BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9577
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6SZX3|RLMN_JANMA Dual-specificity RNA methyltransferase RlmN OS=Janthinobacterium
sp. (strain Marseille) GN=rlmN PE=3 SV=1
Length = 387
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 228/354 (64%), Positives = 284/354 (80%), Gaps = 3/354 (0%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+TNLLDL P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KL
Sbjct: 4 LTNLLDLDPAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATRAI 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I AP ++SD S DGTRKW+ V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 64 IAAPAVISDHTSADGTRKWLVDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+VGE+IGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLNY+ T+
Sbjct: 124 KQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVT 183
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
ALKL+L D+AYGLSRR V LSTSG++PMIDKL+Q+C V LAVSLHASN+ LR+ LVP++K
Sbjct: 184 ALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNK 243
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR +TFEYCML G+ND+D HA ELI+L+R+ + CK NL
Sbjct: 244 KYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVRQADV--PCKFNL 301
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N RIK FA++LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 302 IPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQLAGEV 355
>sp|A4G4J9|RLMN_HERAR Dual-specificity RNA methyltransferase RlmN OS=Herminiimonas
arsenicoxydans GN=rlmN PE=3 SV=1
Length = 386
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 223/346 (64%), Positives = 276/346 (79%), Gaps = 5/346 (1%)
Query: 9 PLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMS 68
P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KLK I AP ++S
Sbjct: 13 PAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVIS 72
Query: 69 DQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNL 127
D S DGTRKW+ V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG+QGF RNL
Sbjct: 73 DHTSSDGTRKWLIDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132
Query: 128 TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSD 187
+VGEIIGQLW+ EF+LRR K I+ +G+RQITN+VMMGMGEPLLNY+ T+ ALKL+L D
Sbjct: 133 SVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDD 192
Query: 188 HAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 247
+AYGLSRR V LSTSG++PMIDKL+Q+C V LAVSLHASN+ LR+ LVP++KKYPL+EL+
Sbjct: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELM 252
Query: 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307
AC RY+ ++PR +TFEYCML G+ND+D HA EL++L+R CK NLIPFN FP
Sbjct: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRD----VPCKFNLIPFNPFPE 308
Query: 308 SNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
S L S N RIK FA++LM+ G+ TIRK RG+DI+AACGQL+G++
Sbjct: 309 SGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEV 354
>sp|B2JIV3|RLMN_BURP8 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=rlmN PE=3 SV=1
Length = 382
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 266/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAAGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRASIT 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPPVVSDHISSDGTRKWLVDVGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNL GEIIGQL + EF LR + + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLGTGEIIGQLRMAEFALRASRGTAGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA N+ LR++LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPNDALRDELV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ HA EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S L+ SK+ +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLLRSKSEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>sp|Q2SWE6|RLMN_BURTA Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGGLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL++L R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLALTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLLRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|B2SXT2|RLMN_BURPP Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=rlmN PE=3 SV=1
Length = 383
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 205/358 (57%), Positives = 264/358 (73%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDNISTDGTRKWLIDVGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT EIIGQL + EF LR + I + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTAEIIGQLRMAEFALRASRGIDGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL++L R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLALTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVVTTVRKTRGDDIDAACGQLAGAV 361
>sp|Q63UT5|RLMN_BURPS Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
pseudomallei (strain K96243) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|A3NA56|RLMN_BURP6 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
pseudomallei (strain 668) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|Q3JRQ1|RLMN_BURP1 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
pseudomallei (strain 1710b) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|A3NVX3|RLMN_BURP0 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
pseudomallei (strain 1106a) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|A1V4K3|RLMN_BURMS Dual-specificity RNA methyltransferase RlmN OS=Burkholderia mallei
(strain SAVP1) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|Q62JW2|RLMN_BURMA Dual-specificity RNA methyltransferase RlmN OS=Burkholderia mallei
(strain ATCC 23344) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|A2S2A0|RLMN_BURM9 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia mallei
(strain NCTC 10229) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|A3MK77|RLMN_BURM7 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia mallei
(strain NCTC 10247) GN=rlmN PE=3 SV=1
Length = 378
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 266/356 (74%), Gaps = 7/356 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL V YC LGE FRAKQLQ+WIH++ +DF+ MTDL+ SLR+KLK
Sbjct: 6 IVNLLDLDAEGLVAYCGSLGEKAFRAKQLQRWIHQYNAADFDGMTDLAKSLREKLKGRAV 65
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I P I+SD +S DGTRKW+ +V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 66 IGTPDILSDHVSADGTRKWLINVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTG 125
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
+QGF RNL+ GEI+GQL + EF LR + N + +R ITN+VMMGMGEPLLNY +
Sbjct: 126 KQGFSRNLSTGEIVGQLRMAEFALRASLGRAPGPNGKAERVITNVVMMGMGEPLLNYSAV 185
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP+
Sbjct: 186 VPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPL 245
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KK+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK
Sbjct: 246 NKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKF 301
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L+ SK +IK FA++L+++G+ TIRK RG+DI+AACGQL+G +
Sbjct: 302 NLIPFNPFPESGLVRSKTEQIKRFAQVLIDAGVVTTIRKTRGDDIDAACGQLAGAV 357
>sp|Q13X26|RLMN_BURXL Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
xenovorans (strain LB400) GN=rlmN PE=3 SV=1
Length = 383
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 265/358 (74%), Gaps = 11/358 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL V YC LGE PFRA+QLQ+WIH++ +DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDLDAQGLVAYCDSLGEKPFRARQLQRWIHQYNAADFDGMTDLAKSLREKLKGRATIS 67
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I+SD IS DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPGIVSDHISTDGTRKWLIDVGNSNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI------NSQGKRQITNIVMMGMGEPLLNYK 175
GF RNLT GEIIGQL + EF LR + + + +G+R +TN+VMMGMGEPLLNY
Sbjct: 128 GFSRNLTTGEIIGQLRMAEFALRASRGVDGGRATGGDGKGERVVTNVVMMGMGEPLLNYD 187
Query: 176 STIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV 235
+ + A++L+L D+AYGLSRR V LSTSG++PM+D+L + PV LAVSLHA ++ LR+ LV
Sbjct: 188 AVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLPVALAVSLHAPSDPLRDMLV 247
Query: 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSC 295
P++KKYPL+EL+ AC RY+ +PR ITFEYCML G+ND++ A EL+++ R C
Sbjct: 248 PLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAVTRD----VPC 303
Query: 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
K NLIPFN FP S LI SK +IK FA++LM++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 KFNLIPFNPFPESGLIRSKPEQIKRFAQVLMDAGVITTVRKTRGDDIDAACGQLAGAV 361
>sp|B4EAX1|RLMN_BURCJ Dual-specificity RNA methyltransferase RlmN OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=rlmN PE=3 SV=1
Length = 379
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|Q39FQ7|RLMN_BURS3 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia sp.
