
Sbjct: 20 SLIGLSRAELMVRLGEVGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRAQLEAR 79
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV------KKNIIETVFIPEKNRNTLCISTQVGCAIN 112
+ P ++++Q+S DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +N
Sbjct: 80 FTVDRPEVVAEQVSNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCTLN 139
Query: 113 CIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172
C FC TG Q VRNLT GEI+GQ+ V +L + + G R +TN+VMMGMGEPL
Sbjct: 140 CSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVD-RETPNGNRLVTNVVMMGMGEPLY 198
Query: 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRN 232
N+ + AL +++ + LSRR + LSTSG++P I ++ +E V LA+SLHA + LRN
Sbjct: 199 NFDAVRDALNIVMDNEGIALSRRRITLSTSGVVPNIGRMGEETGVMLAISLHAVRDELRN 258
Query: 233 KLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
+LVP+++KYP+ EL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 259 ELVPLNRKYPIAELLEACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG---- 314
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL +
Sbjct: 315 IPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQLKSE 374
>gi|374571958|ref|ZP_09645054.1| 23S rRNA m2A2503 methyltransferase [Bradyrhizobium sp. WSM471]
gi|374420279|gb|EHQ99811.1| 23S rRNA m2A2503 methyltransferase [Bradyrhizobium sp. WSM471]
Length = 400
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 218/361 (60%), Gaps = 18/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + E+G P R +QL W++ G +F +MT +S +R L
Sbjct: 28 SLIGLSRTELADRLGEIGVAPAQRKMRVQQLWHWMYFRGAQNFEEMTSVSKGIRADLAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDNVERAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQVMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ +++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKMLKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQLKS 380
Query: 352 K 352
+
Sbjct: 381 E 381
>gi|254486932|ref|ZP_05100137.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
gi|214043801|gb|EEB84439.1| radical SAM enzyme, Cfr family [Roseobacter sp. GAI101]
Length = 391
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 206/327 (62%), Gaps = 5/327 (1%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R Q+ +WI+++G DF +MT+LS + R +L I+ P +++ Q+S DGTRK++ +
Sbjct: 49 MRVGQIWQWIYQWGTRDFAEMTNLSKAFRAELAEKFVIEVPEVVTKQVSEDGTRKYLVRI 108
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ +E V+IPE R TLC+S+QVGC + C FC TG Q VRNLT EIIGQ+ V
Sbjct: 109 AGGHEVEVVYIPEDGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDD 168
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L ++ R ++NIV+MGMGEPL N+++ A+K+ + LSRR + LSTS
Sbjct: 169 LDEWPVPGTITEAPRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTS 228
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++P I + A+E +LAVS HA+ + +R+KLVPI+K++ + ELI A Y S I
Sbjct: 229 GVVPEIARTAEEIGCQLAVSFHATTDEVRDKLVPINKRWNIAELIEALRSYPKVSNSERI 288
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML+G+ND+D A LI L+R KINLIPFN +P + S N+RI+ F+
Sbjct: 289 TFEYVMLNGVNDSDADAYRLIELIRG----IPAKINLIPFNEWPGAPYTRSSNNRIRAFS 344
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
+I+ +G +RK RG DI AACGQL
Sbjct: 345 EIIYKAGYASPVRKPRGEDIMAACGQL 371
>gi|260752519|ref|YP_003225412.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|397676167|ref|YP_006517705.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|258551882|gb|ACV74828.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|395396856|gb|AFN56183.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 391
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R KQL W++ G F+ MTD++ ++R L I P +++ QIS DGTRKW+
Sbjct: 54 LRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEHFAISRPEVVTMQISTDGTRKWLLKT 113
