Query psy9577
Match_columns 354
No_of_seqs 299 out of 2039
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:12:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14461 ribosomal RNA large s 100.0 1E-108 2E-113 798.2 24.1 351 1-352 7-364 (371)
2 COG0820 Predicted Fe-S-cluster 100.0 6E-102 1E-106 741.6 23.1 340 1-353 1-343 (349)
3 PRK14459 ribosomal RNA large s 100.0 8E-101 2E-105 749.5 24.4 344 3-352 23-371 (373)
4 PRK11194 ribosomal RNA large s 100.0 1.7E-99 4E-104 741.8 23.4 343 1-352 5-349 (372)
5 PRK14465 ribosomal RNA large s 100.0 2.6E-99 6E-104 732.5 23.9 335 1-353 4-342 (342)
6 PRK14466 ribosomal RNA large s 100.0 9.6E-99 2E-103 727.3 24.0 334 1-353 4-338 (345)
7 PRK14462 ribosomal RNA large s 100.0 6.8E-99 1E-103 733.1 22.4 335 1-353 2-351 (356)
8 PRK14467 ribosomal RNA large s 100.0 1.6E-98 4E-103 730.3 22.8 338 1-353 1-342 (348)
9 PRK14454 ribosomal RNA large s 100.0 1.2E-97 3E-102 724.1 22.9 336 1-353 1-339 (342)
10 PRK14457 ribosomal RNA large s 100.0 3E-97 7E-102 721.2 23.1 333 1-352 1-342 (345)
11 TIGR00048 radical SAM enzyme, 100.0 2.6E-96 6E-101 718.6 24.8 339 1-353 6-346 (355)
12 PRK14460 ribosomal RNA large s 100.0 5.3E-95 1.2E-99 708.6 24.3 340 1-352 1-344 (354)
13 PRK14455 ribosomal RNA large s 100.0 5E-95 1.1E-99 709.7 23.2 337 2-352 11-349 (356)
14 PRK14456 ribosomal RNA large s 100.0 4E-93 8.6E-98 697.2 24.4 340 1-352 17-365 (368)
15 PRK14463 ribosomal RNA large s 100.0 7.1E-93 1.5E-97 692.4 24.5 334 1-353 4-338 (349)
16 PRK14470 ribosomal RNA large s 100.0 5.2E-93 1.1E-97 689.3 22.5 329 4-352 1-334 (336)
17 PRK14453 chloramphenicol/florf 100.0 5.8E-93 1.3E-97 691.6 21.9 331 6-352 4-342 (347)
18 PRK14464 ribosomal RNA large s 100.0 2.7E-92 5.9E-97 682.8 19.5 322 7-352 1-329 (344)
19 PRK14468 ribosomal RNA large s 100.0 4.4E-91 9.5E-96 678.8 22.9 331 2-353 2-334 (343)
20 PRK14469 ribosomal RNA large s 100.0 4.3E-90 9.3E-95 673.6 22.8 334 1-352 1-337 (343)
21 PRK11145 pflA pyruvate formate 100.0 2.1E-32 4.6E-37 255.4 10.9 206 100-333 21-245 (246)
22 PRK10076 pyruvate formate lyas 100.0 7.5E-31 1.6E-35 240.1 8.9 190 116-334 7-211 (213)
23 TIGR01290 nifB nitrogenase cof 100.0 2E-29 4.3E-34 253.6 12.6 202 101-327 26-257 (442)
24 COG1180 PflA Pyruvate-formate 99.9 1.5E-27 3.2E-32 224.8 9.0 216 87-330 23-242 (260)
25 TIGR02493 PFLA pyruvate format 99.9 1.3E-26 2.8E-31 214.7 11.9 214 86-328 3-235 (235)
26 PRK00164 moaA molybdenum cofac 99.9 5.3E-25 1.2E-29 214.1 12.4 206 99-335 17-229 (331)
27 PRK13762 tRNA-modifying enzyme 99.9 8.7E-25 1.9E-29 211.8 11.3 212 105-331 64-294 (322)
28 TIGR02494 PFLE_PFLC glycyl-rad 99.9 1.2E-24 2.6E-29 208.3 7.4 179 124-329 103-295 (295)
29 TIGR03821 AblA_like_1 lysine-2 99.9 1.3E-22 2.7E-27 196.8 11.3 234 69-336 67-311 (321)
30 COG2896 MoaA Molybdenum cofact 99.9 1.3E-22 2.9E-27 194.1 11.0 205 99-335 11-222 (322)
31 PLN02951 Molybderin biosynthes 99.9 3.1E-22 6.6E-27 197.8 12.1 212 85-327 42-261 (373)
32 COG0731 Fe-S oxidoreductases [ 99.9 2.4E-21 5.2E-26 183.3 11.6 203 108-332 33-248 (296)
33 TIGR03278 methan_mark_10 putat 99.8 4E-21 8.8E-26 190.8 9.9 193 112-333 38-248 (404)
34 TIGR02668 moaA_archaeal probab 99.8 7.7E-21 1.7E-25 182.6 11.5 177 99-307 10-190 (302)
35 PRK13361 molybdenum cofactor b 99.8 5E-20 1.1E-24 179.4 12.6 177 100-307 15-196 (329)
36 TIGR02666 moaA molybdenum cofa 99.8 1E-19 2.2E-24 177.3 12.9 179 100-308 11-196 (334)
37 TIGR02495 NrdG2 anaerobic ribo 99.8 2.3E-19 5.1E-24 161.0 9.4 162 98-288 15-181 (191)
38 COG2100 Predicted Fe-S oxidore 99.7 4.1E-17 8.9E-22 153.7 13.6 204 99-327 107-323 (414)
39 PRK05301 pyrroloquinoline quin 99.7 4E-16 8.6E-21 154.6 11.9 194 99-325 16-218 (378)
40 smart00729 Elp3 Elongator prot 99.7 2.5E-16 5.4E-21 140.5 8.8 190 100-310 2-197 (216)
41 TIGR02109 PQQ_syn_pqqE coenzym 99.6 8.5E-16 1.8E-20 151.0 11.3 195 99-324 7-208 (358)
42 TIGR03470 HpnH hopanoid biosyn 99.6 1.8E-15 3.9E-20 146.7 11.9 171 100-306 29-204 (318)
43 TIGR00238 KamA family protein. 99.6 2.5E-14 5.5E-19 139.4 15.1 204 99-336 113-328 (331)
44 PF04055 Radical_SAM: Radical 99.6 4.3E-15 9.3E-20 127.3 6.6 157 104-286 2-166 (166)
45 TIGR03822 AblA_like_2 lysine-2 99.5 3.7E-14 8.1E-19 137.8 12.7 192 100-327 89-292 (321)
46 cd01335 Radical_SAM Radical SA 99.5 3.4E-14 7.4E-19 124.9 9.0 178 105-311 3-187 (204)
47 TIGR03365 Bsubt_queE 7-cyano-7 99.5 3.7E-13 8.1E-18 125.5 11.5 125 107-269 30-160 (238)
48 TIGR03820 lys_2_3_AblA lysine- 99.4 1.1E-12 2.4E-17 130.5 13.6 192 99-327 108-310 (417)
49 PRK13758 anaerobic sulfatase-m 99.4 4.6E-13 9.9E-18 132.2 10.5 160 106-290 12-185 (370)
50 COG0535 Predicted Fe-S oxidore 99.4 1.6E-12 3.6E-17 125.8 12.4 179 98-307 18-200 (347)
51 PRK09240 thiH thiamine biosynt 99.4 1E-12 2.2E-17 130.1 10.4 211 104-340 79-300 (371)
52 PRK07094 biotin synthase; Prov 99.4 1.5E-12 3.2E-17 126.4 10.4 192 104-326 44-244 (323)
53 COG5014 Predicted Fe-S oxidore 99.4 7.9E-13 1.7E-17 115.0 6.1 162 106-298 48-220 (228)
54 TIGR02491 NrdG anaerobic ribon 99.4 3.9E-13 8.4E-18 117.3 3.5 108 107-239 23-147 (154)
55 PRK13745 anaerobic sulfatase-m 99.3 1.4E-11 3E-16 123.7 10.8 179 99-304 13-205 (412)
56 PRK06256 biotin synthase; Vali 99.3 2.1E-11 4.5E-16 119.0 10.9 203 106-340 65-279 (336)
57 TIGR00433 bioB biotin syntheta 99.2 9E-11 2E-15 112.3 12.6 189 106-327 36-237 (296)
58 PRK08508 biotin synthase; Prov 99.2 4.7E-11 1E-15 113.9 9.6 207 105-342 13-230 (279)
59 TIGR01125 MiaB-like tRNA modif 99.2 6.9E-11 1.5E-15 119.3 11.0 186 98-310 134-332 (430)
60 COG1509 KamA Lysine 2,3-aminom 99.2 1.1E-10 2.5E-15 112.4 10.2 202 96-336 110-327 (369)
61 PF13394 Fer4_14: 4Fe-4S singl 99.2 7.7E-12 1.7E-16 103.6 1.8 101 106-224 5-110 (119)
62 COG1313 PflX Uncharacterized F 99.2 8.3E-11 1.8E-15 110.1 8.7 195 107-332 126-331 (335)
63 TIGR02351 thiH thiazole biosyn 99.1 1.3E-10 2.9E-15 114.9 9.3 211 104-340 78-299 (366)
64 PRK14338 (dimethylallyl)adenos 99.1 1.7E-10 3.8E-15 117.3 10.0 185 98-309 154-351 (459)
65 KOG2876|consensus 99.1 2.9E-11 6.4E-16 111.6 2.9 186 98-314 10-201 (323)
66 TIGR02826 RNR_activ_nrdG3 anae 99.1 3.4E-11 7.4E-16 104.3 2.8 100 91-216 8-111 (147)
67 PRK14862 rimO ribosomal protei 99.1 4.9E-10 1.1E-14 113.5 9.8 184 98-309 138-342 (440)
68 COG0641 AslB Arylsulfatase reg 99.1 7.1E-10 1.5E-14 109.8 10.3 171 109-307 18-197 (378)
69 TIGR00089 RNA modification enz 99.0 1.1E-09 2.3E-14 110.6 11.3 186 98-310 138-336 (429)
70 PLN02389 biotin synthase 99.0 1.4E-09 2.9E-14 108.0 11.1 203 106-340 90-307 (379)
71 PRK15108 biotin synthase; Prov 99.0 1.8E-09 3.8E-14 106.1 11.8 201 106-340 50-265 (345)
72 PF13353 Fer4_12: 4Fe-4S singl 99.0 4.9E-11 1.1E-15 101.1 0.7 80 106-206 12-96 (139)
73 TIGR00423 radical SAM domain p 99.0 6.2E-10 1.3E-14 107.7 7.9 198 103-326 9-230 (309)
74 TIGR03551 F420_cofH 7,8-dideme 99.0 8.2E-10 1.8E-14 108.3 8.7 198 103-326 43-265 (343)
75 COG0602 NrdG Organic radical a 99.0 1E-10 2.3E-15 107.2 2.1 85 97-206 21-111 (212)
76 TIGR01579 MiaB-like-C MiaB-lik 99.0 4.1E-09 8.8E-14 105.9 12.0 185 98-309 137-334 (414)
77 TIGR03699 mena_SCO4550 menaqui 99.0 1.1E-09 2.4E-14 107.1 7.8 199 105-326 47-263 (340)
78 PRK05481 lipoyl synthase; Prov 99.0 3.1E-09 6.6E-14 102.0 10.5 199 104-333 58-267 (289)
79 PRK14334 (dimethylallyl)adenos 98.9 7.9E-09 1.7E-13 104.7 12.3 184 97-309 136-333 (440)
80 PRK06245 cofG FO synthase subu 98.9 2.5E-09 5.5E-14 104.5 8.1 199 102-326 15-236 (336)
81 PRK14332 (dimethylallyl)adenos 98.9 8.7E-09 1.9E-13 104.6 11.9 183 99-309 154-347 (449)
82 PRK14326 (dimethylallyl)adenos 98.9 5.7E-09 1.2E-13 107.3 10.7 185 98-309 156-353 (502)
83 TIGR03471 HpnJ hopanoid biosyn 98.9 5.8E-09 1.3E-13 106.5 9.4 179 100-308 197-381 (472)
84 TIGR01578 MiaB-like-B MiaB-lik 98.9 1.1E-08 2.4E-13 103.0 11.3 183 98-309 132-329 (420)
85 PRK14330 (dimethylallyl)adenos 98.9 1.5E-08 3.3E-13 102.4 11.8 185 98-309 139-336 (434)
86 PRK14328 (dimethylallyl)adenos 98.9 1.3E-08 2.7E-13 103.2 11.1 183 98-309 146-343 (439)
87 TIGR02026 BchE magnesium-proto 98.9 6.4E-09 1.4E-13 106.9 8.6 179 102-308 196-381 (497)
88 PRK14331 (dimethylallyl)adenos 98.8 1.9E-08 4.1E-13 101.9 11.7 184 98-309 145-341 (437)
89 PRK14336 (dimethylallyl)adenos 98.8 1.5E-08 3.2E-13 102.0 10.7 186 96-309 121-320 (418)
90 PRK14327 (dimethylallyl)adenos 98.8 2.4E-08 5.2E-13 102.7 12.3 186 97-310 210-409 (509)
91 PRK08446 coproporphyrinogen II 98.8 1.6E-08 3.4E-13 99.5 10.5 200 107-330 8-221 (350)
92 PRK14339 (dimethylallyl)adenos 98.8 2.7E-08 5.9E-13 100.2 11.8 186 97-309 125-326 (420)
93 PRK14325 (dimethylallyl)adenos 98.8 2.6E-08 5.6E-13 101.0 11.5 186 97-309 145-345 (444)
94 PRK14337 (dimethylallyl)adenos 98.8 3.4E-08 7.4E-13 100.3 12.3 185 98-309 147-345 (446)
95 TIGR01574 miaB-methiolase tRNA 98.8 2.4E-08 5.3E-13 101.1 11.0 184 97-309 143-343 (438)
96 PRK05799 coproporphyrinogen II 98.8 2.6E-08 5.7E-13 98.7 11.1 204 100-330 5-229 (374)
97 PRK11121 nrdG anaerobic ribonu 98.8 3.8E-09 8.2E-14 92.2 3.6 111 96-229 14-135 (154)
98 PRK14340 (dimethylallyl)adenos 98.8 1.8E-08 3.9E-13 102.2 9.0 184 98-309 148-344 (445)
99 COG1625 Fe-S oxidoreductase, r 98.8 2.7E-08 5.9E-13 97.7 9.6 162 161-333 81-254 (414)
100 TIGR00539 hemN_rel putative ox 98.8 5.6E-08 1.2E-12 96.0 11.9 203 107-331 8-227 (360)
101 PRK05660 HemN family oxidoredu 98.8 4.1E-08 9E-13 97.6 10.8 208 100-330 8-233 (378)
102 PRK06267 hypothetical protein; 98.8 3E-08 6.6E-13 97.6 9.6 188 106-327 34-232 (350)
103 PRK12928 lipoyl synthase; Prov 98.7 4.4E-08 9.5E-13 94.0 9.8 197 105-333 66-275 (290)
104 PRK14333 (dimethylallyl)adenos 98.7 4E-08 8.7E-13 99.8 9.7 184 99-309 148-351 (448)
105 PRK08207 coproporphyrinogen II 98.7 1E-07 2.2E-12 97.7 12.5 215 97-332 162-399 (488)
106 TIGR01212 radical SAM protein, 98.7 9.2E-08 2E-12 92.3 11.3 197 112-334 39-257 (302)
107 PRK14329 (dimethylallyl)adenos 98.7 6.8E-08 1.5E-12 98.6 10.4 184 98-309 167-369 (467)
108 PRK09249 coproporphyrinogen II 98.7 1.2E-07 2.5E-12 96.6 11.8 210 100-331 51-281 (453)
109 TIGR00538 hemN oxygen-independ 98.7 1.1E-07 2.4E-12 96.8 10.7 210 100-331 51-281 (455)
110 COG0621 MiaB 2-methylthioadeni 98.7 7.6E-08 1.6E-12 96.6 9.3 187 96-309 141-341 (437)
111 PRK14335 (dimethylallyl)adenos 98.7 1.6E-07 3.6E-12 95.5 11.8 184 98-309 151-354 (455)
112 PRK08208 coproporphyrinogen II 98.7 2.1E-07 4.6E-12 94.0 12.1 211 99-331 40-266 (430)
113 TIGR03700 mena_SCO4494 putativ 98.6 7.6E-08 1.7E-12 94.8 8.6 196 103-325 52-271 (351)
114 PRK05628 coproporphyrinogen II 98.6 1.7E-07 3.6E-12 93.1 10.9 207 107-330 10-238 (375)
115 PRK08599 coproporphyrinogen II 98.6 2.3E-07 4.9E-12 92.1 11.1 207 101-331 4-231 (377)
116 PRK13347 coproporphyrinogen II 98.6 5.3E-07 1.1E-11 91.8 13.6 212 98-331 50-282 (453)
117 TIGR00510 lipA lipoate synthas 98.6 2.6E-07 5.6E-12 89.1 10.5 199 104-333 68-278 (302)
118 TIGR03279 cyano_FeS_chp putati 98.6 3.9E-07 8.4E-12 91.1 10.5 86 196-288 120-205 (433)
119 TIGR03550 F420_cofG 7,8-dideme 98.5 2.6E-07 5.7E-12 89.9 7.6 195 102-325 7-231 (322)
120 PRK08445 hypothetical protein; 98.5 3.3E-07 7.2E-12 90.2 7.3 160 105-290 48-224 (348)
121 PLN02428 lipoic acid synthase 98.4 1.5E-06 3.2E-11 85.2 10.2 197 106-333 109-318 (349)
122 PRK08444 hypothetical protein; 98.4 1E-06 2.3E-11 86.8 8.6 196 104-325 54-270 (353)
123 TIGR01210 conserved hypothetic 98.4 4.1E-06 9E-11 81.3 12.2 205 103-332 19-249 (313)
124 PRK07360 FO synthase subunit 2 98.4 1.3E-06 2.8E-11 86.7 8.7 172 105-303 66-256 (371)
125 COG2108 Uncharacterized conser 98.3 6.7E-07 1.5E-11 85.4 4.8 162 103-304 32-205 (353)
126 COG0502 BioB Biotin synthase a 98.3 2.3E-06 4.9E-11 83.1 8.4 206 107-342 59-274 (335)
127 COG1533 SplB DNA repair photol 98.3 2.2E-06 4.8E-11 82.5 8.3 161 104-288 34-210 (297)
128 PRK00955 hypothetical protein; 98.3 1.8E-06 3.9E-11 90.1 7.7 182 99-307 292-521 (620)
129 PRK06294 coproporphyrinogen II 98.2 1.4E-05 3E-10 79.4 12.6 158 158-330 58-233 (370)
130 PRK07379 coproporphyrinogen II 98.2 9.7E-06 2.1E-10 81.3 11.4 210 100-330 12-245 (400)
131 COG1964 Predicted Fe-S oxidore 98.2 2.6E-06 5.6E-11 84.5 6.3 153 119-302 83-240 (475)
132 PRK08898 coproporphyrinogen II 98.1 2.3E-05 5E-10 78.4 12.3 211 100-330 21-247 (394)
133 PRK09057 coproporphyrinogen II 98.1 1.6E-05 3.4E-10 79.3 10.9 206 100-331 6-234 (380)
134 PRK01254 hypothetical protein; 98.1 6.3E-06 1.4E-10 86.1 8.0 172 99-290 372-586 (707)
135 PRK09058 coproporphyrinogen II 98.1 2.8E-05 6.1E-10 79.1 12.1 211 100-331 63-295 (449)
136 COG1032 Fe-S oxidoreductase [E 98.1 1.1E-05 2.3E-10 81.7 8.9 192 100-311 199-402 (490)
137 PRK09613 thiH thiamine biosynt 98.1 1.9E-05 4.2E-10 80.5 10.3 207 106-336 91-319 (469)
138 PRK06582 coproporphyrinogen II 98.1 5.2E-05 1.1E-09 75.8 13.2 207 99-330 12-240 (390)
139 PRK05927 hypothetical protein; 98.1 5.7E-06 1.2E-10 81.5 6.1 199 106-326 52-269 (350)
140 PRK05904 coproporphyrinogen II 98.0 4.7E-05 1E-09 75.1 11.7 206 100-331 8-229 (353)
141 PRK08629 coproporphyrinogen II 97.9 5.1E-05 1.1E-09 76.9 10.4 193 107-325 60-265 (433)
142 PRK05926 hypothetical protein; 97.9 1.5E-05 3.2E-10 79.1 6.3 168 106-301 75-260 (370)
143 PRK09234 fbiC FO synthase; Rev 97.8 7.2E-05 1.6E-09 81.3 9.3 202 98-326 521-752 (843)
144 PTZ00413 lipoate synthase; Pro 97.8 0.00014 3E-09 71.7 10.4 195 107-333 157-366 (398)
145 COG1856 Uncharacterized homolo 97.5 0.0005 1.1E-08 62.9 8.3 203 107-340 19-232 (275)
146 TIGR01211 ELP3 histone acetylt 97.5 0.0012 2.5E-08 68.5 12.1 121 196-326 194-330 (522)
147 COG0635 HemN Coproporphyrinoge 97.0 0.0052 1.1E-07 62.1 11.2 213 99-330 35-266 (416)
148 PRK09234 fbiC FO synthase; Rev 96.9 0.0013 2.8E-08 71.8 6.2 191 106-326 78-301 (843)
149 COG1060 ThiH Thiamine biosynth 96.1 0.0093 2E-07 59.3 5.5 195 106-326 66-283 (370)
150 COG1243 ELP3 Histone acetyltra 95.9 0.064 1.4E-06 54.2 10.3 134 197-342 187-338 (515)
151 COG2516 Biotin synthase-relate 95.4 0.027 5.9E-07 54.3 5.5 170 162-343 90-272 (339)
152 KOG1160|consensus 95.3 0.018 3.9E-07 57.6 4.0 154 158-327 353-513 (601)
153 COG1244 Predicted Fe-S oxidore 95.2 0.18 4E-06 48.8 10.4 150 109-278 61-221 (358)
154 COG1031 Uncharacterized Fe-S o 94.8 0.1 2.2E-06 52.6 7.7 189 103-309 187-410 (560)
155 COG0320 LipA Lipoate synthase 92.8 0.33 7.2E-06 46.1 6.9 187 107-331 78-282 (306)
156 COG4277 Predicted DNA-binding 90.5 0.59 1.3E-05 45.0 5.8 190 100-309 50-262 (404)
157 cd03174 DRE_TIM_metallolyase D 90.3 1.4 3E-05 41.1 8.2 165 124-327 13-186 (265)
158 KOG2672|consensus 89.8 0.56 1.2E-05 44.6 5.0 191 107-332 119-326 (360)
159 KOG2900|consensus 87.9 0.24 5.2E-06 46.5 1.2 169 100-305 85-267 (380)
160 COG1242 Predicted Fe-S oxidore 86.6 4.3 9.3E-05 38.9 8.7 110 215-334 142-262 (312)
161 KOG2492|consensus 73.2 1.2 2.6E-05 44.6 0.2 56 97-167 218-274 (552)
162 PF14824 Sirohm_synth_M: Siroh 73.2 2.9 6.3E-05 26.2 1.9 17 196-212 6-22 (30)
163 PF05853 DUF849: Prokaryotic p 65.6 66 0.0014 30.6 10.4 169 127-332 23-200 (272)
164 TIGR03315 Se_ygfK putative sel 57.9 4.3 9.2E-05 45.7 0.8 26 133-171 944-969 (1012)
165 PRK15063 isocitrate lyase; Pro 57.5 55 0.0012 33.3 8.5 83 242-336 263-346 (428)
166 TIGR02512 Fe_only_hydrog hydro 52.1 1.2 2.7E-05 44.3 -4.2 72 114-206 60-135 (374)
167 TIGR03278 methan_mark_10 putat 48.0 6.6 0.00014 39.7 0.3 15 107-121 7-21 (404)
168 TIGR00426 competence protein C 46.6 19 0.00041 26.5 2.5 54 2-57 8-65 (69)
169 COG0296 GlgB 1,4-alpha-glucan 43.5 43 0.00094 35.8 5.5 58 275-335 163-233 (628)
170 PF08902 DUF1848: Domain of un 42.7 1.8E+02 0.0039 27.7 9.0 110 216-333 74-199 (266)
171 PF11823 DUF3343: Protein of u 41.0 24 0.00053 26.3 2.4 29 318-347 14-42 (73)
172 cd00951 KDGDH 5-dehydro-4-deox 39.7 1.1E+02 0.0024 29.2 7.3 19 270-288 74-92 (289)
173 PRK03620 5-dehydro-4-deoxygluc 38.1 1.2E+02 0.0026 29.1 7.3 21 268-288 79-99 (303)
174 cd07945 DRE_TIM_CMS Leptospira 36.4 28 0.00061 33.2 2.6 100 126-251 107-214 (280)
175 TIGR03249 KdgD 5-dehydro-4-deo 35.6 1.3E+02 0.0029 28.6 7.2 23 267-289 76-98 (296)
176 PF10096 DUF2334: Uncharacteri 35.5 1.4E+02 0.003 27.8 7.1 65 268-334 5-73 (243)
177 PF06627 DUF1153: Protein of u 35.2 39 0.00085 26.7 2.7 29 4-32 58-89 (90)
178 PLN02417 dihydrodipicolinate s 34.6 1.2E+02 0.0027 28.7 6.7 21 268-288 73-94 (280)
179 PLN02746 hydroxymethylglutaryl 33.0 40 0.00086 33.4 3.1 103 125-252 153-265 (347)
180 PF02037 SAP: SAP domain; Int 31.9 34 0.00074 21.9 1.6 20 4-23 1-20 (35)
181 cd00954 NAL N-Acetylneuraminic 30.0 1.9E+02 0.004 27.5 7.1 13 276-288 82-94 (288)
182 COG2984 ABC-type uncharacteriz 28.8 1.3E+02 0.0029 29.4 5.8 69 269-346 136-206 (322)
183 cd00950 DHDPS Dihydrodipicolin 28.5 1.9E+02 0.0041 27.2 6.9 21 268-288 72-93 (284)
184 PF07587 PSD1: Protein of unkn 28.3 28 0.00061 33.0 1.1 51 9-59 3-62 (266)
185 PF00070 Pyr_redox: Pyridine n 27.7 1.6E+02 0.0035 21.7 5.1 49 279-334 11-59 (80)
186 COG3444 Phosphotransferase sys 27.7 2E+02 0.0043 25.3 6.2 102 221-337 33-145 (159)
187 PRK12344 putative alpha-isopro 26.8 37 0.0008 35.5 1.8 87 125-228 117-211 (524)
188 smart00642 Aamy Alpha-amylase 26.8 2E+02 0.0044 25.0 6.2 21 314-334 68-88 (166)
189 PRK05692 hydroxymethylglutaryl 26.0 43 0.00093 32.1 1.9 89 126-228 112-209 (287)
190 PRK11858 aksA trans-homoaconit 26.0 3.8E+02 0.0082 26.7 8.7 138 124-289 20-157 (378)
191 PRK09912 L-glyceraldehyde 3-ph 25.8 4.3E+02 0.0093 25.7 9.0 92 221-339 135-226 (346)
192 cd00952 CHBPH_aldolase Trans-o 25.7 1.9E+02 0.0042 27.8 6.4 23 267-289 79-102 (309)
193 PRK11172 dkgB 2,5-diketo-D-glu 25.1 5.6E+02 0.012 23.8 10.1 89 221-339 94-182 (267)
194 COG1168 MalY Bifunctional PLP- 24.9 2.4E+02 0.0053 28.3 6.9 133 168-333 57-195 (388)
195 cd00052 EH Eps15 homology doma 24.4 1.4E+02 0.003 20.7 4.1 41 7-47 16-58 (67)
196 cd04908 ACT_Bt0572_1 N-termina 24.3 1.2E+02 0.0025 21.7 3.6 56 273-333 9-65 (66)
197 PF00062 Lys: C-type lysozyme/ 24.2 52 0.0011 27.7 1.9 27 7-33 3-29 (125)
198 PRK03170 dihydrodipicolinate s 24.1 3E+02 0.0066 26.0 7.4 14 173-186 20-33 (292)
199 cd07939 DRE_TIM_NifV Streptomy 23.9 47 0.001 31.1 1.8 86 126-228 102-192 (259)
200 COG0757 AroQ 3-dehydroquinate 23.9 1.5E+02 0.0032 25.6 4.5 56 3-58 20-91 (146)
201 PRK09389 (R)-citramalate synth 23.8 44 0.00096 34.6 1.7 86 126-228 106-196 (488)
202 COG1647 Esterase/lipase [Gener 23.8 1E+02 0.0022 28.8 3.8 75 265-341 17-97 (243)
203 PF14117 DUF4287: Domain of un 23.5 1.2E+02 0.0025 22.3 3.3 30 5-35 13-42 (61)
204 TIGR02313 HpaI-NOT-DapA 2,4-di 23.3 2.8E+02 0.0061 26.4 7.0 14 173-186 19-32 (294)
205 smart00513 SAP Putative DNA-bi 23.2 1.1E+02 0.0024 19.3 2.9 24 5-28 2-25 (35)
206 PRK11858 aksA trans-homoaconit 22.9 51 0.0011 32.9 1.9 87 125-228 107-198 (378)
207 PF07498 Rho_N: Rho terminatio 22.8 85 0.0018 21.0 2.4 34 4-37 2-38 (43)
208 PF00248 Aldo_ket_red: Aldo/ke 22.2 4.8E+02 0.01 24.0 8.3 90 221-340 103-192 (283)
209 PF13627 LPAM_2: Prokaryotic l 21.9 32 0.0007 20.4 0.1 6 343-348 12-17 (24)
210 cd06660 Aldo_ket_red Aldo-keto 21.7 6.3E+02 0.014 23.2 9.0 90 221-340 114-203 (285)
211 KOG2420|consensus 21.7 1.5E+02 0.0032 29.4 4.6 65 26-92 110-180 (382)
212 TIGR02660 nifV_homocitr homoci 21.7 56 0.0012 32.4 1.9 86 126-228 105-195 (365)
213 TIGR00250 RNAse_H_YqgF RNAse H 21.6 2.4E+02 0.0052 23.6 5.4 27 321-348 98-124 (130)
214 COG0329 DapA Dihydrodipicolina 21.5 3.1E+02 0.0067 26.4 6.9 61 268-336 76-137 (299)
215 PRK00109 Holliday junction res 21.3 2.3E+02 0.005 24.0 5.3 26 322-349 105-131 (138)
216 COG0041 PurE Phosphoribosylcar 21.1 3.8E+02 0.0083 23.5 6.5 61 268-339 7-67 (162)
217 PLN02321 2-isopropylmalate syn 20.9 66 0.0014 34.5 2.3 88 125-228 201-297 (632)
218 smart00540 LEM in nuclear memb 20.7 73 0.0016 21.8 1.7 29 3-31 2-34 (44)
219 cd07940 DRE_TIM_IPMS 2-isoprop 20.6 60 0.0013 30.5 1.8 99 126-251 106-212 (268)
220 PF12836 HHH_3: Helix-hairpin- 20.6 1.7E+02 0.0037 21.1 3.9 53 2-57 6-62 (65)
221 TIGR00683 nanA N-acetylneurami 20.3 3.2E+02 0.0069 26.0 6.7 22 268-289 73-95 (290)
222 PRK02308 uvsE putative UV dama 20.2 1.3E+02 0.0029 29.0 4.1 35 298-332 70-107 (303)
223 PRK04147 N-acetylneuraminate l 20.2 3.3E+02 0.0071 25.9 6.8 21 268-288 76-97 (293)
No 1
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=9.6e-109 Score=798.18 Aligned_cols=351 Identities=36% Similarity=0.617 Sum_probs=324.9
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCC-ceeE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDG-TRKW 79 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~k~ 79 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.||++||||||++|++|+++|.+..+++++.+.|.|| |+||
T Consensus 7 ~~~l~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~T~K~ 86 (371)
T PRK14461 7 QRNLYDLNLAELTELLTAWGQPAFRARQLYRHLYVNLADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGLTRKA 86 (371)
T ss_pred CcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCCeEEE
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCc-cc-CCcCc
Q psy9577 80 IFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI-NSQGK 156 (354)
Q Consensus 80 l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~-~~-~~~gg 156 (354)
||++. |..||||+||+.+|+|+|||||+||+|+|.||+||++|+.||||++||++||+.+.+.++..+.. +. +.+..
T Consensus 87 L~~l~DG~~IEtVli~~~~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~ 166 (371)
T PRK14461 87 LFRLPDGAVVETVLMIYPDRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPV 166 (371)
T ss_pred EEEcCCCCEEEEEEEecCCCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 99999 99999999999999999999999999999999999999999999999999999887765431000 00 00001
Q ss_pred eeEEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccccce
Q psy9577 157 RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLV 235 (354)
Q Consensus 157 ~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~ 235 (354)
.+|+|||||||||||+|||+|++++++|+++.|++||.|||||||+|++|.|++|+++. +++|||||||+++++|++||
T Consensus 167 ~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lm 246 (371)
T PRK14461 167 GRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELM 246 (371)
T ss_pred CceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhc
Confidence 36999999999999999999999999999999999999999999999999999999874 78999999999999999999
Q ss_pred eCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcc--ccceeeeeeeCCCCCCCCcccc
Q psy9577 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI--LTSCKINLIPFNCFPNSNLICS 313 (354)
Q Consensus 236 p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~--~~~~~vnLIp~n~~~~~~~~~p 313 (354)
|+|++|++++|++++++|.+.+ +++|+|||+||+|+||+++||++|++++++.+. .++++||||||||+++..|++|
T Consensus 247 Pin~~ypl~eLl~a~~~y~~~t-~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~p 325 (371)
T PRK14461 247 PVNRRYPIADLMAATRDYIAKT-RRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRS 325 (371)
T ss_pred CcccCCCHHHHHHHHHHHHHhh-CCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCC
Confidence 9999999999999999999888 579999999999999999999999999998210 0179999999999999999999
Q ss_pred cchhHHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 314 KNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 314 ~~e~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+.+++++|+++|.++|++|++|+++|+||+||||||+.+
T Consensus 326 s~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~ 364 (371)
T PRK14461 326 ERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR 364 (371)
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence 999999999999999999999999999999999999875
No 2
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=5.7e-102 Score=741.60 Aligned_cols=340 Identities=51% Similarity=0.839 Sum_probs=327.1
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
|.++++|+.+++++++.++|+++|||+|||+|+|++++.||++||||||++|++|+++|.+..++++..+.|.|||+|||
T Consensus 1 ~~~l~~l~~~~~~~~~~~~g~~~fra~Qi~~W~y~~~~~~f~~Mtnl~k~~r~~L~~~~~~~~~~~~~~~~s~dGT~K~l 80 (349)
T COG0820 1 KRNLLDLTRAELAEWLAELGLKKFRAKQLFKWIYQKGVDDFDEMTDLSKGLRAKLKEAFFINLLKVVEVQESSDGTIKWL 80 (349)
T ss_pred CcchhhcCHHHHHHHHHhcCccchHHHHHHHHHHHHhccCHHHhccccHHHHHHHHHhhccccceEEEEEEcCCCCEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-cC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCcee
Q psy9577 81 FH-VK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ 158 (354)
Q Consensus 81 ~~-~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~ 158 (354)
|+ +. |..||||+||+.+|+|+|||||+||+++|.||+||+.|+.||||++||++|++.+.+.+++. .+++
T Consensus 81 ~~~l~dg~~iEtV~ip~~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~--------~~~~ 152 (349)
T COG0820 81 FEVLPDGTMIETVLIPEKDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGED--------FGRR 152 (349)
T ss_pred EEEcCCCCEEEEEEEEecCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCcc--------ccce
Confidence 99 77 89999999999999999999999999999999999999999999999999999988777642 1468
Q ss_pred EEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCcccccccceeC
Q psy9577 159 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPI 237 (354)
Q Consensus 159 i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~ 237 (354)
++|||||||||||+|+++|..+++++.+..|+++|+|+|||||+|++|.|.+++++ +++.||+||||+++++|+.|||+
T Consensus 153 i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pi 232 (349)
T COG0820 153 ISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPI 232 (349)
T ss_pred eeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhcc
Confidence 99999999999999999999999999998999999999999999999999999964 68999999999999999999999
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchh
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR 317 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~ 317 (354)
|++|+++++++++++|...++ ++|++||+|++||||+.++|++|++++++ .+++||||||||+++..|++|+.++
T Consensus 233 nk~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~----~~~~VNLIP~Np~~~~~y~r~~~~~ 307 (349)
T COG0820 233 NKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKG----IPCKVNLIPYNPVPGSDYERSSKER 307 (349)
T ss_pred ccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcC----CCceEEEeecCCCCCCCccCCcHHH
Confidence 999999999999999998884 79999999999999999999999999999 8899999999999999999999999
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
+.+|.++|.++|+.++||.++|+||+||||||+.+.
T Consensus 308 i~~F~~~L~~~gv~~tvR~~~g~DIdaACGQL~~~~ 343 (349)
T COG0820 308 IRKFLKILKKAGVLVTVRKTRGDDIDAACGQLRGKR 343 (349)
T ss_pred HHHHHHHHHhCCeeEEeccccccccccccchhhhhh
Confidence 999999999999999999999999999999999763
No 3
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.6e-101 Score=749.52 Aligned_cols=344 Identities=36% Similarity=0.585 Sum_probs=322.6
Q ss_pred ccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCC-ceeEEE
Q psy9577 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDG-TRKWIF 81 (354)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~k~l~ 81 (354)
+|++|+++||++++.++|+|+|||+|||+|+|++++.||++|||||+++|++|+++|.+..++++..+.|.|| |+||||
T Consensus 23 ~l~~l~~~el~~~~~~~g~~~~ra~Qi~~wiy~~~~~~~~~mt~l~k~~r~~L~~~~~~~~~~~~~~~~s~dg~t~K~l~ 102 (373)
T PRK14459 23 HLADLTPAERREAVAELGLPAFRAKQLARHYFGRLTADPAQMTDLPAAAREELAEALFPTLLTPVRTLEADDGTTRKTLW 102 (373)
T ss_pred CcccCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCHHHhcccCHHHHHHHHhhcccCCceEEEEEEcCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577 82 HVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT 160 (354)
Q Consensus 82 ~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~ 160 (354)
++. |+.||||+||+.+|.|+|||||+||+|+|.||+||++|+.||||++||++||..+..++...+. .+|+.+|+
T Consensus 103 ~l~Dg~~iEtV~i~~~~~~tlCvSsQvGC~m~C~FCatg~~g~~RnLt~~EIv~Qv~~~~~~~~~~~~----~~~~~~i~ 178 (373)
T PRK14459 103 RLHDGTLVESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLTRNLSTAEIVEQVRAAARALRDGEV----PGGPGRLS 178 (373)
T ss_pred EcCCCCEEEEEEEEEcCCceEEEEecCCCCCcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHhhhccc----ccCCCcee
Confidence 999 9999999999999999999999999999999999999999999999999999998877753100 01235699
Q ss_pred eeeeeccCccccccccccceeeeeec--cccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccccceeC
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILS--DHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPI 237 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~--~~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~ 237 (354)
|||||||||||+||++|.++++.+++ +.|++||.|||||||+|++|.|++++++. +++|+|||||+|+++|++|||+
T Consensus 179 nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~ 258 (373)
T PRK14459 179 NVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPV 258 (373)
T ss_pred EEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCc
Confidence 99999999999999999999999998 57899999999999999999999999874 6789999999999999999999
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchh
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR 317 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~ 317 (354)
|++|+++++++++++|...+ +++|+|||+||+|+||+++||++|++|+++++. ..++||||||||+++.+|++|+.+.
T Consensus 259 n~~~~l~~ll~a~~~~~~~~-grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~-~~~~VNLIpyNp~~~~~y~~~~~~~ 336 (373)
T PRK14459 259 NTRWKVDEVLDAARYYADAT-GRRVSIEYALIRDINDQPWRADLLGKKLHGRGG-GWVHVNLIPLNPTPGSKWTASPPEV 336 (373)
T ss_pred ccCCCHHHHHHHHHHHHHHh-CCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccC-CCeEEEEEccCCCCCCCCcCCCHHH
Confidence 99999999999999998777 479999999999999999999999999998310 1699999999999999999999999
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+++|+++|+++|+.|++|+++|+||+||||||+.+
T Consensus 337 ~~~F~~~L~~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 337 EREFVRRLRAAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred HHHHHHHHHHCCCeEEeeCCCCcCHhhcCCccccc
Confidence 99999999999999999999999999999999875
No 4
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.7e-99 Score=741.82 Aligned_cols=343 Identities=50% Similarity=0.861 Sum_probs=325.0
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.||++|||||+++|++|+++|.+..++++..+.|.|||+|||
T Consensus 5 ~~~l~~~~~~el~~~~~~~g~~~~ra~qi~~w~y~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l 84 (372)
T PRK11194 5 KINLLDLNRQQMREFFAELGEKPFRADQVMKWIYHYGCDDFDEMTNINKVLREKLKEVAEIRAPEVAEEQRSSDGTIKWA 84 (372)
T ss_pred ccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhcccccCCcccceEEEcCCCeEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577 81 FHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT 160 (354)
Q Consensus 81 ~~~~g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~ 160 (354)
|++..+.||||+||+++|+|+|||||+||+|+|.||+||.+|+.||||++||++||+.+..+++.++ ..|+.+++
T Consensus 85 ~~l~D~~iEsV~~~~~~~~t~CvSsQvGC~~~C~FC~t~~~g~~rnLt~~EIv~Qv~~~~~~~~~~~-----~~gg~~~~ 159 (372)
T PRK11194 85 IAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAK-----VTGQRPIT 159 (372)
T ss_pred EEcCCCeEEEEEEEcCCCeeEEEecCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcc-----ccCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988886430 01335699
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCc
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~ 240 (354)
|||||||||||+|+++|.++++.++++.|+++|+|||||||+|++|.+++++++.++.|++||||+|++.|++|||++++
T Consensus 160 nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~ 239 (372)
T PRK11194 160 NVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDEIVPINKK 239 (372)
T ss_pred eEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhccCeEEEeeccCCCHHHHHHhcCCccc
Confidence 99999999999999999999999998899999999999999999999999998878889999999999999999999999
Q ss_pred CchHHHHHHHhhhhccCC--CceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhH
Q psy9577 241 YPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRI 318 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~--~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l 318 (354)
|+++++++++++|...++ +++|+|||+||||+||+++|+++|++|+++ ++++||||||||+++.+|++|+.+++
T Consensus 240 ~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~----l~~~VnLIPYN~~~~~~~~~ps~e~v 315 (372)
T PRK11194 240 YNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSRI 315 (372)
T ss_pred ccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhc----CCceEEEecCCCCCCCCCCCCCHHHH
Confidence 999999999999987763 268999999999999999999999999999 66899999999999999999999999
Q ss_pred HHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 319 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 319 ~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
++|.++|+++|++|++|+++|+||+||||||+.+
T Consensus 316 ~~f~~~L~~~Gi~vtiR~~~G~di~aaCGQL~~~ 349 (372)
T PRK11194 316 DRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGD 349 (372)
T ss_pred HHHHHHHHHCCCeEEEecCCCCcchhcCcCcHhh
Confidence 9999999999999999999999999999999875
No 5
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.6e-99 Score=732.52 Aligned_cols=335 Identities=32% Similarity=0.531 Sum_probs=317.6
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++||||||++|++|+++|.+..++++..+.|.|||+|||
T Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~fra~Qi~~wiy~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l 83 (342)
T PRK14465 4 KIPLKGRTLKELSEIMVSLGEKKFRAKQIYHGLYVNRYETWDQFTTFSKEVKEKLEELCSLTELEVVKDLKSVDGTQKFT 83 (342)
T ss_pred ccCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcccccCCccEEEEEEcCCCcEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CceeEEEeeecC--CCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCce
Q psy9577 81 FHVK-KNIIETVFIPEK--NRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKR 157 (354)
Q Consensus 81 ~~~~-g~~iE~v~i~~~--~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~ 157 (354)
|+++ |..||||+||+. +|.|+|||||+||+|+|.||++|++|+.|||+++||++|+..+...++ .
T Consensus 84 ~~l~Dg~~iEtV~i~~~~~~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~------------~ 151 (342)
T PRK14465 84 FYSGEGKEFEAVWIPSGDGGRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVG------------D 151 (342)
T ss_pred EEcCCCCEEEEEEeEecCCCceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcC------------C
Confidence 9999 999999999985 579999999999999999999999999999999999999987665432 3
Q ss_pred eEEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCccccccccee
Q psy9577 158 QITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVP 236 (354)
Q Consensus 158 ~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p 236 (354)
+++|||||||||||+||++|++++++++++.|+++|.|+|||||||++|.+.+++++ .+++|+|||||++++.|.+|||
T Consensus 152 ~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~P 231 (342)
T PRK14465 152 RATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMD 231 (342)
T ss_pred CceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEee
Confidence 589999999999999999999999999998899999999999999999999999865 4689999999999999999999
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccch
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNS 316 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e 316 (354)
++++|+++++++++++|.+.+ +++|+|||+||||+||++||+++|++|+++ ++++||||||||. +..|++|+.+
T Consensus 232 i~~~~~le~ll~al~~~~~~~-~r~v~ieyvLI~GvNDs~eda~~L~~ll~~----l~~kVnLIPyN~~-~~~~~~ps~e 305 (342)
T PRK14465 232 IEEKFPLEELLQAAKDFTREL-KRRITFEYVMIPGVNMGRENANKLVKIARS----LDCKINVIPLNTE-FFGWRRPTDD 305 (342)
T ss_pred ccccCCHHHHHHHHHHHHHHc-CCEEEEEEEEECCccCCHHHHHHHHHHHhh----CCCcEEEEccCCC-CCCCCCCCHH
Confidence 999999999999999998777 469999999999999999999999999999 6799999999996 5789999999
Q ss_pred hHHHHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 317 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 317 ~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
++++|+++|+++|+.|++|+++|+||+||||||+.++
T Consensus 306 ~i~~F~~~L~~~Gi~v~~R~~~G~di~aACGqL~~~~ 342 (342)
T PRK14465 306 EVAEFIMLLEPAGVPILNRRSPGKDIFGACGMLASKS 342 (342)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcChhhcCCccccCC
Confidence 9999999999999999999999999999999999763
No 6
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=9.6e-99 Score=727.29 Aligned_cols=334 Identities=38% Similarity=0.661 Sum_probs=319.2
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|++|+++|.+..++++..+.|.|||+|||
T Consensus 4 ~~~l~~l~~~el~~~~~~~g~~~fra~Qi~~wi~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l 83 (345)
T PRK14466 4 KYPLLGMTLEELQSVAKRLGMPAFAAKQIASWLYDKKVTSIDEMTNISLAHREKLAEEYEIGAYAPVDEQRSVDGTIKYL 83 (345)
T ss_pred CcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHHhhhhHHHHHhhcCCeEecCceEEEEEEcCCCeEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeE
Q psy9577 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI 159 (354)
Q Consensus 81 ~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i 159 (354)
|++. |..||||+||++.|.|+|||||+||+|+|.||+||.+|+.||||++||++|+..+... .++
T Consensus 84 ~~l~dg~~iEsVlip~~~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~--------------~~i 149 (345)
T PRK14466 84 FPVGEGHFVESVYIPEEDRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER--------------DKL 149 (345)
T ss_pred EEcCCCCEEEEEEEecCCceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc--------------CCC
Confidence 9999 9999999999999999999999999999999999999999999999999999865321 248
Q ss_pred EeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCC
Q psy9577 160 TNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 160 ~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
+|||||||||||+|+++|+++++.++++.|+++|.|+|||||||+.|.++++++..++.|++||||++++.|++|||+++
T Consensus 150 ~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~ 229 (345)
T PRK14466 150 TNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPAEK 229 (345)
T ss_pred CeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCcc
Confidence 89999999999999999999999999989999999999999999999999988877788999999999999999999999
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHH
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~ 319 (354)
+|+++++++++++|.+.+ +++|+|||+||+|+||+++||.+|++++++ ++++||||||||.++..|++|+.++++
T Consensus 230 ~~~l~~l~~al~~y~~~~-~rri~~Ey~Li~gvND~~e~a~~L~~ll~~----~~~~VNLIp~Np~~~~~~~~~s~~~~~ 304 (345)
T PRK14466 230 AFSIKEIIDLLKNYDFSK-QRRVSFEYIVFKGLNDSLKHAKELVKLLRG----IDCRVNLIRFHAIPGVDLEGSDMARME 304 (345)
T ss_pred CCCHHHHHHHHHHHHHhh-CCEEEEEEEEeCCCCCCHHHHHHHHHHHcC----CCceEEEEecCCCCCCCCcCCCHHHHH
Confidence 999999999999999887 469999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
+|+++|+++|+.|++|+++|+||+||||||+.+.
T Consensus 305 ~F~~~L~~~gi~~tvR~s~G~dI~aACGQL~~~~ 338 (345)
T PRK14466 305 AFRDYLTSHGVFTTIRASRGEDIFAACGMLSTAK 338 (345)
T ss_pred HHHHHHHHCCCcEEEeCCCCCchhhcCccchhhh
Confidence 9999999999999999999999999999998764
No 7
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=6.8e-99 Score=733.15 Aligned_cols=335 Identities=34% Similarity=0.577 Sum_probs=316.4
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
|.+|++|+++||++++ .|+|||+|||+|||++++.+|++|||||+++|+.|+++|.+..++++..+.|.|||+|||
T Consensus 2 ~~~l~~~~~~el~~~~----~~~~ra~qi~~~~~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~s~dgt~K~l 77 (356)
T PRK14462 2 KKNIYDFTLEELSELL----KPSFRAKQIYQWLYAKYATSFDDMKNLPKDLREYLAQEFTLDPLKIVKVEQSKDGSKKYL 77 (356)
T ss_pred CCccccCCHHHHHHHh----ccchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCcceEEEEEcCCCeEEEE
Confidence 5789999999999999 399999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CceeEEEeeecC-------------CCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhh
Q psy9577 81 FHVK-KNIIETVFIPEK-------------NRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRRE 146 (354)
Q Consensus 81 ~~~~-g~~iE~v~i~~~-------------~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~ 146 (354)
|+++ |..||||+||+. +|.|+|||||+||+|+|.||+||++|+.||||++||++||+.++.++..+
T Consensus 78 ~~l~Dg~~iEtV~i~~~~~~~~~~~~~~~~~r~t~CvSsQvGC~~~C~FCatg~~g~~RnLt~~EIv~QV~~~~~~~~~~ 157 (356)
T PRK14462 78 FKLRDGHTVEAVLLKMKDEKIDEEGKILEHAKYTVCVSSQVGCKVGCAFCLTAKGGFVRNLSAGEIVGQILWIKKDNNIP 157 (356)
T ss_pred EEcCCCCEEEEEEeeccccccccccccccCCCceEeeeccccCCCCCccCCCCCCCCcccCCHHHHHHHHHHHHHhhhcc
Confidence 9999 999999999975 68999999999999999999999999999999999999999888776432
Q ss_pred cCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeecc
Q psy9577 147 KNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHA 225 (354)
Q Consensus 147 ~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a 225 (354)
+.+++|||||||||||+|+++|.++++.++++.|+++|+|||||||+|++|.|++|++. +.+.|++||||
T Consensus 158 ---------~~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha 228 (356)
T PRK14462 158 ---------YEKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHA 228 (356)
T ss_pred ---------ccccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCC
Confidence 12467999999999999999999999999997899999999999999999999998876 45789999999
Q ss_pred CcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCC
Q psy9577 226 SNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF 305 (354)
Q Consensus 226 ~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~ 305 (354)
+|++.|+++||++++|+++++++++++|...+ +++|+|||+||||+||++|||++|++|+++ ++++||||||||+
T Consensus 229 ~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~-~~~i~ieyvLI~GvNDs~e~a~~La~llk~----l~~~VnLIPyn~~ 303 (356)
T PRK14462 229 VDDELRSELMPINKAYNIESIIDAVRKFPIDQ-RKRVMFEYLVIKDVNDDLKSAKKLVKLLNG----IKAKVNLILFNPH 303 (356)
T ss_pred CCHHHHHHhCCCCccCCHHHHHHHHHHHHHHh-CCeEEEEEEEECCCCCCHHHHHHHHHHHhh----cCcEEEEEeCCCC
Confidence 99999999999999999999999999998776 479999999999999999999999999999 7799999999999
Q ss_pred CCCCcccccchhHHHHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 306 PNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 306 ~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
++.+|++|+.+++++|+++|+++|+.|+||+++|+||+||||||+.+.
T Consensus 304 ~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~~~ 351 (356)
T PRK14462 304 EGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLREKK 351 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhh
Confidence 999999999999999999999999999999999999999999998763
No 8
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.6e-98 Score=730.29 Aligned_cols=338 Identities=40% Similarity=0.643 Sum_probs=318.3
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|+.|++.|.+..++++ .+.+.|||+|||
T Consensus 1 ~~~l~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~-~~~~~dgt~K~l 79 (348)
T PRK14467 1 MENIKNYNLEELEEFVVELGWEKYRAKQIAKWVYKKKVTDFDEMTDLSKEDRQLLKENFEFHTLELL-DRVEADDSVKYL 79 (348)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhcCcccCCceee-EEEcCCCeEEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999999988 677789999999
Q ss_pred EecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeE
Q psy9577 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI 159 (354)
Q Consensus 81 ~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i 159 (354)
|+++ |..||||+||+.+|.|+|||||+||+|+|.||+||++|+.||+|++||++||+.+..+++. .++
T Consensus 80 ~~~~dg~~vE~V~i~~~~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~-----------~~v 148 (348)
T PRK14467 80 FKTKDGHTIETVLIKERDHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGE-----------NRI 148 (348)
T ss_pred EEcCCCCEEEEEEEEeCCCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcc-----------CCC
Confidence 9999 9999999999999999999999999999999999999999999999999999998877642 247
Q ss_pred EeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC---cceeEEeeccCccccccccee
Q psy9577 160 TNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC---PVELAVSLHASNNNLRNKLVP 236 (354)
Q Consensus 160 ~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~---~~~LaiSL~a~~~e~r~~l~p 236 (354)
+|||||||||||+|+|+|.++++.++++.|+++|.|||||||||++|.|++++.+. .++|++||||+|++.|++|||
T Consensus 149 ~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p 228 (348)
T PRK14467 149 RNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMP 228 (348)
T ss_pred CeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcC
Confidence 89999999999999999999999999889999999999999999999998887652 568999999999999999999
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccch
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNS 316 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e 316 (354)
++++++++++++++++|...+ +++|+|||+||||+||+++|+++|++|+++++ ..++||||||||+++.+|++|+.+
T Consensus 229 ~~~~~~l~~l~~~~~~~~~~~-g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~--~~~~VnLIPynp~~~~~~~~ps~e 305 (348)
T PRK14467 229 ISKTNTLEELMEVLKQYPLPP-GRRIMLEYVLIKGVNDSPEDALRLAQLIGKNK--KKFKVNLIPFNPDPELPYERPELE 305 (348)
T ss_pred CccccCHHHHHHHHHHHHHhc-CCeEEEEEEEECCccCCHHHHHHHHHHHhcCC--CceEEEEecCCCCCCCCCCCCCHH
Confidence 999999999999999998777 47999999999999999999999999999842 248999999999999999999999
Q ss_pred hHHHHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 317 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 317 ~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
++++|.++|+++|+.|++|+++|+||+||||||+.+.
T Consensus 306 ~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 342 (348)
T PRK14467 306 RVYKFQKILWDNGISTFVRWSKGVDIFGACGQLRKKR 342 (348)
T ss_pred HHHHHHHHHHHCCCcEEEeCCCCcchhhcccchhHhh
Confidence 9999999999999999999999999999999998763
No 9
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.2e-97 Score=724.14 Aligned_cols=336 Identities=45% Similarity=0.759 Sum_probs=320.3
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCccccccccc-CCceeE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF-DGTRKW 79 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~-dgt~k~ 79 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|++|++.|.+..+++++.+.|. |||+||
T Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~~dgt~k~ 80 (342)
T PRK14454 1 MKNILDFTLEELKEWMKENGEKKFRAKQIFDWIYKKGVTDFDEMTNIPKNLREKLKENFYIGIPKIVKKLVSKIDGTVKF 80 (342)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHHhceecCCccEEEEEEecCCCeEEE
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999985 999999
Q ss_pred EEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCcee
Q psy9577 80 IFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ 158 (354)
Q Consensus 80 l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~ 158 (354)
||++. |..||||+||+..|.|+|||||+||+|+|.||+||.+|+.||||++||++||..++.+++. .
T Consensus 81 l~~~~dg~~iE~V~i~~~~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~------------~ 148 (342)
T PRK14454 81 LFELEDGNIIESVVMKYKHGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGE------------R 148 (342)
T ss_pred EEEcCCCCEEEEEEEEEcCCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcC------------C
Confidence 99999 9999999999999999999999999999999999999999999999999999999888742 3
Q ss_pred EEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCcccccccceeC
Q psy9577 159 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPI 237 (354)
Q Consensus 159 i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~ 237 (354)
++|||||||||||+|+|+|.++++.++++.|+++|.|||||||+|++|.+.+++++ ..+.|++||||+|++.|+++||+
T Consensus 149 ~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv 228 (342)
T PRK14454 149 ISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPI 228 (342)
T ss_pred CCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCC
Confidence 56899999999999999999999999987899999999999999999999999986 46779999999999999999999
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchh
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR 317 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~ 317 (354)
+++++++++++++++|...+ +++|+|||+||||+||+++|+++|++|+++ +.++||||||||+++.+|++|++++
T Consensus 229 ~~~~~L~~l~~~~~~~~~~~-~~rv~iey~LI~gvNDs~eda~~La~llk~----l~~~VnLiPyn~~~~~~~~~ps~e~ 303 (342)
T PRK14454 229 ANKYSIEELIEACKYYINKT-NRRITFEYALVKGVNDSKEDAKELGKLLKG----MLCHVNLIPVNEVKENGFKKSSKEK 303 (342)
T ss_pred cccCCHHHHHHHHHHHHHHh-CCEEEEEEEeECCCCCCHHHHHHHHHHHhc----CCceEEEEecCCCCCCCCCCCCHHH
Confidence 99999999999999988777 479999999999999999999999999998 6799999999999999999999999
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
+++|+++|+++|++|++|+++|+||+||||||+++.
T Consensus 304 l~~f~~~l~~~gi~v~iR~~~G~di~aaCGQL~~~~ 339 (342)
T PRK14454 304 IKKFKNILKKNGIETTIRREMGSDINAACGQLRRSY 339 (342)
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCchhhcCcccchhh
Confidence 999999999999999999999999999999998753
No 10
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=3e-97 Score=721.21 Aligned_cols=333 Identities=37% Similarity=0.668 Sum_probs=316.4
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhc-eeeeecCcccccccccCCceeE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKN-SVYIKAPHIMSDQISFDGTRKW 79 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~-~~~~~~~~~~~~~~s~dgt~k~ 79 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++++|++|||||+++|+.|++ .|.+..+++++.+.|.|||+||
T Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~w~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~s~dgt~K~ 80 (345)
T PRK14457 1 MKPLLGRSLAELEDWAVAQGQPAFRGRQLHDWLYNKGVRSLDEISVLPKAWRESLKDDGVPIGRLTIVERSVAPDGTLKL 80 (345)
T ss_pred CCccccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHcCccCHHHHHHHhhcCccccCceEEEEEEcCCCcEEE
Confidence 368999999999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred EEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCcee
Q psy9577 80 IFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ 158 (354)
Q Consensus 80 l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~ 158 (354)
||++. |+.||||+||+++|.|+|||||+||+|+|.||+||++|+.||+|++||++|+..+..+++ ..
T Consensus 81 l~~l~dg~~iE~v~~~~~~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~------------~~ 148 (345)
T PRK14457 81 LLSTEDGEIIETVGIPTEKRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQ------------RR 148 (345)
T ss_pred EEEcCCCCEEEEEEEEcCCCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhc------------CC
Confidence 99999 999999999999999999999999999999999999999999999999999998877653 24
Q ss_pred EEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC-------cceeEEeeccCccccc
Q psy9577 159 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-------PVELAVSLHASNNNLR 231 (354)
Q Consensus 159 i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~-------~~~LaiSL~a~~~e~r 231 (354)
+++||||||||||+|+++|+++++.++++ +++|.|+|||||+|++|.+++++++. +++|++||||+|+++|
T Consensus 149 ~~~IvfmGmGEPlln~~~v~~~i~~l~~~--~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r 226 (345)
T PRK14457 149 VSHVVFMGMGEPLLNIDEVLAAIRCLNQD--LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLR 226 (345)
T ss_pred CCEEEEEecCccccCHHHHHHHHHHHhcc--cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHH
Confidence 78999999999999999999999999874 67899999999999999999998754 5689999999999999
Q ss_pred ccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc
Q psy9577 232 NKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311 (354)
Q Consensus 232 ~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~ 311 (354)
++|||++++|+++++++++++|...+ +++|+|||+||||+||++||+++|++|+++ ++++||||||||+++.+|+
T Consensus 227 ~~i~p~~~~~~l~~l~~~~~~y~~~~-gr~I~iey~LIpGvNDs~e~a~~La~~l~~----l~~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 227 ETLIPSAKNYPIENLLEDCRHYVAIT-GRRVSFEYILLGGVNDLPEHAEELANLLRG----FQSHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred HHhcCCccCCCHHHHHHHHHHHHHHh-CCEEEEEEEEECCcCCCHHHHHHHHHHHhc----CCCeEEEecCCCCCCCCCC
Confidence 99999999999999999999998777 579999999999999999999999999999 6789999999999999999
Q ss_pred cccchhHHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 312 ~p~~e~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+|+.+++++|+++|+++|++|++|+++|+||+||||||+.+
T Consensus 302 ~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~ 342 (345)
T PRK14457 302 RPSPKRIQAFQRVLEQRGVAVSVRASRGLDANAACGQLRRN 342 (345)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEeCCCCCchhhccccchhc
Confidence 99999999999999999999999999999999999999865
No 11
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=2.6e-96 Score=718.56 Aligned_cols=339 Identities=47% Similarity=0.797 Sum_probs=322.2
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|||++++.+|++|||||+++|++|++.|.+..++++..+.|.|||+|||
T Consensus 6 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l 85 (355)
T TIGR00048 6 KPSLYDLTLQELRQWLKDLGEKPFRAKQIYKWLYHKGKDSFDDMTNLSKDLREKLNRVFEIRTPEIAHEQRSVDGTIKYL 85 (355)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchhHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhcEEeCCcceeEEEEcCCCeEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeE
Q psy9577 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI 159 (354)
Q Consensus 81 ~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i 159 (354)
|+++ |+.||||+||+.+|.|+|||+|+|||++|.||+++.+|+.|++|++||++|++.+..+++.. +.++
T Consensus 86 ~~~~dg~~iE~V~i~~~~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~---------~~~v 156 (355)
T TIGR00048 86 FKLGDGQTIETVLIPEKDRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNET---------GERV 156 (355)
T ss_pred EEcCCCCEEEEEEEEeCCCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc---------CCCe
Confidence 9999 99999999999999999999999999999999999999999999999999999888877543 2358
Q ss_pred EeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCcccccccceeCC
Q psy9577 160 TNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPIS 238 (354)
Q Consensus 160 ~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~~ 238 (354)
++||||||||||+|++++.++++.+++..|++||.++|||||||++|.+++++++ +++.|++||||++++.|++|||++
T Consensus 157 ~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~ 236 (355)
T TIGR00048 157 SNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPIN 236 (355)
T ss_pred eEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcc
Confidence 9999999999999999999999999977899999999999999999999999885 577899999999999999999999
Q ss_pred CcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhH
Q psy9577 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRI 318 (354)
Q Consensus 239 ~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l 318 (354)
++|+++++++++++|.+.+ +++|+|||+||||+||+++|+++|++|+++ ++++||||||||+++.+|++|+.+++
T Consensus 237 ~~~~l~~ll~~l~~~~~~~-g~~VtieyvLI~GvNDs~e~a~~La~llk~----l~~~VnLIPynp~~~~~~~~ps~e~i 311 (355)
T TIGR00048 237 KKYNIETLLAAVRRYLNKT-GRRVTFEYVLLDGVNDQVEHAEELAELLKG----TKCKVNLIPWNPFPEADYERPSNEQI 311 (355)
T ss_pred cCCCHHHHHHHHHHHHHHh-CCEEEEEEEEECCCCCCHHHHHHHHHHHhc----CCCceEEEecccCCCCCCCCCCHHHH
Confidence 9999999999999988776 479999999999999999999999999999 67899999999999999999999999
Q ss_pred HHHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 319 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 319 ~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
++|+++|.++|+.|++|+++|+||+||||||+.+.
T Consensus 312 ~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~~~~ 346 (355)
T TIGR00048 312 DRFAKTLMSYGFTVTIRKSRGDDIDAACGQLRAKD 346 (355)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcchhhcCCcchhhh
Confidence 99999999999999999999999999999998763
No 12
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.3e-95 Score=708.60 Aligned_cols=340 Identities=41% Similarity=0.695 Sum_probs=321.2
Q ss_pred CcccCCCChhHHHHHHH-HhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeE
Q psy9577 1 MTNLLDLSPLKFVNYCK-ELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKW 79 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~-~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~ 79 (354)
+.+|++|+++||++++. ++|+|+|||+|||+|+|++++.+|++|||||+++|++|+++|.+..++++..+.|.|||+||
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~ 80 (354)
T PRK14460 1 MTNILNLTYPELEAFITAELGEPRFRARQIWQWLWQKGARDFDSMTNVSKALRARLAEKAVINWPEVETVQTSSDGTVKF 80 (354)
T ss_pred CCCcccCCHHHHHHHHHHhcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcceecCCcceeEEEEcCCCcEEE
Confidence 46899999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC-CceeEEEeeecCC-CceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCce
Q psy9577 80 IFHVK-KNIIETVFIPEKN-RNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKR 157 (354)
Q Consensus 80 l~~~~-g~~iE~v~i~~~~-r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~ 157 (354)
||++. |..||||+||+.+ |+|+|+|||+||+|+|.||++|.+|+.|+||++||++|++.+..++..+ +|+.