(strain 383) GN=rlmN PE=3 SV=1
Length = 379
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDPLRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|A0K7T8|RLMN_BURCH Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
cenocepacia (strain HI2424) GN=rlmN PE=3 SV=1
Length = 379
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|B1JT94|RLMN_BURCC Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
cenocepacia (strain MC0-3) GN=rlmN PE=3 SV=1
Length = 379
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|Q1BGX6|RLMN_BURCA Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
cenocepacia (strain AU 1054) GN=rlmN PE=3 SV=1
Length = 379
Score = 447 bits (1150), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPDIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYSAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|Q46ZI0|RLMN_CUPPJ Dual-specificity RNA methyltransferase RlmN OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=rlmN PE=3
SV=1
Length = 384
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH+FG S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHQFGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P ++D +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRSPAAITDNLSADGTRKWLLDVGNGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNLT GEIIGQLW+ EF +R + + + R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLTTGEIIGQLWMAEFAMREQ--LGRGPKDDRVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>sp|Q1LLI8|RLMN_RALME Dual-specificity RNA methyltransferase RlmN OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=rlmN PE=3 SV=1
Length = 384
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/355 (56%), Positives = 265/355 (74%), Gaps = 7/355 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH+FG S F+ MTDL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHQFGASHFDAMTDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I++P +SD S DGTRKW+ V N +ETV+IPE R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRSPAAISDHTSSDGTRKWLLDVGAGNAVETVYIPEDTRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + +R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMRAQ--LGRGPKDERVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP+++
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNR 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G+++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEVM 352
>sp|A4JEP2|RLMN_BURVG Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=rlmN PE=3 SV=1
Length = 379
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRATIG 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|Q8Y032|RLMN_RALSO Dual-specificity RNA methyltransferase RlmN OS=Ralstonia
solanacearum (strain GMI1000) GN=rlmN PE=3 SV=1
Length = 383
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M NLLD + YC+ LGE FRAKQLQ+WIH+ G +DF +MTDL+ SLR+KL
Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEI+GQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIVGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+Q+ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND+ HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>sp|B1YR46|RLMN_BURA4 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
ambifaria (strain MC40-6) GN=rlmN PE=3 SV=1
Length = 379
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSADGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|Q0BEW5|RLMN_BURCM Dual-specificity RNA methyltransferase RlmN OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=rlmN PE=3 SV=1
Length = 379
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 261/354 (73%), Gaps = 7/354 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V YC LGE PFRAKQLQ+WIH++ DF+ MTDL+ SLR+KLK I
Sbjct: 8 NLLDFDAEGLVAYCGSLGEKPFRAKQLQRWIHQYNAGDFDGMTDLAKSLREKLKGRASIV 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P I SD +S DGTRKW+ V N +ETVFIPE+ R TLC+S+Q GCA+NC FCSTG+Q
Sbjct: 68 MPEIASDHVSTDGTRKWLIDVGNGNAVETVFIPEETRGTLCVSSQAGCAVNCRFCSTGKQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRRE--KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
GF RNL+ EIIGQL + EF LR + N + +R +TN+VMMGMGEPLLNY + +
Sbjct: 128 GFSRNLSTAEIIGQLRMAEFALRASLGRAPGPNGKAERVVTNVVMMGMGEPLLNYNAVVP 187
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L E PV LAVSLHA N+ LR++LVP++K
Sbjct: 188 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELPVALAVSLHAPNDALRDELVPLNK 247
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
K+PL+EL+ AC RY+ +PR ITFEYCML G+NDT+ HA EL+++ R CK NL
Sbjct: 248 KHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAVTRD----VPCKFNL 303
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S LI SK +IK FA++L+++G+ T+RK RG+DI+AACGQL+G +
Sbjct: 304 IPFNPFPESGLIRSKPEQIKRFAQVLIDAGVVTTVRKTRGDDIDAACGQLAGAV 357
>sp|Q0K959|RLMN_CUPNH Dual-specificity RNA methyltransferase RlmN OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=rlmN PE=3 SV=1
Length = 384
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/354 (56%), Positives = 265/354 (74%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLDL YC ELGE PFRA+QLQ+WIH +G S F+ M+DL+ SLR+KL