Query: 84 KKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
E VFIP+ +R TLCIS+Q+GC +NC FC+TG VRNLTVGEI+GQ+ +
Sbjct: 114 DDGYDYEMVFIPDADRGTLCISSQIGCTLNCRFCNTGTMRLVRNLTVGEIVGQIMLARDS 173
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L + +G R +TN+VMMGMGEPL N+ + ALKL++ LSRR + LSTS
Sbjct: 174 LDEWPS---KPEG-RLLTNVVMMGMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTS 229
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++PM+ + +E V LAVSLHA +R+++VPI+KKY + EL+ AC Y + I
Sbjct: 230 GVVPMMARAGEEIGVNLAVSLHAVTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRI 289
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML ND++ A EL+ L++ ++ K+NLIPFN +PNS CS RI F+
Sbjct: 290 TFEYVMLKDKNDSEEDAHELVRLLQYYRL--PAKVNLIPFNPWPNSPYECSTPERIARFS 347
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
+I+ N+GI +R+ RG DI AACGQL
Sbjct: 348 EIVFNAGISAPVRRTRGQDIMAACGQL 374
>gi|163745013|ref|ZP_02152373.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
gi|161381831|gb|EDQ06240.1| hypothetical protein OIHEL45_05480 [Oceanibulbus indolifex HEL-45]
Length = 393
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 205/327 (62%), Gaps = 5/327 (1%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R Q+ +WI+++GV DF+ MT+L+ R +L I+ P +++ Q S DGTRK++ +
Sbjct: 49 MRVGQIWQWIYQWGVRDFDSMTNLAKGYRAELAEKFVIEVPEVVTRQESEDGTRKYLVRI 108
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ +E V+IPE+ R TLC+S+QVGC + C FC TG Q VRNLT EIIGQ+ V
Sbjct: 109 AGGHEVEVVYIPEEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDD 168
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L ++ R ++NIV+MGMGEPL N+++ A+K+ + LSRR + LSTS
Sbjct: 169 LDEWPETGTRTEEARLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTS 228
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++P I + A E +LAVS HA+ + +RNKLVPI+K++ ++EL+ A Y S I
Sbjct: 229 GVVPEIHRTAAEIGCQLAVSFHATTDEVRNKLVPINKRWNIEELLDALRAYPKVSNSERI 288
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML G+ND+D A L+ L++ KINLIPFN +P S S N+RI+ FA
Sbjct: 289 TFEYVMLKGVNDSDEDAHRLVELIKG----IPAKINLIPFNEWPGSPYERSSNNRIRAFA 344
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
I+ N+G +RK RG DI AACGQL
Sbjct: 345 DIVYNAGYASPVRKPRGEDIMAACGQL 371
>gi|338972590|ref|ZP_08627963.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobiaceae
bacterium SG-6C]
gi|338234375|gb|EGP09492.1| ribosomal RNA large subunit methyltransferase N [Bradyrhizobiaceae
bacterium SG-6C]
Length = 403
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/360 (42%), Positives = 219/360 (60%), Gaps = 21/360 (5%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + E+G + RA+QL W++ G F MT++S +R +L+
Sbjct: 30 SLVGLSRAELSERLGEVGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRAELEKH 89
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV------KKNIIETVFIPEKNRNTLCISTQVGCAIN 112
+ P ++++QIS DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +N
Sbjct: 90 FTVDRPEVVTEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCTLN 149
Query: 113 CIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ---GKRQITNIVMMGMGE 169
C FC TG Q VRNLT GEI+GQ+ V +L N I+ + G R +TNIVMMGMGE
Sbjct: 150 CSFCHTGTQRLVRNLTAGEIVGQIMVARDRL----NDWIDRETPNGNRLVTNIVMMGMGE 205
Query: 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNN 229
PL N+ + AL ++ + G+SRR + LSTSG++P I + E V LA+SLHA +
Sbjct: 206 PLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIARTGDEIGVMLAISLHAVRDE 265
Query: 230 LRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKN 289
LRN+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 266 LRNELVPLNRKYPIKELLEACRAYPGSSNSRRITFEYVMLKGVNDSLDDARLLVKLLKG- 324
Query: 290 KILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 325 ---IPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1]
Length = 319