T Consensus 81 l~~~~dg~~iE~V~~p~~~~r~t~CvSsq~GC~~~C~FC~tg~~g~~rnlt~~EI~~qv~~~~~~~~~~-------g~g~ 153 (354)
T PRK14460 81 LLRLADGALVETVLIPSKSRRYTQCLSCQVGCAMGCTFCSTGTMGFERNMTMGEILGQVLVAREHLGDN-------GPDH 153 (354)
T ss_pred EEEcCCCCEEEEEEeEcCCCceeEEeeCCCCcCCCCccCCCCCCCCCcCCCHHHHHHHHHHHHHHHhhc-------cCCC
Confidence 99999 9999999999998 9999999999999999999999999999999999999999888887643 2333
Q ss_pred e-EEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCccccccccee
Q psy9577 158 Q-ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVP 236 (354)
Q Consensus 158 ~-i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p 236 (354)
+ +++||||||||||+|+++|.++++.++++.|++||.|++||||||+.|.+++|.+...+.|+|||||+|++.|++|||
T Consensus 154 ~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p 233 (354)
T PRK14460 154 PILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGLAFLAVSLHAPNQELRERIMP 233 (354)
T ss_pred cceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcC
Confidence 4 999999999999999999999999999878999999999999999988888888764468999999999999999999
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccch
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNS 316 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e 316 (354)
.+++|+++++++++++|...+ +++|+|||+||||+||+++|+++|++|+++ .+++||||||||+.+.+|++|+.+
T Consensus 234 ~~~~~~l~~ll~al~~~~~~~-~~~v~iey~LI~GvNDs~ed~~~l~~~l~~----~~~~VnLIpyn~~~g~~y~~p~~e 308 (354)
T PRK14460 234 KAARWPLDDLIAALKSYPLKT-RERVTFEYLLLGGVNDSLEHARELVRLLSR----TKCKLNLIVYNPAEGLPYSAPTEE 308 (354)
T ss_pred ccccCCHHHHHHHHHHHHHhc-CCeEEEEEEEECCCCCCHHHHHHHHHHHhc----CCCcEEEEcCCCCCCCCCCCCCHH
Confidence 999999999999999888766 469999999999999999999999999999 668999999999999999999999
Q ss_pred hHHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 317 RIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 317 ~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
++++|+++|+++|++|++|+++|+||+||||||+.+
T Consensus 309 ~v~~f~~~l~~~Gi~vtir~~~G~di~aaCGqL~~~ 344 (354)
T PRK14460 309 RILAFEKYLWSKGITAIIRKSKGQDIKAACGQLKAE 344 (354)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCCchHhccccchhh
Confidence 999999999999999999999999999999999875
No 13
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5e-95 Score=709.70 Aligned_cols=337 Identities=38% Similarity=0.676 Sum_probs=321.2
Q ss_pred cccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEEE
Q psy9577 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIF 81 (354)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~ 81 (354)
.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|+.|+++|.+..++++..+.|.|||+||||
T Consensus 11 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l~ 90 (356)
T PRK14455 11 PSIYSLTLDELQEWLVEQGEKKFRATQIWDWLYRKRVQSFEEMTNLSKDLREKLNDNFVVTTLKTRVKQESKDGTIKFLF 90 (356)
T ss_pred cccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhcccCHHHHHHHhcccccCCccEEEEEEcCCCcEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577 82 HVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT 160 (354)
Q Consensus 82 ~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~ 160 (354)
++. |+.||||+||+++|.|+|||||+||+++|.||++|.+++.|++|++||++||..+..++..+ +.+++
T Consensus 91 ~~~dg~~ie~V~~~~~~~~t~ciSsqvGC~~~C~FC~t~~~~~~r~lt~~EIv~qv~~~~~~~~~~---------g~~v~ 161 (356)
T PRK14455 91 ELPDGYLIETVLMRHEYGNSVCVTTQVGCRIGCTFCASTLGGLKRDLEAGEIVAQVMLVQKYLDET---------EERVS 161 (356)
T ss_pred EcCCCCEEEEEEEEecCCceEEEECCCCCCCCCCcCCCCCCCCCccCCHHHHHHHHHHHHHHHhhc---------CCCcc
Confidence 999 99999999999999999999999999999999999999999999999999999888877643 23589
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCcccccccceeCCC
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
+||||||||||+|+++|.++++.++++.|+++|.|||||||||++|.+.++++. ++++|++|||++|++.|+++||+++
T Consensus 162 ~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~ 241 (356)
T PRK14455 162 HIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINR 241 (356)
T ss_pred eEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCccc
Confidence 999999999999999999999999986799999999999999999999898886 4678999999999999999999999
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHH
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~ 319 (354)
++++++|++++++|.+.+ +++|+|||+||||+||+++|+++|++|+++ ++++||||||||+++.+|++|+.+++.
T Consensus 242 ~~~l~~Il~~l~~~~~~~-~~~v~iey~lI~gvNDs~ed~~~La~ll~~----l~~~VnLIPynp~~~~ky~~ps~e~l~ 316 (356)
T PRK14455 242 AYPLEKLMEAIEYYIEKT-NRRVTFEYILLGGVNDQVEHAEELADLLKG----IKCHVNLIPVNPVPERDYVRTPKEDIF 316 (356)
T ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhc----CCCcEEEEecCcCCCCCCcCCCHHHHH
Confidence 999999999999998766 479999999999999999999999999998 678999999999999999999999999
Q ss_pred HHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+|+++|.++|++|++|+++|+||+||||||+.+
T Consensus 317 ~f~~~L~~~gi~v~ir~~~g~di~aaCGqL~~~ 349 (356)
T PRK14455 317 AFEDTLKKNGVNCTIRREHGTDIDAACGQLRAK 349 (356)
T ss_pred HHHHHHHHCCCcEEEeCCCCcchhhcCccchhh
Confidence 999999999999999999999999999999875
No 14
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4e-93 Score=697.19 Aligned_cols=340 Identities=39% Similarity=0.632 Sum_probs=317.7
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccc-----cCC
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQIS-----FDG 75 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s-----~dg 75 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|++|+++|.+..++++..+.| .||
T Consensus 17 ~~~~~~~~~~el~~~~~~~g~~~~r~~qi~~w~y~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~~~~dg 96 (368)
T PRK14456 17 LQNIRNLRRQELTELLARLGEPAWRAAQLHQWLFSHRALSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETMEGSPAGP 96 (368)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHhccccHHHHHHHhcceecCCcceEEEEeeccCCCCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999988 577
Q ss_pred ceeEEEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCc
Q psy9577 76 TRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQ 154 (354)
Q Consensus 76 t~k~l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~ 154 (354)
|+||||++. |..||||+||.+++.|+|+|+|+||||+|.||+++.+|+.||||++||++|+..+...+... .
T Consensus 97 t~K~l~~l~dg~~iEtV~i~~~~~~t~ciSsq~GCnl~C~FC~tg~~g~~rnLt~~EI~~qv~~~~~~~~~~-------~ 169 (368)
T PRK14456 97 TEKLLIKLPDGELVETVLIPGPERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFALSDMLAER-------N 169 (368)
T ss_pred eEEEEEEcCCCCEEEEEEEecCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh-------h
Confidence 999999999 99999999999999999999999999999999999999999999999999998765544321 0
Q ss_pred CceeEEeeeeeccCccccccccccceeeeeecc-ccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccc
Q psy9577 155 GKRQITNIVMMGMGEPLLNYKSTIGALKLILSD-HAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRN 232 (354)
Q Consensus 155 gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~-~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~ 232 (354)
.+..+++||||||||||+|+++|.++++.+++. .++++|.++|||||||++|.+++|++.. ++.|+|||||++++.|+
T Consensus 170 ~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~ 249 (368)
T PRK14456 170 RERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRE 249 (368)
T ss_pred ccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHH
Confidence 123589999999999999999999999999985 6789999999999999999999999875 56899999999999999
Q ss_pred cceeCCC-cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc
Q psy9577 233 KLVPISK-KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311 (354)
Q Consensus 233 ~l~p~~~-~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~ 311 (354)
+|||+++ +|++++|++++++|...+ +++|+|||+||+|+||+++|+.+|++|+++ +.++||||||||+++.+|+
T Consensus 250 ~i~P~~~~~~~l~~l~~~i~~~~~~~-g~~V~ieyvLI~GvNDs~eda~~L~~~l~~----~~~~VnlIpyn~~~~~~~~ 324 (368)
T PRK14456 250 RLMPQAARDYPLDELREALIGYASKT-GEPVTLVYMLLEGINDSPEDARKLIRFASR----FFCKINLIDYNSIVNIKFE 324 (368)
T ss_pred HhccccCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEEEcCCCCCHHHHHHHHHHHhc----CCCeeEEeeeccCCCCCCC
Confidence 9999985 899999999999988777 479999999999999999999999999999 7799999999999999999
Q ss_pred cccchhHHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 312 ~p~~e~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+|+.+.+++|+++|+++|++|+||+++|+||+||||||+.+
T Consensus 325 ~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 325 PVCSSTRERFRDRLLDAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEeeCCCCcchhhcCCcchhc
Confidence 99999999999999999999999999999999999999875
No 15
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=7.1e-93 Score=692.43 Aligned_cols=334 Identities=40% Similarity=0.696 Sum_probs=316.8
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++||||||++|++|+++|.+..++++..+.|.|||+|||
T Consensus 4 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 83 (349)
T PRK14463 4 KTDIKNLTLQELEAFLAGQGKERFRAKQIFKWLYQRDARSFAEMTNLSKDLRAELEETARISNLEPEAVEVSRDGTRKYL 83 (349)
T ss_pred ccccccCCHHHHHHHHHHcCCCchHHHHHHHHHHHhCCCCHHHhcccCHHHHHhhcCCeeecCcceeEEEEcCCCcEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeE
Q psy9577 81 FHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQI 159 (354)
Q Consensus 81 ~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i 159 (354)
|+++ |+.||||+||+.+|.|+|||+|+||+++|.||+++.+++.|++|++||++|+..+... ..+
T Consensus 84 ~~~~dg~~iE~V~~~~~~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~--------------~~i 149 (349)
T PRK14463 84 FRLEDGNAVESVLIPDEDRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRD--------------VPV 149 (349)
T ss_pred EEcCCCCeEEEEEEEecCCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhc--------------CCc
Confidence 9999 9999999999999999999999999999999999998899999999999998764331 247
Q ss_pred EeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCC
Q psy9577 160 TNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 160 ~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
++||||||||||+|+++++++++.++++.|+++|.++++|||||++|.+.++++...++|++||||++++.|++|||+|+
T Consensus 150 ~~IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink 229 (349)
T PRK14463 150 RNIVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVTVNLAVSLNATTDEVRDRIMPVNR 229 (349)
T ss_pred cEEEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhccCeEEEEeCCCCCHHHHHHhcCccc
Confidence 89999999999999999999999999778999999999999999999998988766678999999999999999999999
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHH
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~ 319 (354)
+++++++++++++|...+ +++|+|||+||+|+||+++|+++|++|+++ ++++||||||||+++..|++|+.++++
T Consensus 230 ~~~l~~l~~a~~~~~~~~-~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~----l~~~vnlIPyn~~~~~~~~~ps~e~i~ 304 (349)
T PRK14463 230 RYPLAELLAACKAFPLPG-RRKITIEYVMIRGLNDSLEDAKRLVRLLSD----IPSKVNLIPFNEHEGCDFRSPTQEAID 304 (349)
T ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhc----cCceEEEEecCCCCCCCCCCCCHHHHH
Confidence 999999999999998776 479999999999999999999999999999 678999999999999999999999999
Q ss_pred HHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
+|+++|+++|++|++|+++|+||+||||||+.+.
T Consensus 305 ~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~ 338 (349)
T PRK14463 305 RFHKYLLDKHVTVITRSSRGSDISAACGQLKGKL 338 (349)
T ss_pred HHHHHHHHCCceEEEeCCCCcchhhccCcccccc
Confidence 9999999999999999999999999999998763
No 16
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=5.2e-93 Score=689.31 Aligned_cols=329 Identities=28% Similarity=0.434 Sum_probs=310.4
Q ss_pred cCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEEEec
Q psy9577 4 LLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83 (354)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~~~ 83 (354)
.++|+++||++++.++|+|+|||+|||+|+|++++. |++|||||+++|++|++.|.+..+++++.+.|.|||+||||++
T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~-~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~d~t~k~l~~l 79 (336)
T PRK14470 1 MLHLSGQDSRALARPAGISLEDARRITGAVIGRGAP-LRSARNVRRSVLDEVDALATPGELRLVERVDAKDGFRKYLFEL 79 (336)
T ss_pred CCCCCHHHHHHHHHHcCCCcHHHHHHHHHHHhCCCC-HHHhccCCHHHHHHHhcccccCCceEEEEEEcCCCcEEEEEEc
Confidence 368999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred C-CceeEEEeeec-CCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEe
Q psy9577 84 K-KNIIETVFIPE-KNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITN 161 (354)
Q Consensus 84 ~-g~~iE~v~i~~-~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~ 161 (354)
. |..||||+||+ ..|.|+|||||+|||++|.||++|++++.|+++++||++|+..+.... +.++++
T Consensus 80 ~dg~~iE~V~ip~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~------------~~~i~n 147 (336)
T PRK14470 80 PDGLRVEAVRIPLFDTHHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADS------------ERPITG 147 (336)
T ss_pred CCCCEEEEEeccccCCCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhc------------CCCCCE
Confidence 9 99999999995 679999999999999999999999999999999999999998654422 236899
Q ss_pred eeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccccceeCCCc
Q psy9577 162 IVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKK 240 (354)
Q Consensus 162 Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~~~~ 240 (354)
||||||||||+|+++|.++++.++++.|+++|.++|+|||||+.|.+++++++. ++.|++||||++++.|++|||++++
T Consensus 148 IvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~ 227 (336)
T PRK14470 148 VVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQG 227 (336)
T ss_pred EEEEecCccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCcccc
Confidence 999999999999999999999999989999999999999999999999998865 5789999999999999999999999
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHH
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKI 320 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~ 320 (354)
++++++++++++|.+. + +++++||++|+|+||+++|+++|++|+++ ++++||+|||||.++ .|++|+.+++++
T Consensus 228 ~~le~il~ai~~~~~~-~-rri~ieyvLI~GvNDseeda~~La~llk~----l~~~vnlI~~N~~~~-~~~~p~~~~i~~ 300 (336)
T PRK14470 228 FPLDELVEAIREHAAL-R-GRVTLEYVMISGVNVGEEDAAALGRLLAG----IPVRLNPIAVNDATG-RYRPPDEDEWNA 300 (336)
T ss_pred CCHHHHHHHHHHHHHh-C-CCeEEEEEEEecccCCHHHHHHHHHHHhc----CCCeEEEeccCCCCC-CccCCCHHHHHH
Confidence 9999999999999866 3 69999999999999999999999999998 789999999999766 899999999999
Q ss_pred HHHHH--hhCceeEEEecccccchhhhhhhcccc
Q psy9577 321 FAKIL--MNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 321 f~~~l--~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
|+++| +++|+.|++|+++|+||+||||||+.+
T Consensus 301 f~~~l~~~~~g~~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 301 FRDALARELPGTPVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred HHHHHHHccCCeEEEEECCCCCChHhccCccccc
Confidence 99999 589999999999999999999999875
No 17
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=5.8e-93 Score=691.63 Aligned_cols=331 Identities=35% Similarity=0.546 Sum_probs=305.9
Q ss_pred CCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhcee--eeecCcccccccccCCceeEEEec
Q psy9577 6 DLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSV--YIKAPHIMSDQISFDGTRKWIFHV 83 (354)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~--~~~~~~~~~~~~s~dgt~k~l~~~ 83 (354)
.++++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|+.|++.| .+..++++..+.| |||+||||++
T Consensus 4 ~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~~~s-dgt~K~l~~l 82 (347)
T PRK14453 4 KTKYGKMKQILSNLKLPDYRYEQITKAIFKQRIDNFEDMHILPKALRESLINEFGKNVLSVIPVFEQDS-KQVTKVLFEL 82 (347)
T ss_pred cCCHHHHHHHHHHcCCCcHHHHHHHHHHHhcCCCCHHHhccCCHHHHHHHHHHHhhccCCceeEEEEec-CCeEEEEEEc
Confidence 478999999999999999999999999999999999999999999999999998 6778888888888 8999999999
Q ss_pred C-CceeEEEeeecCCC-ceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEe
Q psy9577 84 K-KNIIETVFIPEKNR-NTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITN 161 (354)
Q Consensus 84 ~-g~~iE~v~i~~~~r-~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~ 161 (354)
+ |..||||+||+.+| .|+|||||+||+|+|.||++|++|+.||||++||++|+..+.. . +.++++
T Consensus 83 ~dg~~iE~V~i~~~~~~~t~CvssqvGC~~~C~FC~tg~~g~~rnLt~~EIv~qv~~~~~----~---------~~~i~~ 149 (347)
T PRK14453 83 TDGERIEAVGLKYKQGWESFCISSQCGCGFGCRFCATGSIGLKRNLTADEITDQLLYFYL----N---------GHRLDS 149 (347)
T ss_pred CCCCEEEEEEEeecCCceeEEEecCCCcCCCCCCCCCCCCCCcccCCHHHHHHHHHHHHh----c---------CCCcce
Confidence 9 99999999999886 9999999999999999999999999999999999999985422 1 235899
Q ss_pred eeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccccceeCCCc
Q psy9577 162 IVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKK 240 (354)
Q Consensus 162 Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~~~~ 240 (354)
||||||||||+| +++.++++.+++..++++|.|+|||||+|++|.++++.+.+ .++|++|||++|++.|+++||++++
T Consensus 150 IvfmGmGEPLln-~~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~ 228 (347)
T PRK14453 150 ISFMGMGEALAN-PELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKR 228 (347)
T ss_pred EEEeecCCccCC-HHHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCcccc
Confidence 999999999999 56999999999988999999999999999999889998875 5789999999999999999999999
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcc-ccceeeeeeeCCCCCCC--Ccccccchh
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI-LTSCKINLIPFNCFPNS--NLICSKNSR 317 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~-~~~~~vnLIp~n~~~~~--~~~~p~~e~ 317 (354)
++++++++++++|.... +++|+|||+||||+||+++|+++|++|+++++. ...++||||||||+++. +|++|+.++
T Consensus 229 ~~L~~ll~~~~~~l~~~-~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~ 307 (347)
T PRK14453 229 FPLNEVMKTLDEHIRHT-GRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQ 307 (347)
T ss_pred ccHHHHHHHHHHHHHhc-CCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHH
Confidence 99999999999999877 479999999999999999999999999998310 02589999999999876 499999999
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+++|+++|+++|++|++|+++|+||+||||||+++
T Consensus 308 v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGqL~~~ 342 (347)
T PRK14453 308 IKQFCSTLKSAGISVTVRTQFGSDISAACGQLYGN 342 (347)
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCchhhccccchhh
Confidence 99999999999999999999999999999999875
No 18
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.7e-92 Score=682.80 Aligned_cols=322 Identities=27% Similarity=0.548 Sum_probs=303.5
Q ss_pred CChhHHHHHHHHhCCCccchHHHH-HHHHHhCcCc--chhhhhhHHHHHHhhhce-eeeecCccccccc-ccCCceeEEE
Q psy9577 7 LSPLKFVNYCKELGEMPFRAKQLQ-KWIHKFGVSD--FNKMTDLSMSLRKKLKNS-VYIKAPHIMSDQI-SFDGTRKWIF 81 (354)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~r~~qi~-~~~~~~~~~~--~~~~~~l~~~~r~~l~~~-~~~~~~~~~~~~~-s~dgt~k~l~ 81 (354)
|+++||++++.++|+|+|||+||| +|+|++++.+ |++||||||++|++|++. |.+..++++..+. |.|||+||||
T Consensus 1 ~~~~el~~~~~~~g~~~~ra~Qi~~~w~~~~~~~~~~~~~mt~l~~~~r~~L~~~~~~~~~~~~~~~~~~s~dgt~K~l~ 80 (344)
T PRK14464 1 MRIQDLRQRLRALGAKPCHEGRILRAWLQGLPLDTRRQRAEDFLPLALREALPALEAELDGLARLRSEHPGEDGSARLLV 80 (344)
T ss_pred CCHHHHHHHHHHcCCChhHHHHHHHHHHHhCCCCccchhhhccCCHHHHHHHHhcCeeccCcceEEEEEecCCCcEEEEE
Confidence 678999999999999999999999 5999999999 799999999999999999 8999999777777 5799999999
Q ss_pred ecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577 82 HVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT 160 (354)
Q Consensus 82 ~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~ 160 (354)
+++ |..||||+||. .|+|||||+||+|+|.||++|.+|+.||++++||++|+..+... ..++
T Consensus 81 ~l~Dg~~iEtV~i~~---~t~CvSsQvGC~~~C~FC~tg~~g~~RnLs~~EI~~Qv~~~~~~--------------~~i~ 143 (344)
T PRK14464 81 ELADGQMVESVLLPR---DGLCVSTQVGCAVGCVFCMTGRSGLLRQLGSAEIVAQVVLARRR--------------RAVK 143 (344)
T ss_pred EcCCCCEEEEEEecC---CcEEEEccCCcCCCCCcCcCCCCCCCCCCCHHHHHHHHHHHHhc--------------CCCC
Confidence 999 99999999994 69999999999999999999999999999999999999875541 3589
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCcccccccceeCCC
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
+||||||||||+|+++|+++++.+++. .+||++++||||+|.+|.+.+|+++ ..++|++||||++++.|++|||+++
T Consensus 144 nIVfmGmGEPl~N~d~vl~ai~~l~~~--~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~ 221 (344)
T PRK14464 144 KVVFMGMGEPAHNLDNVLEAIDLLGTE--GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAP 221 (344)
T ss_pred EEEEeccCcccCCHHHHHHHHHHhhch--hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccC
Confidence 999999999999999999999999985 4789999999999999999999985 4678999999999999999999999
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHH
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~ 319 (354)
+|++++|++++++|.+.+ +++|++||+||+||||+++++++|++++++ .+++||||||||+++..|.+|+.++++
T Consensus 222 ~~~l~el~~a~~~~~~~~-grri~~EyvLl~GVNDs~e~a~~L~~~l~~----~~~~vNLIPyN~v~g~~~~rp~~~~i~ 296 (344)
T PRK14464 222 RIAPEELVELGEAYARAT-GYPIQYQWTLLEGVNDSDEEMDGIVRLLKG----KYAVMNLIPYNSVDGDAYRRPSGERIV 296 (344)
T ss_pred CCCHHHHHHHHHHHHHHH-CCEEEEEEEEeCCCCCCHHHHHHHHHHHhc----cccccceecCCccCCCCccCCCHHHHH
Confidence 999999999999999887 579999999999999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+|++.|+++|+.|++|+++|+||+||||||+.+
T Consensus 297 ~f~~~L~~~gi~~tiR~~~G~di~aACGqL~~~ 329 (344)
T PRK14464 297 AMARYLHRRGVLTKVRNSAGQDVDGGCGQLRAR 329 (344)
T ss_pred HHHHHHHHCCceEEEECCCCCchhhcCcchhhh
Confidence 999999999999999999999999999999865
No 19
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.4e-91 Score=678.83 Aligned_cols=331 Identities=38% Similarity=0.624 Sum_probs=309.6
Q ss_pred cccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEEE
Q psy9577 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIF 81 (354)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~ 81 (354)
.+|++++++|| |+|+|||+|||+|+|++++.||++|||||+++|+.|+++|.+..+++++.+.|.|||+||||
T Consensus 2 ~~~~~~~~~~~-------~~~~~r~~qi~~~~~~~~~~~~~~m~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l~ 74 (343)
T PRK14468 2 QPLLELHPDAL-------PGEGYRRAQLAEWLYAQGARTFDAMTNLPKALRAELAREYRLSPFREVETFRSQDGSVKYLF 74 (343)
T ss_pred cccccCCHHHc-------CCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCceEEEEEEcCCCcEEEEE
Confidence 46889999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577 82 HVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT 160 (354)
Q Consensus 82 ~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~ 160 (354)
+++ |..||||+||+.+|.|+|||+|+|||++|.||+++.+|+.|+||++||++|+..+....+. . ..+++
T Consensus 75 ~~~dg~~iE~V~i~~~~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~--------~-~~~i~ 145 (343)
T PRK14468 75 TLLDGKQTEAVYMPYLDRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGI--------S-PREIR 145 (343)
T ss_pred ECCCCCEEEEEEEEecCCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCc--------C-cCCcc
Confidence 999 9999999999999999999999999999999999999999999999999999876442211 0 13689
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhc-CcceeEEeeccCcccccccceeCCC
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
+||||||||||+|+++|+++++.+.++.|+++++|+||+||||+.+.++++++. +++.|++||||+|++.|+++||+++
T Consensus 146 ~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~ 225 (343)
T PRK14468 146 NVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAH 225 (343)
T ss_pred EEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccc
Confidence 999999999999999999999999877899999999999999999889999876 4668999999999999999999999
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHH
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIK 319 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~ 319 (354)
+++++++++++++|.+.+ +++|+|||+||||+||+++|+.+|++++++ +.++||||||||+++..|++|+.++++
T Consensus 226 ~~~l~~ll~~l~~~~~~~-~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~----~~~~VnLIPynp~~~~~~~~ps~e~i~ 300 (343)
T PRK14468 226 RYSIAEIMAAVRHYQAVT-GRRVTLEYTMLKGVNDHLWQAELLADLLRG----LVSHVNLIPFNPWEGSPFQSSPRAQIL 300 (343)
T ss_pred cCCHHHHHHHHHHHHHhc-CCeEEEEEEEeCCCcCCHHHHHHHHHHHhc----CCcEEEEEcCCCCCCCCCCCCCHHHHH
Confidence 999999999999888776 469999999999999999999999999999 678999999999998899999999999
Q ss_pred HHHHHHhhCceeEEEecccccchhhhhhhccccC
Q psy9577 320 IFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~~ 353 (354)
+|+++|.++|+.|++|+++|+||+||||||+.+.
T Consensus 301 ~f~~~L~~~Gi~vtiR~~~g~di~aaCGqL~~~~ 334 (343)
T PRK14468 301 AFADVLERRGVPVSVRWSRGRDVGAACGQLALKR 334 (343)
T ss_pred HHHHHHHHCCCeEEEeCCCCcchhhcCCccccCC
Confidence 9999999999999999999999999999998753
No 20
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.3e-90 Score=673.63 Aligned_cols=334 Identities=41% Similarity=0.667 Sum_probs=314.3
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCccccccccc-CCceeE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF-DGTRKW 79 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~-dgt~k~ 79 (354)
+.+|++|+++||++++.++|+|+|||+|||+|+|++++.+|++|||||+++|+.|++.|.+..++++..+.|. |||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~s~~d~t~k~ 80 (343)
T PRK14469 1 MKNILDLSYEELVSEITELGLEKYRADQILDWIYKKKVFNFDEMTNLSKDHRALLSEHFSIPFPKLLDKQVSKIDGTTKF 80 (343)
T ss_pred CCCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHhcCCCCHHHhccccHHHHHHHhhccccCCceEEEEEeccCCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999995 999999
Q ss_pred EEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCcee
Q psy9577 80 IFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ 158 (354)
Q Consensus 80 l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~ 158 (354)
||++. |..||||+||+++|.|+|||||+||||+|.||++|.+++.|+||++||++|+..+..++. ..
T Consensus 81 l~~~~dg~~ie~v~~~~~~~~t~cissq~GC~l~C~fC~tg~~g~~r~lt~~EI~~qv~~~~~~~~------------~~ 148 (343)
T PRK14469 81 LWELEDGNTIESVMLFHPDRITACISTQVGCPVKCIFCATGQSGFVRNLTTGEIVSQILAMEKEEK------------KK 148 (343)
T ss_pred EEEcCCCCEEEEEEEecCCCeEEEEEecCCCCCcCcCCCCCCCCccccCCHHHHHHHHHHHHHhcc------------CC
Confidence 99999 999999999999999999999999999999999999999999999999999987654331 35
Q ss_pred EEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccccceeC
Q psy9577 159 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPI 237 (354)
Q Consensus 159 i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~ 237 (354)
+++||||||||||+|+++|.++++.++++.|.++|.++|||||||+.+.+++|++.. ++.|++||||++++.|+++||+
T Consensus 149 v~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~ 228 (343)
T PRK14469 149 VGNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPL 228 (343)
T ss_pred cCeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCc
Confidence 789999999999999999999999999888888999999999999988899998874 6689999999999999999999
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchh
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR 317 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~ 317 (354)
++++++++++++++++...+ +++|+|+|++|+|+||+++|+++|++++++ ..++||+|||||..+ ++++|+.++
T Consensus 229 ~~~~~l~~Il~~l~~~~~~~-~~~v~i~yvlI~g~NDs~ed~~~La~llk~----~~~~VnLIpynp~~~-~~~~ps~e~ 302 (343)
T PRK14469 229 NKKYSIEEIINAVKIYQKKT-GNRVTIEYILIKGFNDEIEDAKKLAELLKG----LKVFVNLIPVNPTVP-GLEKPSRER 302 (343)
T ss_pred CCCCCHHHHHHHHHHHHHHh-CCeEEEEEEEECCCCCCHHHHHHHHHHHhc----cCcEEEEEecCCCCc-cCCCCCHHH
Confidence 99999999999999988766 469999999999999999999999999998 678999999999876 799999999
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+.+|.++|+++|++|++|.++|+||+||||||+.+
T Consensus 303 l~~f~~~l~~~gi~vtvr~~~g~di~aaCGqL~~~ 337 (343)
T PRK14469 303 IERFKEILLKNGIEAEIRREKGSDIEAACGQLRRR 337 (343)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcchhhcCccchhh
Confidence 99999999999999999999999999999999875
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.97 E-value=2.1e-32 Score=255.42 Aligned_cols=206 Identities=18% Similarity=0.272 Sum_probs=164.7
Q ss_pred eeEEeccccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
..++.+..|||++|.||+++.. ...+.+|++||++++.....++.. ...+|+|+| ||||+|+++
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~------------~~~~V~~sG-GEPll~~~~ 87 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNA------------SGGGVTASG-GEAILQAEF 87 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhc------------CCCeEEEeC-ccHhcCHHH
Confidence 3445556899999999998642 235789999999998876554432 123699999 999999999
Q ss_pred ccceeeeeeccccccccceeEEeecccchhc----hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPM----IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~----i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+.++++.+++ .|+ +++++|||+.+. ++++++..+ .+++|+|+++++.|+++++.+ .+.++++++.
T Consensus 88 ~~~l~~~~k~-~g~-----~i~l~TNG~~~~~~~~~~~ll~~~d-~v~islk~~~~e~~~~~~g~~----~~~~l~~i~~ 156 (246)
T PRK11145 88 VRDWFRACKK-EGI-----HTCLDTNGFVRRYDPVIDELLDVTD-LVMLDLKQMNDEIHQNLVGVS----NHRTLEFARY 156 (246)
T ss_pred HHHHHHHHHH-cCC-----CEEEECCCCCCcchHHHHHHHHhCC-EEEECCCcCChhhcccccCCC----hHHHHHHHHH
Confidence 9999999997 687 799999998753 333333333 578999999999999998753 4678888876
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC------------cccccchhHHH
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN------------LICSKNSRIKI 320 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~------------~~~p~~e~l~~ 320 (354)
+.+ . +.++.++++++||+||+++++++|++|+++++ ...+++++|||+.+..+ +++|+.+++++
T Consensus 157 l~~-~-g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 232 (246)
T PRK11145 157 LAK-R-NQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMG--NIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMER 232 (246)
T ss_pred HHh-C-CCcEEEEEEEECCCCCCHHHHHHHHHHHHhcC--CcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHH
Confidence 654 3 36899999999999999999999999999843 23689999999987543 46799999999
Q ss_pred HHHHHhhCceeEE
Q psy9577 321 FAKILMNSGIFVT 333 (354)
Q Consensus 321 f~~~l~~~gi~v~ 333 (354)
|.+++++.|++++
T Consensus 233 ~~~~~~~~g~~~~ 245 (246)
T PRK11145 233 VKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHcCCccc
Confidence 9999999998874
No 22
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.97 E-value=7.5e-31 Score=240.13 Aligned_cols=190 Identities=15% Similarity=0.265 Sum_probs=161.5
Q ss_pred ecCCCCcc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccc
Q psy9577 116 CSTGRQGF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSR 194 (354)
Q Consensus 116 C~tg~~g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~ 194 (354)
|.++.... ++.+|++|+++++.+++.||+.+ +| +|||+| ||||+|++++.++++.+++ .|+
T Consensus 7 C~~~a~~~~g~~~t~eel~~~~~~~~~f~~~s-------gg-----GVt~SG-GEPllq~~fl~~l~~~~k~-~gi---- 68 (213)
T PRK10076 7 CPSGAFERIGRDITLDALEREVMKDDIFFRTS-------GG-----GVTLSG-GEVLMQAEFATRFLQRLRL-WGV---- 68 (213)
T ss_pred chhhHHHhcCcccCHHHHHHHHHhhhHhhcCC-------CC-----EEEEeC-chHHcCHHHHHHHHHHHHH-cCC----
Confidence 55555443 57799999999999999998754 33 599999 9999999999999999997 788
Q ss_pred eeEEeecccchhc--hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCC
Q psy9577 195 RHVILSTSGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGI 272 (354)
Q Consensus 195 r~itvsT~G~~p~--i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~Gv 272 (354)
+++++|||+.|. ++++++..+ .+.+|+|++|++.|+++++. +++.++++++.+.+. +.++++++++|||+
T Consensus 69 -~~~leTnG~~~~~~~~~l~~~~D-~~l~DiK~~d~~~~~~~tG~----~~~~il~nl~~l~~~--g~~v~iR~~vIPg~ 140 (213)
T PRK10076 69 -SCAIETAGDAPASKLLPLAKLCD-EVLFDLKIMDATQARDVVKM----NLPRVLENLRLLVSE--GVNVIPRLPLIPGF 140 (213)
T ss_pred -CEEEECCCCCCHHHHHHHHHhcC-EEEEeeccCCHHHHHHHHCC----CHHHHHHHHHHHHhC--CCcEEEEEEEECCC
Confidence 999999999874 666766655 47899999999999999975 468999999987654 36999999999999
Q ss_pred CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc------------ccccchhHHHHHHHHhhCceeEEE
Q psy9577 273 NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL------------ICSKNSRIKIFAKILMNSGIFVTI 334 (354)
Q Consensus 273 NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~------------~~p~~e~l~~f~~~l~~~gi~v~i 334 (354)
||++++++++++|+++++ . ..++|+|||+++..+| ++|+.+.++++.+++++.|+++++
T Consensus 141 nd~~e~i~~ia~~l~~l~--~-~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 141 TLSRENMQQALDVLIPLG--I-KQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CCCHHHHHHHHHHHHHcC--C-ceEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 999999999999999854 2 4799999999876443 468889999999999999999986
No 23
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.96 E-value=2e-29 Score=253.55 Aligned_cols=202 Identities=18% Similarity=0.357 Sum_probs=161.3
Q ss_pred eEEeccccceEeeeeecCCC-------Ccc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc
Q psy9577 101 LCISTQVGCAINCIFCSTGR-------QGF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172 (354)
Q Consensus 101 lcvSsq~GC~~~C~fC~tg~-------~g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll 172 (354)
+-++...|||++|.||.++. .+. .+.||++|+++++..+..++. .++.|+|+|+||||+
T Consensus 26 ~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~-------------~~~~V~iaG~GEPLl 92 (442)
T TIGR01290 26 MHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIP-------------QLSVVGIAGPGDPLA 92 (442)
T ss_pred EEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcC-------------CCCEEEEecCCCccc
Confidence 33456789999999999852 233 478999999999987655431 356799999999999
Q ss_pred ccccccceeeeeeccc-cccccceeEEeecccch-h-chHhhhhcCcceeEEeeccCcccccccceeC----CCcCc---
Q psy9577 173 NYKSTIGALKLILSDH-AYGLSRRHVILSTSGII-P-MIDKLAQECPVELAVSLHASNNNLRNKLVPI----SKKYP--- 242 (354)
Q Consensus 173 n~~~v~~~l~~l~~~~-g~~~~~r~itvsT~G~~-p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~----~~~~~--- 242 (354)
|++++++.++.+++.. |+ +++|+|||+. | .+++|++.....++||||++|++.|++|+|. +++|.
T Consensus 93 ~~e~~~~~l~~~~~~~~~i-----~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~ 167 (442)
T TIGR01290 93 NIGKTFQTLELVARQLPDV-----KLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGRE 167 (442)
T ss_pred CccccHHHHHHHHHhcCCC-----eEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcc
Confidence 9999999999999742 55 8999999975 3 3777777643378999999999999998764 22232
Q ss_pred -----hHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCC--CCCc-----
Q psy9577 243 -----LKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP--NSNL----- 310 (354)
Q Consensus 243 -----l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~--~~~~----- 310 (354)
++.++++++.+.+. +..|+++++||||+|| +++.++++++++++ ...+|++|||+.+ +..|
T Consensus 168 ~~~il~e~~l~~l~~l~~~--G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg---~~~~nl~p~~~~p~~G~~~~~~~~ 240 (442)
T TIGR01290 168 AADLLIERQLEGLEKLTER--GILVKVNSVLIPGIND--EHLVEVSKQVKELG---AFLHNVMPLISAPEHGTVYGLNGQ 240 (442)
T ss_pred hHHHHHHHHHHHHHHHHhC--CCeEEEEEEeeCCcCH--HHHHHHHHHHHhCC---CcEEEeecCCCccccCCccCcCCC
Confidence 45667999877654 4689999999999999 69999999999854 2458999999887 5454
Q ss_pred ccccchhHHHHHHHHhh
Q psy9577 311 ICSKNSRIKIFAKILMN 327 (354)
Q Consensus 311 ~~p~~e~l~~f~~~l~~ 327 (354)
++|+.+++++|++.+++
T Consensus 241 ~~ps~e~l~~~~~~~~~ 257 (442)
T TIGR01290 241 REPDPDELAALRDRLEM 257 (442)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 78999999999998875
No 24
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-27 Score=224.76 Aligned_cols=216 Identities=17% Similarity=0.230 Sum_probs=168.8
Q ss_pred eeEEEeeecCCCceeEEeccccceEeeeeecCCCCcc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeee
Q psy9577 87 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMM 165 (354)
Q Consensus 87 ~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~ 165 (354)
.||+.-+-+..+....+-+..|||++|.||++..... ++..+.+++..+++....++.. .+++|+|+
T Consensus 23 ~ie~~~~~d~~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~------------~~~gvt~S 90 (260)
T COG1180 23 PIEKKPLVDGPGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSE------------SGGGVTFS 90 (260)
T ss_pred cccccCCcCCCCcEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcC------------CCCEEEEE
Confidence 4555444433332333335599999999999986554 3677888888777666555432 35679999
Q ss_pred ccCccccccccccceeeeeeccccccccceeEEeecccchhc--hHhhhhcCcceeEEeeccCcccccccceeCCCcCch
Q psy9577 166 GMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPL 243 (354)
Q Consensus 166 GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~--i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l 243 (354)
| |||++|++++.++++.+++ .|+ +++++|||+.+. .+++++.++ .+++|||+.+++.|+++++.. .
T Consensus 91 G-GEP~~q~e~~~~~~~~ake-~Gl-----~~~l~TnG~~~~~~~~~l~~~~D-~v~~DlK~~~~~~y~~~tg~~----~ 158 (260)
T COG1180 91 G-GEPTLQAEFALDLLRAAKE-RGL-----HVALDTNGFLPPEALEELLPLLD-AVLLDLKAFDDELYRKLTGAD----N 158 (260)
T ss_pred C-CcchhhHHHHHHHHHHHHH-CCC-----cEEEEcCCCCCHHHHHHHHhhcC-eEEEeeccCChHHHHHHhCCC----c
Confidence 9 9999999999999999998 688 999999999864 456666655 588999999999999998653 4
Q ss_pred HHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCccc-ccchhHHHHH
Q psy9577 244 KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC-SKNSRIKIFA 322 (354)
Q Consensus 244 ~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~-p~~e~l~~f~ 322 (354)
+.++++++.+.+ . +..|.+++++|||+||++++++++++|+++++ ....+.++||||....++.+ +..++++++.
T Consensus 159 ~~vl~~~~~l~~-~-g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~--~~~p~~~l~fhp~~~~~~~p~~~~~~le~~~ 234 (260)
T COG1180 159 EPVLENLELLAD-L-GVHVEIRTLVIPGYNDDEEEIRELAEFIADLG--PEIPIHLLRFHPDYKLKDLPPTPVETLEEAK 234 (260)
T ss_pred HHHHHHHHHHHc-C-CCeEEEEEEEECCCCCCHHHHHHHHHHHHhcC--CcccEEEeccccCccccccCCCcHHHHHHhH
Confidence 899999998775 3 47999999999999999999999999999744 34678899999998888865 4457777777
Q ss_pred HHHhhCce
Q psy9577 323 KILMNSGI 330 (354)
Q Consensus 323 ~~l~~~gi 330 (354)
+..++.+.
T Consensus 235 ~~a~~~~~ 242 (260)
T COG1180 235 KLAKEEGL 242 (260)
T ss_pred hhhHHHHH
Confidence 77766554
No 25
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.94 E-value=1.3e-26 Score=214.68 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=168.3
Q ss_pred ceeEEEeeecCCCceeEEeccccceEeeeeecCCCCc---ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEee
Q psy9577 86 NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNI 162 (354)
Q Consensus 86 ~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g---~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~V 162 (354)
+.+|.+.+.++.+...++.+ .|||++|.||+++... ..+.++++++++++.....++.. ....|
T Consensus 3 ~~~~~~~~~~g~g~~~~v~~-~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~------------~~~~I 69 (235)
T TIGR02493 3 HSTESMGTVDGPGIRFVVFM-QGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKA------------SGGGV 69 (235)
T ss_pred eEEEeccccCCCCceEEEEE-CCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhc------------CCCeE
Confidence 46788888888788888777 5999999999976321 24679999999988766554421 12369
Q ss_pred eeeccCccccccccccceeeeeeccccccccceeEEeecccchh----chHhhhhcCcceeEEeeccCcccccccceeCC
Q psy9577 163 VMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP----MIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238 (354)
Q Consensus 163 vf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p----~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~ 238 (354)
+|+| ||||++++.+.++++.+++ .|+ ++++.|||+.. .+.++++..+ .+.+|+++.+++.|+++.+.
T Consensus 70 ~~~G-GEPll~~~~~~~li~~~~~-~g~-----~~~i~TNG~~~~~~~~~~~ll~~~d-~v~isl~~~~~~~~~~~~g~- 140 (235)
T TIGR02493 70 TFSG-GEPLLQPEFLSELFKACKE-LGI-----HTCLDTSGFLGGCTEAADELLEYTD-LVLLDIKHFNPEKYKKLTGV- 140 (235)
T ss_pred EEeC-cccccCHHHHHHHHHHHHH-CCC-----CEEEEcCCCCCccHHHHHHHHHhCC-EEEEeCCCCCHHHHHHHHCC-
Confidence 9999 9999999888899999987 676 78999999632 3455555444 57899999999999998653
Q ss_pred CcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC-----------
Q psy9577 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN----------- 307 (354)
Q Consensus 239 ~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~----------- 307 (354)
+++.++++++.+.+. +.++.++++++||+||+.+++.++++|++.++ ....+.++||+|.+.
T Consensus 141 ---~~~~v~~~i~~l~~~--g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~--~~~~~~~~p~~~~g~~~~~~~~~~~~ 213 (235)
T TIGR02493 141 ---SLQPTLDFAKYLAKR--NKPIWIRYVLVPGYTDSEEDIEALAEFVKTLP--NVERVEVLPYHQLGVYKWEALGIEYP 213 (235)
T ss_pred ---CcHHHHHHHHHHHhC--CCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCC--CCceEEecCCCcccHHHHHHcCCcCc
Confidence 578899999877543 36899999999999999999999999999854 235789999998652
Q ss_pred -CCcccccchhHHHHHHHHhhC
Q psy9577 308 -SNLICSKNSRIKIFAKILMNS 328 (354)
Q Consensus 308 -~~~~~p~~e~l~~f~~~l~~~ 328 (354)
..+.+|+.+++++++++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T TIGR02493 214 LEGVKPPNKEQLERAAEIFKEY 235 (235)
T ss_pred cCCCCCCCHHHHHHHHHHHhhC
Confidence 245789999999999988753
No 26
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.92 E-value=5.3e-25 Score=214.10 Aligned_cols=206 Identities=16% Similarity=0.208 Sum_probs=161.8
Q ss_pred ceeEEeccccceEeeeeecCCC----CcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGR----QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY 174 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~----~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~ 174 (354)
..+|+|.+.+||++|.||+.+. ....+.+|++||.+++..... ..+..|+|+| ||||++
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~gi~~I~~tG-GEPll~- 79 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVA---------------LGVRKVRLTG-GEPLLR- 79 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHH---------------CCCCEEEEEC-CCCcCc-
Confidence 4789999999999999999864 133678999999988754332 1367899999 999998
Q ss_pred ccccceeeeeeccccccccceeEEeecccch--hchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~--p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+.+.++++.+++..+. .+++|+|||.. +.++++.+.....|.||||+.+++.|+++++ ..++++++++++.
T Consensus 80 ~~l~~li~~i~~~~~~----~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~---~~~~~~vl~~i~~ 152 (331)
T PRK00164 80 KDLEDIIAALAALPGI----RDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITG---RDRLDQVLAGIDA 152 (331)
T ss_pred cCHHHHHHHHHhcCCC----ceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCC---CCCHHHHHHHHHH
Confidence 5678888888864332 38999999964 2344555544457999999999999999865 3679999999998
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC-CcccccchhHHHHHHHHhhCcee
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS-NLICSKNSRIKIFAKILMNSGIF 331 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~-~~~~p~~e~l~~f~~~l~~~gi~ 331 (354)
+.+.. ..+|.+++++++|+|| +++.++++++++ .++.+++|+|+|++.. .|..+.....+++.+.|++.|+.
T Consensus 153 ~~~~g-~~~v~i~~vv~~g~n~--~ei~~l~~~~~~----~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 225 (331)
T PRK00164 153 ALAAG-LTPVKVNAVLMKGVND--DEIPDLLEWAKD----RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWT 225 (331)
T ss_pred HHHCC-CCcEEEEEEEECCCCH--HHHHHHHHHHHh----CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCc
Confidence 87653 2389999999999999 589999999998 5678999999998754 45556666788888999888765
Q ss_pred EEEe
Q psy9577 332 VTIR 335 (354)
Q Consensus 332 v~ir 335 (354)
++.+
T Consensus 226 ~~~~ 229 (331)
T PRK00164 226 LQPR 229 (331)
T ss_pred cccc
Confidence 5554
No 27
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.91 E-value=8.7e-25 Score=211.85 Aligned_cols=212 Identities=17% Similarity=0.181 Sum_probs=159.8
Q ss_pred ccccceEeeeeecCCCCcc-------cccchhhhhhhheehhh-hhhhhhcCccc-C---CcCceeEEeeeeeccCcccc
Q psy9577 105 TQVGCAINCIFCSTGRQGF-------VRNLTVGEIIGQLWVTE-FKLRREKNIKI-N---SQGKRQITNIVMMGMGEPLL 172 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~g~-------~r~lt~~EIv~qv~~~~-~~~~~~~~~~~-~---~~gg~~i~~Vvf~GmGEPll 172 (354)
+..||+++|.||++..... .+..+++||++++.... .++...+..+. + -......++++|+|+||||+
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL 143 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL 143 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc
Confidence 4468999999999864221 45678999999998763 33321100000 0 00012367899998999999
Q ss_pred ccccccceeeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 173 n~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+ +++.++++.+++ .|+ ++.|.|||..|. ++++ ......+.||||+++++.|+++++......++.++++++
T Consensus 144 ~-p~l~eli~~~k~-~Gi-----~~~L~TNG~~~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~ 215 (322)
T PRK13762 144 Y-PYLPELIEEFHK-RGF-----TTFLVTNGTRPDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLE 215 (322)
T ss_pred h-hhHHHHHHHHHH-cCC-----CEEEECCCCCHHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 7 589999999997 677 899999998774 4555 333456899999999999999986423457899999999
Q ss_pred hhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc-----ccccchhHHHHHHHHh
Q psy9577 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL-----ICSKNSRIKIFAKILM 326 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~-----~~p~~e~l~~f~~~l~ 326 (354)
.+.+. +.++.+++++++|+||++++ ++++|++.++ +..|+++||++++...+ ..|+.+++.+|.+.+.
T Consensus 216 ~l~~~--~~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~---~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l~ 288 (322)
T PRK13762 216 LLPSK--KTRTVIRITLVKGYNMHDPE--GFAKLIERAN---PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKELA 288 (322)
T ss_pred HHHhC--CCCEEEEEEEECCcCccHHH--HHHHHHHHcC---CCEEEEECCeECCCccccccccCCcCHHHHHHHHHHHH
Confidence 87654 35899999999999998765 8999998843 46789999999987765 3488999999999998
Q ss_pred hC-cee
Q psy9577 327 NS-GIF 331 (354)
Q Consensus 327 ~~-gi~ 331 (354)
+. |+.
T Consensus 289 ~~~~~~ 294 (322)
T PRK13762 289 EYTGYE 294 (322)
T ss_pred HhcCCe
Confidence 76 444
No 28
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.90 E-value=1.2e-24 Score=208.31 Aligned_cols=179 Identities=16% Similarity=0.270 Sum_probs=143.4
Q ss_pred cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEeeccc
Q psy9577 124 VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSG 203 (354)
Q Consensus 124 ~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G 203 (354)
++.++.+++++++.....++.. ...+|+|+| ||||++++++.++++.+++ .|+ +++++|||
T Consensus 103 g~~~t~eel~~~i~~~~~~~~~------------~~~~V~~sG-GEPll~~~~l~~l~~~~k~-~g~-----~~~i~TnG 163 (295)
T TIGR02494 103 GEEMTVEEVMRVVLRDSIFYRN------------SGGGVTLSG-GEPLLQPEFALALLQACHE-RGI-----HTAVETSG 163 (295)
T ss_pred ccCCcHHHHHHHHHHHHHhccc------------CCCcEEeeC-cchhchHHHHHHHHHHHHH-cCC-----cEeeeCCC
Confidence 4567888888887765555432 123699999 9999999888999999987 677 89999999
Q ss_pred chhc--hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHH
Q psy9577 204 IIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIE 281 (354)
Q Consensus 204 ~~p~--i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~ 281 (354)
+.+. +.++++..+ .+.+|+|+.+++.|+++++. +++.++++++.+.+. +.++.+++++++|+||+.+++.+
T Consensus 164 ~~~~~~~~~ll~~~d-~~~isl~~~~~~~~~~~~g~----~~~~vl~~i~~l~~~--~~~~~i~~~~v~~~n~~~~ei~~ 236 (295)
T TIGR02494 164 FTPWETIEKVLPYVD-LFLFDIKHLDDERHKEVTGV----DNEPILENLEALAAA--GKNVVIRIPVIPGFNDSEENIEA 236 (295)
T ss_pred CCCHHHHHHHHhhCC-EEEEeeccCChHHHHHHhCC----ChHHHHHHHHHHHhC--CCcEEEEeceeCCcCCCHHHHHH
Confidence 8753 455555444 46799999999999999874 468899999887654 36899999999999999999999
Q ss_pred HHHHhhcCccccceeeeeeeCCCCCCCCc------------ccccchhHHHHHHHHhhCc
Q psy9577 282 LISLMRKNKILTSCKINLIPFNCFPNSNL------------ICSKNSRIKIFAKILMNSG 329 (354)
Q Consensus 282 La~ll~~~~~~~~~~vnLIp~n~~~~~~~------------~~p~~e~l~~f~~~l~~~g 329 (354)
+++|+++++. ....++++||||.+..+| ++|+++++++|++.+++.|
T Consensus 237 l~~~~~~~~~-~v~~v~l~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 237 IAAFLRKLEP-GVDEIDLLPYHRLGENKYRQLGREYPDSEIPDPAEEQLLELKEIFESKG 295 (295)
T ss_pred HHHHHHHhcc-CCceEEecCCCchhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHhcC
Confidence 9999998431 135899999999886555 3599999999999988765
No 29
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.88 E-value=1.3e-22 Score=196.76 Aligned_cols=234 Identities=17% Similarity=0.199 Sum_probs=150.0
Q ss_pred cccccCCceeEEEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhc
Q psy9577 69 DQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREK 147 (354)
Q Consensus 69 ~~~s~dgt~k~l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~ 147 (354)
+..+.||+.|.++... +..||+|.++|.+| ++|+ +|.|||++|+||+++..+..++....+.++++.. ++...
T Consensus 67 e~~~~~~~~~d~~~~~~~~~v~gl~hkY~~r-~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~---~i~~~- 140 (321)
T TIGR03821 67 EFEQHPGYSADPLDEQDANPVPGLLHKYHGR-VLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALE---YIAQH- 140 (321)
T ss_pred HhccCCCcCCCchhhcCCCcCCeeeeecCCE-EEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHH---HHHhc-
Confidence 3456789999999998 89999999999888 6776 7899999999999987665555444444555332 22211
Q ss_pred CcccCCcCceeEEeeeeeccCcccccccc-ccceeeeee---ccccccccceeEEeecccchhch-HhhhhcC-cceeEE
Q psy9577 148 NIKINSQGKRQITNIVMMGMGEPLLNYKS-TIGALKLIL---SDHAYGLSRRHVILSTSGIIPMI-DKLAQEC-PVELAV 221 (354)
Q Consensus 148 ~~~~~~~gg~~i~~Vvf~GmGEPlln~~~-v~~~l~~l~---~~~g~~~~~r~itvsT~G~~p~i-~~l~~~~-~~~Lai 221 (354)
..+++|+||| ||||++.+. +.+++..+. ....++|+.|-..+.|+-+.+.+ +.+.+.. ...+.+
T Consensus 141 ---------~~i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~ 210 (321)
T TIGR03821 141 ---------PEINEVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVV 210 (321)
T ss_pred ---------CCCCEEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEe
Confidence 2578899999 999999775 323332222 21223332222344444333332 2233322 333346
Q ss_pred eeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeee
Q psy9577 222 SLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301 (354)
Q Consensus 222 SL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp 301 (354)
|++++. |.+. +..++++.+.+. |..+.+.+++++|+||+.+++.+|.+++..++. ..+.+..
T Consensus 211 h~dh~~-Ei~d------------~~~~ai~~L~~~--Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv---~pyyl~~ 272 (321)
T TIGR03821 211 HINHAN-EIDA------------EVADALAKLRNA--GITLLNQSVLLRGVNDNADTLAALSERLFDAGV---LPYYLHL 272 (321)
T ss_pred eCCChH-hCcH------------HHHHHHHHHHHc--CCEEEecceeeCCCCCCHHHHHHHHHHHHHcCC---eeCcccc
Confidence 888885 5553 356677766544 479999999999999999999999999987442 2234455
Q ss_pred CCCCCCCCcccccchhHHHHHHHHh----hCceeEEEec
Q psy9577 302 FNCFPNSNLICSKNSRIKIFAKILM----NSGIFVTIRK 336 (354)
Q Consensus 302 ~n~~~~~~~~~p~~e~l~~f~~~l~----~~gi~v~ir~ 336 (354)
+.|.++......+.++..++.+.++ ...++..++.
T Consensus 273 ~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG~~~P~~v~d 311 (321)
T TIGR03821 273 LDKVQGAAHFDVDDERARALMAELLARLPGYLVPRLVRE 311 (321)
T ss_pred cCCCCCcccccCCHHHHHHHHHHHHHhCCCCccceeEEE
Confidence 5666665444455555555555544 3455666665
No 30
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.88 E-value=1.3e-22 Score=194.13 Aligned_cols=205 Identities=18% Similarity=0.296 Sum_probs=154.2
Q ss_pred ceeEEeccccceEeeeeecCCC-Cccc---ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGR-QGFV---RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY 174 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~-~g~~---r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~ 174 (354)
..+.+|.+..||++|.||+..- ..+. ..||++||..-+..+.. + .++.|-++| ||||+.
T Consensus 11 ~~LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~-~--------------Gv~kvRlTG-GEPllR- 73 (322)
T COG2896 11 RYLRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAE-L--------------GVEKVRLTG-GEPLLR- 73 (322)
T ss_pred ceEEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHH-c--------------CcceEEEeC-CCchhh-
Confidence 6788999999999999999865 4442 26899999887765433 1 367899999 999998
Q ss_pred ccccceeeeeeccccccccceeEEeecccch-hc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGII-PM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~-p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+++.+.++.+++. ++ +.++++|||+. +. ..+|.+.+-..+.||||+.|++++++|++.+ .++++++.+++
T Consensus 74 ~dl~eIi~~l~~~-~~----~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~---~~~~Vl~GI~~ 145 (322)
T COG2896 74 KDLDEIIARLARL-GI----RDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRD---RLDRVLEGIDA 145 (322)
T ss_pred cCHHHHHHHHhhc-cc----ceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCC---cHHHHHHHHHH
Confidence 8899999998873 54 48999999974 22 3344444445789999999999999999644 38999999999
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC-cccccchhHHHHHHHHhhCcee
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN-LICSKNSRIKIFAKILMNSGIF 331 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~-~~~p~~e~l~~f~~~l~~~gi~ 331 (354)
..+.+ -.+|++++|+++|+||. ++..|++|+++ .+..+.+|.|+|.+... +..-..-....+.+.+.+.+..
T Consensus 146 A~~~G-l~pVKlN~Vv~kgvNd~--ei~~l~e~~~~----~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~ 218 (322)
T COG2896 146 AVEAG-LTPVKLNTVLMKGVNDD--EIEDLLEFAKE----RGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATL 218 (322)
T ss_pred HHHcC-CCceEEEEEEecCCCHH--HHHHHHHHHhh----cCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhccc
Confidence 88664 45799999999999995 79999999999 66789999999987522 2111223344445555554433
Q ss_pred EEEe
Q psy9577 332 VTIR 335 (354)
Q Consensus 332 v~ir 335 (354)
..++
T Consensus 219 ~~~~ 222 (322)
T COG2896 219 LPVR 222 (322)
T ss_pred cccc
Confidence 3333
No 31
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.87 E-value=3.1e-22 Score=197.85 Aligned_cols=212 Identities=17% Similarity=0.237 Sum_probs=156.1
Q ss_pred CceeEEEeeecCCC--ceeEEeccccceEeeeeecCCCC-cc---cccchhhhhhhheehhhhhhhhhcCcccCCcCcee
Q psy9577 85 KNIIETVFIPEKNR--NTLCISTQVGCAINCIFCSTGRQ-GF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQ 158 (354)
Q Consensus 85 g~~iE~v~i~~~~r--~tlcvSsq~GC~~~C~fC~tg~~-g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~ 158 (354)
.+.|++.+....+| ..+++|.+.+||++|.||+.+.. .. .+.+|.+||.+.+..... ..
T Consensus 42 ~~~~~~~l~D~~gr~~~~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~G 106 (373)
T PLN02951 42 SNPVSDMLVDSFGRRHNYLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVA---------------AG 106 (373)
T ss_pred CCCCCcccccCCCCcccEEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHH---------------CC
Confidence 45677766654444 57999999999999999987531 11 245899999887643221 13
Q ss_pred EEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccch--hchHhhhhcCcceeEEeeccCccccccccee
Q psy9577 159 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVP 236 (354)
Q Consensus 159 i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~--p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p 236 (354)
+..|+|+| ||||+++ .+.++++.+++..|+ .+++|+|||+. +.+.++.+.....+.|||++.+++.++++++
T Consensus 107 v~~I~~tG-GEPllr~-dl~eli~~l~~~~gi----~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr 180 (373)
T PLN02951 107 VDKIRLTG-GEPTLRK-DIEDICLQLSSLKGL----KTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTR 180 (373)
T ss_pred CCEEEEEC-CCCcchh-hHHHHHHHHHhcCCC----ceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhc
Confidence 56799999 9999985 477888888764355 26999999974 2355565554456899999999999999975
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccch
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNS 316 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e 316 (354)
. ..++.++++++.+.+.. ..+|.+++++++|+||+ ++.++++++++ .+..+.+|+|+|+++..+.....-
T Consensus 181 ~---~~~~~vl~~I~~a~~~G-~~~vkin~vv~~g~N~~--Ei~~li~~a~~----~gi~vr~ie~mP~~~~~~~~~~~~ 250 (373)
T PLN02951 181 R---KGHDRVLESIDTAIELG-YNPVKVNCVVMRGFNDD--EICDFVELTRD----KPINVRFIEFMPFDGNVWNVKKLV 250 (373)
T ss_pred C---CCHHHHHHHHHHHHHcC-CCcEEEEEEecCCCCHH--HHHHHHHHHHh----CCCeEEEEEcccCCCCccccccCC
Confidence 3 34699999999887553 24799999999999994 69999999998 567889999999987655433333
Q ss_pred hHHHHHHHHhh
Q psy9577 317 RIKIFAKILMN 327 (354)
Q Consensus 317 ~l~~f~~~l~~ 327 (354)
...++.+.+.+
T Consensus 251 ~~~ei~~~l~~ 261 (373)
T PLN02951 251 PYAEMMDRIEQ 261 (373)
T ss_pred CHHHHHHHHHH
Confidence 34555555543
No 32
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.85 E-value=2.4e-21 Score=183.30 Aligned_cols=203 Identities=19% Similarity=0.211 Sum_probs=156.8
Q ss_pred cceEeeeeecCCCCcc-----cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceee
Q psy9577 108 GCAINCIFCSTGRQGF-----VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182 (354)
Q Consensus 108 GC~~~C~fC~tg~~g~-----~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~ 182 (354)
-|+.+|.||+.|.... ......+.|.+++.....+.+. ++.++++|+|+|-|||++. .++-+.++
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~---------ea~~pd~vtis~~GEPTLy-~~L~elI~ 102 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGD---------EATEPDHVTISLSGEPTLY-PNLGELIE 102 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhccccc---------ccCCCCEEEEeCCCCcccc-cCHHHHHH
Confidence 6999999999975432 2335667777776654443210 1247899999999999995 89999999
Q ss_pred eeecccc-ccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhcc-CCCc
Q psy9577 183 LILSDHA-YGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY-SPRH 260 (354)
Q Consensus 183 ~l~~~~g-~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~-~~~~ 260 (354)
.+++ .| + .+.|-|||..|...+=+. ..+.|.+||+|+|++++++|..+.....++.|++.+..+.+. . .
T Consensus 103 ~~k~-~g~~-----~tflvTNgslpdv~~~L~-~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~--~ 173 (296)
T COG0731 103 EIKK-RGKK-----TTFLVTNGSLPDVLEELK-LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYK--G 173 (296)
T ss_pred HHHh-cCCc-----eEEEEeCCChHHHHHHhc-cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCC--C
Confidence 9997 55 4 788899999876433222 245689999999999999999877778999999999999876 4 3
Q ss_pred eeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-----cccchhHHHHHHHHhhC-ceeE
Q psy9577 261 MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-----CSKNSRIKIFAKILMNS-GIFV 332 (354)
Q Consensus 261 ~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-----~p~~e~l~~f~~~l~~~-gi~v 332 (354)
++.+|++|++|+||++++++++|+|++... +..|++=-|.-.+...|. .|..+++..|.+.|.+. |+.+
T Consensus 174 ~~vir~tlvkg~N~~~e~~~~~a~ll~~~~---Pd~velk~~~rpgas~~~l~~~~~p~~e~~~~f~~~l~~~~~~~~ 248 (296)
T COG0731 174 RTVIRTTLVKGINDDEEELEEYAELLERIN---PDFVELKTYMRPGASRYRLPRSNMPLHEEVLEFAKELGEELGYEI 248 (296)
T ss_pred cEEEEEEEeccccCChHHHHHHHHHHHhcC---CCeEEEecCccCChHhhccCccccchhHHHHHHHHHhhcccCeee
Confidence 789999999999999999999999999843 456665555544555554 67789999999999875 5544
No 33
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.84 E-value=4e-21 Score=190.75 Aligned_cols=193 Identities=16% Similarity=0.150 Sum_probs=145.4
Q ss_pred eeeeecCCCCc-ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccc
Q psy9577 112 NCIFCSTGRQG-FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAY 190 (354)
Q Consensus 112 ~C~fC~tg~~g-~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~ 190 (354)
+|.||.++... .++.+|++|+++++.++..++..+ ...|+|+|.|||+. ++++.++++.+++ .|+
T Consensus 38 ~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~------------~ggVtisGGGepl~-~~~l~eLl~~lk~-~gi 103 (404)
T TIGR03278 38 GCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGR------------DTKVTISGGGDVSC-YPELEELTKGLSD-LGL 103 (404)
T ss_pred CCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCC------------CCEEEEECCccccc-CHHHHHHHHHHHh-CCC
Confidence 44578766433 367899999999999998877532 23699999666665 5999999999997 677
Q ss_pred cccceeEEee-ccc--chh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeee
Q psy9577 191 GLSRRHVILS-TSG--IIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFE 265 (354)
Q Consensus 191 ~~~~r~itvs-T~G--~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ie 265 (354)
+++|. ||| +.+ .++++++.....+.+|+|++|++.|+++++..+ .+.++++++++.+ . ..+.++
T Consensus 104 -----~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~~---a~~ILe~L~~L~e-~--~~v~~~ 172 (404)
T TIGR03278 104 -----PIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDPT---PEASLQCLRRFCE-S--CEVHAA 172 (404)
T ss_pred -----CEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCCC---HHHHHHHHHHHHh-c--CCEEEE
Confidence 78887 996 432 267777763335889999999999999987432 2899999998875 3 479999
Q ss_pred eeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC-----------CcccccchhHHHH-HHHHhhCceeEE
Q psy9577 266 YCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS-----------NLICSKNSRIKIF-AKILMNSGIFVT 333 (354)
Q Consensus 266 yvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~-----------~~~~p~~e~l~~f-~~~l~~~gi~v~ 333 (354)
.+++||+||+++. .++++++++++ ...|.|.|||+.+.. .+.+++.+++.++ .+..++.++.+.
