Query psy9577
Match_columns 354
No_of_seqs 299 out of 2039
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:12:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 3.3E-95 1.1E-99 719.3 19.6 342 1-352 17-361 (404)
2 2yx0_A Radical SAM enzyme; pre 100.0 5E-33 1.7E-37 269.6 8.5 262 44-332 17-311 (342)
3 2z2u_A UPF0026 protein MJ0257; 100.0 1.9E-29 6.4E-34 240.9 6.3 265 48-350 3-301 (311)
4 3c8f_A Pyruvate formate-lyase 99.9 6.4E-27 2.2E-31 213.6 9.3 218 87-333 8-244 (245)
5 3can_A Pyruvate-formate lyase- 99.9 3E-22 1E-26 176.6 9.6 158 161-334 6-180 (182)
6 1tv8_A MOAA, molybdenum cofact 99.8 3.1E-19 1.1E-23 172.2 12.1 179 99-308 14-202 (340)
7 3t7v_A Methylornithine synthas 99.8 1.3E-19 4.3E-24 175.9 4.3 245 41-326 2-266 (350)
8 2a5h_A L-lysine 2,3-aminomutas 99.8 3.6E-18 1.2E-22 169.9 13.3 202 98-337 114-331 (416)
9 3iix_A Biotin synthetase, puta 99.8 8.7E-19 3E-23 169.2 8.2 192 103-326 57-257 (348)
10 1r30_A Biotin synthase; SAM ra 99.6 7E-15 2.4E-19 143.6 10.1 194 103-327 69-275 (369)
11 2qgq_A Protein TM_1862; alpha- 99.5 1.7E-13 5.8E-18 130.5 12.3 184 98-309 3-200 (304)
12 1olt_A Oxygen-independent copr 99.1 2.3E-10 7.9E-15 114.8 10.7 212 98-332 52-284 (457)
13 4fhd_A Spore photoproduct lyas 97.8 1.5E-05 5.1E-10 77.5 5.6 159 103-286 111-280 (368)
14 1hfe_L Protein (Fe-only hydrog 92.0 0.0041 1.4E-07 61.4 -6.1 142 162-332 110-274 (421)
15 3lg3_A Isocitrate lyase; conse 72.6 9 0.00031 37.6 7.7 99 226-336 246-352 (435)
16 2l69_A Rossmann 2X3 fold prote 68.4 24 0.00083 27.1 7.7 75 242-336 34-108 (134)
17 3lot_A Uncharacterized protein 62.6 38 0.0013 31.7 9.5 165 126-326 28-224 (314)
18 1xw3_A Sulfiredoxin; retroredu 58.9 5.5 0.00019 31.7 2.6 55 296-351 13-77 (110)
19 3no5_A Uncharacterized protein 51.2 88 0.003 28.5 9.8 163 127-326 27-194 (275)
20 3i4e_A Isocitrate lyase; struc 50.4 19 0.00064 35.4 5.3 84 241-336 268-352 (439)
21 3eol_A Isocitrate lyase; seatt 48.2 26 0.0009 34.3 6.0 84 241-336 263-347 (433)
22 1yzs_A Sulfiredoxin; PARB doma 42.9 13 0.00044 30.0 2.4 55 296-350 24-87 (121)
23 3e02_A Uncharacterized protein 40.8 1.9E+02 0.0066 26.7 10.5 160 127-322 29-218 (311)
24 1iv0_A Hypothetical protein; r 39.9 61 0.0021 24.7 5.8 61 274-339 35-95 (98)
25 1ydo_A HMG-COA lyase; TIM-barr 38.7 10 0.00036 35.2 1.4 101 126-251 114-224 (307)
26 3e49_A Uncharacterized protein 35.4 2.7E+02 0.0093 25.7 11.1 160 127-322 29-218 (311)
27 3n6q_A YGHZ aldo-keto reductas 31.2 1.6E+02 0.0054 27.2 8.4 93 221-340 135-227 (346)
28 1f8m_A Isocitrate lyase, ICL; 30.6 1.2E+02 0.004 29.7 7.4 84 241-336 264-348 (429)
29 3rmj_A 2-isopropylmalate synth 30.0 17 0.0006 34.7 1.4 104 108-228 100-214 (370)
30 1vp5_A 2,5-diketo-D-gluconic a 29.6 2.7E+02 0.0091 25.2 9.5 85 221-340 121-205 (298)
31 3chv_A Prokaryotic domain of u 29.6 2.3E+02 0.0079 25.8 9.0 162 127-326 31-198 (284)
32 1hw6_A 2,5-diketo-D-gluconic a 29.4 3E+02 0.01 24.4 9.9 88 221-340 105-192 (278)
33 3h7r_A Aldo-keto reductase; st 29.1 3.1E+02 0.011 25.1 10.0 98 221-340 127-227 (331)
34 3up8_A Putative 2,5-diketo-D-g 28.5 2.8E+02 0.0095 25.1 9.5 87 221-340 125-211 (298)
35 2ftp_A Hydroxymethylglutaryl-C 25.8 29 0.00098 32.0 2.1 102 126-252 116-227 (302)
36 3lut_A Voltage-gated potassium 25.7 2.8E+02 0.0096 25.7 9.2 93 221-340 155-248 (367)
37 3eeg_A 2-isopropylmalate synth 25.1 23 0.00078 33.2 1.3 104 108-228 94-208 (325)
38 3erp_A Putative oxidoreductase 24.6 1.8E+02 0.0063 26.9 7.6 92 221-340 156-247 (353)
39 3c6c_A 3-keto-5-aminohexanoate 24.3 1.5E+02 0.0052 27.6 6.7 58 127-202 45-105 (316)
40 3fa4_A 2,3-dimethylmalate lyas 24.1 1.8E+02 0.0063 26.8 7.2 52 242-304 168-219 (302)
41 1mzr_A 2,5-diketo-D-gluconate 23.7 4E+02 0.014 23.9 10.0 88 221-340 125-212 (296)
42 1ydn_A Hydroxymethylglutaryl-C 23.0 2.9E+02 0.01 24.7 8.4 141 125-290 21-168 (295)
43 2f1f_A Acetolactate synthase i 22.8 3.3E+02 0.011 22.6 8.1 85 242-336 57-151 (164)
44 3eau_A Voltage-gated potassium 22.8 4.2E+02 0.014 23.8 9.6 94 221-340 121-214 (327)
45 3krb_A Aldose reductase; ssgci 22.6 3E+02 0.01 25.1 8.6 78 241-340 152-229 (334)
46 4b4t_W RPN10, 26S proteasome r 22.5 3.7E+02 0.013 24.1 8.9 48 270-327 116-163 (268)
47 3c8y_A Iron hydrogenase 1; dit 22.0 4.9 0.00017 40.9 -4.4 38 162-206 233-273 (574)
48 3h7u_A Aldo-keto reductase; st 21.9 3E+02 0.01 25.2 8.4 77 241-339 154-230 (335)
49 2cho_A Glucosaminidase, hexosa 21.9 1.1E+02 0.0038 31.8 5.8 14 241-254 141-154 (716)
50 2v5c_A O-GLCNACASE NAGJ; glyco 21.5 94 0.0032 31.6 5.1 15 241-255 163-177 (594)
51 1yx7_A Calsensin, LAN3-6 antig 21.5 1.2E+02 0.0043 20.6 4.5 46 7-52 24-79 (83)
52 2cw6_A Hydroxymethylglutaryl-C 21.4 33 0.0011 31.4 1.5 89 126-228 113-210 (298)
53 2do1_A Nuclear protein HCC-1; 20.9 71 0.0024 21.9 2.8 22 2-23 8-29 (55)
54 3e96_A Dihydrodipicolinate syn 20.8 1.3E+02 0.0046 27.6 5.7 22 268-289 84-105 (316)
55 2v5d_A O-GLCNACASE NAGJ; famil 20.2 90 0.0031 32.5 4.7 15 241-255 163-177 (737)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=3.3e-95 Score=719.32 Aligned_cols=342 Identities=49% Similarity=0.852 Sum_probs=310.7
Q ss_pred CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI 80 (354)
Q Consensus 1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l 80 (354)
+.+|++|+++||++++.++|+|+|||+|||+|||++++.||++||||||++|++|++.|.+..++++..+.|.|||+|||
T Consensus 17 ~~~l~~~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l 96 (404)
T 3rfa_A 17 KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWA 96 (404)
T ss_dssp CEEGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHSCCCCGGGCTTSCHHHHHHHHHHEECCCCEEEEEEECTTSCEEEE
T ss_pred CCCcccCCHHHHHHHHHHcCCcchHHHHHHHHHHhcCCCChHHhcccCHHHHHHHHhcCCCCCCceEEEEECCCCCEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577 81 FHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT 160 (354)
Q Consensus 81 ~~~~g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~ 160 (354)
|+++|+.||||+||+++|.|+|||+|+||||+|.||+++.+++.|+||++||++|+..+..+++.++ .+|+.+++
T Consensus 97 ~~ldg~~iEtV~i~~~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g-----~~gg~~i~ 171 (404)
T 3rfa_A 97 IAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAK-----VTGQRPIT 171 (404)
T ss_dssp EEETTEEEEEEEEECSSCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHH-----HHSSCSCS
T ss_pred EEcCCceEEEEEEecCCCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcc-----cccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999998887764320 01345799
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCc
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~ 240 (354)
+||||||||||+|++++.++++.+++..|++||.|+|+|||||++|.++++++..++.|+||||+++++.|++|||++++
T Consensus 172 ~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~ 251 (404)
T 3rfa_A 172 NVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKK 251 (404)
T ss_dssp EEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGT
T ss_pred EEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhhcceEEecccCCCHHHHHHhcCCccC
Confidence 99999999999999999999999998679999999999999999998999998877789999999999999999999999
Q ss_pred CchHHHHHHHhhhhccCCCc---eeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchh
Q psy9577 241 YPLKELILACHRYITYSPRH---MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR 317 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~---~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~ 317 (354)
++++++++++++|.... +. +|+|||+||||+||+++++.+|++|+++ ++++||||||||+++..|++|+.++
T Consensus 252 ~~le~vl~ai~~~~~~~-g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~----l~~~VnLIpynP~~~~~~~~ps~e~ 326 (404)
T 3rfa_A 252 YNIETFLAAVRRYLEKS-NANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSR 326 (404)
T ss_dssp SCHHHHHHHHHHHHHHC-TTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTT----SCEEEEEEECCCCTTCCCCBCCHHH
T ss_pred CCHHHHHHHHHHHHHHh-CCCcccEEEEEEEecCCCCCHHHHHHHHHHHHc----CCCcEEEEeccCCCCCCCCCCCHHH
Confidence 99999999998887655 35 8999999999999999999999999999 6789999999999999999999999
Q ss_pred HHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577 318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352 (354)
Q Consensus 318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~ 352 (354)
+++|+++|+++|+.|+||+++|+||+||||||+.+
T Consensus 327 i~~f~~iL~~~Gi~vtiR~~~G~di~aaCGQL~~~ 361 (404)
T 3rfa_A 327 IDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGD 361 (404)
T ss_dssp HHHHHHHHHHTTCEEEECCCCCC------------
T ss_pred HHHHHHHHHHcCCcEEEcCCCCcccccccccchhh
Confidence 99999999999999999999999999999999865
No 2
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.97 E-value=5e-33 Score=269.61 Aligned_cols=262 Identities=16% Similarity=0.153 Sum_probs=202.5
Q ss_pred hhhhHHHHHHhhhc-eeeeecCccccccccc----CCceeEEEecCCceeEEEeeecCCCceeEEecc-ccceEeeeeec
Q psy9577 44 MTDLSMSLRKKLKN-SVYIKAPHIMSDQISF----DGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQ-VGCAINCIFCS 117 (354)
Q Consensus 44 ~~~l~~~~r~~l~~-~~~~~~~~~~~~~~s~----dgt~k~l~~~~g~~iE~v~i~~~~r~tlcvSsq-~GC~~~C~fC~ 117 (354)
.+|+|+.+|+.|++ .|.+.. +.|. ++|.|+|+ -+|..+|+|+++...+..++++.+ .|||++|.||+
T Consensus 17 ~~~~~~~~r~~l~~~~~~~~~------~~s~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~l~i~~~~~gCnl~C~fC~ 89 (342)
T 2yx0_A 17 NPNMPKEVAELFRKQHYEIVG------RHSGVKLCHWLKKSLT-EGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCW 89 (342)
T ss_dssp CCSSCHHHHHHHHHTTCEEEB------TTEEECCCTTHHHHHH-HCCCCHHHHHHCCCGGGEEEEESCSSCCSBCCTTCC
T ss_pred cCcchHHHHHHHhhCCceEec------cccceEeccccHhhhc-CCCccceeEEeeecCCCeEEEEeChhhhhCcCcccC
Confidence 37899999999987 577642 2233 66777765 128889999998877788888888 49999999999
Q ss_pred CCCCc------ccccchhhhhhhheehhhhhhhhhcCcccCCcC-----------ceeEEeeeeeccCccccccccccce
Q psy9577 118 TGRQG------FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG-----------KRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 118 tg~~g------~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~g-----------g~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
++... ..++++++||++++......+... -+| ...+++|+|+|+||||+++ ++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~------~~g~~~v~~~~~~e~~~~~~v~~sggGEPll~~-~l~~l 162 (342)
T 2yx0_A 90 RPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIG------YKGNPKVDKKKFEEAWNPTHAAISLSGEPMLYP-YMGDL 162 (342)
T ss_dssp CSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTT------CC--CCSCHHHHHHHTSCCEEEECSSSCGGGST-THHHH
T ss_pred CCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhc------cCCCcccchhhhhhccCCCEEEEcCCCcccchh-hHHHH
Confidence 87432 357899999999998765443210 000 0136789999779999995 89999
Q ss_pred eeeeeccccccccceeEEeecccchhc-hHhhhhc--CcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 181 LKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQE--CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~--~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
++.+++ .|+ +++++|||..|. +++|.+. ....+.+|||+++++.|+++.+.+.++++++++++++.+.+.