Sbjct: 4 LVNLLDLDADALTAYCGELGEKPFRARQLQRWIHHYGASRFDAMSDLAKSLREKLATRAE 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++D +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IRAPAAITDHLSADGTRKWLLDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R + + + R I+N+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMREQ--LGRGPKDDRVISNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
A++L+L D+AYGLSRR V LSTSG++PM+D+L+++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+ND HA EL+ L+ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKLVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ FA++LM++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNDQIRRFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>sp|B2U9U6|RLMN_RALPJ Dual-specificity RNA methyltransferase RlmN OS=Ralstonia pickettii
(strain 12J) GN=rlmN PE=3 SV=1
Length = 383
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/354 (57%), Positives = 266/354 (75%), Gaps = 7/354 (1%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ NLLD + YC+ LGE FRAKQLQ+WIH+ G S+F +MTDL+ SLR+KL
Sbjct: 4 VVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGASEFGEMTDLAKSLREKLATRAN 63
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
I+AP ++SD +S DGTRKW+ V + N +ETV+IPE+ R TLC+S+Q GCA+NC FCSTG
Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGQGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123
Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
+QGF RNL+ GEIIGQLW+ EF +R K + + R ITN+VMMGMGEPLLNY + +
Sbjct: 124 KQGFSRNLSTGEIIGQLWMAEFAMR--KQLGRGPKDDRVITNVVMMGMGEPLLNYDAVVP 181
Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
AL L+L D+AYGLSRR V +STSG++PM+D+LA++ PV LAVSLHASN+ LR+ LVP++K
Sbjct: 182 ALALMLDDNAYGLSRRRVTVSTSGVVPMMDRLARDVPVALAVSLHASNDALRDVLVPLNK 241
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
KYPL EL+ AC RY+ ++PR ITFEYCML G+NDT HA EL+ ++ CK NL
Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDTVEHARELLRVVAD----VPCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S N +I+ F+++L+++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>sp|A4SYE2|RLMN_POLSQ Dual-specificity RNA methyltransferase RlmN OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=rlmN PE=3 SV=1
Length = 402
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/362 (55%), Positives = 258/362 (71%), Gaps = 14/362 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + Y L E PFRAKQL +WIH+ GVSD N M+DL+ S R L + V +
Sbjct: 7 NLLDFDADQMAAYVAGLNEKPFRAKQLMQWIHQRGVSDINDMSDLAKSFRATLLDKVEVL 66
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+ ++ D+ + DGTRKW+ V N +E+VFIPE +R TLCIS+Q GCA+NC FCSTGRQ
Sbjct: 67 SLPVIKDEHATDGTRKWLLDVGAGNAVESVFIPEDDRGTLCISSQAGCAVNCRFCSTGRQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-----KINSQG----KRQITNIVMMGMGEPLL 172
GF RNLT GEIIGQLW E LR + K + G R I+N+VMMGMGEPLL
Sbjct: 127 GFSRNLTSGEIIGQLWFAEHLLRNDPEAIRRIEKYPTPGWEHTGRVISNVVMMGMGEPLL 186
Query: 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRN 232
NY + + AL+L+L D AYGLSRR V +STSG++PMID+LAQ+CPV LAVSLHA N+ LR+
Sbjct: 187 NYDNVVSALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCPVALAVSLHAPNDALRD 246
Query: 233 KLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL 292
+LVP+++KYPL+EL+ AC RY+ ++PR +TFEYCML G+ND+DI A EL+ L+R K
Sbjct: 247 QLVPLNQKYPLRELLDACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRLLRNIK-- 304
Query: 293 TSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
CKINLIPFN FP S L S R+ FA IL+++G+ T+RK RG+DI AACGQL+G
Sbjct: 305 --CKINLIPFNPFPESGLKRSSAQRVNAFAGILLDAGMVATVRKTRGDDIAAACGQLAGD 362
Query: 353 IL 354
++
Sbjct: 363 VV 364
>sp|Q3SL73|RLMN_THIDA Dual-specificity RNA methyltransferase RlmN OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=rlmN PE=3 SV=1
Length = 372
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 194/357 (54%), Positives = 257/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + E GE PFRA+Q+ WIH+ GV+DF +MTD++ SLR+KL+N ++
Sbjct: 4 NLLDFDLAGLTAWFGERGEKPFRARQVFHWIHQAGVTDFAQMTDIAKSLREKLQNEAVVQ 63
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I +S DGTRKW+F V N IETVFIPE +R TLC+S+QVGCA+ C FCSTGRQ
Sbjct: 64 APAINFAHLSADGTRKWLFDVGVGNGIETVFIPEDDRGTLCVSSQVGCALECTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-----KRQITNIVMMGMGEPLLNYKS 176
GF RNLTV EI+GQLWV + L+RE N + G +R +TN+VMMGMGEPL N+++
Sbjct: 124 GFNRNLTVAEIVGQLWVAQHSLKREPNRTASDHGAGEIAERPVTNVVMMGMGEPLANFEN 183
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL ++L DHAYGLSRR V +STSG++P +D+LA+ CPV LAVSLHA N+ LR+++VP
Sbjct: 184 VVTALGVMLDDHAYGLSRRRVTVSTSGLVPAMDRLAERCPVALAVSLHAPNDALRDQIVP 243
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
I++KYPL EL+ AC RY+ ++PR ITFEY ML G+ND HA +LI+L R CK
Sbjct: 244 INRKYPLAELMAACRRYLVHAPRDFITFEYVMLAGVNDQPEHARQLIALTRD----VPCK 299
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP+S + +++F +IL ++G VT RK RG+DI+AACGQL+G++
Sbjct: 300 FNLIPFNPFPDSGYEKPRAEAMRVFREILQDAGYVVTTRKTRGDDIDAACGQLAGRV 356
>sp|A1K3Y6|RLMN_AZOSB Dual-specificity RNA methyltransferase RlmN OS=Azoarcus sp. (strain
BH72) GN=rlmN PE=3 SV=1
Length = 375
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 195/357 (54%), Positives = 254/357 (71%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD V++ LGE PFRA+Q+ +W+H+ G DF++MTD++ SLR KLK I+
Sbjct: 6 NLLDFDVDGLVDWFAGLGEKPFRARQVMRWMHREGCDDFDQMTDVAKSLRAKLKEIAVIR 65