T Consensus 173 ivlIPGiND~eel-~~ti~~L~~lg---~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~~~~~~~i~~~ 248 (404)
T TIGR03278 173 SVIIPGVNDGDVL-WKTCADLESWG---AKALILMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRVT 248 (404)
T ss_pred EEEeCCccCcHHH-HHHHHHHHHCC---CCEEEEEecccccccccccCCcCcccCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 9999999998765 59999999854 357999999976543 1445667777766 555566665543
No 34
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.84 E-value=7.7e-21 Score=182.59 Aligned_cols=177 Identities=21% Similarity=0.321 Sum_probs=136.3
Q ss_pred ceeEEeccccceEeeeeecCCCCcc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQGF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
.+++++.+.+||++|.||+...... .+.++.+||...+..... ..+..|.|+| ||||++. .
T Consensus 10 ~~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~gi~~I~~tG-GEPll~~-~ 72 (302)
T TIGR02668 10 TSLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASE---------------FGVRKVKITG-GEPLLRK-D 72 (302)
T ss_pred CeEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHH---------------cCCCEEEEEC-ccccccc-C
Confidence 4688899999999999999864332 356899998765543221 1356799999 9999985 4
Q ss_pred ccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
+.++++.+++ .|+ .+++|+|||+.. .+.++.+.....+.|||++.+++.|+++++ +.++++++++++.+.
T Consensus 73 l~~iv~~l~~-~g~----~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~~~ 144 (302)
T TIGR02668 73 LIEIIRRIKD-YGI----KDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIESAV 144 (302)
T ss_pred HHHHHHHHHh-CCC----ceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHHHH
Confidence 6788888876 454 379999999753 234444444457899999999999999875 457999999999887
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~ 307 (354)
+.. ..+|.+++++++|.|++ ++.++++++++ ....+++|+|+|.+.
T Consensus 145 ~~G-~~~v~i~~v~~~g~n~~--ei~~~~~~~~~----~g~~~~~ie~~p~~~ 190 (302)
T TIGR02668 145 DAG-LTPVKLNMVVLKGINDN--EIPDMVEFAAE----GGAILQLIELMPPGE 190 (302)
T ss_pred HcC-CCcEEEEEEEeCCCCHH--HHHHHHHHHHh----cCCEEEEEEEeECCC
Confidence 553 23499999999999884 69999999998 556789999999764
No 35
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.82 E-value=5e-20 Score=179.38 Aligned_cols=177 Identities=20% Similarity=0.251 Sum_probs=134.4
Q ss_pred eeEEeccccceEeeeeecCCCCcc---cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
.+-+|.+.+||++|.||+.....+ ...|+.+||...+..... ..+..|+|+| ||||++ +.
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~---------------~Gv~~I~~tG-GEPllr-~d 77 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTE---------------LGVRKIRLTG-GEPLVR-RG 77 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHH---------------CCCCEEEEEC-cCCCcc-cc
Confidence 455678899999999999764332 356899998876543222 1367899999 999998 56
Q ss_pred ccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
+.++++.+++..++ ..++++|||..- .+++|.+.....+.|||++.+++.|+++++ ..++++++++++.+.
T Consensus 78 l~~li~~i~~~~~l----~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~---~g~~~~vl~~i~~~~ 150 (329)
T PRK13361 78 CDQLVARLGKLPGL----EELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTR---NGRLERVIAGIDAAK 150 (329)
T ss_pred HHHHHHHHHhCCCC----ceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcC---CCCHHHHHHHHHHHH
Confidence 77888888763333 268999999742 244455544446899999999999999976 347899999999876
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~ 307 (354)
+.. ..+|.+++++++|.|+ +++.++++|+++ ....+.+|+|.|++.
T Consensus 151 ~~G-i~~v~in~v~~~g~N~--~ei~~~~~~~~~----~gi~~~~ie~mP~g~ 196 (329)
T PRK13361 151 AAG-FERIKLNAVILRGQND--DEVLDLVEFCRE----RGLDIAFIEEMPLGE 196 (329)
T ss_pred HcC-CCceEEEEEEECCCCH--HHHHHHHHHHHh----cCCeEEEEecccCCC
Confidence 542 2279999999999998 579999999998 456677888888875
No 36
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.81 E-value=1e-19 Score=177.29 Aligned_cols=179 Identities=18% Similarity=0.284 Sum_probs=135.7
Q ss_pred eeEEeccccceEeeeeecCCCCc-----ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQG-----FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY 174 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g-----~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~ 174 (354)
.+-++.+.+||++|.||+....+ ..+.+|.+|+...+..... ..+..|.|+| ||||++
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~---------------~gv~~V~ltG-GEPll~- 73 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVG---------------LGVRKVRLTG-GEPLLR- 73 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHH---------------CCCCEEEEEC-cccccc-
Confidence 56677889999999999986422 2456899998876553322 1267899999 999998
Q ss_pred ccccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+.+.++++.+++..|+ ..++|+|||+.- .++.+.+.....+.|||++.+++.++++++. ..++++++++++.
T Consensus 74 ~~l~~li~~i~~~~gi----~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i~~ 147 (334)
T TIGR02666 74 KDLVELVARLAALPGI----EDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGIDA 147 (334)
T ss_pred CCHHHHHHHHHhcCCC----CeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC--CCCHHHHHHHHHH
Confidence 5577888877753454 279999999752 2444554444468999999999999998742 3578999999998
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 308 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~ 308 (354)
+.+.. ..+|.+++++++|+|| +++.++++++++ ....+.+|+|.|++..
T Consensus 148 l~~~G-~~~v~in~vv~~g~n~--~ei~~l~~~~~~----~gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 148 ALAAG-LEPVKLNTVVMRGVND--DEIVDLAEFAKE----RGVTLRFIELMPLGEG 196 (334)
T ss_pred HHHcC-CCcEEEEEEEeCCCCH--HHHHHHHHHHHh----cCCeEEEEeccCCCCC
Confidence 87553 2249999999999999 479999999998 5567888999988654
No 37
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.79 E-value=2.3e-19 Score=160.98 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=122.7
Q ss_pred CceeEEeccccceEeeeeecCCCCcc---cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQGF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY 174 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~ 174 (354)
+.+..+..+.|||++|.||+.+.... ...+++++|++.+.... ..+..|.|+| ||||+++
T Consensus 15 g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~----------------~~~~~i~~sG-GEPll~~ 77 (191)
T TIGR02495 15 GKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSRQ----------------GLIDGVVITG-GEPTLQA 77 (191)
T ss_pred CCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHhc----------------CCCCeEEEEC-CcccCcH
Confidence 44455556689999999999863221 34689999998876421 1256789999 9999997
Q ss_pred ccccceeeeeeccccccccceeEEeecccchhc-hHhhhhcC-cceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQEC-PVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+ +.++++.+++ .|+ ++.+.|||..+. ++++++.. ...+.+|+++. ++.+..+++..+.+. ++++++++.
T Consensus 78 ~-l~~li~~~~~-~g~-----~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g~~~~~~-~~~~~~i~~ 148 (191)
T TIGR02495 78 G-LPDFLRKVRE-LGF-----EVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYGLEKNGS-NNILKSLEI 148 (191)
T ss_pred h-HHHHHHHHHH-CCC-----eEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHCCCCchH-HHHHHHHHH
Confidence 6 8899999987 576 799999998654 55555543 24688999995 567888876433322 488888887
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhc
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRK 288 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~ 288 (354)
+.+ . +.++.++++++||.|+ ++++.++++++++
T Consensus 149 l~~-~-gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~ 181 (191)
T TIGR02495 149 LLR-S-GIPFELRTTVHRGFLD-EEDLAEIATRIKE 181 (191)
T ss_pred HHH-c-CCCEEEEEEEeCCCCC-HHHHHHHHHHhcc
Confidence 654 3 4689999999999999 7899999999988
No 38
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.73 E-value=4.1e-17 Score=153.75 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=145.5
Q ss_pred ceeEEeccccceEeeeeecCCCCccccc------chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQGFVRN------LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~g~~r~------lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll 172 (354)
+.+=|--..|||++|.||......+.|. ..++.+++-+.++.++-+ +| -...+-|+|||++
T Consensus 107 NviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~Kg----------kg---lEaHlDGqGEP~l 173 (414)
T COG2100 107 NVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKG----------KG---LEAHLDGQGEPLL 173 (414)
T ss_pred eEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhC----------CC---eEEEecCCCCCcc
Confidence 3333334479999999999865554332 356777777766555421 11 2578889999999
Q ss_pred ccccccceeeeeeccccccccceeEEeecccchh---chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHH
Q psy9577 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP---MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILA 249 (354)
Q Consensus 173 n~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p---~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~ 249 (354)
. +++.++++.+++..|.. .+++.|||..- .+++|.+.+-+.+++|+||.||++-+.+++. +.|+++.+++.
T Consensus 174 Y-P~l~~lVqalk~~~~v~----vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~ 247 (414)
T COG2100 174 Y-PHLVDLVQALKEHKGVE----VVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEV 247 (414)
T ss_pred c-hhHHHHHHHHhcCCCce----EEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCc-cccCHHHHHHH
Confidence 5 88888888888877764 69999999752 2566666655689999999999999999985 67999999999
Q ss_pred HhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCc--ccc--ceeeeeeeCCCCCCCCcccccchhHHHHHHHH
Q psy9577 250 CHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK--ILT--SCKINLIPFNCFPNSNLICSKNSRIKIFAKIL 325 (354)
Q Consensus 250 l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~--~~~--~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l 325 (354)
++.+.. + +..|.|.-+++||+||. ++.++.+|+.+.| +.. ....+.+||.- +..+. --..-...+|...|
T Consensus 248 aE~i~~-a-~idvlIaPv~lPG~ND~--E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~-GRkp~-~~k~~~fkeFYrwL 321 (414)
T COG2100 248 AEYIAN-A-GIDVLIAPVWLPGVNDD--EMPKIIEWAREIGAGKKWPPLGIQKYIPYKF-GRKPV-IAKVWPFKEFYRWL 321 (414)
T ss_pred HHHHHh-C-CCCEEEeeeecCCcChH--HHHHHHHHHHHhCCCCCCCCcceEEeeeecc-cCCcc-ccccCcHHHHHHHH
Confidence 987775 5 47999999999999995 7899999998753 111 24567777742 22111 11222356666666
Q ss_pred hh
Q psy9577 326 MN 327 (354)
Q Consensus 326 ~~ 327 (354)
++
T Consensus 322 re 323 (414)
T COG2100 322 RE 323 (414)
T ss_pred HH
Confidence 43
No 39
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.66 E-value=4e-16 Score=154.55 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=133.9
Q ss_pred ceeEEeccccceEeeeeecCCCC--cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ--GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~--g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
..+.+..+.+||++|.||+.... ...+.++.+++.+.+..+.. ..+..|+|+| ||||++++
T Consensus 16 ~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~---------------~g~~~v~~~G-GEPll~~~- 78 (378)
T PRK05301 16 LWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARA---------------LGALQLHFSG-GEPLLRKD- 78 (378)
T ss_pred eEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHH---------------cCCcEEEEEC-CccCCchh-
Confidence 45667777899999999987532 22467888887765543322 1245799999 99999855
Q ss_pred ccceeeeeeccccccccceeEEeecccch--h-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGII--P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~--p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~ 253 (354)
+.++++.+++ .|+ ++++.|||.. + .++.|.+.....+.|||++.+++.|+++.+. ..+++.++++++.+
T Consensus 79 ~~~il~~~~~-~g~-----~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~--~g~f~~~~~~i~~l 150 (378)
T PRK05301 79 LEELVAHARE-LGL-----YTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGT--KGAFAKKLAVARLV 150 (378)
T ss_pred HHHHHHHHHH-cCC-----cEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCC--CchHHHHHHHHHHH
Confidence 7788988886 576 7889999964 2 2455555444468999999999999998653 23688999999876
Q ss_pred hccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC----CcccccchhHHHHHHHH
Q psy9577 254 ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS----NLICSKNSRIKIFAKIL 325 (354)
Q Consensus 254 ~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~----~~~~p~~e~l~~f~~~l 325 (354)
.+. +.+|.+.+++.+ .+.+++.++++++.+++. ..+.+.++.+.+.. ....|+.+++.++.+.+
T Consensus 151 ~~~--g~~v~i~~vv~~---~N~~~i~~~~~~~~~lgv---~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 218 (378)
T PRK05301 151 KAH--GYPLTLNAVIHR---HNIDQIPRIIELAVELGA---DRLELANTQYYGWALLNRAALMPTREQLERAERIV 218 (378)
T ss_pred HHC--CCceEEEEEeec---CCHHHHHHHHHHHHHcCC---CEEEEecccccChhhhcccccCCCHHHHHHHHHHH
Confidence 543 368999988753 355789999999988652 23444444433211 12345666666655443
No 40
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.66 E-value=2.5e-16 Score=140.54 Aligned_cols=190 Identities=13% Similarity=0.224 Sum_probs=135.9
Q ss_pred eeEEeccccceEeeeeecCCCCc-ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccc-cc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQG-FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK-ST 177 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g-~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~-~v 177 (354)
++++..+.||+++|.||..+... -.+.++++++.+++......... .+ .+..+.|.| |||+++.+ .+
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~---------~~-~~~~i~~~g-g~~~~~~~~~~ 70 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEK---------EI-LVGTVFIGG-GTPTLLSPEQL 70 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccC---------Cc-ceeEEEECC-CCCCCCCHHHH
Confidence 45677789999999999986431 14667889998888765322110 11 356677766 99999865 37
Q ss_pred cceeeeeeccccccccceeEEeecccch--h-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhh
Q psy9577 178 IGALKLILSDHAYGLSRRHVILSTSGII--P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 178 ~~~l~~l~~~~g~~~~~r~itvsT~G~~--p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
.+.++.+++..+.+ ....++++|||.. + .++.|.+.....+.+|+++.+++.++.+. +..+.++++++++.+.
T Consensus 71 ~~~~~~~~~~~~~~-~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~---~~~~~~~~~~~i~~~~ 146 (216)
T smart00729 71 EELLEAIREILGLA-DDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAIN---RGHTVEDVLEAVEKLR 146 (216)
T ss_pred HHHHHHHHHhCCCC-CCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 77777777633211 1226888998642 2 25556655444799999999999998854 3567899999999876
Q ss_pred ccCCCceeeeeeeeccCCC-CchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc
Q psy9577 255 TYSPRHMITFEYCMLHGIN-DTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL 310 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvN-Ds~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~ 310 (354)
+. +. +.+.+.+++|++ ++.+++.++++++.+.+ ...+.+.||+|.++.++
T Consensus 147 ~~--g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~p~~~t~~ 197 (216)
T smart00729 147 EA--GP-IKVSTDLIVGLPGETEEDFEETLKLLKELG---PDRVSIFPLSPRPGTPL 197 (216)
T ss_pred Hh--CC-cceEEeEEecCCCCCHHHHHHHHHHHHHcC---CCeEEeeeeeeCCCChH
Confidence 54 22 778888899987 88999999999998833 24588899999887654
No 41
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.64 E-value=8.5e-16 Score=151.02 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=131.5
Q ss_pred ceeEEeccccceEeeeeecCCCC--cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ--GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~--g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
..+.+..+.+||++|.||..... .....|+.+++.+.+..+.. ..+..|+|+| ||||++. .
T Consensus 7 ~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~---------------~g~~~v~~~G-GEPll~~-~ 69 (358)
T TIGR02109 7 LWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAE---------------LGVLQLHFSG-GEPLARP-D 69 (358)
T ss_pred cEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHh---------------cCCcEEEEeC-ccccccc-c
Confidence 45667778899999999987532 12456888877665543222 1245699999 9999985 5
Q ss_pred ccceeeeeeccccccccceeEEeecccch--h-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGII--P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~--p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~ 253 (354)
+.+.++.+++ .|+ ++.+.|||+. + .+++|.+.....+.|||++++++.|+++.+. ...++.++++++.+
T Consensus 70 ~~~ii~~~~~-~g~-----~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~--~g~f~~v~~~i~~l 141 (358)
T TIGR02109 70 LVELVAHARR-LGL-----YTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGY--KNAFEQKLAMARAV 141 (358)
T ss_pred HHHHHHHHHH-cCC-----eEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCC--ccHHHHHHHHHHHH
Confidence 7788888886 576 7899999964 2 2555555433468999999999999998653 23578999999877
Q ss_pred hccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC--CcccccchhHHHHHHH
Q psy9577 254 ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS--NLICSKNSRIKIFAKI 324 (354)
Q Consensus 254 ~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~--~~~~p~~e~l~~f~~~ 324 (354)
.+. +.++.+.+++. +++.+++.++++++.+++. ....++.+++...... ....|+.++++++.+.
T Consensus 142 ~~~--g~~v~v~~vv~---~~N~~~l~~~~~~~~~lg~-~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 208 (358)
T TIGR02109 142 KAA--GLPLTLNFVIH---RHNIDQIPEIIELAIELGA-DRVELATTQYYGWALLNRAALMPTRAQLEEATRI 208 (358)
T ss_pred HhC--CCceEEEEEec---cCCHHHHHHHHHHHHHcCC-CEEEEEeeeccCchhcchhhcCCCHHHHHHHHHH
Confidence 643 36889998876 3456789999999998652 1123333444332211 1234555555554444
No 42
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.63 E-value=1.8e-15 Score=146.75 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=124.7
Q ss_pred eeEEeccccceEeeeeecCCCCc---ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQG---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g---~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
++-+..+.+||++|.||...... ..+.|+.+|+++.+.. . .+..|+|.| ||||+++ .
T Consensus 29 ~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~e-------~-----------g~~~V~i~G-GEPLL~p-d 88 (318)
T TIGR03470 29 VLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVDE-------C-----------GAPVVSIPG-GEPLLHP-E 88 (318)
T ss_pred EEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHHH-------c-----------CCCEEEEeC-ccccccc-c
Confidence 44455678999999999875322 2356899988765431 1 134689999 9999995 5
Q ss_pred ccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
+.++++.+++ .|+ ++.+.|||+.. .+.++.+.....+.|||+++. +.|+++.. +...++.++++++.+.
T Consensus 89 l~eiv~~~~~-~g~-----~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~-e~hd~~~~--~~g~f~~~l~~I~~l~ 159 (318)
T TIGR03470 89 IDEIVRGLVA-RKK-----FVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR-EHHDASVC--REGVFDRAVEAIREAK 159 (318)
T ss_pred HHHHHHHHHH-cCC-----eEEEecCceehHHHHHHHHhCCCcEEEEEEecCc-hhhchhhc--CCCcHHHHHHHHHHHH
Confidence 7899998876 565 79999999753 244444433456899999974 78887753 3457899999999886
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCC
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP 306 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~ 306 (354)
+. +.+|.+.++++++. +.+++.+++++++++|. ..+.+.|..+++
T Consensus 160 ~~--G~~v~v~~tv~~~~--n~~ei~~~~~~~~~lGv---~~i~i~p~~~~~ 204 (318)
T TIGR03470 160 AR--GFRVTTNTTLFNDT--DPEEVAEFFDYLTDLGV---DGMTISPGYAYE 204 (318)
T ss_pred HC--CCcEEEEEEEeCCC--CHHHHHHHHHHHHHcCC---CEEEEecCcccc
Confidence 54 36899999988764 55789999999998551 257777877654
No 43
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.58 E-value=2.5e-14 Score=139.43 Aligned_cols=204 Identities=18% Similarity=0.181 Sum_probs=117.0
Q ss_pred ceeEEeccccceEeeeeecCCCCcccccch-hhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccc-c
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQGFVRNLT-VGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK-S 176 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt-~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~-~ 176 (354)
..+.+..+.|||++|+||.+.......... .+++.+ +..++... ..+..|+|+| ||||+..+ .
T Consensus 113 ~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~----~i~~i~~~----------~~i~eV~lsG-GDPLl~~d~~ 177 (331)
T TIGR00238 113 NRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQK----ALDYIAEH----------PEIIEILISG-GDPLMAKDHE 177 (331)
T ss_pred CcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHH----HHHHHHhC----------CCcCEEEEEC-CccccCCHHH
Confidence 445566778999999999985322212221 233322 22333221 2477899999 99999755 3
Q ss_pred ccceeeeeeccccccccceeEEeecccchhc-----hHhhhhcCcceeEEeeccCc-ccccccceeCCCcCchHHHHHHH
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGIIPM-----IDKLAQECPVELAVSLHASN-NNLRNKLVPISKKYPLKELILAC 250 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-----i~~l~~~~~~~LaiSL~a~~-~e~r~~l~p~~~~~~l~~il~~l 250 (354)
+.+.++.+++..++. .-++...|+|..|. +.++++.....+.+..|.-. +| ++ +++.+++
T Consensus 178 L~~ll~~L~~i~~~~--~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~E----i~--------~~~~~ai 243 (331)
T TIGR00238 178 LEWLLKRLEEIPHLV--RLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNE----IT--------EEFAEAM 243 (331)
T ss_pred HHHHHHHHHhcCCcc--EEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHh----CC--------HHHHHHH
Confidence 666666665421110 01444445565442 22333332222333333222 22 21 5677888
Q ss_pred hhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhh---
Q psy9577 251 HRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN--- 327 (354)
Q Consensus 251 ~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~--- 327 (354)
+.+.+. |..+.+++||++|+||+.+++.+|.+.+..+++ ..+.+..+.+.++...-..+.++..++.+.+++
T Consensus 244 ~~L~~a--Gi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV---~pyyl~~~~~~~g~~~f~~~~~~~~~i~~~l~~~~s 318 (331)
T TIGR00238 244 KKLRTV--NVTLLNQSVLLRGVNDRAQILAKLSIALFKVGI---IPYYLHYLDKVQGAKHFLVPDAEAAQIVKELARLTS 318 (331)
T ss_pred HHHHHc--CCEEEeecceECCcCCCHHHHHHHHHHHhhcCe---ecCeecCcCCCCCcccccCCHHHHHHHHHHHHhcCC
Confidence 776544 479999999999999999999999999887442 233445566666654444555555555555543
Q ss_pred -CceeEEEec
Q psy9577 328 -SGIFVTIRK 336 (354)
Q Consensus 328 -~gi~v~ir~ 336 (354)
..++..++.
T Consensus 319 G~~~P~~v~~ 328 (331)
T TIGR00238 319 GYLVPKFAVE 328 (331)
T ss_pred CCcceeEEec
Confidence 334555543
No 44
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.56 E-value=4.3e-15 Score=127.30 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=110.7
Q ss_pred eccccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccce
Q psy9577 104 STQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
.++.||+++|.||..+.. ...+.++++++.+.+....... .+..|.++| |||+++++....+
T Consensus 2 ~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~--------------~~~~i~~~~-gep~~~~~~~~~~ 66 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDK--------------GVKEIFFGG-GEPTLHPDFIELL 66 (166)
T ss_dssp EEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHT--------------THEEEEEES-STGGGSCHHHHHH
T ss_pred EECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhc--------------CCcEEEEee-cCCCcchhHHHHH
Confidence 456899999999999863 3467889999999987653111 134566655 9999996654444
Q ss_pred eeeeecc-ccccccceeEEeecccchhc---hHhhhhcCcceeEEeeccCccc-ccccceeCCCcCchHHHHHHHhhhhc
Q psy9577 181 LKLILSD-HAYGLSRRHVILSTSGIIPM---IDKLAQECPVELAVSLHASNNN-LRNKLVPISKKYPLKELILACHRYIT 255 (354)
Q Consensus 181 l~~l~~~-~g~~~~~r~itvsT~G~~p~---i~~l~~~~~~~LaiSL~a~~~e-~r~~l~p~~~~~~l~~il~~l~~~~~ 255 (354)
....+.. .++ ++++.|+|..+. ++.+.+.....+.+++++.+++ .++.+. +..+.++++++++.+.+
T Consensus 67 ~~~~~~~~~~~-----~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 67 ELLRKIKKRGI-----RISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIIN---RGKSFERVLEALERLKE 138 (166)
T ss_dssp HHHHHCTCTTE-----EEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS---STSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc-----ceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhc---CCCCHHHHHHHHHHHHH
Confidence 4433321 344 899999998752 5555555546799999999999 555542 45688999999998876
Q ss_pred cCCCceeeeeeeeccCCCCchHHHHHHHHHh
Q psy9577 256 YSPRHMITFEYCMLHGINDTDIHAIELISLM 286 (354)
Q Consensus 256 ~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll 286 (354)
.. ...+...++++||.|+ +++.++++|+
T Consensus 139 ~g-~~~~~~~i~~~~~~~~--~e~~~~~~~i 166 (166)
T PF04055_consen 139 AG-IPRVIIFIVGLPGEND--EEIEETIRFI 166 (166)
T ss_dssp TT-SETEEEEEEEBTTTSH--HHHHHHHHHH
T ss_pred cC-CCcEEEEEEEeCCCCH--HHHHHHhCcC
Confidence 53 2238889999999887 5788888875
No 45
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.55 E-value=3.7e-14 Score=137.75 Aligned_cols=192 Identities=19% Similarity=0.251 Sum_probs=125.1
Q ss_pred eeEEeccccceEeeeeecCCCC-cc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc-cc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQ-GF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN-YK 175 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~-g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln-~~ 175 (354)
.+-+..+.+||++|+||.+... +- .+.++.+|+.+.+. ++... ..+..|+|+| ||||+. .+
T Consensus 89 rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~----~i~~~----------~~I~~VilSG-GDPl~~~~~ 153 (321)
T TIGR03822 89 RVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFA----YIADH----------PEIWEVILTG-GDPLVLSPR 153 (321)
T ss_pred EEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHH----HHHhC----------CCccEEEEeC-CCcccCCHH
Confidence 3334456899999999998642 21 23455565554433 33221 2477899999 999985 35
Q ss_pred cccceeeeeeccccccccceeEEeecccc-------hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHH
Q psy9577 176 STIGALKLILSDHAYGLSRRHVILSTSGI-------IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELI 247 (354)
Q Consensus 176 ~v~~~l~~l~~~~g~~~~~r~itvsT~G~-------~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il 247 (354)
.+.++++.+++...+ ..+.+.|.+. .+. ++.|.+. ...+.|++|+.+++ ++ .++++
T Consensus 154 ~L~~ll~~l~~i~~v----~~iri~Tr~~v~~p~rit~ell~~L~~~-g~~v~i~l~~~h~~---el--------~~~~~ 217 (321)
T TIGR03822 154 RLGDIMARLAAIDHV----KIVRFHTRVPVADPARVTPALIAALKTS-GKTVYVALHANHAR---EL--------TAEAR 217 (321)
T ss_pred HHHHHHHHHHhCCCc----cEEEEeCCCcccChhhcCHHHHHHHHHc-CCcEEEEecCCChh---hc--------CHHHH
Confidence 677788777752212 2467777442 122 2223332 34577999997653 22 26788
Q ss_pred HHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhh
Q psy9577 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 327 (354)
Q Consensus 248 ~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~ 327 (354)
++++.+.+. |..+..+++|++|+||+.+++.+|.+++..+++ ..+.+-.+.|.++......+.++..++.+.++.
T Consensus 218 ~ai~~L~~~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv---~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~ 292 (321)
T TIGR03822 218 AACARLIDA--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRI---KPYYLHHLDLAPGTAHFRVTIEEGQALVRALRG 292 (321)
T ss_pred HHHHHHHHc--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCC---eeEEEEecCCCCCcccccCcHHHHHHHHHHHHH
Confidence 888877654 468999999999999999999999999988542 234455667776655445666666666666654
No 46
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.52 E-value=3.4e-14 Score=124.92 Aligned_cols=178 Identities=19% Similarity=0.276 Sum_probs=123.1
Q ss_pred ccccceEeeeeecCCCCcccccchhh---hhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccccccee
Q psy9577 105 TQVGCAINCIFCSTGRQGFVRNLTVG---EIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~g~~r~lt~~---EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l 181 (354)
+..||+++|.||..+........... ++.+.+..... ..+..+.|+| |||+.+. .+.+++
T Consensus 3 ~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~~~g-gep~~~~-~~~~~i 65 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKE---------------RGVEVVILTG-GEPLLYP-ELAELL 65 (204)
T ss_pred cCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHh---------------cCceEEEEeC-CcCCccH-hHHHHH
Confidence 45799999999999765433322222 23222221111 1345677766 9999996 888888
Q ss_pred eeeecc-ccccccceeEEeecccch--h-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 182 KLILSD-HAYGLSRRHVILSTSGII--P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 182 ~~l~~~-~g~~~~~r~itvsT~G~~--p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
+.+++. .++ ++++.|+|.. + .++++.+.....+.+|+++.+++.++.+. .+..++++++++++.+.+.
T Consensus 66 ~~~~~~~~~~-----~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~- 137 (204)
T cd01335 66 RRLKKELPGF-----EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKELREA- 137 (204)
T ss_pred HHHHhhCCCc-----eEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHHHHHc-
Confidence 888863 144 8999999976 3 35666665445789999999999999886 3456899999999988754
Q ss_pred CCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc
Q psy9577 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~ 311 (354)
+..+.+.+++..+.++ .++..+..+++.... ....+++.+|+|.++.++.
T Consensus 138 -~~~~~~~~i~g~~~~~-~~~~~~~~~~l~~~~--~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 138 -GLGLSTTLLVGLGDED-EEDDLEELELLAEFR--SPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred -CCCceEEEEEecCCCh-hHHHHHHHHHHHhhc--CcchhhhhhhcccCCCeee
Confidence 3578888887777776 345555566665521 1356888899999887655
No 47
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.46 E-value=3.7e-13 Score=125.49 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=88.9
Q ss_pred ccceEeeeeecCCCC---cc---cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccce
Q psy9577 107 VGCAINCIFCSTGRQ---GF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~---g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
.|||++|.||.+... +. .+.++.+|+++.+..... ..+..|+|+| ||||++ +.+.++
T Consensus 30 ~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~---------------~~~~~V~lTG-GEPll~-~~l~~l 92 (238)
T TIGR03365 30 GGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGG---------------GTPLHVSLSG-GNPALQ-KPLGEL 92 (238)
T ss_pred CCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhC---------------CCCCeEEEeC-Cchhhh-HhHHHH
Confidence 699999999998642 11 124899999988764311 1256799999 999998 689999
Q ss_pred eeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCc
Q psy9577 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRH 260 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~ 260 (354)
++.+++ .|+ +++|+|||..+. +.++..+ .+++|+|++++... ..++...++++.+.+ +.
T Consensus 93 i~~l~~-~g~-----~v~leTNGtl~~--~~l~~~d-~v~vs~K~~~sg~~---------~~~~~~~~~ik~l~~---~~ 151 (238)
T TIGR03365 93 IDLGKA-KGY-----RFALETQGSVWQ--DWFRDLD-DLTLSPKPPSSGME---------TDWQALDDCIERLDD---GP 151 (238)
T ss_pred HHHHHH-CCC-----CEEEECCCCCcH--HHHhhCC-EEEEeCCCCCCCCC---------CcHHHHHHHHHHhhh---cC
Confidence 999987 687 899999998653 2333444 58899999886321 124566666665543 24
Q ss_pred eeeeeeeec
Q psy9577 261 MITFEYCML 269 (354)
Q Consensus 261 ~v~ieyvlI 269 (354)
++.+.+|+.
T Consensus 152 ~~~vK~Vv~ 160 (238)
T TIGR03365 152 QTSLKVVVF 160 (238)
T ss_pred ceEEEEEEC
Confidence 788888866
No 48
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.44 E-value=1.1e-12 Score=130.54 Aligned_cols=192 Identities=16% Similarity=0.200 Sum_probs=114.6
Q ss_pred ceeEEeccccceEeeeeecCCCC-cc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ-GF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~-g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
..+-+..+.+|++.|+||..... +. ...++.+|+.+-+ .++.+. ..+..|.|+| ||||+..+.
T Consensus 108 ~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i----~yI~~~----------p~I~~VlLSG-GDPLll~d~ 172 (417)
T TIGR03820 108 DRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGI----EYIRNT----------PQIRDVLLSG-GDPLLLSDD 172 (417)
T ss_pred CEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHH----HHHHhc----------CCCCEEEEeC-CccccCChH
Confidence 44455567899999999987532 11 2445666655433 333321 3578899999 999987663
Q ss_pred c-cceeeeeeccccccccceeEEeeccc--chh-----chHhhhhc-CcceeEEeeccCcccccccceeCCCcCchHHHH
Q psy9577 177 T-IGALKLILSDHAYGLSRRHVILSTSG--IIP-----MIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKELI 247 (354)
Q Consensus 177 v-~~~l~~l~~~~g~~~~~r~itvsT~G--~~p-----~i~~l~~~-~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il 247 (354)
. ..+++.+++..++ +.|.+-|.- +.| .+-++++. ..+.+.++++++. | ++ ++..
T Consensus 173 ~L~~iL~~L~~IphV----~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~-E----it--------~~a~ 235 (417)
T TIGR03820 173 YLDWILTELRAIPHV----EVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPR-E----IT--------ASSK 235 (417)
T ss_pred HHHHHHHHHhhcCCC----ceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChH-h----Ch--------HHHH
Confidence 3 3445666653333 246676762 112 22222222 2455667777763 2 32 5788
Q ss_pred HHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhh
Q psy9577 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 327 (354)
Q Consensus 248 ~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~ 327 (354)
++++.+.+. |..+....||++||||+.+-+.+|.+-+-..++ .| +.|-...+..|...-..+.++..++.+.|+.
T Consensus 236 ~Al~~L~~a--GI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV-~P--YYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~ 310 (417)
T TIGR03820 236 KALAKLADA--GIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRV-RP--YYLYQCDLSEGLSHFRTPVGKGIEIIESLIG 310 (417)
T ss_pred HHHHHHHHc--CCEEEeeceEECCcCCCHHHHHHHHHHHHHCCC-ee--ceeeeccCCCCcccccCcHHHHHHHHHHHHH
Confidence 889888755 479999999999999998877777665554331 11 1122234445544444455555556666654
No 49
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.44 E-value=4.6e-13 Score=132.20 Aligned_cols=160 Identities=14% Similarity=0.192 Sum_probs=104.3
Q ss_pred cccceEeeeeecCCCCccc------ccchhhhhhhheeh-hhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc-ccc
Q psy9577 106 QVGCAINCIFCSTGRQGFV------RNLTVGEIIGQLWV-TEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY-KST 177 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g~~------r~lt~~EIv~qv~~-~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~-~~v 177 (354)
+.+||++|.||+.+..... ..++. |.++.+.. +.... .....|+|+| ||||+++ +.+
T Consensus 12 t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~-~~~~~~i~~~~~~~-------------~~~~~i~~~G-GEPll~~~~~~ 76 (370)
T PRK13758 12 SSGCNLKCTYCFYHSLSDNRNVKSYGIMRD-EVLESMVKRVLNEA-------------EGHCSFAFQG-GEPTLAGLEFF 76 (370)
T ss_pred CCCcCCCCcccCCcCccccccccccCCCCH-HHHHHHHHHHHhcc-------------CCceEEEEEC-CccccCChHHH
Confidence 4699999999998643221 12443 34443332 11111 1234799999 9999985 566
Q ss_pred cceeeeeecccc---ccccceeEEeecccch--hchHhhhhcCcceeEEeeccCcccccccceeC-CCcCchHHHHHHHh
Q psy9577 178 IGALKLILSDHA---YGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVPI-SKKYPLKELILACH 251 (354)
Q Consensus 178 ~~~l~~l~~~~g---~~~~~r~itvsT~G~~--p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~-~~~~~l~~il~~l~ 251 (354)
.++++.+++ .| +++ .++|.|||+. +.+.+.+.+..+.+.|||+++ ++.|+++-+. +...+++.++++++
T Consensus 77 ~~~~~~~~~-~~~~~~~~---~~~i~TNG~ll~~~~~~~l~~~~~~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~ 151 (370)
T PRK13758 77 EELMELQRK-HNYKNLKI---YNSLQTNGTLIDESWAKFLSENKFLVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAE 151 (370)
T ss_pred HHHHHHHHH-hccCCCeE---EEEEEecCEecCHHHHHHHHHcCceEEEeecCC-HHHhccccCCCCCCccHHHHHHHHH
Confidence 677777765 33 211 4689999965 333333333334789999998 4677766432 23467899999999
Q ss_pred hhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCc
Q psy9577 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK 290 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~ 290 (354)
.+.+. +.++.+.+++-+. +.+++.++++++.+++
T Consensus 152 ~l~~~--~~~~~i~~~v~~~---n~~~l~~i~~~~~~~g 185 (370)
T PRK13758 152 LFKKY--KVEFNILCVVTSN---TARHVNKIYKYFKEKD 185 (370)
T ss_pred HHHHh--CCCceEEEEeccc---cccCHHHHHHHHHHcC
Confidence 88754 3578888887753 4567889999998854
No 50
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=125.82 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=123.7
Q ss_pred CceeEEeccccceEeeeeecCCCCcc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQGF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
...+-++.+..||++|.||....... ...++++|....+.....+ +. +..|.|.| ||||++ +.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~-------------g~-~~~v~~~g-GEPll~-~d 81 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAEL-------------GE-IPVVIFTG-GEPLLR-PD 81 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHc-------------CC-eeEEEEeC-CCcccc-cc
Confidence 34455567789999999997765443 5677888887443332221 12 45567766 999999 88
Q ss_pred ccceeeeeeccccccccceeEEeecccch--hc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSGII--PM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G~~--p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~ 253 (354)
+.+.++..++..++ +++++|||.. .. ++++.+.....+.||+++.+++.|..+.+. +..++..+++++.+
T Consensus 82 ~~ei~~~~~~~~~~-----~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~--~g~~~~~~~~i~~~ 154 (347)
T COG0535 82 LLEIVEYARKKGGI-----RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGV--KGVFKRAVEAIKNL 154 (347)
T ss_pred HHHHHHHHhhcCCe-----EEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCC--CcHHHHHHHHHHHH
Confidence 99999998864466 8999999933 22 444555444568999999999999988763 45678999999887
Q ss_pred hccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC
Q psy9577 254 ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307 (354)
Q Consensus 254 ~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~ 307 (354)
.+. +..+. ..+.+.+.|+ +++.++++++..++. ..+++.++.+.+.
T Consensus 155 ~~~--g~~~~-~~~~v~~~n~--~~l~~~~~~~~~~g~---~~~~~~~~~~~g~ 200 (347)
T COG0535 155 KEA--GILVV-INTTVTKINY--DELPEIADLAAELGV---DELNVFPLIPVGR 200 (347)
T ss_pred HHc--CCeee-EEEEEecCcH--HHHHHHHHHHHHcCC---CEEEEEEEeeccc
Confidence 643 33444 4445666666 578889999888542 4455566666543
No 51
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.40 E-value=1e-12 Score=130.07 Aligned_cols=211 Identities=13% Similarity=0.030 Sum_probs=146.7
Q ss_pred eccccceEeeeeecCCCC-c-ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc--cccccc
Q psy9577 104 STQVGCAINCIFCSTGRQ-G-FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN--YKSTIG 179 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~-g-~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln--~~~v~~ 179 (354)
+.+.+|+.+|.||+-... + -.+.++++||++++..+.. ..++.|.++| |||..+ .+.+.+
T Consensus 79 n~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~---------------~Gv~~i~lvg-Ge~p~~~~~e~l~~ 142 (371)
T PRK09240 79 YLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKK---------------LGFEHILLLT-GEHEAKVGVDYIRR 142 (371)
T ss_pred EEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHh---------------CCCCEEEEee-CCCCCCCCHHHHHH
Confidence 346899999999986432 1 1356899999998775432 1367899999 997764 578888
Q ss_pred eeeeeeccccccccceeEEeecccchh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCC
Q psy9577 180 ALKLILSDHAYGLSRRHVILSTSGIIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258 (354)
Q Consensus 180 ~l~~l~~~~g~~~~~r~itvsT~G~~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~ 258 (354)
+++.+++. + .+++++++.+.. .+++|.+.+...+.+++.+.+++.+.+++|..++.++++.+++++...+.
T Consensus 143 ~i~~Ik~~--~----p~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a-- 214 (371)
T PRK09240 143 ALPIAREY--F----SSVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA-- 214 (371)
T ss_pred HHHHHHHh--C----CCceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--
Confidence 88888752 2 146666654433 35566666555799999999999999999866778899999999987643
Q ss_pred CceeeeeeeeccCCCCchHHHHHHHHHhhcCcccc---ceeeeeeeCCCCCCCCcc---cccchhHHHHHHHHhhCceeE
Q psy9577 259 RHMITFEYCMLHGINDTDIHAIELISLMRKNKILT---SCKINLIPFNCFPNSNLI---CSKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 259 ~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~---~~~vnLIp~n~~~~~~~~---~p~~e~l~~f~~~l~~~gi~v 332 (354)
|.+ .+...+|-|++++.+|+..++.-++.++... +..|.+..++|.++ ++. +.+++++.+....++-.--.+
T Consensus 215 G~~-~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~lP~~ 292 (371)
T PRK09240 215 GIR-KIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLPDV 292 (371)
T ss_pred CCC-eeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHCccc
Confidence 222 5889999999999999999988766632101 12455666788877 553 355666666666555333344
Q ss_pred EEeccccc
Q psy9577 333 TIRKIRGN 340 (354)
Q Consensus 333 ~ir~~~G~ 340 (354)
.||-+-|+
T Consensus 293 ~i~~s~g~ 300 (371)
T PRK09240 293 EISLSTRE 300 (371)
T ss_pred ccEEecCC
Confidence 55555554
No 52
>PRK07094 biotin synthase; Provisional
Probab=99.39 E-value=1.5e-12 Score=126.37 Aligned_cols=192 Identities=17% Similarity=0.162 Sum_probs=133.3
Q ss_pred eccccceEeeeeecCCCCc--ccc-cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-cccccccccc
Q psy9577 104 STQVGCAINCIFCSTGRQG--FVR-NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLNYKSTIG 179 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~g--~~r-~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Plln~~~v~~ 179 (354)
..+.||+.+|.||...... ..+ .++++||++.+....+ ..++.|.|+| |+ |..+.+.+.+
T Consensus 44 ~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~---------------~g~~~i~l~g-G~~~~~~~~~l~~ 107 (323)
T PRK07094 44 EFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYE---------------LGYRTIVLQS-GEDPYYTDEKIAD 107 (323)
T ss_pred EECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHH---------------CCCCEEEEec-CCCCCCCHHHHHH
Confidence 3458999999999875321 123 3699999988765332 1356788988 86 6667788999
Q ss_pred eeeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCC
Q psy9577 180 ALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258 (354)
Q Consensus 180 ~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~ 258 (354)
+++.+++..++ ++++++....+. ++.|.+.+...+.+++.+.+++.++++.| ..+.++.+++++.+.+.
T Consensus 108 l~~~i~~~~~l-----~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~---~~s~~~~~~~i~~l~~~-- 177 (323)
T PRK07094 108 IIKEIKKELDV-----AITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHP---GMSFENRIACLKDLKEL-- 177 (323)
T ss_pred HHHHHHccCCc-----eEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC---CCCHHHHHHHHHHHHHc--
Confidence 99999874355 566655323333 55555555456889999999999999875 46789999999877643
Q ss_pred CceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHh
Q psy9577 259 RHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILM 326 (354)
Q Consensus 259 ~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~ 326 (354)
+.. +..-+|=|+ .++.+++.+.++++++++ ...+.+.||.|.++.++ .+++.++..++...++
T Consensus 178 Gi~--v~~~~iiGlpget~ed~~~~l~~l~~l~---~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R 244 (323)
T PRK07094 178 GYE--VGSGFMVGLPGQTLEDLADDILFLKELD---LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLR 244 (323)
T ss_pred CCe--ecceEEEECCCCCHHHHHHHHHHHHhCC---CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 333 444445565 778899999999999853 24567788888887764 3455666566655554
No 53
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.37 E-value=7.9e-13 Score=115.01 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=113.9
Q ss_pred cccceEeeeeecCCCCc-----ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccce
Q psy9577 106 QVGCAINCIFCSTGRQG-----FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g-----~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
.+|||+.|.||.+.... .+..++++|+++.++...+. ...+-|.++| |||++-.+.+++.
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~--------------~g~d~vRiSG-~EP~l~~EHvlev 112 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKK--------------RGCDLVRISG-AEPILGREHVLEV 112 (228)
T ss_pred ccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHh--------------cCCcEEEeeC-CCccccHHHHHHH
Confidence 48999999999975322 13458899998887654331 1235688999 9999999999999
Q ss_pred eeeeeccccccccceeEEeecccchhc-----hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhc
Q psy9577 181 LKLILSDHAYGLSRRHVILSTSGIIPM-----IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT~G~~p~-----i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~ 255 (354)
|+++.+ + +..++|||+.=+ .+.+.....+.+.+|+|..|++.+.+|++.+..+ +.-.+++++.+..
T Consensus 113 IeLl~~-~-------tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aLr~L~~ 183 (228)
T COG5014 113 IELLVN-N-------TFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEY-FRYQLKALRHLHG 183 (228)
T ss_pred HHhccC-c-------eEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHH-HHHHHHHHHHHHh
Confidence 999965 2 788999997532 2233333455688999999999999999877666 7888999998775
Q ss_pred cCCCceeeeeeeeccCCCCchHHH-HHHHHHhhcCccccceeee
Q psy9577 256 YSPRHMITFEYCMLHGINDTDIHA-IELISLMRKNKILTSCKIN 298 (354)
Q Consensus 256 ~~~~~~v~ieyvlI~GvNDs~ed~-~~La~ll~~~~~~~~~~vn 298 (354)
+ +.+++...+ -++ +.||. ++|++-+.+.++ +++.++
T Consensus 184 ~--g~rf~pA~~--~~f--~~Ed~~k~Lak~Lgehp~-~P~~ie 220 (228)
T COG5014 184 K--GHRFWPAVV--YDF--FREDGLKELAKRLGEHPP-IPCRIE 220 (228)
T ss_pred c--Cceeeehhh--hcc--chhhhHHHHHHHhccCCC-CCccee
Confidence 4 345554433 233 33444 458888877443 444443
No 54
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=99.35 E-value=3.9e-13 Score=117.29 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=76.5
Q ss_pred ccceEeeeeecCCCCc---ccccch---hhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc--cccc
Q psy9577 107 VGCAINCIFCSTGRQG---FVRNLT---VGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY--KSTI 178 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g---~~r~lt---~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~--~~v~ 178 (354)
.|||++|+||+++... .++.++ .++|++++.... .+.+|+|+| ||||+|+ +++.
T Consensus 23 ~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~-----------------~~~gVt~sG-GEPllq~~~~~l~ 84 (154)
T TIGR02491 23 AGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP-----------------LIDGLTLSG-GDPLYPRNVEELI 84 (154)
T ss_pred CCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC-----------------CcCeEEEeC-hhhCCCCCHHHHH
Confidence 6999999999987542 246788 666666653211 245799999 9999976 8999
Q ss_pred ceeeeeeccccccccceeEEeecccchhc-h-H-----hhhhcCcceeEEeeccCcccc--cccceeCCC
Q psy9577 179 GALKLILSDHAYGLSRRHVILSTSGIIPM-I-D-----KLAQECPVELAVSLHASNNNL--RNKLVPISK 239 (354)
Q Consensus 179 ~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i-~-----~l~~~~~~~LaiSL~a~~~e~--r~~l~p~~~ 239 (354)
++++.+++..++ ++++.|+|+... + + ++++..+ +.++.++.+++. +..++|..+
T Consensus 85 ~ll~~~k~~~~~-----~~~~~~tG~~~~~~~~~~~~~~~l~~~D--~liDgk~~~~~~~~~~~~~gs~N 147 (154)
T TIGR02491 85 ELVKKIKAEFPE-----KDIWLWTGYTWEEILEDEKHLEVLKYID--VLVDGKFELSKKDLKLKFRGSSN 147 (154)
T ss_pred HHHHHHHHhCCC-----CCEEEeeCccHHHHhcchhHHHHHhhCC--EEEechhhhhcccCCCCCCCCcC
Confidence 999999874355 667779998753 2 1 3444445 469999998764 666777543
No 55
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.29 E-value=1.4e-11 Score=123.69 Aligned_cols=179 Identities=10% Similarity=0.045 Sum_probs=109.8
Q ss_pred ceeEEe-ccccceEeeeeecCCCC-c----c-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc
Q psy9577 99 NTLCIS-TQVGCAINCIFCSTGRQ-G----F-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171 (354)
Q Consensus 99 ~tlcvS-sq~GC~~~C~fC~tg~~-g----~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl 171 (354)
.++.+. +...||++|.||..... . . .+.||.+++..-|...... ++...-.++|.| ||||
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~------------~~~~~v~i~f~G-GEPl 79 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINS------------QTMPQVLFTWHG-GETL 79 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHc------------CCCCeEEEEEEc-cccC
Confidence 444444 33579999999996421 1 1 2347776554433222111 012234578889 9999
Q ss_pred cccc-cccceeeeee---ccccccccceeEEeecccch--hchHhhhhcCcceeEEeeccCcccccccceeCC-CcCchH
Q psy9577 172 LNYK-STIGALKLIL---SDHAYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVPIS-KKYPLK 244 (354)
Q Consensus 172 ln~~-~v~~~l~~l~---~~~g~~~~~r~itvsT~G~~--p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~-~~~~l~ 244 (354)
++.+ +..+++++++ ...++ .++|.|||+. +.+.+++.+..+.+.|||+++. +.|+..-+.. .+.+++
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~i-----~~~i~TNG~ll~~e~~~~l~~~~~~v~ISlDG~~-~~hD~~R~~~~g~gsf~ 153 (412)
T PRK13745 80 MRPLSFYKKALELQKKYARGRQI-----DNCIQTNGTLLTDEWCEFFRENNFLVGVSIDGPQ-EFHDEYRKNKMGKPSFV 153 (412)
T ss_pred CCcHHHHHHHHHHHHHHcCCCce-----EEEEeecCEeCCHHHHHHHHHcCeEEEEEecCCH-HHhhhhcCCCCCCccHH
Confidence 9865 3444444432 22344 7889999964 2232333333457899999984 6676654321 235799
Q ss_pred HHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCC
Q psy9577 245 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNC 304 (354)
Q Consensus 245 ~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~ 304 (354)
.++++++.+.+. +..+.+.+++.+ .+.+++.++.++++++| . ..++++|+.+
T Consensus 154 ~v~~~i~~l~~~--gi~~~i~~vv~~---~n~~~~~e~~~~~~~lg--~-~~~~~~p~~~ 205 (412)
T PRK13745 154 KVMKGINLLKKH--GVEWNAMAVVND---FNADYPLDFYHFFKELD--C-HYIQFAPIVE 205 (412)
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEcC---CccccHHHHHHHHHHcC--C-CeEEEEeccC
Confidence 999999987654 357777777663 34456788889998854 1 3477788766
No 56
>PRK06256 biotin synthase; Validated
Probab=99.27 E-value=2.1e-11 Score=119.03 Aligned_cols=203 Identities=14% Similarity=0.105 Sum_probs=135.4
Q ss_pred cccceEeeeeecCCCCc-----ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeee-ccCccccc-ccccc
Q psy9577 106 QVGCAINCIFCSTGRQG-----FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMM-GMGEPLLN-YKSTI 178 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g-----~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~-GmGEPlln-~~~v~ 178 (354)
..||+.+|.||+..... ..+.++++||++++..+.+. | +..+.|. |.++|... .+.+.
T Consensus 65 s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~------------g---~~~~~l~~~g~~p~~~~~~~~~ 129 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEE------------G---AGTFCIVASGRGPSGKEVDQVV 129 (336)
T ss_pred CCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHC------------C---CCEEEEEecCCCCCchHHHHHH
Confidence 47999999999876431 12458999999998765431 1 2234443 32456542 35788
Q ss_pred ceeeeeeccccccccceeEEeecccchh-c-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhcc
Q psy9577 179 GALKLILSDHAYGLSRRHVILSTSGIIP-M-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 256 (354)
Q Consensus 179 ~~l~~l~~~~g~~~~~r~itvsT~G~~p-~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~ 256 (354)
++++.+++..++ ++.+ +.|... . +++|.+.+...+.+++.+ +++.++++.+ ..+.++.+++++...+.
T Consensus 130 e~i~~i~~~~~i-----~~~~-~~g~l~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~---~~t~~~~i~~i~~a~~~ 199 (336)
T PRK06256 130 EAVKAIKEETDL-----EICA-CLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVT---THTYEDRIDTCEMVKAA 199 (336)
T ss_pred HHHHHHHhcCCC-----cEEe-cCCcCCHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCC---CCCHHHHHHHHHHHHHc
Confidence 888888764333 4544 346543 2 555555554467889999 9999999865 35789999999876543
Q ss_pred CCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHhhCceeEE
Q psy9577 257 SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILMNSGIFVT 333 (354)
Q Consensus 257 ~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~~~gi~v~ 333 (354)
+.+ +..-+|-|.+++.+|..+++++++.++ +..|.+.+++|.++.++ .+++.+++.++...++-.--++.
T Consensus 200 --Gi~--v~~~~I~GlgEt~ed~~~~~~~l~~l~---~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~ 272 (336)
T PRK06256 200 --GIE--PCSGGIIGMGESLEDRVEHAFFLKELD---ADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKE 272 (336)
T ss_pred --CCe--eccCeEEeCCCCHHHHHHHHHHHHhCC---CCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCe
Confidence 334 454556688999999999999999854 23455667778777654 34567777777777665444566
Q ss_pred Eeccccc
Q psy9577 334 IRKIRGN 340 (354)
Q Consensus 334 ir~~~G~ 340 (354)
||-+-|+
T Consensus 273 I~~~~gr 279 (336)
T PRK06256 273 IRIAGGR 279 (336)
T ss_pred eEecCch
Confidence 6666665
No 57
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.23 E-value=9e-11 Score=112.28 Aligned_cols=189 Identities=9% Similarity=0.073 Sum_probs=120.0
Q ss_pred cccceEeeeeecCCCCc-----ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeee-eccCcccccc--ccc
Q psy9577 106 QVGCAINCIFCSTGRQG-----FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVM-MGMGEPLLNY--KST 177 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g-----~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf-~GmGEPlln~--~~v 177 (354)
..||+++|.||+..... ..+.++++||++++....+. .++.+.+ +|.++|.... +.+
T Consensus 36 s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~---------------g~~~~~l~~~g~~~~~~~~~~~~ 100 (296)
T TIGR00433 36 SGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAA---------------GATRFCLVASGRGPKDREFMEYV 100 (296)
T ss_pred cCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHC---------------CCCEEEEEEecCCCChHHHHHHH
Confidence 58999999999875421 24668899999888653321 1334432 3336666431 233
Q ss_pred cceeeeeeccccccccceeEEeecccchh-c-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhc
Q psy9577 178 IGALKLILSDHAYGLSRRHVILSTSGIIP-M-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255 (354)
Q Consensus 178 ~~~l~~l~~~~g~~~~~r~itvsT~G~~p-~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~ 255 (354)
.+..+.+++ .|+ ++.+++ |... . ++.|.+.+...+.+++. .+++.++++.+ ..++++.+++++...+
T Consensus 101 ~~i~~~~~~-~~i-----~~~~~~-g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~l~~ 169 (296)
T TIGR00433 101 EAMVQIVEE-MGL-----KTCATL-GLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLENAKK 169 (296)
T ss_pred HHHHHHHHh-CCC-----eEEecC-CCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHHHHHH
Confidence 333333333 455 666654 6543 3 44444444456888999 79999998864 4688999999987754
Q ss_pred cCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC---cccccchhHHHHHHHHhh
Q psy9577 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN---LICSKNSRIKIFAKILMN 327 (354)
Q Consensus 256 ~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~---~~~p~~e~l~~f~~~l~~ 327 (354)
. +.++ ...+|-|.+++.+++.+++++++.++ +..+.+-++.|.++.+ +.+++.++..++...++.
T Consensus 170 ~--Gi~v--~~~~i~Gl~et~~d~~~~~~~l~~l~---~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~ 237 (296)
T TIGR00433 170 A--GLKV--CSGGIFGLGETVEDRIGLALALANLP---PESVPINFLVKIKGTPLADNKELSADDALKTIALARI 237 (296)
T ss_pred c--CCEE--EEeEEEeCCCCHHHHHHHHHHHHhCC---CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHH
Confidence 3 3344 44556689999999999999998843 1335556667776654 456666666555555443
No 58
>PRK08508 biotin synthase; Provisional
Probab=99.21 E-value=4.7e-11 Score=113.91 Aligned_cols=207 Identities=12% Similarity=0.171 Sum_probs=134.4
Q ss_pred ccccceEeeeeecCCCCc---c--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc--cccccc
Q psy9577 105 TQVGCAINCIFCSTGRQG---F--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL--LNYKST 177 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~g---~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl--ln~~~v 177 (354)
...||+.+|.||+..... . .+.++++||++++..+... .++.+.+.+.|+-+ ..++.+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~---------------g~~~~~lv~sg~~~~~~~~e~~ 77 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKAN---------------GALGFCLVTSGRGLDDKKLEYV 77 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHC---------------CCCEEEEEeccCCCCcccHHHH
Confidence 458999999999875421 1 2347999999988765431 23456665434422 134678
Q ss_pred cceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhc
Q psy9577 178 IGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255 (354)
Q Consensus 178 ~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~ 255 (354)
.++++.+++ .+.++ ++ ..++|... .+++|.+.+...+.+.+++. ++.+.++.+ ..++++.++.++...+
T Consensus 78 ~ei~~~ik~-~~p~l---~i-~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~---~~~~~~~l~~i~~a~~ 148 (279)
T PRK08508 78 AEAAKAVKK-EVPGL---HL-IACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICT---THTWEERFQTCENAKE 148 (279)
T ss_pred HHHHHHHHh-hCCCc---EE-EecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCC---CCCHHHHHHHHHHHHH
Confidence 888888886 33311 33 24678764 26666665544677788885 566777654 4578999998887543
Q ss_pred cCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc--ccccchhHHHHHHHHhhCceeEE
Q psy9577 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL--ICSKNSRIKIFAKILMNSGIFVT 333 (354)
Q Consensus 256 ~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~--~~p~~e~l~~f~~~l~~~gi~v~ 333 (354)
. + +.+...+|.|.++++||..+++.++++++. ..|-+-+++|.++.++ .+++.++..+...+++-.--++.
T Consensus 149 -~-G--i~v~sg~I~GlGEt~ed~~~~l~~lr~L~~---~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~ 221 (279)
T PRK08508 149 -A-G--LGLCSGGIFGLGESWEDRISFLKSLASLSP---HSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNAR 221 (279)
T ss_pred -c-C--CeecceeEEecCCCHHHHHHHHHHHHcCCC---CEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCce
Confidence 2 2 677788999999999999999999998542 1122222445444443 34566677777766665444678
Q ss_pred Eecccccch
Q psy9577 334 IRKIRGNDI 342 (354)
Q Consensus 334 ir~~~G~di 342 (354)
||-.-|++.
T Consensus 222 i~~~~gr~~ 230 (279)
T PRK08508 222 LMVAGGREV 230 (279)
T ss_pred eeecCChhh
Confidence 888888743
No 59
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.21 E-value=6.9e-11 Score=119.29 Aligned_cols=186 Identities=12% Similarity=0.181 Sum_probs=130.0
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----cCccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----MGEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----mGEPl 171 (354)
+....|.+|.|||++|.||..+.. |..|..++++|++++....+. .+..|+|.| +|+|+
T Consensus 134 ~~~~~i~~srGC~~~CsfC~~~~~~G~~r~r~~e~Vv~Ei~~l~~~---------------g~k~i~~~~~d~~~~g~d~ 198 (430)
T TIGR01125 134 RHYAYLKVAEGCNRRCAFCIIPSIRGKLRSRPIEEILKEAERLVDQ---------------GVKEIILIAQDTTAYGKDL 198 (430)
T ss_pred CeEEEEEEccCCCCCCCcCCeecccCCceecCHHHHHHHHHHHHHC---------------CCcEEEEEeECCCccccCC
Confidence 345678899999999999987643 335777899999998764331 134677765 58887
Q ss_pred cccccccceeeeeeccccccccceeEEeec---ccchhchHhhhhcC---cceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILST---SGIIPMIDKLAQEC---PVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT---~G~~p~i~~l~~~~---~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.+.+.+.++++.+.+..++. .+.+++ ..+.+.+-+++... -..+.+.+.+.+++..+.+ ++.++.++
T Consensus 199 ~~~~~l~~Ll~~i~~~~~i~----~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m---~k~~~~~~ 271 (430)
T TIGR01125 199 YRESKLVDLLEELGKVGGIY----WIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLM---RRPGSGEQ 271 (430)
T ss_pred CCcccHHHHHHHHHhcCCcc----EEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhC---CCCCCHHH
Confidence 76667888888776532231 343332 22334433333322 2357889999999998875 56788999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL 310 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~ 310 (354)
++++++.+.+.. ..+.+...+|-|+ +++++++.+..+|+++.+ ...+++-+|.|.++.+.
T Consensus 272 ~~~~i~~l~~~~--~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~---~~~~~~~~~sp~pGT~~ 332 (430)
T TIGR01125 272 QLDFIERLREKC--PDAVLRTTFIVGFPGETEEDFQELLDFVEEGQ---FDRLGAFTYSPEEGTDA 332 (430)
T ss_pred HHHHHHHHHHhC--CCCeEeEEEEEECCCCCHHHHHHHHHHHHhcC---CCEEeeeeccCCCCCcc
Confidence 999998876543 3566666677675 899999999999999843 35678889999887653
No 60
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=99.17 E-value=1.1e-10 Score=112.44 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=113.4
Q ss_pred CCCceeEEeccccceEeeeeecCCCCccccc--chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc
Q psy9577 96 KNRNTLCISTQVGCAINCIFCSTGRQGFVRN--LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN 173 (354)
Q Consensus 96 ~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~--lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln 173 (354)
.+|.-+-+ ..+|++.|+||.+..+-...+ ++.+++ ..+..|+.+. +.|.+|.|+| |+||+=
T Consensus 110 ~drvLll~--t~~C~vyCRyCfRr~~~~~~~~~~~~~~~----~~al~YIa~h----------PeI~eVllSG-GDPL~l 172 (369)
T COG1509 110 PDRVLLLV--TGVCAVYCRYCFRRRFVGQDNQGFNKEEW----DKALDYIAAH----------PEIREVLLSG-GDPLSL 172 (369)
T ss_pred CCeEEEEe--cCcccceeeecccccccccccccCCHHHH----HHHHHHHHcC----------chhheEEecC-CCcccc
Confidence 34444443 479999999999865433222 334443 3334555542 5789999999 999973
Q ss_pred -c---ccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHH
Q psy9577 174 -Y---KSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILA 249 (354)
Q Consensus 174 -~---~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~ 249 (354)
. +.+++.|+.+.+-..+.|+.|-..+----+.+.+..+.......+.+..|.-.+ ++|++ +..++
T Consensus 173 s~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp---~Eit~--------e~~~A 241 (369)
T COG1509 173 SDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHP---NEITP--------EAREA 241 (369)
T ss_pred CHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCCh---hhcCH--------HHHHH
Confidence 2 334444444444344444444433333233333333333322335555555443 24654 55666
Q ss_pred HhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeC-----CCCCCC-CcccccchhHHHHHH
Q psy9577 250 CHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF-----NCFPNS-NLICSKNSRIKIFAK 323 (354)
Q Consensus 250 l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~-----n~~~~~-~~~~p~~e~l~~f~~ 323 (354)
+..+... |..+.-..||++||||+.+-+.+|.+-+...+ +.|| .+..|. .|..| .++..++.+
T Consensus 242 ~~~L~~a--Gv~l~NQsVLLrGVND~~evl~~L~~~L~~~g--------V~PYYl~~~D~~~G~~hfr~~-i~~~~~i~~ 310 (369)
T COG1509 242 CAKLRDA--GVPLLNQSVLLRGVNDDPEVLKELSRALFDAG--------VKPYYLHQLDLVQGAAHFRVP-IAEGLQIVE 310 (369)
T ss_pred HHHHHHc--CceeecchheecccCCCHHHHHHHHHHHHHcC--------CcceEEeccCccCCccceecc-HHHHHHHHH
Confidence 7666544 46788889999999999888777766655522 2343 233344 34444 444445555
Q ss_pred HHhh----CceeEEEec
Q psy9577 324 ILMN----SGIFVTIRK 336 (354)
Q Consensus 324 ~l~~----~gi~v~ir~ 336 (354)
.|+. ...++.++.
T Consensus 311 ~lr~~~SG~~~P~~v~d 327 (369)
T COG1509 311 ELRGRTSGYAVPTLVVD 327 (369)
T ss_pred HHHHhCCCcccceeEEe
Confidence 5543 344555554
No 61
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.17 E-value=7.7e-12 Score=103.59 Aligned_cols=101 Identities=20% Similarity=0.380 Sum_probs=47.6
Q ss_pred cccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc--cccccccce
Q psy9577 106 QVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL--LNYKSTIGA 180 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl--ln~~~v~~~ 180 (354)
..+||++|.||.+... .....++.+++.+.+..... . +.....|+|+| |||| ++++.+.++
T Consensus 5 t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~---------~~~~~~v~~~G-GEPll~~~~~~l~~~ 70 (119)
T PF13394_consen 5 TSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKE----K---------GFRPSTVVFTG-GEPLLYLNPEDLIEL 70 (119)
T ss_dssp -S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHH----T---------T----EEEEES-SSGGGSTTHHHHHHH
T ss_pred cCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHh----c---------CCceEEEEEEC-CCCccccCHHHHHHH
Confidence 4799999999998531 12344565655554432111 1 12335799999 9999 667889999
Q ss_pred eeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeec
Q psy9577 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLH 224 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~ 224 (354)
++.+++ .+ +..+|++.|||..+.-....+.....+.+|+|
T Consensus 71 i~~~~~-~~---~~~~i~i~TNg~~~~~~~~~~~~~~~~~ls~k 110 (119)
T PF13394_consen 71 IEYLKE-RG---PEIKIRIETNGTLPTEEKIEDWKNLEECLSIK 110 (119)
T ss_dssp HCTSTT---------EEEEEE-STTHHHHHH-------------
T ss_pred HHHHHh-hC---CCceEEEEeCCeeccccchhhccccccccccc
Confidence 999987 45 11289999999987433331222233455655
No 62
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=99.17 E-value=8.3e-11 Score=110.09 Aligned_cols=195 Identities=12% Similarity=0.170 Sum_probs=139.8
Q ss_pred ccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeee
Q psy9577 107 VGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKL 183 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~ 183 (354)
.|||++|.||++... +.+..++++++.+.+...+.+ ...||-|.| |+|+-|..+++++++.