T Consensus 163 l~~~~~-~g~-----~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~~~~~~~~~~~i~~l~~~- 235 (342)
T 2yx0_A 163 VEEFHK-RGF-----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDL- 235 (342)
T ss_dssp HHHHHH-TTC-----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHHHHTTC-
T ss_pred HHHHHH-CCC-----cEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCcccHHHHHHHHHHHHHhC-
Confidence 999987 576 899999998865 6666653 256799999999999999999876678899999999988754
Q ss_pred CCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC-----CcccccchhHHHHHHHHhhC--ce
Q psy9577 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS-----NLICSKNSRIKIFAKILMNS--GI 330 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~-----~~~~p~~e~l~~f~~~l~~~--gi 330 (354)
+.++.++++++||.||++ +.++++++++++ +.+|+++||++.+.. .+.+|+.+++.+|.+.+.+. ++
T Consensus 236 -g~~v~i~~~l~~g~n~~~--~~~l~~~l~~~~---~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~ 309 (342)
T 2yx0_A 236 -PTRTVVRLTLVKGENMHS--PEKYAKLILKAR---PMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGY 309 (342)
T ss_dssp -SSEEEEEEEECTTTTCCC--HHHHHHHHHHHC---CSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTE
T ss_pred -CCCEEEEEEEECCccHHH--HHHHHHHHHHcC---CCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCC
Confidence 368999999999999974 899999999833 478999999998764 35688899999999999875 44
Q ss_pred eE
Q psy9577 331 FV 332 (354)
Q Consensus 331 ~v 332 (354)
.+
T Consensus 310 ~I 311 (342)
T 2yx0_A 310 HI 311 (342)
T ss_dssp EE
T ss_pred ce
Confidence 44
No 3
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.9e-29 Score=240.92 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=180.7
Q ss_pred HHHHHHhhhce-eeeecCcccccccccCCceeEEEec--C-CceeEEEeeecCCCceeEEecc-ccceEeeeeecCCC--
Q psy9577 48 SMSLRKKLKNS-VYIKAPHIMSDQISFDGTRKWIFHV--K-KNIIETVFIPEKNRNTLCISTQ-VGCAINCIFCSTGR-- 120 (354)
Q Consensus 48 ~~~~r~~l~~~-~~~~~~~~~~~~~s~dgt~k~l~~~--~-g~~iE~v~i~~~~r~tlcvSsq-~GC~~~C~fC~tg~-- 120 (354)
|+.+++.|... |.+.. .|.+++.+|+.+. . |..+++++++...+.++|++++ .|||++|.||+++.
T Consensus 3 ~~~~~~~l~~~gy~~~~-------~s~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~l~i~~t~~~Cn~~C~fC~~~~~~ 75 (311)
T 2z2u_A 3 PEEIYKILRKQRYQIDG-------HTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWRVLPR 75 (311)
T ss_dssp CHHHHHHHHTTTCEEET-------TEEEECCTTHHHHHTTCCCCHHHHHHCCCGGGEEEEESCSSCCSCC----------
T ss_pred chHHHHHHHhcCceeec-------ccceeeccChHhhhcCCCceEEEEEeeecCCCeEEeccChhHHhCcCcccCCCCCC
Confidence 55666677553 54433 2334444443333 3 7788888888888899999999 69999999999763
Q ss_pred -Cc-------ccccchhhhhhhheehhhhhhhhhcCcccCCcC------------ceeEEeeeeeccCccccccccccce
Q psy9577 121 -QG-------FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQG------------KRQITNIVMMGMGEPLLNYKSTIGA 180 (354)
Q Consensus 121 -~g-------~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~g------------g~~i~~Vvf~GmGEPlln~~~v~~~ 180 (354)
.+ ..+.++++||++++......+... -+| +..+++|+|+|+||||++ +.+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~------~~g~~~v~~~~r~~~~~~~~~i~~s~gGEPll~-~~l~~l 148 (311)
T 2z2u_A 76 DIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMG------YAGVLDRVGEKKFKEALEPKHVAISLSGEPTLY-PYLDEL 148 (311)
T ss_dssp ------CCSCCCCCCCHHHHHHHHHHHHHHHHHG------GGGGHHHHCHHHHHHHTSCCEEEECSSSCGGGS-TTHHHH
T ss_pred cccccccccCccccCCHHHHHHHHHHHHHHHhhc------cCCCcCcchhhhhhhccCCCEEEEeCCcCccch-hhHHHH
Confidence 11 147799999999887654332100 000 013578999956999996 679999
Q ss_pred eeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCC
Q psy9577 181 LKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPR 259 (354)
Q Consensus 181 l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~ 259 (354)
++.+++ .|+ +++++|||..|. +++| ....+.+||++++++.|+++++. .+.+++.++++++.+.+ . +
T Consensus 149 i~~~~~-~g~-----~~~l~TNG~~~~~l~~L---~~~~v~isld~~~~~~~~~i~~~-~~~~~~~v~~~i~~l~~-~-g 216 (311)
T 2z2u_A 149 IKIFHK-NGF-----TTFVVSNGILTDVIEKI---EPTQLYISLDAYDLDSYRRICGG-KKEYWESILNTLDILKE-K-K 216 (311)
T ss_dssp HHHHHH-TTC-----EEEEEECSCCHHHHHHC---CCSEEEEECCCSSTTTC----CC-CHHHHHHHHHHHHHHTT-S-S
T ss_pred HHHHHH-CCC-----cEEEECCCCCHHHHHhC---CCCEEEEEeecCCHHHHHHHhCC-ccchHHHHHHHHHHHHh-c-C
Confidence 999987 576 899999999753 2223 34578999999999999999875 34679999999998764 3 4
Q ss_pred ceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc-----ccccchhHHHHHHHHhh-CceeEE
Q psy9577 260 HMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL-----ICSKNSRIKIFAKILMN-SGIFVT 333 (354)
Q Consensus 260 ~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~-----~~p~~e~l~~f~~~l~~-~gi~v~ 333 (354)
++.++++++||+|| ++.++++++++++ +..|+++||+|++...+ .+|+.+++.+|.+.+.+ .|+.+.
T Consensus 217 -~v~i~~~~~~g~n~---~~~~~~~~~~~~~---~~~i~l~~~~p~g~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~ 289 (311)
T 2z2u_A 217 -RTCIRTTLIRGYND---DILKFVELYERAD---VHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSSYKLI 289 (311)
T ss_dssp -SEEEEEEECTTTTC---CGGGTHHHHHHHT---CSEEEEEECC------------CCCCHHHHHHHHHHHHTSSSEEEE
T ss_pred -CEEEEEEEECCcch---hHHHHHHHHHHcC---CCEEEEEeeEEccccccccccccCCCHHHHHHHHHHHHHhcCceEE
Confidence 89999999999999 6788899988732 46799999999987664 47889999999999987 686654
Q ss_pred Eecccccchhhhhhhcc
Q psy9577 334 IRKIRGNDINAACGQLS 350 (354)
Q Consensus 334 ir~~~G~di~aaCGqL~ 350 (354)
|.....+|..|.
T Consensus 290 -----~~~~~~~~~l~~ 301 (311)
T 2z2u_A 290 -----DDSEDSRVALLQ 301 (311)
T ss_dssp -----EEEGGGTEEEEE
T ss_pred -----eccCcceEEEEe
Confidence 555556666554
No 4
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.94 E-value=6.4e-27 Score=213.61 Aligned_cols=218 Identities=17% Similarity=0.249 Sum_probs=170.5
Q ss_pred eeEEEeeecCCCceeEEeccccceEeeeeecCCCC---cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeee
Q psy9577 87 IIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ---GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIV 163 (354)
Q Consensus 87 ~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~---g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vv 163 (354)
.||...+.+..+....+.+ .|||++|.||..+.. ...+.++++++++++.....+++ ..+..|+
T Consensus 8 ~~~~~~~~~~pg~~~~i~t-~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~------------~~~~~i~ 74 (245)
T 3c8f_A 8 SFESCGTVDGPGIRFITFF-QGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMN------------ASGGGVT 74 (245)
T ss_dssp EEEEEECTTSSSEEEEEEE-SCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHT------------STTCEEE
T ss_pred cceeccccCCCCcEEEEEe-CCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhc------------CCCCeEE
Confidence 4566666655555556655 499999999998642 23567899999999876554431 1245799
Q ss_pred eeccCccccccccccceeeeeeccccccccceeEEeecccch---h-chHhhhhcCcceeEEeeccCcccccccceeCCC
Q psy9577 164 MMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGII---P-MIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239 (354)
Q Consensus 164 f~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~---p-~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~ 239 (354)
|+| |||+++++.+.++++.+++ .|+ +++++|||.. + .+.++.+..+ .+.+|+++++++.++++.+.