Query: 63 APHIMSDQISFDGTRKWIFHV-KKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + D +S DGTRKW+ V N +ETVFIPE NR TLC+S+Q GCA++C FCSTG+Q
Sbjct: 66 PPVPVRDSVSSDGTRKWLLDVGNANAVETVFIPETNRGTLCVSSQAGCALDCAFCSTGKQ 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNLT EIIGQLW+ L ++ + + R I+N+VMMGMGEPL N+ +
Sbjct: 126 GFNRNLTAAEIIGQLWLANKLLGAARDAAADLEAGEKDNGRIISNVVMMGMGEPLANFDN 185
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L DHAYGLSRR V +STSGI+P ID+L ECPV LAVSLHASN+ LR++LVP
Sbjct: 186 VVTALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECPVALAVSLHASNDALRDRLVP 245
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
I++KYPL+EL+ AC RY+ +PR ITFEY ML G+ND + HA ELI+L+R CK
Sbjct: 246 INQKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHARELIALVRD----VPCK 301
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FPNS S RI+ FA IL+++GI T RK RG+D++AACGQL+G++
Sbjct: 302 FNLIPFNPFPNSGFQRSNAERIRRFAGILLDAGIVTTTRKTRGDDVDAACGQLAGQV 358
>sp|A9BMV6|RLMN_DELAS Dual-specificity RNA methyltransferase RlmN OS=Delftia acidovorans
(strain DSM 14801 / SPH-1) GN=rlmN PE=3 SV=2
Length = 374
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 190/354 (53%), Positives = 257/354 (72%), Gaps = 6/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD YC++LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KLK +I
Sbjct: 3 TNLLDFDLDGLAAYCEQLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLKACAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
A ++++ +S DGT KW+F V + +E VFIPE +R TLC+S+Q GCA+ C FCSTG
Sbjct: 63 TALPVLTEHVSADGTVKWLFDVGGGDAVEAVFIPEDDRGTLCVSSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E LR+ ++ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLSTGEILAQLWYAEHSLRK----RLGTGGERVISNVVMMGMGEPLQNYTALVPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PMID+L+Q+C V +AVSLHA N+ LR+ LVP+++K
Sbjct: 179 LRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDCAVAMAVSLHAPNDELRDPLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINL 299
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + + CK NL
Sbjct: 239 YPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIELVRARGDGRSWCKFNL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S +R+ FA +L N+GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 IPFNPFPASGLLRSPAARVTEFASLLSNAGIVTTVRKTRGDDIDAACGQLAGDV 352
>sp|A1W574|RLMN_ACISJ Dual-specificity RNA methyltransferase RlmN OS=Acidovorax sp.
(strain JS42) GN=rlmN PE=3 SV=1
Length = 374
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 192/355 (54%), Positives = 253/355 (71%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD +C+ LGE FRA QL +WIH+ G SDF++M+DL+ SLR+KL+ ++
Sbjct: 3 TNLLDFDLDGLAAFCERLGEKRFRATQLFRWIHQRGASDFDQMSDLAKSLREKLRGCAHV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+S+ +S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 AGLQAISEHVSADGTVKWLFDVGDGNAVETVFIPEDDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + G+R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFSRNLTTGEILAQLWYAEHALRQRRG-----DGERVISNVVMMGMGEPLQNYAALVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR+ LVP+++K
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDVLRDNLVPLNRK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL--TSCKIN 298
YPL EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+ + SCK N
Sbjct: 238 YPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDLVGRKAADGGVSCKFN 297
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S + + FA++L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 LIPFNPFPASGLRRSPPAAVTAFAQLLSDAGIVTTVRKTRGDDIDAACGQLAGDV 352
>sp|Q2KY87|RLMN_BORA1 Dual-specificity RNA methyltransferase RlmN OS=Bordetella avium
(strain 197N) GN=rlmN PE=3 SV=1
Length = 382
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/356 (55%), Positives = 252/356 (70%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + + G PFRA+QLQ+W+H+ V F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDAKALTDLVGQWGGKPFRARQLQRWVHQRSVDSFDAMTDLARDFRAQLSERAIIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + +Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNIEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLW----VTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
GF RNL EIIGQLW V E + + ++ R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRTSEIIGQLWWAKRVLEADIGSARLANAGAEDTRVISNVVMMGMGEPLLNYDQV 187
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ AL+L+L D+ YGLSRR V +STSG++PM+D+LAQ+CPV LAVSLHA N+ LR+ LVP+
Sbjct: 188 LPALRLMLDDNGYGLSRRRVTVSTSGVVPMMDRLAQDCPVALAVSLHAPNDALRDDLVPL 247
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKYPLKEL+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK+
Sbjct: 248 NKKYPLKELLAACERYLAHAPRDFITFEYCMLDGINDTDQHAKELIQLARQVR----CKL 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 NLIPFNPFPASGLKRSAAPRVKVFAQRLMDAGIITTVRKTRGDDIDAACGQLAGEV 359
>sp|Q47BR3|RLMN_DECAR Dual-specificity RNA methyltransferase RlmN OS=Dechloromonas
aromatica (strain RCB) GN=rlmN PE=3 SV=1
Length = 364
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/352 (55%), Positives = 254/352 (72%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD + E GE PFRAKQ+ +WIH+ GV+DF+ MTD++ SLR+KLK +