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/308 (47%), Positives = 201/308 (65%), Gaps = 13/308 (4%)
Query: 50 SLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGC 109
LR KL+ I+AP + +Q S DGT KW V +ETV+IPE +R TLC+S+QVGC
Sbjct: 1 GLRAKLQRVTEIRAPEVQKEQRSVDGTIKWAIKVGDQQVETVYIPEADRATLCVSSQVGC 60
Query: 110 AINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMG 168
A+ C FCST +QGF RNL V EIIGQ+W R K I + S G R ITN+VMMGMG
Sbjct: 61 ALECKFCSTAQQGFNRNLRVSEIIGQVW------RAAKIIGSLKSTGTRPITNVVMMGMG 114
Query: 169 EPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNN 228
EPLLN + + A+ +++ D +GLS+R V LSTSG++P +DKL V LA+SLHA +
Sbjct: 115 EPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPTD 174
Query: 229 NLRNKLVPISKKYPLKELILACHRYITYSPRH--MITFEYCMLHGINDTDIHAIELISLM 286
++R+++VPI++KY ++ + A RY+ S + +T EY ML IND+ A +L +
Sbjct: 175 DIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLAECL 234
Query: 287 RKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAAC 346
+ T CKINLIP+N FP + S NSR+ F+K+LM G +RK RG+DI+AAC
Sbjct: 235 KD----TPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMEYGFTTIVRKTRGDDIDAAC 290
Query: 347 GQLSGKIL 354
GQL+G+++
Sbjct: 291 GQLAGEVI 298
>gi|384214221|ref|YP_005605384.1| hypothetical protein BJ6T_04980 [Bradyrhizobium japonicum USDA 6]
gi|354953117|dbj|BAL05796.1| hypothetical protein BJ6T_04980 [Bradyrhizobium japonicum USDA 6]
Length = 400
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 218/361 (60%), Gaps = 18/361 (4%)
Query: 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ++G P R +QL W++ G F+ MT +S +R +L
Sbjct: 28 SLIGLSRSELADRLGKIGVAPAQRKMRVQQLWHWLYFRGAQSFDDMTSISKGIRAELAQH 87
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +
Sbjct: 88 FTVDRPEVVAEQISNDGTRKWLLRLPSGDNVERAHEVECVYIPETDRGTLCVSSQVGCTL 147
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + G R++TNIVMMGMGEPL
Sbjct: 148 NCSFCHTGTQRLVRNLTAGEIVGQVMVARDRL---NDWADREDGTRRVTNIVMMGMGEPL 204
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 205 YNFDAVRDALLIVGDNEGIGISRRRITLSTSGVVPNIVRAGEEIGVMLAISLHAVRDELR 264
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 265 NELVPLNRKYPIKELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG--- 321
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
KINLIPFN +P + CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 322 -IHAKINLIPFNPWPGTAYECSDWDQIEKFSEYIFNAGYSSPVRTPRGRDILAACGQLKS 380
Query: 352 K 352
+
Sbjct: 381 E 381
>gi|384411217|ref|YP_005620582.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335931591|gb|AEH62131.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 391
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R KQL W++ G F+ MTD++ ++R L I P +++ QIS DGTRKW+
Sbjct: 54 LRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEHFAISRPEVVTMQISTDGTRKWLLKT 113
Query: 84 KKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
E VFIP+ +R TLCIS+Q+GC +NC FC+TG VRNLTVGEI+GQ+ +
Sbjct: 114 DDGYDYEMVFIPDADRGTLCISSQIGCTLNCRFCNTGTMRLVRNLTVGEIVGQIMLARDS 173
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L + +G R +TN+VMMGMGEPL N+ + ALKL++ LSRR + LSTS
Sbjct: 174 LDEWPS---KPEG-RLLTNVVMMGMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTS 229
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++PM+ + +E V LAVSLHA +R+++VPI+KKY + EL+ AC Y + I
Sbjct: 230 GVVPMMARAGEEIGVNLAVSLHAVTKAVRDEIVPINKKYGIDELLAACAAYPGVNNARRI 289
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML ND++ A EL+ L++ ++ K+NLIPFN +PNS CS RI F+
Sbjct: 290 TFEYVMLKDKNDSEEDAHELVRLLQYYRL--PAKVNLIPFNPWPNSPYECSTPERIARFS 347
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
+I+ N+GI +R+ RG DI AACGQL
Sbjct: 348 EIVFNAGISAPVRRTRGQDIMAACGQL 374
>gi|427409979|ref|ZP_18900181.1| ribosomal RNA large subunit methyltransferase N [Sphingobium