T Consensus 75 ~~G-GEP~l~~~~l~~l~~~~~~-~~~-----~i~i~Tng~~~~~~~~~~~l~~~~~-~v~isld~~~~~~~~~~~~~-- 144 (245)
T 3c8f_A 75 ASG-GEAILQAEFVRDWFRACKK-EGI-----HTCLDTNGFVRRYDPVIDELLEVTD-LVMLDLKQMNDEIHQNLVGV-- 144 (245)
T ss_dssp EEE-SCGGGGHHHHHHHHHHHHT-TTC-----CEEEEECCCCCCCCHHHHHHHHTCS-EEEEECCCSSHHHHHHHHSS--
T ss_pred EEC-CCcCCCHHHHHHHHHHHHH-cCC-----cEEEEeCCCcCcCHHHHHHHHHhCC-EEEEeCCCCCHHHhhhccCC--
Confidence 999 9999998878999999987 576 7999999964 2 3556665544 58999999999999998763
Q ss_pred cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC-----------
Q psy9577 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS----------- 308 (354)
Q Consensus 240 ~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~----------- 308 (354)
+.++++++++.+.+. +.++.+++++++|+||+.+++.++++++++++ ....+++.||+|.+..
T Consensus 145 --~~~~~~~~i~~l~~~--g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (245)
T 3c8f_A 145 --SNHRTLEFAKYLANK--NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMG--NVEKIELLPYHELGKHKWVAMGEEYKL 218 (245)
T ss_dssp --CSHHHHHHHHHHHHH--TCCEEEEEEECTTTTCCHHHHHHHHHHHHHHC--CEEEEEEEECCCCSHHHHHHTTCCCTT
T ss_pred --CHHHHHHHHHHHHhc--CCEEEEEEeecCCCCCCHHHHHHHHHHHHhcC--CCceeEEEeccccChhHHHhhCccccc
Confidence 358999999987754 35899999999999999999999999999843 1267899999997643
Q ss_pred -CcccccchhHHHHHHHHhhCceeEE
Q psy9577 309 -NLICSKNSRIKIFAKILMNSGIFVT 333 (354)
Q Consensus 309 -~~~~p~~e~l~~f~~~l~~~gi~v~ 333 (354)
.+++|+.++++++.+.+++.|+.|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~G~~v~ 244 (245)
T 3c8f_A 219 DGVKPPKKETMERVKGILEQYGHKVM 244 (245)
T ss_dssp TTCCCCCHHHHHHHHHHHHTTTCCBC
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCeec
Confidence 2467888999999999999998764
No 5
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.87 E-value=3e-22 Score=176.60 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=129.3
Q ss_pred eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCC
Q psy9577 161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPIS 238 (354)
Q Consensus 161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~ 238 (354)
+|+|+| ||||++++.+.++++.+++ .|+ +++++|||+.+ .++++.+..+ .+.+|||+++++.|+++++.
T Consensus 6 ~v~~tG-GEPll~~~~~~~l~~~~~~-~g~-----~~~l~TNG~l~~~~~~~l~~~~d-~v~isld~~~~~~~~~~~g~- 76 (182)
T 3can_A 6 GVTFCG-GEPLLHPEFLIDILKRCGQ-QGI-----HRAVDTTLLARKETVDEVMRNCE-LLLIDLKSMDSTVHQTFCDV- 76 (182)
T ss_dssp CEEECS-STGGGSHHHHHHHHHHHHH-TTC-----CEEEECTTCCCHHHHHHHHHTCS-EEEEECCCSCHHHHHHHHSS-
T ss_pred EEEEEc-ccccCCHHHHHHHHHHHHH-CCC-----cEEEECCCCCCHHHHHHHHhhCC-EEEEECCCCCHHHHHHHhCC-
Confidence 599999 9999998888899999987 577 89999999864 2555665544 58999999999999999863
Q ss_pred CcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcC-ccccceeeeeeeCCCCCCCCc-------
Q psy9577 239 KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKN-KILTSCKINLIPFNCFPNSNL------- 310 (354)
Q Consensus 239 ~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~-~~~~~~~vnLIp~n~~~~~~~------- 310 (354)
+.+.++++++.+.+. +.++.++++++||+||+.+++.+++++++++ + ....++++||+|.+..+|
T Consensus 77 ---~~~~i~~~i~~l~~~--g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g--~~~~~~l~~~~p~g~~~~~~l~~~y 149 (182)
T 3can_A 77 ---PNELILKNIRRVAEA--DFPYYIRIPLIEGVNADEKNIKLSAEFLASLPR--HPEIINLLPYHDIGKGKHAKLGSIY 149 (182)
T ss_dssp ---CSHHHHHHHHHHHHT--TCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSS--CCSEEEEEECCC-------------
T ss_pred ---CHHHHHHHHHHHHhC--CCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcC--ccceEEEecCcccCHHHHHHhCCcC
Confidence 358999999987754 3689999999999999999999999999984 3 115789999999875432
Q ss_pred -----ccccchh--HHHHHHHHhhCceeEEE
Q psy9577 311 -----ICSKNSR--IKIFAKILMNSGIFVTI 334 (354)
Q Consensus 311 -----~~p~~e~--l~~f~~~l~~~gi~v~i 334 (354)
++|+.++ ++++.+.+++.|+.+++
T Consensus 150 ~~~~~~~~~~e~~~l~~~~~~~~~~g~~~~i 180 (182)
T 3can_A 150 NPKGYKMQTPSEEVQQQCIQILTDYGLKATI 180 (182)
T ss_dssp -----CCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCceEe
Confidence 4778888 99999999999999887
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.79 E-value=3.1e-19 Score=172.21 Aligned_cols=179 Identities=19% Similarity=0.233 Sum_probs=135.2
Q ss_pred ceeEEeccccceEeeeeecCCCC--------cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcc
Q psy9577 99 NTLCISTQVGCAINCIFCSTGRQ--------GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP 170 (354)
Q Consensus 99 ~tlcvSsq~GC~~~C~fC~tg~~--------g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEP 170 (354)
..++++.+.+||++|.||+.... ...+.++.+|+.+.+..... . .+..|+|+| |||
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~----~-----------g~~~i~~tG-GEP 77 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAE----L-----------GVKKIRITG-GEP 77 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHH----T-----------TCCEEEEES-SCG
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHH----C-----------CCCEEEEeC-CCc
Confidence 46788999999999999988641 12356888888776654322 1 245799999 999
Q ss_pred ccccccccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHH
Q psy9577 171 LLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL 248 (354)
Q Consensus 171 lln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~ 248 (354)
|++. .+.++++.+++..++ ..++++|||... .++.|.+.....+.|||++.+++.++++.+. ..+++++++
T Consensus 78 ll~~-~l~~li~~~~~~~~~----~~i~i~TNG~ll~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~--~~~~~~v~~ 150 (340)
T 1tv8_A 78 LMRR-DLDVLIAKLNQIDGI----EDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR--NIKATTILE 150 (340)
T ss_dssp GGST-THHHHHHHHTTCTTC----CEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS--CCCHHHHHH
T ss_pred cchh-hHHHHHHHHHhCCCC----CeEEEEeCccchHHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCC--CCCHHHHHH
Confidence 9995 567888888864332 279999999752 2444444433478999999999999998652 227899999
Q ss_pred HHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCC
Q psy9577 249 ACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNS 308 (354)
Q Consensus 249 ~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~ 308 (354)
+++.+.+. +.+|.+++++++|+|+. ++.++++++++ ....+.+++|.|.++.
T Consensus 151 ~i~~l~~~--g~~v~i~~vv~~g~n~~--ei~~~~~~~~~----~g~~~~~i~~~p~~~~ 202 (340)
T 1tv8_A 151 QIDYATSI--GLNVKVNVVIQKGINDD--QIIPMLEYFKD----KHIEIRFIEFMDVGND 202 (340)
T ss_dssp HHHHHHHT--TCEEEEEEEECTTTTGG--GHHHHHHHHHH----TTCCEEEEECCCBCSS
T ss_pred HHHHHHHC--CCCEEEEEEEeCCCCHH--HHHHHHHHHHh----cCCeEEEEEeeEcCCC
Confidence 99988754 35899999999999985 79999999998 4455777888887653
No 7
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.76 E-value=1.3e-19 Score=175.87 Aligned_cols=245 Identities=15% Similarity=0.105 Sum_probs=165.3
Q ss_pred chhhhhhH-HHHHHhhhceeeeecCcccccccccC-CceeEEEecC--------CceeEEEeeecCCCceeEEeccccce
Q psy9577 41 FNKMTDLS-MSLRKKLKNSVYIKAPHIMSDQISFD-GTRKWIFHVK--------KNIIETVFIPEKNRNTLCISTQVGCA 110 (354)
Q Consensus 41 ~~~~~~l~-~~~r~~l~~~~~~~~~~~~~~~~s~d-gt~k~l~~~~--------g~~iE~v~i~~~~r~tlcvSsq~GC~ 110 (354)
|++|+|++ +++++++.+...+...+...-..+.| .+.+.|+++. |+.|.. ..-|+.+.||+
T Consensus 2 ~~~m~~~~~~~i~~k~~~~~~l~~~e~~~l~~~~~~~~~~~L~~~A~~~r~~~~g~~v~~---------~~~i~~t~~C~ 72 (350)
T 3t7v_A 2 IQKMALDEFDSLGDKVIEGYQLTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFL---------NCFIYFSTYCK 72 (350)
T ss_dssp ----------CHHHHHHTTCCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHTTEEEE---------EEEEEEECCCC
T ss_pred hhhHhHHHHHHHHHHHHcCCCCCHHHHHHHhcCCChhHHHHHHHHHHHHHHHHCCCEEEE---------EEeeecCCCcC
Confidence 78999999 88888888776666555544444443 4666666554 444321 11255668999
Q ss_pred EeeeeecCCCCc-c-cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-cccc--cccccceeeeee
Q psy9577 111 INCIFCSTGRQG-F-VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLN--YKSTIGALKLIL 185 (354)
Q Consensus 111 ~~C~fC~tg~~g-~-~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Plln--~~~v~~~l~~l~ 185 (354)
++|.||+..... . ...++++||++++..... ..++.|+|.| || |+.+ ++.+.++++.++
T Consensus 73 ~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~---------------~G~~~i~l~g-Ge~p~~~~~~~~~~~l~~~ik 136 (350)
T 3t7v_A 73 NQCSFCYYNCRNEINRYRLTMEEIKETCKTLKG---------------AGFHMVDLTM-GEDPYYYEDPNRFVELVQIVK 136 (350)
T ss_dssp CCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTT---------------SCCSEEEEEE-CCCHHHHHSTHHHHHHHHHHH
T ss_pred CCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHH---------------CCCCEEEEee-CCCCccccCHHHHHHHHHHHH
Confidence 999999865332 2 224899999999875432 1356789988 88 9875 788999999998
Q ss_pred ccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceee
Q psy9577 186 SDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMIT 263 (354)
Q Consensus 186 ~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ 263 (354)
+..++ +++++ .|... .+++|.+.....+.+++++.+++.|+++.| +.+.++.+++++...+. +. .