Sbjct: 4 NLLDFDGESLTAWFAEQGEKPFRAKQVLRWIHRSGVADFDAMTDIAKSLREKLKAKAVVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD++S DGTRK++ V N +ETVFIPE +R TLCISTQ GCA++C FCSTG+Q
Sbjct: 64 PPAVVSDKLSDDGTRKFLIDVGNGNAVETVFIPEDDRGTLCISTQAGCALDCAFCSTGKQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQLW L +R I+N+V+MGMGEPL N+++++ AL
Sbjct: 124 GFNRNLSVAEIIGQLWQANHALGAVHG------DERVISNVVLMGMGEPLANFENSVAAL 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
KL+L D+AYGLSRR + +STSG++P++D+L ECPV LAVSLHA N+ LR++LVPI++KY
Sbjct: 178 KLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECPVALAVSLHAPNDKLRDQLVPINQKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
PLKEL+ AC RY+ +PR ITFEY ML GINDTD HA EL++L++ CK NLIP
Sbjct: 238 PLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLALVKS----VHCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FP S S R++ FA ILM +GI T RK RG+DI+AACGQL+G++
Sbjct: 294 FNPFPGSPFRRSPAERVRHFADILMQAGIVTTTRKTRGDDIDAACGQLAGQV 345
>sp|Q12AB5|RLMN_POLSJ Dual-specificity RNA methyltransferase RlmN OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=rlmN PE=3 SV=1
Length = 382
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/354 (55%), Positives = 250/354 (70%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C+ LGE FRA QL +WIH+ G SDF +MTDL+ SLR+KL S +I
Sbjct: 3 ANLLDYDLEGLAAFCEGLGEKRFRATQLFRWIHQKGASDFGQMTDLARSLREKLAGSAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P ++S S DGT KW+F V ++IE VFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 QGPKVVSRHDSADGTIKWLFDVGAGDVIEAVFIPETDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEI+ QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLTTGEIVSQLWFAEHFLRQHLGRQ-----ERVISNVVMMGMGEPLQNYSQLVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PMID+LA++CPV LAVSLHA + LR+ LVP++KK
Sbjct: 178 LRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRDSLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT-SCKINL 299
YP+ EL+ AC RY +PR ITFEYCML G+ND HA +L++LM+ + SCK NL
Sbjct: 238 YPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVALMQNHSAGGLSCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S ++ FAKILM++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLKRSAMPQVAAFAKILMDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>sp|Q7VWK8|RLMN_BORPE Dual-specificity RNA methyltransferase RlmN OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=rlmN
PE=3 SV=1
Length = 382
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
++KKYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>sp|Q7WHM8|RLMN_BORBR Dual-specificity RNA methyltransferase RlmN OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=rlmN PE=3 SV=1
Length = 382
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CPV LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>sp|A9IK57|RLMN_BORPD Dual-specificity RNA methyltransferase RlmN OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rlmN
PE=3 SV=1
Length = 381
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/356 (54%), Positives = 255/356 (71%), Gaps = 9/356 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + + G PFRA+QLQ+WIH+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSDLVGQWGGKPFRARQLQRWIHQRGADSFDAMTDLARDFRGQLAQQCRIQ 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLC+S+Q GCA+NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCVSSQAGCAVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGK---RQITNIVMMGMGEPLLNYKST 177
GF RNLT EIIGQLW + L + ++ G R ++N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLTSSEIIGQLWWAKRVLEADAGTARLGGAGNDDTRVVSNVVMMGMGEPLLNYDQL 187
Query: 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPI 237
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+++CPV LAVSLHA + LR++LVP+
Sbjct: 188 LPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCPVALAVSLHAPTDALRDELVPL 247
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+KKYPL EL+ AC RY+ +PR ITFEYCML GINDTD HA LI + R+ + CK+
Sbjct: 248 NKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHARALIQVARQVR----CKL 303
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
NLIPFN FP S L S ++R+K+FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 NLIPFNPFPASGLKRSPSARVKVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 359
>sp|A1VNF1|RLMN_POLNA Dual-specificity RNA methyltransferase RlmN OS=Polaromonas
naphthalenivorans (strain CJ2) GN=rlmN PE=3 SV=1
Length = 382
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/354 (55%), Positives = 256/354 (72%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD +C++LG+ FRA QL +WIH+ G SDF +MTDL+ SLR+KL S +I
Sbjct: 3 TNLLDFDLEGLAAFCEQLGQKRFRATQLFRWIHQKGASDFEQMTDLAKSLREKLAVSAHI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ +++S S DGT KW+F V ++IETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 QGLNVVSRHESADGTIKWLFDVGAGDVIETVFIPETDRGTLCISSQAGCAVGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT GEII QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLTTGEIISQLWFAEHFLRKHLG-----RNERVISNVVMMGMGEPLQNYSQLLPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
LK++L+DH YGLSRR V +STSG++PMID+LA++CPV LAVSLHA + LR+ LVP++KK
Sbjct: 178 LKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCPVALAVSLHAPQDALRSNLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI-LTSCKINL 299