T Consensus 126 sgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~---------------GakNvN~Vg-g~Ptp~lp~Ile~l~~ 189 (335)
T COG1313 126 SGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRH---------------GAKNVNFVG-GDPTPHLPFILEALRY 189 (335)
T ss_pred cCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHh---------------cCcceeecC-CCCCCchHHHHHHHHH
Confidence 599999999999744 347889999998887764432 246899999 9999999999999999
Q ss_pred eeccccccccceeEEeecccchh-chHhhhhcC-cceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCce
Q psy9577 184 ILSDHAYGLSRRHVILSTSGIIP-MIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261 (354)
Q Consensus 184 l~~~~g~~~~~r~itvsT~G~~p-~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~ 261 (354)
+... + .+.=.|||+.. ..-++++-. |+.| -|+|-.|++--.++-.+.+- ++-+..++....++. + .
T Consensus 190 ~~~~--i-----PvvwNSnmY~s~E~l~lL~gvVDiyL-~DfKYgNdeca~kySkvp~Y--~eVv~rn~~~~~~~~-g-~ 257 (335)
T COG1313 190 ASEN--I-----PVVWNSNMYMSEETLKLLDGVVDIYL-PDFKYGNDECAEKYSKVPNY--WEVVTRNILEAKEQV-G-G 257 (335)
T ss_pred HhcC--C-----CEEEecCCccCHHHHHHhhccceeee-cccccCCHHHHHHhhcCCch--HHHHHHHHHHHHHhc-C-c
Confidence 8863 4 57778999874 344555543 4443 47999999887777655332 344556666555443 2 6
Q ss_pred eeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeee-CCCCCC-CCc----ccccchhHHHHHHHHhhCceeE
Q psy9577 262 ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP-FNCFPN-SNL----ICSKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 262 v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp-~n~~~~-~~~----~~p~~e~l~~f~~~l~~~gi~v 332 (354)
+.|+..++||-=+. .-+.+.+|+.+.-. ....||+.. |+|.-. .+| ++++.+++++..++.++.|+.-
T Consensus 258 ~iiRHLVlPghlec--CTkpI~~wiae~~g-~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~gl~~ 331 (335)
T COG1313 258 LIIRHLVLPGHLEC--CTKPILRWIAENLG-NDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKLGLTN 331 (335)
T ss_pred eEEEEEecCCchhh--ccHHHHHHHHHhCC-CCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHcCCce
Confidence 99999999995432 25678888876310 236678774 777532 234 5788999999999999998754
No 63
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.14 E-value=1.3e-10 Score=114.90 Aligned_cols=211 Identities=15% Similarity=0.095 Sum_probs=137.7
Q ss_pred eccccceEeeeeecCCCCc-c-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc--cccccccc
Q psy9577 104 STQVGCAINCIFCSTGRQG-F-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL--LNYKSTIG 179 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~g-~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl--ln~~~v~~ 179 (354)
+.+.+|+.+|.||+-.... . ...|+.+||++.+..+... .++.|.+.| ||+. ...+.+.+
T Consensus 78 ~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~---------------Gv~~i~lvg-Ge~p~~~~~e~l~e 141 (366)
T TIGR02351 78 YLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKS---------------GFKEILLVT-GESEKAAGVEYIAE 141 (366)
T ss_pred eECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhC---------------CCCEEEEee-CCCCCCCCHHHHHH
Confidence 3468999999999875321 2 2457999999988754431 256777777 7643 45678999
Q ss_pred eeeeeeccccccccceeEEeecccchh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCC
Q psy9577 180 ALKLILSDHAYGLSRRHVILSTSGIIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258 (354)
Q Consensus 180 ~l~~l~~~~g~~~~~r~itvsT~G~~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~ 258 (354)
+++.+++... .++++.+-+.. .+++|.+.+...+.+++.+.+++.+.+++|..++.++++.+++++...+.
T Consensus 142 ii~~Ik~~~p------~i~Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a-- 213 (366)
T TIGR02351 142 AIKLAREYFS------SLAIEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA-- 213 (366)
T ss_pred HHHHHHHhCC------ccccccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--
Confidence 9999986321 23333322221 35666666655799999999999999999877778899999999987644
Q ss_pred CceeeeeeeeccCCCCchHHHHHHHHHhhcCcccc---ceeeeeeeCCCCCCCCccc---ccchhHHHHHHHHhhCceeE
Q psy9577 259 RHMITFEYCMLHGINDTDIHAIELISLMRKNKILT---SCKINLIPFNCFPNSNLIC---SKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 259 ~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~---~~~vnLIp~n~~~~~~~~~---p~~e~l~~f~~~l~~~gi~v 332 (354)
|.+ .+...+|-|++++.+|+-.++..++.++... ...|-++-++|.++ ++.+ -++.++.+....++-.--.+
T Consensus 214 G~~-~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~~ 291 (366)
T TIGR02351 214 GMR-KIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPFV 291 (366)
T ss_pred CCC-eeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCccc
Confidence 222 2456889999999999999888877643101 13444445677766 5543 33455555555554333344
Q ss_pred EEeccccc
Q psy9577 333 TIRKIRGN 340 (354)
Q Consensus 333 ~ir~~~G~ 340 (354)
.||-+-|+
T Consensus 292 ~i~~s~g~ 299 (366)
T TIGR02351 292 EISLSTRE 299 (366)
T ss_pred ccEEecCC
Confidence 44444444
No 64
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.13 E-value=1.7e-10 Score=117.30 Aligned_cols=185 Identities=14% Similarity=0.243 Sum_probs=126.3
Q ss_pred CceeEEeccccceEeeeeecCCC-CcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----cCccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGR-QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----MGEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~-~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----mGEPl 171 (354)
+....+..|.|||.+|.||..+. .|..|..++++|++++....+ ..+..|+|+| .|+|+
T Consensus 154 ~~~~~i~I~rGC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~---------------~G~keI~l~g~~~~~yG~d~ 218 (459)
T PRK14338 154 PVTVHVPIIYGCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAA---------------RGAKEITLLGQIVDSYGHDL 218 (459)
T ss_pred ceEEEEEcccCCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHH---------------CCCeEEEEeeecCCCccccc
Confidence 45677888999999999998764 244578899999999875332 1256788877 47777
Q ss_pred cccccccceeeeeeccccccccceeEEeec-cc--chhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILST-SG--IIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT-~G--~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.+.+.+.++++.+.+..|+. ++.++| +. +.+. ++.+.+. .-..+.+++.+.+++..+.+ ++.++.++
T Consensus 219 ~~~~~l~~Ll~~l~~~~gi~----~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m---~R~~t~e~ 291 (459)
T PRK14338 219 PGRPDLADLLEAVHEIPGLE----RLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRM---RRGYTVAR 291 (459)
T ss_pred CChHHHHHHHHHHHhcCCcc----eEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhc---cCCCCHHH
Confidence 54455777777776533431 344433 22 2223 2233332 12357889999999998875 46789999
Q ss_pred HHHHHhhhhccCCCceeeeeeeec-cCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCML-HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI-~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
++++++.+.+.. ..+.+..-+| ..-+++++++.+..+|+++++ ...+++-+|.|.++.+
T Consensus 292 ~~~~i~~lr~~~--pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~---~~~v~i~~ysp~pGT~ 351 (459)
T PRK14338 292 YRELIARIREAI--PDVSLTTDIIVGHPGETEEQFQRTYDLLEEIR---FDKVHIAAYSPRPGTL 351 (459)
T ss_pred HHHHHHHHHHhC--CCCEEEEEEEEECCCCCHHHHHHHHHHHHHcC---CCEeEEEecCCCCCCh
Confidence 999998876542 3466654444 335788999999999999843 3567888999988754
No 65
>KOG2876|consensus
Probab=99.11 E-value=2.9e-11 Score=111.63 Aligned_cols=186 Identities=17% Similarity=0.279 Sum_probs=133.0
Q ss_pred CceeEEeccccceEeeeeecCCCC----cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ----GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN 173 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~----g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln 173 (354)
+..+.+|..-.||++|.||+.... ...+-|+.+||+.... .| .. ..++.+-+.| |||+..
T Consensus 10 htyLrislte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~---~F-~~-----------qgv~knrLtg-geptIr 73 (323)
T KOG2876|consen 10 HTYLRISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAG---LF-AP-----------QGVDKNRLTG-GEPLIR 73 (323)
T ss_pred hhhhhhhhhhccccccceechhcCCcCccchhhcchhhhHHhhh---hh-hH-----------hhhhhhhhcC-CCCccc
Confidence 456778888999999999996532 1245678888887332 22 11 2366788889 999997
Q ss_pred cccccceeeeeeccccccccceeEEeecccchhc--hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 174 ~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~--i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
..+.+...-+.+-.|+ +.+-|+|||++-. +-.+-+..-..+.+|++....+++.++|. +.....|+..++
T Consensus 74 -~di~~i~~g~~~l~gL----ks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r---r~g~v~V~~~iq 145 (323)
T KOG2876|consen 74 -QDIVPIVAGLSSLPGL----KSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR---RKGFVKVWASIQ 145 (323)
T ss_pred -ccccchhhhhhcccch----hhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh---hccHHHHHHHHh
Confidence 5566666666665666 4789999998531 11222223346889999999999999874 567899999998
Q ss_pred hhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCccccc
Q psy9577 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSK 314 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~ 314 (354)
.....+ ..++.++.++.+|+|++ ++-.++.+-+. .+..|..|.|.|+++.+|...+
T Consensus 146 ~a~~lg-y~pvkvn~v~~k~~n~~--ev~Dfv~~tr~----~p~DVrfIe~mpf~gn~~~t~~ 201 (323)
T KOG2876|consen 146 LAIELG-YNPVKVNCVVMKGLNED--EVFDFVLLTRM----RPLDVRFIEFMPFDGNKWNTKS 201 (323)
T ss_pred HHhhhC-CCCcceeeEEEeccCCC--cccceeeecCC----CCcceEEEEecccCCCcccccc
Confidence 776554 35799999999999996 35555555555 5688999999999888776443
No 66
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=99.10 E-value=3.4e-11 Score=104.28 Aligned_cols=100 Identities=22% Similarity=0.258 Sum_probs=71.0
Q ss_pred EeeecCCCceeEEeccccceEeeeeecCCCC-cc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc
Q psy9577 91 VFIPEKNRNTLCISTQVGCAINCIFCSTGRQ-GF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 167 (354)
Q Consensus 91 v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~-g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm 167 (354)
++..++++.++-+-. .|||++|+||++... .. ++.++.+|+++++..... .+.+|+|+|
T Consensus 8 ~~~d~p~~~~~~vfl-~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~----------------~~~gVt~SG- 69 (147)
T TIGR02826 8 VFQEVPNEYSLAFYI-TGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRS----------------LISCVLFLG- 69 (147)
T ss_pred EEeecCCCEEEEEEe-CCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCC----------------CCCEEEEec-
Confidence 334444444444444 699999999999743 11 467999999998765321 245799999
Q ss_pred CccccccccccceeeeeeccccccccceeEEeecccchhc-hHhhhhcCc
Q psy9577 168 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECP 216 (354)
Q Consensus 168 GEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~ 216 (354)
|| ++++++.++++.+++ .|+ ++.+.|+|..+. .+++++.++
T Consensus 70 GE--l~~~~l~~ll~~lk~-~Gl-----~i~l~Tg~~~~~~~~~il~~iD 111 (147)
T TIGR02826 70 GE--WNREALLSLLKIFKE-KGL-----KTCLYTGLEPKDIPLELVQHLD 111 (147)
T ss_pred hh--cCHHHHHHHHHHHHH-CCC-----CEEEECCCCCHHHHHHHHHhCC
Confidence 99 677999999999997 687 899999876543 334544433
No 67
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.07 E-value=4.9e-10 Score=113.46 Aligned_cols=184 Identities=10% Similarity=0.197 Sum_probs=123.6
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc---------
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM--------- 167 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm--------- 167 (354)
+....+.++.|||.+|.||..+.. |-.|..++++|++++...... .+..|+|.|.
T Consensus 138 ~~~a~v~isrGCp~~CsFC~ip~~~G~~rsr~~e~Vv~Ei~~l~~~---------------g~kei~l~~~d~~~yg~d~ 202 (440)
T PRK14862 138 RHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLREAERLVKA---------------GVKELLVISQDTSAYGVDV 202 (440)
T ss_pred CcEEEEEeccCCCCCCccCCcccccCCccccCHHHHHHHHHHHHHC---------------CCceEEEEecChhhhcccc
Confidence 455677889999999999997643 335778899999998754321 1345666532
Q ss_pred --------CccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcc--eeEEeeccCcccccccceeC
Q psy9577 168 --------GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPV--ELAVSLHASNNNLRNKLVPI 237 (354)
Q Consensus 168 --------GEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~--~LaiSL~a~~~e~r~~l~p~ 237 (354)
|+|+ .+.+.++++.+.+ .|+. .|--++.+++..+.+-+++.+..+ .+.+++.+.+++..+.+
T Consensus 203 ~~~~~~~~~~~~--~~~~~~Ll~~l~~-~~~~--~r~~~~~p~~~~dell~~m~~g~~~~~l~IglESgs~~vLk~m--- 274 (440)
T PRK14862 203 KYRTGFWNGRPV--KTRMTDLCEALGE-LGAW--VRLHYVYPYPHVDEVIPLMAEGKILPYLDIPFQHASPRVLKRM--- 274 (440)
T ss_pred ccccccccccch--hhHHHHHHHHHHh-cCCE--EEEecCCCCcCCHHHHHHHhcCCCccccccccccCCHHHHHhc---
Confidence 3444 2567788887776 3541 111123445554443333333322 56789999999998875
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
++.+..++.+++++.+.+.. ..+.+...+|=| -++++++.+++.+|+++++ ...+++-+|.|.++.+
T Consensus 275 ~r~~~~~~~~~~i~~lr~~~--~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~---~d~~~~f~ysP~pGT~ 342 (440)
T PRK14862 275 KRPASVEKTLERIKKWREIC--PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ---LDRVGCFKYSPVEGAT 342 (440)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCceecccEEEECCCCCHHHHHHHHHHHHHcC---CCeeeeEeecCCCCCc
Confidence 46788899999998776543 345555555544 5889999999999999843 2567888999998765
No 68
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.06 E-value=7.1e-10 Score=109.84 Aligned_cols=171 Identities=16% Similarity=0.208 Sum_probs=109.9
Q ss_pred ceEeeeeecCCCCccc-ccch---hhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeee
Q psy9577 109 CAINCIFCSTGRQGFV-RNLT---VGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLI 184 (354)
Q Consensus 109 C~~~C~fC~tg~~g~~-r~lt---~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l 184 (354)
||++|.||.-...... +.+| ++++++++..... ..+ -.|++-| ||||++.+.+.+.+..+
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~--------------~~~-v~~~w~G-GEPlL~~~~f~~~~~~l 81 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASN--------------GDK-VTFTWQG-GEPLLAGLDFYRKAVAL 81 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCC--------------CCe-eEEEEEC-CccccchHHHHHHHHHH
Confidence 9999999987644332 2243 3444444432211 123 3589999 99999976666665554
Q ss_pred eccc--cccccceeEEeecccch--hchHhhhhcCcceeEEeeccCcccccccceeC-CCcCchHHHHHHHhhhhccCCC
Q psy9577 185 LSDH--AYGLSRRHVILSTSGII--PMIDKLAQECPVELAVSLHASNNNLRNKLVPI-SKKYPLKELILACHRYITYSPR 259 (354)
Q Consensus 185 ~~~~--g~~~~~r~itvsT~G~~--p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~-~~~~~l~~il~~l~~~~~~~~~ 259 (354)
.+.. |..| +-++.|||+. +.+-++.++.++.+-|||+.+ ++.|++.-+. +.+-+.+.++++++.+.+. +
T Consensus 82 ~~k~~~~~~i---~~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~ 155 (378)
T COG0641 82 QQKYANGKTI---SNALQTNGTLLNDEWAEFLAEHDFLIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLELLQAH--G 155 (378)
T ss_pred HHHHhcCCee---EEEEEEcccccCHHHHHHHHhcCceEEEeccCc-hHhccccccCCCCCccHHHHHHHHHHHHHc--C
Confidence 4322 3322 4559999975 334455555566788999999 6788887653 3356799999999987653 2
Q ss_pred ceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC
Q psy9577 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN 307 (354)
Q Consensus 260 ~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~ 307 (354)
..+.+.+++- +++.++..++-+++...+ ...+.+||..+...
T Consensus 156 v~~~~~~vv~---~~n~~~~~ei~~~l~~~g---~~~i~fip~~~~~~ 197 (378)
T COG0641 156 VDFNTLTVVN---RQNVLHPEEIYHFLKSEG---SKFIQFIPLVESDN 197 (378)
T ss_pred CcEEEEEEEc---hhHhhCHHHHHHHHHHcc---cceEEEEecccCCC
Confidence 4555556633 445678888888887743 24566677665443
No 69
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.05 E-value=1.1e-09 Score=110.57 Aligned_cols=186 Identities=16% Similarity=0.246 Sum_probs=126.3
Q ss_pred CceeEEeccccceEeeeeecCCC-CcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----cCccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGR-QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----MGEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~-~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----mGEPl 171 (354)
+....+.+|.||+.+|.||..+. .|..|..++++|++++....+. .+..|+|.| .|+++
T Consensus 138 ~~~~~i~~srGC~~~CsfC~~~~~~g~~r~r~~e~Vv~Ei~~l~~~---------------g~~ei~l~~~~~~~yg~d~ 202 (429)
T TIGR00089 138 KTRAFLKIQEGCDKFCTYCIVPYARGRERSRPPEDILEEVKELVSK---------------GVKEIVLLGQNVGAYGKDL 202 (429)
T ss_pred CeEEEEEHHhCcCCCCCcCceecccCCCCCCCHHHHHHHHHHHHHC---------------CCceEEEEeeccccccCCC
Confidence 45567888999999999999764 2345778899999998754331 244567665 35554
Q ss_pred cccccccceeeeeeccccccccceeEEeecc---cchhchHhhhhcC---cceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPMIDKLAQEC---PVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~i~~l~~~~---~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.+...+.++++.+++..|+ ..+.+++. .+.+.+.+++.+. -..+.+.+.+.+++..+.+ +|.++.++
T Consensus 203 ~~~~~l~~Ll~~l~~~~g~----~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m---~R~~~~~~ 275 (429)
T TIGR00089 203 KGETNLADLLRELSKIDGI----ERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRM---NRKYTREE 275 (429)
T ss_pred CCCcCHHHHHHHHhcCCCC----CEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhC---CCCCCHHH
Confidence 4334566666666543243 24656542 2333333333332 2357889999999998764 46788999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL 310 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~ 310 (354)
+.++++.+.+.. ..+.+..-+|=|+ +++++++.+..+|+++++ ...+++-+|.|.++.++
T Consensus 276 ~~~~i~~lr~~~--~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~---~~~~~~~~~sp~pgT~~ 336 (429)
T TIGR00089 276 YLDIVEKIRAKI--PDAAITTDIIVGFPGETEEDFEETLDLVEEVK---FDKLHSFIYSPRPGTPA 336 (429)
T ss_pred HHHHHHHHHHHC--CCCEEEeeEEEECCCCCHHHHHHHHHHHHhcC---CCEeeccccCCCCCCch
Confidence 999998776442 3466776666664 899999999999999843 36788889999887653
No 70
>PLN02389 biotin synthase
Probab=99.03 E-value=1.4e-09 Score=108.02 Aligned_cols=203 Identities=11% Similarity=0.136 Sum_probs=133.6
Q ss_pred cccceEeeeeecCCCC---cc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeee-----ccCccccccc
Q psy9577 106 QVGCAINCIFCSTGRQ---GF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMM-----GMGEPLLNYK 175 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~---g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~-----GmGEPlln~~ 175 (354)
..+|+.+|.||+-... +. .+.++++||++.+..+... | ++.+.+. +.|||.. ++
T Consensus 90 T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~------------G---~~~~~ivts~rg~~~e~~~-~e 153 (379)
T PLN02389 90 TGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEA------------G---STRFCMGAAWRDTVGRKTN-FN 153 (379)
T ss_pred cCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHc------------C---CCEEEEEecccCCCCChhH-HH
Confidence 5899999999986431 22 2358999999988754331 1 2233332 2367764 68
Q ss_pred cccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhh
Q psy9577 176 STIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253 (354)
Q Consensus 176 ~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~ 253 (354)
.+.++++.+++ .++ .+++ |+|+.. .+++|.+.+...+.++|++ .++.++++++. .++++.++.++..
T Consensus 154 ~i~eiir~ik~-~~l-----~i~~-s~G~l~~E~l~~LkeAGld~~~~~LeT-s~~~y~~i~~~---~s~e~rl~ti~~a 222 (379)
T PLN02389 154 QILEYVKEIRG-MGM-----EVCC-TLGMLEKEQAAQLKEAGLTAYNHNLDT-SREYYPNVITT---RSYDDRLETLEAV 222 (379)
T ss_pred HHHHHHHHHhc-CCc-----EEEE-CCCCCCHHHHHHHHHcCCCEEEeeecC-ChHHhCCcCCC---CCHHHHHHHHHHH
Confidence 99999999985 565 5654 778764 2666666654567889998 47788888753 3789999999877
Q ss_pred hccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHhhCce
Q psy9577 254 ITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILMNSGI 330 (354)
Q Consensus 254 ~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~~~gi 330 (354)
.+. | +.+..-+|-|.+++.+|..+++.+++.++. .+..|.+-+++|+++.++ .+++.++..+...+.+-.--
T Consensus 223 ~~~--G--i~v~sg~IiGlgEt~edrv~~l~~Lr~L~~-~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP 297 (379)
T PLN02389 223 REA--G--ISVCSGGIIGLGEAEEDRVGLLHTLATLPE-HPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMP 297 (379)
T ss_pred HHc--C--CeEeEEEEECCCCCHHHHHHHHHHHHhccc-CCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 543 3 455667888999999999999999988320 023344445667777654 34666666666665543222
Q ss_pred eEEEeccccc
Q psy9577 331 FVTIRKIRGN 340 (354)
Q Consensus 331 ~v~ir~~~G~ 340 (354)
...++-+-|+
T Consensus 298 ~~~i~i~~gr 307 (379)
T PLN02389 298 KAMVRLSAGR 307 (379)
T ss_pred Cccccccccc
Confidence 3344443343
No 71
>PRK15108 biotin synthase; Provisional
Probab=99.03 E-value=1.8e-09 Score=106.08 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=132.9
Q ss_pred cccceEeeeeecCCC---Ccc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccC-cc-cccccccc
Q psy9577 106 QVGCAINCIFCSTGR---QGF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG-EP-LLNYKSTI 178 (354)
Q Consensus 106 q~GC~~~C~fC~tg~---~g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmG-EP-lln~~~v~ 178 (354)
+.+|+.+|.||+... .+. .+.++++||++.+..+.. ..++.|++.+.| +| ...++.+.
T Consensus 50 Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~---------------~G~~~i~i~~~g~~p~~~~~e~i~ 114 (345)
T PRK15108 50 TGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKA---------------AGSTRFCMGAAWKNPHERDMPYLE 114 (345)
T ss_pred CCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHH---------------cCCCEEEEEecCCCCCcchHHHHH
Confidence 589999999998753 222 234899999998765432 124455554433 56 45578899
Q ss_pred ceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhcc
Q psy9577 179 GALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 256 (354)
Q Consensus 179 ~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~ 256 (354)
++++.+++ .++ .+++ |+|..+ .+++|.+.+...+.++|++ +++.+.++++ ..++++.++.++...+.
T Consensus 115 ~~i~~ik~-~~i-----~v~~-s~G~ls~e~l~~LkeAGld~~n~~leT-~p~~f~~I~~---~~~~~~rl~~i~~a~~~ 183 (345)
T PRK15108 115 QMVQGVKA-MGL-----ETCM-TLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLEKVRDA 183 (345)
T ss_pred HHHHHHHh-CCC-----EEEE-eCCcCCHHHHHHHHHcCCCEEeecccc-ChHhcCCCCC---CCCHHHHHHHHHHHHHc
Confidence 99999985 565 5665 588664 2566666655578999999 8999999975 34789999999887543
Q ss_pred CCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeee---CCCCCCCCccc---ccchhHHHHHHHHhhCce
Q psy9577 257 SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP---FNCFPNSNLIC---SKNSRIKIFAKILMNSGI 330 (354)
Q Consensus 257 ~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp---~n~~~~~~~~~---p~~e~l~~f~~~l~~~gi 330 (354)
| +.+..-+|=|..++.+|.-+++..++.+ ...+..|| ++|.++.++.. .+..+..+...+++=.--
T Consensus 184 --G--~~v~sg~i~GlgEt~ed~v~~~~~l~~l----~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp 255 (345)
T PRK15108 184 --G--IKVCSGGIVGLGETVKDRAGLLLQLANL----PTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMP 255 (345)
T ss_pred --C--CceeeEEEEeCCCCHHHHHHHHHHHHhc----cCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 3 3556566778999999999999988884 22222344 46666665532 244555555555443223
Q ss_pred eEEEeccccc
Q psy9577 331 FVTIRKIRGN 340 (354)
Q Consensus 331 ~v~ir~~~G~ 340 (354)
++.++-+-|+
T Consensus 256 ~~~i~i~~g~ 265 (345)
T PRK15108 256 TSYVRLSAGR 265 (345)
T ss_pred CceeeecccH
Confidence 3445555554
No 72
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.03 E-value=4.9e-11 Score=101.15 Aligned_cols=80 Identities=31% Similarity=0.536 Sum_probs=50.0
Q ss_pred cccceEeeeeecCCCCcc---cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc--ccccccce
Q psy9577 106 QVGCAINCIFCSTGRQGF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL--NYKSTIGA 180 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll--n~~~v~~~ 180 (354)
+.|||++|.||+...... ...++ .+.++++...... ..+..|+|+| ||||+ +++.+.++
T Consensus 12 t~~Cnl~C~yC~~~~~~~~~~~~~~~-~~~~~~ii~~~~~--------------~~~~~i~l~G-GEPll~~~~~~l~~i 75 (139)
T PF13353_consen 12 TNGCNLRCKYCFNSEIWKFKRGKELS-EEIIEEIIEELKN--------------YGIKGIVLTG-GEPLLHENYDELLEI 75 (139)
T ss_dssp EC--SB--TT-TTCCCS-TT-SEEC--HHHHHHHCHHHCC--------------CCCCEEEEEC-STGGGHHSHHHHHHH
T ss_pred cCcccccCcCcCCcccCccccccccc-chhhhhhhhHHhc--------------CCceEEEEcC-CCeeeeccHhHHHHH
Confidence 578999999999764332 22344 5555555533221 2457899999 99999 88999999
Q ss_pred eeeeeccccccccceeEEeecccchh
Q psy9577 181 LKLILSDHAYGLSRRHVILSTSGIIP 206 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT~G~~p 206 (354)
++.+++... ..+.+.|||...
T Consensus 76 ~~~~k~~~~-----~~~~~~tng~~~ 96 (139)
T PF13353_consen 76 LKYIKEKFP-----KKIIILTNGYTL 96 (139)
T ss_dssp HHHHHHTT------SEEEEEETT--H
T ss_pred HHHHHHhCC-----CCeEEEECCCch
Confidence 999998433 267788999764
No 73
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.02 E-value=6.2e-10 Score=107.67 Aligned_cols=198 Identities=18% Similarity=0.201 Sum_probs=124.4
Q ss_pred EeccccceEeeeeecCCCCcc---cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccC-cccccccccc
Q psy9577 103 ISTQVGCAINCIFCSTGRQGF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG-EPLLNYKSTI 178 (354)
Q Consensus 103 vSsq~GC~~~C~fC~tg~~g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmG-EPlln~~~v~ 178 (354)
|..+.||+.+|.||+-..... .+.++++||++.+..+.. ..++.|.|.| | .|..+.+.+.
T Consensus 9 i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~---------------~G~~~i~l~g-g~~~~~~~~~~~ 72 (309)
T TIGR00423 9 INFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVA---------------KGATEVCIQG-GLNPQLDIEYYE 72 (309)
T ss_pred ecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHH---------------CCCCEEEEec-CCCCCCCHHHHH
Confidence 456789999999998654221 246899999999875433 1256788887 6 5777888899
Q ss_pred ceeeeeeccccccccceeEE-ee---------cccch-hc-hHhhhhcCcceeE-EeeccCcccccccceeCCCcCchHH
Q psy9577 179 GALKLILSDHAYGLSRRHVI-LS---------TSGII-PM-IDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 179 ~~l~~l~~~~g~~~~~r~it-vs---------T~G~~-p~-i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
++++.+++. +..+ ++. +| +.|+. +. +++|.+.+-..+. .+....+++.+++++| ++.+.++
T Consensus 73 ~i~~~Ik~~-~~~i---~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~--~~~t~~~ 146 (309)
T TIGR00423 73 ELFRAIKQE-FPDV---HIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICP--NKLSSDE 146 (309)
T ss_pred HHHHHHHHH-CCCc---eEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCC--CCCCHHH
Confidence 999999873 3222 332 11 34554 22 5555554422343 4677788999999987 4557788
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC--CCCCC-----CcccccchhH
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN--CFPNS-----NLICSKNSRI 318 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n--~~~~~-----~~~~p~~e~l 318 (354)
.+++++...+. |.++. ..+|=|...+.+|..+++.++++++.....-..+||++ |.+.. ...+++.++.
T Consensus 147 ~l~~i~~a~~~--Gi~~~--s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~ 222 (309)
T TIGR00423 147 WLEVIKTAHRL--GIPTT--ATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDD 222 (309)
T ss_pred HHHHHHHHHHc--CCCce--eeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHH
Confidence 88888876543 33444 55566777899999999999988542111112345543 42221 1244555565
Q ss_pred HHHHHHHh
Q psy9577 319 KIFAKILM 326 (354)
Q Consensus 319 ~~f~~~l~ 326 (354)
.+...+++
T Consensus 223 lr~iA~~R 230 (309)
T TIGR00423 223 LKVIAISR 230 (309)
T ss_pred HHHHHHHH
Confidence 55555543
No 74
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.02 E-value=8.2e-10 Score=108.34 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=126.1
Q ss_pred EeccccceEeeeeecCCCCc---ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccc
Q psy9577 103 ISTQVGCAINCIFCSTGRQG---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179 (354)
Q Consensus 103 vSsq~GC~~~C~fC~tg~~g---~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~ 179 (354)
++...+|+.+|.||+-.... -...++++||++++..+... .++.|.|+|.-+|....+.+.+
T Consensus 43 i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~---------------G~~~i~l~gG~~p~~~~~~~~~ 107 (343)
T TIGR03551 43 INFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKA---------------GATEVCIQGGIHPDLDGDFYLD 107 (343)
T ss_pred cccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHC---------------CCCEEEEEeCCCCCCCHHHHHH
Confidence 34458999999999864321 11348999999998765441 2567899883478888888999
Q ss_pred eeeeeeccccccccceeEEe----------ecccchh--chHhhhhcCcceeE-EeeccCcccccccceeCCCcCchHHH
Q psy9577 180 ALKLILSDHAYGLSRRHVIL----------STSGIIP--MIDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLKEL 246 (354)
Q Consensus 180 ~l~~l~~~~g~~~~~r~itv----------sT~G~~p--~i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~~i 246 (354)
+++.+++ .+.++ +++. +|+|... .+++|.+.+-..+. .+....+++.|++++|. +.+.++.
T Consensus 108 i~~~Ik~-~~~~i---~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~--~~~~~~~ 181 (343)
T TIGR03551 108 ILRAVKE-EVPGM---HIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPD--KLSTAEW 181 (343)
T ss_pred HHHHHHH-HCCCc---eEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCC--CCCHHHH
Confidence 9999987 33211 4443 2567643 25566665422333 34566778899999863 3467888
Q ss_pred HHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC--CCCCCCc-------ccccchh
Q psy9577 247 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN--CFPNSNL-------ICSKNSR 317 (354)
Q Consensus 247 l~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n--~~~~~~~-------~~p~~e~ 317 (354)
+++++...+. | +.+...+|=|..++.+|..+.+.++++++.....-..+||+| +. +.+. .+.+.++
T Consensus 182 ~~~i~~a~~~--G--i~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~-gT~l~~~~~~~~~~~~~~ 256 (343)
T TIGR03551 182 IEIIKTAHKL--G--IPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHY-NAPLYLKGMARPGPTGRE 256 (343)
T ss_pred HHHHHHHHHc--C--CcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCC-CCccccccCCCCCCCHHH
Confidence 8888876543 3 344556666888999999999999998542111123456655 42 2222 2235556
Q ss_pred HHHHHHHHh
Q psy9577 318 IKIFAKILM 326 (354)
Q Consensus 318 l~~f~~~l~ 326 (354)
..+....++
T Consensus 257 ~lr~iAv~R 265 (343)
T TIGR03551 257 DLKVHAIAR 265 (343)
T ss_pred HHHHHHHHH
Confidence 655555554
No 75
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1e-10 Score=107.21 Aligned_cols=85 Identities=25% Similarity=0.506 Sum_probs=66.1
Q ss_pred CCceeEEeccccceEeeeeecCCCCc------ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcc
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGRQG------FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP 170 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~~g------~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEP 170 (354)
+|.++-|++ .|||++|.||.|.... -.+.++.+||++++..... ...+|+|+| |||
T Consensus 21 Gr~~vFVR~-~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~~----------------~~~~V~lTG-GEP 82 (212)
T COG0602 21 GRPSVFVRF-AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLGY----------------KARGVSLTG-GEP 82 (212)
T ss_pred cceeEEEEc-CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcCC----------------CcceEEEeC-CcC
Confidence 466777776 7999999999986321 1356789999998864211 223799999 999
Q ss_pred ccccccccceeeeeeccccccccceeEEeecccchh
Q psy9577 171 LLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP 206 (354)
Q Consensus 171 lln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p 206 (354)
+++ +++.++++.+++ .|+ ++.++|||..|
T Consensus 83 ~~~-~~l~~Ll~~l~~-~g~-----~~~lETngti~ 111 (212)
T COG0602 83 LLQ-PNLLELLELLKR-LGF-----RIALETNGTIP 111 (212)
T ss_pred CCc-ccHHHHHHHHHh-CCc-----eEEecCCCCcc
Confidence 765 889999999997 688 99999999876
No 76
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=98.97 E-value=4.1e-09 Score=105.90 Aligned_cols=185 Identities=18% Similarity=0.308 Sum_probs=122.3
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----cCccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----MGEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----mGEPl 171 (354)
+....|.++.|||.+|.||..+.. |-.|..++++|++++....+ ..+..|+|.| .|.-+
T Consensus 137 ~~~~~i~isrGCp~~CsfC~~~~~~g~~r~r~~e~I~~Ei~~l~~---------------~g~~ei~l~~~~~~~y~~d~ 201 (414)
T TIGR01579 137 HTRAFIKVQDGCNFFCSYCIIPFARGRSRSVPMEAILKQVKILVA---------------KGYKEIVLTGVNLGSYGDDL 201 (414)
T ss_pred CeEEEEEeccCcCCCCCCCceeeecCCCccCCHHHHHHHHHHHHH---------------CCCceEEEeeEccchhccCC
Confidence 344567788999999999987642 33577899999999875332 1255677776 23222
Q ss_pred cccccccceeeeeeccccccccceeEEeeccc---chhchHhhh-hcC--cceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTSG---IIPMIDKLA-QEC--PVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G---~~p~i~~l~-~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.+...+.++++.+.+..|+ .++.+++.- +.+.+-+++ +.. -..|.+.+.+.+++..+.+ +|+++.++
T Consensus 202 ~~~~~l~~Ll~~l~~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m---~R~~~~~~ 274 (414)
T TIGR01579 202 KNGTSLAKLLEQILQIPGI----KRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRM---RRKYTRDD 274 (414)
T ss_pred CCCCcHHHHHHHHhcCCCC----cEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhc---CCCCCHHH
Confidence 2223466666666543343 145665421 222222333 222 1357889999999998875 57788999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++++.+.+.. ..+.+..-+|=| -++++|++++..+|++.++ ...+++-+|.|.++.+
T Consensus 275 ~~~~v~~l~~~~--~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~---~~~~~~~~~sp~pGT~ 334 (414)
T TIGR01579 275 FLKLVNKLRSVR--PDYAFGTDIIVGFPGESEEDFQETLRMVKEIE---FSHLHIFPYSARPGTP 334 (414)
T ss_pred HHHHHHHHHHhC--CCCeeeeeEEEECCCCCHHHHHHHHHHHHhCC---CCEEEeeecCCCCCCc
Confidence 999998776432 235555555545 4899999999999999853 3578888999998865
No 77
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.97 E-value=1.1e-09 Score=107.11 Aligned_cols=199 Identities=18% Similarity=0.154 Sum_probs=120.6
Q ss_pred ccccceEeeeeecCCCCc-c--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccccccee
Q psy9577 105 TQVGCAINCIFCSTGRQG-F--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~g-~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l 181 (354)
...+|+.+|.||+..... . ...++++||++.+..+.. ..++.|.|+|..+|....+.+.+++
T Consensus 47 ~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~---------------~G~~~i~l~gG~~p~~~~~~~~~li 111 (340)
T TIGR03699 47 YTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVA---------------YGGTQILLQGGVNPDLGLDYYEDLF 111 (340)
T ss_pred cchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHH---------------cCCcEEEEecCCCCCCCHHHHHHHH
Confidence 357999999999743221 1 235899999998875432 1256789988458877778888888
Q ss_pred eeeeccccccccc-----ee--EEeecccch-hc-hHhhhhcCcceeE-EeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 182 KLILSDHAYGLSR-----RH--VILSTSGII-PM-IDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 182 ~~l~~~~g~~~~~-----r~--itvsT~G~~-p~-i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+.+++ .+..+.. -. ....|+|+. +. +++|.+.+...+. ......+++.++.+.| ++.+.++.++.++
T Consensus 112 ~~Ik~-~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~--~~~s~~~~l~~i~ 188 (340)
T TIGR03699 112 RAIKA-RFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISP--KKISSEEWLEVME 188 (340)
T ss_pred HHHHH-HCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCC--CCCCHHHHHHHHH
Confidence 88886 3321110 00 011256765 22 4444444322232 1244578889998876 3567888899888
Q ss_pred hhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC--CCCCCCc---ccccchhHHHHHHHHh
Q psy9577 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN--CFPNSNL---ICSKNSRIKIFAKILM 326 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n--~~~~~~~---~~p~~e~l~~f~~~l~ 326 (354)
...+. |.++. .-+|=|...+.+|..+++.++++++.....-..+||+| | .+.++ .+++.++..+.....+
T Consensus 189 ~a~~~--Gi~v~--~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p-~~tpl~~~~~~~~~e~l~~iA~~R 263 (340)
T TIGR03699 189 TAHKL--GLPTT--ATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQP-GNTELGKKRPATSTEYLKVLAISR 263 (340)
T ss_pred HHHHc--CCCcc--ceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccC-CCCcccCCCCCCHHHHHHHHHHHH
Confidence 76543 34444 44555678888999999999988542112223456643 4 23332 3455566665555554
No 78
>PRK05481 lipoyl synthase; Provisional
Probab=98.97 E-value=3.1e-09 Score=101.98 Aligned_cols=199 Identities=11% Similarity=0.071 Sum_probs=131.6
Q ss_pred eccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc----cccccccccc
Q psy9577 104 STQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE----PLLNYKSTIG 179 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE----Plln~~~v~~ 179 (354)
..+.||+.+|.||+.+... .+.++++||++++..... ..++.|++.| |+ |-...+.+.+
T Consensus 58 ~is~GC~~~C~FC~i~~~r-~~s~~~eeI~~ea~~l~~---------------~G~kEI~L~g-g~~~d~~~~~~~~l~~ 120 (289)
T PRK05481 58 ILGDICTRRCPFCDVATGR-PLPLDPDEPERVAEAVAR---------------MGLKYVVITS-VDRDDLPDGGAQHFAE 120 (289)
T ss_pred EecccccCCCCCceeCCCC-CCCCCHHHHHHHHHHHHH---------------CCCCEEEEEE-eeCCCcccccHHHHHH
Confidence 3679999999999876533 467899999999875433 1357899998 65 2222345667
Q ss_pred eeeeeecc-ccccccceeEEeecc-c--chhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhc
Q psy9577 180 ALKLILSD-HAYGLSRRHVILSTS-G--IIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255 (354)
Q Consensus 180 ~l~~l~~~-~g~~~~~r~itvsT~-G--~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~ 255 (354)
+++.+++. .++ +|.+.|. . ..+.+.++.+... .+.-..|-+.++.++++. ++++.++.++.++.+.+
T Consensus 121 Ll~~I~~~~p~i-----rI~~l~~~~~~~~e~L~~l~~ag~-~i~~~~~ets~~vlk~m~---r~~t~e~~le~i~~ar~ 191 (289)
T PRK05481 121 TIRAIRELNPGT-----TIEVLIPDFRGRMDALLTVLDARP-DVFNHNLETVPRLYKRVR---PGADYERSLELLKRAKE 191 (289)
T ss_pred HHHHHHhhCCCc-----EEEEEccCCCCCHHHHHHHHhcCc-ceeeccccChHHHHHHhC---CCCCHHHHHHHHHHHHH
Confidence 77777652 233 4555443 1 1123444444432 233334445677887764 46889999999987765
Q ss_pred cCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCccc---ccchhHHHHHHHHhhCceeE
Q psy9577 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC---SKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 256 ~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~---p~~e~l~~f~~~l~~~gi~v 332 (354)
.. ..+.+..-+|=|+.+++||..+..+++++++ ...+++-||-|.....++- ..+++.+.+.++..+.|+..
T Consensus 192 ~~--pgi~~~t~~IvGfGET~ed~~~tl~~lrel~---~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~ 266 (289)
T PRK05481 192 LH--PGIPTKSGLMVGLGETDEEVLEVMDDLRAAG---VDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALELGFLH 266 (289)
T ss_pred hC--CCCeEeeeeEEECCCCHHHHHHHHHHHHhcC---CCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHHcCchh
Confidence 43 2467777777799999999999999999954 3677888888832213332 33567777888888888844
Q ss_pred E
Q psy9577 333 T 333 (354)
Q Consensus 333 ~ 333 (354)
.
T Consensus 267 ~ 267 (289)
T PRK05481 267 V 267 (289)
T ss_pred e
Confidence 3
No 79
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.93 E-value=7.9e-09 Score=104.68 Aligned_cols=184 Identities=13% Similarity=0.198 Sum_probs=123.0
Q ss_pred CCceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----c-Cc
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----M-GE 169 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----m-GE 169 (354)
++.+..+.+|.||+.+|.||..+.. |..+..++++|++++...... .+..|+|.| . |+
T Consensus 136 ~~~~~~l~isrGC~~~CsfC~~p~~~g~~~sr~~e~Iv~Ei~~l~~~---------------G~keI~l~g~~~~~yG~d 200 (440)
T PRK14334 136 GKLSAHLTIMRGCNHHCTYCIVPTTRGPEVSRHPDLILRELELLKAA---------------GVQEVTLLGQNVNSYGVD 200 (440)
T ss_pred CCeEEEEEeccCCCCCCcCCCcchhcCCCccCCHHHHHHHHHHHHHC---------------CCeEEEEEeccccccccC
Confidence 4677888999999999999988653 334567899999998754321 244566654 1 33
Q ss_pred cccccccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhcC--cceeEEeeccCcccccccceeCCCcCch
Q psy9577 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQEC--PVELAVSLHASNNNLRNKLVPISKKYPL 243 (354)
Q Consensus 170 Plln~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~l 243 (354)
+- +...+.++++.+.+ .|+ .++.+++. .+.+. ++.+.+.. -..+.+.+.+.+++..+.+ ++.++.
T Consensus 201 ~~-~~~~~~~Ll~~l~~-~~i----~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m---~R~~~~ 271 (440)
T PRK14334 201 QP-GFPSFAELLRLVGA-SGI----PRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRM---AREYRR 271 (440)
T ss_pred CC-CcCCHHHHHHHHHh-cCC----cEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHh---CCCCCH
Confidence 32 12345556665544 243 24666542 22333 33333321 2368899999999997765 577889
Q ss_pred HHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 244 KELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 244 ~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
++++++++.+.+.. ..+.+.+-+|=| ..+++++..+..+|++.++ +.++++.+|.|.++.+
T Consensus 272 ~~~~~~v~~lr~~~--~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~---~~~i~~f~ysp~pGT~ 333 (440)
T PRK14334 272 EKYLERIAEIREAL--PDVVLSTDIIVGFPGETEEDFQETLSLYDEVG---YDSAYMFIYSPRPGTP 333 (440)
T ss_pred HHHHHHHHHHHHhC--CCcEEEEeEEEECCCCCHHHHHHHHHHHHhcC---CCEeeeeEeeCCCCCh
Confidence 99999998876542 456666655555 5788999999999999854 3578888999988764
No 80
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=98.92 E-value=2.5e-09 Score=104.49 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=116.3
Q ss_pred EEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcc-ccccc----
Q psy9577 102 CISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP-LLNYK---- 175 (354)
Q Consensus 102 cvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEP-lln~~---- 175 (354)
-+..+.+|+.+|.||+.... +..+.++++||++++....+. .++.|.|.| ||+ .+.++
T Consensus 15 ~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~---------------G~~ei~l~g-G~~p~~~~~~~~~ 78 (336)
T PRK06245 15 FIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADA---------------GCTEALFTF-GEVPDESYERIKE 78 (336)
T ss_pred eeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHC---------------CCCEEEEec-CCCCccchhhhhh
Confidence 34567899999999986532 234579999999998765431 356799999 998 33422
Q ss_pred --------cccceeeeeec---cccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCch
Q psy9577 176 --------STIGALKLILS---DHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPL 243 (354)
Q Consensus 176 --------~v~~~l~~l~~---~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l 243 (354)
.+.+.++.+.+ ..|+ ...++...+.+. ++.+.+. ...+.+++.+.++...+.+-...+....
T Consensus 79 ~~~~~g~~~~~~~i~~i~~~~~~~g~-----~~~~~~~~lt~e~i~~Lk~a-g~~l~~~~et~~e~l~~~v~~~~~~~~~ 152 (336)
T PRK06245 79 QLAEMGYSSILEYLYDLCELALEEGL-----LPHTNAGILTREEMEKLKEV-NASMGLMLEQTSPRLLNTVHRGSPGKDP 152 (336)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhcCC-----CccccCCCCCHHHHHHHHHh-CCCCCCCccccchhhHHhhccCCCCCCH
Confidence 23333322221 1232 222222122222 4444332 2335566788888776544222223356
Q ss_pred HHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcccc--ceeeeeeeCCCCCCCC---cccccchhH
Q psy9577 244 KELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT--SCKINLIPFNCFPNSN---LICSKNSRI 318 (354)
Q Consensus 244 ~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~--~~~vnLIp~n~~~~~~---~~~p~~e~l 318 (354)
++.++.++...+. + +.+..-+|=|+.++.+|..+...+++.++... ...+.+.||.|.++.+ ..+++.++.
T Consensus 153 ~~~l~~i~~a~~~--G--i~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~ 228 (336)
T PRK06245 153 ELRLETIENAGKL--K--IPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEM 228 (336)
T ss_pred HHHHHHHHHHHHc--C--CceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHH
Confidence 7778888866432 2 33444455678999999988777777642111 1356678888887654 345666676
Q ss_pred HHHHHHHh
Q psy9577 319 KIFAKILM 326 (354)
Q Consensus 319 ~~f~~~l~ 326 (354)
.++....+
T Consensus 229 l~~ia~~R 236 (336)
T PRK06245 229 LRVVALAR 236 (336)
T ss_pred HHHHHHHH
Confidence 66555544
No 81
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.91 E-value=8.7e-09 Score=104.60 Aligned_cols=183 Identities=12% Similarity=0.205 Sum_probs=122.6
Q ss_pred ceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc---
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY--- 174 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~--- 174 (354)
....+..+.|||.+|.||..+.. |..|..++++|++++..... ..+..|+|.| ..-..+.
T Consensus 154 ~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~---------------~G~kei~l~~-~~~~~y~~~~ 217 (449)
T PRK14332 154 IQAFVTIMRGCNNFCTFCVVPYTRGRERSRDPKSIVREIQDLQE---------------KGIRQVTLLG-QNVNSYKEQS 217 (449)
T ss_pred ceEEEEecCCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHH---------------CCCeEEEEec-ccCCcccCCc
Confidence 45677888999999999998643 33578899999999875432 1256787776 3333221
Q ss_pred ccccceeeeeeccccccccceeEEeecc---cchhchHhhh-hcC--cceeEEeeccCcccccccceeCCCcCchHHHHH
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTS---GIIPMIDKLA-QEC--PVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~i~~l~-~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~ 248 (354)
..+.++++.+.+..|+ .++.+++. .+.+.+.+++ +.. -..+.+.+-+.+++..+++ +|.++.++..+
T Consensus 218 ~~l~~Ll~~l~~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m---~R~~t~~~~~~ 290 (449)
T PRK14332 218 TDFAGLIQMLLDETTI----ERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEM---KRSYSKEEFLD 290 (449)
T ss_pred ccHHHHHHHHhcCCCc----ceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhh---CCCCCHHHHHH
Confidence 1233444433332232 25666552 2333333333 322 1257889999999998876 57789999999
Q ss_pred HHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 249 ACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 249 ~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+++.+.+.. ..+.|.+-+|=| -+++++|.++..+|+++++ ...+++-+|.|.++.+
T Consensus 291 ~i~~lr~~~--p~i~i~td~IvGfPgET~edf~~tl~~v~~l~---~~~~~~f~ys~~~GT~ 347 (449)
T PRK14332 291 VVKEIRNIV--PDVGITTDIIVGFPNETEEEFEDTLAVVREVQ---FDMAFMFKYSEREGTM 347 (449)
T ss_pred HHHHHHHhC--CCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCC---CCEEEEEEecCCCCCh
Confidence 988776543 356676666666 4889999999999999854 3678889999988764
No 82
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.91 E-value=5.7e-09 Score=107.30 Aligned_cols=185 Identities=11% Similarity=0.186 Sum_probs=120.2
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----Cccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----GEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----GEPl 171 (354)
+....|+++.|||.+|.||..+.. |..|..++++|++++...... .+..|+|.|. |--+
T Consensus 156 ~~~a~v~isrGCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~---------------g~~ei~l~d~n~~~yG~d~ 220 (502)
T PRK14326 156 AYAAWVSISVGCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDE---------------GVLEVTLLGQNVNAYGVSF 220 (502)
T ss_pred CceEEEEEccCCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHC---------------CCceEEEEeecccccccCC
Confidence 345678899999999999998643 345778899999998754331 2345666552 2222
Q ss_pred cccccccceeeeeeccccccccceeEEeecc---cchhchHhhh-hcC--cceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPMIDKLA-QEC--PVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~i~~l~-~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.+...+.++++.+....|+ .+|.+++. .+.+.+-+++ +.. -..|.+.+-+.+++..+.+ +|.++.++
T Consensus 221 ~~~~~l~~Ll~~l~~i~~l----~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m---~R~~t~~~ 293 (502)
T PRK14326 221 GDRGAFSKLLRACGEIDGL----ERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAM---RRSYRSER 293 (502)
T ss_pred CCHHHHHHHHHHHHhcCCc----cEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhc---CCCCCHHH
Confidence 2323444555555432343 14555442 2223332333 322 2357889999999988774 57789999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++++.+.+.. ..+.+..-+|=| -+++++++.+..+|++.++ ...+.+.+|.|.++.+
T Consensus 294 ~~~~v~~lr~~~--~~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~---~~~~~~f~~sp~pGT~ 353 (502)
T PRK14326 294 FLGILEKVRAAM--PDAAITTDIIVGFPGETEEDFQATLDVVREAR---FSSAFTFQYSKRPGTP 353 (502)
T ss_pred HHHHHHHHHHhC--CCCeEEEEEEEECCCCCHHHHHHHHHHHHHcC---CCEEEEEeecCCCCCh
Confidence 999998776542 345555555555 5889999999999999843 2456777899988764
No 83
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.88 E-value=5.8e-09 Score=106.49 Aligned_cols=179 Identities=9% Similarity=0.091 Sum_probs=118.7
Q ss_pred eeEEeccccceEeeeeecCCCC--c-ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQ--G-FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKS 176 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~--g-~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~ 176 (354)
...+.++.||+.+|.||..+.. + ..|..+++.|++++......+ ..++.|.|.+ +-++.+.+.
T Consensus 197 ~~~i~tsRGCp~~C~FC~~~~~~~g~~~r~rs~e~V~~Ei~~~~~~~-------------~~~~~i~f~D-d~f~~~~~~ 262 (472)
T TIGR03471 197 YISLYTGRGCPSKCTFCLWPQTVGGHRYRTRSAESVIEEVKYALENF-------------PEVREFFFDD-DTFTDDKPR 262 (472)
T ss_pred eEEEEecCCCCCCCCCCCCCccCCCCceEeCCHHHHHHHHHHHHHhc-------------CCCcEEEEeC-CCCCCCHHH
Confidence 4567778999999999986532 2 136678999999987654422 1245677765 667777777
Q ss_pred ccceeeeeeccccccccceeEEeecc-cchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTS-GIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~-G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
+.++++.+++ .|+ +....+. .+.+. ++.+.+.+-..+.+.+.+.+++..+.+ +|..+.+++.++++...
T Consensus 263 ~~~l~~~l~~-~~i-----~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~---~K~~~~~~~~~~i~~~~ 333 (472)
T TIGR03471 263 AEEIARKLGP-LGV-----TWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNI---KKGLTVEIARRFTRDCH 333 (472)
T ss_pred HHHHHHHHhh-cCc-----eEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 8888888875 455 2323222 23343 344444444468899999999998875 56778899999888665
Q ss_pred ccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC
Q psy9577 255 TYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 308 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~ 308 (354)
+ . +..+... +|=| -.++.+++.+..+++.+++ ...+++-.+.|+++.
T Consensus 334 ~-~-Gi~v~~~--~IiGlPget~e~~~~ti~~~~~l~---~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 334 K-L-GIKVHGT--FILGLPGETRETIRKTIDFAKELN---PHTIQVSLAAPYPGT 381 (472)
T ss_pred H-C-CCeEEEE--EEEeCCCCCHHHHHHHHHHHHhcC---CCceeeeecccCCCc
Confidence 4 3 3444433 3335 4889999999999998854 233444455565553
No 84
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=98.88 E-value=1.1e-08 Score=102.99 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=119.4
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----Cccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----GEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----GEPl 171 (354)
+....+.+|.||+.+|.||..+.. |-.|..++++|++++....+ ..+..|+|+|. |.+.
T Consensus 132 ~~~~~i~isrGC~~~CsfC~ip~~~G~~rsr~~e~Vl~Ei~~l~~---------------~G~~ei~l~g~d~~~yg~d~ 196 (420)
T TIGR01578 132 PLIEIIPINQGCLGNCSYCITKHARGKLASYPPEKIVEKARQLVA---------------EGCKEIWITSQDTGAYGRDI 196 (420)
T ss_pred CcEEEEEEccCCCCCCCCCccccCCCCcccCCHHHHHHHHHHHHH---------------CCCeEEEEEeeccccccCCC
Confidence 456778899999999999998743 23577889999999875433 12567888772 2221
Q ss_pred cccccccceeeeeeccccccccceeEEeecc--c-chhchHhhhhcC-----cceeEEeeccCcccccccceeCCCcCch
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTS--G-IIPMIDKLAQEC-----PVELAVSLHASNNNLRNKLVPISKKYPL 243 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT~--G-~~p~i~~l~~~~-----~~~LaiSL~a~~~e~r~~l~p~~~~~~l 243 (354)
...+.++++.+.+..+. .++.+++. . +....+++++.+ -..|.+.+-+.+++..+.+ ++.+..
T Consensus 197 --~~~l~~Ll~~l~~i~~~----~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m---~R~~~~ 267 (420)
T TIGR01578 197 --GSRLPELLRLITEIPGE----FRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEM---KREYTV 267 (420)
T ss_pred --CcCHHHHHHHHHhCCCC----cEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhc---CCCCCH
Confidence 12244455544432221 13445432 1 111112333221 1257789999999988775 567888
Q ss_pred HHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 244 KELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 244 ~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+++.++++.+.+.. ..+.+..-+|=| -+++++++.+..+|+++++ +..+++-+|.|.++.+
T Consensus 268 ~~~~~~i~~i~~~~--~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~---~~~i~~~~~~p~pGT~ 329 (420)
T TIGR01578 268 SDFEDIVDKFRERF--PDLTLSTDIIVGFPTETDDDFEETMELLRKYR---PEKINITKFSPRPGTP 329 (420)
T ss_pred HHHHHHHHHHHHhC--CCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhC---CCEEEEEEeeCCCCCc
Confidence 99999988776442 246666655655 4999999999999999843 3568888999988765
No 85
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.87 E-value=1.5e-08 Score=102.42 Aligned_cols=185 Identities=12% Similarity=0.203 Sum_probs=119.4
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----cCccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----MGEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----mGEPl 171 (354)
+....+..|.||+.+|.||..+.. |..|..++++|++++....+. .+..|+|.| .|-.+
T Consensus 139 ~~~~~v~i~rGC~~~CsFC~ip~~~G~~rsr~~e~Iv~Ei~~l~~~---------------g~kei~l~~~n~~~yg~~~ 203 (434)
T PRK14330 139 KHHAWVTIIYGCNRFCTYCIVPYTRGREKSRPMEDILEEVEKLAKQ---------------GYREVTFLGQNVDAYGKDL 203 (434)
T ss_pred CcEEEEEcccCCCCCCCCCceECcCCCCccCCHHHHHHHHHHHHHC---------------CCcEEEEEEecccccccCC
Confidence 456678889999999999987633 335778899999998753321 244677755 23333
Q ss_pred cccccccceeeeeeccccccccceeEEeec---ccchhchHhhhhcCc---ceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILST---SGIIPMIDKLAQECP---VELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT---~G~~p~i~~l~~~~~---~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.+.+.+.++++.+.+..|+. ++.+++ ..+.+.+-+++...+ ..|.+.+-+.+++.-+.+ +|.++.++
T Consensus 204 ~~~~~l~~Ll~~~~~~~~~~----~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M---~R~~~~~~ 276 (434)
T PRK14330 204 KDGSSLAKLLEEASKIEGIE----RIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLM---NRRYTREE 276 (434)
T ss_pred CCCccHHHHHHHHHhcCCce----EEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhc---CCCCCHHH
Confidence 33344555555443323331 333332 223333333333222 258889999999888754 57788999
Q ss_pred HHHHHhhhhccCCCceeeeee-eeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEY-CMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~iey-vlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++++.+.+.. ..+.+.. .++..-++++++.++..+|++.++ ..++++-+|.|.++.+
T Consensus 277 ~~~~i~~lr~~~--~~i~i~~d~IvGfPgET~edf~~tl~fi~~~~---~~~~~~~~~sp~pGT~ 336 (434)
T PRK14330 277 YLELIEKIRSKV--PDASISSDIIVGFPTETEEDFMETVDLVEKAQ---FERLNLAIYSPREGTV 336 (434)
T ss_pred HHHHHHHHHHhC--CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcC---CCEEeeeeccCCCCCh
Confidence 999888776542 2355444 445557889999999999999843 3677888999998865
No 86
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.86 E-value=1.3e-08 Score=103.19 Aligned_cols=183 Identities=12% Similarity=0.172 Sum_probs=119.8
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc--
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY-- 174 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~-- 174 (354)
+....|.+|.||+.+|.||..+.. |..|..++++|++++....+. .+..|+|.| ..-+. |
T Consensus 146 ~~~~~i~i~rGC~~~CsfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~---------------G~~ei~l~~-~~~~~-yg~ 208 (439)
T PRK14328 146 KVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDIIAEIKELVSE---------------GYKEVTLLG-QNVNS-YGK 208 (439)
T ss_pred CcEEEEEHHhCcCCCCCCCCcccccCCcccCCHHHHHHHHHHHHHC---------------CCcEEEEec-cccCc-CCc
Confidence 456678899999999999998643 335788999999998753321 245677766 22211 1
Q ss_pred -----ccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhcC--cceeEEeeccCcccccccceeCCCcCch
Q psy9577 175 -----KSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQEC--PVELAVSLHASNNNLRNKLVPISKKYPL 243 (354)
Q Consensus 175 -----~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~l 243 (354)
..+.++++.+.+..|+ .++.+++. .+.+. ++.+.+.. -..+.+.+.+.+++..+.+ ++.++.
T Consensus 209 d~~~~~~l~~Ll~~l~~~~~~----~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M---~R~~~~ 281 (439)
T PRK14328 209 DLEEKIDFADLLRRVNEIDGL----ERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKM---NRHYTR 281 (439)
T ss_pred CCCCCcCHHHHHHHHHhcCCC----cEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhC---CCCCCH
Confidence 1234455444432232 14555442 22233 33333322 2358889999999988773 567889
Q ss_pred HHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 244 KELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 244 ~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
++++++++.+.+.. ..+.+.+-+|=| -+++++|+++..+|++.++ ...+++.+|.|.++.+
T Consensus 282 ~~~~~~i~~lr~~~--~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~---~~~~~~~~~sp~pGT~ 343 (439)
T PRK14328 282 EYYLELVEKIKSNI--PDVAITTDIIVGFPGETEEDFEETLDLVKEVR---YDSAFTFIYSKRKGTP 343 (439)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcC---CCcccceEecCCCCCh
Confidence 99999988765442 356666555555 5899999999999999843 3567888999988764
No 87
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=98.85 E-value=6.4e-09 Score=106.91 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=122.2
Q ss_pred EEeccccceEeeeeecCCCCc-ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccce
Q psy9577 102 CISTQVGCAINCIFCSTGRQG-FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 102 cvSsq~GC~~~C~fC~tg~~g-~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
-+.+..||+++|.||..+..+ -.|.-+++.|++++....+.+ .+..+.|.. .+|+.|.+.+.++
T Consensus 196 ~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~--------------gv~~~~~~D-d~f~~~~~~~~~l 260 (497)
T TIGR02026 196 VPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTH--------------GVGFFILAD-EEPTINRKKFQEF 260 (497)
T ss_pred eeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHc--------------CCCEEEEEe-cccccCHHHHHHH
Confidence 456779999999999876543 246678999999987643322 255678877 8999998888888
Q ss_pred eeeeecccc-ccccceeEEeeccc--c--hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhh
Q psy9577 181 LKLILSDHA-YGLSRRHVILSTSG--I--IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 181 l~~l~~~~g-~~~~~r~itvsT~G--~--~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
++.+.+ .| +++ +..++|.. + .+. ++.+.+.+-..+.+.+.+.+++..+.+ +|..+.+++.++++...
T Consensus 261 ~~~l~~-~~~l~i---~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~---~K~~t~~~~~~ai~~l~ 333 (497)
T TIGR02026 261 CEEIIA-RNPISV---TWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHF---RKGTTTSTNKEAIRLLR 333 (497)
T ss_pred HHHHHh-cCCCCe---EEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 888875 33 422 33444432 2 122 333333344468889999999988765 56788999999998765
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 308 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~ 308 (354)
+. |..+.. ..++.--+++.+++.+..+++..++ +..+++-.+.|+++.
T Consensus 334 ~~--Gi~~~~-~~I~G~P~et~e~~~~t~~~~~~l~---~~~~~~~~~tP~PGT 381 (497)
T TIGR02026 334 QH--NILSEA-QFITGFENETDETFEETYRQLLDWD---PDQANWLMYTPWPFT 381 (497)
T ss_pred HC--CCcEEE-EEEEECCCCCHHHHHHHHHHHHHcC---CCceEEEEecCCCCc
Confidence 43 345543 3334445899999999999998854 345566667777664
No 88
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.85 E-value=1.9e-08 Score=101.85 Aligned_cols=184 Identities=15% Similarity=0.222 Sum_probs=121.0
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc--
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY-- 174 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~-- 174 (354)
+...-+.+|.||+.+|.||..+.. |-.|..++++|++++...... .+..|+|.| ...+...
T Consensus 145 ~~~a~v~i~rGC~~~CsFC~~p~~~g~~rsr~~e~V~~Ei~~l~~~---------------g~~eI~l~d-~~~~~y~~~ 208 (437)
T PRK14331 145 KYCAYVTVMRGCDKKCTYCVVPKTRGKERSRRLGSILDEVQWLVDD---------------GVKEIHLIG-QNVTAYGKD 208 (437)
T ss_pred CcEEEEEeccCcCCCCccCCcccCCCCcccCCHHHHHHHHHHHHHC---------------CCeEEEEee-eccccccCC
Confidence 455677888999999999987643 335778999999998764331 256788877 4444321
Q ss_pred ---ccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 175 ---KSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 175 ---~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
..+.++++.+.+..|+ .++.+++. .+.+. ++.+.+. +-..+.+.+.+.+++..+.+ +|.++.++
T Consensus 209 ~~~~~~~~Ll~~l~~~~g~----~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m---~R~~t~~~ 281 (437)
T PRK14331 209 IGDVPFSELLYAVAEIDGV----ERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLM---DRGYTKEE 281 (437)
T ss_pred CCCCCHHHHHHHHhcCCCc----cEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHc---CCCCCHHH
Confidence 2344555555443343 24666552 22233 2233332 12357889999999998765 56788999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++++.+.+.. ..+.+..-+|=| ..++++++++..+|+++++ +..++..+|.|.++.+
T Consensus 282 ~~~~v~~lr~~~--~gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~---~~~i~~f~~sp~pGT~ 341 (437)
T PRK14331 282 YLEKIELLKEYI--PDITFSTDIIVGFPTETEEDFEETLDVLKKVE---FEQVFSFKYSPRPGTP 341 (437)
T ss_pred HHHHHHHHHHhC--CCCEEecCEEEECCCCCHHHHHHHHHHHHhcC---cceeeeeEecCCCCcc
Confidence 999988775442 245555444433 5788999999999999854 2466777899888764
No 89
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.84 E-value=1.5e-08 Score=102.03 Aligned_cols=186 Identities=15% Similarity=0.163 Sum_probs=122.1
Q ss_pred CCCceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc--
Q psy9577 96 KNRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-- 172 (354)
Q Consensus 96 ~~r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-- 172 (354)
..+....+..|.||+.+|.||..+.. |..|..++++|++++....+. .+..|+|.| ..-..