T Consensus 137 ~~~~i-----~i~~s-~g~~~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~---~~~~~~~l~~i~~a~~~--Gi--~ 203 (350)
T 3t7v_A 137 EELGL-----PIMIS-PGLMDNATLLKAREKGANFLALYQETYDTELYRKLRV---GQSFDGRVNARRFAKQQ--GY--C 203 (350)
T ss_dssp HHHCS-----CEEEE-CSSCCHHHHHHHHHTTEEEEECCCBCSCHHHHHHHST---TCCHHHHHHHHHHHHHH--TC--E
T ss_pred hhcCc-----eEEEe-CCCCCHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCC---CCCHHHHHHHHHHHHHc--CC--e
Confidence 65565 56664 45443 366666655445778999999999999976 46889999999876543 33 4
Q ss_pred eeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHh
Q psy9577 264 FEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILM 326 (354)
Q Consensus 264 ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~ 326 (354)
+...+|-|++++.+++.+.++++++++ +..+.+.||+|.++.++ .+++.++..+..+.++
T Consensus 204 v~~~~i~Glget~e~~~~~l~~l~~l~---~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~R 266 (350)
T 3t7v_A 204 VEDGILTGVGNDIESTILSLRGMSTND---PDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLR 266 (350)
T ss_dssp EEEEEEESSSCCHHHHHHHHHHHHHTC---CSEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHH
T ss_pred EccceEeecCCCHHHHHHHHHHHHhCC---CCEEEecceeeCCCCcCccCCCCChHHHHHHHHHHH
Confidence 666888899999999999999999843 34588999999887654 3455566555554443
No 8
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.76 E-value=3.6e-18 Score=169.94 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=138.8
Q ss_pred CceeEEeccccceEeeeeecCCCCcc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccc
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQGF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK 175 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~ 175 (354)
..+++++.+.+||++|.||....... .+.++.+|+.+.+...... ..+..|+|+| ||||++.+
T Consensus 114 p~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~--------------~gi~~V~ltG-GEPll~~d 178 (416)
T 2a5h_A 114 PDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNT--------------PQVRDVLLSG-GDALLVSD 178 (416)
T ss_dssp SSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTC--------------TTCCEEEEEE-SCTTSSCH
T ss_pred CCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhc--------------CCCcEEEEEC-CCCCCCCH
Confidence 45677788899999999999875322 2568888887666433221 1366799999 99999866
Q ss_pred -cccceeeeeeccccccccceeEEeecccc-h-h-----c-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHH
Q psy9577 176 -STIGALKLILSDHAYGLSRRHVILSTSGI-I-P-----M-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKEL 246 (354)
Q Consensus 176 -~v~~~l~~l~~~~g~~~~~r~itvsT~G~-~-p-----~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~i 246 (354)
.+.++++.+++..++ ++++++|||. . | . ++.|.+. ..+.||+|+.++ ++++ +++
T Consensus 179 ~~L~~il~~l~~~~~v----~~i~i~Tng~~~~p~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei~--------~~v 241 (416)
T 2a5h_A 179 ETLEYIIAKLREIPHV----EIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHP---NEIT--------EES 241 (416)
T ss_dssp HHHHHHHHHHHTSTTC----CEEEEECSHHHHCGGGCCHHHHHHHGGG--CSEEEEECCCSG---GGCC--------HHH
T ss_pred HHHHHHHHHHHhcCCc----cEEEEEecccccccccCCHHHHHHHHhc--CcEEEEEecCCH---HHHh--------HHH
Confidence 588888888863343 3799999992 1 2 2 3333333 457899998776 3342 788
Q ss_pred HHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCC-CCCCcccccchhHHHHHHHH
Q psy9577 247 ILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF-PNSNLICSKNSRIKIFAKIL 325 (354)
Q Consensus 247 l~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~-~~~~~~~p~~e~l~~f~~~l 325 (354)
+++++.+.+. +..|.+++++++|+||+++++.+|++++..+ ......+.+.+. .+..+...+.++..++.+.+
T Consensus 242 ~~ai~~L~~a--Gi~v~i~~vll~GvNd~~e~l~~l~~~l~~l----gv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l 315 (416)
T 2a5h_A 242 TRACQLLADA--GVPLGNQSVLLRGVNDCVHVMKELVNKLVKI----RVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGL 315 (416)
T ss_dssp HHHHHHHHHT--TCCEEEEEECCTTTTCSHHHHHHHHHHHHHT----TEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHc--CCEEEEEEEEECCCCCCHHHHHHHHHHHHHc----CCceEEEeecCCCCCcccccCCcccHHHHHHHH
Confidence 9999887754 3689999999999999999999999999884 344445555554 23344344455556666666
Q ss_pred hhC--ce--eEEEecc
Q psy9577 326 MNS--GI--FVTIRKI 337 (354)
Q Consensus 326 ~~~--gi--~v~ir~~ 337 (354)
+.. |+ +..++..
T Consensus 316 ~~~~~G~~~p~~v~~~ 331 (416)
T 2a5h_A 316 RGHTSGYCVPTFVVDA 331 (416)
T ss_dssp BTTBCGGGCCEEEEEE
T ss_pred HHHCCCCCCceEEEEC
Confidence 553 43 4455543
No 9
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.75 E-value=8.7e-19 Score=169.23 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=143.7
Q ss_pred EeccccceEeeeeecCCCCc--cc-ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc-ccccccccc
Q psy9577 103 ISTQVGCAINCIFCSTGRQG--FV-RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE-PLLNYKSTI 178 (354)
Q Consensus 103 vSsq~GC~~~C~fC~tg~~g--~~-r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE-Plln~~~v~ 178 (354)
++++.||+++|.||+..... .. ..++++||++++...... .++.|+|+| || |+++++.+.
T Consensus 57 i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~---------------g~~~i~~~g-Ge~p~~~~~~~~ 120 (348)
T 3iix_A 57 IEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQF---------------GAKTIVLQS-GEDPYXMPDVIS 120 (348)
T ss_dssp EEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHT---------------TCSEEEEEE-SCCGGGTTHHHH
T ss_pred eEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHC---------------CCCEEEEEe-CCCCCccHHHHH
Confidence 56679999999999854322 12 248999999998754321 256789988 99 999989999
Q ss_pred ceeeeeeccccccccceeEEeecccchhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 179 GALKLILSDHAYGLSRRHVILSTSGIIPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 179 ~~l~~l~~~~g~~~~~r~itvsT~G~~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
++++.+++. ++ ++++++..+.+. +++|.+.....+.+++++.+++.|+++.|. .++++++++++.+.+.
T Consensus 121 ~li~~i~~~-~~-----~i~~s~g~l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~---~~~~~~~~~i~~~~~~- 190 (348)
T 3iix_A 121 DIVKEIKKM-GV-----AVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPD---TSFENRLNCLLTLKEL- 190 (348)
T ss_dssp HHHHHHHTT-SC-----EEEEECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTT---SCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhc-Cc-----eEEEecCCCCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCC---cCHHHHHHHHHHHHHh-
Confidence 999999974 65 777654444443 555666554568899999999999999874 3889999999876543
Q ss_pred CCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHh
Q psy9577 258 PRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILM 326 (354)
Q Consensus 258 ~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~ 326 (354)
+ +.+.+.++.|+ +++.+++.++++++++++ ...+.+.||+|.++.++ .+++.++..++.+.++
T Consensus 191 -G--i~v~~~~i~G~p~et~e~~~~~~~~l~~l~---~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R 257 (348)
T 3iix_A 191 -G--YETGAGSMVGLPGQTIDDLVDDLLFLKEHD---FDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTR 257 (348)
T ss_dssp -T--CEEEECBEESCTTCCHHHHHHHHHHHHHHT---CSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHH
T ss_pred -C--CeeccceEEeCCCCCHHHHHHHHHHHHhcC---CCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 3 46788899999 899999999999999843 35688899999887664 3455566655555544
No 10
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.56 E-value=7e-15 Score=143.56 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=140.2
Q ss_pred Ee-ccccceEeeeeecCCCC---cc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccC-ccc-ccc
Q psy9577 103 IS-TQVGCAINCIFCSTGRQ---GF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMG-EPL-LNY 174 (354)
Q Consensus 103 vS-sq~GC~~~C~fC~tg~~---g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmG-EPl-ln~ 174 (354)
++ .+.||+.+|.||+.... +. .+.++++||++++...... .++.|.|.|.| ||. .++
T Consensus 69 i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---------------g~~~i~~~gg~~~p~~~~~ 133 (369)
T 1r30_A 69 LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAA---------------GSTRFCMGAAWKNPHERDM 133 (369)
T ss_dssp EEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHT---------------TCSEEEEEECCSSCCTTTH
T ss_pred EEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHc---------------CCcEEEEEeCCCCCCcCCH
Confidence 44 36899999999997642 11 3458999999887654321 24568887754 555 467
Q ss_pred ccccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 175 KSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 175 ~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
+.+.++++.+++ .|+ .+++ |+|... .++.|.+.+...+.++|++ +++.++++.+ ..++++++++++.
T Consensus 134 ~~l~~ll~~ik~-~g~-----~i~~-t~G~l~~e~l~~L~~aGvd~v~i~les-~~e~~~~i~~---~~~~~~~l~~i~~ 202 (369)
T 1r30_A 134 PYLEQMVQGVKA-MGL-----EACM-TLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIIT---TRTYQERLDTLEK 202 (369)
T ss_dssp HHHHHHHHHHHH-TTS-----EEEE-ECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCC---SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCC-----eEEE-ecCCCCHHHHHHHHHCCCCEEeecCcC-CHHHHHHhCC---CCCHHHHHHHHHH
Confidence 889999999987 566 5776 889753 3566666654478999999 9999999875 4678999999998
Q ss_pred hhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc---ccccchhHHHHHHHHhh
Q psy9577 253 YITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL---ICSKNSRIKIFAKILMN 327 (354)
Q Consensus 253 ~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~---~~p~~e~l~~f~~~l~~ 327 (354)
+.+. + +.+...+|.|+|++.+++.+++++++.++. .+..+.+.+|.|.++.++ .+|+.+++.++.+.++.
T Consensus 203 a~~~--G--i~v~~~~I~Gl~et~ed~~~~l~~l~~l~~-~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~ 275 (369)
T 1r30_A 203 VRDA--G--IKVCSGGIVGLGETVKDRAGLLLQLANLPT-PPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARI 275 (369)
T ss_dssp HHHH--H--CEEECCEEECSSCCHHHHHHHHHHHHSSSS-CCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHc--C--CeeeeeeEeeCCCCHHHHHHHHHHHHhhcC-CCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 7543 2 356778999999999999999999998431 134566667777776654 45677777766665543
No 11
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=99.48 E-value=1.7e-13 Score=130.49 Aligned_cols=184 Identities=12% Similarity=0.122 Sum_probs=118.3
Q ss_pred CceeEEeccccceEeeeeecCCCC-cccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc----
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQ-GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL---- 172 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~-g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll---- 172 (354)
+.++++.++.||+.+|.||..+.. |..+..++++|++++...... .+..|+|+| ++++.