yanoikuyae ATCC 51230]
gi|425712112|gb|EKU75127.1| ribosomal RNA large subunit methyltransferase N [Sphingobium
yanoikuyae ATCC 51230]
Length = 419
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 206/341 (60%), Gaps = 18/341 (5%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R+KQL W++ G +DF KMTDL+ +R + + P ++ Q+S DGTRKW+
Sbjct: 58 LRSKQLFHWLYHRGETDFEKMTDLAKPMRLWMAERFIVGRPQVVEAQVSNDGTRKWLLRS 117
Query: 84 KKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+ +
Sbjct: 118 DDGQDYEMVFIPDADRGTLCVSSQVGCTLNCSFCHTGTMRLVRNLTPGEIVGQVMLARDA 177
Query: 143 L--------------RREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDH 188
L +++ + + G R +TNIVMMGMGEPL N+ ALKL++
Sbjct: 178 LGEWPKGSMASANDDETDEDSQYTADG-RMLTNIVMMGMGEPLYNFDHVRDALKLVMDGD 236
Query: 189 AYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248
LS+R + LSTSG++PM+ + A+E V LAVSLHA +R++LVP+++KY ++EL+
Sbjct: 237 GLALSKRRITLSTSGVVPMMARAAEEIGVNLAVSLHAVTKEVRDELVPLNRKYGIEELLQ 296
Query: 249 ACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 308
AC Y + ITFEY M+ ND+D A EL+ L+RK K+ K+NLIPFN +P +
Sbjct: 297 ACADYPKANNARRITFEYVMIKDKNDSDADAHELVRLIRKYKL--PAKVNLIPFNPWPGT 354
Query: 309 NLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+ CS RI+ F+ I+ GI +R RG DI AACGQL
Sbjct: 355 DYECSSPERIRAFSTIVFEGGISAPVRTPRGRDIMAACGQL 395
>gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
Length = 391
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 205/327 (62%), Gaps = 5/327 (1%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R Q+ +WI+ +GV DF+ MT+LS R L + I P +++ Q+S DGTRK++ +
Sbjct: 49 MRVGQIWQWIYHWGVRDFSAMTNLSKDYRAMLAETFVIALPEVVTRQVSDDGTRKYLVRI 108
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ +E V+IPE +R TLCIS+QVGC + C FC TG Q VRNLT EIIGQ+ +
Sbjct: 109 AGGHEVEVVYIPETDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMIARDD 168
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L ++ R ++NIV+MGMGEPL N+++ A+K+ + LSRR + LSTS
Sbjct: 169 LDEWPEPGTRTEDTRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTS 228
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++P I + AQE +LAVS HA+ N++R++LVPI+K++P+ +L+ A Y S I
Sbjct: 229 GVVPEIARTAQEIGCQLAVSFHATTNDVRDRLVPINKRWPISDLLDALREYPKVSNSERI 288
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML G+ND+D A LI L+ KINLIPFN +P + S N+RI+ F+
Sbjct: 289 TFEYVMLDGVNDSDEDAHRLIKLIEG----IPAKINLIPFNEWPGAPYKRSSNNRIRKFS 344
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
+I+ +G +RK RG DI AACGQL
Sbjct: 345 EIIYQAGYASPVRKPRGEDIMAACGQL 371
>gi|414169431|ref|ZP_11425268.1| ribosomal RNA large subunit methyltransferase N [Afipia
clevelandensis ATCC 49720]
gi|410886190|gb|EKS34003.1| ribosomal RNA large subunit methyltransferase N [Afipia
clevelandensis ATCC 49720]
Length = 403
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 154/360 (42%), Positives = 219/360 (60%), Gaps = 21/360 (5%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + E+G + RA+QL W++ G F MT++S +R +L+
Sbjct: 30 SLVGLSRAELSERLGEVGVPEKQRKMRAQQLWHWMYVRGAQTFADMTNVSKDMRAELEKH 89
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV------KKNIIETVFIPEKNRNTLCISTQVGCAIN 112
+ P ++++QIS DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +N
Sbjct: 90 FTVDRPEVVTEQISNDGTRKWLLRLPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCTLN 149
Query: 113 CIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ---GKRQITNIVMMGMGE 169
C FC TG Q VRNLT GEI+GQ+ V +L N I+ + G R +TNIVMMGMGE
Sbjct: 150 CSFCHTGTQRLVRNLTAGEIVGQIMVARDRL----NDWIDRETPNGNRLVTNIVMMGMGE 205
Query: 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNN 229
PL N+ + AL ++ + G+SRR + LSTSG++P I + E V LA+SLHA +
Sbjct: 206 PLYNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIARTGDEIGVMLAISLHAVRDE 265