T Consensus 121 ~~~~~a~i~i~rGC~~~CsFC~ip~~rG~~rsrs~e~Iv~Ei~~l~~~---------------G~~ei~l~~-~~~~~yg 184 (418)
T PRK14336 121 KPPVSANVTIMQGCDNFCTYCVVPYRRGREKSRSIAEIGCEVAELVRR---------------GSREVVLLG-QNVDSYG 184 (418)
T ss_pred CCCeEEEEEeccCCCCCCccCCccccCCCCccCCHHHHHHHHHHHHHC---------------CCeEEEEEe-cCccccc
Confidence 34567788899999999999988643 445788999999998764331 245677766 33221
Q ss_pred ----ccccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcCc
Q psy9577 173 ----NYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYP 242 (354)
Q Consensus 173 ----n~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~~ 242 (354)
..+.+.++++.+.+..|+ .++.+++. .+.+. ++.+.+. +-..+.+.+.+.+++.-+.+ +|.++
T Consensus 185 ~d~~~~~~l~~Ll~~l~~~~~~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M---~R~~~ 257 (418)
T PRK14336 185 HDLPEKPCLADLLSALHDIPGL----LRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAM---RRGYT 257 (418)
T ss_pred cCCCCcccHHHHHHHHHhcCCc----cEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHh---CCCCC
Confidence 112455666655543332 15666542 22233 2223332 12357788999999888765 46788
Q ss_pred hHHHHHHHhhhhccCCCceeeeeeeec-cCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 243 LKELILACHRYITYSPRHMITFEYCML-HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 243 l~~il~~l~~~~~~~~~~~v~ieyvlI-~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
.+++.++++.+.+.. ..+.+..-+| .-.++++++.++..+|++.++ ...+++-+|.|.++.+
T Consensus 258 ~~~~~~~i~~lr~~~--pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~---~~~~~v~~ysp~pGT~ 320 (418)
T PRK14336 258 NQQYRELVERLKTAM--PDISLQTDLIVGFPSETEEQFNQSYKLMADIG---YDAIHVAAYSPRPQTV 320 (418)
T ss_pred HHHHHHHHHHHHhhC--CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcC---CCEEEeeecCCCCCCh
Confidence 899999988776543 2455554444 436789999999999999843 3567778899988764
No 90
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.84 E-value=2.4e-08 Score=102.66 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=122.9
Q ss_pred CCceeEEeccccceEeeeeecCCC-CcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-----cCcc
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGR-QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-----MGEP 170 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~-~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-----mGEP 170 (354)
++....|..|.||+..|.||..+. .|..|..++++|++++...... .+..|+|.| .|..
T Consensus 210 ~~~~a~v~I~~GC~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~---------------G~keI~L~g~n~~~yg~d 274 (509)
T PRK14327 210 GNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQ---------------GYKEITLLGQNVNAYGKD 274 (509)
T ss_pred CCeEEEEEecCCCCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHC---------------CCcEEEEEeeccccCccc
Confidence 456788999999999999999763 3345778899999998754321 134566655 2433
Q ss_pred ccc-cccccceeeeeeccccccccceeEEeeccc---chhc-hHhhhhcCc--ceeEEeeccCcccccccceeCCCcCch
Q psy9577 171 LLN-YKSTIGALKLILSDHAYGLSRRHVILSTSG---IIPM-IDKLAQECP--VELAVSLHASNNNLRNKLVPISKKYPL 243 (354)
Q Consensus 171 lln-~~~v~~~l~~l~~~~g~~~~~r~itvsT~G---~~p~-i~~l~~~~~--~~LaiSL~a~~~e~r~~l~p~~~~~~l 243 (354)
+.+ ...+.++++.+.+ .++ .++.++|+- +.+. ++.+.+... ..+.+.+-+.+++.-+.+ +++++.
T Consensus 275 ~~~~~~~l~~Ll~~I~~-~~i----~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M---~R~~t~ 346 (509)
T PRK14327 275 FEDIEYGLGDLMDEIRK-IDI----PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIM---ARKYTR 346 (509)
T ss_pred ccccchHHHHHHHHHHh-CCC----ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhc---CCCCCH
Confidence 322 1124455555554 233 256676631 2222 222333321 258899999999988664 578999
Q ss_pred HHHHHHHhhhhccCCCceeeeeeeec-cCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc
Q psy9577 244 KELILACHRYITYSPRHMITFEYCML-HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL 310 (354)
Q Consensus 244 ~~il~~l~~~~~~~~~~~v~ieyvlI-~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~ 310 (354)
++.+++++.+.+.. ..+.+..-+| .-.+++++++++..+|++.++ ...+++.+|.|.++.+.
T Consensus 347 e~~~~~v~~lr~~~--p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~---~d~~~~f~ysprpGT~a 409 (509)
T PRK14327 347 ESYLELVRKIKEAI--PNVALTTDIIVGFPNETDEQFEETLSLYREVG---FDHAYTFIYSPREGTPA 409 (509)
T ss_pred HHHHHHHHHHHHhC--CCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcC---CCeEEEeeeeCCCCCch
Confidence 99999998776543 3566654444 336788999999999999853 35677788999888653
No 91
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=98.84 E-value=1.6e-08 Score=99.55 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=124.1
Q ss_pred ccceEeeeeecCCCCcccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-cccccccceee
Q psy9577 107 VGCAINCIFCSTGRQGFVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKSTIGALK 182 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln~~~v~~~l~ 182 (354)
.-|+..|.||........+.+ .++.+++++......++ +.++..|.|.| |+|+ ++.+.+.++++
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~-----------~~~v~~iyfGG-GTPs~l~~~~l~~ll~ 75 (350)
T PRK08446 8 PFCESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFT-----------DEKIESVFIGG-GTPSTVSAKFYEPIFE 75 (350)
T ss_pred CCccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhcc-----------CCceeEEEECC-CccccCCHHHHHHHHH
Confidence 459999999986433111222 34555666553222221 13577777755 9996 67677777777
Q ss_pred eeeccccccccceeEEeecccc--hh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCC
Q psy9577 183 LILSDHAYGLSRRHVILSTSGI--IP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259 (354)
Q Consensus 183 ~l~~~~g~~~~~r~itvsT~G~--~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~ 259 (354)
.+++. +.. ...+|+++|.- .+ .++.+.+.+...+.+.+.+.+++..+.+ ++..+.+++.++++.+.+. +-
T Consensus 76 ~i~~~--~~~-~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~~~~~~ai~~lr~~-g~ 148 (350)
T PRK08446 76 IISPY--LSK-DCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQKQIIKAIENAKKA-GF 148 (350)
T ss_pred HHHHh--cCC-CceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHHHHHc-CC
Confidence 66642 110 12689998863 22 2444444444578999999999888776 5677899999999876543 22
Q ss_pred ceeeeeeee-ccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-----ccc-chhHHHHHHHHhhCce
Q psy9577 260 HMITFEYCM-LHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-----CSK-NSRIKIFAKILMNSGI 330 (354)
Q Consensus 260 ~~v~ieyvl-I~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-----~p~-~e~l~~f~~~l~~~gi 330 (354)
..|.+..++ +|| .+.+++.+..+++..++ +.++.+-++.+.++.++. .++ .+-...+.+.|.++|+
T Consensus 149 ~~v~iDli~GlPg--qt~~~~~~~l~~~~~l~---~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy 221 (350)
T PRK08446 149 ENISIDLIYDTPL--DNKKLLKEELKLAKELP---INHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF 221 (350)
T ss_pred CEEEEEeecCCCC--CCHHHHHHHHHHHHhcC---CCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC
Confidence 234333322 244 56788888888888754 467777777776665431 123 3445566777888886
No 92
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.82 E-value=2.7e-08 Score=100.21 Aligned_cols=186 Identities=9% Similarity=0.181 Sum_probs=119.4
Q ss_pred CCceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----Ccc
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----GEP 170 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----GEP 170 (354)
++....|.+|.||+.+|.||..+.. |..+..++++|++++...... .+..|+|.|. |.-
T Consensus 125 ~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~~e~I~~Ei~~l~~~---------------G~keI~l~~~~~~~yg~d 189 (420)
T PRK14339 125 SPYKSLVNISIGCDKKCTYCIVPHTRGKEISIPMDLILKEAEKAVNN---------------GAKEIFLLGQNVNNYGKR 189 (420)
T ss_pred CCeEEEEEecCCCCCCCCcCCcccccCCCCCCCHHHHHHHHHHHHHC---------------CCcEEEEeeeccccccCC
Confidence 3456788899999999999998753 234556899999998754321 2456777662 111
Q ss_pred ccc---cccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcC
Q psy9577 171 LLN---YKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKY 241 (354)
Q Consensus 171 lln---~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~ 241 (354)
+.+ ...+.++++.+.+..|+ .++.+++. .+.+. ++.+.+. +-..+.+.+-+.+++.-+.+ +|.+
T Consensus 190 ~~~~~~~~~l~~Ll~~l~~~~g~----~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M---~R~~ 262 (420)
T PRK14339 190 FSSEHEKVDFSDLLDKLSEIEGL----ERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAM---KRGY 262 (420)
T ss_pred CcCCcccccHHHHHHHHhcCCCc----cEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhc---cCCC
Confidence 110 01244555555432343 24666432 22233 3233332 12357899999999988775 5778
Q ss_pred chHHHHHHHhhhhccCCCceeeeeeeec-cCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 242 PLKELILACHRYITYSPRHMITFEYCML-HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 242 ~l~~il~~l~~~~~~~~~~~v~ieyvlI-~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++++++++.+.+.. ..+.+..-+| .-.+++++|+++..+|++.++ ..+++..+|.|.++.+
T Consensus 263 t~~~~~~~v~~lr~~~--p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~---~~~~~~f~~sp~pGT~ 326 (420)
T PRK14339 263 TKEWFLNRAEKLRALV--PEVSISTDIIVGFPGESDKDFEDTMDVLEKVR---FEQIFSFKYSPRPLTE 326 (420)
T ss_pred CHHHHHHHHHHHHHHC--CCCEEEEEEEEECCCCCHHHHHHHHHHHHhcC---CCEEeeEecCCCCCCc
Confidence 8999999888776543 2455554444 447889999999999999843 2457777899998875
No 93
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.82 E-value=2.6e-08 Score=101.02 Aligned_cols=186 Identities=14% Similarity=0.165 Sum_probs=118.1
Q ss_pred CCceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc------C-
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM------G- 168 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm------G- 168 (354)
.+....+.+|.||+.+|.||..+.. |..+..++++|++++...... .+..|+|.|. |
T Consensus 145 ~~~~~~i~isrGCp~~CsFC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~---------------g~~ei~l~d~~~~~y~~~ 209 (444)
T PRK14325 145 EGPSAFVSIMEGCDKYCTFCVVPYTRGEEVSRPVDDVLAEVAQLAEQ---------------GVREITLLGQNVNAYRGE 209 (444)
T ss_pred CCceEEEEhhhCCCCCCCccccCcccCCcccCCHHHHHHHHHHHHHC---------------CCcEEEEEeeccccccCC
Confidence 3556778889999999999998643 334567899999998754321 1345666542 1
Q ss_pred ccccccccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhcC--cceeEEeeccCcccccccceeCCCcCc
Q psy9577 169 EPLLNYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQEC--PVELAVSLHASNNNLRNKLVPISKKYP 242 (354)
Q Consensus 169 EPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~ 242 (354)
.+--+...+.++++.+.+..|+ .++.+++. .+.+. +..+.+.. -..+.+.+.+.+++.-+.+ +|.++
T Consensus 210 ~~~~~~~~l~~Ll~~l~~~~~~----~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m---~R~~~ 282 (444)
T PRK14325 210 GPDGEIADFAELLRLVAAIDGI----ERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAM---NRGHT 282 (444)
T ss_pred CCCCCcchHHHHHHHHHhcCCc----cEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhC---CCCCC
Confidence 0000112345555555442343 14555442 23333 22333321 1357889999999988764 56789
Q ss_pred hHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 243 LKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 243 l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
.+++.++++.+.+.. ..+.+..-+|=| -++++++.++..+|+++++ ...+++.+|.|.++.+
T Consensus 283 ~~~~~~~i~~lr~~~--~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~---~~~~~~~~~sp~pGT~ 345 (444)
T PRK14325 283 ALEYKSIIRKLRAAR--PDIAISSDFIVGFPGETDEDFEATMKLIEDVG---FDQSFSFIYSPRPGTP 345 (444)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEeeEEEECCCCCHHHHHHHHHHHHhcC---CCeeeeeeccCCCCCc
Confidence 999999998776442 245566544444 5889999999999999854 2456667888888764
No 94
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.82 E-value=3.4e-08 Score=100.26 Aligned_cols=185 Identities=13% Similarity=0.199 Sum_probs=122.0
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----Cccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----GEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----GEPl 171 (354)
+...++..|.||+.+|.||..+.. |..|..++++|++++...... .+..|+|.|. |-..
T Consensus 147 ~~~a~v~i~rGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~---------------G~~eI~l~~~~~~~yg~d~ 211 (446)
T PRK14337 147 PASAFVNIMQGCDNFCAYCIVPYTRGRQKSRSSAAVLDECRALVDR---------------GAREITLLGQNVNSYGQDK 211 (446)
T ss_pred CcEEEEEeccCCCCCCcCCCcccCCCCCeeCCHHHHHHHHHHHHHC---------------CCeEEEEEecCccccccCC
Confidence 567889999999999999998643 335788899999998754331 2457788762 2111
Q ss_pred c-ccccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcCchH
Q psy9577 172 L-NYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYPLK 244 (354)
Q Consensus 172 l-n~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~ 244 (354)
. +...+.++++.+.+..|+ .++.+++. .+.+. ++.+.+. +-..|.+.+-+.+++..+.+ +++++.+
T Consensus 212 ~~~~~~l~~Ll~~l~~~~g~----~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M---~R~~t~e 284 (446)
T PRK14337 212 HGDGTSFAQLLHKVAALPGL----ERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAM---GRKYDMA 284 (446)
T ss_pred CCCCccHHHHHHHHHhcCCC----cEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhC---CCCCCHH
Confidence 0 011344444444432233 14555441 22333 2223332 12358899999999988764 5778999
Q ss_pred HHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 245 ELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 245 ~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
++.++++.+.+.. ..+.+..-+|=| .+++++|+++..+|+++++ ...+++.+|.|.++.+
T Consensus 285 ~~~~~v~~lr~~~--~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~---~~~~~~f~ysp~pgT~ 345 (446)
T PRK14337 285 RYLDIVTDLRAAR--PDIALTTDLIVGFPGETEEDFEQTLEAMRTVG---FASSFSFCYSDRPGTR 345 (446)
T ss_pred HHHHHHHHHHHhC--CCCeEEEeEEEECCCCCHHHHHHHHHHHHhcC---CCeeEEEecCCCCCCc
Confidence 9999998876543 346666655655 5889999999999999854 3677778999988754
No 95
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=98.81 E-value=2.4e-08 Score=101.09 Aligned_cols=184 Identities=11% Similarity=0.184 Sum_probs=121.7
Q ss_pred CCceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc-
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY- 174 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~- 174 (354)
++....+.+|.||+.+|.||..+.. |..|..++++|++++..... ..+..|+|.|. . +..|
T Consensus 143 ~~~~~~v~i~rGC~~~CsfC~~~~~~G~~rsr~~e~I~~Ei~~l~~---------------~g~~ei~l~~~-~-~~~y~ 205 (438)
T TIGR01574 143 GIYKSFINIMIGCNKFCTYCIVPYTRGDEISRPFDDILQEVQKLAE---------------KGVREITLLGQ-N-VNAYR 205 (438)
T ss_pred CceeEEeehhcCCCCCCCCCCeeeecCCCcccCHHHHHHHHHHHHH---------------cCCeEEEEEec-c-cCCcc
Confidence 3466788999999999999997643 33577889999999875332 12456788762 1 1112
Q ss_pred --------ccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhcC--cceeEEeeccCcccccccceeCCCc
Q psy9577 175 --------KSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQEC--PVELAVSLHASNNNLRNKLVPISKK 240 (354)
Q Consensus 175 --------~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~~--~~~LaiSL~a~~~e~r~~l~p~~~~ 240 (354)
..+.++++.+.+..|+ ..+.+++. .+.+. ++.+.+.. -..+.+.+.+.+++.-+. | ++.
T Consensus 206 g~d~~~~~~~l~~Ll~~l~~~~~~----~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~-m--~R~ 278 (438)
T TIGR01574 206 GKDFEGKTMDFSDLLRELSTIDGI----ERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL-M--KRG 278 (438)
T ss_pred CCCCCCCcccHHHHHHHHHhcCCc----eEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh-c--CCC
Confidence 2345556655532343 24555442 12222 33333322 235778899999998876 3 577
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
++.++++++++.+.+.. ..+.+..-+|=|+ .++++++.+..+|+++++ ..++++.+|.|.++.+
T Consensus 279 ~t~~~~~~~v~~ir~~~--~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~---~~~~~~~~~sp~pGT~ 343 (438)
T TIGR01574 279 YTREWYLNLVRKLRAAC--PNVSISTDIIVGFPGETEEDFEETLDLLREVE---FDSAFSFIYSPRPGTP 343 (438)
T ss_pred CCHHHHHHHHHHHHHhC--CCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcC---CCeeeeEEecCCCCCc
Confidence 89999999998776442 3466665555564 788999999999999853 3567888998888765
No 96
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=98.81 E-value=2.6e-08 Score=98.67 Aligned_cols=204 Identities=14% Similarity=0.150 Sum_probs=124.4
Q ss_pred eeEEeccccceEeeeeecCCCCcccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-ccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NYK 175 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~~ 175 (354)
++.|-. .-|+..|.||..........+ .++.+++++... .. ...++.|-|.| |+|++ +.+
T Consensus 5 ~lYiHi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~---~~-----------~~~~~~i~~gG-Gtps~l~~~ 68 (374)
T PRK05799 5 SLYIHI-PFCKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNS---TK-----------NKKIKSIFIGG-GTPTYLSLE 68 (374)
T ss_pred EEEEEe-CCccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhh---cC-----------CCceeEEEECC-CcccCCCHH
Confidence 344444 459999999987543211122 255566665321 11 12466666655 99995 555
Q ss_pred cccceeeeeeccccccccceeEEeeccc--chhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 176 STIGALKLILSDHAYGLSRRHVILSTSG--IIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 176 ~v~~~l~~l~~~~g~~~~~r~itvsT~G--~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
.+..+++.++. .++. ..-.++++||. +.+. ++.+.+.....+.+.+.+.+++.++.+ ++.++.++++++++.
T Consensus 69 ~l~~L~~~i~~-~~~~-~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~~~~~~~ai~~ 143 (374)
T PRK05799 69 ALEILKETIKK-LNKK-EDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHTFEEFLENYKL 143 (374)
T ss_pred HHHHHHHHHHh-CCCC-CCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCCHHHHHHHHHH
Confidence 55555555543 2211 01268998885 3333 444444444478899999999998876 466789999999987
Q ss_pred hhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC---------cccccchhH----
Q psy9577 253 YITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN---------LICSKNSRI---- 318 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~---------~~~p~~e~l---- 318 (354)
..+.. .. .+..-+|=|+ +++.+++.+..+++..++ +.++.+-++.+.++.+ +..|+.++.
T Consensus 144 l~~~g--~~-~v~~dli~GlPgqt~e~~~~~l~~~~~l~---~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~ 217 (374)
T PRK05799 144 ARKLG--FN-NINVDLMFGLPNQTLEDWKETLEKVVELN---PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMY 217 (374)
T ss_pred HHHcC--CC-cEEEEeecCCCCCCHHHHHHHHHHHHhcC---CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHH
Confidence 65432 22 2344445454 778899999999998854 3567676777666643 334555443
Q ss_pred HHHHHHHhhCce
Q psy9577 319 KIFAKILMNSGI 330 (354)
Q Consensus 319 ~~f~~~l~~~gi 330 (354)
....+.|.++|+
T Consensus 218 ~~~~~~l~~~Gy 229 (374)
T PRK05799 218 HYTIEFLKEKGY 229 (374)
T ss_pred HHHHHHHHHcCC
Confidence 334566777775
No 97
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.79 E-value=3.8e-09 Score=92.22 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCCceeEEeccccceEeeeeecCCCCc-c--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc
Q psy9577 96 KNRNTLCISTQVGCAINCIFCSTGRQG-F--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL 172 (354)
Q Consensus 96 ~~r~tlcvSsq~GC~~~C~fC~tg~~g-~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll 172 (354)
+.+....|-+ .|||++|+||++.... . ++.++ .+.+++++....... ....+|+|+| ||||+
T Consensus 14 GpG~r~~if~-~GCnl~C~~C~n~~~~~~~~g~~~~-~~~~~~il~~~~~~~------------~~~~gvt~sG-GEPl~ 78 (154)
T PRK11121 14 GPGTRCTLFV-SGCVHQCPGCYNKSTWRLNSGHPFT-KEMEDQIIADLNDTR------------IKRQGLSLSG-GDPLH 78 (154)
T ss_pred CCCcEEEEEc-CCCCCcCcCCCChhhccCCCCcccC-HHHHHHHHHHHHHhC------------CCCCcEEEEC-CCccc
Confidence 3333333444 7999999999997531 1 23344 344455443222110 1235799999 99998
Q ss_pred c--cccccceeeeeeccc-cccccceeEEeecccchh-ch----HhhhhcCcceeEEeeccCccc
Q psy9577 173 N--YKSTIGALKLILSDH-AYGLSRRHVILSTSGIIP-MI----DKLAQECPVELAVSLHASNNN 229 (354)
Q Consensus 173 n--~~~v~~~l~~l~~~~-g~~~~~r~itvsT~G~~p-~i----~~l~~~~~~~LaiSL~a~~~e 229 (354)
+ .+.+.++++.+++.. +. .|.+ |||+.- .+ ..+++..+ +.||-+..++.
T Consensus 79 ~~~~~~l~~l~~~~k~~~~~~-----~i~~-~tGy~~eel~~~~~~~l~~~D--vlvDG~~~~~~ 135 (154)
T PRK11121 79 PQNVPDILKLVQRVKAECPGK-----DIWV-WTGYKLDELNAAQRQVVDLID--VLVDGKFVQDL 135 (154)
T ss_pred hhhHHHHHHHHHHHHHHCCCC-----CEEE-ecCCCHHHHHHHHHHHHhhCC--EEEechhhhhc
Confidence 4 477888888777531 22 5644 689852 12 12333333 56676555443
No 98
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.78 E-value=1.8e-08 Score=102.20 Aligned_cols=184 Identities=13% Similarity=0.219 Sum_probs=122.2
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----Cccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----GEPL 171 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----GEPl 171 (354)
+....+.+|.||+.+|.||..+.. |-.|..++++|++++..... ..+..|+|.|. |.+.
T Consensus 148 ~~~a~l~isrGC~~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~---------------~G~~ei~l~~~~~~~y~d~~ 212 (445)
T PRK14340 148 SISAFVPVMRGCNNMCAFCVVPFTRGRERSHPFASVLDEVRALAE---------------AGYREITLLGQNVNSYSDPE 212 (445)
T ss_pred CcEEEEEeccCCCCCCCCCCcccccCCCcCCCHHHHHHHHHHHHH---------------CCCeEEEEeecccchhhccC
Confidence 456778999999999999988632 33577889999999875432 12566777762 2222
Q ss_pred cccccccceeeeeeccccccccceeEEeecc---cchhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 LNYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 ln~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
.. ..+.++++.+.+..+ ..++.+++. .+.+. ++.+.+. +-..|.+.+-+.+++.-+.+ +|.++.++
T Consensus 213 ~~-~~l~~Ll~~l~~~~~----~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m---~R~~t~~~ 284 (445)
T PRK14340 213 AG-ADFAGLLDAVSRAAP----EMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRM---NRGHTIEE 284 (445)
T ss_pred CC-chHHHHHHHHhhcCC----CcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhc---CCCCCHHH
Confidence 11 123455555543111 115666552 23333 3333332 22358899999999888764 67889999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++++.+.+.. ..+.+..-+|=| -.+++++.++..+|+++++ ...+++-+|.|.++.+
T Consensus 285 ~~~~v~~lr~~~--pgi~i~td~IvGfPgET~edf~~tl~~~~~~~---~~~~~~f~~sp~pGT~ 344 (445)
T PRK14340 285 YLEKIALIRSAI--PGVTLSTDLIAGFCGETEEDHRATLSLMEEVR---FDSAFMFYYSVRPGTL 344 (445)
T ss_pred HHHHHHHHHHhC--CCCEEeccEEEECCCCCHHHHHHHHHHHHhcC---CCEEeeEEecCCCCCh
Confidence 999998876543 246666554544 6789999999999999853 3567778999998865
No 99
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.77 E-value=2.7e-08 Score=97.73 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=108.2
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccch-hc-hHhhhhcCcceeEEeeccCcccccccceeCC
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII-PM-IDKLAQECPVELAVSLHASNNNLRNKLVPIS 238 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~-p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~ 238 (354)
+++.||.|+++- |..+.+..+.++. ++-.-..|-.-.|+||.. +. .+++.+.....|.+|+||++++.|+++|.
T Consensus 81 ~~~~~~~~d~~c-~p~le~~~~r~~~-~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~-- 156 (414)
T COG1625 81 GAKQCGNGDTFC-YPDLEPRGRRARL-YYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK-- 156 (414)
T ss_pred ceeecCCCCccc-CcchhhhhhHHHh-hcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhc--
Confidence 789999777764 6778888877775 331111223344566654 33 55677765556899999999999999995
Q ss_pred CcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC-----Ccccc
Q psy9577 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS-----NLICS 313 (354)
Q Consensus 239 ~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~-----~~~~p 313 (354)
.-.-+++++.++.+.+. ...|.-..||+||+||- +++.+..+-|.+.+ ...+.++.+-|.|-. ..+++
T Consensus 157 -n~~A~~~le~L~~f~~~--~~~v~a~iVl~PGvNdg-e~L~kT~~dL~~~g---~~~~~~~~~~pvGlt~~n~~~i~~~ 229 (414)
T COG1625 157 -NPNAEQLLELLRRFAER--CIEVHAQIVLCPGVNDG-EELEKTLEDLEEWG---AHEVILMRVVPVGLTRYNRPGIRPP 229 (414)
T ss_pred -CCcHHHHHHHHHHHHHh--hhheeeEEEEcCCcCcH-HHHHHHHHHHHHhC---cCceeEEEeecceeeecCCCCCCCC
Confidence 22346799999998754 24788899999999997 57777777776632 122333323333322 23567
Q ss_pred cchhHHHHHHHHh----hCc-eeEE
Q psy9577 314 KNSRIKIFAKILM----NSG-IFVT 333 (354)
Q Consensus 314 ~~e~l~~f~~~l~----~~g-i~v~ 333 (354)
.+++++.|+++.+ +.| +.|+
T Consensus 230 t~~~l~~~k~i~re~~~E~~~~~V~ 254 (414)
T COG1625 230 TPHELEEFKEIVREFDRELGSIRVT 254 (414)
T ss_pred CHHHHHHHHHHHHHHHHhcCceEEe
Confidence 7888888887764 456 5554
No 100
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=98.77 E-value=5.6e-08 Score=95.96 Aligned_cols=203 Identities=12% Similarity=0.111 Sum_probs=121.4
Q ss_pred ccceEeeeeecCCCCcccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-ccccccceee
Q psy9577 107 VGCAINCIFCSTGRQGFVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NYKSTIGALK 182 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~~~v~~~l~ 182 (354)
.-|+..|.||........... -.+.+..++......+ +...+..|.|.| |+|++ +.+.+.++++
T Consensus 8 PFC~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-----------~~~~v~~i~~GG-GtPs~l~~~~l~~ll~ 75 (360)
T TIGR00539 8 PFCENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQT-----------DQEPLESIFIGG-GTPNTLSVEAFERLFE 75 (360)
T ss_pred CCCcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhc-----------CCCcccEEEeCC-CchhcCCHHHHHHHHH
Confidence 469999999986432111110 1222233332111111 123577777766 99974 5677777776
Q ss_pred eeeccccccccceeEEeecccc--hh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCC
Q psy9577 183 LILSDHAYGLSRRHVILSTSGI--IP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259 (354)
Q Consensus 183 ~l~~~~g~~~~~r~itvsT~G~--~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~ 259 (354)
.+++...+. ....++++||+- .+ .++.+.+.....+.+.+.+.+++..+.+ ++..+.++++++++...+. +
T Consensus 76 ~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~~~~~~ai~~l~~~--G 149 (360)
T TIGR00539 76 SIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSAKNIAPAIETALKS--G 149 (360)
T ss_pred HHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCHHHHHHHHHHHHHc--C
Confidence 665321111 112799999863 22 2444545444578999999999999887 4668899999999876543 2
Q ss_pred ceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-----cccchhHH----HHHHHHhhCc
Q psy9577 260 HMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-----CSKNSRIK----IFAKILMNSG 329 (354)
Q Consensus 260 ~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-----~p~~e~l~----~f~~~l~~~g 329 (354)
.. .+..-+|=|+ +.+.+++.+..+++..++ +.++.+-++.+.++.++. .|+.++.. ...+.|.++|
T Consensus 150 ~~-~v~~dli~GlPgqt~~~~~~~l~~~~~l~---~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~G 225 (360)
T TIGR00539 150 IE-NISLDLMYGLPLQTLNSLKEELKLAKELP---INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFG 225 (360)
T ss_pred CC-eEEEeccCCCCCCCHHHHHHHHHHHHccC---CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcC
Confidence 22 2333334443 567789999999988854 357777778777765432 34544433 3345577777
Q ss_pred ee
Q psy9577 330 IF 331 (354)
Q Consensus 330 i~ 331 (354)
+.
T Consensus 226 y~ 227 (360)
T TIGR00539 226 FK 227 (360)
T ss_pred Cc
Confidence 64
No 101
>PRK05660 HemN family oxidoreductase; Provisional
Probab=98.77 E-value=4.1e-08 Score=97.58 Aligned_cols=208 Identities=12% Similarity=0.184 Sum_probs=127.6
Q ss_pred eeEEeccccceEeeeeecCCCCcccccchhhh----hhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-cc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVRNLTVGE----IIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NY 174 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~E----Iv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~ 174 (354)
++.|-. .-|+..|.||..........++.++ +++++....... .+.++..|.|.| |+|++ ..
T Consensus 8 ~lYiHi-PFC~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~-----------~~~~v~ti~~GG-GtPs~l~~ 74 (378)
T PRK05660 8 SLYIHI-PWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLV-----------QGREVHSIFIGG-GTPSLFSA 74 (378)
T ss_pred EEEEEe-CCccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhc-----------cCCceeEEEeCC-CccccCCH
Confidence 344444 4599999999865332222333333 444443211111 123577787766 99997 45
Q ss_pred ccccceeeeeeccccccccceeEEeecccc-h-h-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGI-I-P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~-~-p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+.+.++++.+++..++. ....+|++||+- + + .++.+.+.....+.+++.+.+++..+.+ ++..+.++++++++
T Consensus 75 ~~l~~ll~~l~~~~~~~-~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l---~r~~~~~~~~~ai~ 150 (378)
T PRK05660 75 EAIQRLLDGVRARLPFA-PDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRL---GRIHGPDEAKRAAK 150 (378)
T ss_pred HHHHHHHHHHHHhCCCC-CCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh---CCCCCHHHHHHHHH
Confidence 77888888777532221 123799999852 2 2 2444555454579999999999999887 45678999999998
Q ss_pred hhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-----cccchhH----HHH
Q psy9577 252 RYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-----CSKNSRI----KIF 321 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-----~p~~e~l----~~f 321 (354)
...+. +.. .+..-+|-|+ ..+.+++.+..+++..++ +.++.+-++.+.++..+. .|+.++. +..
T Consensus 151 ~~~~~--G~~-~v~~dli~Glpgqt~~~~~~~l~~~~~l~---p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~ 224 (378)
T PRK05660 151 LAQGL--GLR-SFNLDLMHGLPDQSLEEALDDLRQAIALN---PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQG 224 (378)
T ss_pred HHHHc--CCC-eEEEEeecCCCCCCHHHHHHHHHHHHhcC---CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHH
Confidence 76543 222 2344445443 356788888888888754 467777777666654332 2444432 334
Q ss_pred HHHHhhCce
Q psy9577 322 AKILMNSGI 330 (354)
Q Consensus 322 ~~~l~~~gi 330 (354)
.+.|.++|+
T Consensus 225 ~~~L~~~Gy 233 (378)
T PRK05660 225 HQLLTAAGY 233 (378)
T ss_pred HHHHHHcCC
Confidence 556777785
No 102
>PRK06267 hypothetical protein; Provisional
Probab=98.76 E-value=3e-08 Score=97.60 Aligned_cols=188 Identities=14% Similarity=0.147 Sum_probs=123.5
Q ss_pred cccce--EeeeeecCCCCc------ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccc
Q psy9577 106 QVGCA--INCIFCSTGRQG------FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177 (354)
Q Consensus 106 q~GC~--~~C~fC~tg~~g------~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v 177 (354)
..+|+ .+|.||+-.... ..+.++++||++++...... | ++.+.++| |+++. .+.+
T Consensus 34 S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~------------G---v~~~~lsg-G~~~~-~~el 96 (350)
T PRK06267 34 GWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRI------------G---WKLEFISG-GYGYT-TEEI 96 (350)
T ss_pred cCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHc------------C---CCEEEEec-CCCCC-HHHH
Confidence 47999 789999754321 12457899999998654331 1 33456777 99954 4667
Q ss_pred cceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 178 IGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 178 ~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
.++++.++...+. .++++. |.... ..+.......+...+.+.+++.|.++.| ..+.++.++.++...+.
T Consensus 97 ~~i~e~I~~~~~~-----~~~~s~-G~~d~-~~~~~~~l~Gv~g~~ET~~~~~~~~i~~---~~s~ed~~~~l~~ak~a- 165 (350)
T PRK06267 97 NDIAEMIAYIQGC-----KQYLNV-GIIDF-LNINLNEIEGVVGAVETVNPKLHREICP---GKPLDKIKEMLLKAKDL- 165 (350)
T ss_pred HHHHHHHHHhhCC-----ceEeec-ccCCH-HHHhhccccCceeeeecCCHHHHHhhCC---CCCHHHHHHHHHHHHHc-
Confidence 7777777653332 456654 44432 2222221112456889999999999876 35889999999876543
Q ss_pred CCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHhh
Q psy9577 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILMN 327 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~~ 327 (354)
+.++. .-+|=|.+++.+|+.++++++++++ +..+.+.+|.|.++.++ .+++.+++.++...++-
T Consensus 166 -Gi~v~--~g~IiGlgEt~ed~~~~l~~l~~l~---~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl 232 (350)
T PRK06267 166 -GLKTG--ITIILGLGETEDDIEKLLNLIEELD---LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRL 232 (350)
T ss_pred -CCeee--eeEEEeCCCCHHHHHHHHHHHHHcC---CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 34554 3344456888999999999999854 23467778888887643 45677777777777653
No 103
>PRK12928 lipoyl synthase; Provisional
Probab=98.74 E-value=4.4e-08 Score=94.01 Aligned_cols=197 Identities=12% Similarity=0.114 Sum_probs=126.4
Q ss_pred ccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc---ccccccccccee
Q psy9577 105 TQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE---PLLNYKSTIGAL 181 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE---Plln~~~v~~~l 181 (354)
.+.||+.+|.||+... |....++++||++++..+... .++.|++.|... |-...+.+.+++
T Consensus 66 is~gC~~~C~FCa~~~-g~~~~~~~eei~~~a~~~~~~---------------G~keivitg~~~dDl~d~g~~~~~ell 129 (290)
T PRK12928 66 MGSICTRRCAFCQVDK-GRPMPLDPDEPERVAEAVAAL---------------GLRYVVLTSVARDDLPDGGAAHFVATI 129 (290)
T ss_pred ecccccCcCCCCCccC-CCCCCCCHHHHHHHHHHHHHC---------------CCCEEEEEEEeCCcccccCHHHHHHHH
Confidence 4799999999999876 445568999999887654331 256788888433 322334566667
Q ss_pred eeeeccc-cccccceeEEeecccc----hhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhcc
Q psy9577 182 KLILSDH-AYGLSRRHVILSTSGI----IPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 256 (354)
Q Consensus 182 ~~l~~~~-g~~~~~r~itvsT~G~----~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~ 256 (354)
+.+++.. ++ +|.+-|..+ ...+.++.+.....+..-+. +.++.++++. +.++.++.++.++...+.
T Consensus 130 ~~Ik~~~p~~-----~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlE-t~~~vl~~m~---r~~t~e~~le~l~~ak~~ 200 (290)
T PRK12928 130 AAIRARNPGT-----GIEVLTPDFWGGQRERLATVLAAKPDVFNHNLE-TVPRLQKAVR---RGADYQRSLDLLARAKEL 200 (290)
T ss_pred HHHHhcCCCC-----EEEEeccccccCCHHHHHHHHHcCchhhcccCc-CcHHHHHHhC---CCCCHHHHHHHHHHHHHh
Confidence 7666532 22 444434322 22345555443221222233 3477877764 458899999999876644
Q ss_pred CCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCC-----CCCcccccchhHHHHHHHHhhCcee
Q psy9577 257 SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP-----NSNLICSKNSRIKIFAKILMNSGIF 331 (354)
Q Consensus 257 ~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~-----~~~~~~p~~e~l~~f~~~l~~~gi~ 331 (354)
. ..+.+..-+|=|+.++++|..+..+++++++ ...+++-+|-+.. -..|. ++++.+.+.++..+.|+.
T Consensus 201 g--p~i~~~s~iIvG~GET~ed~~etl~~Lrel~---~d~v~i~~Yl~p~~~~~~v~~~~--~~~~f~~~~~~~~~~g~~ 273 (290)
T PRK12928 201 A--PDIPTKSGLMLGLGETEDEVIETLRDLRAVG---CDRLTIGQYLRPSLAHLPVQRYW--TPEEFEALGQIARELGFS 273 (290)
T ss_pred C--CCceecccEEEeCCCCHHHHHHHHHHHHhcC---CCEEEEEcCCCCCccCCceeecc--CHHHHHHHHHHHHHcCCc
Confidence 3 3577887888899999999999999999854 2556666774422 12344 346677788888888885
Q ss_pred EE
Q psy9577 332 VT 333 (354)
Q Consensus 332 v~ 333 (354)
..
T Consensus 274 ~~ 275 (290)
T PRK12928 274 HV 275 (290)
T ss_pred ee
Confidence 53
No 104
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.73 E-value=4e-08 Score=99.80 Aligned_cols=184 Identities=14% Similarity=0.179 Sum_probs=119.9
Q ss_pred ceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc----------
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM---------- 167 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm---------- 167 (354)
....+..|.||+.+|.||..+.. |..|..++++|++++..... ..+..|+|.|.
T Consensus 148 ~~a~i~i~~GC~~~CsFC~ip~~rG~~rsr~~e~V~~Ei~~l~~---------------~g~kei~l~~~~~~~yg~d~~ 212 (448)
T PRK14333 148 ITAWVNVIYGCNERCTYCVVPSVRGKEQSRTPEAIRAEIEELAA---------------QGYKEITLLGQNIDAYGRDLP 212 (448)
T ss_pred eeEEEEhhcCCCCCCCCCceecccCCCcccCHHHHHHHHHHHHH---------------CCCcEEEEEecccchhcCCCC
Confidence 34567889999999999987643 34567789999999875332 12445666541
Q ss_pred -Ccccc-ccccccceeeeeeccccccccceeEEeecc---cchhchHh-hhhc--CcceeEEeeccCcccccccceeCCC
Q psy9577 168 -GEPLL-NYKSTIGALKLILSDHAYGLSRRHVILSTS---GIIPMIDK-LAQE--CPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 168 -GEPll-n~~~v~~~l~~l~~~~g~~~~~r~itvsT~---G~~p~i~~-l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
+.|.. +...+.++++.+.+..|+ .++.+++. .+.+.+.+ +.+. +-..+.+.+.+.+++..+.+ ++
T Consensus 213 ~~~p~~~~~~~l~~Ll~~i~~~~~~----~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m---~R 285 (448)
T PRK14333 213 GTTPEGRHQHTLTDLLYYIHDVEGI----ERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAM---AR 285 (448)
T ss_pred CccccccccccHHHHHHHHHhcCCC----eEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhc---CC
Confidence 22322 123455555555543443 25666542 12233223 3332 11346788999999988774 57
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
.++.++.+++++.+.+.. ..+.+..-+|=| -+++++++++..+|+++++ ...+++-+|.|.++.+
T Consensus 286 ~~t~e~~~~~i~~lr~~~--p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~---~~~~~~~~~sp~pGT~ 351 (448)
T PRK14333 286 GYTHEKYRRIIDKIREYM--PDASISADAIVGFPGETEAQFENTLKLVEEIG---FDQLNTAAYSPRPGTP 351 (448)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcEEEeeEEEECCCCCHHHHHHHHHHHHHcC---CCEEeeeeeecCCCCc
Confidence 789999999988776543 346566555544 6789999999999999853 3568888999988765
No 105
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=98.73 E-value=1e-07 Score=97.71 Aligned_cols=215 Identities=12% Similarity=0.149 Sum_probs=133.2
Q ss_pred CCceeEEeccccceEeeeeecCCCCcc--cccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGRQGF--VRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~~g~--~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl 171 (354)
...++.|.. ..|+.+|.||....... .+.+ -.+.+++++......+... +.++..|.|.| |+|+
T Consensus 162 ~~~sLYihI-PFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~---------~~~v~tIyfGG-GTPt 230 (488)
T PRK08207 162 NEVSIYIGI-PFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEK---------GLKITTIYFGG-GTPT 230 (488)
T ss_pred CceEEEEec-CCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhccc---------CCceeEEEEeC-CCcc
Confidence 446677776 68999999998653211 1222 1344455554433322211 23677888866 9998
Q ss_pred c-ccccccceeeeeeccc-cccccceeEEeec-c--cchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 172 L-NYKSTIGALKLILSDH-AYGLSRRHVILST-S--GIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 172 l-n~~~v~~~l~~l~~~~-g~~~~~r~itvsT-~--G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
+ +.+.+.++++.+.+.. ++. ..+.+|++. + .+.+. ++.+.+.....+.+.+.+.+++..+.+ ++.++.++
T Consensus 231 ~L~~~~L~~Ll~~i~~~f~~~~-~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i---gR~ht~e~ 306 (488)
T PRK08207 231 SLTAEELERLLEEIYENFPDVK-NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAI---GRHHTVED 306 (488)
T ss_pred CCCHHHHHHHHHHHHHhccccC-CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHh---CCCCCHHH
Confidence 4 6677777777776422 211 123567754 1 23333 444444444578999999999999876 56789999
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC-------cccccchh
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN-------LICSKNSR 317 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~-------~~~p~~e~ 317 (354)
+.++++...+. +.. .|..-+|-|+ +++.+++.+..+++..++ +.++.+-++.+.+++. +..|+.++
T Consensus 307 v~~ai~~ar~~--Gf~-~In~DLI~GLPgEt~ed~~~tl~~l~~L~---pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~ 380 (488)
T PRK08207 307 IIEKFHLAREM--GFD-NINMDLIIGLPGEGLEEVKHTLEEIEKLN---PESLTVHTLAIKRASRLTENKEKYKVADREE 380 (488)
T ss_pred HHHHHHHHHhC--CCC-eEEEEEEeCCCCCCHHHHHHHHHHHHhcC---cCEEEEEeceEcCCChHHHhcCcCCCcCHHH
Confidence 99999876543 221 4555566664 778899999999998854 3566666666655543 34566555
Q ss_pred HH----HHHHHHhhCceeE
Q psy9577 318 IK----IFAKILMNSGIFV 332 (354)
Q Consensus 318 l~----~f~~~l~~~gi~v 332 (354)
.. ...+.|+++|+.-
T Consensus 381 ~~~m~~~a~~~l~~~Gy~~ 399 (488)
T PRK08207 381 IEKMMEEAEEWAKELGYVP 399 (488)
T ss_pred HHHHHHHHHHHHHHcCCHh
Confidence 43 4445566777643
No 106
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=98.72 E-value=9.2e-08 Score=92.34 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=126.8
Q ss_pred eeeeecCCCCcccc---cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-cccccccceeeeeecc
Q psy9577 112 NCIFCSTGRQGFVR---NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKSTIGALKLILSD 187 (354)
Q Consensus 112 ~C~fC~tg~~g~~r---~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln~~~v~~~l~~l~~~ 187 (354)
+|.||.....+..+ ..+.++|.+|+.....++... . ..+++.|.|.|+ +..+.+.+.++.+.+.
T Consensus 39 gC~FC~~~~~~~~~~~~~~~~~~i~~qi~~~~~~~~~~-----------~-~~~iyf~ggt~t~l~~~~L~~l~~~i~~~ 106 (302)
T TIGR01212 39 GCTFCNDASRPIFADEYTQARIPIKEQIKKQMKKYKKD-----------K-KFIAYFQAYTNTYAPVEVLKEMYEQALSY 106 (302)
T ss_pred CcccCCCCCCccccccccccCCCHHHHHHHHHHHhhcc-----------C-EEEEEEECCCcCCCCHHHHHHHHHHHhCC
Confidence 79999765433222 235678888888777766421 1 234666779999 4556777777766642
Q ss_pred ccccccceeEEeeccc--chhc-hHhhhhc---Cc-ceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCc
Q psy9577 188 HAYGLSRRHVILSTSG--IIPM-IDKLAQE---CP-VELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRH 260 (354)
Q Consensus 188 ~g~~~~~r~itvsT~G--~~p~-i~~l~~~---~~-~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~ 260 (354)
... ..+++.|.- +.+. ++.|.+. .- ..|.+-+.+.+++..+.+ ++.++.+++.++++...+. +.
T Consensus 107 ~~~----~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i---~Rg~t~~~~~~ai~~l~~~--gi 177 (302)
T TIGR01212 107 DDV----VGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI---NRGHDFACYVDAVKRARKR--GI 177 (302)
T ss_pred CCE----EEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH---cCcChHHHHHHHHHHHHHc--CC
Confidence 121 257776631 2222 2222221 22 357788999999998876 5678899999999877543 33
Q ss_pred eeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC---------Ccccccchh-HHHHHHHHhhCc
Q psy9577 261 MITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---------NLICSKNSR-IKIFAKILMNSG 329 (354)
Q Consensus 261 ~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~---------~~~~p~~e~-l~~f~~~l~~~g 329 (354)
. +..-+|-|+ .++.+++.+.++++..++ +..|.+.|+++.++. .|.+++.++ ++.....++...
T Consensus 178 ~--v~~~lI~GlPget~e~~~~t~~~l~~l~---~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~ 252 (302)
T TIGR01212 178 K--VCSHVILGLPGEDREEMMETAKIVSLLD---VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLP 252 (302)
T ss_pred E--EEEeEEECCCCCCHHHHHHHHHHHHhcC---CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 4 444555554 899999999999999853 356777888888764 356666666 555566666555
Q ss_pred eeEEE
Q psy9577 330 IFVTI 334 (354)
Q Consensus 330 i~v~i 334 (354)
..+.|
T Consensus 253 ~~~~i 257 (302)
T TIGR01212 253 PEVVI 257 (302)
T ss_pred cCeEE
Confidence 44443
No 107
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.71 E-value=6.8e-08 Score=98.62 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=118.2
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----C---
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----G--- 168 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----G--- 168 (354)
+....+.+|.|||.+|.||..+.. |..|..++++|++++...... .+..|+|.|. |
T Consensus 167 ~~~a~i~isrGCp~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~---------------g~~eI~l~~~~~~~y~~d~ 231 (467)
T PRK14329 167 GVSAFVSIMRGCDNMCTFCVVPFTRGRERSRDPESILNEVRDLFAK---------------GYKEVTLLGQNVDSYLWYG 231 (467)
T ss_pred CcEEEEEeccCcccCCCCCccccccCCcccCCHHHHHHHHHHHHHC---------------CCeEEEEEeeccccccccc
Confidence 456788889999999999987643 335788999999998754331 2445666652 1
Q ss_pred ccc--cccccccceeeeeeccc-cccccceeEEeecc---cchhchHh-hhhc--CcceeEEeeccCcccccccceeCCC
Q psy9577 169 EPL--LNYKSTIGALKLILSDH-AYGLSRRHVILSTS---GIIPMIDK-LAQE--CPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 169 EPl--ln~~~v~~~l~~l~~~~-g~~~~~r~itvsT~---G~~p~i~~-l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
+.. .+...+.++++.+.+.. ++ ++.+++. .+.+.+-+ +.+. +-..|.+.+-+.+++..+.+ +|
T Consensus 232 ~~~~~~~~~~l~~Ll~~l~~~~~~~-----~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m---~R 303 (467)
T PRK14329 232 GGLKKDEAVNFAQLLEMVAEAVPDM-----RIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLM---NR 303 (467)
T ss_pred CCccccccccHHHHHHHHHhcCCCc-----EEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhc---CC
Confidence 100 00123444555444311 22 5666542 23333323 3332 22368899999999888765 57
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeee-ccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCM-LHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvl-I~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+++.++++++++.+.+.. ..+.+..-+ +.--+++++++++..+|+++++ ...+++-+|.|.++.+
T Consensus 304 ~~t~~~~~~~i~~ir~~~--~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~---~~~~~v~~~sp~pGT~ 369 (467)
T PRK14329 304 KYTREWYLDRIDAIRRII--PDCGISTDMIAGFPTETEEDHQDTLSLMEEVG---YDFAFMFKYSERPGTY 369 (467)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhC---CCeEeeeEecCCCCCh
Confidence 888888888888765442 234444444 4447889999999999999853 3567788999988764
No 108
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=98.70 E-value=1.2e-07 Score=96.57 Aligned_cols=210 Identities=10% Similarity=0.112 Sum_probs=127.5
Q ss_pred eeEEeccccceEeeeeecCCCCc-ccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-cc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQG-FVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NY 174 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g-~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~ 174 (354)
++.|-. .-|+..|.||...... ..+.. .++.+++++......+. .+..++.|.|.| |+|++ +.
T Consensus 51 ~LYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~----------~~~~v~~i~~gG-GtPs~l~~ 118 (453)
T PRK09249 51 SLYVHI-PFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLG----------PGRPVSQLHWGG-GTPTFLSP 118 (453)
T ss_pred EEEEEe-CCccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhC----------CCCceEEEEECC-cccccCCH
Confidence 344443 5699999999764321 11122 23455666553322221 023578888877 99995 67
Q ss_pred ccccceeeeeeccccccccceeEEeecccc--hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGI--IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~--~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+.+.++++.+++..++. ....++++|++- .+. ++.+.+.+-..|.+++.+.+++.++.+ ++..+.++++++++
T Consensus 119 ~~l~~ll~~l~~~~~~~-~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l---~r~~~~~~~~~ai~ 194 (453)
T PRK09249 119 EQLRRLMALLREHFNFA-PDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAV---NRIQPFEFTFALVE 194 (453)
T ss_pred HHHHHHHHHHHHhCCCC-CCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh---CCCCCHHHHHHHHH
Confidence 88888888887632221 123789999863 233 444444444578999999999998876 45678899999988
Q ss_pred hhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC--------CcccccchhHH---
Q psy9577 252 RYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS--------NLICSKNSRIK--- 319 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~--------~~~~p~~e~l~--- 319 (354)
...+.. -..| .+-+|=| -+++.+++.+..+++..++ +.++.+.++...+.. +...|+.++..
T Consensus 195 ~l~~~G-~~~v--~~dli~GlPgqt~e~~~~~l~~~~~l~---~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 268 (453)
T PRK09249 195 AARELG-FTSI--NIDLIYGLPKQTPESFARTLEKVLELR---PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAIL 268 (453)
T ss_pred HHHHcC-CCcE--EEEEEccCCCCCHHHHHHHHHHHHhcC---CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHH
Confidence 765432 1133 3333333 4567789999999988754 356666665522211 12335555533
Q ss_pred -HHHHHHhhCcee
Q psy9577 320 -IFAKILMNSGIF 331 (354)
Q Consensus 320 -~f~~~l~~~gi~ 331 (354)
...+.|.++|+.
T Consensus 269 ~~~~~~L~~~Gy~ 281 (453)
T PRK09249 269 QQTIETLTEAGYQ 281 (453)
T ss_pred HHHHHHHHHCCCE
Confidence 445567778863
No 109
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=98.67 E-value=1.1e-07 Score=96.75 Aligned_cols=210 Identities=12% Similarity=0.172 Sum_probs=127.5
Q ss_pred eeEEeccccceEeeeeecCCCCc-ccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-cc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQG-FVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NY 174 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g-~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~ 174 (354)
++.|-. .-|+..|.||...... ..... .++.+++++......+. ++..+..|.|.| |+|++ +.
T Consensus 51 ~lYiHi-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~----------~~~~v~~I~fgG-GtP~~l~~ 118 (455)
T TIGR00538 51 SLYVHI-PFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFD----------GNRHVSQLHWGG-GTPTYLSP 118 (455)
T ss_pred EEEEEe-CCccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcC----------CCCceEEEEECC-CCcCCCCH
Confidence 444443 5699999999875421 11122 25666777654433321 123688888877 99985 77
Q ss_pred ccccceeeeeeccccccccceeEEeecccc--hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGI--IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~--~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+.+.++++.+++...+. ....++++|++. .+. ++.+.+.+-..|.|.+.+.+++..+.+ ++..+.++++++++
T Consensus 119 ~~l~~ll~~i~~~~~~~-~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l---~r~~~~~~~~~ai~ 194 (455)
T TIGR00538 119 EQISRLMKLIRENFPFN-ADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAV---NRIQPEEMIFELMN 194 (455)
T ss_pred HHHHHHHHHHHHhCCCC-CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh---CCCCCHHHHHHHHH
Confidence 88888888887632211 112688988863 232 444444444578899999999999876 45678899999988
Q ss_pred hhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC--------CCcccccchhHH---
Q psy9577 252 RYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN--------SNLICSKNSRIK--- 319 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~--------~~~~~p~~e~l~--- 319 (354)
.+.+. +.. .+.+-+|-| -.++.+++.+..+++..++ +.++.+-++...+. .....|+.++..
T Consensus 195 ~l~~~--G~~-~v~~dli~GlPgqt~e~~~~tl~~~~~l~---~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~ 268 (455)
T TIGR00538 195 HAREA--GFT-SINIDLIYGLPKQTKESFAKTLEKVAELN---PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDIL 268 (455)
T ss_pred HHHhc--CCC-cEEEeEEeeCCCCCHHHHHHHHHHHHhcC---CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHH
Confidence 76543 222 133333333 3467889999999998854 34455555522221 122345544433
Q ss_pred -HHHHHHhhCcee
Q psy9577 320 -IFAKILMNSGIF 331 (354)
Q Consensus 320 -~f~~~l~~~gi~ 331 (354)
.+.+.|.+.|+.
T Consensus 269 ~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 269 QETIAFLTEAGYQ 281 (455)
T ss_pred HHHHHHHHHCCCE
Confidence 344556677763
No 110
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=7.6e-08 Score=96.65 Aligned_cols=187 Identities=15% Similarity=0.257 Sum_probs=130.7
Q ss_pred CCCceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc-----Cc
Q psy9577 96 KNRNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM-----GE 169 (354)
Q Consensus 96 ~~r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm-----GE 169 (354)
.++...-|+.|.||+-.|+||..+.. |-.+..++++|++|+..... ..+..|++.|. |-
T Consensus 141 ~~~~~A~v~I~eGCn~~CtfCiiP~~RG~~rSr~~e~Il~ev~~Lv~---------------~G~kEI~L~gqdv~aYG~ 205 (437)
T COG0621 141 EGGVRAFVKIQEGCNKFCTFCIIPYARGKERSRPPEDILKEVKRLVA---------------QGVKEIVLTGQDVNAYGK 205 (437)
T ss_pred CCCeEEEEEhhcCcCCCCCeeeeeccCCCccCCCHHHHHHHHHHHHH---------------CCCeEEEEEEEehhhccc
Confidence 45688889999999999999998743 44677889999999976433 12566777764 54
Q ss_pred cccc-cccccceeeeeeccccccccceeEEeecccchhchHhhhh---c---CcceeEEeeccCcccccccceeCCCcCc
Q psy9577 170 PLLN-YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQ---E---CPVELAVSLHASNNNLRNKLVPISKKYP 242 (354)
Q Consensus 170 Plln-~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~---~---~~~~LaiSL~a~~~e~r~~l~p~~~~~~ 242 (354)
-+-. ...+.++|+.+.+..|+ .+|.++|.=-.+..++|++ + +--.|-+++-+.++..=+.+ +|+|.
T Consensus 206 D~~~~~~~l~~Ll~~l~~I~G~----~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M---~R~yt 278 (437)
T COG0621 206 DLGGGKPNLADLLRELSKIPGI----ERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRM---KRGYT 278 (437)
T ss_pred cCCCCccCHHHHHHHHhcCCCc----eEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHh---CCCcC
Confidence 4421 23455666666655554 2888877522221222322 2 11236677888887776543 57899
Q ss_pred hHHHHHHHhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 243 LKELILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 243 l~~il~~l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
-++.++.++++.+.. ..+.|..-+|=|+ ..++||.++..+|+++.+ ..+++.-+|.|-++.+
T Consensus 279 ~e~~~~~i~k~R~~~--Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~---fd~~~~F~YSpRpGTp 341 (437)
T COG0621 279 VEEYLEIIEKLRAAR--PDIAISTDIIVGFPGETEEDFEETLDLVEEVR---FDRLHVFKYSPRPGTP 341 (437)
T ss_pred HHHHHHHHHHHHHhC--CCceEeccEEEECCCCCHHHHHHHHHHHHHhC---CCEEeeeecCCCCCCc
Confidence 999999998886554 5788887777664 677899999999999843 4789999999987754
No 111
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.66 E-value=1.6e-07 Score=95.52 Aligned_cols=184 Identities=15% Similarity=0.175 Sum_probs=118.8
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc---
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN--- 173 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln--- 173 (354)
+....+..|.|||.+|.||..+.. |..+..++++|++++..... ..+..|+|.| ......
T Consensus 151 ~~~~~i~I~rGC~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~---------------~G~~ei~l~g-~~~~~y~~~ 214 (455)
T PRK14335 151 SFQSFIPIMNGCNNFCSYCIVPYVRGREISRDLDAILQEIDVLSE---------------KGVREITLLG-QNVNSYRGR 214 (455)
T ss_pred CceEEEEhhcCCCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHH---------------CCCeEEEEEe-ecccccccc
Confidence 345667788999999999997643 33466789999999875332 1245677777 222211
Q ss_pred -----cccccceeeeee----ccccccccceeEEeeccc---chhc-hHhhhhc--CcceeEEeeccCcccccccceeCC
Q psy9577 174 -----YKSTIGALKLIL----SDHAYGLSRRHVILSTSG---IIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPIS 238 (354)
Q Consensus 174 -----~~~v~~~l~~l~----~~~g~~~~~r~itvsT~G---~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~ 238 (354)
...+.++++.+. ...++ ..+++++.- +.+. ++.+.+. +-..+.+.+.+.+++.-+.+ +
T Consensus 215 ~~~~~~~~~~~Ll~~l~~~~~~~~~i----~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m---~ 287 (455)
T PRK14335 215 DREGNIVTFPQLLRHIVRRAEVTDQI----RWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRM---N 287 (455)
T ss_pred cccCCccCHHHHHHHHHHhhcccCCc----eEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHc---C
Confidence 012344444442 11222 245554432 2222 3333332 22357889999999888763 5
Q ss_pred CcCchHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 239 ~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+.++.++++++++.+.+.. ..+.+..-+|=| .+++++++++..+|++.++ ...+++-+|.|.++.+
T Consensus 288 R~~t~e~~~~~v~~ir~~~--pgi~i~~d~IvGfPgET~edf~~Tl~~i~~l~---~~~~~~~~~sp~pGT~ 354 (455)
T PRK14335 288 RSYTREHYLSLVGKLKASI--PNVALSTDILIGFPGETEEDFEQTLDLMREVE---FDSAFMYHYNPREGTP 354 (455)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCEEEEEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEEecCCCCCc
Confidence 7899999999998876543 245666444444 6899999999999999853 3668888999998864
No 112
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=98.65 E-value=2.1e-07 Score=94.02 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=128.9
Q ss_pred ceeEEeccccceEeeeeecCCCC-cccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-c
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ-GFVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-N 173 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~-g~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n 173 (354)
.++.|-. .-|+..|.||..... +..... -++.+++++......+. +..+..|.|.| |+|++ +
T Consensus 40 ~~lYvHI-PFC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~-----------~~~i~~i~~GG-GTPs~l~ 106 (430)
T PRK08208 40 LSLYIHI-PFCEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALA-----------PARFASFAVGG-GTPTLLN 106 (430)
T ss_pred eEEEEEe-CCccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcC-----------CCceeEEEEcC-CccccCC
Confidence 3455554 569999999986432 211111 23555555543222211 23577777755 99986 5
Q ss_pred cccccceeeeeeccccccccceeEEeeccc--chhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHH
Q psy9577 174 YKSTIGALKLILSDHAYGLSRRHVILSTSG--IIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILAC 250 (354)
Q Consensus 174 ~~~v~~~l~~l~~~~g~~~~~r~itvsT~G--~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l 250 (354)
.+.+.++++.+++..++......++++|+. +.+. ++.+.+.....|.+.+.+.+++..+.+ ++..+.+++.+++
T Consensus 107 ~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~~~~~~~~ai 183 (430)
T PRK08208 107 AAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQKRADVHQAL 183 (430)
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCCCHHHHHHHH
Confidence 667777777776432221112368888885 3233 444444444578999999999888775 4667889999999
Q ss_pred hhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc---cccchh----HHHHH
Q psy9577 251 HRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI---CSKNSR----IKIFA 322 (354)
Q Consensus 251 ~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~---~p~~e~----l~~f~ 322 (354)
+.+.+. +..+ +..-+|=| -+++.+++.+..+++..++ +.++.+.|+.+.++.++. .++.++ .+...
T Consensus 184 ~~l~~~--g~~~-i~~dlI~GlP~qt~e~~~~~l~~~~~l~---~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~ 257 (430)
T PRK08208 184 EWIRAA--GFPI-LNIDLIYGIPGQTHASWMESLDQALVYR---PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLAR 257 (430)
T ss_pred HHHHHc--CCCe-EEEEeecCCCCCCHHHHHHHHHHHHhCC---CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHH
Confidence 876543 2222 33334444 6778899999999988854 467777888777665432 233333 33455
Q ss_pred HHHhhCcee
Q psy9577 323 KILMNSGIF 331 (354)
Q Consensus 323 ~~l~~~gi~ 331 (354)
+.|.++|+.
T Consensus 258 ~~L~~~Gy~ 266 (430)
T PRK08208 258 DLLLEAGYT 266 (430)
T ss_pred HHHHHcCCe
Confidence 667777863
No 113
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.65 E-value=7.6e-08 Score=94.78 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=119.2
Q ss_pred EeccccceEeeeeecCCCCcc---cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-ccccccc
Q psy9577 103 ISTQVGCAINCIFCSTGRQGF---VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKSTI 178 (354)
Q Consensus 103 vSsq~GC~~~C~fC~tg~~g~---~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln~~~v~ 178 (354)
++...+|+.+|.||+-....- ...++++||++++..+.. ..++.|.+.| |+.. +.++.+.
T Consensus 52 in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~---------------~G~~~v~l~~-G~~p~~~~~~~~ 115 (351)
T TIGR03700 52 LNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYA---------------PGATEVHIVG-GLHPNLPFEWYL 115 (351)
T ss_pred cccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHH---------------CCCcEEEEec-CCCCCCCHHHHH
Confidence 345689999999998653211 113799999998765432 1356788887 7655 3346788
Q ss_pred ceeeeeeccc-cccccceeEEee----------cccchh-c-hHhhhhcCcceeE-EeeccCcccccccceeCCCcCchH
Q psy9577 179 GALKLILSDH-AYGLSRRHVILS----------TSGIIP-M-IDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLK 244 (354)
Q Consensus 179 ~~l~~l~~~~-g~~~~~r~itvs----------T~G~~p-~-i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~ 244 (354)
++++.+++.. ++ ++..- +.|... . +++|.+.+...+. ..+.+.+++.|+++.|. +.+.+
T Consensus 116 e~i~~Ik~~~p~i-----~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~--~~~~~ 188 (351)
T TIGR03700 116 DMIRTLKEAYPDL-----HVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPE--KISAE 188 (351)
T ss_pred HHHHHHHHHCCCc-----eEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCC--CCCHH
Confidence 8899888632 23 33321 245533 2 5566655432333 35667788899988763 45678
Q ss_pred HHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC------CCCCCCcccccchhH
Q psy9577 245 ELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN------CFPNSNLICSKNSRI 318 (354)
Q Consensus 245 ~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n------~~~~~~~~~p~~e~l 318 (354)
+.++.++...+. | +.+...+|=|.-++++|..+....+++++.....-..+||+| |+.+..+.+++..+.
T Consensus 189 ~~l~~i~~a~~~--G--i~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~ 264 (351)
T TIGR03700 189 RWLEIHRTAHEL--G--LKTNATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDD 264 (351)
T ss_pred HHHHHHHHHHHc--C--CCcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHH
Confidence 888888876543 3 444555566788888888888888887432111223556665 222222245566555
Q ss_pred HHHHHHH
Q psy9577 319 KIFAKIL 325 (354)
Q Consensus 319 ~~f~~~l 325 (354)
.+.....