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~---------------G~~ei~l~g-~~~~~yG~~ 66 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKE---------------GKKEIILVA-QDTTSYGID 66 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHT---------------TCCEEEEEC-TTGGGTTHH
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHC---------------CCcEEEEEe-EcccccCCC
Confidence 568899999999999999998653 335778999999998754321 134577766 33332
Q ss_pred --ccccccceeeeeeccccccccceeEEee-ccc--chhc-hHhhhhcC--cceeEEeeccCcccccccceeCCCcCchH
Q psy9577 173 --NYKSTIGALKLILSDHAYGLSRRHVILS-TSG--IIPM-IDKLAQEC--PVELAVSLHASNNNLRNKLVPISKKYPLK 244 (354)
Q Consensus 173 --n~~~v~~~l~~l~~~~g~~~~~r~itvs-T~G--~~p~-i~~l~~~~--~~~LaiSL~a~~~e~r~~l~p~~~~~~l~ 244 (354)
+.+.+.++++.+++..|+ ..+.++ |++ +.+. ++.+.+.. -..+.+++.+.+++.++++ ++.++.+
T Consensus 67 ~~~~~~l~~Ll~~l~~~~gi----~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m---~r~~t~e 139 (304)
T 2qgq_A 67 LYRKQALPDLLRRLNSLNGE----FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLM---GRTKSSE 139 (304)
T ss_dssp HHSSCCHHHHHHHHHTSSSS----CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHT---TCCSCHH
T ss_pred CCcHHHHHHHHHHHHhcCCC----cEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHh---CCCCCHH
Confidence 235677778777763354 245553 454 2233 44455443 2468899999999999885 5678899
Q ss_pred HHHHHHhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC
Q psy9577 245 ELILACHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN 309 (354)
Q Consensus 245 ~il~~l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~ 309 (354)
+++++++.+.+.. ..+.+.+.+|-|+ +++++++.++.+++++++ ...+++.||.|.++.+
T Consensus 140 ~~~~~i~~l~~~~--~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~---~~~v~~~~~~p~pgT~ 200 (304)
T 2qgq_A 140 ELKKMLSSIRERF--PDAVLRTSIIVGFPGETEEDFEELKQFVEEIQ---FDKLGAFVYSDEEGTV 200 (304)
T ss_dssp HHHHHHHHHHHHC--TTCEEEEEEEECCTTCCHHHHHHHHHHHHHHC---CSEEEEEECCC-----
T ss_pred HHHHHHHHHHhhC--CCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcC---CCEEEEEEeeCCCCCh
Confidence 9999998876542 3477788888887 899999999999999843 3568889999988764
No 12
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.10 E-value=2.3e-10 Score=114.77 Aligned_cols=212 Identities=11% Similarity=0.142 Sum_probs=138.3
Q ss_pred CceeEEeccccceEeeeeecCCCCc-cc---ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcccc-
Q psy9577 98 RNTLCISTQVGCAINCIFCSTGRQG-FV---RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLL- 172 (354)
Q Consensus 98 r~tlcvSsq~GC~~~C~fC~tg~~g-~~---r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPll- 172 (354)
..++.|... +|+.+|.||...... .. +.-.++.|++|+......+. ...+..|.|.| |+|++
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~-----------~~~i~~i~fgG-Gtpt~l 118 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFA-----------GRHVSQLHWGG-GTPTYL 118 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGT-----------TCCEEEEEEEE-SCGGGS
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcC-----------CCceEEEEEeC-CCcccC
Confidence 356666663 699999999876432 11 12346778888765444332 12477788877 99985
Q ss_pred ccccccceeeeeeccccccccceeEEeecccc--hhc-hHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHH
Q psy9577 173 NYKSTIGALKLILSDHAYGLSRRHVILSTSGI--IPM-IDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILA 249 (354)
Q Consensus 173 n~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~--~p~-i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~ 249 (354)
+.+.+.++++.+++..++. ....++++|+.- .+. ++.|.+.....|.+++.+.+++..+.+ ++.++.++++++
T Consensus 119 ~~~~l~~ll~~i~~~~~~~-~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i---~R~~~~~~~~~a 194 (457)
T 1olt_A 119 NKAQISRLMKLLRENFQFN-ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLV---NREQDEEFIFAL 194 (457)
T ss_dssp CHHHHHHHHHHHHHHSCEE-EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHH---TCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHh---CCCCCHHHHHHH
Confidence 6677888887776522210 113688999863 232 444555444578899999999999886 467889999999
Q ss_pred HhhhhccCCCceeeeeeeeccCC-CCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCC--------cccccchh---
Q psy9577 250 CHRYITYSPRHMITFEYCMLHGI-NDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSN--------LICSKNSR--- 317 (354)
Q Consensus 250 l~~~~~~~~~~~v~ieyvlI~Gv-NDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~--------~~~p~~e~--- 317 (354)
++.+.+. +.. .+..-+|-|+ +++.+++.+.++++..++ +.++.+-+|.+.++.. +..|+.++
T Consensus 195 i~~~r~~--G~~-~v~~dlI~GlPget~e~~~~tl~~~~~l~---~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~ 268 (457)
T 1olt_A 195 LNHAREI--GFT-STNIDLIYGLPKQTPESFAFTLKRVAELN---PDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLD 268 (457)
T ss_dssp HHHHHHT--TCC-SCEEEEEESCTTCCHHHHHHHHHHHHHHC---CSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHc--CCC-cEEEEEEcCCCCCCHHHHHHHHHHHHhcC---cCEEEeecCcCCcCchhHhhccccCCCcCHHHHHH
Confidence 9877643 223 1444455554 677899999999998843 3567777777665532 22345433
Q ss_pred -HHHHHHHHhhCceeE
Q psy9577 318 -IKIFAKILMNSGIFV 332 (354)
Q Consensus 318 -l~~f~~~l~~~gi~v 332 (354)
+..+.+.|.++|+..
T Consensus 269 ~~~~~~~~L~~~Gy~~ 284 (457)
T 1olt_A 269 ILQETIAFLTQSGYQF 284 (457)
T ss_dssp HHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHCCCeE
Confidence 445567778888754
No 13
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.83 E-value=1.5e-05 Score=77.54 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=96.7
Q ss_pred EeccccceEeeeeecCCC-Ccccc----cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccc--
Q psy9577 103 ISTQVGCAINCIFCSTGR-QGFVR----NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYK-- 175 (354)
Q Consensus 103 vSsq~GC~~~C~fC~tg~-~g~~r----~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~-- 175 (354)
++.-.||.++|.||.... .+... ....+|+++++.+. +... +..+..|.+.++.+|+ ..+
T Consensus 111 ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~---l~~~---------~~~~~~i~~g~~TDpy-p~E~~ 177 (368)
T 4fhd_A 111 IPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKY---INER---------APEITRFEAACTSDIV-GIDHL 177 (368)
T ss_dssp CCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHH---HHHH---------TTSCEEEESCSSBCHH-HHHTT
T ss_pred eCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHH---Hhhc---------CCCceEEEEEcCCCcc-hhhHH
Confidence 455589999999998532 12211 23468888885432 2221 1233446666677886 334
Q ss_pred --cccceeeeeeccccccccceeEEeecccc-hhchHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 176 --STIGALKLILSDHAYGLSRRHVILSTSGI-IPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 176 --~v~~~l~~l~~~~g~~~~~r~itvsT~G~-~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
.+.++|+.+.+..+. .++|.|=+. +..+..+.....+.+++||.+ ++..+++-| +.-++++=+++++.
T Consensus 178 ~~ltr~~le~l~~~~~~-----~v~i~TKs~lid~L~~l~~~~~v~V~~Sitt--~~l~r~~EP--~aps~~~RL~Ai~~ 248 (368)
T 4fhd_A 178 THSLKKAIEFIGATDYG-----RLRFVTKYEHVDHLLDARHNGKTRFRFSINS--RYVINHFEP--GTSSFDGRLAAARK 248 (368)
T ss_dssp TCHHHHHHHHHHHCSSE-----EEEEEESCCCCGGGTTCCCTTCEEEEEEECC--HHHHHHHCT--TSCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCCc-----eEEEEeCCcCHHHHHhcCcCCceEEEEEEcC--HHHHHHcCC--CCCCHHHHHHHHHH
Confidence 455666777653232 688888543 222333322235667888864 677878776 33467788899998
Q ss_pred hhccCCCceeeee-eeeccCCCCchHHHHHHHHHh
Q psy9577 253 YITYSPRHMITFE-YCMLHGINDTDIHAIELISLM 286 (354)
Q Consensus 253 ~~~~~~~~~v~ie-yvlI~GvNDs~ed~~~La~ll 286 (354)
+.+. |.+|.+. -++||+ +|..++..++.+-+
T Consensus 249 l~~a--Gipv~v~iaPIiP~-~~~~e~y~~lle~l 280 (368)
T 4fhd_A 249 VAGA--GYKLGFVVAPIYRH-EGWERGYFELFQEL 280 (368)
T ss_dssp HHHT--TCEEEEEEEEECCC-TTHHHHHHHHHHHH
T ss_pred HHHC--CCeEEEEEeCcCCC-CCCHHHHHHHHHHH
Confidence 8765 3676665 588999 55566777766633
No 14
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=91.99 E-value=0.0041 Score=61.42 Aligned_cols=142 Identities=9% Similarity=0.057 Sum_probs=87.6
Q ss_pred eeeeccCcccccc--cc-ccceeeeeeccccccccceeEEeecccchhc--hHhhhhcCcceeEEeeccCccccccccee
Q psy9577 162 IVMMGMGEPLLNY--KS-TIGALKLILSDHAYGLSRRHVILSTSGIIPM--IDKLAQECPVELAVSLHASNNNLRNKLVP 236 (354)
Q Consensus 162 Vvf~GmGEPlln~--~~-v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~--i~~l~~~~~~~LaiSL~a~~~e~r~~l~p 236 (354)
|++++ |||+.+. ++ ..+++..|++ .|+ +..++|++..+. ++...+..+ .+ +..+++.+..++.
T Consensus 110 v~~sl-ge~fg~~~g~~~~~kl~~aLk~-lGf-----~~v~dT~~~ad~~~~ee~~e~~~-~~----k~~~~~~~p~~Ts 177 (421)
T 1hfe_L 110 VRYAL-GDAFGMPVGSVTTGKMLAALQK-LGF-----AHCWDTEFTADVTIWEEGSEFVE-RL----TKKSDMPLPQFTS 177 (421)
T ss_dssp GGGTG-GGGGTCCTTCCCHHHHHHHHHH-HTC-----SEECCHHHHHHHHHHHHHHHHHH-HH----TTSSCSCSSEECC
T ss_pred eeehh-HHHhCCCcccccHHHHHHHHHh-hcC-----CccccccccchHHHHHHHHHHHH-HH----hhcCcccCccccc
Confidence 55655 9999875 45 6677777776 687 889999987643 233222222 11 4455666767764
Q ss_pred CC--------CcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCC---
Q psy9577 237 IS--------KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCF--- 305 (354)
Q Consensus 237 ~~--------~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~--- 305 (354)
.- +.++ +.+..+ ... +.+++++.++||+++|+.+++ ... ...+|.++||+.-
T Consensus 178 ~CP~wv~~~e~~~p-----~ll~~l-s~~-~sP~~i~~~lik~~~~~~~~~-------~~~---~i~~V~I~PC~aKK~E 240 (421)
T 1hfe_L 178 CCPGWQKYAETYYP-----ELLPHF-STC-KSPIGMNGALAKTYGAERMKY-------DPK---QVYTVSIMPCIAKKYE 240 (421)
T ss_dssp CCHHHHHHHHHHCG-----GGGGGB-CSB-CCHHHHHHHHHTTHHHHHHTC-------CGG---GEEEEEEESCSHHHHH
T ss_pred CCHHHHHHHHHhhH-----HHHhhc-cCC-CCCceeehhhhchhhhhhcCC-------Chh---hEEEEEEeCCcchHHH
Confidence 21 1222 234333 333 368999999999999986653 220 2367899999862
Q ss_pred -CCCCc-----ccccc-hhHHHHHHHHhhCceeE
Q psy9577 306 -PNSNL-----ICSKN-SRIKIFAKILMNSGIFV 332 (354)
Q Consensus 306 -~~~~~-----~~p~~-e~l~~f~~~l~~~gi~v 332 (354)
.+..| +.++. .+.+++.+.+++.|+..