Query: 230 LRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKN 289
LRN+LVP+++KYP+KEL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 266 LRNELVPLNRKYPIKELLDACRAYPGSSNSRRITFEYVMLKGVNDSLDDARLLVKLLKG- 324
Query: 290 KILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 325 ---IPAKINLIPFNPWPGSKYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|381200110|ref|ZP_09907253.1| hypothetical protein SyanX_06485 [Sphingobium yanoikuyae XLDN2-5]
Length = 423
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 206/341 (60%), Gaps = 18/341 (5%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R+KQL W++ G +DF KMTDL+ +R + + P ++ Q+S DGTRKW+
Sbjct: 62 LRSKQLFHWLYHRGETDFEKMTDLAKPMRLWMAERFIVGRPQVVEAQVSNDGTRKWLLRS 121
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+ +
Sbjct: 122 DDGQDYEMVFIPDADRGTLCVSSQVGCTLNCSFCHTGTMRLVRNLTPGEIVGQVMLARDA 181
Query: 143 L--------------RREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDH 188
L +++ + + G R +TNIVMMGMGEPL N+ ALKL++
Sbjct: 182 LGEWPKGSMASANDDETDEDSQYTADG-RMLTNIVMMGMGEPLYNFDHVRDALKLVMDGD 240
Query: 189 AYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248
LS+R + LSTSG++PM+ + A+E V LAVSLHA +R++LVP+++KY ++EL+
Sbjct: 241 GLALSKRRITLSTSGVVPMMARAAEEIGVNLAVSLHAVTKEVRDELVPLNRKYGIEELLQ 300
Query: 249 ACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 308
AC Y + ITFEY M+ ND+D A EL+ L+RK K+ K+NLIPFN +P +
Sbjct: 301 ACADYPKANNARRITFEYVMIKDKNDSDADAHELVRLIRKYKL--PAKVNLIPFNPWPGT 358
Query: 309 NLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+ CS RI+ F+ I+ GI +R RG DI AACGQL
Sbjct: 359 DYECSSPERIRAFSTIVFEGGISAPVRTPRGRDIMAACGQL 399
>gi|407975494|ref|ZP_11156399.1| radical SAM protein [Nitratireductor indicus C115]
gi|407429122|gb|EKF41801.1| radical SAM protein [Nitratireductor indicus C115]
Length = 408
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 203/337 (60%), Gaps = 15/337 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R +QL W++ GVSDF +M ++S LR L + I P I+ +QIS DGTRKW+
Sbjct: 51 MRVRQLWHWLYVRGVSDFTQMFNISKDLRAALDETFTIARPEIVEEQISEDGTRKWLMRF 110
Query: 84 KKN------IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 137
+ETV+IPE+ R TLCIS+QVGC + C FC TG Q VRNLT GEI+ QL
Sbjct: 111 PPRGAGRPVEVETVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQKMVRNLTSGEILDQLL 170
Query: 138 VT-----EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
V +F + I R++TNIVMMGMGEPL N+++ AL + L
Sbjct: 171 VARDRLGDFPDADTPDGAIVPAEGRKVTNIVMMGMGEPLYNFENVKKALLVASDGDGLSL 230
Query: 193 SRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252
S+R + LSTSG++P I + +E V LA+SLHA ++LRN+LVPI+KKYPLKEL+ AC
Sbjct: 231 SKRRITLSTSGVVPEIYRTGEEIGVMLAISLHAVRDDLRNELVPINKKYPLKELLDACRA 290
Query: 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
Y S ITFEY ML G+ND+ A EL+ L++ KINLIPFN +P S C
Sbjct: 291 YPGLSNARRITFEYVMLKGVNDSLEDARELVRLLKG----IPAKINLIPFNPWPGSAYEC 346
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
S +I+ FA ++ +G IR RG DI AACGQL
Sbjct: 347 SDWEQIEEFADVVNRAGYASPIRTPRGRDILAACGQL 383
>gi|365888213|ref|ZP_09427000.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. STM 3809]
gi|365336119|emb|CCD99531.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. STM 3809]
Length = 403
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/358 (42%), Positives = 214/358 (59%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + E+G + R +QL W++ G F++MT +S R L
Sbjct: 29 SLIGLSRAELAARLGEIGVPERQQKMRVQQLWHWLYFRGAQSFDEMTSVSKDTRNGLAER 88
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 89 FTVDRPEVVAEQISNDGTRKWLLRLPSGDDLQKAHEVECVYIPETDRGTLCVSSQVGCTL 148
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R +TNIVMMGMGEPL
Sbjct: 149 NCAFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWAD-RETPHGNRLVTNIVMMGMGEPL 207