T Consensus 265 lr~iA~~ 271 (351)
T TIGR03700 265 LKTLAVS 271 (351)
T ss_pred HHHHHHH
Confidence 5555444
No 114
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=98.64 E-value=1.7e-07 Score=93.06 Aligned_cols=207 Identities=10% Similarity=0.106 Sum_probs=122.5
Q ss_pred ccceEeeeeecCCCCcccc---cchhhhhhhheehhhhhhhhhcCcccCCc-CceeEEeeeeeccCccc-ccccccccee
Q psy9577 107 VGCAINCIFCSTGRQGFVR---NLTVGEIIGQLWVTEFKLRREKNIKINSQ-GKRQITNIVMMGMGEPL-LNYKSTIGAL 181 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r---~lt~~EIv~qv~~~~~~~~~~~~~~~~~~-gg~~i~~Vvf~GmGEPl-ln~~~v~~~l 181 (354)
.-|+..|.||.-......+ .-+.++.++.+.+..+.+... -+ ++..++.|.|.| |.|+ ++.+.+.+++
T Consensus 10 PFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~------~~~~~~~i~~i~~GG-GTPs~l~~~~l~~ll 82 (375)
T PRK05628 10 PFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAV------LGDPAPPVSTVFVGG-GTPSLLGAEGLARVL 82 (375)
T ss_pred CCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHh------hccCCCceeEEEeCC-CccccCCHHHHHHHH
Confidence 4699999999864321111 123333444433322222111 00 124577777755 9998 4667777777
Q ss_pred eeeeccccccccceeEEeeccc--chh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCC
Q psy9577 182 KLILSDHAYGLSRRHVILSTSG--IIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258 (354)
Q Consensus 182 ~~l~~~~g~~~~~r~itvsT~G--~~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~ 258 (354)
+.+++..++.. ...+|++++. +.+ .++.+.+..-..+.+.+.+.+++..+.+ ++.++.++++++++.+.+..
T Consensus 83 ~~i~~~~~~~~-~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~s~~~~~~a~~~l~~~g- 157 (375)
T PRK05628 83 DAVRDTFGLAP-GAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL---DRTHTPGRAVAAAREARAAG- 157 (375)
T ss_pred HHHHHhCCCCC-CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHHHHHcC-
Confidence 77775333321 1257887764 222 2444444444578999999999998875 56788999999998765432
Q ss_pred Cceeeeeeee-ccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC---------cccccchhHH----HHHHH
Q psy9577 259 RHMITFEYCM-LHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN---------LICSKNSRIK----IFAKI 324 (354)
Q Consensus 259 ~~~v~ieyvl-I~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~---------~~~p~~e~l~----~f~~~ 324 (354)
-..|.+..++ +|| .+.+++.+..+++..++ +.++.+-++.+.++.+ +..|+.+... ...+.
T Consensus 158 ~~~v~~dli~GlPg--qt~~~~~~tl~~~~~l~---~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (375)
T PRK05628 158 FEHVNLDLIYGTPG--ESDDDWRASLDAALEAG---VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADAR 232 (375)
T ss_pred CCcEEEEEeccCCC--CCHHHHHHHHHHHHhcC---CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHH
Confidence 2225544433 354 56688999999988754 3667777777665543 3345544433 34455
Q ss_pred HhhCce
Q psy9577 325 LMNSGI 330 (354)
Q Consensus 325 l~~~gi 330 (354)
|++.|.
T Consensus 233 l~~~G~ 238 (375)
T PRK05628 233 LSAAGF 238 (375)
T ss_pred HHHcCC
Confidence 666775
No 115
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=98.62 E-value=2.3e-07 Score=92.14 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=128.0
Q ss_pred eEEeccccceEeeeeecCCCCcc-c--ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-ccccc
Q psy9577 101 LCISTQVGCAINCIFCSTGRQGF-V--RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKS 176 (354)
Q Consensus 101 lcvSsq~GC~~~C~fC~tg~~g~-~--r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln~~~ 176 (354)
+.|-. .-|+..|.||.-..... . ..-.++.+++++..... . +...++.|.|.| |+|+ ++.+.
T Consensus 4 lYihi-PfC~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~-~-----------~~~~i~~i~~gG-Gtpt~l~~~~ 69 (377)
T PRK08599 4 AYIHI-PFCEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAI-R-----------PFDKLKTIYIGG-GTPTALSAEQ 69 (377)
T ss_pred EEEEe-CCcCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhh-c-----------CCCceeEEEeCC-CCcccCCHHH
Confidence 34444 34999999998543211 1 11235667777633221 1 123577777755 9998 47788
Q ss_pred ccceeeeeeccccccccceeEEeeccc--chhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTSG--IIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~G--~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~ 253 (354)
+.++++.+++..++. +...++++++. +.+. ++.+.+.....+.+.+.+.+++.++.+ ++.++.+++.++++..
T Consensus 70 l~~ll~~i~~~~~~~-~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l---~r~~~~~~~~~~i~~l 145 (377)
T PRK08599 70 LERLLTAIHRNLPLS-GLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKI---GRTHNEEDVYEAIANA 145 (377)
T ss_pred HHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHHH
Confidence 888888887632321 11268888875 2233 444444444578999999999999876 4678899999999877
Q ss_pred hccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC---------cccccchh----HH
Q psy9577 254 ITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN---------LICSKNSR----IK 319 (354)
Q Consensus 254 ~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~---------~~~p~~e~----l~ 319 (354)
.+.. -..|. .-+|=| -+++.+++.+..+++.+++ +.++.+-|+.+.++.. +..|+.+. .+
T Consensus 146 ~~~g-~~~v~--~dli~GlPgqt~~~~~~~l~~~~~l~---~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~ 219 (377)
T PRK08599 146 KKAG-FDNIS--IDLIYALPGQTIEDFKESLAKALALD---IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYE 219 (377)
T ss_pred HHcC-CCcEE--EeeecCCCCCCHHHHHHHHHHHHccC---CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHH
Confidence 5442 11233 333333 4778899999999998854 2455555655555533 22344433 23
Q ss_pred HHHHHHhhCcee
Q psy9577 320 IFAKILMNSGIF 331 (354)
Q Consensus 320 ~f~~~l~~~gi~ 331 (354)
.+.+.|.++|+.
T Consensus 220 ~~~~~l~~~Gy~ 231 (377)
T PRK08599 220 YLMDEMEAHGFH 231 (377)
T ss_pred HHHHHHHHcCCc
Confidence 455667778863
No 116
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=98.61 E-value=5.3e-07 Score=91.78 Aligned_cols=212 Identities=13% Similarity=0.182 Sum_probs=128.1
Q ss_pred CceeEEeccccceEeeeeecCCCCc-ccccch---hhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-c
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQG-FVRNLT---VGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-L 172 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~g-~~r~lt---~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-l 172 (354)
..++.|-. .-|+..|.||...... ...... .+.+++++......+. .+..+..|.|.| |+|+ +
T Consensus 50 ~~~LYvHI-PfC~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~----------~~~~v~~i~fgG-GTPs~l 117 (453)
T PRK13347 50 PVSLYLHV-PFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLP----------QRRRVSQLHWGG-GTPTIL 117 (453)
T ss_pred ceEEEEEe-CCccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcC----------CCCeEEEEEEcC-cccccC
Confidence 34666665 4599999999765322 122222 3455555543322221 123688888866 9999 5
Q ss_pred ccccccceeeeeeccccccccceeEEeecccc--hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHH
Q psy9577 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGI--IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILA 249 (354)
Q Consensus 173 n~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~--~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~ 249 (354)
+.+.+.++++.+++..++. ....++++|+.- .+. ++.+.+..-..+.+.+.+.+++.++.+ ++..+.+++.++
T Consensus 118 ~~~~l~~ll~~i~~~~~~~-~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l---~R~~~~~~~~~a 193 (453)
T PRK13347 118 NPDQFERLMAALRDAFDFA-PEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAI---NRIQPEEMVARA 193 (453)
T ss_pred CHHHHHHHHHHHHHhCCCC-CCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh---CCCCCHHHHHHH
Confidence 7788899898887632321 112688888852 233 444444444578899999999999876 566889999999
Q ss_pred HhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC--------CCcccccchhH--
Q psy9577 250 CHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN--------SNLICSKNSRI-- 318 (354)
Q Consensus 250 l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~--------~~~~~p~~e~l-- 318 (354)
++...+.. -..|.+. +|=| -..+.+++.+..+++..++ +.++.+.+|...+. .....|+.++.
T Consensus 194 i~~lr~~G-~~~v~~d--li~GlPgqt~e~~~~tl~~~~~l~---p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~ 267 (453)
T PRK13347 194 VELLRAAG-FESINFD--LIYGLPHQTVESFRETLDKVIALS---PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLR 267 (453)
T ss_pred HHHHHhcC-CCcEEEe--EEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEeccccccchhhHHhcCCccCCcCHHHHHH
Confidence 98765432 2223333 2222 3457789999999988854 34555555532221 12334554332
Q ss_pred --HHHHHHHhhCcee
Q psy9577 319 --KIFAKILMNSGIF 331 (354)
Q Consensus 319 --~~f~~~l~~~gi~ 331 (354)
+...+.|.++|+.
T Consensus 268 ~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 268 QARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHCCCE
Confidence 2345667788863
No 117
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=98.60 E-value=2.6e-07 Score=89.13 Aligned_cols=199 Identities=11% Similarity=0.096 Sum_probs=125.6
Q ss_pred eccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc---ccccccce
Q psy9577 104 STQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL---NYKSTIGA 180 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll---n~~~v~~~ 180 (354)
..+.||+.+|.||......-....+++|+.+++..+.. ..++.|+++|..-+-+ ..+.+.++
T Consensus 68 ~i~~gC~~~C~FC~v~~~rg~~~~~~eei~~~a~~~~~---------------~GlkevvLTsv~~ddl~d~g~~~l~~l 132 (302)
T TIGR00510 68 ILGDICTRRCPFCDVAHGRNPLPPDPEEPAKLAETIKD---------------MGLKYVVITSVDRDDLEDGGASHLAEC 132 (302)
T ss_pred ecCcCcCCCCCcCCccCCCCCCCCCHHHHHHHHHHHHH---------------CCCCEEEEEeecCCCcccccHHHHHHH
Confidence 35789999999998753211223578888877765443 1367799998432322 12457777
Q ss_pred eeeeecc-ccccccceeEEeecc---cchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhcc
Q psy9577 181 LKLILSD-HAYGLSRRHVILSTS---GIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITY 256 (354)
Q Consensus 181 l~~l~~~-~g~~~~~r~itvsT~---G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~ 256 (354)
++.+++. .++ +|.+.|. |....++.+.+.....+..-+.+. +..+.++- ++++.++.++.++.+.+.
T Consensus 133 i~~I~~~~p~i-----~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vr---r~~t~e~~Le~l~~ak~~ 203 (302)
T TIGR00510 133 IEAIREKLPNI-----KIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVR---PGATYRWSLKLLERAKEY 203 (302)
T ss_pred HHHHHhcCCCC-----EEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhC---CCCCHHHHHHHHHHHHHh
Confidence 7777652 233 4555553 322335555555432244444444 55665553 467889988888877654
Q ss_pred CCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCC-----CCCcccccchhHHHHHHHHhhCcee
Q psy9577 257 SPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFP-----NSNLICSKNSRIKIFAKILMNSGIF 331 (354)
Q Consensus 257 ~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~-----~~~~~~p~~e~l~~f~~~l~~~gi~ 331 (354)
. ..+.+..-+|=|+.+++||..+..+++++++ ...+.+-+|-... ...|. ++++.+.++++..+.|+.
T Consensus 204 ~--pgi~~~TgiIVGlGETeee~~etl~~Lrelg---~d~v~igqYl~p~~~~~~v~~~~--~p~~f~~~~~~a~~~gf~ 276 (302)
T TIGR00510 204 L--PNLPTKSGIMVGLGETNEEIKQTLKDLRDHG---VTMVTLGQYLRPSRRHLPVKRYV--SPEEFDYYRSVALEMGFL 276 (302)
T ss_pred C--CCCeecceEEEECCCCHHHHHHHHHHHHhcC---CCEEEeecccCCCCCCCccccCC--CHHHHHHHHHHHHHcCCh
Confidence 3 3577888888899999999999999999943 2456666664321 12333 456677788888888875
Q ss_pred EE
Q psy9577 332 VT 333 (354)
Q Consensus 332 v~ 333 (354)
..
T Consensus 277 ~v 278 (302)
T TIGR00510 277 HA 278 (302)
T ss_pred he
Confidence 43
No 118
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.55 E-value=3.9e-07 Score=91.07 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=64.7
Q ss_pred eEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCc
Q psy9577 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDT 275 (354)
Q Consensus 196 ~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs 275 (354)
-||+ ||---..++++.+..---|.||+||+|++.|+++|+- + ...++++.++.+.+. +..+....|++||+||.
T Consensus 120 yiTL-TNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n-~--~a~~il~~l~~l~~~--~I~~h~qiVlcPGiNDg 193 (433)
T TIGR03279 120 YLTL-TNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKN-P--RAGLILEQLKWFQER--RLQLHAQVVVCPGINDG 193 (433)
T ss_pred eeee-cCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCC-C--CHHHHHHHHHHHHHc--CCeEEEEEEEcCCcCCH
Confidence 3777 6644445788887632237899999999999999962 2 468999999988755 46899999999999997
Q ss_pred hHHHHHHHHHhhc
Q psy9577 276 DIHAIELISLMRK 288 (354)
Q Consensus 276 ~ed~~~La~ll~~ 288 (354)
+ ++++-.+.|..
T Consensus 194 ~-~L~~Ti~dL~~ 205 (433)
T TIGR03279 194 K-HLERTLRDLAQ 205 (433)
T ss_pred H-HHHHHHHHHHh
Confidence 4 55555555554
No 119
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.50 E-value=2.6e-07 Score=89.93 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=114.1
Q ss_pred EEeccccceEeeeeecCCCCc-c--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-ccccc---
Q psy9577 102 CISTQVGCAINCIFCSTGRQG-F--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLNY--- 174 (354)
Q Consensus 102 cvSsq~GC~~~C~fC~tg~~g-~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Plln~--- 174 (354)
-|..|.+|+.+|.||+-.... . ...++++||++++..+.+. .++.|.+.| |+ |-..+
T Consensus 7 ~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~---------------G~~ei~l~~-G~~p~~~~~~~ 70 (322)
T TIGR03550 7 FIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAA---------------GCTEALFTF-GEKPEERYPEA 70 (322)
T ss_pred EeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHC---------------CCCEEEEec-CCCccccHHHH
Confidence 345689999999999865322 1 2368999999998765431 245577877 66 33321
Q ss_pred -------------ccccceeeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccc----ccccee
Q psy9577 175 -------------KSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNL----RNKLVP 236 (354)
Q Consensus 175 -------------~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~----r~~l~p 236 (354)
+.+.++++.+++..++ ..+++...+.+. +..|.+.. ..+.+++.+.++.. ++.+.|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-----~~~~~~g~lt~e~l~~Lk~aG-~~~~~~~Et~~~~l~~~~~~~~~p 144 (322)
T TIGR03550 71 REWLAEMGYDSTLEYLRELCELALEETGL-----LPHTNPGVMSRDELARLKPVN-ASMGLMLETTSERLCKGEAHYGSP 144 (322)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHhcCC-----ccccCCCCCCHHHHHHHHhhC-CCCCcchhhhccccccccccCCCC
Confidence 4555566666643243 344444333333 55555443 23455667776663 333333
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcccc--ceeeeeeeCCCCCCCCc---c
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT--SCKINLIPFNCFPNSNL---I 311 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~--~~~vnLIp~n~~~~~~~---~ 311 (354)
.+ ..++.++.++...+. +.+ +...+|=|..++++|..+.+.++++++... ...+-+.||+|.++.++ .
T Consensus 145 -~k--~~~~~l~~i~~a~~~--Gi~--~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~ 217 (322)
T TIGR03550 145 -GK--DPAVRLETIEDAGRL--KIP--FTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHP 217 (322)
T ss_pred -CC--CHHHHHHHHHHHHHc--CCC--ccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCC
Confidence 12 345667888766533 334 455556688999999999999998743101 12344567888766543 3
Q ss_pred cccchhHHHHHHHH
Q psy9577 312 CSKNSRIKIFAKIL 325 (354)
Q Consensus 312 ~p~~e~l~~f~~~l 325 (354)
+++..+..+.....
T Consensus 218 ~~s~~e~lr~iAv~ 231 (322)
T TIGR03550 218 EPSLEEMLRTVAVA 231 (322)
T ss_pred CCCHHHHHHHHHHH
Confidence 45555555544443
No 120
>PRK08445 hypothetical protein; Provisional
Probab=98.46 E-value=3.3e-07 Score=90.18 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=107.2
Q ss_pred ccccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccccccee
Q psy9577 105 TQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l 181 (354)
.+.+|+.+|.||+-.+. +-...++.+||++.+..+... ..+.|+++|...|-+..+.+.+++
T Consensus 48 ~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~---------------g~~~i~~~gg~~~~~~~e~~~~l~ 112 (348)
T PRK08445 48 YTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAI---------------GGTQILFQGGVHPKLKIEWYENLV 112 (348)
T ss_pred cccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHc---------------CCCEEEEecCCCCCCCHHHHHHHH
Confidence 35899999999986542 112346999999998765442 135789998345556778888999
Q ss_pred eeeecccc-ccccceeEE-eec---------ccch-h-chHhhhhcCcceeE-EeeccCcccccccceeCCCcCchHHHH
Q psy9577 182 KLILSDHA-YGLSRRHVI-LST---------SGII-P-MIDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLKELI 247 (354)
Q Consensus 182 ~~l~~~~g-~~~~~r~it-vsT---------~G~~-p-~i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~~il 247 (354)
+.+++... + ++. .|. .|.. + .+++|.+.+...+. .-+.+.+++.++++.| ++.+.++-+
T Consensus 113 ~~Ik~~~p~i-----~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~p--k~~t~~~~i 185 (348)
T PRK08445 113 SHIAQKYPTI-----TIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAP--KKLDSDRWL 185 (348)
T ss_pred HHHHHHCCCc-----EEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCC--CCCCHHHHH
Confidence 98887432 2 332 211 2221 2 24555554433443 5688899999999876 456667777
Q ss_pred HHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCc
Q psy9577 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNK 290 (354)
Q Consensus 248 ~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~ 290 (354)
+.++...+. | +.+...+|=|.-.+.+|..+.+.++++++
T Consensus 186 ~~i~~a~~~--G--i~~~sg~i~G~~Et~edr~~~l~~lreLq 224 (348)
T PRK08445 186 EVHRQAHLI--G--MKSTATMMFGTVENDEEIIEHWERIRDLQ 224 (348)
T ss_pred HHHHHHHHc--C--CeeeeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 888765433 2 55566667788899999999999998854
No 121
>PLN02428 lipoic acid synthase
Probab=98.41 E-value=1.5e-06 Score=85.25 Aligned_cols=197 Identities=9% Similarity=0.066 Sum_probs=119.0
Q ss_pred cccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc----ccccccccccee
Q psy9577 106 QVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE----PLLNYKSTIGAL 181 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE----Plln~~~v~~~l 181 (354)
..||+.+|+||+-+...-...+.++|+.+.+..+... .++.|+|+| |. |-...+.+.+++
T Consensus 109 g~gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~---------------Glk~vvltS-g~rddl~D~ga~~~~eli 172 (349)
T PLN02428 109 GDTCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASW---------------GVDYVVLTS-VDRDDLPDGGSGHFAETV 172 (349)
T ss_pred cCCCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHc---------------CCCEEEEEE-cCCCCCCcccHHHHHHHH
Confidence 3799999999997642212234567766655543321 245688887 53 323345677777
Q ss_pred eeeeccc-cccccceeEEeecccch--h-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 182 KLILSDH-AYGLSRRHVILSTSGII--P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 182 ~~l~~~~-g~~~~~r~itvsT~G~~--p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
+.|++.. ++ ++.+.|-++. + .++.|.+.....+...+.+ .+..|+++.+ ++.+.++.++.++.+.+..
T Consensus 173 r~Ir~~~P~i-----~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~--~~~sye~~Le~L~~ak~~~ 244 (349)
T PLN02428 173 RRLKQLKPEI-----LVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRD--PRAGYKQSLDVLKHAKESK 244 (349)
T ss_pred HHHHHhCCCc-----EEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcC--CCCCHHHHHHHHHHHHHhC
Confidence 7777532 23 6777665542 2 3555655554456666665 4567766642 2457888888888765543
Q ss_pred CCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC-CCC----CCCcccccchhHHHHHHHHhhCceeE
Q psy9577 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN-CFP----NSNLICSKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n-~~~----~~~~~~p~~e~l~~f~~~l~~~gi~v 332 (354)
+ .+.+..-+|=|+-++++|+.++++++++++. ..+.+-+|- |.. -..|- ++++.+.++++..+.|+..
T Consensus 245 p--Gi~tkSg~MvGLGET~Edv~e~l~~Lrelgv---d~vtigqyL~Ps~~h~~v~~~v--~p~~f~~~~~~~~~~gf~~ 317 (349)
T PLN02428 245 P--GLLTKTSIMLGLGETDEEVVQTMEDLRAAGV---DVVTFGQYLRPTKRHLPVKEYV--TPEKFEFWREYGEEMGFRY 317 (349)
T ss_pred C--CCeEEEeEEEecCCCHHHHHHHHHHHHHcCC---CEEeeccccCCCcceeeeeccc--CHHHHHHHHHHHHHcCCce
Confidence 2 3445544555889999999999999998431 122222332 211 12344 3467888888888889854
Q ss_pred E
Q psy9577 333 T 333 (354)
Q Consensus 333 ~ 333 (354)
.
T Consensus 318 v 318 (349)
T PLN02428 318 V 318 (349)
T ss_pred E
Confidence 4
No 122
>PRK08444 hypothetical protein; Provisional
Probab=98.38 E-value=1e-06 Score=86.78 Aligned_cols=196 Identities=16% Similarity=0.120 Sum_probs=115.8
Q ss_pred eccccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccce
Q psy9577 104 STQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
+.+.-|..+|.||+-... .-...|+.+||++.+..+.. ..++.|.+.|.+-|-..++.+.++
T Consensus 54 n~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~---------------~G~~ei~iv~G~~p~~~~e~y~e~ 118 (353)
T PRK08444 54 NPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVK---------------RGIKEVHIVSAHNPNYGYEWYLEI 118 (353)
T ss_pred ccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHH---------------CCCCEEEEeccCCCCCCHHHHHHH
Confidence 345789999999986421 11234899999999876543 135678888867788778889999
Q ss_pred eeeeeccc-cccccceeEEee----------cccchh--chHhhhhcCcceeEE-eeccCcccccccceeCCCcCchHHH
Q psy9577 181 LKLILSDH-AYGLSRRHVILS----------TSGIIP--MIDKLAQECPVELAV-SLHASNNNLRNKLVPISKKYPLKEL 246 (354)
Q Consensus 181 l~~l~~~~-g~~~~~r~itvs----------T~G~~p--~i~~l~~~~~~~Lai-SL~a~~~e~r~~l~p~~~~~~l~~i 246 (354)
++.+++.. ++ ++..= +.|... .+.+|.+.+...+.- +....+++.|.+|.|. +.+-++.
T Consensus 119 ir~Ik~~~p~i-----~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~--k~~~~~~ 191 (353)
T PRK08444 119 FKKIKEAYPNL-----HVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKG--KVSSERW 191 (353)
T ss_pred HHHHHHHCCCc-----eEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCC--CCCHHHH
Confidence 99998742 33 55541 234321 234444443222211 2222478888999873 4555666
Q ss_pred HHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeC--CCCCC--CCcccccchhHHHHH
Q psy9577 247 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPF--NCFPN--SNLICSKNSRIKIFA 322 (354)
Q Consensus 247 l~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~--n~~~~--~~~~~p~~e~l~~f~ 322 (354)
++.++...+. | +.....+|=|.=.+.+|.-+.+..+++++.+...--.+||. .|-+. ....+++.++..+..
T Consensus 192 ~~i~~~a~~~--G--i~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~i 267 (353)
T PRK08444 192 LEIHKYWHKK--G--KMSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTI 267 (353)
T ss_pred HHHHHHHHHc--C--CCccceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHH
Confidence 6665544322 3 33355666677799998888888888854222222234443 33221 123446666655555
Q ss_pred HHH
Q psy9577 323 KIL 325 (354)
Q Consensus 323 ~~l 325 (354)
.+.
T Consensus 268 Ai~ 270 (353)
T PRK08444 268 AIS 270 (353)
T ss_pred HHH
Confidence 544
No 123
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=98.36 E-value=4.1e-06 Score=81.30 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=120.4
Q ss_pred EeccccceE----eeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccC---cccc-cc
Q psy9577 103 ISTQVGCAI----NCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG---EPLL-NY 174 (354)
Q Consensus 103 vSsq~GC~~----~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmG---EPll-n~ 174 (354)
+.++.||+. +|.||...... .+..++++|++|+......++.. ....+. -.|.+ | .|.. ..
T Consensus 19 i~~srGC~~~~~g~C~FC~~~~~~-~r~~s~e~i~~~i~~~~~~~~~~--------~~~~~i-kif~s-gsf~D~~~~~~ 87 (313)
T TIGR01210 19 ILRTRGCYWAREGGCYMCGYLADS-SPEVTEENLINQFDEAIEKYKEK--------IKDFVI-KIFTS-GSFLDDREVPK 87 (313)
T ss_pred EEeCCCCCCCCCCcCccCCCCCCC-CCCCChhHHHHHHHHHHHHhhcc--------cccEEE-EEecC-CCcCCcCcCCH
Confidence 445699999 69999654333 24569999999998877655321 000011 23545 4 4433 33
Q ss_pred ccccceeeeeecccc-ccccceeEEeeccc--chhc-hHhhhhcCc-ceeEEeeccCcccccccceeCCCcCchHHHHHH
Q psy9577 175 KSTIGALKLILSDHA-YGLSRRHVILSTSG--IIPM-IDKLAQECP-VELAVSLHASNNNLRNKLVPISKKYPLKELILA 249 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g-~~~~~r~itvsT~G--~~p~-i~~l~~~~~-~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~ 249 (354)
+.+.++++.+.+ .+ + ..++++|.- +.+. +..+.+.+- ..|.+-+.+.+++.+++. +||.++.+++.++
T Consensus 88 ~~~~~i~~~l~~-~~~~----~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~--inKg~t~~~~~~a 160 (313)
T TIGR01210 88 ETRNYIFEKIAQ-RDNL----KEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKS--INKGSTFEDFIRA 160 (313)
T ss_pred HHHHHHHHHHHh-cCCc----ceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHh--hCCCCCHHHHHHH
Confidence 455566666654 32 2 267777742 2222 444444332 258889999999998643 2678899999999
Q ss_pred HhhhhccCCCceeeeeeeeccCCC----CchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC---------Ccccccch
Q psy9577 250 CHRYITYSPRHMITFEYCMLHGIN----DTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---------NLICSKNS 316 (354)
Q Consensus 250 l~~~~~~~~~~~v~ieyvlI~GvN----Ds~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~---------~~~~p~~e 316 (354)
++...+. +..|. -|.|+.+.. ++.+++.+.++++.. ...+|.+.|.++.++. .|++|.--
T Consensus 161 i~~~~~~--Gi~v~-~~~i~G~P~~se~ea~ed~~~ti~~~~~----l~~~vs~~~l~v~~gT~l~~~~~~G~~~pp~lw 233 (313)
T TIGR01210 161 AELARKY--GAGVK-AYLLFKPPFLSEKEAIADMISSIRKCIP----VTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLW 233 (313)
T ss_pred HHHHHHc--CCcEE-EEEEecCCCCChhhhHHHHHHHHHHHHh----cCCcEEEECCEEeCCCHHHHHHHcCCCCCCCHH
Confidence 9876543 34544 355554443 334566667777766 3356777787777664 35666333
Q ss_pred hHHHHHHHHhhCceeE
Q psy9577 317 RIKIFAKILMNSGIFV 332 (354)
Q Consensus 317 ~l~~f~~~l~~~gi~v 332 (354)
.+.++.+.+++.+..|
T Consensus 234 s~~e~l~e~~~~~~~~ 249 (313)
T TIGR01210 234 SVAEVLKEAKKIGAEV 249 (313)
T ss_pred HHHHHHHHHHhhCCeE
Confidence 3333333334334433
No 124
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.36 E-value=1.3e-06 Score=86.74 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=109.9
Q ss_pred ccccceEeeeeecCCCCc--c-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccC-ccccc-cccccc
Q psy9577 105 TQVGCAINCIFCSTGRQG--F-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG-EPLLN-YKSTIG 179 (354)
Q Consensus 105 sq~GC~~~C~fC~tg~~g--~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmG-EPlln-~~~v~~ 179 (354)
.+..|+.+|.||+-.... . ...++.+||++.+..+... .++.|.+.| | .|... .+.+.+
T Consensus 66 ~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~---------------G~~~i~l~~-G~~p~~~~~e~~~~ 129 (371)
T PRK07360 66 FTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKR---------------GATEVCIQG-GLHPAADSLEFYLE 129 (371)
T ss_pred cchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhC---------------CCCEEEEcc-CCCCCCCcHHHHHH
Confidence 357999999999864321 1 1248999999988754331 256788887 6 67665 678889
Q ss_pred eeeeeeccc-cccccceeEEee----------cccchh--chHhhhhcCcceeE-EeeccCcccccccceeCCCcCchHH
Q psy9577 180 ALKLILSDH-AYGLSRRHVILS----------TSGIIP--MIDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 180 ~l~~l~~~~-g~~~~~r~itvs----------T~G~~p--~i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
+++.+++.. ++ +++.. +.|... .+++|.+.+-..+. -+-...+++.|+++.|- +.+.++
T Consensus 130 ~i~~ik~~~~~i-----~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~--~~s~~~ 202 (371)
T PRK07360 130 ILEAIKEEFPDI-----HLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPE--KIKTAE 202 (371)
T ss_pred HHHHHHHhCCCc-----ceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCC--CCCHHH
Confidence 999998632 23 45433 457653 25566665432332 12223456777777762 346677
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN 303 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n 303 (354)
-++.++...+. -+.+...+|=|...+.+|..+.+.++++++.....-..+||+|
T Consensus 203 ~l~~i~~a~~~----Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 203 WIEIVKTAHKL----GLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred HHHHHHHHHHc----CCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 78888765433 2555677777889999999999999998542222223456665
No 125
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.30 E-value=6.7e-07 Score=85.36 Aligned_cols=162 Identities=19% Similarity=0.303 Sum_probs=104.4
Q ss_pred EeccccceEeeeeecCCCCccc--------cc-chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc
Q psy9577 103 ISTQVGCAINCIFCSTGRQGFV--------RN-LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN 173 (354)
Q Consensus 103 vSsq~GC~~~C~fC~tg~~g~~--------r~-lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln 173 (354)
+..+.-||.+|-||..+...++ |. -+.++|++++..... .++.++| |||++-
T Consensus 32 lFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a------------------~GasiTG-GdPl~~ 92 (353)
T COG2108 32 LFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDA------------------LGASITG-GDPLLE 92 (353)
T ss_pred EEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcc------------------ccccccC-CChHHH
Confidence 3456789999999998643221 22 246778777653211 3478889 999999
Q ss_pred cccccceeeeeeccccccccceeEEeecccchhc---hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHH
Q psy9577 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM---IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILAC 250 (354)
Q Consensus 174 ~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~---i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l 250 (354)
.+.+.+.++.||+..|-.+ ||-+=|+|..+. +++|.+...+.+ -+|-+.+ .....+..++++
T Consensus 93 ieR~~~~ir~LK~efG~~f---HiHLYT~g~~~~~e~l~~L~eAGLDEI--RfHp~~~----------~~~~~e~~i~~l 157 (353)
T COG2108 93 IERTVEYIRLLKDEFGEDF---HIHLYTTGILATEEALKALAEAGLDEI--RFHPPRP----------GSKSSEKYIENL 157 (353)
T ss_pred HHHHHHHHHHHHHhhccce---eEEEeeccccCCHHHHHHHHhCCCCeE--EecCCCc----------cccccHHHHHHH
Confidence 9999999999999877554 999999998754 555655543333 2332210 011224455555
Q ss_pred hhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCC
Q psy9577 251 HRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNC 304 (354)
Q Consensus 251 ~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~ 304 (354)
+-.. .. +..|-+|.+.|||.-| .+.++++++.+.+. ....+|=+.|+.
T Consensus 158 ~~A~-~~-g~dvG~EiPaipg~e~---~i~e~~~~~~~~~~-~FlNiNELE~sE 205 (353)
T COG2108 158 KIAK-KY-GMDVGVEIPAIPGEEE---AILEFAKALDENGL-DFLNINELEFSE 205 (353)
T ss_pred HHHH-Hh-CccceeecCCCcchHH---HHHHHHHHHHhccc-ceeeeeeeeecc
Confidence 5322 33 3689999999999644 67888888887431 124555566654
No 126
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.29 E-value=2.3e-06 Score=83.11 Aligned_cols=206 Identities=15% Similarity=0.169 Sum_probs=133.5
Q ss_pred ccceEeeeeecCCC---Ccc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccccccccee
Q psy9577 107 VGCAINCIFCSTGR---QGF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181 (354)
Q Consensus 107 ~GC~~~C~fC~tg~---~g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l 181 (354)
.+|+-+|.||.-.. .+. ..-++.+||++....+... |..+ --++-+|-|-+ -..+.+.+++
T Consensus 59 g~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~------------Ga~r-~c~~aagr~~~-~~~~~i~~~v 124 (335)
T COG0502 59 GCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAA------------GATR-FCMGAAGRGPG-RDMEEVVEAI 124 (335)
T ss_pred CCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHc------------CCce-EEEEEeccCCC-ccHHHHHHHH
Confidence 56799999997432 222 3347899999998776542 1111 12333333303 4568899999
Q ss_pred eeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCC
Q psy9577 182 KLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259 (354)
Q Consensus 182 ~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~ 259 (354)
+.+++..|+ .+++ |.|... ..++|.+.+.....--|++ +++.|.+|+|. .++++-++.++...+ . |
T Consensus 125 ~~Vk~~~~l-----e~c~-slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt---~t~edR~~tl~~vk~-~-G 192 (335)
T COG0502 125 KAVKEELGL-----EVCA-SLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITT---RTYEDRLNTLENVRE-A-G 192 (335)
T ss_pred HHHHHhcCc-----HHhh-ccCCCCHHHHHHHHHcChhheeccccc-CHHHHcccCCC---CCHHHHHHHHHHHHH-c-C
Confidence 999976777 7877 557654 3677777764456667888 89999999884 578898888886543 2 2
Q ss_pred ceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-c--ccchhHHHHHHHHhhCceeEEEec
Q psy9577 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-C--SKNSRIKIFAKILMNSGIFVTIRK 336 (354)
Q Consensus 260 ~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-~--p~~e~l~~f~~~l~~~gi~v~ir~ 336 (354)
+.+-.=.|=|+..+.+|--+++..|+.+. .+..|-+-.+||.+|.++. . .+.-+..+.....+-.--...||-
T Consensus 193 --i~vcsGgI~GlGEs~eDri~~l~~L~~l~--~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~ 268 (335)
T COG0502 193 --IEVCSGGIVGLGETVEDRAELLLELANLP--TPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRL 268 (335)
T ss_pred --CccccceEecCCCCHHHHHHHHHHHHhCC--CCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEc
Confidence 55666678899999999777777777743 1334444457788888776 3 333333333333443334566777
Q ss_pred ccccch
Q psy9577 337 IRGNDI 342 (354)
Q Consensus 337 ~~G~di 342 (354)
+-|++.
T Consensus 269 s~gr~~ 274 (335)
T COG0502 269 SAGRET 274 (335)
T ss_pred cCCccc
Confidence 666543
No 127
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.29 E-value=2.2e-06 Score=82.49 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=104.6
Q ss_pred eccccceEeeeeecCCCCcc-----cccchhhh-hhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc---
Q psy9577 104 STQVGCAINCIFCSTGRQGF-----VRNLTVGE-IIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY--- 174 (354)
Q Consensus 104 Ssq~GC~~~C~fC~tg~~g~-----~r~lt~~E-Iv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~--- 174 (354)
+.=+||..+|.||....+.. ...+.+.+ +++.+.+. +... +.+...|.++.+=+|..-.
T Consensus 34 npy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~e---l~~~---------~~k~~~i~is~~TDpyqp~E~~ 101 (297)
T COG1533 34 NPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERE---LRKP---------GPKRTVIAISSVTDPYQPIEKE 101 (297)
T ss_pred CCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHH---Hhhc---------cCCceEEEEecCCCCCCcchHH
Confidence 45589999999998764443 12345666 55555432 2110 1234457777778888642
Q ss_pred -ccccceeeeeeccccccccceeEEeecc-cchh-chHhhh---hcCcceeEEeeccCcccccccceeCCCcCchHHHHH
Q psy9577 175 -KSTIGALKLILSDHAYGLSRRHVILSTS-GIIP-MIDKLA---QECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248 (354)
Q Consensus 175 -~~v~~~l~~l~~~~g~~~~~r~itvsT~-G~~p-~i~~l~---~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~ 248 (354)
.....+++.+.. .|+ ++.|.|= .++- .++-|. +...+.+++|+.+.|++.++.+=| +.-+.++=++
T Consensus 102 ~~ltR~ilei~~~-~~~-----~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP--~apsp~~Ri~ 173 (297)
T COG1533 102 YRLTRKILEILLK-YGF-----PVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEP--RAPSPEERLE 173 (297)
T ss_pred HHHHHHHHHHHHH-cCC-----cEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCC--CCcCHHHHHH
Confidence 234455555554 566 7888884 3332 233333 333467899999998888888766 3446788889
Q ss_pred HHhhhhccCCCceeeee-eeeccCCCCchHHHHHHHHHhhc
Q psy9577 249 ACHRYITYSPRHMITFE-YCMLHGINDTDIHAIELISLMRK 288 (354)
Q Consensus 249 ~l~~~~~~~~~~~v~ie-yvlI~GvNDs~ed~~~La~ll~~ 288 (354)
+++.+.+. |.++.+. -++|||+|| ++++++..-+..
T Consensus 174 al~~l~ea--Gi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ 210 (297)
T COG1533 174 ALKELSEA--GIPVGLFVAPIIPGLND--EELERILEAAAE 210 (297)
T ss_pred HHHHHHHC--CCeEEEEEecccCCCCh--HHHHHHHHHHHH
Confidence 99988765 3677666 689999999 678877775554
No 128
>PRK00955 hypothetical protein; Provisional
Probab=98.27 E-value=1.8e-06 Score=90.10 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=107.6
Q ss_pred ceeEEeccccceEeeeeecCCCC-cc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccccc--
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ-GF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNY-- 174 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~-g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~-- 174 (354)
...-|.+|.||+.+|.||+.+.. |. .+..+.++|++++......- ..+++ ++-.|=|.+|.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~--------------gfkg~-I~DlgGptan~Yg 356 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMP--------------DFKGY-IHDVGGPTANFRK 356 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhcc--------------CCeEE-EEeCCCCCccccc
Confidence 34667788999999999987744 33 36789999999987654320 01111 11111122221
Q ss_pred ------------------------------ccccceeeeeeccccccccceeEEeecccc------hh----chHhhhhc
Q psy9577 175 ------------------------------KSTIGALKLILSDHAYGLSRRHVILSTSGI------IP----MIDKLAQE 214 (354)
Q Consensus 175 ------------------------------~~v~~~l~~l~~~~g~~~~~r~itvsT~G~------~p----~i~~l~~~ 214 (354)
..+.++++.+.+..|+ +++.|++ |+ .+ .+++|++.
T Consensus 357 ~~c~~~~~~~~c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gv----krv~isS-GIR~D~l~~~~~~~~l~eL~~~ 431 (620)
T PRK00955 357 MACKKQLKCGACKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGV----KKVFIRS-GIRYDYLLHDKNDEFFEELCEH 431 (620)
T ss_pred cccccccccccccccccccCccccccCcChHHHHHHHHHHhccCCc----eEEEeec-ceeccccccCCcHHHHHHHHHH
Confidence 2466667666654454 3666644 42 11 24455554
Q ss_pred C-cceeEEeeccCcccccccceeCCCcC--chHHHHHHHhhhhccCCCceeee-eeeeccCCCCchHHHHHHHHHhhcCc
Q psy9577 215 C-PVELAVSLHASNNNLRNKLVPISKKY--PLKELILACHRYITYSPRHMITF-EYCMLHGINDTDIHAIELISLMRKNK 290 (354)
Q Consensus 215 ~-~~~LaiSL~a~~~e~r~~l~p~~~~~--~l~~il~~l~~~~~~~~~~~v~i-eyvlI~GvNDs~ed~~~La~ll~~~~ 290 (354)
. .-.|.|.+.+.+++.-+.+- |.. .++++++.++++.... +.+..+ -|+++.--.++++|+.++++|+++++
T Consensus 432 ~vsg~L~IapESgSd~VLk~M~---K~~~~~~~~f~~~~~~i~~~~-G~~~~I~~yfIvGfPGETeEDf~et~eflkel~ 507 (620)
T PRK00955 432 HVSGQLKVAPEHISDRVLKLMG---KPSREVYDKFVKKFDRINKKL-GKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLG 507 (620)
T ss_pred hcCCCceeCcCCCChHHHHHhC---CCCHHHHHHHHHHHHHhhhhc-CCCccEEEEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 2 22477899999988876542 221 2344444455554333 223334 46666557889999999999999854
Q ss_pred cccceeeeeeeCCCCCC
Q psy9577 291 ILTSCKINLIPFNCFPN 307 (354)
Q Consensus 291 ~~~~~~vnLIp~n~~~~ 307 (354)
...+++-+|.|.++
T Consensus 508 ---~~~~qV~~fTP~PG 521 (620)
T PRK00955 508 ---YQPEQVQDFYPTPG 521 (620)
T ss_pred ---CCcceeeeeecCCC
Confidence 23455567777765
No 129
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=98.23 E-value=1.4e-05 Score=79.41 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=101.4
Q ss_pred eEEeeeeeccCcccc-ccccccceeeeeeccccccccceeEEeeccc--chhc-hHhhhhcCcceeEEeeccCccccccc
Q psy9577 158 QITNIVMMGMGEPLL-NYKSTIGALKLILSDHAYGLSRRHVILSTSG--IIPM-IDKLAQECPVELAVSLHASNNNLRNK 233 (354)
Q Consensus 158 ~i~~Vvf~GmGEPll-n~~~v~~~l~~l~~~~g~~~~~r~itvsT~G--~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~ 233 (354)
.++.|-| |.|.|++ +.+.+.++++.++.... ..||++++- +.+. ++.+.+.+...+.+.+.+.+++..+.
T Consensus 58 ~i~~iy~-GGGTPs~l~~~~l~~ll~~i~~~~~-----~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~ 131 (370)
T PRK06294 58 FIDTVFF-GGGTPSLVPPALIQDILKTLEAPHA-----TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKL 131 (370)
T ss_pred ceeEEEE-CCCccccCCHHHHHHHHHHHHhCCC-----CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHH
Confidence 4665655 5599996 45677777777754322 278898874 2222 44444444457899999999999887
Q ss_pred ceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc--
Q psy9577 234 LVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL-- 310 (354)
Q Consensus 234 l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~-- 310 (354)
+ ++.++.+++.++++...+. +-..| ..-||-| ..++.+++.+-.+++..++ +.++.+-++.+.++.++
T Consensus 132 l---~R~~~~~~~~~ai~~~~~~-g~~~v--~~Dli~GlPgqt~~~~~~~l~~~~~l~---~~~is~y~l~~~~gT~l~~ 202 (370)
T PRK06294 132 L---GRTHSSSKAIDAVQECSEH-GFSNL--SIDLIYGLPTQSLSDFIVDLHQAITLP---ITHISLYNLTIDPHTSFYK 202 (370)
T ss_pred c---CCCCCHHHHHHHHHHHHHc-CCCeE--EEEeecCCCCCCHHHHHHHHHHHHccC---CCeEEEeeeEecCCChHHH
Confidence 6 5677899999999866533 21224 4445666 4556888888888877743 46777777776665432
Q ss_pred -------ccccchhHH----HHHHHHhhCce
Q psy9577 311 -------ICSKNSRIK----IFAKILMNSGI 330 (354)
Q Consensus 311 -------~~p~~e~l~----~f~~~l~~~gi 330 (354)
..|++++.. ...+.|.++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy 233 (370)
T PRK06294 203 HRKRLLPSIADEEILAEMSLAAEELLTSQGF 233 (370)
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence 234544433 34556777775
No 130
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=98.22 E-value=9.7e-06 Score=81.29 Aligned_cols=210 Identities=11% Similarity=0.089 Sum_probs=127.5
Q ss_pred eeEEeccccceEeeeeecCCCCcccc---c---chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-c
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVR---N---LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-L 172 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r---~---lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-l 172 (354)
++.|-. .-|+..|.||.-.....++ . -..++-++.+.+..+.+... +..++.|-|.| |.|+ +
T Consensus 12 ~lYiHi-PFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~---------~~~i~~iy~GG-GTps~l 80 (400)
T PRK07379 12 SAYIHI-PFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSF---------GQPLQTVFFGG-GTPSLL 80 (400)
T ss_pred EEEEEe-ccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhcc---------CCceeEEEECC-CccccC
Confidence 455554 5699999999864321111 1 11222233222211111111 23577777755 9999 4
Q ss_pred ccccccceeeeeeccccccccceeEEeecc--cchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHH
Q psy9577 173 NYKSTIGALKLILSDHAYGLSRRHVILSTS--GIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILA 249 (354)
Q Consensus 173 n~~~v~~~l~~l~~~~g~~~~~r~itvsT~--G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~ 249 (354)
+.+.+.++++.+++..++. ....+|++++ .+.+. ++.+.+.+...|.+-+.+.+++..+.+ +|.++.+++.++
T Consensus 81 ~~~~l~~ll~~i~~~~~~~-~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~~~~~~~~a 156 (400)
T PRK07379 81 SVEQLERILTTLDQRFGIA-PDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSHRVKDIFAA 156 (400)
T ss_pred CHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCCCHHHHHHH
Confidence 7788888888887532321 1136888775 23332 444444444578899999999998876 577889999999
Q ss_pred HhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC---------cccccchhHH
Q psy9577 250 CHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN---------LICSKNSRIK 319 (354)
Q Consensus 250 l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~---------~~~p~~e~l~ 319 (354)
++...+. +.. .+..-+|=| -+.+.+++.+-++++..++ +.+|.+-++.+.++.+ +..|+.++..
T Consensus 157 i~~l~~~--G~~-~v~~dlI~GlPgqt~e~~~~tl~~~~~l~---p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~ 230 (400)
T PRK07379 157 VDLIHQA--GIE-NFSLDLISGLPHQTLEDWQASLEAAIALN---PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTA 230 (400)
T ss_pred HHHHHHc--CCC-eEEEEeecCCCCCCHHHHHHHHHHHHcCC---CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHH
Confidence 9876543 222 144444544 3578899999889888753 4677777777766643 3446655533
Q ss_pred ----HHHHHHhhCce
Q psy9577 320 ----IFAKILMNSGI 330 (354)
Q Consensus 320 ----~f~~~l~~~gi 330 (354)
...+.|.++|+
T Consensus 231 ~~~~~~~~~L~~~Gy 245 (400)
T PRK07379 231 AMYRLAQEILTQAGY 245 (400)
T ss_pred HHHHHHHHHHHHcCC
Confidence 34566778886
No 131
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.18 E-value=2.6e-06 Score=84.54 Aligned_cols=153 Identities=22% Similarity=0.324 Sum_probs=103.1
Q ss_pred CCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEE
Q psy9577 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVI 198 (354)
Q Consensus 119 g~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~it 198 (354)
+..++.-..|.++|-+.+...+. .+| ..-..|-|+| |||++. +.+.++++..++ .|+. ||.
T Consensus 83 ~~ag~vYEpt~eqi~~Ml~~lk~----e~p--------~~~~aIq~tG-GEPTvr-~DL~eiv~~a~e-~g~~----hVq 143 (475)
T COG1964 83 EEAGYIYEPTLEQIREMLRNLKK----EHP--------VGANAVQFTG-GEPTLR-DDLIEIIKIARE-EGYD----HVQ 143 (475)
T ss_pred hhcCcccCCCHHHHHHHHHHHHh----cCC--------CCCceeEecC-CCccch-hhHHHHHHHHhh-cCcc----EEE
Confidence 34556556676666554443322 101 1235789999 999997 899999999997 7874 999
Q ss_pred eecccch----hc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCC
Q psy9577 199 LSTSGII----PM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGIN 273 (354)
Q Consensus 199 vsT~G~~----p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvN 273 (354)
+.|||+- |. .++|.+....+|.+|.+..+++.+.+. .+++...+++++.. . ...|.+--.|++|+|
T Consensus 144 inTnGirlA~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~---g-~~svVLVptl~rgvN 214 (475)
T COG1964 144 LNTNGIRLAFDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA---G-LPSVVLVPTLIRGVN 214 (475)
T ss_pred EccCceeeccCHHHHHHHHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc---C-CCcEEEEeehhcccC
Confidence 9999974 22 233444456678999999999998775 45666677777653 2 234667778899999
Q ss_pred CchHHHHHHHHHhhcCccccceeeeeeeC
Q psy9577 274 DTDIHAIELISLMRKNKILTSCKINLIPF 302 (354)
Q Consensus 274 Ds~ed~~~La~ll~~~~~~~~~~vnLIp~ 302 (354)
|. ++..+.+|....- +..--||+-|+
T Consensus 215 d~--~lG~iirfa~~n~-dvVrgVnfQPV 240 (475)
T COG1964 215 DH--ELGAIIRFALNNI-DVVRGVNFQPV 240 (475)
T ss_pred hH--HHHHHHHHHHhcc-ccccccceEEE
Confidence 97 6778888876410 01234666665
No 132
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.14 E-value=2.3e-05 Score=78.42 Aligned_cols=211 Identities=12% Similarity=0.112 Sum_probs=127.4
Q ss_pred eeEEeccccceEeeeeecCCCCcccc--cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-cccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVR--NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NYKS 176 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r--~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~~~ 176 (354)
++.|-. .-|.-.|.||.-....... ....++.++.+.+..+..... ..+.+++.|-|.| |.|++ +.+.
T Consensus 21 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~-------~~~~~i~siy~GG-GTPs~L~~~~ 91 (394)
T PRK08898 21 SLYVHF-PWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPL-------VWGRQVHTVFIGG-GTPSLLSAAG 91 (394)
T ss_pred EEEEEe-CCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHh-------ccCCceeEEEECC-CCcCCCCHHH
Confidence 455554 5699999999854322111 122233444433322211100 0013577776645 99996 6678
Q ss_pred ccceeeeeeccccccccceeEEeecc-c-chh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhh
Q psy9577 177 TIGALKLILSDHAYGLSRRHVILSTS-G-IIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRY 253 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~r~itvsT~-G-~~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~ 253 (354)
+.++++.+++...+. +...||++++ + +.+ .++.+.+.+...+.+-+.+.+++..+.+ ++.++.+++.++++..
T Consensus 92 L~~ll~~i~~~~~~~-~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l---~R~~~~~~~~~~i~~~ 167 (394)
T PRK08898 92 LDRLLSDVRALLPLD-PDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKAL---GRIHDGAEARAAIEIA 167 (394)
T ss_pred HHHHHHHHHHhCCCC-CCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh---CCCCCHHHHHHHHHHH
Confidence 888888887633221 1246888886 2 222 2545555554568899999999999876 4566778888888765
Q ss_pred hccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc-----ccccchhHH----HHHH
Q psy9577 254 ITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL-----ICSKNSRIK----IFAK 323 (354)
Q Consensus 254 ~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~-----~~p~~e~l~----~f~~ 323 (354)
.+. ...| ..-+|=|+ +++.+++.+-++++..++ +.+|.+-++.+.++.++ ..|+.+... ...+
T Consensus 168 ~~~--~~~v--~~dlI~GlPgqt~~~~~~~l~~~~~l~---p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T PRK08898 168 AKH--FDNF--NLDLMYALPGQTLDEALADVETALAFG---PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEA 240 (394)
T ss_pred HHh--CCce--EEEEEcCCCCCCHHHHHHHHHHHHhcC---CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHH
Confidence 432 2334 45566665 778889988778777743 46777778777666543 234544433 3355
Q ss_pred HHhhCce
Q psy9577 324 ILMNSGI 330 (354)
Q Consensus 324 ~l~~~gi 330 (354)
.|.++|.
T Consensus 241 ~L~~~Gy 247 (394)
T PRK08898 241 RLAAAGY 247 (394)
T ss_pred HHHHcCC
Confidence 6777775
No 133
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=98.14 E-value=1.6e-05 Score=79.26 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=124.1
Q ss_pred eeEEeccccceEeeeeecCCCCcccccch----hhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-cc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVRNLT----VGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NY 174 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r~lt----~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~ 174 (354)
++.|-. .-|.-.|.||.-......+ .. .+.+.+++......++ +.+++.|-|.| |-|++ +.
T Consensus 6 ~lYiHI-PFC~~kC~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~-----------~~~i~tiy~GG-GTPs~l~~ 71 (380)
T PRK09057 6 GLYVHW-PFCLAKCPYCDFNSHVRHA-IDQARFAAAFLRELATEAARTG-----------PRTLTSIFFGG-GTPSLMQP 71 (380)
T ss_pred EEEEEe-CCcCCcCCCCCCcccCcCc-CCHHHHHHHHHHHHHHHHHHcC-----------CCCcCeEEeCC-CccccCCH
Confidence 344443 4599999999754321112 22 3344444433222221 23566666645 99995 56
Q ss_pred ccccceeeeeeccccccccc-eeEEeeccc--chh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHH
Q psy9577 175 KSTIGALKLILSDHAYGLSR-RHVILSTSG--IIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILAC 250 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~-r~itvsT~G--~~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l 250 (354)
+.+.++++.+++.. .+.. ..+|++++- +.+ .++.+.+.+...|.+-+.+.+++..+.+ +|.++.+++.+++
T Consensus 72 ~~L~~ll~~i~~~f--~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l---~R~~~~~~~~~ai 146 (380)
T PRK09057 72 ETVAALLDAIARLW--PVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFL---GRLHSVAEALAAI 146 (380)
T ss_pred HHHHHHHHHHHHhC--CCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHH
Confidence 77888888887532 2222 268888873 222 2444544444578889999999998876 5778899999998
Q ss_pred hhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC---------Ccccccchh---
Q psy9577 251 HRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---------NLICSKNSR--- 317 (354)
Q Consensus 251 ~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~---------~~~~p~~e~--- 317 (354)
+...+. + ..+..-||-|+ ..+.++..+-.+.+..++ +.+|.+-|+.+.++. .+..|+.++
T Consensus 147 ~~~~~~--~--~~v~~dli~GlPgqt~~~~~~~l~~~~~l~---p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~ 219 (380)
T PRK09057 147 DLAREI--F--PRVSFDLIYARPGQTLAAWRAELKEALSLA---ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAAD 219 (380)
T ss_pred HHHHHh--C--ccEEEEeecCCCCCCHHHHHHHHHHHHhcC---CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHH
Confidence 866433 2 34455556663 666666655444444432 467777787776653 344566553
Q ss_pred -HHHHHHHHhhCcee
Q psy9577 318 -IKIFAKILMNSGIF 331 (354)
Q Consensus 318 -l~~f~~~l~~~gi~ 331 (354)
.....+.|.+.|+.
T Consensus 220 ~~~~~~~~L~~~G~~ 234 (380)
T PRK09057 220 LYELTQEITAAAGLP 234 (380)
T ss_pred HHHHHHHHHHHcCCc
Confidence 44556667777863
No 134
>PRK01254 hypothetical protein; Provisional
Probab=98.12 E-value=6.3e-06 Score=86.07 Aligned_cols=172 Identities=15% Similarity=0.219 Sum_probs=103.5
Q ss_pred ceeEEeccccceEeeeeecCCCC-cc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeee---------eecc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ-GF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIV---------MMGM 167 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~-g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vv---------f~Gm 167 (354)
...-|.++.||+.+|.||+.... |. .+.-+.++|++++....... ....+++ +-|+
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~-------------pGfKgii~DLgGptaN~YG~ 438 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKV-------------PGFTGVISDLGGPTANMYRL 438 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhC-------------CCcEEEEeccCCCccccccc
Confidence 34667788999999999998743 32 46778999999987654311 0122233 2232
Q ss_pred --Cc----------------cccc----cccccceeeeeeccccccccceeEEeecccch-------h-chHhhhhcC-c
Q psy9577 168 --GE----------------PLLN----YKSTIGALKLILSDHAYGLSRRHVILSTSGII-------P-MIDKLAQEC-P 216 (354)
Q Consensus 168 --GE----------------Plln----~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~-------p-~i~~l~~~~-~ 216 (354)
.. |--| ...+.++++.+++..|+ +++-|.+ |+. + .++.+++.. .
T Consensus 439 ~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGV----KkVrI~S-giR~Dl~l~d~elIeel~~~hV~ 513 (707)
T PRK01254 439 RCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGI----KKILIAS-GVRYDLAVEDPRYVKELVTHHVG 513 (707)
T ss_pred cccccccccccccccccCcccccccCCCHHHHHHHHHHHHhCCCc----eEEEEEc-CCCccccccCHHHHHHHHHhCCc
Confidence 01 1111 13456677777654465 3666644 432 1 133343321 1
Q ss_pred ceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCc
Q psy9577 217 VELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNK 290 (354)
Q Consensus 217 ~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~ 290 (354)
-.|-|-+.+.+++.=+. |.-...+..++..+.++++.+..+ ..+.+...+|=| -+++++|+.+|++|+++++
T Consensus 514 g~LkVppEH~Sd~VLk~-M~Kp~~~~~e~F~e~f~rirk~~g-k~q~LipyfIvGhPGeTeeDf~eLaefLkel~ 586 (707)
T PRK01254 514 GYLKIAPEHTEEGPLSK-MMKPGMGSYDRFKELFDKYSKEAG-KEQYLIPYFISAHPGTTDEDMVNLALWLKKNR 586 (707)
T ss_pred cccccccccCCHHHHHH-hCCCCcccHHHHHHHHHHHHHHCC-CCeEEEEeEEEECCCCCHHHHHHHHHHHHHhC
Confidence 13556688888777654 432222567788888777766653 456665445555 8899999999999999855
No 135
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=98.10 E-value=2.8e-05 Score=79.11 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=126.8
Q ss_pred eeEEeccccceEeeeeecCCCCcccc---cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-ccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVR---NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NYK 175 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r---~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~~ 175 (354)
++.|-. .-|+..|.||.-.+....+ .-.++.+++++........ .+...++.|-| |.|-|++ +.+
T Consensus 63 ~lYiHI-PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~---------~~~~~i~~iy~-GGGTPs~L~~~ 131 (449)
T PRK09058 63 LLYIHI-PFCRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPL---------TQSAPIHAVYF-GGGTPTALSAE 131 (449)
T ss_pred EEEEEe-CCcCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccc---------cCCCeeeEEEE-CCCccccCCHH
Confidence 344443 4599999999743221111 1134555555543222100 01135766666 5599995 667
Q ss_pred cccceeeeeeccccccccceeEEeecc--cchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 176 STIGALKLILSDHAYGLSRRHVILSTS--GIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 176 ~v~~~l~~l~~~~g~~~~~r~itvsT~--G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
.+.++++.+++...+.. ...+|++++ .+.+. ++.+.+.+...|.+-+.+.+++..+.+ +|..+.++++++++.
T Consensus 132 ~l~~ll~~i~~~~~l~~-~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~~~~~~~i~~ 207 (449)
T PRK09058 132 DLARLITALREYLPLAP-DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDREEVLARLEE 207 (449)
T ss_pred HHHHHHHHHHHhCCCCC-CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCHHHHHHHHHH
Confidence 77777777765332211 135888875 23332 444444444568889999999999886 567788999999987
Q ss_pred hhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC---------cccc-cchhH---
Q psy9577 253 YITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN---------LICS-KNSRI--- 318 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~---------~~~p-~~e~l--- 318 (354)
..+.. ...| ..-+|=| -+.+.++..+-.+++..++ +.+|.+-++.+.++.+ +..| +.++.
T Consensus 208 l~~~g-~~~v--~~DlI~GlPgqT~e~~~~~l~~~~~l~---~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~m 281 (449)
T PRK09058 208 LVARD-RAAV--VCDLIFGLPGQTPEIWQQDLAIVRDLG---LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADM 281 (449)
T ss_pred HHhCC-CCcE--EEEEEeeCCCCCHHHHHHHHHHHHhcC---CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHH
Confidence 76442 2234 4434433 4667788888888887743 4678888888877653 2334 44433
Q ss_pred -HHHHHHHhhCcee
Q psy9577 319 -KIFAKILMNSGIF 331 (354)
Q Consensus 319 -~~f~~~l~~~gi~ 331 (354)
+...+.|.++|+.
T Consensus 282 y~~~~~~L~~~Gy~ 295 (449)
T PRK09058 282 YAYGVEFLAKAGWR 295 (449)
T ss_pred HHHHHHHHHHCCCe
Confidence 3345667788864
No 136
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=98.09 E-value=1.1e-05 Score=81.69 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=107.0
Q ss_pred eeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~ 179 (354)
...|.++.||+.+|.||..+.....|..+.+.+++++....+.+... ......-+|...+..+.+ +...+
T Consensus 199 ~~~ve~~RGCp~~C~FC~~~~~~~~r~~~~~~v~~ei~~~~~~~~~~---------~~~~~~~~f~~~~~~~~~-~~~~~ 268 (490)
T COG1032 199 AFSVETSRGCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKR---------VVFFVDDIFLYGSPALND-EKRFE 268 (490)
T ss_pred EEEEEeccCCCCCCCCCCCcccccccCCCHHHHHHHHHHHHHHhhhc---------CcccccceeecCCccccc-hhhcc
Confidence 58888899999999999988653246777888888777543322211 011222344442332333 33333
Q ss_pred eee-eeecccccc-ccceeEEeecc--cch--hchHhhhhcC-cceeEEeeccCcccccccceeCCCcCchHHHHH-HHh
Q psy9577 180 ALK-LILSDHAYG-LSRRHVILSTS--GII--PMIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKKYPLKELIL-ACH 251 (354)
Q Consensus 180 ~l~-~l~~~~g~~-~~~r~itvsT~--G~~--p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~-~l~ 251 (354)
.+. .+.+ .++. ...-+++++.. -.+ ..+.+++++. -..+.+-+.+.+++..+.+. +.+..+++++ +++
T Consensus 269 ~l~~~~~~-~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~---k~~~~~~~~~~a~~ 344 (490)
T COG1032 269 LLSLELIE-RGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKIN---KGITTEEVLEEAVK 344 (490)
T ss_pred cchHHHHH-HhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHh---CCCChHHHHHHHHH
Confidence 333 2332 2220 01113444310 011 2233344443 35688899999999999864 5677888885 666
Q ss_pred hhhccCCCceeeeeee-eccCCCCchHHHHHH---HHHhhcCccccceeeeeeeCCCCCCCCcc
Q psy9577 252 RYITYSPRHMITFEYC-MLHGINDTDIHAIEL---ISLMRKNKILTSCKINLIPFNCFPNSNLI 311 (354)
Q Consensus 252 ~~~~~~~~~~v~ieyv-lI~GvNDs~ed~~~L---a~ll~~~~~~~~~~vnLIp~n~~~~~~~~ 311 (354)
...+ . +.++.+-++ =+||-++ +|.++. +++++..+. ...+...+|.|.++.++.
T Consensus 345 ~~~~-~-~~~~~~~~i~G~pget~--ed~~~t~~~~~~~~~~~~--~~~~~~~~~~p~p~t~~~ 402 (490)
T COG1032 345 IAKE-H-GLRVKLYFIVGLPGETE--EDVKETIELAKFIKKLGP--KLYVSPSPFVPLPGTPLQ 402 (490)
T ss_pred HHHh-C-CceeeEEEEEcCCCCCH--HHHHHHHHHHHHHHHhCc--cceEEEeeeeCCCCCchh
Confidence 5443 3 234443333 3555544 566555 777777441 135778889998876543
No 137
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.08 E-value=1.9e-05 Score=80.46 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=130.6
Q ss_pred cccceEeeeeecCCCC--cc-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc--cccccccccce
Q psy9577 106 QVGCAINCIFCSTGRQ--GF-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE--PLLNYKSTIGA 180 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~--g~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE--Plln~~~v~~~ 180 (354)
...|.-+|.||.-... .. ...|+.+||++++...... .++.+.+.| || |-...+.+.++
T Consensus 91 SN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~---------------G~~~i~Lvs-Ge~p~~~~~eyi~e~ 154 (469)
T PRK09613 91 SNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDM---------------GHKRLALVA-GEDPPNCDIEYILES 154 (469)
T ss_pred cCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHC---------------CCCEEEEEe-CCCCCCCCHHHHHHH
Confidence 3789999999975421 12 2458999999998765331 245566666 55 33446788888
Q ss_pred eeeeecc---ccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhc
Q psy9577 181 LKLILSD---HAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255 (354)
Q Consensus 181 l~~l~~~---~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~ 255 (354)
++.+++. .|. .+.++|+ .|... .+++|.+.+...+.+-..+.++++++++.|...+.+++.=+++++...+
T Consensus 155 i~~I~~~~~~~g~---i~~v~in-ig~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~ 230 (469)
T PRK09613 155 IKTIYSTKHGNGE---IRRVNVN-IAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAME 230 (469)
T ss_pred HHHHHHhccccCc---ceeeEEE-eecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 8888752 221 1356664 35332 3666666655567788888999999999986667788998999988764
Q ss_pred cCCCce-eeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeee---CCCCCCCCc-cc---ccchhHHHHHHHHh-
Q psy9577 256 YSPRHM-ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP---FNCFPNSNL-IC---SKNSRIKIFAKILM- 326 (354)
Q Consensus 256 ~~~~~~-v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp---~n~~~~~~~-~~---p~~e~l~~f~~~l~- 326 (354)
. |.+ |. .=+|=|+.|+.+|.-.++..++.+.......++-|| ++|.++.++ .+ .+++++.++..+++
T Consensus 231 a--Gi~~Vg--~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL 306 (469)
T PRK09613 231 A--GIDDVG--IGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRL 306 (469)
T ss_pred c--CCCeeC--eEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHH
Confidence 4 333 44 345668999988887776655553100111122233 567677655 22 35566666666654
Q ss_pred ---hCceeEEEec
Q psy9577 327 ---NSGIFVTIRK 336 (354)
Q Consensus 327 ---~~gi~v~ir~ 336 (354)
..|+.+.-|-
T Consensus 307 ~~P~~~I~lStRE 319 (469)
T PRK09613 307 AVPYTGMILSTRE 319 (469)
T ss_pred HCCCCCceeecCC
Confidence 3566666554
No 138
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=98.07 E-value=5.2e-05 Score=75.84 Aligned_cols=207 Identities=13% Similarity=0.112 Sum_probs=118.7
Q ss_pred ceeEEeccccceEeeeeecCCCCcccccchhhhhh----hheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-cc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEII----GQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LN 173 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv----~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln 173 (354)
.++.|-. .-|.-.|.||.-......+ ...+.-+ .++......+. +..++.|-|.| |.|+ +.