T Consensus 241 a~r~~~~~~~~~~vD~vlT~~El~~~~~~~gi~~ 274 (421)
T 1hfe_L 241 GLRPELKSSGMRDIDATLTTRELAYMIKKAGIDF 274 (421)
T ss_dssp HTCTTCCTTSSCSCCEEEEHHHHHHHHHHTTCCG
T ss_pred hcCccccccCCCCCCeeeeHHHHHHHHHHcCCCc
Confidence 01122 23333 67788889999888864
No 15
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=72.57 E-value=9 Score=37.60 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=65.4
Q ss_pred CcccccccceeCCC-------cCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeee
Q psy9577 226 SNNNLRNKLVPISK-------KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298 (354)
Q Consensus 226 ~~~e~r~~l~p~~~-------~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vn 298 (354)
.|+.-|.-|.+... +..+++.++-++.|.. . ---|++|. +. -+.++++++++-++. +.-+|
T Consensus 246 ~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-G-AD~if~E~----~~-~~~~ei~~f~~~v~~-----~~P~~ 313 (435)
T 3lg3_A 246 CDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-Y-ADLVWCET----ST-PDLALAKRFADAVHA-----QFPGK 313 (435)
T ss_dssp CCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-G-CSEEEECC----SS-CCHHHHHHHHHHHHH-----HSTTC
T ss_pred cccccchhhcccccccccccccCCHHHHHHHHHHHHc-c-CCEEEecC----CC-CCHHHHHHHHHHhcc-----ccCCe
Confidence 35555555655211 1468888888888875 3 33566553 22 246778888776654 23467
Q ss_pred eeeCCCCCCCCc-ccccchhHHHHHHHHhhCceeEEEec
Q psy9577 299 LIPFNCFPNSNL-ICSKNSRIKIFAKILMNSGIFVTIRK 336 (354)
Q Consensus 299 LIp~n~~~~~~~-~~p~~e~l~~f~~~l~~~gi~v~ir~ 336 (354)
++.||..+.-.| ...+++++..|.+.|.+.|+...+-.
T Consensus 314 ~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~~~ 352 (435)
T 3lg3_A 314 LLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQFIT 352 (435)
T ss_dssp EEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEEET
T ss_pred EEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEEeC
Confidence 788887765444 34677899999999999998876644
No 16
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=68.44 E-value=24 Score=27.13 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred chHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHH
Q psy9577 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIF 321 (354)
Q Consensus 242 ~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f 321 (354)
+.+++.+.+.++.+.. .-+|-.+++ |+.|-+++-.+|.+. +...|-+|-|.. +..++++|
T Consensus 34 spqelkdsieelvkky---nativvvvv----ddkewaekairfvks----lgaqvliiiydq---------dqnrleef 93 (134)
T 2l69_A 34 SPQELKDSIEELVKKY---NATIVVVVV----DDKEWAEKAIRFVKS----LGAQVLIIIYDQ---------DQNRLEEF 93 (134)
T ss_dssp SHHHHHHHHHHHTTCC---CCEEEEEEC----SSHHHHHHHHHHHHH----HCCCCEEEEECS---------CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh---CCeEEEEEE----ccHHHHHHHHHHHHh----cCCeEEEEEEeC---------chhHHHHH
Confidence 4577888888877554 345555544 566778888899999 557777776754 45678889
Q ss_pred HHHHhhCceeEEEec
Q psy9577 322 AKILMNSGIFVTIRK 336 (354)
Q Consensus 322 ~~~l~~~gi~v~ir~ 336 (354)
....+.+|+.|..-.
T Consensus 94 srevrrrgfevrtvt 108 (134)
T 2l69_A 94 SREVRRRGFEVRTVT 108 (134)
T ss_dssp HHHHHHTTCCEEEES
T ss_pred HHHHHhcCceEEEec
Confidence 888888898765443
No 17
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=62.56 E-value=38 Score=31.71 Aligned_cols=165 Identities=10% Similarity=0.005 Sum_probs=89.2
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec--cCccccccccccceeeeeeccccccccceeEEeeccc
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG--MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSG 203 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G--mGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G 203 (354)
.+|++||+++.....+- |..+-+++.=- -|.|...++...+++..+++.-++ -|.+||.|
T Consensus 28 PvTpeEia~~A~~~~~A-------------GAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d~-----iI~~TTgg 89 (314)
T 3lot_A 28 PVTPDQIVEEAVKAAEA-------------GAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSDV-----VINVTTGG 89 (314)
T ss_dssp CCSHHHHHHHHHHHHHH-------------TCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCCC-----EEEECSST
T ss_pred CCCHHHHHHHHHHHHHc-------------CCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCCe-----EEEeCCCC
Confidence 36899999998765431 34555666655 388999887778888888764444 68898876
Q ss_pred chhc----hHhhhh---cCcceeEEeeccCccc----------------------ccccceeCCCcCchHHHHHHHhhhh
Q psy9577 204 IIPM----IDKLAQ---ECPVELAVSLHASNNN----------------------LRNKLVPISKKYPLKELILACHRYI 254 (354)
Q Consensus 204 ~~p~----i~~l~~---~~~~~LaiSL~a~~~e----------------------~r~~l~p~~~~~~l~~il~~l~~~~ 254 (354)
.... -+++.. ..+....+++-++|=- .+..++. | +.+.+-+.++...
T Consensus 90 ~~~~~~~~eeR~~~~~~~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~-N---~~~~i~~~~~~~~ 165 (314)
T 3lot_A 90 GGTLGIPVEERAKVVPALKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFR-N---TFKDLEALSRIFK 165 (314)
T ss_dssp TGGGTCCHHHHTTHHHHHCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEEC-C---CHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHhcCCceeeecCCCcccccccccccccccccccchhhcccCCCceec-C---CHHHHHHHHHHHH
Confidence 4211 123221 1232233444333211 0122222 1 4455555555443
Q ss_pred ccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcc-ccceeeeeeeCCCCCCCCcccccchhHHHHHHHHh
Q psy9577 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI-LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILM 326 (354)
Q Consensus 255 ~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~-~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~ 326 (354)
+. .|..|+-+. +..++..+..|++. |. .-+..++++==.+ ++ .+++++.+..|.+.+.
T Consensus 166 e~----Gi~pE~e~f-----d~g~l~~~~~l~~~-Gll~~p~~~~~VlGv~-~G---~~~~p~~L~~~~~~~~ 224 (314)
T 3lot_A 166 EN----DTKPELECY-----DIGQIYNTAFMFHE-GYLEPPLRLQFIHGIL-GG---IGTAVEDVLFMKQTAD 224 (314)
T ss_dssp HH----TCEEEEEEC-----SHHHHHHHHHHHHT-TCSCSSEEEEEEECCB-TS---CCCCHHHHHHHHHHHH
T ss_pred Hc----CCEEEEEEE-----CHHHHHHHHHHHHC-CCCCCCceEEEEecCC-CC---CCCCHHHHHHHHHHhh
Confidence 32 355555555 56788888887764 20 0235566532111 11 2556677777776553
No 18
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=58.92 E-value=5.5 Score=31.65 Aligned_cols=55 Identities=9% Similarity=0.210 Sum_probs=37.0
Q ss_pred eeeeeeCCCCCCCCc-ccccchhHHHHHHHHhhCce---eEEEeccccc------chhhhhhhccc
Q psy9577 296 KINLIPFNCFPNSNL-ICSKNSRIKIFAKILMNSGI---FVTIRKIRGN------DINAACGQLSG 351 (354)
Q Consensus 296 ~vnLIp~n~~~~~~~-~~p~~e~l~~f~~~l~~~gi---~v~ir~~~G~------di~aaCGqL~~ 351 (354)
.|.-||.+.+. .++ +.-+++.++++.+.+++.|+ +++||..+|. ++.+||+.|++
T Consensus 13 ~v~~IPi~~I~-~p~~~~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A 77 (110)
T 1xw3_A 13 AVHNVPLSVLI-RPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAA 77 (110)
T ss_dssp EEEEEEGGGEE-CCSCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHH
T ss_pred eEEEeCHHHcc-CCCCCccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHH
Confidence 34446665544 222 23456889999999999885 6888875443 68889988764
No 19
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=51.17 E-value=88 Score=28.55 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=87.2
Q ss_pred chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-cCccccccccccceeeeeeccc-cccccceeEEeecccc
Q psy9577 127 LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-MGEPLLNYKSTIGALKLILSDH-AYGLSRRHVILSTSGI 204 (354)
Q Consensus 127 lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-mGEPlln~~~v~~~l~~l~~~~-g~~~~~r~itvsT~G~ 204 (354)
+|++||+++.....+- |..+-+++.=- -|.|.+.++...+++..+++.- ++ -|.+||.|.
T Consensus 27 vTpeEia~~A~~~~~A-------------GAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~-----ii~~Ttg~~ 88 (275)
T 3no5_A 27 ITVSEQVESTQAAFEA-------------GATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGM-----ITQVSTGGR 88 (275)
T ss_dssp CSHHHHHHHHHHHHHH-------------TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTC-----EEEECCCCC
T ss_pred CCHHHHHHHHHHHHHc-------------cCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCe-----EEEeCCCCC
Confidence 7999999998765431 23444444432 2889999888888888887643 44 688888774
Q ss_pred hhch-Hh--hhhcCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHH
Q psy9577 205 IPMI-DK--LAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIE 281 (354)
Q Consensus 205 ~p~i-~~--l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~ 281 (354)
.+.. ++ +.+..+....+++-++| ..+.++. | +.+.+-+.++...+ . .|..|+-+. +..++..
T Consensus 89 ~~~~e~R~~~~~~~Pe~aSl~~gs~N--f~~~v~~-N---~~~~~~~~~~~~~e-~---Gi~pE~e~f-----d~g~l~~ 153 (275)
T 3no5_A 89 SGAGNERGAMLSLRPDMASLATGSVN--FPTRVYD-N---PPELVDWLAAEMKT-Y---GIKPEVEAF-----DLSMIFQ 153 (275)
T ss_dssp TTCCGGGGTTGGGCCSEEEEECSCEE--CSSSEEC-C---CHHHHHHHHHHHHH-T---TCEEEEEES-----STHHHHH
T ss_pred CCCHHHHhhHhhcCCCEEEecCcccc--ccccccc-C---CHHHHHHHHHHHHH-c---CCeeEEEEE-----cHHHHHH
Confidence 4322 12 11112333334433333 2222221 1 34454444444432 2 355666665 5568888
Q ss_pred HHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHh
Q psy9577 282 LISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILM 326 (354)
Q Consensus 282 La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~ 326 (354)
+..|++.--..-+..++++- +...-.+++.+.+..+.+.+.
T Consensus 154 ~~~l~~~Gl~~~p~~~~~vl----Gv~~g~~~~~~~l~~~~~~l~ 194 (275)
T 3no5_A 154 AAAMQAAGAIVGPLHIQFVM----GIKNAMPVDREVLEFYVQTLK 194 (275)
T ss_dssp HHHHHHHTSSCSSCEEEEEE----CCTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCeeEEEEe----CCCCCCCCCHHHHHHHHHHHH
Confidence 87777641000134555432 111123456677777777773
No 20
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=50.44 E-value=19 Score=35.38 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=57.4
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-cccchhHH
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-CSKNSRIK 319 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-~p~~e~l~ 319 (354)
..+++.++-++.|.. . ---|++|. |.. +.++++++++-++. +.-+|++.||..+.-.|. .-+++++.