YP+ EL+ AC RY + +PR ITFEYCML G+ND HA +L++LM+ + SCK NL
Sbjct: 238 YPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVALMKTHAANGLSCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L+ S ++ FAKILM++GI T+RK RG+DI+AACGQL+G +
Sbjct: 298 IPFNPFPASGLLRSDMPQVMAFAKILMDAGIITTVRKTRGDDIDAACGQLAGDV 351
>sp|Q7W6P5|RLMN_BORPA Dual-specificity RNA methyltransferase RlmN OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=rlmN PE=3 SV=1
Length = 382
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/357 (54%), Positives = 253/357 (70%), Gaps = 10/357 (2%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL L + G PFRA+QLQ+W+H+ G F+ MTDL+ R +L I+
Sbjct: 8 NLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIE 67
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A + ++Q S DGTRKW+F V + N IETVFIPE +R TLCIS+Q GC +NC FCSTG Q
Sbjct: 68 ALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQ 127
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-----RQITNIVMMGMGEPLLNYKS 176
GF RNL EIIGQLW + L + GK R I+N+VMMGMGEPLLNY
Sbjct: 128 GFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKAGEDTRVISNVVMMGMGEPLLNYDQ 187
Query: 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236
+ AL+L+L D+AYGLSRR V +STSG++PM+D+L+Q+CP+ LAVSLHA N+ LR++LVP
Sbjct: 188 VLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPLALAVSLHAPNDALRDELVP 247
Query: 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK 296
+++KYPL L+ AC RY+ ++PR ITFEYCML GINDTD HA ELI L R+ + CK
Sbjct: 248 LNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVR----CK 303
Query: 297 INLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
+NLIPFN FP S L S ++R+++FA+ LM++GI T+RK RG+DI+AACGQL+G++
Sbjct: 304 LNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEV 360
>sp|A1WE19|RLMN_VEREI Dual-specificity RNA methyltransferase RlmN OS=Verminephrobacter
eiseniae (strain EF01-2) GN=rlmN PE=3 SV=1
Length = 391
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/353 (53%), Positives = 249/353 (70%), Gaps = 8/353 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ ++C LGE FRA QL +WIH+ G SDF+ M+DL+ +LR KLK +
Sbjct: 4 TNLLEFDRDGLADFCARLGEKRFRATQLFRWIHQRGASDFDAMSDLARALRDKLKGCARV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+AP ++S Q S DG+ KW+F V N +E VFIPE R TLC+S+Q GCA+ C FCSTG
Sbjct: 64 QAPPVISGQASADGSVKWLFDVGAGNAVEAVFIPEDERGTLCVSSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEII QLW E LRR + R I+N+VMMGMGEPL N + + A
Sbjct: 124 QGFSRNLSSGEIIAQLWFAEHALRRRLKTE-----DRVISNLVMMGMGEPLQNLAALLPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PMID+LA++CPV LAVSLHA N+ LR++LVP+++K
Sbjct: 179 LRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCPVALAVSLHAPNDALRDQLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YP+ EL+ AC RY+ ++PR ITFEYCML G+ND HA +L+ L+ + I CK NLI
Sbjct: 239 YPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVELVGRAAI--RCKFNLI 296
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L+ S + +I FA++L +GI T+RK RG+DI AACGQL+G +
Sbjct: 297 PFNPFPASGLLRSAHDQILAFAQVLGAAGIVTTVRKTRGDDIAAACGQLAGDV 349
>sp|Q1H0U6|RLMN_METFK Dual-specificity RNA methyltransferase RlmN OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rlmN
PE=3 SV=1
Length = 362
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 251/352 (71%), Gaps = 11/352 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ + Y + +GE PFRAKQ+ +W+H FGVSDF +MTD++ +LR+KL +
Sbjct: 4 NLLNFNQAALAEYFQGIGEKPFRAKQMMRWMHHFGVSDFGEMTDIAKALREKLAKEAVVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +QIS DGTRKW+ V N +ETVFIPE +R TLC+S+QVGCA++C FCSTGRQ
Sbjct: 64 PPSVHLEQISEDGTRKWLIDVGAGNGVETVFIPEDDRGTLCVSSQVGCALDCTFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL+V EIIGQLWV L R+ +G R I+N+VMMGMGEPL N+ + + A+
Sbjct: 124 GFNRNLSVSEIIGQLWVANKALGRD------PKGDRIISNVVMMGMGEPLANFDNVVAAM 177
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D AYGLSRR V LSTSG++P +D+L +ECPV LAVSLHA N+ LR+++VPI++KY
Sbjct: 178 NIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECPVALAVSLHAPNDALRDEIVPINRKY 237
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ +L+ AC RY+ +PR +TFEY ML G+NDT HA +L+++++ CK NLIP
Sbjct: 238 PIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNIVQD----VPCKFNLIP 293
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS SK I+ F ILM +G VT RK RG DI+AACGQL+GK+
Sbjct: 294 FNPFPNSGYDTSKPDNIRRFRDILMQAGYVVTTRKTRGEDIDAACGQLAGKV 345
>sp|Q2Y6F3|RLMN_NITMU Dual-specificity RNA methyltransferase RlmN OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=rlmN
PE=3 SV=1
Length = 365
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/353 (54%), Positives = 250/353 (70%), Gaps = 7/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C E+GE PFRA+QL +WIH+ G +DF+ M+DL+ LR+KL + I+
Sbjct: 4 NLLDFDAKGLTGFCAEIGEKPFRARQLLRWIHRTGEADFDAMSDLAKGLREKLAAAAVIE 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++SD + DGTRKW+ V N IETV+IPE +R TLCIS+QVGCA+ C FCSTGRQ
Sbjct: 64 PPKVISDHTASDGTRKWLLSVGAGNGIETVYIPETSRGTLCISSQVGCALACAFCSTGRQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EIIGQLW L + + +R ITNIVMMGMGEPL N+++ + +L