T Consensus 12 ~~lYiHi-PFC~~~C~yC~f~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~-----------~~~i~tiy~GG-GTPs~l~ 77 (390)
T PRK06582 12 LSIYIHW-PFCLSKCPYCDFNSHVAST-IDHNQWLKSYEKEIEYFKDIIQ-----------NKYIKSIFFGG-GTPSLMN 77 (390)
T ss_pred eEEEEEe-CCCcCcCCCCCCeeccCCC-CCHHHHHHHHHHHHHHHHHHcc-----------CCceeEEEECC-CccccCC
Confidence 3455554 6799999999754321111 1122222 22222111111 13577777755 9994 56
Q ss_pred cccccceeeeeeccccccccceeEEeecccc--hh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHH
Q psy9577 174 YKSTIGALKLILSDHAYGLSRRHVILSTSGI--IP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILAC 250 (354)
Q Consensus 174 ~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~--~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l 250 (354)
.+.+.++++.+++..++. +...||+++|.- .+ .++.+.+.+...|.+.+.+.+++..+.+ ++.++.+++++++
T Consensus 78 ~~~l~~ll~~i~~~~~~~-~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l---gR~h~~~~~~~ai 153 (390)
T PRK06582 78 PVIVEGIINKISNLAIID-NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKL---GRTHDCMQAIKTI 153 (390)
T ss_pred HHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHc---CCCCCHHHHHHHH
Confidence 677777777776522221 123699999862 22 2444444444578999999999888775 5678889999998
Q ss_pred hhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC---------CcccccchhHH-
Q psy9577 251 HRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---------NLICSKNSRIK- 319 (354)
Q Consensus 251 ~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~---------~~~~p~~e~l~- 319 (354)
+...+. ...| ..-||-|+ +.+.++..+=++.+..++ +.+|.+-++...++. .+..|+.++..
T Consensus 154 ~~~~~~--~~~v--~~DlI~GlPgqt~e~~~~~l~~~~~l~---p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~ 226 (390)
T PRK06582 154 EAANTI--FPRV--SFDLIYARSGQTLKDWQEELKQAMQLA---TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAE 226 (390)
T ss_pred HHHHHh--CCcE--EEEeecCCCCCCHHHHHHHHHHHHhcC---CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHH
Confidence 876432 2234 33344443 234455655444444432 467777777665543 34456655543
Q ss_pred ---HHHHHHhhCce
Q psy9577 320 ---IFAKILMNSGI 330 (354)
Q Consensus 320 ---~f~~~l~~~gi 330 (354)
...+.|.++|+
T Consensus 227 ~~~~~~~~L~~~Gy 240 (390)
T PRK06582 227 MYEWTNHYLESKKY 240 (390)
T ss_pred HHHHHHHHHHHcCC
Confidence 34556777775
No 139
>PRK05927 hypothetical protein; Provisional
Probab=98.07 E-value=5.7e-06 Score=81.51 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=116.5
Q ss_pred cccceEeeeeecCCCCc--cc-ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcc-cccccccccee
Q psy9577 106 QVGCAINCIFCSTGRQG--FV-RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP-LLNYKSTIGAL 181 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g--~~-r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEP-lln~~~v~~~l 181 (354)
+..|+.+|.||+-.... .. ..|+.+||++.+..+... .++.|.|.| |+. -.-++.+.+++
T Consensus 52 Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~---------------G~~~i~i~g-G~~p~~~~e~~~~~i 115 (350)
T PRK05927 52 TNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSA---------------GVKTVLLQG-GVHPQLGIDYLEELV 115 (350)
T ss_pred chhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHC---------------CCCEEEEeC-CCCCCCCHHHHHHHH
Confidence 46899999999864321 12 268999999998765431 245678887 774 35567888899
Q ss_pred eeeeccc-cccc---cceeEE--eecccchhc--hHhhhhcCcceeE-EeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 182 KLILSDH-AYGL---SRRHVI--LSTSGIIPM--IDKLAQECPVELA-VSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 182 ~~l~~~~-g~~~---~~r~it--vsT~G~~p~--i~~l~~~~~~~La-iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+.+++.. ++.+ ++-.+. -.++|.... +.+|.+.+...+. --+...+++.|+.+.| .+++.++=++.++.
T Consensus 116 ~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p--~k~~~~~rl~~i~~ 193 (350)
T PRK05927 116 RITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISP--KKMGPDGWIQFHKL 193 (350)
T ss_pred HHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCC--CCCCHHHHHHHHHH
Confidence 9888642 2310 000000 122476532 4455444221121 1344567788888876 34555676777765
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC-CCc----c-cccchhHHHHHHHHh
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN-SNL----I-CSKNSRIKIFAKILM 326 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~-~~~----~-~p~~e~l~~f~~~l~ 326 (354)
..+. .+.+...+|=|.-++.+|.-+.+..+++++...+.-.++||+.+.++ .++ . +++.++..+...+.+
T Consensus 194 A~~l----Gi~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~R 269 (350)
T PRK05927 194 AHRL----GFRSTATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVAR 269 (350)
T ss_pred HHHc----CCCcCceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 5322 35566677778889988888888888875422344445566533221 221 1 456666665555543
No 140
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=98.02 E-value=4.7e-05 Score=75.14 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=124.9
Q ss_pred eeEEeccccceEeeeeecCCCCcccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-ccc
Q psy9577 100 TLCISTQVGCAINCIFCSTGRQGFVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-NYK 175 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~~g~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-n~~ 175 (354)
++.|-. .-|+..|.||.-... ..... -.+..++++....+.+. +..++.|-| |.|-|++ +.+
T Consensus 8 ~lYiHi-PFC~~kC~yC~f~~~-~~~~~~~~~~~~~~~~l~~ei~~~~-----------~~~~~tiy~-GGGTPs~L~~~ 73 (353)
T PRK05904 8 HLYIHI-PFCQYICTFCDFKRI-LKTPQTKKIFKDFLKNIKMHIKNFK-----------IKQFKTIYL-GGGTPNCLNDQ 73 (353)
T ss_pred EEEEEe-CCccCcCCCCCCeec-cCCcccHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEE-CCCccccCCHH
Confidence 444443 459999999986543 11110 12233344333222221 134666666 5599975 667
Q ss_pred cccceeeeeeccccccccceeEEeecccc--hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 176 STIGALKLILSDHAYGLSRRHVILSTSGI--IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 176 ~v~~~l~~l~~~~g~~~~~r~itvsT~G~--~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
.+.++++.+++. +. +...+|+++|.- .+. ++.+.+.+-..|.+.+.+.+++..+.+ +|.++.+++.++++.
T Consensus 74 ~l~~ll~~i~~~--~~-~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l---~R~~~~~~~~~ai~~ 147 (353)
T PRK05904 74 LLDILLSTIKPY--VD-NNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQL---NRTHTIQDSKEAINL 147 (353)
T ss_pred HHHHHHHHHHHh--cC-CCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCHHHHHHHHHH
Confidence 777777777652 21 123688988752 222 444444444468899999999998876 567889999999987
Q ss_pred hhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc----cccc----hhHHHHHH
Q psy9577 253 YITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI----CSKN----SRIKIFAK 323 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~----~p~~----e~l~~f~~ 323 (354)
+.+. +.. .+..-+|-| -+.+.+++.+..+++..++ +.++.+-++.+.++.++. .+++ +..+...+
T Consensus 148 lr~~--G~~-~v~~dlI~GlPgqt~e~~~~tl~~~~~l~---p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~ 221 (353)
T PRK05904 148 LHKN--GIY-NISCDFLYCLPILKLKDLDEVFNFILKHK---INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKA 221 (353)
T ss_pred HHHc--CCC-cEEEEEeecCCCCCHHHHHHHHHHHHhcC---CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHH
Confidence 7543 222 244434433 4678899999999998854 357777777766654321 1232 33445666
Q ss_pred HHhhCcee
Q psy9577 324 ILMNSGIF 331 (354)
Q Consensus 324 ~l~~~gi~ 331 (354)
.|++.|+.
T Consensus 222 ~L~~~Gy~ 229 (353)
T PRK05904 222 KFNKLNYK 229 (353)
T ss_pred HHHHcCCc
Confidence 78888864
No 141
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=97.94 E-value=5.1e-05 Score=76.90 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=112.9
Q ss_pred ccceEeeeeecCCCCcccccc---hhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeee
Q psy9577 107 VGCAINCIFCSTGRQGFVRNL---TVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKL 183 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~l---t~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~ 183 (354)
.-|+..|.||.-......... -.+.+.+++.... +. +.+++.|-| |.|-|++..+.+.++++.
T Consensus 60 PFC~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~----~~---------~~~~~siy~-GGGTPs~l~~~L~~ll~~ 125 (433)
T PRK08629 60 PFCHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVK----EL---------GYDFESMYV-GGGTTTILEDELAKTLEL 125 (433)
T ss_pred CCccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHH----hc---------CCceEEEEE-CCCccccCHHHHHHHHHH
Confidence 459999999986543222211 1344555544321 11 235666666 559999877777788887
Q ss_pred eeccccccccceeEEeecc--cchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCc
Q psy9577 184 ILSDHAYGLSRRHVILSTS--GIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRH 260 (354)
Q Consensus 184 l~~~~g~~~~~r~itvsT~--G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~ 260 (354)
+++..++ ..++++++ .+.+. ++.+.+. -..+.+-+-+.|++..+.+-..++..+.+++++.++..... ..
T Consensus 126 i~~~f~i----~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~--~~ 198 (433)
T PRK08629 126 AKKLFSI----KEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGL--FP 198 (433)
T ss_pred HHHhCCC----ceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhcc--CC
Confidence 7753332 36888775 23333 4333333 33688889999999888763322222345556666553221 12
Q ss_pred eeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC------cccccchhHHHHHHHH
Q psy9577 261 MITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN------LICSKNSRIKIFAKIL 325 (354)
Q Consensus 261 ~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~------~~~p~~e~l~~f~~~l 325 (354)
. +..-+|=| -+.+.+++.+-.+++..++ +.+|.+-|+...++.. ...|+.+....+.++.
T Consensus 199 ~--v~~DlI~GlPgqT~e~~~~~l~~~~~l~---p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~ 265 (433)
T PRK08629 199 I--INVDLIFNFPGQTDEVLQHDLDIAKRLD---PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQII 265 (433)
T ss_pred e--EEEEEEccCCCCCHHHHHHHHHHHHhCC---CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHH
Confidence 2 34444433 4567889999889888853 4778888887655432 3346655555555543
No 142
>PRK05926 hypothetical protein; Provisional
Probab=97.94 E-value=1.5e-05 Score=79.15 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=106.0
Q ss_pred cccceEeeeeecCCCC-cc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-ccccccccee
Q psy9577 106 QVGCAINCIFCSTGRQ-GF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKSTIGAL 181 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~-g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln~~~v~~~l 181 (354)
+..|..+|.||+-... +- ...++++||++.+..+ . . .++.|.+.| |+.. +.++.+.+++
T Consensus 75 Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~-~--------------G~~ei~iv~-G~~p~~~~e~~~e~i 137 (370)
T PRK05926 75 TNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-P-S--------------PITETHIVA-GCFPSCNLAYYEELF 137 (370)
T ss_pred CCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-h-c--------------CCCEEEEEe-CcCCCCCHHHHHHHH
Confidence 5789999999995431 11 2347899999998764 2 1 145677777 6643 4567888889
Q ss_pred eeeeccc-cccccceeEEeecc----------cch-hc-hHhhhhcCcceeEE-eeccCcccccccceeCCCcCchHHHH
Q psy9577 182 KLILSDH-AYGLSRRHVILSTS----------GII-PM-IDKLAQECPVELAV-SLHASNNNLRNKLVPISKKYPLKELI 247 (354)
Q Consensus 182 ~~l~~~~-g~~~~~r~itvsT~----------G~~-p~-i~~l~~~~~~~Lai-SL~a~~~e~r~~l~p~~~~~~l~~il 247 (354)
+.+++.. ++ ++..+|. |.. .. +++|.+.+-..+.- -....+++.|+.+.| ++.+.++-+
T Consensus 138 ~~Ik~~~p~i-----~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p--~~~t~~e~l 210 (370)
T PRK05926 138 SKIKQNFPDL-----HIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAP--GRLSSQGFL 210 (370)
T ss_pred HHHHHhCCCe-----eEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCC--CCCCHHHHH
Confidence 8888742 34 5554442 222 11 44444433222221 234458889998887 455678788
Q ss_pred HHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeee
Q psy9577 248 LACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301 (354)
Q Consensus 248 ~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp 301 (354)
+.++...+. | +.+...+|=|.-.+.+|.-+.+..+++++.+...-..+||
T Consensus 211 ~~i~~a~~~--G--i~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp 260 (370)
T PRK05926 211 EIHKTAHSL--G--IPSNATMLCYHRETPEDIVTHMSKLRALQDKTSGFKNFIL 260 (370)
T ss_pred HHHHHHHHc--C--CcccCceEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeEe
Confidence 888866433 3 4444557889999999999988889886532333345565
No 143
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.80 E-value=7.2e-05 Score=81.32 Aligned_cols=202 Identities=16% Similarity=0.180 Sum_probs=118.4
Q ss_pred CceeEEe----ccccceEeeeeecCCCCc---ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-
Q psy9577 98 RNTLCIS----TQVGCAINCIFCSTGRQG---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE- 169 (354)
Q Consensus 98 r~tlcvS----sq~GC~~~C~fC~tg~~g---~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE- 169 (354)
..+.++. .+..|..+|.||+-.+.. -...|+.+||++++..+... .++.|.+.| |+
T Consensus 521 ~Vt~vvn~~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~---------------G~tev~i~g-G~~ 584 (843)
T PRK09234 521 DVTYVVNRNINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVA---------------GATEVCMQG-GIH 584 (843)
T ss_pred eEEEEEeeceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHC---------------CCCEEEEec-CCC
Confidence 3454443 468999999999865321 13458999999998865441 256678877 65
Q ss_pred cccccccccceeeeeeccc-cccccceeEEee----------cccchh--chHhhhhcCcceeEE-eeccCcccccccce
Q psy9577 170 PLLNYKSTIGALKLILSDH-AYGLSRRHVILS----------TSGIIP--MIDKLAQECPVELAV-SLHASNNNLRNKLV 235 (354)
Q Consensus 170 Plln~~~v~~~l~~l~~~~-g~~~~~r~itvs----------T~G~~p--~i~~l~~~~~~~Lai-SL~a~~~e~r~~l~ 235 (354)
|-...+.+.++++.+++.. ++ ++... +.|+.. .+.+|.+.+-..+-- +=...+++.|+.+.
T Consensus 585 p~~~~~~y~~lir~IK~~~p~i-----~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~ 659 (843)
T PRK09234 585 PELPGTGYADLVRAVKARVPSM-----HVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLT 659 (843)
T ss_pred CCcCHHHHHHHHHHHHHhCCCe-----eEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcC
Confidence 5456677888899888732 23 55332 235532 244555443222211 11234667888888
Q ss_pred eCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCC--CCCC------
Q psy9577 236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFN--CFPN------ 307 (354)
Q Consensus 236 p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n--~~~~------ 307 (354)
| .+.+.++-++.++...+. | +.+...+|=|.-++.+|..+.+.++++++.....-..+||+| +...
T Consensus 660 p--~k~~~~~wle~i~~Ah~l--G--i~~~stmm~G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~ 733 (843)
T PRK09234 660 K--GKLPTAEWIEVVTTAHEV--G--LRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAG 733 (843)
T ss_pred C--CCCCHHHHHHHHHHHHHc--C--CCcccceEEcCCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCccccc
Confidence 7 244555556666654332 3 444555666788999999999999998542122224455543 2211
Q ss_pred CCcccccchhHHHHHHHHh
Q psy9577 308 SNLICSKNSRIKIFAKILM 326 (354)
Q Consensus 308 ~~~~~p~~e~l~~f~~~l~ 326 (354)
.....++..+..+...+.+
T Consensus 734 ~~~~~~t~~e~Lr~iAvaR 752 (843)
T PRK09234 734 AARPGPTHRENRAVHALAR 752 (843)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 1123456566555555443
No 144
>PTZ00413 lipoate synthase; Provisional
Probab=97.80 E-value=0.00014 Score=71.71 Aligned_cols=195 Identities=11% Similarity=0.159 Sum_probs=121.1
Q ss_pred ccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEe-eeeeccCccccc--cccccceeee
Q psy9577 107 VGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITN-IVMMGMGEPLLN--YKSTIGALKL 183 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~-Vvf~GmGEPlln--~~~v~~~l~~ 183 (354)
..|.-+|.||+-....-...++++|+++....+... .++. |+-+|-+..|-. .+.+.++++.
T Consensus 157 ~~CTr~C~FCaqstg~~p~~lD~eEp~~vA~av~~~---------------Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~ 221 (398)
T PTZ00413 157 DHCTRGCRFCSVKTSRKPPPLDPNEPEKVAKAVAEM---------------GVDYIVMTMVDRDDLPDGGASHVARCVEL 221 (398)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc---------------CCCEEEEEEEcCCCCChhhHHHHHHHHHH
Confidence 469999999997642213567899999887755431 1223 444443444443 3567777887
Q ss_pred eeccc-cccccceeEEeec---ccchhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCC
Q psy9577 184 ILSDH-AYGLSRRHVILST---SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259 (354)
Q Consensus 184 l~~~~-g~~~~~r~itvsT---~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~ 259 (354)
+++.. ++ .|.+++ -|-...+++|.+.....++--|.+ .+..+.++.. ...++++-++.++...+...
T Consensus 222 Ir~~~p~~-----~IevligDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt--~~atYe~sLe~Lr~AKe~f~- 292 (398)
T PTZ00413 222 IKESNPEL-----LLEALVGDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRD--RRASYRQSLKVLEHVKEFTN- 292 (398)
T ss_pred HHccCCCC-----eEEEcCCccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHcc--CcCCHHHHHHHHHHHHHHhc-
Confidence 87632 34 566655 222334666666654445555665 3456655541 13578899998886654311
Q ss_pred ceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCC----C----CCCcccccchhHHHHHHHHhhCcee
Q psy9577 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF----P----NSNLICSKNSRIKIFAKILMNSGIF 331 (354)
Q Consensus 260 ~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~----~----~~~~~~p~~e~l~~f~~~l~~~gi~ 331 (354)
..+..-.-+|=|.-++++|+.+++..|+++ .|+.+|++.+ . -..|- ++++.+.++++..+.|+.
T Consensus 293 ~gi~tcSGiIVGLGET~eEvie~m~dLrel------GVDivtIGQYL~Ps~~h~~V~~yv--~P~~F~~~~~~a~~~Gf~ 364 (398)
T PTZ00413 293 GAMLTKSSIMLGLGETEEEVRQTLRDLRTA------GVSAVTLGQYLQPTKTRLKVSRYA--HPKEFEMWEEEAMKMGFL 364 (398)
T ss_pred CCceEeeeeEecCCCCHHHHHHHHHHHHHc------CCcEEeeccccCCCcccCCceecc--CHHHHHHHHHHHHHcCCc
Confidence 145555566678999999999999999883 3444665332 1 12333 457788888888888985
Q ss_pred EE
Q psy9577 332 VT 333 (354)
Q Consensus 332 v~ 333 (354)
..
T Consensus 365 ~v 366 (398)
T PTZ00413 365 YC 366 (398)
T ss_pred eE
Confidence 44
No 145
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=97.47 E-value=0.0005 Score=62.89 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=104.7
Q ss_pred ccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccc--cccccceeeee
Q psy9577 107 VGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLN--YKSTIGALKLI 184 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln--~~~v~~~l~~l 184 (354)
.-|.++|..|.+....-.-..|.++++...+.+.+ ....++.++|.=.|=.. ++...+.++.+
T Consensus 19 ~yC~lnC~HCg~~~L~~Mi~vt~~~l~k~~~el~k---------------kGy~g~llSGGm~srg~VPl~kf~d~lK~l 83 (275)
T COG1856 19 AYCSLNCPHCGRHYLEHMIKVTTKSLLKRCMELEK---------------KGYEGCLLSGGMDSRGKVPLWKFKDELKAL 83 (275)
T ss_pred cceEecChHHHHHHHHHhcccchHHHHHHHHHHHh---------------cCceeEEEeCCcCCCCCccHHHHHHHHHHH
Confidence 56999999997653222223355677766554332 13567888884222111 23345677888
Q ss_pred eccccccccceeEEeecccchhc--hHhhhhcCcceeEEeeccC-cccccccceeCCCcCchHHHHHHHhhhhccCCCce
Q psy9577 185 LSDHAYGLSRRHVILSTSGIIPM--IDKLAQECPVELAVSLHAS-NNNLRNKLVPISKKYPLKELILACHRYITYSPRHM 261 (354)
Q Consensus 185 ~~~~g~~~~~r~itvsT~G~~p~--i~~l~~~~~~~LaiSL~a~-~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~ 261 (354)
++..|+ .++- -.|++.. ++++.+++.+. +||+-. |++.-+++.+.++ +.++-+..++.+.+ . +.+
T Consensus 84 ke~~~l-----~ina-HvGfvdE~~~eklk~~~vdv--vsLDfvgDn~vIk~vy~l~k--sv~dyl~~l~~L~e-~-~ir 151 (275)
T COG1856 84 KERTGL-----LINA-HVGFVDESDLEKLKEELVDV--VSLDFVGDNDVIKRVYKLPK--SVEDYLRSLLLLKE-N-GIR 151 (275)
T ss_pred HHhhCe-----EEEE-EeeeccHHHHHHHHHhcCcE--EEEeecCChHHHHHHHcCCc--cHHHHHHHHHHHHH-c-Cce
Confidence 887776 4544 3488752 55666655332 455555 4455666766543 56666676765543 3 345
Q ss_pred eeeeeee---ccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhhC--c-eeEEEe
Q psy9577 262 ITFEYCM---LHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNS--G-IFVTIR 335 (354)
Q Consensus 262 v~ieyvl---I~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~--g-i~v~ir 335 (354)
|....++ -.++.- +.++ .+++.++..+...-+-|||+--.......+|+.+++-+..++.++. + +..-.-
T Consensus 152 vvpHitiGL~~gki~~---e~ka-IdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCm 227 (275)
T COG1856 152 VVPHITIGLDFGKIHG---EFKA-IDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCM 227 (275)
T ss_pred eceeEEEEeccCcccc---hHHH-HHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCCCeeEeec
Confidence 5444332 122222 2222 2445543211223444555532222234566666666666665542 2 333333
Q ss_pred ccccc
Q psy9577 336 KIRGN 340 (354)
Q Consensus 336 ~~~G~ 340 (354)
+++|.
T Consensus 228 rP~Ge 232 (275)
T COG1856 228 RPRGE 232 (275)
T ss_pred CcCch
Confidence 55554
No 146
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.47 E-value=0.0012 Score=68.48 Aligned_cols=121 Identities=7% Similarity=0.105 Sum_probs=79.3
Q ss_pred eEEeecc--cchh-chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCC
Q psy9577 196 HVILSTS--GIIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGI 272 (354)
Q Consensus 196 ~itvsT~--G~~p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~Gv 272 (354)
.+||+|. .+.+ .++.|.+.+...+.+-+.+.+++..+.+ +|.++.+++.++++...+ . + +.+.+-||.|.
T Consensus 194 gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~i---nRght~~~v~~Ai~~lr~-~-G--~~v~~~LM~GL 266 (522)
T TIGR01211 194 GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERT---KRGHTVRDVVEATRLLRD-A-G--LKVVYHIMPGL 266 (522)
T ss_pred EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHh---CCCCCHHHHHHHHHHHHH-c-C--CeEEEEeecCC
Confidence 5777774 2223 2545555555578889999999998775 678999999999987653 3 3 35666677774
Q ss_pred -CCchHHHHHHHHHhhc---CccccceeeeeeeCCCCCC---------CCcccccchhHHHHHHHHh
Q psy9577 273 -NDTDIHAIELISLMRK---NKILTSCKINLIPFNCFPN---------SNLICSKNSRIKIFAKILM 326 (354)
Q Consensus 273 -NDs~ed~~~La~ll~~---~~~~~~~~vnLIp~n~~~~---------~~~~~p~~e~l~~f~~~l~ 326 (354)
+++.++..+-++.+.. + .+..+.+-|....++ ..|++++.++..++...+.
T Consensus 267 Pgqt~e~~~~t~~~l~~~~~l---~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~ 330 (522)
T TIGR01211 267 PGSSFERDLEMFREIFEDPRF---KPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIK 330 (522)
T ss_pred CCCCHHHHHHHHHHHHhccCC---CcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6777766665555532 2 245666677666554 3577888777655544443
No 147
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=97.05 E-value=0.0052 Score=62.05 Aligned_cols=213 Identities=15% Similarity=0.187 Sum_probs=116.4
Q ss_pred ceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCc-eeEEeeeeeccCcccc-cccc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGK-RQITNIVMMGMGEPLL-NYKS 176 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg-~~i~~Vvf~GmGEPll-n~~~ 176 (354)
.++.|=. .-|.-.|.||.-...-..+.-..++.++-+.+........ .++ ..++.|-| |+|.|.+ +.+.
T Consensus 35 ~slYiHi-PFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~-------~~~~~~v~ti~~-GGGTPslL~~~~ 105 (416)
T COG0635 35 LSLYIHI-PFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAAL-------LGGQREVKTIYF-GGGTPSLLSPEQ 105 (416)
T ss_pred eEEEEEc-ccccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhh-------cCCCCeEEEEEE-CCCccccCCHHH
Confidence 3444443 5688899999765433222223333443333322222211 112 25777777 5599986 5666
Q ss_pred ccceeeeeeccccccccc-eeEEeecc-cchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 177 TIGALKLILSDHAYGLSR-RHVILSTS-GIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 177 v~~~l~~l~~~~g~~~~~-r~itvsT~-G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+..+++.+++..+ .++. .-|||+.| +.+. .++.+.+.+..++.+=+-+.+++..+.+ ++..+.++..+++..
T Consensus 106 l~~ll~~l~~~~~-~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~l---gR~h~~~~~~~a~~~ 181 (416)
T COG0635 106 LERLLKALRELFN-DLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKAL---GRIHDEEEAKEAVEL 181 (416)
T ss_pred HHHHHHHHHHhcc-cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHh---cCCCCHHHHHHHHHH
Confidence 7777777765332 1222 36888886 3222 2444444444467777999999999886 566777888888876
Q ss_pred hhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC-----c---ccccch----hHH
Q psy9577 253 YITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN-----L---ICSKNS----RIK 319 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~-----~---~~p~~e----~l~ 319 (354)
..+.. ...|.+- ||=| .+.+.+++.+-.+.+..++ +.++-+-.+.-.++.+ - ..|+.+ ..+
T Consensus 182 ~~~~g-~~~in~D--LIyglP~QT~~~~~~~l~~a~~l~---pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~ 255 (416)
T COG0635 182 ARKAG-FTSINID--LIYGLPGQTLESLKEDLEQALELG---PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYE 255 (416)
T ss_pred HHHcC-CCcEEEE--eecCCCCCCHHHHHHHHHHHHhCC---CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHH
Confidence 65432 2334333 3222 2445677777666666654 2333322222112111 1 234443 334
Q ss_pred HHHHHHhhCce
Q psy9577 320 IFAKILMNSGI 330 (354)
Q Consensus 320 ~f~~~l~~~gi 330 (354)
...+.|.++|+
T Consensus 256 ~~~e~L~~~Gy 266 (416)
T COG0635 256 LVEELLEKAGY 266 (416)
T ss_pred HHHHHHHHCCC
Confidence 55667788887
No 148
>PRK09234 fbiC FO synthase; Reviewed
Probab=96.95 E-value=0.0013 Score=71.77 Aligned_cols=191 Identities=15% Similarity=0.178 Sum_probs=109.7
Q ss_pred cccceEeeeeecCCCC-c--ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-cccc--------
Q psy9577 106 QVGCAINCIFCSTGRQ-G--FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLN-------- 173 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~-g--~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Plln-------- 173 (354)
+..|..+|.||.-... + -...|+++||++.+...... .++.+.|+| || |-..
T Consensus 78 Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~---------------G~~e~l~t~-G~~P~~~~~~~~~~l 141 (843)
T PRK09234 78 TRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAA---------------GCKEALFTL-GDRPEDRWPEAREWL 141 (843)
T ss_pred CCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHC---------------CCCEEEEec-CCCCccccccccccc
Confidence 4789999999976431 1 12358999999998765431 245678888 76 4432
Q ss_pred --------cccccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCccccccc------ceeC
Q psy9577 174 --------YKSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNK------LVPI 237 (354)
Q Consensus 174 --------~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~------l~p~ 237 (354)
.+.+.++++.+++..|+ ...+ +.|... .+.+|.+... ...+++....+..+.+ +.|
T Consensus 142 ~~~gy~~~~ey~~~~~~~ik~~~gl-----~p~i-~~G~ls~~E~~~Lk~~g~-s~gl~lEt~~~~l~~~~g~~h~~~P- 213 (843)
T PRK09234 142 DERGYDSTLDYVRAMAIRVLEETGL-----LPHL-NPGVMSWSELARLKPVAP-SMGMMLETTSRRLFEEKGGPHYGSP- 213 (843)
T ss_pred cccccccHHHHHHHHHHHHHHhcCC-----Ccee-eeCCCCHHHHHHHHHhcC-cCCCCHHHHHHHHHHhhcccccCCC-
Confidence 36777778878764454 2233 225443 2555544321 2334566555555422 222
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcccc--ceeeeeeeCCCCCCCC---ccc
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT--SCKINLIPFNCFPNSN---LIC 312 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~--~~~vnLIp~n~~~~~~---~~~ 312 (354)
. +.+-+. ++.++...+. .+.+..-+|=|+-++.+|.-+.+..++.++... ...|-+.+|.|.++.+ ..+
T Consensus 214 ~-K~~~~R-L~ti~~A~~l----Gi~~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~ 287 (843)
T PRK09234 214 D-KDPAVR-LRVLEDAGRL----SVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPD 287 (843)
T ss_pred C-CCHHHH-HHHHHHHHHc----CCCccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCC
Confidence 2 222233 5666654322 355667777799999998888888887742111 1223334566665544 345
Q ss_pred ccchhHHHHHHHHh
Q psy9577 313 SKNSRIKIFAKILM 326 (354)
Q Consensus 313 p~~e~l~~f~~~l~ 326 (354)
++.+++.+...+.+
T Consensus 288 ~s~~e~Lr~iAvaR 301 (843)
T PRK09234 288 AGLEELLATIAVAR 301 (843)
T ss_pred CCHHHHHHHHHHHH
Confidence 67777766655543
No 149
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=96.08 E-value=0.0093 Score=59.29 Aligned_cols=195 Identities=18% Similarity=0.195 Sum_probs=100.8
Q ss_pred cccceEeeeeecCCCCc---ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-ccccccccccee
Q psy9577 106 QVGCAINCIFCSTGRQG---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLNYKSTIGAL 181 (354)
Q Consensus 106 q~GC~~~C~fC~tg~~g---~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Plln~~~v~~~l 181 (354)
+.-|..+|.||+--... -...||++||.+++..... ..++.|.|.| || |-.++++..+.+
T Consensus 66 TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~---------------~G~~Evli~g-G~~p~~~~~y~~~~~ 129 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVK---------------RGITEVLIVG-GEHPELSLEYYEELF 129 (370)
T ss_pred chhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHH---------------cCCeEEEEec-CcCCCcchHHHHHHH
Confidence 46789999999754322 1346899999999876543 1367899999 66 666667778888
Q ss_pred eeeeccccccccceeEEeeccc-ch-------hc----hHhhhhcCcceeEEeecc-CcccccccceeCCCcCchHHHHH
Q psy9577 182 KLILSDHAYGLSRRHVILSTSG-II-------PM----IDKLAQECPVELAVSLHA-SNNNLRNKLVPISKKYPLKELIL 248 (354)
Q Consensus 182 ~~l~~~~g~~~~~r~itvsT~G-~~-------p~----i~~l~~~~~~~LaiSL~a-~~~e~r~~l~p~~~~~~l~~il~ 248 (354)
+.+++... .+ ++.-=|++ +. +. +++|.+.+-..+...--- .+++.|+.+.| .+.+.+.=++
T Consensus 130 ~~ik~~~p-~~---~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p--~K~~~~~wle 203 (370)
T COG1060 130 RTIKEEFP-DL---HIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCP--PKKSPEEWLE 203 (370)
T ss_pred HHHHHhCc-ch---hhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCC--CCCCHHHHHH
Confidence 88885221 11 22222222 21 11 333433321111111111 23444554543 4567777788
Q ss_pred HHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeee--CCCCCCC----CcccccchhHHHHH
Q psy9577 249 ACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP--FNCFPNS----NLICSKNSRIKIFA 322 (354)
Q Consensus 249 ~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp--~n~~~~~----~~~~p~~e~l~~f~ 322 (354)
..+...+. |.+-+ -+.|+-++.+ .+|.-.-..-++.++........+|| |.|..+. ....++..++.+..
T Consensus 204 ~~~~Ah~l--GI~~t-atml~Gh~E~-~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~i 279 (370)
T COG1060 204 IHERAHRL--GIPTT-ATMLLGHVET-REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAI 279 (370)
T ss_pred HHHHHHHc--CCCcc-ceeEEEecCC-HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHH
Confidence 88776543 23333 5566666665 44443333333322111233444555 4454332 22334545555444
Q ss_pred HHHh
Q psy9577 323 KILM 326 (354)
Q Consensus 323 ~~l~ 326 (354)
.+.+
T Consensus 280 AiaR 283 (370)
T COG1060 280 ALAR 283 (370)
T ss_pred HHHH
Confidence 4443
No 150
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=95.89 E-value=0.064 Score=54.17 Aligned_cols=134 Identities=7% Similarity=0.092 Sum_probs=78.1
Q ss_pred EEeeccc-ch--hchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCC
Q psy9577 197 VILSTSG-II--PMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGIN 273 (354)
Q Consensus 197 itvsT~G-~~--p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvN 273 (354)
+||+|== +. ..+.++.+.+...+-+-+-+.+++..++. ++.+..+++.++.+-+ +.. + .++-|-|+||.=
T Consensus 187 itiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~---~RGHtvedv~~a~rLl-Kd~-G--fKv~~HiMpGLP 259 (515)
T COG1243 187 ITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERT---KRGHTVEDVVEATRLL-KDA-G--FKVGYHIMPGLP 259 (515)
T ss_pred EEEecCccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHh---cCCccHHHHHHHHHHH-Hhc-C--cEEEEEecCCCC
Confidence 8898832 11 12556666655567778888888877663 6789999999999854 344 3 556666777764
Q ss_pred --CchHHHHHHHHHhhcCccccceeeeeeeCCCC---C---------CCCcccccchhHHHHHHHHhhCceeEEEec-cc
Q psy9577 274 --DTDIHAIELISLMRKNKILTSCKINLIPFNCF---P---------NSNLICSKNSRIKIFAKILMNSGIFVTIRK-IR 338 (354)
Q Consensus 274 --Ds~ed~~~La~ll~~~~~~~~~~vnLIp~n~~---~---------~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~-~~ 338 (354)
|-+-|++..-+++.. ...+.+.+-..|. . ...|++-+.|+.-++...+... ++--+|. .-
T Consensus 260 gs~~erDl~~f~~~f~~----p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~~~-~p~wvRV~RI 334 (515)
T COG1243 260 GSDFERDLESFREIFED----PRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIYRL-EPKWVRVIRI 334 (515)
T ss_pred CCChHHHHHHHHHHHhC----CCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHHHHHh-cCCCcEEEEe
Confidence 225567666666665 3233333333332 2 2468887776655444443321 2222332 33
Q ss_pred ccch
Q psy9577 339 GNDI 342 (354)
Q Consensus 339 G~di 342 (354)
|+||
T Consensus 335 qrdI 338 (515)
T COG1243 335 QRDI 338 (515)
T ss_pred ccCC
Confidence 6666
No 151
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=95.39 E-value=0.027 Score=54.27 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=101.8
Q ss_pred eeeeccCccccccccccceeeeeeccccccccceeEEeec----ccchhchHhhhhcCcceeEEeeccCcccccccc-ee
Q psy9577 162 IVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST----SGIIPMIDKLAQECPVELAVSLHASNNNLRNKL-VP 236 (354)
Q Consensus 162 Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT----~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l-~p 236 (354)
|.+.=.-+|=.+ ..+...++.++-+.|. .|+||- +++.+.+....+.....+.|-++|++++.++++ ++
T Consensus 90 ici~~i~~p~~~-~d~~~i~~~~~~~~~~-----~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~ 163 (339)
T COG2516 90 ICIQQIAYPRAL-NDLKLILERLHIRLGD-----PITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKT 163 (339)
T ss_pred ccceeecccccc-chhhhhhhhhhhccCC-----ceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhc
Confidence 344333445555 4455555555533454 466652 344444444333333457788999999999999 55
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC---Ccccc
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---NLICS 313 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~---~~~~p 313 (354)
.+-.++++.-++.+.+.+...++.+|.+.. |=|.-.|++++-+....+.. ....|.|--|-|..+. +..+|
T Consensus 164 s~s~~S~e~~~~~l~~~~~~~~k~rv~ihl--iVglGesD~~~ve~~~~v~~----~g~~v~Lfaf~P~~gt~me~r~~~ 237 (339)
T COG2516 164 SGSPHSWERYWEFLEKVAEAFGKGRVGIHL--IVGLGESDKDIVETIKRVRK----RGGIVSLFAFTPLKGTQMENRKPP 237 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHHhccCCcceeE--EeccCCchHHHHHHHHHHHh----cCceEEEEEecccccccccCCCCC
Confidence 444567888888777776655434566554 44456667787777777766 4578888999987654 34566
Q ss_pred cchhHHHHH--HHHhhCce---eEEEecccccchh
Q psy9577 314 KNSRIKIFA--KILMNSGI---FVTIRKIRGNDIN 343 (354)
Q Consensus 314 ~~e~l~~f~--~~l~~~gi---~v~ir~~~G~di~ 343 (354)
+.+...+.+ .+|-..|. .+...+++|+=|+
T Consensus 238 pve~Yrk~q~a~yli~~G~v~~~~~~fde~g~lI~ 272 (339)
T COG2516 238 PVERYRKIQVARYLIGNGEVDLEDFEFDEFGNLID 272 (339)
T ss_pred cHHHHHHHHHHHHHHhcCccchhhcccccccceec
Confidence 655544332 24555553 3444456666554
No 152
>KOG1160|consensus
Probab=95.30 E-value=0.018 Score=57.59 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=94.3
Q ss_pred eEEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCccccccccee
Q psy9577 158 QITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVP 236 (354)
Q Consensus 158 ~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p 236 (354)
.+.+-.++=.|||-+. +.+-..++.|++ ..+ .--+-||...|. +..+.+ ...|.+|+++++...-..+-.
T Consensus 353 evrhcalslVgepi~y-p~in~f~k~lH~-k~i-----ssflvtnaq~pe~~rnvk~--vtqlyvsvda~Tktslk~idr 423 (601)
T KOG1160|consen 353 EVRHCALSLVGEPIMY-PEINPFAKLLHQ-KLI-----SSFLVTNAQFPEDIRNVKP--VTQLYVSVDASTKTSLKKIDR 423 (601)
T ss_pred hhhhheeeeecccccc-hhhhHHHHHHHh-ccc-----hHHhcccccChHHHhchhh--hheeEEEEeecchhhhcCCCC
Confidence 3444445555899985 788889999987 444 333557777664 333322 235789999998777666532
Q ss_pred CCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc------
Q psy9577 237 ISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL------ 310 (354)
Q Consensus 237 ~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~------ 310 (354)
+--++=+|.+++.++...++. .+-.+|..|++|.|.+ |..+-+++++. + ++..+.+.-..-.+.+..
T Consensus 424 PlfkdFwEr~~d~l~~lk~K~--qrtvyRlTlVkg~n~d--d~~Ayfnlv~r-g--lp~fieVkGvty~ges~~s~lTm~ 496 (601)
T KOG1160|consen 424 PLFKDFWERFLDSLKALKKKQ--QRTVYRLTLVKGWNSD--DLPAYFNLVSR-G--LPDFIEVKGVTYCGESELSNLTMT 496 (601)
T ss_pred chHHHHHHHHHHHHHHHHHhh--cceEEEEEEecccccc--ccHHHHHHHhc-c--CCceEEEeceeEecccccCccccc
Confidence 222333666777776655443 4778899999999985 67777777653 2 444444443222222221
Q ss_pred ccccchhHHHHHHHHhh
Q psy9577 311 ICSKNSRIKIFAKILMN 327 (354)
Q Consensus 311 ~~p~~e~l~~f~~~l~~ 327 (354)
..|..|++-+|...|..
T Consensus 497 nvp~~Ee~v~Fv~eL~~ 513 (601)
T KOG1160|consen 497 NVPWHEEVVEFVFELVD 513 (601)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 23556777777777633
No 153
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.22 E-value=0.18 Score=48.83 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=95.0
Q ss_pred ceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccc-----cceeee
Q psy9577 109 CAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST-----IGALKL 183 (354)
Q Consensus 109 C~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v-----~~~l~~ 183 (354)
|..+|.+|.-...+-+..++.++|+.|+..+...++.. +.+..-.|--+| -+++...| ...++.
T Consensus 61 ~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~--------~~~~~vkIFTSG---SFLD~~EVP~e~R~~Il~~ 129 (358)
T COG1244 61 REGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGK--------FDEFVVKIFTSG---SFLDPEEVPREARRYILER 129 (358)
T ss_pred ccCCcceeccccccCCCCCCHHHHHHHHHHHHHHhccc--------CCCceEEEEccc---ccCChhhCCHHHHHHHHHH
Confidence 34558888665544468899999999999887766521 112222333334 56665443 345555
Q ss_pred eeccccccccceeEEeeccc-chh--chHhhhhc---CcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 184 ILSDHAYGLSRRHVILSTSG-IIP--MIDKLAQE---CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 184 l~~~~g~~~~~r~itvsT~G-~~p--~i~~l~~~---~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
+.+...+ .++.|+|=- ++. .++.+.+. ..+.++|-|.+.|+++|..- +|+.+++++.++++.... ..
T Consensus 130 is~~~~v----~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~s--INKGftF~df~~A~~~ir-~~ 202 (358)
T COG1244 130 ISENDNV----KEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDS--INKGFTFEDFVRAAEIIR-NY 202 (358)
T ss_pred Hhhccce----eEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHh--hhcCCcHHHHHHHHHHHH-Hc
Confidence 6553223 368887732 221 23444433 24678999999999999654 589999999999998765 44
Q ss_pred CCceeeeeeeeccCCCCchHH
Q psy9577 258 PRHMITFEYCMLHGINDTDIH 278 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed 278 (354)
+..+. .|+|++=+==|+.+
T Consensus 203 -g~~vk-tYlllKP~FlSE~e 221 (358)
T COG1244 203 -GAKVK-TYLLLKPPFLSEKE 221 (358)
T ss_pred -CCcee-EEEEecccccChHH
Confidence 34555 78888776666543
No 154
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=94.78 E-value=0.1 Score=52.65 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=107.0
Q ss_pred EeccccceEe----eeeecCCCCcccccchhhhhhhheehhhh----hhhhhcCcccCCcCceeEEeeeeecc---Cc-c
Q psy9577 103 ISTQVGCAIN----CIFCSTGRQGFVRNLTVGEIIGQLWVTEF----KLRREKNIKINSQGKRQITNIVMMGM---GE-P 170 (354)
Q Consensus 103 vSsq~GC~~~----C~fC~tg~~g~~r~lt~~EIv~qv~~~~~----~~~~~~~~~~~~~gg~~i~~Vvf~Gm---GE-P 170 (354)
+.++.||+.. |+||-....|...+-+++.++++|...-+ +++- |+.-+-..+||- || |
T Consensus 187 iETyRGC~r~~~ggCSFCtEp~~g~~~~R~~e~Vv~EVkaLY~~GvrhFRl----------GRQ~difsy~~~~~g~e~P 256 (560)
T COG1031 187 IETYRGCPRRVSGGCSFCTEPVRGRPEFRPPEDVVEEVKALYRAGVRHFRL----------GRQADIFSYGADDNGGEVP 256 (560)
T ss_pred EeeccCCcccccCCCccccCcCcCCcccCCHHHHHHHHHHHHHhccceeee----------ccccceeeecccccCCCCC
Confidence 6789999976 99998887666677789999998864311 1110 112233455543 42 3
Q ss_pred ccccccccceeeeeeccc-cccccceeEEeecc--cc-h--hc----h-HhhhhcC--cceeEEeeccCcccccccceeC
Q psy9577 171 LLNYKSTIGALKLILSDH-AYGLSRRHVILSTS--GI-I--PM----I-DKLAQEC--PVELAVSLHASNNNLRNKLVPI 237 (354)
Q Consensus 171 lln~~~v~~~l~~l~~~~-g~~~~~r~itvsT~--G~-~--p~----i-~~l~~~~--~~~LaiSL~a~~~e~r~~l~p~ 237 (354)
-=|++.+.++.+-+++.- ++ +.+-++.. +. + |. + +-+.++. ....++-+.++|+..-++=
T Consensus 257 ~PnPealekL~~Gir~~AP~l----~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~N--- 329 (560)
T COG1031 257 RPNPEALEKLFRGIRNVAPNL----KTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKN--- 329 (560)
T ss_pred CCCHHHHHHHHHHHHhhCCCC----eeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhc---
Confidence 346777777776666421 22 13344332 11 1 21 2 2233442 3347899999998765542
Q ss_pred CCcCchHHHHHHHhhhhccCCCceeeee-eeeccCCC-------CchHHHHHHHHHhhcC-c-cccceeeeeeeCCCCCC
Q psy9577 238 SKKYPLKELILACHRYITYSPRHMITFE-YCMLHGIN-------DTDIHAIELISLMRKN-K-ILTSCKINLIPFNCFPN 307 (354)
Q Consensus 238 ~~~~~l~~il~~l~~~~~~~~~~~v~ie-yvlI~GvN-------Ds~ed~~~La~ll~~~-~-~~~~~~vnLIp~n~~~~ 307 (354)
|-.-+-|+++++++-..+.. +.+-+-- --|+||+| .+.|..+.=-+||+++ + ..+.-.||+=...++++
T Consensus 330 nL~~spEEvl~AV~ivn~vG-~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpg 408 (560)
T COG1031 330 NLNASPEEVLEAVEIVNEVG-GGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPG 408 (560)
T ss_pred cccCCHHHHHHHHHHHHHhc-CccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCC
Confidence 22456799999998766544 3344322 23578888 3445555445566542 0 00124566666666665
Q ss_pred CC
Q psy9577 308 SN 309 (354)
Q Consensus 308 ~~ 309 (354)
.+
T Consensus 409 T~ 410 (560)
T COG1031 409 TP 410 (560)
T ss_pred Cc
Confidence 54
No 155
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=92.84 E-value=0.33 Score=46.06 Aligned_cols=187 Identities=14% Similarity=0.196 Sum_probs=98.7
Q ss_pred ccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-cc-----cccccccce
Q psy9577 107 VGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PL-----LNYKSTIGA 180 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Pl-----ln~~~v~~~ 180 (354)
.-|.-+|+||+-.. |....|.++|=-.-...+.. + .++.||+++.-- -| -+|-.++++
T Consensus 78 ~~CTR~C~FC~V~~-g~P~~lD~~EP~rvAeaV~~-m--------------gLkyVViTsVdRDDL~DGGA~hfa~~i~~ 141 (306)
T COG0320 78 DICTRRCRFCDVKT-GRPNPLDPDEPERVAEAVKD-M--------------GLKYVVITSVDRDDLPDGGAQHFAECIRA 141 (306)
T ss_pred chhccCCCccccCC-CCCCCCCCchHHHHHHHHHH-h--------------CCCeEEEEeeccccccccchHHHHHHHHH
Confidence 35888999999765 33455666654333322222 1 356777776311 01 012334444
Q ss_pred eeeeeccccccccceeEEeec-----ccchhchHhhhhcCcceeEEeeccCcccccccceeCCC-cCchHHHHHHHhhhh
Q psy9577 181 LKLILSDHAYGLSRRHVILST-----SGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK-KYPLKELILACHRYI 254 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT-----~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~-~~~l~~il~~l~~~~ 254 (354)
|+.+.. .++|+. .|....++.+++..++-++ -|=|+-.+|+|.-+ +...+.-++.|+++.
T Consensus 142 Ire~~P---------~t~iEvL~PDF~G~~~al~~v~~~~pdV~n-----HNvETVprL~~~VRp~A~Y~~SL~~L~~~k 207 (306)
T COG0320 142 IRELNP---------QTTIEVLTPDFRGNDDALEIVADAGPDVFN-----HNVETVPRLYPRVRPGATYERSLSLLERAK 207 (306)
T ss_pred HHhhCC---------CceEEEeCccccCCHHHHHHHHhcCcchhh-----cccccchhcccccCCCCcHHHHHHHHHHHH
Confidence 544432 355544 2322224444444332232 33345555554322 445677777777654
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcccccee-eeeeeCC-CCC----CCCcccccchhHHHHHHHHhhC
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCK-INLIPFN-CFP----NSNLICSKNSRIKIFAKILMNS 328 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~-vnLIp~n-~~~----~~~~~~p~~e~l~~f~~~l~~~ 328 (354)
+.. ..|.--.-|+=|.-.+.+++.+..+=|+..+ +. +.+=+|- |.. -..|- ++++.+.|.++..+.
T Consensus 208 ~~~--P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~g----vdilTiGQYlqPS~~HlpV~ryv--~PeeF~~~~~~a~~~ 279 (306)
T COG0320 208 ELG--PDIPTKSGLMVGLGETDEEVIEVMDDLRSAG----VDILTIGQYLQPSRKHLPVQRYV--TPEEFDELEEVAEEM 279 (306)
T ss_pred HhC--CCcccccceeeecCCcHHHHHHHHHHHHHcC----CCEEEeccccCCccccCCceecc--CHHHHHHHHHHHHHc
Confidence 432 3455566667788888888877766666522 22 2222332 211 12233 457788889998888
Q ss_pred cee
Q psy9577 329 GIF 331 (354)
Q Consensus 329 gi~ 331 (354)
|+.
T Consensus 280 GF~ 282 (306)
T COG0320 280 GFL 282 (306)
T ss_pred cch
Confidence 874
No 156
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=90.50 E-value=0.59 Score=45.00 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=96.0
Q ss_pred eeEEe-----ccccceEeeeeecCCCCc-cc-ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccC---c
Q psy9577 100 TLCIS-----TQVGCAINCIFCSTGRQG-FV-RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG---E 169 (354)
Q Consensus 100 tlcvS-----sq~GC~~~C~fC~tg~~g-~~-r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmG---E 169 (354)
..||| .+.-|-..|.||-+-... .. -.+|++||+.-.+. ||+.. -|.+.-++. | .
T Consensus 50 GrCIsLlKiLlTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltln---fYrRn-----------YIeGLFLSS-Gvi~~ 114 (404)
T COG4277 50 GRCISLLKILLTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLN---FYRRN-----------YIEGLFLSS-GVIKN 114 (404)
T ss_pred CccHHHHHHHHhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHH---HHHHh-----------hhhhheecc-ccccC
Confidence 34677 347899999999884322 12 35899999987653 44321 233333333 2 1
Q ss_pred cccccccccceeeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHH
Q psy9577 170 PLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248 (354)
Q Consensus 170 Plln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~ 248 (354)
|=.-.+.+++.+++|+=.++|+ +.-|..+-. |-.|. |++.... .+.+.|.+..+.++--+.+-|-....++..-+.
T Consensus 115 ~DyTmE~mi~var~LRle~~f~-GYIHlK~IP-gas~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg 191 (404)
T COG4277 115 PDYTMEEMIEVARILRLEHKFR-GYIHLKIIP-GASPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMG 191 (404)
T ss_pred cchHHHHHHHHHHHHhhccccC-cEEEEEecC-CCCHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHH
Confidence 2222355666777776433331 112444322 22222 3333322 335777777788777777766322222222222
Q ss_pred HHhh----hhccCC--Cc--ee----eeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 249 ACHR----YITYSP--RH--MI----TFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 249 ~l~~----~~~~~~--~~--~v----~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
-++. ..+... +. .. .=.-++|.-.-++++++-...+.+-+.- ....|..-.|.|++.++
T Consensus 192 ~ir~~i~e~~e~~~r~r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y--~lkRVyySaf~Pv~~s~ 262 (404)
T COG4277 192 WIRLKILENAEDKRRKRHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRY--SLKRVYYSAFSPVPSSP 262 (404)
T ss_pred HHHHHHhhcccchhhhccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhcc--ceeEEEeecccccCCCC
Confidence 2221 110000 00 00 0012345555666778877777765411 12567778888887654
No 157
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.27 E-value=1.4 Score=41.06 Aligned_cols=165 Identities=10% Similarity=0.003 Sum_probs=89.9
Q ss_pred cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc----cccccccceeeeeeccc-cccccceeE-
Q psy9577 124 VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL----LNYKSTIGALKLILSDH-AYGLSRRHV- 197 (354)
Q Consensus 124 ~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl----ln~~~v~~~l~~l~~~~-g~~~~~r~i- 197 (354)
...++.++.++-+....+ ..++.|-+.+ |+|. .. +...+.++.+++.. +. ++
T Consensus 13 ~~~~s~e~~~~i~~~L~~---------------~GV~~IEvg~-~~~~~~~p~~-~~~~~~i~~l~~~~~~~-----~~~ 70 (265)
T cd03174 13 GATFSTEDKLEIAEALDE---------------AGVDSIEVGS-GASPKAVPQM-EDDWEVLRAIRKLVPNV-----KLQ 70 (265)
T ss_pred CCCCCHHHHHHHHHHHHH---------------cCCCEEEecc-CcCccccccC-CCHHHHHHHHHhccCCc-----EEE
Confidence 456788887766553222 1356677745 8876 21 34455566666522 22 44
Q ss_pred EeecccchhchHhhhhcCcceeEEeeccCcccccccce-eCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCC--C
Q psy9577 198 ILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLV-PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGIN--D 274 (354)
Q Consensus 198 tvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~-p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvN--D 274 (354)
.+.++| ...++++.+.....+.+++.+.+ .|.+.. .......++.+++.++...+ . +..+.+.. ..-.. .
T Consensus 71 ~l~~~~-~~~i~~a~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~-~-G~~v~~~~--~~~~~~~~ 143 (265)
T cd03174 71 ALVRNR-EKGIERALEAGVDEVRIFDSASE--THSRKNLNKSREEDLENAEEAIEAAKE-A-GLEVEGSL--EDAFGCKT 143 (265)
T ss_pred EEccCc-hhhHHHHHhCCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHH-C-CCeEEEEE--EeecCCCC
Confidence 667777 33455555554445777776664 444431 11223357778888876543 3 33454444 33334 5
Q ss_pred chHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhh
Q psy9577 275 TDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 327 (354)
Q Consensus 275 s~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~ 327 (354)
+++++.++++.+..++ ...|. +-+..+ ..+++++.++.+.+++
T Consensus 144 ~~~~l~~~~~~~~~~g---~~~i~---l~Dt~G----~~~P~~v~~li~~l~~ 186 (265)
T cd03174 144 DPEYVLEVAKALEEAG---ADEIS---LKDTVG----LATPEEVAELVKALRE 186 (265)
T ss_pred CHHHHHHHHHHHHHcC---CCEEE---echhcC----CcCHHHHHHHHHHHHH
Confidence 6678888888888743 12233 333222 2344566666666654
No 158
>KOG2672|consensus
Probab=89.76 E-value=0.56 Score=44.63 Aligned_cols=191 Identities=12% Similarity=0.167 Sum_probs=101.8
Q ss_pred ccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc---cccccccccceeee
Q psy9577 107 VGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE---PLLNYKSTIGALKL 183 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE---Plln~~~v~~~l~~ 183 (354)
.-|.-+|+||......-...+.+.|=..-......+ .++.||+...-- |=.-.+.+.+.++.
T Consensus 119 DTCTRGCRFCsVKTsR~PpPlDp~EPeNTAeAIasW---------------gl~YiVlTSVDRDDlpDgGa~HiAkTVq~ 183 (360)
T KOG2672|consen 119 DTCTRGCRFCSVKTSRNPPPLDPNEPENTAEAIASW---------------GLDYIVLTSVDRDDLPDGGANHIAKTVQK 183 (360)
T ss_pred CccccCcceeeeecCCCCcCCCCCCcccHHHHHHHc---------------CCCeEEEEecccccCcCcchHHHHHHHHH
Confidence 468889999987543222233333322211111111 255677765311 11113567777887
Q ss_pred eeccccccccceeEEeecccchhc-------hHhhhhcCcceeEEeeccCcccccccceeC--CCcCchHHHHHHHhhhh
Q psy9577 184 ILSDHAYGLSRRHVILSTSGIIPM-------IDKLAQECPVELAVSLHASNNNLRNKLVPI--SKKYPLKELILACHRYI 254 (354)
Q Consensus 184 l~~~~g~~~~~r~itvsT~G~~p~-------i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~--~~~~~l~~il~~l~~~~ 254 (354)
++.... +|-|++ +.|. ++.++..+ +|+-|-|-|+-.+|+|. +++-...+-++.++..-
T Consensus 184 iK~k~p------~ilvE~--L~pDF~Gd~~~Ve~va~SG-----LDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK 250 (360)
T KOG2672|consen 184 IKEKAP------EILVEC--LTPDFRGDLKAVEKVAKSG-----LDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAK 250 (360)
T ss_pred HHhhCc------ccchhh--cCccccCchHHHHHHHhcC-----ccceecchhhHHhcchhhcCcccchHHhHHHHHHHH
Confidence 776332 666665 3342 33333321 34455667777888875 34567888888888654
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCC-----CCcccccchhHHHHHHHHhhCc
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPN-----SNLICSKNSRIKIFAKILMNSG 329 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~-----~~~~~p~~e~l~~f~~~l~~~g 329 (354)
+.. ..+.--..++-|.-.++|++....+.++..+ ...+.+=.|.+.-. ..|..| +..+...++-.+.|
T Consensus 251 ~~~--P~litktsiMlglgetdeei~~tl~dLr~~~---vdv~t~gqym~ptkrhl~v~eyvtp--ekf~~w~~~~~~lg 323 (360)
T KOG2672|consen 251 EVK--PGLITKTSIMLGLGETDEEIKQTLKDLRAAD---VDVVTFGQYMQPTKRHLKVKEYVTP--EKFDYWKEYGEELG 323 (360)
T ss_pred hhC--CCceehhhhhhccCCCHHHHHHHHHHHHHcC---CcEEecccccCCccccceeEEeeCH--HHHHHHHHHhhhcc
Confidence 332 3444456666688888888888777777622 12233334443221 124444 34445555555666
Q ss_pred eeE
Q psy9577 330 IFV 332 (354)
Q Consensus 330 i~v 332 (354)
+-.
T Consensus 324 f~y 326 (360)
T KOG2672|consen 324 FLY 326 (360)
T ss_pred eEE
Confidence 544
No 159
>KOG2900|consensus
Probab=87.92 E-value=0.24 Score=46.46 Aligned_cols=169 Identities=17% Similarity=0.282 Sum_probs=90.4
Q ss_pred eeEEeccccceEeeeeecCCC---Ccc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc--
Q psy9577 100 TLCISTQVGCAINCIFCSTGR---QGF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL-- 172 (354)
Q Consensus 100 tlcvSsq~GC~~~C~fC~tg~---~g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll-- 172 (354)
|+----..||.-.|.||+-.. .|. .+-+..+|++++...+.+. |. -.| -||-..-
T Consensus 85 TLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~------------GS-----TRF-CmGaAWRD~ 146 (380)
T KOG2900|consen 85 TLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN------------GS-----TRF-CMGAAWRDM 146 (380)
T ss_pred EEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhc------------CC-----cee-ecchhhhhh
Confidence 333334589999999998542 233 4567888888887765441 21 122 2344432
Q ss_pred -----ccccccceeeeeeccccccccceeEEeecccchhc--hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHH
Q psy9577 173 -----NYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKE 245 (354)
Q Consensus 173 -----n~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~--i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 245 (354)
++..+.+.++.+++ .|+ .+++ |-|.+.. .++|-+.+-....-.|+.. .|-|.+++- .+ ..++
T Consensus 147 ~GRk~~fk~IlE~ikevr~-Mgm-----EvCv-TLGMv~~qQAkeLKdAGLTAYNHNlDTS-REyYskvIt-TR--tYDd 215 (380)
T KOG2900|consen 147 KGRKSAFKRILEMIKEVRD-MGM-----EVCV-TLGMVDQQQAKELKDAGLTAYNHNLDTS-REYYSKVIT-TR--TYDD 215 (380)
T ss_pred ccchhHHHHHHHHHHHHHc-CCc-----eeee-eeccccHHHHHHHHhccceecccCccch-hhhhcccce-ec--chHH
Confidence 34566777776665 565 7877 7788753 2333332211111223333 345666543 23 3455
Q ss_pred HHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCC
Q psy9577 246 LILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF 305 (354)
Q Consensus 246 il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~ 305 (354)
=++.++...+. | |.+-.==|=|.-++++|--.|.--+.. .+.|.+-+|+|..
T Consensus 216 RL~Ti~nvr~a--G--ikvCsGGIlGLGE~e~DriGlihtLat----mp~HPESvPiN~L 267 (380)
T KOG2900|consen 216 RLQTIKNVREA--G--IKVCSGGILGLGESEDDRIGLIHTLAT----MPPHPESVPINRL 267 (380)
T ss_pred HHHHHHHHHHh--c--ceecccccccccccccceeeeeeeecc----CCCCCcccccceE
Confidence 55555544332 2 222222355777777765444444444 5566666777754
No 160
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=86.60 E-value=4.3 Score=38.86 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=67.3
Q ss_pred CcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccC-CCCchHHHHHHHHHhhcCcccc
Q psy9577 215 CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHG-INDTDIHAIELISLMRKNKILT 293 (354)
Q Consensus 215 ~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G-vNDs~ed~~~La~ll~~~~~~~ 293 (354)
..++|-+-|-++++++-+.| |+.++++...+++++..+. +.+|. .-+|-| .-++.++.-+-++.+..++.
T Consensus 142 ~~vWvELGLQT~h~~Tlk~i---NRgHd~~~y~dav~r~rkr--gIkvc--~HiI~GLPgE~~~~mleTak~v~~~~v-- 212 (312)
T COG1242 142 YEVWVELGLQTAHDKTLKRI---NRGHDFACYVDAVKRLRKR--GIKVC--THLINGLPGETRDEMLETAKIVAELGV-- 212 (312)
T ss_pred eEEEEEeccchhhHHHHHHH---hcccchHHHHHHHHHHHHc--CCeEE--EEEeeCCCCCCHHHHHHHHHHHHhcCC--
Confidence 35566677889998887775 7899999999999987643 34444 333333 23567788888888887542
Q ss_pred ceeeeeeeCCCCCCC---------Ccccccchh-HHHHHHHHhhCceeEEE
Q psy9577 294 SCKINLIPFNCFPNS---------NLICSKNSR-IKIFAKILMNSGIFVTI 334 (354)
Q Consensus 294 ~~~vnLIp~n~~~~~---------~~~~p~~e~-l~~f~~~l~~~gi~v~i 334 (354)
.-|.|-|.|-+.+. .++.-+.++ ++-..+.|+-.--.+.|
T Consensus 213 -~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vvi 262 (312)
T COG1242 213 -DGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVI 262 (312)
T ss_pred -ceEEEEEEEEecCChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEE
Confidence 23444555544443 244444433 44555556544444444
No 161
>KOG2492|consensus
Probab=73.22 E-value=1.2 Score=44.60 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=42.7
Q ss_pred CCceeEEeccccceEeeeeecCCC-CcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc
Q psy9577 97 NRNTLCISTQVGCAINCIFCSTGR-QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM 167 (354)
Q Consensus 97 ~r~tlcvSsq~GC~~~C~fC~tg~-~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm 167 (354)
...|.-||...||.--|.||-.+. .|..|.-..+-|++++.... +. .+..|++.|.
T Consensus 218 ~s~tAFvSiMRGCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~----~q-----------G~KeVTLLGQ 274 (552)
T KOG2492|consen 218 SSTTAFVSIMRGCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLA----EQ-----------GVKEVTLLGQ 274 (552)
T ss_pred ccchhHHHHHhccccccceEEEeccCCcccCCchHHHHHHHHHHh----hc-----------Cceeeeeecc
Confidence 467888999999999999998863 35567777888998887532 21 3677888885
No 162
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=73.17 E-value=2.9 Score=26.25 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=12.9
Q ss_pred eEEeecccchhchHhhh
Q psy9577 196 HVILSTSGIIPMIDKLA 212 (354)
Q Consensus 196 ~itvsT~G~~p~i~~l~ 212 (354)
.|.|||||-.|.+-+++
T Consensus 6 qI~ISTnG~sP~la~~i 22 (30)
T PF14824_consen 6 QIAISTNGKSPRLARLI 22 (30)
T ss_dssp EEEEEESSS-HHHHHHH
T ss_pred EEEEECCCCChHHHHHH
Confidence 79999999999765544
No 163
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=65.59 E-value=66 Score=30.57 Aligned_cols=169 Identities=16% Similarity=0.054 Sum_probs=90.8
Q ss_pred chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeee--ccCccccccccccceeeeeecc-ccccccceeEEeeccc
Q psy9577 127 LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMM--GMGEPLLNYKSTIGALKLILSD-HAYGLSRRHVILSTSG 203 (354)
Q Consensus 127 lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~--GmGEPlln~~~v~~~l~~l~~~-~g~~~~~r~itvsT~G 203 (354)
+|++||+++.....+- |..+-++..= =-|.|.+.++...+++..+++. -++ -+.+||.|
T Consensus 23 ~tpeEia~~A~~c~~A-------------GAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~-----iv~~Ttg~ 84 (272)
T PF05853_consen 23 ITPEEIAADAVACYEA-------------GAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDL-----IVQPTTGG 84 (272)
T ss_dssp -SHHHHHHHHHHHHHH-------------TESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTS-----EEEEESST
T ss_pred CCHHHHHHHHHHHHHc-------------CCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCe-----EEEeCCCC
Confidence 6899999998765431 2344455543 2388999999999999999875 355 68888876
Q ss_pred c-hhc-hHhhh--hc-CcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHH
Q psy9577 204 I-IPM-IDKLA--QE-CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIH 278 (354)
Q Consensus 204 ~-~p~-i~~l~--~~-~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed 278 (354)
. ... -+++. .. .+....+++.+++-..+...+. .+.+.+.+.++.+.+. .|..|+-+. +..+
T Consensus 85 ~~~~~~~~R~~~v~~~~pd~asl~~gs~n~~~~~~~~~----n~~~~~~~~~~~~~e~----Gi~pe~ev~-----d~~~ 151 (272)
T PF05853_consen 85 GGGPDPEERLAHVEAWKPDMASLNPGSMNFGTRDRVYI----NTPADARELARRMRER----GIKPEIEVF-----DPGH 151 (272)
T ss_dssp TTTSGHHHHCTHHHHH--SEEEEE-S-EEESGGCSEE-------HHHHHHHHHHHHHT----T-EEEEEES-----SHHH
T ss_pred CCCCCHHHHHHHHHhcCCCeEEecccccccccCCceec----CCHHHHHHHHHHHHHc----CCeEEEEEE-----cHHH
Confidence 3 222 22221 22 3444566777666443333332 2445555656554432 366666666 5667
Q ss_pred HHHHHHHhhcCcc-ccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhhCceeE
Q psy9577 279 AIELISLMRKNKI-LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 279 ~~~La~ll~~~~~-~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v 332 (354)
+..+..|++. +. .-+..++++-=.+ .-.+++.+.+..+.+.+.. +...