T Consensus 268 ~gldeAI~Ra~AY~~-G-AD~if~E~----~~~-~~eei~~f~~~v~~-----~~P~~~l~~~~sPsfnw~~~~~~~~~~ 335 (439)
T 3i4e_A 268 PGLEQAISRGLAYAP-Y-ADLIWCET----GKP-DLEYAKKFAEAIHK-----QFPGKLLSYNCSPSFNWKKNLDDATIA 335 (439)
T ss_dssp CSHHHHHHHHHHHTT-T-CSEEEECC----SSC-CHHHHHHHHHHHHH-----HSTTCEEEEECCSSSCHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHh-h-CCEEEecC----CCC-CHHHHHHHHHHhcc-----cCCceEEeeCCCCCCcCcccCCHHHHH
Confidence 468888888888875 3 33455543 333 46788888776654 234677888876644432 45678999
Q ss_pred HHHHHHhhCceeEEEec
Q psy9577 320 IFAKILMNSGIFVTIRK 336 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~ 336 (354)
.|.+.|.+.|+...+-.
T Consensus 336 ~f~~eL~~lGv~~v~~~ 352 (439)
T 3i4e_A 336 KFQKELGAMGYKFQFIT 352 (439)
T ss_dssp THHHHHHHHTCCEEEET
T ss_pred HHHHHHHHcCCeEEEeC
Confidence 99999999998766543
No 21
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=48.25 E-value=26 Score=34.29 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=57.2
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcc-cccchhHH
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI-CSKNSRIK 319 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~-~p~~e~l~ 319 (354)
..+++.++-++.|.. . ---|++|.. .-+.++++++++-++. +.-+|++.||..+...|. ..+++++.
T Consensus 263 ~gld~AI~Ra~AY~~-G-AD~If~e~~-----~~~~eei~~f~~~v~~-----~~P~~~L~~~~sPsfnw~~~~~~~~~~ 330 (433)
T 3eol_A 263 NGIEPCIARAIAYAP-Y-CDLIWMETS-----KPDLAQARRFAEAVHK-----AHPGKLLAYNCSPSFNWKKNLDDATIA 330 (433)
T ss_dssp CSHHHHHHHHHHHGG-G-CSEEEECCS-----SCCHHHHHHHHHHHHH-----HSTTCCEEEECCSSSCHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHh-c-CCEEEEeCC-----CCCHHHHHHHHHHhcc-----cCCCcccccCCCCCCcccccCChhHHh
Confidence 458888888888875 3 335665543 2256788888877654 234677878766544443 34678899
Q ss_pred HHHHHHhhCceeEEEec
Q psy9577 320 IFAKILMNSGIFVTIRK 336 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~ 336 (354)
.|.+.|.+.|+...+-.
T Consensus 331 ~f~~eLa~lGv~~v~~~ 347 (433)
T 3eol_A 331 KFQRELGAMGYKFQFIT 347 (433)
T ss_dssp HHHHHHHHHTEEEEEET
T ss_pred HHHHHHHHcCCeEEEeC
Confidence 99999999998776544
No 22
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=42.92 E-value=13 Score=30.01 Aligned_cols=55 Identities=7% Similarity=0.162 Sum_probs=33.8
Q ss_pred eeeeeeCCCCCCCCcccccchhHHHHHHHHhhCce---eEEEeccccc------chhhhhhhcc
Q psy9577 296 KINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGI---FVTIRKIRGN------DINAACGQLS 350 (354)
Q Consensus 296 ~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi---~v~ir~~~G~------di~aaCGqL~ 350 (354)
.|.-||.+.+.....+.-+++.++++.+.+++.|+ +++|+..+|. +..+||+.|.
T Consensus 24 ~i~~IPl~~I~~p~~r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~hRle 87 (121)
T 1yzs_A 24 AVHNVPLSVLIRPLPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYA 87 (121)
T ss_dssp CEEEEEGGGEECCCCCCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHH
T ss_pred eEEEeeHHHeeCCCCCcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecchHHH
Confidence 44556665554322234566778888888887765 5666654433 6777787764
No 23
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=40.78 E-value=1.9e+02 Score=26.73 Aligned_cols=160 Identities=12% Similarity=0.069 Sum_probs=85.3
Q ss_pred chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec--cCccccccccccceeeeeeccccccccceeEEeecccc
Q psy9577 127 LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG--MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGI 204 (354)
Q Consensus 127 lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G--mGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~ 204 (354)
+|++||+++.....+- |..+-+++.=- -|.|...++...+++..+++.-.. -|.+||.|.
T Consensus 29 vTpeEia~~A~~~~~A-------------GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-----iI~~TTgg~ 90 (311)
T 3e02_A 29 ITPEEIVKEGVAAAEA-------------GAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDA-----ILNITTGGG 90 (311)
T ss_dssp CSHHHHHHHHHHHHHH-------------TCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCC-----EEEECSSCS
T ss_pred CCHHHHHHHHHHHHHc-------------CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-----EEEECCCCC
Confidence 7999999998765431 34455666554 388999887888888888763333 577888764
Q ss_pred hh--chHhhh---hcCcceeEEeeccCcc------ccc----------------ccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 205 IP--MIDKLA---QECPVELAVSLHASNN------NLR----------------NKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 205 ~p--~i~~l~---~~~~~~LaiSL~a~~~------e~r----------------~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
.. .-+++. ...+....+++-++|= +.+ ..++. .+.+.+-+.++...+ .
T Consensus 91 ~~~~~eerla~~~~~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~----n~~~~i~~~~~~~~e-~ 165 (311)
T 3e02_A 91 LGMSLDERLAPARAARPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILS----NTFSQIERGMTELGA-S 165 (311)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEEC----CCHHHHHHHHHHHHT-T
T ss_pred CCCCHHHHHHHHHhcCCCeeeecCCCceeccccchhhccccccccchhhcccCCCceec----CCHHHHHHHHHHHHH-c
Confidence 31 112322 2123223344333321 011 11211 133445555554432 2
Q ss_pred CCceeeeeeeeccCCCCchHHHHHHHHHhhcCcc-ccceeeeeeeCCCCCCCCcccccchhHHHHH
Q psy9577 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKI-LTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~-~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~ 322 (354)
.|..|+-+. +..++..+..|++. |. .-+..++++-=.+ ++ .+++.+.+..+.
T Consensus 166 ---Gi~pE~e~f-----d~g~l~~~~~l~~~-Gl~~~p~~~~~vlGv~-~g---~~~~~~~L~~~~ 218 (311)
T 3e02_A 166 ---GTRFEFECY-----DVGHLYNLAHFVDR-KLVEPPFFLQCVFGIL-GG---IGADPENLLHMR 218 (311)
T ss_dssp ---TCEEEEEEC-----SHHHHHHHHHHHHT-TSSCSCEEEEEEECCB-TS---CCSCHHHHHHHH
T ss_pred ---CCeEEEEEE-----cHHHHHHHHHHHHc-CCCCCCeEEEEEecCC-CC---CCCCHHHHHHHH
Confidence 356666665 56787777777764 20 0245566542111 11 355677777776
No 24
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=39.86 E-value=61 Score=24.71 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhhCceeEEEecccc
Q psy9577 274 DTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRG 339 (354)
Q Consensus 274 Ds~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G 339 (354)
+...++.+|.+++++.+ ...-|-=+|.|..+. ..+..+.+.+|.+.|+..+++|..-++|.
T Consensus 35 ~~~~~~~~l~~li~e~~--v~~iVvGlP~~mdGt---~~~~~~~~~~f~~~L~~~~lpV~~~DERl 95 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREG--LGKLVVGLPLRTDLK---ESAQAGKVLPLVEALRARGVEVELWDERF 95 (98)
T ss_dssp CHHHHHHHHHHHHHHHT--CCEEEEECCCCCCSS---SCCCSSTTHHHHHHHHHTTCEEEEECCSC
T ss_pred CcHHHHHHHHHHHHHcC--CCEEEEeeccCCCCC---cCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 34678899999998733 223344468775432 34566788999999977688888877764
No 25
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=38.69 E-value=10 Score=35.23 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=59.3
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccc---cccccccceeeeeeccccccccceeEEe-ec
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPL---LNYKSTIGALKLILSDHAYGLSRRHVIL-ST 201 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPl---ln~~~v~~~l~~l~~~~g~~~~~r~itv-sT 201 (354)
+.|.+|.++++....++..+. |..+..-+.+..|-|. .+++++.+.++.+.+ .|. ..|++ +|
T Consensus 114 ~~s~~e~l~~~~~~v~~ak~~---------G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ga----~~i~l~DT 179 (307)
T 1ydo_A 114 NKSTSESLHILKQVNNDAQKA---------NLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFE-FGI----SELSLGDT 179 (307)
T ss_dssp CSCHHHHHHHHHHHHHHHHHT---------TCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHH-HTC----SCEEEECS
T ss_pred CCCHHHHHHHHHHHHHHHHHC---------CCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh-cCC----CEEEEcCC
Confidence 358899988888777766543 2334322222235454 456888888888876 454 24444 88
Q ss_pred ccch-hc-hHhhhhc----CcceeEEeeccCcccccccceeCCCcCchHHHHHHHh
Q psy9577 202 SGII-PM-IDKLAQE----CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251 (354)
Q Consensus 202 ~G~~-p~-i~~l~~~----~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~ 251 (354)
+|+. |. +.++.+. .+ .+.+++|+-|+ ....+.+.+.+++
T Consensus 180 ~G~~~P~~v~~lv~~l~~~~~-~~~l~~H~Hnd----------~Gla~AN~laAv~ 224 (307)
T 1ydo_A 180 IGAANPAQVETVLEALLARFP-ANQIALHFHDT----------RGTALANMVTALQ 224 (307)
T ss_dssp SCCCCHHHHHHHHHHHHTTSC-GGGEEEECBGG----------GSCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCC-CCeEEEEECCC----------CchHHHHHHHHHH
Confidence 9975 53 4444443 32 35678888774 1234556666665
No 26
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=35.41 E-value=2.7e+02 Score=25.72 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=86.0
Q ss_pred chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec--cCccccccccccceeeeeeccccccccceeEEeecccc
Q psy9577 127 LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG--MGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGI 204 (354)
Q Consensus 127 lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G--mGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~ 204 (354)
+|++||+++.....+- |..+-+++.=- -|.|...++...+++..+++.-.. -|.+||.|.
T Consensus 29 vTpeEia~~A~~~~~A-------------GAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-----iI~~TTgg~ 90 (311)
T 3e49_A 29 VTPDEVAQASIGAAEA-------------GAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA-----VINLTTGGS 90 (311)
T ss_dssp CSHHHHHHHHHHHHHH-------------TCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC-----EEEECSCSC
T ss_pred CCHHHHHHHHHHHHHc-------------CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-----EEEECCCCC
Confidence 7999999998765431 34455666554 388999888888888888763333 577888764
Q ss_pred hh-c-hHhhh---hcCcceeEEeeccCcc------cc----------------cccceeCCCcCchHHHHHHHhhhhccC
Q psy9577 205 IP-M-IDKLA---QECPVELAVSLHASNN------NL----------------RNKLVPISKKYPLKELILACHRYITYS 257 (354)
Q Consensus 205 ~p-~-i~~l~---~~~~~~LaiSL~a~~~------e~----------------r~~l~p~~~~~~l~~il~~l~~~~~~~ 257 (354)
.. . -+++. ...+....+++-++|= +. +..+++ | +.+.+-+.++...+ .