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 208 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIKRAGEEIGVMLAISLHAVRDELR 267
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+ EL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 268 NELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDARLLVKLLKG--- 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 325 -IPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
>gi|56551928|ref|YP_162767.1| Cfr family radical SAM enzyme [Zymomonas mobilis subsp. mobilis
ZM4]
gi|81355066|sp|Q5NNQ4.1|RLMN_ZYMMO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56543502|gb|AAV89656.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 391
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/327 (45%), Positives = 205/327 (62%), Gaps = 7/327 (2%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R KQL W++ G F+ MTD++ ++R L I P +++ QIS DGTRKW+
Sbjct: 54 LRTKQLWHWMYNRGAVAFDGMTDIAKTMRPWLAEHFAISRPEVVTMQISTDGTRKWLLKT 113
Query: 84 KKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
E VFIP+ +R TLCIS+Q+GC +NC FC+TG VRNLTVGEI+GQ+ +
Sbjct: 114 DDGYDYEMVFIPDADRGTLCISSQIGCTLNCRFCNTGTMRLVRNLTVGEIVGQIMLARDS 173
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L + +G R +TN+VMMGMGEPL N+ + ALKL++ LSRR + LSTS
Sbjct: 174 LDEWPS---KPEG-RLLTNVVMMGMGEPLYNFDNVRDALKLVMDGDGIALSRRRITLSTS 229
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++PM+ + +E V LAVSLHA +R+++VPI+KKY + EL+ AC Y + I
Sbjct: 230 GVVPMMARAGEEIGVNLAVSLHAVTKVVRDEIVPINKKYGIDELLAACAAYPGVNNARRI 289
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML ND++ A EL+ L++ ++ K+NLIPFN +PNS CS RI F+
Sbjct: 290 TFEYVMLKDKNDSEEDAHELVRLLQYYRL--PAKVNLIPFNPWPNSPYECSTPERIARFS 347
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
+I+ N+GI +R+ RG DI AACGQL
Sbjct: 348 EIVFNAGISAPVRRTRGQDIMAACGQL 374
>gi|209883455|ref|YP_002287312.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
gi|337739466|ref|YP_004631194.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM5]
gi|386028485|ref|YP_005949260.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM4]
gi|209871651|gb|ACI91447.1| radical SAM enzyme, Cfr family [Oligotropha carboxidovorans OM5]
gi|336093553|gb|AEI01379.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM4]
gi|336097130|gb|AEI04953.1| ribosomal RNA large subunit methyltransferase N [Oligotropha
carboxidovorans OM5]
Length = 404
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/357 (42%), Positives = 219/357 (61%), Gaps = 15/357 (4%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + + ELG + RA+QL W++ G F +M+++S +R +L
Sbjct: 31 SLIGLSRDELMARLGELGVADKQRKMRAQQLWHWMYVRGARSFEEMSNVSKDMRAQLAAH 90
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV------KKNIIETVFIPEKNRNTLCISTQVGCAIN 112
+ P ++++Q+S DGTRKW+ + + + +E V+IPE +R TLC+S+QVGC +N
Sbjct: 91 FTVDRPEVVAEQVSNDGTRKWLLRMPGDGVGRAHEVECVYIPETDRGTLCVSSQVGCTLN 150
Query: 113 CIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172
C FC TG Q VRNLT GEI+GQ+ V +L + + G R +TN+VMMGMGEPL
Sbjct: 151 CSFCHTGTQRLVRNLTAGEIVGQVMVARDRLNDWVD-RETPNGNRLVTNVVMMGMGEPLY 209
Query: 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRN 232
N+ + ALK++ GLSRR + LSTSG++P I ++ +E V LA+SLHA + LRN
Sbjct: 210 NFDAVRDALKIMSDGEGIGLSRRRITLSTSGVVPNIARIGEETGVMLAISLHAVRDELRN 269
Query: 233 KLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
+LVP+++KYP+ +L+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 270 ELVPLNRKYPIAQLLDACRNYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG---- 325
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 326 IPAKINLIPFNPWPGSVYECSDWEQIEQFSEYVFNAGYSSPVRTPRGRDILAACGQL 382
>gi|357026242|ref|ZP_09088346.1| hypothetical protein MEA186_15852 [Mesorhizobium amorphae