Sbjct: 124 GFNRNLTVAEIIGQLWWANKAL--TETFTSEAGRERPITNIVMMGMGEPLTNFENVVTSL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L+L D+AYGLSRR V +STSGIIP +D+L + CPV LAVSLHA N+ LR++LVPI++KY
Sbjct: 182 DLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERCPVALAVSLHAPNDALRDQLVPINRKY 241
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P++EL+ AC RY+ +PR ITFEY ML G+ND+ A EL+ L+R CK+NLIP
Sbjct: 242 PIRELLGACERYLQSAPRDFITFEYVMLDGVNDSVAQARELVQLVRD----IPCKLNLIP 297
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
FN FP+S S + + F +LM +G+ T+RK RG+DI AACGQL+GK+L
Sbjct: 298 FNPFPDSGFRRSSANAVSRFRDVLMEAGLVTTVRKTRGDDIAAACGQLAGKVL 350
>sp|Q7NS85|RLMN_CHRVO Dual-specificity RNA methyltransferase RlmN OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rlmN PE=3 SV=1
Length = 364
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 187/353 (52%), Positives = 248/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + + + E+GE PFRAKQ+ +W+H+ DF+ MTDL+ SLR KL +
Sbjct: 3 TNLLDFNLDQLTQHFAEMGEKPFRAKQVMRWMHQMAEDDFDAMTDLAKSLRAKLHERAEV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M+ Q S DGTRKW+ V N +ETVFIPE +R TLC+S+QVGCA+ C FCSTGR
Sbjct: 63 RVPSLMTGQASSDGTRKWLLDVGTGNGVETVFIPEDDRGTLCVSSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K + + + +R ++N+VMMGMGEPL N+ + + A
Sbjct: 123 QGFNRNLSTAEIIGQLWWAN------KAMGVTPKNERVVSNVVMMGMGEPLANFDNVVSA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L DH YGLSRR V LSTSG++P +D+L +ECPV LAVSLHA N+ +R+ +VPI+KK
Sbjct: 177 MQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECPVALAVSLHAPNDAIRDVIVPINKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL EL+ AC RY+ +PR ITFEY ML G+ND HA +L+ L+R CK NLI
Sbjct: 237 YPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLELVRD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N+ I+IF +IL G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYDRSSNNAIRIFREILQEQGYVVTVRKTRGDDIDAACGQLAGQV 345
>sp|A1TM24|RLMN_ACIAC Dual-specificity RNA methyltransferase RlmN OS=Acidovorax citrulli
(strain AAC00-1) GN=rlmN PE=3 SV=1
Length = 373
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 254/353 (71%), Gaps = 7/353 (1%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD +C++LGE FRA QL +WIH+ G SDF +M+DL+ SLR+KL ++
Sbjct: 4 NLLDFDLDGLAAFCEQLGEKRFRAVQLFRWIHQRGASDFARMSDLAKSLREKLSGCAHVA 63
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
A ++S+ +S DGT KW+F V N +E+VFIPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 64 ALPVISEHVSADGTVKWLFDVGDGNAVESVFIPEDDRGTLCISSQAGCAVGCRFCSTGHQ 123
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT GEI+ QLW E LR ++ +Q +R I+N+VMMGMGEPL NY + + AL
Sbjct: 124 GFSRNLTSGEIVAQLWFAEHALR----ARLGTQ-ERVISNVVMMGMGEPLQNYTALVPAL 178
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+ +L DH YGLSRR + +STSG++PM+D+L+Q+C V +AVSLHA N+ LR++LVP+++KY
Sbjct: 179 RTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDCAVAMAVSLHAPNDALRDQLVPLNRKY 238
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMR-KNKILTSCKINLI 300
PL+EL+ AC RY+ ++PR ITFEYCML G+ND HA +LI L+R + CK NLI
Sbjct: 239 PLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDLVRPRGGEGVRCKFNLI 298
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FP S L S ++ FAK+L ++GI T+RK RG+DI+AACGQL+G +
Sbjct: 299 PFNPFPASGLHRSNPQQVAAFAKMLSDAGIVTTVRKTRGDDIDAACGQLAGDV 351
>sp|C1DD41|RLMN_LARHH Dual-specificity RNA methyltransferase RlmN OS=Laribacter
hongkongensis (strain HLHK9) GN=rlmN PE=3 SV=1
Length = 366
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 249/353 (70%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLLD + + +GE PFRAKQ+ +W+H+ G +DF+ MTDL+ SLR KL ++ +
Sbjct: 3 TNLLDFTLPALTEHFAAMGEKPFRAKQVMRWMHQMGQNDFDAMTDLAKSLRAKLHDTATV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
P +M +Q S DGTRKW+ V N +ETVFIPE +R TLC+S+QVGCA+ C FCSTGR
Sbjct: 63 TVPSLMLEQASSDGTRKWLLDVGTGNRVETVFIPEDDRGTLCVSSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ EIIGQLW K++ + + +R I+N+VMMGMGEPL NY + + A
Sbjct: 123 QGFNRNLSTAEIIGQLWWAN------KSMGVTPKNERVISNVVMMGMGEPLANYDNVVAA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
++++L DH YGLSRR V LSTSG++P +D+L ++CPV LAVSLHA N+ +R+++VPI+KK
Sbjct: 177 MRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCPVALAVSLHAPNDRIRDEIVPINKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPL+EL+ AC RY+ +PR +TFEY ML IND HA EL++L+R CK NLI
Sbjct: 237 YPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVALVRD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS + N+ ++ F IL +G T+RK RG DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYGRASNNAVRAFRDILAEAGYITTVRKTRGEDIDAACGQLAGQV 345
>sp|A2SHB8|RLMN_METPP Dual-specificity RNA methyltransferase RlmN OS=Methylibium
petroleiphilum (strain PM1) GN=rlmN PE=3 SV=1
Length = 394
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 183/355 (51%), Positives = 252/355 (70%), Gaps = 8/355 (2%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLL+ +C++LGE FRA QL +WIH+ G SDF +M+DL+ SLR+KL +
Sbjct: 4 ANLLEFDLDALAAFCEQLGEKRFRATQLFRWIHQKGQSDFAQMSDLAKSLREKLAGRAVV 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ ++S+ +S DGT KW+F V N +ETVFIPE +R TLCIS+Q GCA+ C FCSTG
Sbjct: 64 RPLAVLSEHVSADGTVKWLFDVGGGNAVETVFIPENDRGTLCISSQAGCAVGCRFCSTGH 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL+ GEI+ QLW E +LR +R I+N+VMMGMGEPL NY + + A