T Consensus 152 l~~~~~l~~~-G~l~~p~~~~~vlG~~----~g~~~~~~~l~~~l~~l~~-~~~w 200 (272)
T PF05853_consen 152 LRNARRLIEK-GLLPGPLLVNFVLGVP----GGMPATPENLLAMLDMLPE-GAPW 200 (272)
T ss_dssp HHHHHHHHHT-TSS-SSEEEEEEES-T----TS--S-HHHHHHHHHHHHH-TEEE
T ss_pred HHHHHHHHHC-CCCCCCeEEEEcccCC----CCCCCCHHHHHHHHHhcCC-CCcE
Confidence 8877777764 21 0245666654222 1236778888888888876 4433
No 164
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.95 E-value=4.3 Score=45.68 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=20.2
Q ss_pred hhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc
Q psy9577 133 IGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL 171 (354)
Q Consensus 133 v~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl 171 (354)
+..++++..||..+ +| +|+|+| |||-
T Consensus 944 ~~~~~kd~~fy~~s-------gg-----GvTlsG-GE~~ 969 (1012)
T TIGR03315 944 LTLFWLEEDFYNST-------NS-----GFLVED-PVVK 969 (1012)
T ss_pred eeeecchHHHHhcc-------CC-----cEEEEC-CCcc
Confidence 67778888888765 34 489999 9994
No 165
>PRK15063 isocitrate lyase; Provisional
Probab=57.48 E-value=55 Score=33.32 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=55.5
Q ss_pred chHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc-ccccchhHHH
Q psy9577 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL-ICSKNSRIKI 320 (354)
Q Consensus 242 ~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~-~~p~~e~l~~ 320 (354)
.+++.++-.+.|.. . ---|++|.- . -+.++++++++-++. ..-.|++-||-.+.-.| ...+++++..
T Consensus 263 Gld~AI~Ra~AYa~-G-AD~iw~Et~----~-~d~ee~~~fa~~v~~-----~~P~~~layn~sPsfnW~~~~~~~~~~~ 330 (428)
T PRK15063 263 GIEQAIARGLAYAP-Y-ADLIWCETS----T-PDLEEARRFAEAIHA-----KFPGKLLAYNCSPSFNWKKNLDDATIAK 330 (428)
T ss_pred CHHHHHHHHHHHhc-C-CCEEEeCCC----C-CCHHHHHHHHHhhcc-----cCccceeecCCCCCcccccccCHHHHHH
Confidence 57777777777765 3 335665532 2 246777777776543 22356777876655444 3478899999
Q ss_pred HHHHHhhCceeEEEec
Q psy9577 321 FAKILMNSGIFVTIRK 336 (354)
Q Consensus 321 f~~~l~~~gi~v~ir~ 336 (354)
|.+.|.+.|+...+-.
T Consensus 331 f~~eL~~~Gy~~~~~~ 346 (428)
T PRK15063 331 FQRELGAMGYKFQFIT 346 (428)
T ss_pred HHHHHHHcCceEEEec
Confidence 9999999998776543
No 166
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=52.12 E-value=1.2 Score=44.29 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=45.7
Q ss_pred eeecCCCCcccccchhhhhhhheehhhhh-hhhhcCcccCCcCceeEEeeeeeccCcccccc---ccccceeeeeecccc
Q psy9577 114 IFCSTGRQGFVRNLTVGEIIGQLWVTEFK-LRREKNIKINSQGKRQITNIVMMGMGEPLLNY---KSTIGALKLILSDHA 189 (354)
Q Consensus 114 ~fC~tg~~g~~r~lt~~EIv~qv~~~~~~-~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~---~~v~~~l~~l~~~~g 189 (354)
..|.++.... ..+.+++++.+.....+ +..+ ++ .+++++ |||+.+. ++..+++..|++ .|
T Consensus 60 ~~CP~~Ai~~--~~~~~~v~~~l~~~~~~~v~~~-------ap-----~~~~s~-ge~~~~~~~~~~~~~l~~~lk~-lG 123 (374)
T TIGR02512 60 LVCPVGAITE--KDHVDRVLKALADPKKVVVVQI-------AP-----AVRVAL-GEEFGMPIGTDVTGKMVAALRK-LG 123 (374)
T ss_pred HhCCCChhhh--hccHHHHHHHhccccceEEEEe-------Ch-----HHHHHH-HHHhCCCccchHHHHHHHHHHH-cC
Confidence 5555554432 24567777776654333 2221 11 245555 9999875 456788888886 78
Q ss_pred ccccceeEEeecccchh
Q psy9577 190 YGLSRRHVILSTSGIIP 206 (354)
Q Consensus 190 ~~~~~r~itvsT~G~~p 206 (354)
+ +..++|++..+
T Consensus 124 f-----~~v~et~~~ad 135 (374)
T TIGR02512 124 F-----DYVFDTNFAAD 135 (374)
T ss_pred C-----CEEEECcHHHH
Confidence 8 89999997665
No 167
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=48.04 E-value=6.6 Score=39.68 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=13.4
Q ss_pred ccceEeeeeecCCCC
Q psy9577 107 VGCAINCIFCSTGRQ 121 (354)
Q Consensus 107 ~GC~~~C~fC~tg~~ 121 (354)
.||++.|.||+++..
T Consensus 7 ~gC~~~C~wC~~p~~ 21 (404)
T TIGR03278 7 IDCRGFCRYCYFKKV 21 (404)
T ss_pred CCCCCcCCCCCCCCC
Confidence 699999999999854
No 168
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=46.56 E-value=19 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=35.8
Q ss_pred cccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhC-cCcchhhhh---hHHHHHHhhhc
Q psy9577 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFG-VSDFNKMTD---LSMSLRKKLKN 57 (354)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~-~~~~~~~~~---l~~~~r~~l~~ 57 (354)
.|+...+.++|...+..+| .-+|++|.+|--.++ ..+++++.. ++++..+++..
T Consensus 8 invNta~~~~L~~~ipgig--~~~a~~Il~~R~~~g~~~s~~dL~~v~gi~~~~~~~i~~ 65 (69)
T TIGR00426 8 VNINTATAEELQRAMNGVG--LKKAEAIVSYREEYGPFKTVEDLKQVPGIGNSLVEKNLA 65 (69)
T ss_pred eECcCCCHHHHHhHCCCCC--HHHHHHHHHHHHHcCCcCCHHHHHcCCCCCHHHHHHHHh
Confidence 4566667777776544444 458999999986664 567777665 45666666554
No 169
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=43.52 E-value=43 Score=35.80 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=44.8
Q ss_pred chHHHHHHHHHhhcCccccceeeeeeeCCCCCCC---Cc------cc----ccchhHHHHHHHHhhCceeEEEe
Q psy9577 275 TDIHAIELISLMRKNKILTSCKINLIPFNCFPNS---NL------IC----SKNSRIKIFAKILMNSGIFVTIR 335 (354)
Q Consensus 275 s~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~---~~------~~----p~~e~l~~f~~~l~~~gi~v~ir 335 (354)
..|-+.++..+++++| ..+|+|+|..++++. .| .+ -+++++.+|.+..-++||.|.+-
T Consensus 163 ~~e~a~~llpYl~elG---~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELG---ITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhC---CCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4677888999999965 378999999877643 12 22 23689999999999999999874
No 170
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=42.71 E-value=1.8e+02 Score=27.75 Aligned_cols=110 Identities=16% Similarity=0.247 Sum_probs=60.9
Q ss_pred cceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeee--eeccCCCCchHHHHH---HHHHhhcCc
Q psy9577 216 PVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEY--CMLHGINDTDIHAIE---LISLMRKNK 290 (354)
Q Consensus 216 ~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~iey--vlI~GvNDs~ed~~~---La~ll~~~~ 290 (354)
...+.+.|..-..+.=-. +| +.++++++++++.+.-|..+|..|| +++-+--+-+.|++. |++.|++.=
T Consensus 74 ~~yfq~Tit~Y~~~lEp~-vP-----~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t 147 (266)
T PF08902_consen 74 PYYFQFTITGYGKDLEPN-VP-----PKDERIETFRELSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYT 147 (266)
T ss_pred ceEEEEEeCCCCccccCC-CC-----CHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccC
Confidence 444667777665542222 22 5678888888887666556888886 444443333445554 444444421
Q ss_pred cccceeeeeee-CCCCC----CC--CcccccchhHHHHHHHH----hhCceeEE
Q psy9577 291 ILTSCKINLIP-FNCFP----NS--NLICSKNSRIKIFAKIL----MNSGIFVT 333 (354)
Q Consensus 291 ~~~~~~vnLIp-~n~~~----~~--~~~~p~~e~l~~f~~~l----~~~gi~v~ 333 (354)
..+.+-++- |-.+. .. .+..|+.+++.++.+.| +++|+.+.
T Consensus 148 --~~~viSF~D~Y~k~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l~ 199 (266)
T PF08902_consen 148 --DRCVISFLDLYRKVRRNLARLGFRIREPSEEEKRELAKRLAEIAKKYGMTLY 199 (266)
T ss_pred --CEEEEEeeeccHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 124455553 32221 11 25678888877666555 66776543
No 171
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.95 E-value=24 Score=26.32 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhh
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACG 347 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCG 347 (354)
.-++.+.|+++|+.+.+- +-=++|.++||
T Consensus 14 a~~~ek~lk~~gi~~~li-P~P~~i~~~CG 42 (73)
T PF11823_consen 14 AMKAEKLLKKNGIPVRLI-PTPREISAGCG 42 (73)
T ss_pred HHHHHHHHHHCCCcEEEe-CCChhccCCCC
Confidence 344555555555554442 22224455555
No 172
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=39.74 E-value=1.1e+02 Score=29.16 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=8.4
Q ss_pred cCCCCchHHHHHHHHHhhc
Q psy9577 270 HGINDTDIHAIELISLMRK 288 (354)
Q Consensus 270 ~GvNDs~ed~~~La~ll~~ 288 (354)
.|+..+.+++.++++.+++
T Consensus 74 ~gv~~~t~~~i~~a~~a~~ 92 (289)
T cd00951 74 AGAGYGTATAIAYAQAAEK 92 (289)
T ss_pred EecCCCHHHHHHHHHHHHH
Confidence 3343344444444444444
No 173
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=38.09 E-value=1.2e+02 Score=29.15 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=10.8
Q ss_pred eccCCCCchHHHHHHHHHhhc
Q psy9577 268 MLHGINDTDIHAIELISLMRK 288 (354)
Q Consensus 268 lI~GvNDs~ed~~~La~ll~~ 288 (354)
+|.|+..+.+++.++++.+++
T Consensus 79 vi~gv~~~t~~~i~~~~~a~~ 99 (303)
T PRK03620 79 VIAGAGGGTAQAIEYAQAAER 99 (303)
T ss_pred EEEecCCCHHHHHHHHHHHHH
Confidence 344444445555555555555
No 174
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=36.43 E-value=28 Score=33.25 Aligned_cols=100 Identities=16% Similarity=0.254 Sum_probs=61.2
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc-cccccccceeeeeeccccccccceeEEe-eccc
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL-LNYKSTIGALKLILSDHAYGLSRRHVIL-STSG 203 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl-ln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G 203 (354)
+.|.+|.++++.....+..+. | ..+ .+.++-.|.|+ ..++++.+.++.+.+ .|. ..|++ +|.|
T Consensus 107 ~~t~~e~l~~~~~~i~~a~~~--------G-~~v-~~~~~d~~~~~r~~~~~~~~~~~~~~~-~G~----~~i~l~DT~G 171 (280)
T cd07945 107 RKTPEEHFADIREVIEYAIKN--------G-IEV-NIYLEDWSNGMRDSPDYVFQLVDFLSD-LPI----KRIMLPDTLG 171 (280)
T ss_pred CcCHHHHHHHHHHHHHHHHhC--------C-CEE-EEEEEeCCCCCcCCHHHHHHHHHHHHH-cCC----CEEEecCCCC
Confidence 468899999888777766542 2 222 23444346663 457889999988876 564 25555 8999
Q ss_pred ch-hc-hHhhhhc----CcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 204 II-PM-IDKLAQE----CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 204 ~~-p~-i~~l~~~----~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+. |. +.++.+. .+ .+.+++|.-|+ ....+.+.+.+++
T Consensus 172 ~~~P~~v~~l~~~l~~~~~-~~~i~~H~Hnd----------~Gla~AN~laA~~ 214 (280)
T cd07945 172 ILSPFETYTYISDMVKRYP-NLHFDFHAHND----------YDLAVANVLAAVK 214 (280)
T ss_pred CCCHHHHHHHHHHHHhhCC-CCeEEEEeCCC----------CCHHHHHHHHHHH
Confidence 76 53 4444433 22 35678887774 1234556666655
No 175
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=35.64 E-value=1.3e+02 Score=28.61 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=12.3
Q ss_pred eeccCCCCchHHHHHHHHHhhcC
Q psy9577 267 CMLHGINDTDIHAIELISLMRKN 289 (354)
Q Consensus 267 vlI~GvNDs~ed~~~La~ll~~~ 289 (354)
+++-|+..+.+++.++++...+.
T Consensus 76 pvi~gv~~~t~~ai~~a~~a~~~ 98 (296)
T TIGR03249 76 PVYTGVGGNTSDAIEIARLAEKA 98 (296)
T ss_pred cEEEecCccHHHHHHHHHHHHHh
Confidence 33444444455666666666553
No 176
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=35.47 E-value=1.4e+02 Score=27.82 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred eccCCCC--chHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc--ccccchhHHHHHHHHhhCceeEEE
Q psy9577 268 MLHGIND--TDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL--ICSKNSRIKIFAKILMNSGIFVTI 334 (354)
Q Consensus 268 lI~GvND--s~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~--~~p~~e~l~~f~~~l~~~gi~v~i 334 (354)
.|.+|+- +.+.+++|++++.+.+ ++..|-+||.+..+.... .-+...+.-+..+.++.+|-.+.+
T Consensus 5 rleDVsP~~~~~~l~~i~d~l~~~~--ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~l 73 (243)
T PF10096_consen 5 RLEDVSPFSDLEKLKEIADYLYKYG--IPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVL 73 (243)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEE
Confidence 3555554 5788899999998876 678888999765433322 222223333333444456655544
No 177
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=35.21 E-value=39 Score=26.70 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=21.9
Q ss_pred cCCCChhHHHHHHHH---hCCCccchHHHHHH
Q psy9577 4 LLDLSPLKFVNYCKE---LGEMPFRAKQLQKW 32 (354)
Q Consensus 4 ~~~~~~~~l~~~~~~---~g~~~~r~~qi~~~ 32 (354)
-++|+.+|+.+|..+ .|++.-|+.+|.+|
T Consensus 58 rY~Ls~eEf~~W~~av~rhge~aLraT~~q~y 89 (90)
T PF06627_consen 58 RYGLSEEEFESWQRAVDRHGENALRATRLQKY 89 (90)
T ss_dssp CTTSSHHHHHHHHHHCCT--TTSS-TCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 578999999999874 68899999888764
No 178
>PLN02417 dihydrodipicolinate synthase
Probab=34.56 E-value=1.2e+02 Score=28.66 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=9.8
Q ss_pred eccCCCC-chHHHHHHHHHhhc
Q psy9577 268 MLHGIND-TDIHAIELISLMRK 288 (354)
Q Consensus 268 lI~GvND-s~ed~~~La~ll~~ 288 (354)
+|.|+.. +.+++.++++..+.
T Consensus 73 vi~gv~~~~t~~~i~~a~~a~~ 94 (280)
T PLN02417 73 VIGNTGSNSTREAIHATEQGFA 94 (280)
T ss_pred EEEECCCccHHHHHHHHHHHHH
Confidence 3444443 34445555555544
No 179
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=33.04 E-value=40 Score=33.40 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=61.5
Q ss_pred ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc---ccccccceeeeeeccccccccceeEEe-e
Q psy9577 125 RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL---NYKSTIGALKLILSDHAYGLSRRHVIL-S 200 (354)
Q Consensus 125 r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll---n~~~v~~~l~~l~~~~g~~~~~r~itv-s 200 (354)
-+.|.+|+++++.....+.++. |..+....-+..|-|.. .++++.+.++.+.+ .|. ..|++ +
T Consensus 153 ~~~t~~e~l~~~~~~v~~Ak~~---------Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~-~Ga----d~I~l~D 218 (347)
T PLN02746 153 INCSIEESLVRYREVALAAKKH---------SIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYD-MGC----YEISLGD 218 (347)
T ss_pred hCCCHHHHHHHHHHHHHHHHHc---------CCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHH-cCC----CEEEecC
Confidence 3478999999887777766542 23443223223354543 56889999888876 564 25666 8
Q ss_pred cccch-hc-hHhhhhc----CcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 201 TSGII-PM-IDKLAQE----CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 201 T~G~~-p~-i~~l~~~----~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
|.|+. |. +.++.+. .+. ..|.+|.-|+ ....+.+.+.++..
T Consensus 219 T~G~a~P~~v~~lv~~l~~~~~~-~~i~~H~Hnd----------~GlA~AN~lAA~~a 265 (347)
T PLN02746 219 TIGVGTPGTVVPMLEAVMAVVPV-DKLAVHFHDT----------YGQALANILVSLQM 265 (347)
T ss_pred CcCCcCHHHHHHHHHHHHHhCCC-CeEEEEECCC----------CChHHHHHHHHHHh
Confidence 99976 43 4444433 231 3467777663 23445667776653
No 180
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=31.85 E-value=34 Score=21.89 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=16.0
Q ss_pred cCCCChhHHHHHHHHhCCCc
Q psy9577 4 LLDLSPLKFVNYCKELGEMP 23 (354)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~ 23 (354)
+..|+..||++++.++|.+.
T Consensus 1 l~~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLST 20 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-S
T ss_pred CCcCcHHHHHHHHHHCCCCC
Confidence 35688899999999999874
No 181
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=29.95 E-value=1.9e+02 Score=27.47 Aligned_cols=13 Identities=15% Similarity=-0.013 Sum_probs=5.8
Q ss_pred hHHHHHHHHHhhc
Q psy9577 276 DIHAIELISLMRK 288 (354)
Q Consensus 276 ~ed~~~La~ll~~ 288 (354)
.+++.++++.+++
T Consensus 82 ~~~ai~~a~~a~~ 94 (288)
T cd00954 82 LKESQELAKHAEE 94 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 182
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=28.77 E-value=1.3e+02 Score=29.40 Aligned_cols=69 Identities=19% Similarity=0.171 Sum_probs=45.3
Q ss_pred ccCCCCchHHHHHHHHHhhcCccccceeeee-eeCCCCCCCCcccccchhHHHHHHHHhhCceeEEEec-ccccchhhhh
Q psy9577 269 LHGINDTDIHAIELISLMRKNKILTSCKINL-IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRK-IRGNDINAAC 346 (354)
Q Consensus 269 I~GvNDs~ed~~~La~ll~~~~~~~~~~vnL-Ip~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~-~~G~di~aaC 346 (354)
+-|+||.. ++.+-.++++.+ .+.--++ +.|||-.. -+...+++|++.+++.|+.|.--. +...|+..+=
T Consensus 136 vTGvsD~~-~v~q~i~lik~~---~Pnak~Igv~Y~p~E~-----ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~ 206 (322)
T COG2984 136 VTGVSDLL-PVAQQIELIKAL---LPNAKSIGVLYNPGEA-----NSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAV 206 (322)
T ss_pred eeecCCcc-hHHHHHHHHHHh---CCCCeeEEEEeCCCCc-----ccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHH
Confidence 55889975 566666777762 2211122 67887432 245668899999999999876544 5788887654
No 183
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.50 E-value=1.9e+02 Score=27.17 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=10.4
Q ss_pred eccCCCC-chHHHHHHHHHhhc
Q psy9577 268 MLHGIND-TDIHAIELISLMRK 288 (354)
Q Consensus 268 lI~GvND-s~ed~~~La~ll~~ 288 (354)
++-|+.. +.+++.++++.+++
T Consensus 72 vi~gv~~~~~~~~~~~a~~a~~ 93 (284)
T cd00950 72 VIAGTGSNNTAEAIELTKRAEK 93 (284)
T ss_pred EEeccCCccHHHHHHHHHHHHH
Confidence 4445543 34455555555554
No 184
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=28.31 E-value=28 Score=32.96 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=36.1
Q ss_pred hhHHHHHHHHhCCCcc---chHHHHHHHHHhCc-Ccchhh---hhhH--HHHHHhhhcee
Q psy9577 9 PLKFVNYCKELGEMPF---RAKQLQKWIHKFGV-SDFNKM---TDLS--MSLRKKLKNSV 59 (354)
Q Consensus 9 ~~~l~~~~~~~g~~~~---r~~qi~~~~~~~~~-~~~~~~---~~l~--~~~r~~l~~~~ 59 (354)
..+|.+||.+-.-|-| -++.||.|++++|. ...|+| .+-| ++|.+.|+..|
T Consensus 3 R~~LA~wlt~~~Np~faRv~VNRvW~~~fGrGlV~p~dD~g~~~~~PshPeLLd~La~~F 62 (266)
T PF07587_consen 3 RLALADWLTSPDNPLFARVIVNRVWQHLFGRGLVEPVDDFGPQGNPPSHPELLDWLAAEF 62 (266)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHcCCcCcCCHhhccCCCCCCCCHHHHHHHHHHH
Confidence 4678899987655544 35789999999984 334444 4555 68888888776
No 185
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.73 E-value=1.6e+02 Score=21.71 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhhCceeEEE
Q psy9577 279 AIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTI 334 (354)
Q Consensus 279 ~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~i 334 (354)
.-++|..++. ...+|.+|..++... ...+++-...+.+.|++.|+++..
T Consensus 11 g~E~A~~l~~----~g~~vtli~~~~~~~---~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 11 GIELAEALAE----LGKEVTLIERSDRLL---PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHH----TTSEEEEEESSSSSS---TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHH----hCcEEEEEeccchhh---hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 3456777777 457888888877543 333445566778889999887653
No 186
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.69 E-value=2e+02 Score=25.30 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=56.3
Q ss_pred EeeccCcccccccce----eCCCcC---chHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcccc
Q psy9577 221 VSLHASNNNLRNKLV----PISKKY---PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILT 293 (354)
Q Consensus 221 iSL~a~~~e~r~~l~----p~~~~~---~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~ 293 (354)
+|=..++++.|+.++ |.+-++ +++...+.+..- ...+.++.+=+ .+++|+.+|++---+ +
T Consensus 33 vnD~va~D~~rk~~lk~aaP~gvk~~~~~v~k~i~~i~~~--~~~~~~v~ll~-------~~p~d~~~lve~gv~----I 99 (159)
T COG3444 33 VNDEVANDDVRKTLLKQAAPPGVKLRFFSVEKAIDVINKP--KYDGQKVFLLF-------ENPQDVLRLVEGGVP----I 99 (159)
T ss_pred EccccccCHHHHHHHHhhcCCceEEEEEEHHHHHHHhcCC--CCCCeEEEEEE-------CCHHHHHHHHhcCCC----C
Confidence 444456666777766 332222 455555554432 12233444332 267888888773222 1
Q ss_pred ceeeeeeeCCCCCCC----CcccccchhHHHHHHHHhhCceeEEEecc
Q psy9577 294 SCKINLIPFNCFPNS----NLICSKNSRIKIFAKILMNSGIFVTIRKI 337 (354)
Q Consensus 294 ~~~vnLIp~n~~~~~----~~~~p~~e~l~~f~~~l~~~gi~v~ir~~ 337 (354)
..+|+=+.+..++. +.-.-++++++.|.+ |.+.|+.+.+|.-
T Consensus 100 -~~iNVG~m~~~~gk~~i~k~vsl~e~D~~af~~-L~~~Gv~~~~r~v 145 (159)
T COG3444 100 -KTINVGGMAFREGKKQITKAVSLDEKDIAAFKK-LKAKGVEVEVRKV 145 (159)
T ss_pred -cEEEEcCccCCCCcEEeecceeeCHHHHHHHHH-HHhcCcEEEEEEC
Confidence 34555444444442 223456788888865 5778999999863
No 187
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=26.83 E-value=37 Score=35.51 Aligned_cols=87 Identities=20% Similarity=0.264 Sum_probs=53.4
Q ss_pred ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeecc---CccccccccccceeeeeeccccccccceeEEe-e
Q psy9577 125 RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGM---GEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-S 200 (354)
Q Consensus 125 r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~Gm---GEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-s 200 (354)
-+.|.+|+++.+....++..+. | . .|.|..+ ..+-..++++.+.++.+.+ .|. .+|.+ +
T Consensus 117 l~~s~~e~l~~~~~~v~~ak~~--------G-~---~v~~~~e~~~Da~r~d~~~l~~~~~~~~~-~Ga----d~i~l~D 179 (524)
T PRK12344 117 LRTTLEENLAMIRDSVAYLKAH--------G-R---EVIFDAEHFFDGYKANPEYALATLKAAAE-AGA----DWVVLCD 179 (524)
T ss_pred cCCCHHHHHHHHHHHHHHHHHc--------C-C---eEEEccccccccccCCHHHHHHHHHHHHh-CCC----CeEEEcc
Confidence 4567899999888777766543 1 1 3445332 2234567888888888775 454 24554 8
Q ss_pred cccch-hc-hHhhhhcC--cceeEEeeccCcc
Q psy9577 201 TSGII-PM-IDKLAQEC--PVELAVSLHASNN 228 (354)
Q Consensus 201 T~G~~-p~-i~~l~~~~--~~~LaiSL~a~~~ 228 (354)
|+|+. |. +.++.+.+ ...+.+++|+-|+
T Consensus 180 TvG~~~P~~v~~li~~l~~~~~v~i~~H~HND 211 (524)
T PRK12344 180 TNGGTLPHEVAEIVAEVRAAPGVPLGIHAHND 211 (524)
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 99975 43 44444432 1245678888775
No 188
>smart00642 Aamy Alpha-amylase domain.
Probab=26.78 E-value=2e+02 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=17.3
Q ss_pred cchhHHHHHHHHhhCceeEEE
Q psy9577 314 KNSRIKIFAKILMNSGIFVTI 334 (354)
Q Consensus 314 ~~e~l~~f~~~l~~~gi~v~i 334 (354)
+.++++++.+.+.++|+.|.+
T Consensus 68 t~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 357888888999999998875
No 189
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=26.00 E-value=43 Score=32.11 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc---ccccccceeeeeeccccccccceeEEe-ec
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL---NYKSTIGALKLILSDHAYGLSRRHVIL-ST 201 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll---n~~~v~~~l~~l~~~~g~~~~~r~itv-sT 201 (354)
+.|.+|.++++....++.++. |..+..-+-+..|-|.. .++++.+.++.+.+ .|.. .|++ +|
T Consensus 112 ~~~~~e~l~~~~~~v~~ak~~---------g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~d----~i~l~DT 177 (287)
T PRK05692 112 NCSIAESLERFEPVAEAAKQA---------GVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFA-LGCY----EISLGDT 177 (287)
T ss_pred CCCHHHHHHHHHHHHHHHHHc---------CCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHH-cCCc----EEEeccc
Q ss_pred ccch-hc-hHhhhhcCcce---eEEeeccCcc
Q psy9577 202 SGII-PM-IDKLAQECPVE---LAVSLHASNN 228 (354)
Q Consensus 202 ~G~~-p~-i~~l~~~~~~~---LaiSL~a~~~ 228 (354)
.|+. |. +.++.+.+.-. +-+++|.-|+
T Consensus 178 ~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~ 209 (287)
T PRK05692 178 IGVGTPGQVRAVLEAVLAEFPAERLAGHFHDT 209 (287)
T ss_pred cCccCHHHHHHHHHHHHHhCCCCeEEEEecCC
No 190
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.99 E-value=3.8e+02 Score=26.66 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=66.7
Q ss_pred cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEeeccc
Q psy9577 124 VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSG 203 (354)
Q Consensus 124 ~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G 203 (354)
...+|.++.++-+.. +.+. .++.|-+ |-|-++.+ =.+.++.+.+ .+.. . .++.-+-.
T Consensus 20 ~~~~s~e~k~~ia~~----L~~~-----------GV~~IE~---G~p~~~~~-~~e~i~~i~~-~~~~--~-~i~~~~r~ 76 (378)
T PRK11858 20 GVVFTNEEKLAIARM----LDEI-----------GVDQIEA---GFPAVSED-EKEAIKAIAK-LGLN--A-SILALNRA 76 (378)
T ss_pred CCCCCHHHHHHHHHH----HHHh-----------CCCEEEE---eCCCcChH-HHHHHHHHHh-cCCC--e-EEEEEccc
Confidence 457888877766543 2221 2334433 34766632 2344555554 3431 1 22222212
Q ss_pred chhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHH
Q psy9577 204 IIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELI 283 (354)
Q Consensus 204 ~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La 283 (354)
....++...+.....+.+.+.+.+.-.+.++ +..+...++.+.+.+++.. .. +..|.+. .-.+--.+++.+.+++
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~-~~-G~~v~~~--~ed~~r~~~~~l~~~~ 151 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAK-DH-GLYVSFS--AEDASRTDLDFLIEFA 151 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH-HC-CCeEEEE--eccCCCCCHHHHHHHH
Confidence 2234555555443346677766654444443 2233344555666666443 33 3455544 2233333456777777
Q ss_pred HHhhcC
Q psy9577 284 SLMRKN 289 (354)
Q Consensus 284 ~ll~~~ 289 (354)
+.+.+.
T Consensus 152 ~~~~~~ 157 (378)
T PRK11858 152 KAAEEA 157 (378)
T ss_pred HHHHhC
Confidence 766663
No 191
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=25.78 E-value=4.3e+02 Score=25.67 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=57.2
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-+|.+++. .++++.++++.++.+.+ + |+++=+- |-+.+.++++.+++...+ .+..++-+
T Consensus 135 ~~lH~~~~~-----------~~~~e~~~al~~l~~~G---k--Ir~iGvS--n~~~~~~~~~~~~~~~~~--~~~~~~Q~ 194 (346)
T PRK09912 135 FYSHRVDEN-----------TPMEETASALAHAVQSG---K--ALYVGIS--SYSPERTQKMVELLREWK--IPLLIHQP 194 (346)
T ss_pred EEeCCCCCC-----------CCHHHHHHHHHHHHHcC---C--eeEEEec--CCCHHHHHHHHHHHHhcC--CCcEEeec
Confidence 678887642 35678889998887553 2 3444343 556677777777765422 23445557
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEecccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRG 339 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G 339 (354)
+||.+.-. . +-..+...++++|+.+..+.+.|
T Consensus 195 ~ynll~~~----~---~~~~ll~~~~~~gI~via~spl~ 226 (346)
T PRK09912 195 SYNLLNRW----V---DKSGLLDTLQNNGVGCIAFTPLA 226 (346)
T ss_pred cCCceecc----c---chhhHHHHHHHcCceEEEehhhc
Confidence 78875321 1 11246677788999888876654
No 192
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.69 E-value=1.9e+02 Score=27.81 Aligned_cols=23 Identities=9% Similarity=0.028 Sum_probs=12.4
Q ss_pred eeccCCCC-chHHHHHHHHHhhcC
Q psy9577 267 CMLHGIND-TDIHAIELISLMRKN 289 (354)
Q Consensus 267 vlI~GvND-s~ed~~~La~ll~~~ 289 (354)
++|-|+.. +.+++.++++..++.
T Consensus 79 pvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 79 PVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred CEEEEeccCCHHHHHHHHHHHHHh
Confidence 34555542 345566666666653
No 193
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=25.15 E-value=5.6e+02 Score=23.78 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=54.2
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-+|.+++.. ..++++.++++.++.+.+ + |+++=+- |-+.+++.++.+.... ....+|-+
T Consensus 94 ~~lH~~~~~~---------~~~~~~~~~~l~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~~----~~~~~~Q~ 153 (267)
T PRK11172 94 TLIHWPSPND---------EVSVEEFMQALLEAKKQG---L--TREIGIS--NFTIALMKQAIAAVGA----ENIATNQI 153 (267)
T ss_pred EEeCCCCCCC---------CCCHHHHHHHHHHHHHCC---C--CCEEEEc--cCCHHHHHHHHHhcCC----CCCeEEee
Confidence 6788876421 124577888888876543 2 2343333 4455666665554322 23456778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEecccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRG 339 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G 339 (354)
+||++.. . ..+....+++|+.+..+.+.|
T Consensus 154 ~~~~~~~-------~---~~ll~~~~~~gi~v~a~spl~ 182 (267)
T PRK11172 154 ELSPYLQ-------N---RKVVAFAKEHGIHVTSYMTLA 182 (267)
T ss_pred ecCCCCC-------c---HHHHHHHHHCCCEEEEECCCC
Confidence 8887642 1 256778888999998887764
No 194
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=24.90 E-value=2.4e+02 Score=28.30 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=70.8
Q ss_pred CccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC---cceeEEeeccCcccccccceeCCCcCchH
Q psy9577 168 GEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC---PVELAVSLHASNNNLRNKLVPISKKYPLK 244 (354)
Q Consensus 168 GEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~---~~~LaiSL~a~~~e~r~~l~p~~~~~~l~ 244 (354)
|=|....+.........++++++.+.+..|.. +-|++|++.-+++.+ .+.+.| .+ |+ =+|+-
T Consensus 57 GY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~-~p~VVpgi~~~I~~~T~~gd~Vvi--~t----------Pv--Y~PF~ 121 (388)
T COG1168 57 GYPYGSDELYAAIAHWFKQRHQWEIKPEWIVF-VPGVVPGISLAIRALTKPGDGVVI--QT----------PV--YPPFY 121 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCcceEEE-cCcchHhHHHHHHHhCcCCCeeEe--cC----------CC--chHHH
Confidence 45766644666666777887888887777655 457888754444331 122222 11 11 01222
Q ss_pred HHHHHHhhhhccCCCceeeeeeeeccCCCCc-hHHHHHHHHHhhcCccccceee--eeeeCCCCCCCCcccccchhHHHH
Q psy9577 245 ELILACHRYITYSPRHMITFEYCMLHGINDT-DIHAIELISLMRKNKILTSCKI--NLIPFNCFPNSNLICSKNSRIKIF 321 (354)
Q Consensus 245 ~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs-~ed~~~La~ll~~~~~~~~~~v--nLIp~n~~~~~~~~~p~~e~l~~f 321 (354)
+ .++ .. ++++ ++.+|..+ |+. .=|...|-+-+++ -.+++ -.=|-||.|... +.+++.++
T Consensus 122 ~---~i~----~n-~R~~-i~~pL~~~-~~~y~iD~~~LE~~~~~----~~vkl~iLCnPHNP~Grvw----t~eeL~~i 183 (388)
T COG1168 122 N---AIK----LN-GRKV-IENPLVED-DGRYEIDFDALEKAFVD----ERVKLFILCNPHNPTGRVW----TKEELRKI 183 (388)
T ss_pred H---HHh----hc-CcEE-Eecccccc-CCcEEecHHHHHHHHhc----CCccEEEEeCCCCCCCccc----cHHHHHHH
Confidence 2 222 23 3333 35555531 222 1156666655554 22232 222666655432 56788888
Q ss_pred HHHHhhCceeEE
Q psy9577 322 AKILMNSGIFVT 333 (354)
Q Consensus 322 ~~~l~~~gi~v~ 333 (354)
.++..++|+.|.
T Consensus 184 ~elc~kh~v~VI 195 (388)
T COG1168 184 AELCLRHGVRVI 195 (388)
T ss_pred HHHHHHcCCEEE
Confidence 888888887764
No 195
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=24.38 E-value=1.4e+02 Score=20.71 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHhCCCccchHHHHHHHHHh--CcCcchhhhhh
Q psy9577 7 LSPLKFVNYCKELGEMPFRAKQLQKWIHKF--GVSDFNKMTDL 47 (354)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~--~~~~~~~~~~l 47 (354)
++.+|+..++..+|.+.-.++++++-+-.. +.-+|+++..+
T Consensus 16 i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~ 58 (67)
T cd00052 16 ISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIA 58 (67)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHH
Confidence 678999999999888766777777766432 44556665444
No 196
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.32 E-value=1.2e+02 Score=21.69 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=31.6
Q ss_pred CCchHHHHHHHHHhhcCccccceee-eeeeCCCCCCCCcccccchhHHHHHHHHhhCceeEE
Q psy9577 273 NDTDIHAIELISLMRKNKILTSCKI-NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVT 333 (354)
Q Consensus 273 NDs~ed~~~La~ll~~~~~~~~~~v-nLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ 333 (354)
-|.+-.+.++++.+.+.+ ..| .+..+..-+ ..+-.-..+..+++.+.|+++|+.+.
T Consensus 9 ~d~pG~La~v~~~l~~~~----inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 9 ENKPGRLAAVTEILSEAG----INIRALSIADTSE-FGILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred cCCCChHHHHHHHHHHCC----CCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHHCCCEEE
Confidence 456667888888887733 222 222232222 12212122445688899999998864
No 197
>PF00062 Lys: C-type lysozyme/alpha-lactalbumin family; InterPro: IPR001916 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 22 GH22 from CAZY comprises enzymes with two known activities; lysozyme type C (3.2.1.17 from EC) and alpha-lactalbumins. Asp and/or the carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base. Alpha-lactalbumin [, ] is a milk protein that acts as the regulatory subunit of lactose synthetase, acting to promote the conversion of galactosyltransferase to lactose synthase, which is essential for milk production. In the mammary gland, alpha-lactalbumin changes the substrate specificity of galactosyltransferase from N-acetylglucosamine to glucose. Lysozymes (3.2.1.17 from EC) act as bacteriolytic enzymes by hydrolyzing the beta(1->4) bonds between N-acetylglucosamine and N-acetylmuramic acid in the peptidoglycan of prokaryotic cell walls. It has also been recruited for a digestive role in certain ruminants and colobine monkeys []. There are at least five different classes of lysozymes []: C (chicken type), G (goose type), phage-type (T4), fungi (Chalaropsis), and bacterial (Bacillus subtilis). There are few similarities in the sequences of the different types of lysozymes. Lysozyme type C and alpha-lactalbumin are similar both in terms of primary sequence and structure, and probably evolved from a common ancestral protein []. Around 35 to 40% of the residues are conserved in both proteins as well as the positions of the four disulphide bonds. There is, however, no similarity in function. Another significant difference between the two enzymes is that all lactalbumins have the ability to bind calcium [], while this property is restricted to only a few lysozymes []. The binding site was deduced using high resolution X-ray structure analysis and was shown to consist of three aspartic acid residues. It was first suggested that calcium bound to lactalbumin stabilised the structure, but recently it has been claimed that calcium controls the release of lactalbumin from the golgi membrane and that the pattern of ion binding may also affect the catalytic properties of the lactose synthetase complex.; PDB: 1HFX_A 1HMK_A 1HFY_B 1FKQ_A 1FKV_A 3B0K_B 1HML_A 1B9O_A 1A4V_A 3B0O_A ....
Probab=24.16 E-value=52 Score=27.70 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHhCCCccchHHHHHHH
Q psy9577 7 LSPLKFVNYCKELGEMPFRAKQLQKWI 33 (354)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~r~~qi~~~~ 33 (354)
++.=||...|...|.+.|+..+|-+|+
T Consensus 3 ~~rCeLa~~L~~~g~~g~~~~~l~~Wv 29 (125)
T PF00062_consen 3 FTRCELARELKNAGLDGYPGYSLANWV 29 (125)
T ss_dssp C-HHHHHHHHHHTTGTTBTCBGHHHHH
T ss_pred ccHhHHHHHHHHcCCCCcchhhhhhee
Confidence 455689999999999999999999998
No 198
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=24.11 E-value=3e+02 Score=25.97 Aligned_cols=14 Identities=0% Similarity=0.263 Sum_probs=6.8
Q ss_pred ccccccceeeeeec
Q psy9577 173 NYKSTIGALKLILS 186 (354)
Q Consensus 173 n~~~v~~~l~~l~~ 186 (354)
+++.+.+.++.+.+
T Consensus 20 D~~~l~~~i~~l~~ 33 (292)
T PRK03170 20 DFAALRKLVDYLIA 33 (292)
T ss_pred CHHHHHHHHHHHHH
Confidence 34445555555544
No 199
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.90 E-value=47 Score=31.06 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEe-ecccc
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-STSGI 204 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G~ 204 (354)
+.|.+|+++.+....++.++. | -.|.|.-+-.+-..++++.+.++.+.+ .|.. .|++ +|.|.
T Consensus 102 ~~~~~~~~~~~~~~i~~a~~~---------G---~~v~~~~~~~~~~~~~~~~~~~~~~~~-~G~~----~i~l~DT~G~ 164 (259)
T cd07939 102 GKDRAWVLDQLRRLVGRAKDR---------G---LFVSVGAEDASRADPDFLIEFAEVAQE-AGAD----RLRFADTVGI 164 (259)
T ss_pred CCCHHHHHHHHHHHHHHHHHC---------C---CeEEEeeccCCCCCHHHHHHHHHHHHH-CCCC----EEEeCCCCCC
Q ss_pred h-hc-hHhhhhcC--cceeEEeeccCcc
Q psy9577 205 I-PM-IDKLAQEC--PVELAVSLHASNN 228 (354)
Q Consensus 205 ~-p~-i~~l~~~~--~~~LaiSL~a~~~ 228 (354)
. |. +.++...+ ...+.+++|.-|+
T Consensus 165 ~~P~~v~~lv~~l~~~~~~~l~~H~Hn~ 192 (259)
T cd07939 165 LDPFTTYELIRRLRAATDLPLEFHAHND 192 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCC
No 200
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=23.86 E-value=1.5e+02 Score=25.57 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=41.6
Q ss_pred ccCC-CChhHHHHHHHHhCC---------CccchHHHHHHHHHhCc------CcchhhhhhHHHHHHhhhce
Q psy9577 3 NLLD-LSPLKFVNYCKELGE---------MPFRAKQLQKWIHKFGV------SDFNKMTDLSMSLRKKLKNS 58 (354)
Q Consensus 3 ~~~~-~~~~~l~~~~~~~g~---------~~~r~~qi~~~~~~~~~------~~~~~~~~l~~~~r~~l~~~ 58 (354)
.+++ .|++++.+.+++.+. .+-+--||.+||+.-+- -++...|.=|=++|+.|++.
T Consensus 20 ~iYG~~Tl~di~~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av 91 (146)
T COG0757 20 GIYGSTTLEDIEADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAV 91 (146)
T ss_pred CccCcccHHHHHHHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhc
Confidence 3444 788888888876442 23456899999998654 35788899999999999864
No 201
>PRK09389 (R)-citramalate synthase; Provisional
Probab=23.85 E-value=44 Score=34.62 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEe-ecccc
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-STSGI 204 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G~ 204 (354)
+.|.+|+++.+....++.++ .-..|.|..+-.+-.+++++.+.++.+.+ .|.. +|.+ +|+|.
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~------------~g~~v~~~~ed~~r~~~~~l~~~~~~~~~-~Ga~----~i~l~DTvG~ 168 (488)
T PRK09389 106 KKTREEVLETAVEAVEYAKD------------HGLIVELSGEDASRADLDFLKELYKAGIE-AGAD----RICFCDTVGI 168 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHH------------CCCEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCC----EEEEecCCCC
Q ss_pred h-hc-hHhhhhcC--cceeEEeeccCcc
Q psy9577 205 I-PM-IDKLAQEC--PVELAVSLHASNN 228 (354)
Q Consensus 205 ~-p~-i~~l~~~~--~~~LaiSL~a~~~ 228 (354)
. |. +.++...+ ...+-+++|+-|+
T Consensus 169 ~~P~~~~~lv~~l~~~~~v~l~~H~HND 196 (488)
T PRK09389 169 LTPEKTYELFKRLSELVKGPVSIHCHND 196 (488)
T ss_pred cCHHHHHHHHHHHHhhcCCeEEEEecCC
No 202
>COG1647 Esterase/lipase [General function prediction only]
Probab=23.78 E-value=1e+02 Score=28.82 Aligned_cols=75 Identities=13% Similarity=0.064 Sum_probs=45.4
Q ss_pred eeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCccccc----chhHHHHHHHHhhCcee-EEE-eccc
Q psy9577 265 EYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSK----NSRIKIFAKILMNSGIF-VTI-RKIR 338 (354)
Q Consensus 265 eyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~----~e~l~~f~~~l~~~gi~-v~i-r~~~ 338 (354)
-..||-|+.-|+.|++.|+++|++.| .-|+.=-.|=|-.....+-..+ -+++....+.|.+.|.. +.+ --|.
T Consensus 17 AVLllHGFTGt~~Dvr~Lgr~L~e~G--yTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSm 94 (243)
T COG1647 17 AVLLLHGFTGTPRDVRMLGRYLNENG--YTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSM 94 (243)
T ss_pred EEEEEeccCCCcHHHHHHHHHHHHCC--ceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46789999999999999999999854 4455433333332221222222 25566677778877763 222 2355
Q ss_pred ccc
Q psy9577 339 GND 341 (354)
Q Consensus 339 G~d 341 (354)
|-.
T Consensus 95 GGv 97 (243)
T COG1647 95 GGV 97 (243)
T ss_pred hhH
Confidence 543
No 203
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=23.49 E-value=1.2e+02 Score=22.33 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHhCCCccchHHHHHHHHH
Q psy9577 5 LDLSPLKFVNYCKELGEMPFRAKQLQKWIHK 35 (354)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~ 35 (354)
.+.+++|+.+.+.+.| +.-+..++.+||-.
T Consensus 13 TGk~~~~W~~~~~~~~-~~~k~~e~v~WLK~ 42 (61)
T PF14117_consen 13 TGKTLDEWLALAREGG-PLTKHGEIVAWLKD 42 (61)
T ss_pred HCcCHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence 3678889888888876 77889999999843
No 204
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.31 E-value=2.8e+02 Score=26.44 Aligned_cols=14 Identities=0% Similarity=0.079 Sum_probs=6.6
Q ss_pred ccccccceeeeeec
Q psy9577 173 NYKSTIGALKLILS 186 (354)
Q Consensus 173 n~~~v~~~l~~l~~ 186 (354)
+++.+.+.++.+.+
T Consensus 19 D~~~l~~lv~~~~~ 32 (294)
T TIGR02313 19 DEEALRELIEFQIE 32 (294)
T ss_pred CHHHHHHHHHHHHH
Confidence 34444555555443
No 205
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=23.19 E-value=1.1e+02 Score=19.27 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=19.1
Q ss_pred CCCChhHHHHHHHHhCCCccchHH
Q psy9577 5 LDLSPLKFVNYCKELGEMPFRAKQ 28 (354)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~r~~q 28 (354)
..|+.++|++++.+.|.+.---++
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~ 25 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKA 25 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHH
Confidence 468899999999999988654443
No 206
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.92 E-value=51 Score=32.86 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=52.7
Q ss_pred ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEe-eccc
Q psy9577 125 RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-STSG 203 (354)
Q Consensus 125 r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G 203 (354)
-+.|.+|+++.+....++..+. | . .|.|..+-..-.+++++.+.++.+.+ .|. ..|++ +|+|
T Consensus 107 ~~~s~~~~l~~~~~~v~~a~~~--------G-~---~v~~~~ed~~r~~~~~l~~~~~~~~~-~Ga----~~I~l~DT~G 169 (378)
T PRK11858 107 LKKTREEVLERMVEAVEYAKDH--------G-L---YVSFSAEDASRTDLDFLIEFAKAAEE-AGA----DRVRFCDTVG 169 (378)
T ss_pred hCCCHHHHHHHHHHHHHHHHHC--------C-C---eEEEEeccCCCCCHHHHHHHHHHHHh-CCC----CEEEEeccCC
Confidence 3467899999888777766542 2 1 24554433344567899999988876 454 24544 8999
Q ss_pred ch-hc-hHhhhhcC--cceeEEeeccCcc
Q psy9577 204 II-PM-IDKLAQEC--PVELAVSLHASNN 228 (354)
Q Consensus 204 ~~-p~-i~~l~~~~--~~~LaiSL~a~~~ 228 (354)
.. |. +.++...+ ...+.+++|+-|+
T Consensus 170 ~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd 198 (378)
T PRK11858 170 ILDPFTMYELVKELVEAVDIPIEVHCHND 198 (378)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 75 43 44444332 1134567777664
No 207
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=22.77 E-value=85 Score=21.03 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=23.6
Q ss_pred cCCCChhHHHHHHHHhCCC---ccchHHHHHHHHHhC
Q psy9577 4 LLDLSPLKFVNYCKELGEM---PFRAKQLQKWIHKFG 37 (354)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~---~~r~~qi~~~~~~~~ 37 (354)
|..++..||.+...++|.+ .+|-.++...|.+..
T Consensus 2 L~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~q 38 (43)
T PF07498_consen 2 LKSMTLSELREIAKELGIEGYSKMRKQELIFAILKAQ 38 (43)
T ss_dssp HHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHH
Confidence 5678999999999999976 456677776666543
No 208
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=22.16 E-value=4.8e+02 Score=24.02 Aligned_cols=90 Identities=13% Similarity=0.030 Sum_probs=50.6
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.++.... ..+++++.++++.+.+ .| +++=+- |-+.+.+.++ .+... .+..++-+
T Consensus 103 ~~lH~~~~~~~----------~~~~~~~~l~~l~~~G---~i--r~iGvs--~~~~~~l~~~---~~~~~--~~~~~~q~ 160 (283)
T PF00248_consen 103 LLLHWPDPSED----------ALEEVWEALEELKKEG---KI--RHIGVS--NFSPEQLEAA---LKIGS--IPPDVVQI 160 (283)
T ss_dssp EEESSSSTTSS----------HHHHHHHHHHHHHHTT---SE--EEEEEE--S--HHHHHHH---HTCTS--S-ESEEEE
T ss_pred ccccccccccc----------ccchhhhhhhhccccc---cc--cccccc--cccccccccc---ccccc--cccccccc
Confidence 56788875443 3678888888887553 22 333332 3344555554 22211 34667778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||+. . ......+.+...++|+.+....+.+.
T Consensus 161 ~~n~~-----~---~~~~~~l~~~~~~~gi~v~a~~~l~~ 192 (283)
T PF00248_consen 161 NYNLL-----N---RREEEGLLEFCREHGIGVIAYSPLAG 192 (283)
T ss_dssp E-BTT-----B---HBGGHHHHHHHHHTT-EEEEESTTGG
T ss_pred ccccc-----c---cccccccccccccccccccccccccc
Confidence 89987 1 12234556667778999988877665
No 209
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=21.86 E-value=32 Score=20.44 Aligned_cols=6 Identities=50% Similarity=1.077 Sum_probs=4.6
Q ss_pred hhhhhh
Q psy9577 343 NAACGQ 348 (354)
Q Consensus 343 ~aaCGq 348 (354)
-+||||
T Consensus 12 LsgCG~ 17 (24)
T PF13627_consen 12 LSGCGQ 17 (24)
T ss_pred HHhccc
Confidence 478887
No 210
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=21.74 E-value=6.3e+02 Score=23.20 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=56.6
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.++.... ...++++++.++.+.+ + |+++=+-+.+ .+.+.++.+... ....++-+
T Consensus 114 ~~lh~~~~~~~----------~~~~~~~~l~~l~~~G---~--ir~iGvS~~~--~~~l~~~~~~~~-----~~~~~~q~ 171 (285)
T cd06660 114 YLLHWPDPDTP----------DIEETLRALEELVKEG---K--IRAIGVSNFS--AEQLEEALAAAG-----VPPAVNQV 171 (285)
T ss_pred EEecCCCCCCC----------CHHHHHHHHHHHHHcC---C--ccEEEeeCCC--HHHHHHHHHhhC-----CCceEEec
Confidence 56888765322 3578888888876543 2 3454454333 556666655542 24567778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||+..... ...+.+..+++|+.+....+.|.
T Consensus 172 ~~n~~~~~~--------~~~~~~~~~~~gi~v~~~~~l~~ 203 (285)
T cd06660 172 EYNLLDRQA--------EEELLPYCREHGIGVIAYSPLAG 203 (285)
T ss_pred ccCcccCch--------HHHHHHHHHHcCcEEEEeccccC
Confidence 999864321 11566777889999998887765
No 211
>KOG2420|consensus
Probab=21.74 E-value=1.5e+02 Score=29.43 Aligned_cols=65 Identities=25% Similarity=0.193 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhCc-----CcchhhhhhHHHHHHhhhceeeeecCccccccccc-CCceeEEEecCCceeEEEe
Q psy9577 26 AKQLQKWIHKFGV-----SDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF-DGTRKWIFHVKKNIIETVF 92 (354)
Q Consensus 26 ~~qi~~~~~~~~~-----~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~-dgt~k~l~~~~g~~iE~v~ 92 (354)
+=.+|.|+|.-.- .|+..-+||..-+..+|++....-.+ .+..+|. ||++--.-.++++.||-|-
T Consensus 110 ~y~lys~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpIdp--~~piVSPaDGkIL~fG~v~~~~IEqVK 180 (382)
T KOG2420|consen 110 GYGLYARTFGCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPIDP--ASPLVSPADGKILHFGVVEDNEIEQVK 180 (382)
T ss_pred hhhhhhHhhccCchhccCchhhhhhhHHHHHhhccCCCCcccCC--CCceecCCCCcEEEEEEecCceeeEec
Confidence 3456888887653 44667789999999999987654333 3445554 9998766666678999774
No 212
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.71 E-value=56 Score=32.37 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEe-ecccc
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-STSGI 204 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G~ 204 (354)
+.|.+|+++.+....++..+. | ..|.|.-+=.+-.+++++.+.++.+.+ .|.. .|++ +|+|.
T Consensus 105 ~~s~~e~l~~~~~~i~~ak~~---------g---~~v~~~~ed~~r~~~~~l~~~~~~~~~-~Ga~----~i~l~DT~G~ 167 (365)
T TIGR02660 105 RKDRAWVLERLARLVSFARDR---------G---LFVSVGGEDASRADPDFLVELAEVAAE-AGAD----RFRFADTVGI 167 (365)
T ss_pred CcCHHHHHHHHHHHHHHHHhC---------C---CEEEEeecCCCCCCHHHHHHHHHHHHH-cCcC----EEEEcccCCC
Q ss_pred h-hc-hHhhhhcC--cceeEEeeccCcc
Q psy9577 205 I-PM-IDKLAQEC--PVELAVSLHASNN 228 (354)
Q Consensus 205 ~-p~-i~~l~~~~--~~~LaiSL~a~~~ 228 (354)
. |. +.++...+ ...+.+++|.-|+
T Consensus 168 ~~P~~v~~lv~~l~~~~~v~l~~H~HNd 195 (365)
T TIGR02660 168 LDPFSTYELVRALRQAVDLPLEMHAHND 195 (365)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCC
No 213
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.59 E-value=2.4e+02 Score=23.61 Aligned_cols=27 Identities=30% Similarity=0.161 Sum_probs=13.3
Q ss_pred HHHHHhhCceeEEEecccccchhhhhhh
Q psy9577 321 FAKILMNSGIFVTIRKIRGNDINAACGQ 348 (354)
Q Consensus 321 f~~~l~~~gi~v~ir~~~G~di~aaCGq 348 (354)
..+.+.+.|+.-..++.. -|-.|||--
T Consensus 98 A~~~l~~~g~~~~~~k~~-vD~~AA~iI 124 (130)
T TIGR00250 98 AESGLFARGGFRALRKGK-IDKAAAVII 124 (130)
T ss_pred HHHHHHHcCCChhhcccc-HhHHHHHHH
Confidence 344566666543333321 366666643
No 214
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.51 E-value=3.1e+02 Score=26.35 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=32.5
Q ss_pred eccCCCCc-hHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhhCceeEEEec
Q psy9577 268 MLHGINDT-DIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRK 336 (354)
Q Consensus 268 lI~GvNDs-~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~ 336 (354)
+|-|+..+ .+++.++++..++.| ....+-+-||- ++++..+-.+.|..+....++++.+-+
T Consensus 76 viaG~g~~~t~eai~lak~a~~~G--ad~il~v~PyY------~k~~~~gl~~hf~~ia~a~~lPvilYN 137 (299)
T COG0329 76 VIAGVGSNSTAEAIELAKHAEKLG--ADGILVVPPYY------NKPSQEGLYAHFKAIAEAVDLPVILYN 137 (299)
T ss_pred EEEecCCCcHHHHHHHHHHHHhcC--CCEEEEeCCCC------cCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 56666554 567788888888755 22222222221 123334445556666665666655543
No 215
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=21.34 E-value=2.3e+02 Score=23.97 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=13.1
Q ss_pred HHHHhhCceeEEEecccc-cchhhhhhhc
Q psy9577 322 AKILMNSGIFVTIRKIRG-NDINAACGQL 349 (354)
Q Consensus 322 ~~~l~~~gi~v~ir~~~G-~di~aaCGqL 349 (354)
.+.+.+.|..- +..++ -|-.|||-=|
T Consensus 105 ~~~l~~~~~~~--~~~k~~vD~~AA~iIL 131 (138)
T PRK00109 105 ERALADVGSRK--KLRKGVIDSLAAVIIL 131 (138)
T ss_pred HHHHHHcCCCh--hhcccchhHHHHHHHH
Confidence 34555555433 23333 4777777533
No 216
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=21.11 E-value=3.8e+02 Score=23.55 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=43.0
Q ss_pred eccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhhCceeEEEecccc
Q psy9577 268 MLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRG 339 (354)
Q Consensus 268 lI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G 339 (354)
+|=|=..+.+-+++-++.|.+++ .+..+.++-=|. +++.+.+|.+..+++|+.|.|-...|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fg--i~ye~~VvSAHR---------TPe~m~~ya~~a~~~g~~viIAgAGg 67 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFG--VPYEVRVVSAHR---------TPEKMFEYAEEAEERGVKVIIAGAGG 67 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcC--CCeEEEEEeccC---------CHHHHHHHHHHHHHCCCeEEEecCcc
Confidence 45554555666788888888866 445555554443 34679999999999999999876655
No 217
>PLN02321 2-isopropylmalate synthase
Probab=20.87 E-value=66 Score=34.50 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=53.9
Q ss_pred ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEe-eccc
Q psy9577 125 RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-STSG 203 (354)
Q Consensus 125 r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G 203 (354)
-+.|.+|+++.+.....+.++. | ...|.|.-.=.=-.+++++.+.++.+.+ .|. ..|++ +|+|
T Consensus 201 l~~t~ee~l~~~~~~V~~Ak~~--------G---~~~v~fs~EDa~rtd~d~l~~~~~~a~~-aGa----~~I~L~DTvG 264 (632)
T PLN02321 201 LRKTPDEVVEIARDMVKYARSL--------G---CEDVEFSPEDAGRSDPEFLYRILGEVIK-AGA----TTLNIPDTVG 264 (632)
T ss_pred hCCCHHHHHHHHHHHHHHHHHc--------C---CceEEEecccCCCCCHHHHHHHHHHHHH-cCC----CEEEeccccc
Confidence 3568999999988877776542 1 2246663311112357889999988876 453 25555 8999
Q ss_pred ch-hc-hHhhhh----cCc--ceeEEeeccCcc
Q psy9577 204 II-PM-IDKLAQ----ECP--VELAVSLHASNN 228 (354)
Q Consensus 204 ~~-p~-i~~l~~----~~~--~~LaiSL~a~~~ 228 (354)
+. |. +.++.+ ..+ ..+.+++|.-|+
T Consensus 265 ~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND 297 (632)
T PLN02321 265 YTLPSEFGQLIADIKANTPGIENVIISTHCQND 297 (632)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCC
Confidence 75 52 333333 322 135688888775
No 218
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.68 E-value=73 Score=21.78 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.7
Q ss_pred ccCCCChhHHHHHHHHhCCCc----cchHHHHH
Q psy9577 3 NLLDLSPLKFVNYCKELGEMP----FRAKQLQK 31 (354)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~----~r~~qi~~ 31 (354)
++..|+-+||.+.|.++|.+. ...+.+|.
T Consensus 2 d~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~ 34 (44)
T smart00540 2 DVDRLSDAELRAELKQYGLPPGPITDTTRKLYE 34 (44)
T ss_pred chhHcCHHHHHHHHHHcCCCCCCcCcchHHHHH
Confidence 566789999999999999875 34445544
No 219
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.63 E-value=60 Score=30.52 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=61.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeeeccccccccceeEEe-ecccc
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVIL-STSGI 204 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itv-sT~G~ 204 (354)
+.|.+|.++.+.....+.++. | . .|.|..+-.+-..++++.+.++.+.+ .|. ..|++ +|.|.
T Consensus 106 ~~~~~~~~~~~~~~i~~a~~~--------G-~---~v~~~~~~~~~~~~~~~~~~~~~~~~-~G~----~~i~l~DT~G~ 168 (268)
T cd07940 106 KKTREEVLERAVEAVEYAKSH--------G-L---DVEFSAEDATRTDLDFLIEVVEAAIE-AGA----TTINIPDTVGY 168 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHHc--------C-C---eEEEeeecCCCCCHHHHHHHHHHHHH-cCC----CEEEECCCCCC
Confidence 456777777776665555432 2 1 35666655566778899999988876 454 35665 89997
Q ss_pred h-hc-hHhhhhc----Ccc-eeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 205 I-PM-IDKLAQE----CPV-ELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 205 ~-p~-i~~l~~~----~~~-~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
. |. +.++... .+. .+.+++|+-|+ ....+.+.+.+++
T Consensus 169 ~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~----------~GlA~An~laAi~ 212 (268)
T cd07940 169 LTPEEFGELIKKLKENVPNIKVPISVHCHND----------LGLAVANSLAAVE 212 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCceeEEEEecCC----------cchHHHHHHHHHH
Confidence 5 43 4444333 331 26678888773 2344567777765
No 220
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A.
Probab=20.57 E-value=1.7e+02 Score=21.14 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=30.6
Q ss_pred cccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCc-Ccchhhhh---hHHHHHHhhhc
Q psy9577 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGV-SDFNKMTD---LSMSLRKKLKN 57 (354)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~-~~~~~~~~---l~~~~r~~l~~ 57 (354)
.|+..-+.+||.+. -|.....|++|.+|=-++|. .+++++.. +++...++|+.
T Consensus 6 idiN~as~~eL~~l---pgi~~~~A~~Iv~~R~~~G~f~s~~dL~~v~gi~~~~~~~l~~ 62 (65)
T PF12836_consen 6 IDINTASAEELQAL---PGIGPKQAKAIVEYREKNGPFKSLEDLKEVPGIGPKTYEKLKP 62 (65)
T ss_dssp EETTTS-HHHHHTS---TT--HHHHHHHHHHHHHH-S-SSGGGGGGSTT--HHHHHHHCC
T ss_pred ccCccCCHHHHHHc---CCCCHHHHHHHHHHHHhCcCCCCHHHHhhCCCCCHHHHHHHHh
Confidence 34555555554432 37888999999999877753 45555544 57777777664
No 221
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=20.33 E-value=3.2e+02 Score=26.01 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=10.9
Q ss_pred eccCCC-CchHHHHHHHHHhhcC
Q psy9577 268 MLHGIN-DTDIHAIELISLMRKN 289 (354)
Q Consensus 268 lI~GvN-Ds~ed~~~La~ll~~~ 289 (354)
++-|+. .+.+++.++++..++.
T Consensus 73 vi~gv~~~~t~~~i~la~~a~~~ 95 (290)
T TIGR00683 73 LIAQVGSVNLKEAVELGKYATEL 95 (290)
T ss_pred EEEecCCCCHHHHHHHHHHHHHh
Confidence 444443 2344555566665553
No 222
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=20.18 E-value=1.3e+02 Score=29.00 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=16.8
Q ss_pred eeeeCCCCCC---CCcccccchhHHHHHHHHhhCceeE
Q psy9577 298 NLIPFNCFPN---SNLICSKNSRIKIFAKILMNSGIFV 332 (354)
Q Consensus 298 nLIp~n~~~~---~~~~~p~~e~l~~f~~~l~~~gi~v 332 (354)
+|+|+...+. -++.++..+++++|.+.+++.|+.+
T Consensus 70 ~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irl 107 (303)
T PRK02308 70 SLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRL 107 (303)
T ss_pred CcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 4555543331 1334444555555555555555543
No 223
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=20.15 E-value=3.3e+02 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=9.8
Q ss_pred eccCCCC-chHHHHHHHHHhhc
Q psy9577 268 MLHGIND-TDIHAIELISLMRK 288 (354)
Q Consensus 268 lI~GvND-s~ed~~~La~ll~~ 288 (354)
+|.|+.+ +.+++.++++.+++
T Consensus 76 viagvg~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 76 LIAQVGSVNTAEAQELAKYATE 97 (293)
T ss_pred EEecCCCCCHHHHHHHHHHHHH
Confidence 4445432 34445555555544
Done!