CCNWGS0123]
gi|355541857|gb|EHH11029.1| hypothetical protein MEA186_15852 [Mesorhizobium amorphae
CCNWGS0123]
Length = 410
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 203/337 (60%), Gaps = 15/337 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
RA+QL W++ GVSDF M ++S LR +L + P I+ +QIS DGTRKW+F
Sbjct: 52 MRAQQLWHWMYVRGVSDFAGMFNISKDLRAELDKHFTVARPEIVEEQISADGTRKWLFRF 111
Query: 84 KKN------IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLW 137
IETV+IPE+ R TLCIS+QVGC + C FC TG Q VRNLTV EI+ QL
Sbjct: 112 PPRGAGRPVEIETVYIPEEGRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTVEEILAQLL 171
Query: 138 VT-----EFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
+F R + I R+++NIVMMGMGEPL N+++ AL + L
Sbjct: 172 TARDRLGDFPDRDTPDGAIVPAEGRKVSNIVMMGMGEPLYNFEAVKKALLIASDGDGLSL 231
Query: 193 SRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252
S+R + LSTSG++P I + +E V LA+SLHA+N++LR+ LVPI+KKYPLKELI AC
Sbjct: 232 SKRRITLSTSGVVPEIFRTGEEIGVMLAISLHATNDDLRDLLVPINKKYPLKELIAACRA 291
Query: 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312
Y S ITFEY ML +ND+ A LI L++ KINLIPFN +P +N C
Sbjct: 292 YPGLSNAKRITFEYVMLKDVNDSIDDAKGLIKLLKG----IPAKINLIPFNPWPGTNYQC 347
Query: 313 SKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
S I+ FA + N+G IR RG DI AACGQL
Sbjct: 348 SDWETIEKFADYINNAGYASPIRTPRGRDILAACGQL 384
>gi|398385118|ref|ZP_10543144.1| 23S rRNA methyltransferase [Sphingobium sp. AP49]
gi|397721209|gb|EJK81758.1| 23S rRNA methyltransferase [Sphingobium sp. AP49]
Length = 419
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 204/340 (60%), Gaps = 16/340 (4%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R+KQL W++ G +DF KMTDL+ +R + + P ++ Q+S DGTRKW+
Sbjct: 58 LRSKQLFHWLYHRGETDFEKMTDLAKPMRLWMAERFIVGRPQVVEAQVSNDGTRKWLLRS 117
Query: 84 KKN-IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
E VFIP+ +R TLC+S+QVGC +NC FC TG VRNLT GEI+GQ+ +
Sbjct: 118 DDGQDYEMVFIPDADRGTLCVSSQVGCTLNCSFCHTGTMRLVRNLTPGEIVGQVMLARDA 177
Query: 143 LRR----------EKNIKINSQ---GKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHA 189
L + +SQ R +TNIVMMGMGEPL N+ ALKL++
Sbjct: 178 LGEWPKGSMASANDDETDDDSQYTADGRMLTNIVMMGMGEPLYNFDHVRDALKLVMDGDG 237
Query: 190 YGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILA 249
LS+R + LSTSG++PM+ + A+E V LAVSLHA +R++LVP+++KY ++EL+ A
Sbjct: 238 LALSKRRITLSTSGVVPMMARAAEEIGVNLAVSLHAVTKEVRDELVPLNRKYGIEELLQA 297
Query: 250 CHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309
C Y + ITFEY M+ ND+D A EL+ L+RK K+ K+NLIPFN +P ++
Sbjct: 298 CADYPKANNARRITFEYVMIKDKNDSDADAHELVRLIRKYKL--PAKVNLIPFNPWPGTD 355
Query: 310 LICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
CS RI+ F+ I+ GI +R RG DI AACGQL
Sbjct: 356 YECSSPERIRAFSTIVFEGGISAPVRTPRGRDIMAACGQL 395
>gi|338707241|ref|YP_004661442.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294045|gb|AEI37152.1| radical SAM enzyme, Cfr family [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 411
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 214/352 (60%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+LL LS + KE G + R KQL W++ G +F MTD++ ++R L
Sbjct: 48 DLLGLSRDQIRQALKEAGLEEKQAKLRTKQLWHWMYNRGAVEFEVMTDIAKTMRPWLAER 107
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCS 117
I P +++ QIS DGTRKW+ + E VFIP+ +R TLC+S+Q+GC +NC FC+
Sbjct: 108 FVISRPEVVTAQISVDGTRKWLLKTDDGHDYEMVFIPDADRGTLCVSSQIGCTLNCRFCN 167
Query: 118 TGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
TG VRNL+VGEI+GQ+ + L + +G R +TN+VMMGMGEPL N+ +
Sbjct: 168 TGTMKLVRNLSVGEIVGQIMLARDSLGEWPS---KPEG-RLLTNVVMMGMGEPLYNFDNV 223
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
ALKL++ LSRR + LST+G++P++ + +E V LAVSLHA +R+++VPI
Sbjct: 224 RDALKLVMDGDGIALSRRRITLSTAGVVPLMARAGEEMGVNLAVSLHAVTKTVRDEIVPI 283