Sbjct: 124 QGFSRNLSTGEIVAQLWHAEHQLRARLGTT-----ERVISNVVMMGMGEPLQNYAALLPA 178
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+++L DH YGLSRR V +STSG++PMID+L ++CPV LAVSLHA + LR+ LVP+++K
Sbjct: 179 LRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCPVALAVSLHAPTDALRDDLVPLNRK 238
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKIL--TSCKIN 298
YP+ EL+ AC RY+ +PR ITFEYCML G+ND++ A EL+ L+ + + CKIN
Sbjct: 239 YPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELLRLVGERGPVGRVPCKIN 298
Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
LIPFN FP S L S +R++ FA++L++ G+ T+R+ RG+DI+AACGQL+G++
Sbjct: 299 LIPFNPFPASGLTRSSVARVQAFAQLLVDGGLVTTVRRTRGDDIDAACGQLAGEV 353
>sp|Q21W25|RLMN_RHOFD Dual-specificity RNA methyltransferase RlmN OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=rlmN PE=3 SV=1
Length = 382
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/354 (54%), Positives = 251/354 (70%), Gaps = 7/354 (1%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD +C+ LGE +RA QL +WIH+ G S+F+ M+DL+ SLR+KLK S +
Sbjct: 3 ANLLDFDLDGLAVFCERLGEKRYRAVQLFRWIHQKGASNFDDMSDLAKSLREKLKVSAQV 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
KAP ++S IS DGT KW+F V + +E VFIPE++R TLCIS+Q GCA+ C FCSTG
Sbjct: 63 KAPDLISQHISSDGTIKWLFDVGGGDAVEAVFIPEEDRGTLCISSQAGCAMGCRFCSTGH 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNL GEII QLW E LR+ + +R I+N+VMMGMGEPL NY + A
Sbjct: 123 QGFSRNLKTGEIIAQLWFAEHFLRKHLQ-----RDERVISNVVMMGMGEPLQNYAELVPA 177
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L+ +L DH YGLSRR V +STSG++PM+D+LA++CPV LAVSLHA N+ LR+ LVP++KK
Sbjct: 178 LRAMLDDHGYGLSRRRVTVSTSGVVPMMDRLARDCPVALAVSLHAPNDLLRDDLVPLNKK 237
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRK-NKILTSCKINL 299
Y L EL+ AC+RY+ Y+PR ITFEYCML +ND HA +L+ L++ + CK NL
Sbjct: 238 YSLAELLNACNRYLAYAPRDFITFEYCMLEDVNDQPEHAQQLVRLVQHYSSGGVWCKFNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN FP S L S RI+ FAKIL ++GI TIRK RG+DI+AACGQL+G++
Sbjct: 298 IPFNPFPASGLTRSTPERIQAFAKILSDAGIVTTIRKTRGDDIDAACGQLAGEV 351
>sp|B1XXL6|RLMN_LEPCP Dual-specificity RNA methyltransferase RlmN OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=rlmN PE=3 SV=1
Length = 393
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 251/362 (69%), Gaps = 11/362 (3%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLD YC++LGE FRA QL +WIH+ G +DF +M+DL+ SLR KL + I
Sbjct: 5 NLLDFDLDALAAYCEQLGEKRFRAVQLFRWIHQRGAADFGQMSDLAKSLRSKLADVACIA 64
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
++S+ S DGT KW+F V N +ETV+IPE +R TLCIS+Q GCA+ C FCSTG Q
Sbjct: 65 PLRVLSEHRSSDGTIKWLFDVGDGNAVETVYIPEDDRATLCISSQAGCAVGCRFCSTGHQ 124
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREK--NIKINSQG------KRQITNIVMMGMGEPLLN 173
GF RNL+ EI+ QLW E LRRE+ + + ++ +R I+N+VMMGMGEPL N
Sbjct: 125 GFSRNLSTAEILAQLWYAEHSLRRERAEGVSVGARAATGPASERIISNVVMMGMGEPLQN 184
Query: 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNK 233
Y + + AL+++L DH YGLSRR V +STSG++PMID+LA + PV LAVSLHA ++ LR+
Sbjct: 185 YAAVLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAADLPVALAVSLHACDDALRDV 244
Query: 234 LVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT 293
LVP+++KYPL EL+ AC Y+ +PR ITFEYCML G+ND+D A L+ L+ +
Sbjct: 245 LVPLNRKYPLAELLGACQAYLASAPRDFITFEYCMLDGVNDSDEQARALLKLVGDKGPVG 304
Query: 294 --SCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG 351
CK NLIPFN FP S L S N R++ FA++L++ G+ T+RK RG+DI+AACGQL+G
Sbjct: 305 RLPCKFNLIPFNPFPESGLKRSGNERVQAFAQVLIDGGLVTTVRKTRGDDIDAACGQLAG 364
Query: 352 KI 353
++
Sbjct: 365 EV 366
>sp|A1KUD6|RLMN_NEIMF Dual-specificity RNA methyltransferase RlmN OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=rlmN PE=3 SV=1
Length = 364
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 245/353 (69%), Gaps = 11/353 (3%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
TNLL+ + ++GE PFRAKQ+ +W+H+ G +FN+MTDL+ SLR KL I
Sbjct: 3 TNLLNYDLQGLTRHFADMGEKPFRAKQVMRWMHQSGAQNFNEMTDLAKSLRHKLNEQAGI 62
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
+ P +M Q S DGTRKW+ V N +ETVFIPE +R TLCIS+QVGCA+ C FCSTGR
Sbjct: 63 EIPKLMMSQKSSDGTRKWLLDVGTGNGVETVFIPESDRGTLCISSQVGCALECTFCSTGR 122
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
QGF RNLT EIIGQLW K + + + +R I+N+VMMGMGEP+ N+ + + A
Sbjct: 123 QGFNRNLTAAEIIGQLWWAN------KAMGVTPKNERVISNVVMMGMGEPMANFDNVVTA 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L ++L DH YGLSRR V +STSG++P +D+L PV LAVSLHASN+ +RN++VP++KK
Sbjct: 177 LSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMPVALAVSLHASNDEVRNQIVPLNKK 236
Query: 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300
YPLKEL+ AC RY+ +PR ITFEY ML GIND HA ELI L++ CK NLI
Sbjct: 237 YPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIELVKD----VPCKFNLI 292
Query: 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
PFN FPNS S N I++F IL +G VT+RK RG+DI+AACGQL+G++
Sbjct: 293 PFNPFPNSGYERSSNENIRVFRDILQQAGFVVTVRKTRGDDIDAACGQLAGQV 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,210,584
Number of Sequences: 539616
Number of extensions: 4946628
Number of successful extensions: 17972
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 14574
Number of HSP's gapped (non-prelim): 699
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)