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKY ++EL+ AC Y + ITFEY ML ND++ A EL+ L+R ++ K+
Sbjct: 284 NKKYGIEELLAACAAYPGVNNARRITFEYVMLKDKNDSEEDAHELVRLLRYYRL--PAKV 341
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
NLIPFN +P S CS RI F+ I+ +GI +R+ RG DI AACGQL
Sbjct: 342 NLIPFNAWPESPYECSPAERIARFSDIIFEAGISAPVRRTRGQDIMAACGQL 393
>gi|83941897|ref|ZP_00954359.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
gi|83847717|gb|EAP85592.1| radical SAM enzyme, Cfr family protein [Sulfitobacter sp. EE-36]
Length = 391
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 204/327 (62%), Gaps = 5/327 (1%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
R Q+ +WI+++G DF MT+LS + R +L I+ P +++ Q+S DGTRK++ +
Sbjct: 49 MRVGQIWQWIYQWGTRDFADMTNLSKAFRAELAEKFVIEVPEVVTKQVSEDGTRKYLVRI 108
Query: 84 KK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFK 142
+ +E V+IPE+ R TLC+S+QVGC + C FC TG Q VRNLT EIIGQ+ V
Sbjct: 109 AGGHEVEVVYIPEEGRGTLCVSSQVGCTLTCSFCHTGTQKLVRNLTAAEIIGQVMVARDD 168
Query: 143 LRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202
L + R ++NIV+MGMGEPL N+++ A+K+ + LSRR + LSTS
Sbjct: 169 LGEWPVPGTLTDAPRLLSNIVLMGMGEPLYNFENVRDAMKIAMDPEGIQLSRRRITLSTS 228
Query: 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMI 262
G++P I + A+E +LAVS HA+ + +RNKLVPI+K++ + ELI A Y S I
Sbjct: 229 GVVPEIARTAEEIGCQLAVSFHATTDEVRNKLVPINKRWNIAELIKALRAYPKVSNSERI 288
Query: 263 TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322
TFEY ML G+ND+D A LI L+R KINLIPFN +P + S N+RI+ F+
Sbjct: 289 TFEYVMLDGVNDSDADAHRLIELIRG----IPAKINLIPFNEWPGAPYKRSSNNRIRAFS 344
Query: 323 KILMNSGIFVTIRKIRGNDINAACGQL 349
+I+ +G +RK RG DI AACGQL
Sbjct: 345 EIVYQAGYASPVRKPRGEDIMAACGQL 371
>gi|365884037|ref|ZP_09423117.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 375]
gi|365287402|emb|CCD95648.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Bradyrhizobium sp. ORS 375]
Length = 403
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/358 (42%), Positives = 214/358 (59%), Gaps = 16/358 (4%)
Query: 3 NLLDLSPLKFVNYCKELG----EMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNS 58
+L+ LS + ++G + R +QL W++ G F++MT +S R L
Sbjct: 29 SLIGLSRAELAARLGDIGVPERQQKMRVQQLWHWLYFRGAQSFDEMTSVSKDTRSGLAER 88
Query: 59 VYIKAPHIMSDQISFDGTRKWIFHV-------KKNIIETVFIPEKNRNTLCISTQVGCAI 111
+ P ++++QIS DGTRKW+ + K + +E V+IPE +R TLC+S+QVGC +
Sbjct: 89 FTVDRPEVVAEQISNDGTRKWLLRLPSGDGLQKAHEVECVYIPETDRGTLCVSSQVGCTL 148
Query: 112 NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171
NC FC TG Q VRNLT GEI+GQ+ V +L + + G R ITNIVMMGMGEPL
Sbjct: 149 NCSFCHTGTQRLVRNLTAGEIVGQIMVARDRLNDWAD-RETPHGNRLITNIVMMGMGEPL 207
Query: 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLR 231
N+ + AL ++ + G+SRR + LSTSG++P I + +E V LA+SLHA + LR
Sbjct: 208 YNFDAVRDALLIVSDNEGIGISRRRITLSTSGVVPNIRRAGEEIGVALAISLHAVRDELR 267
Query: 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI 291
N+LVP+++KYP+ EL+ AC Y S ITFEY ML G+ND+ A L+ L++
Sbjct: 268 NELVPLNRKYPIAELLQACRDYPGASNARRITFEYVMLKGVNDSLDDAKLLVKLLKG--- 324
Query: 292 LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
KINLIPFN +P S CS +I+ F++ + N+G +R RG DI AACGQL
Sbjct: 325 -IPAKINLIPFNPWPGSAYECSDWEQIEKFSEYVFNAGYSSPVRTPRGRDILAACGQL 381
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,141,820,550
Number of Sequences: 23463169
Number of extensions: 202046565
Number of successful extensions: 555876
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 535857
Number of HSP's gapped (non-prelim): 4021
length of query: 354
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 211
effective length of database: 9,003,962,200
effective search space: 1899836024200
effective search space used: 1899836024200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)