T Consensus 91 ~~~~~eerla~~~~~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~-n---~~~~i~~~~~~~~e-~ 165 (311)
T 3e49_A 91 PHMTVEERLRPATHYMPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFK-N---TFADIEFILKTCGG-N 165 (311)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEEC-C---CHHHHHHHHHHHHT-T
T ss_pred CCCCHHHHHHHHHhcCCCeeeecCCCcccccccchhhccccccccchhhcccCCCceec-C---CHHHHHHHHHHHHH-c
Confidence 31 1 12322 2123223334333220 01 122322 1 34455555554432 2
Q ss_pred CCceeeeeeeeccCCCCchHHHHHHHHHhhcCcc-ccceeeeeeeCCCCCCCCcccccchhHHHHH
Q psy9577 258 PRHMITFEYCMLHGINDTDIHAIELISLMRKNKI-LTSCKINLIPFNCFPNSNLICSKNSRIKIFA 322 (354)
Q Consensus 258 ~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~-~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~ 322 (354)
.|..|+-+. +..++..+..|++. |. .-+..++++-=.+ ++ .+++.+.+..+.
T Consensus 166 ---Gi~pE~e~f-----d~g~l~~~~~l~~~-Gl~~~p~~~~~vlGv~-~g---~~~~~~~L~~~~ 218 (311)
T 3e49_A 166 ---GTRFEFECY-----DTSHLYNLAHFVDR-KLATPPFFVQTVFGLL-GG---IGPHPEDLAHMR 218 (311)
T ss_dssp ---TCEEEEEEC-----SHHHHHHHHHHHHT-TCSCSSEEEEEEESCT-TS---CCCCHHHHHHHH
T ss_pred ---CCeeEEEEE-----CHHHHHHHHHHHHc-CCCCCCeEEEEEecCC-CC---CCCCHHHHHHHH
Confidence 355666655 56787777777764 20 0245566543111 11 356677777776
No 27
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=31.23 E-value=1.6e+02 Score=27.18 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=59.5
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++. .++++.++++.++.+.+ + |+++=+- |-+.+++.++.++++..+ .+..++=+
T Consensus 135 ~~lH~p~~~-----------~~~~e~~~al~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~~~~--~~~~~~Q~ 194 (346)
T 3n6q_A 135 FYSHRVDEN-----------TPMEETASALAHAVQSG---K--ALYVGIS--SYSPERTQKMVELLREWK--IPLLIHQP 194 (346)
T ss_dssp EEECSCCTT-----------SCHHHHHHHHHHHHHTT---S--EEEEEEE--SCCHHHHHHHHHHHHTTT--CCCCEEEC
T ss_pred EEEeCCCCC-----------CCHHHHHHHHHHHHHcC---C--eeEEEeC--CCCHHHHHHHHHHHHHcC--CCeEEEec
Confidence 568888753 25688899999887553 2 2343333 556778888877776533 34456667
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++.. .+.. ..+...++++|+.+....+.|.
T Consensus 195 ~~~l~~~----~~~~---~~l~~~~~~~gi~v~a~spL~~ 227 (346)
T 3n6q_A 195 SYNLLNR----WVDK---SGLLDTLQNNGVGCIAFTPLAQ 227 (346)
T ss_dssp BCBTTBC----HHHH---TTHHHHHHHHTCEEEEBSTTGG
T ss_pred cCchhhc----Ccch---hhHHHHHHHcCCeEEEeccccC
Confidence 8887642 1111 1466777888999988876654
No 28
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=30.55 E-value=1.2e+02 Score=29.69 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=53.5
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCc-ccccchhHH
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNL-ICSKNSRIK 319 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~-~~p~~e~l~ 319 (354)
..+++.++-++.|.. . ---|+++. |. -+.++++++++-++. . ..+|++-||..+...| ..-+++++.
T Consensus 264 ~gld~AI~Ra~AYa~-g-AD~if~e~----~~-~~~eei~~f~~~v~~----~-~P~~~La~n~sPsf~w~~~~~~~~~~ 331 (429)
T 1f8m_A 264 NGIEPCIARAKAYAP-F-ADLIWMET----GT-PDLEAARQFSEAVKA----E-YPDQMLAYNCSPSFNWKKHLDDATIA 331 (429)
T ss_dssp CSHHHHHHHHHHHGG-G-CSEEEECC----SS-CCHHHHHHHHHHHHT----T-CTTCEEEEECCTTSCHHHHCCHHHHH
T ss_pred cCHHHHHHHHHHHHh-c-CCEEEeCC----CC-CCHHHHHHHHHHhcc----c-CCCceeecCCCCCCCcccccchhhHh
Confidence 468888888888865 3 23455443 23 356788888776653 1 1234555665443333 235778999
Q ss_pred HHHHHHhhCceeEEEec
Q psy9577 320 IFAKILMNSGIFVTIRK 336 (354)
Q Consensus 320 ~f~~~l~~~gi~v~ir~ 336 (354)
.|.+.|.+.|+...+-.
T Consensus 332 ~f~~eL~~lG~~~v~~~ 348 (429)
T 1f8m_A 332 KFQKELAAMGFKFQFIT 348 (429)
T ss_dssp HHHHHHHHHTEEEEEET
T ss_pred HHHHHHHHcCCeEEEEC
Confidence 99999999998766543
No 29
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=30.04 E-value=17 Score=34.71 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=64.0
Q ss_pred cceEeeeeecCCCCcc--cccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeee
Q psy9577 108 GCAINCIFCSTGRQGF--VRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLIL 185 (354)
Q Consensus 108 GC~~~C~fC~tg~~g~--~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~ 185 (354)
|...=+.|+++..... .-+.|.+|+++.+.....+..+. | ..|.|..+=+.-.+++++.+.++.+.
T Consensus 100 g~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--------g----~~v~~~~ed~~r~~~~~~~~~~~~~~ 167 (370)
T 3rmj_A 100 PKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--------T----DDVEFSCEDALRSEIDFLAEICGAVI 167 (370)
T ss_dssp SSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--------C----SCEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--------C----CEEEEecCCCCccCHHHHHHHHHHHH
Confidence 4555567777653322 23568899999887766655432 1 13566554345567789999998887
Q ss_pred ccccccccceeEEe-ecccch-hc-hHhhhh----cCcc--eeEEeeccCcc
Q psy9577 186 SDHAYGLSRRHVIL-STSGII-PM-IDKLAQ----ECPV--ELAVSLHASNN 228 (354)
Q Consensus 186 ~~~g~~~~~r~itv-sT~G~~-p~-i~~l~~----~~~~--~LaiSL~a~~~ 228 (354)
+ .|. ..|++ +|+|+. |. +.++.+ ..+. .+.+++|+-|+
T Consensus 168 ~-~Ga----~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd 214 (370)
T 3rmj_A 168 E-AGA----TTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHND 214 (370)
T ss_dssp H-HTC----CEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCT
T ss_pred H-cCC----CEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCC
Confidence 6 454 25555 899975 53 444433 3331 25688888875
No 30
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=29.62 E-value=2.7e+02 Score=25.23 Aligned_cols=85 Identities=11% Similarity=-0.023 Sum_probs=54.1
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++ ++++.++++.++.+.+ + |+++=+- |-+.+++.++.+.. + .+..+|-+
T Consensus 121 ~llH~p~~-------------~~~e~~~al~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~-~----~~p~v~Q~ 175 (298)
T 1vp5_A 121 YLIHQPFG-------------DVHCAWKAMEEMYKDG---L--VRAIGVS--NFYPDRLMDLMVHH-E----IVPAVNQI 175 (298)
T ss_dssp EEECSSCS-------------CHHHHHHHHHHHHHTT---S--EEEEEEE--SCCHHHHHHHHHHC-S----SCCSEEEE
T ss_pred EEecCCCC-------------CHHHHHHHHHHHHHcC---C--ccEEEec--CCCHHHHHHHHHhC-C----CCceEEEE
Confidence 45787764 3578888888887553 2 2333332 44566666666543 2 33456778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++... .++.+..+++|+.+....+.|.
T Consensus 176 ~~~~~~~~----------~~l~~~~~~~gI~v~a~spL~~ 205 (298)
T 1vp5_A 176 EIHPFYQR----------QEEIEFMRNYNIQPEAWGPFAE 205 (298)
T ss_dssp ECBTTBCC----------HHHHHHHHHTTCEEEEESTTGG
T ss_pred ecccccCC----------HHHHHHHHHCCCEEEEeccccc
Confidence 89986421 2467778899999988887654
No 31
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=29.57 E-value=2.3e+02 Score=25.85 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=89.0
Q ss_pred chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec-cCccccccccccceeeeeeccc-cccccceeEEeecccc
Q psy9577 127 LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG-MGEPLLNYKSTIGALKLILSDH-AYGLSRRHVILSTSGI 204 (354)
Q Consensus 127 lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G-mGEPlln~~~v~~~l~~l~~~~-g~~~~~r~itvsT~G~ 204 (354)
+|++||+++.....+- |..+-+++.=- -|.|.+.++...+++..+++.. ++ -|.+||.|.
T Consensus 31 vTpeEia~~A~~~~~A-------------GAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~-----ii~~TTgg~ 92 (284)
T 3chv_A 31 ITVSEQVESTQEAFEA-------------GAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGM-----IVQFSTGGR 92 (284)
T ss_dssp CSHHHHHHHHHHHHHH-------------TCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTC-----EEEECCCTT
T ss_pred CCHHHHHHHHHHHHHc-------------CCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCe-----EEEeCCCCC
Confidence 6999999998765431 23444454432 2889999888888888888642 45 788999664
Q ss_pred hh-chHhhhh--cCcceeEEeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHH
Q psy9577 205 IP-MIDKLAQ--ECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIE 281 (354)
Q Consensus 205 ~p-~i~~l~~--~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~ 281 (354)
.. .-+++.. ..+....+++-+++-. ..++. | +.+.+-+.++...+. .|..|+-+. +..++..
T Consensus 93 ~~~~eeR~~~~~~~Pe~aSl~~Gs~Nf~--~~v~~-n---~~~~~~~~~~~~~e~----Gv~pE~e~f-----d~g~l~~ 157 (284)
T 3chv_A 93 SGAGQARGGMLPLKPDMASLSVGSNNFP--SRVYE-N---PPDLVDWLAAQMRSY----RVTPEIEAF-----DLSHILR 157 (284)
T ss_dssp TCCGGGGGTTGGGCCSEEEECCSCEECS--SSEEC-C---CHHHHHHHHHHHHHH----TCEEEEEES-----SHHHHHH
T ss_pred CCCHHHHHHhhhcCCCEEEecCcccccC--Ccccc-C---CHHHHHHHHHHHHHc----CCEEEEEEE-----CHHHHHH
Confidence 22 1223222 1233333444444311 22221 1 344444444444322 356666665 5678888
Q ss_pred HHHHhhcCcc-ccceeeeeeeCCCCCCCCcccccchhHHHHHHHHh
Q psy9577 282 LISLMRKNKI-LTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILM 326 (354)
Q Consensus 282 La~ll~~~~~-~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~ 326 (354)
+..|++. |. .-+..++++=-.+. + .+++.+.+..+.+.+-
T Consensus 158 ~~~l~~~-Gll~~p~~~~~vlGv~~-g---~~~~~~~L~~~~~~~p 198 (284)
T 3chv_A 158 AIDMHGR-GLLYGKLYVQFVMGVKN-A---MPADREVFDFYVRMMR 198 (284)
T ss_dssp HHHHHHT-TCSCSSCEEEEEECCTT-S---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCCCCceEEEEEecCC-C---CCCCHHHHHHHHHhcc
Confidence 8777764 20 01455555522111 1 3566777777776663
No 32
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=29.45 E-value=3e+02 Score=24.41 Aligned_cols=88 Identities=7% Similarity=-0.061 Sum_probs=55.6
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++. ..++++.++++.++.+.+ +| +++=+- |-+.++++++.+... .+..+|-+
T Consensus 105 ~llH~p~~~----------~~~~~e~~~al~~l~~~G---ki--r~iGvS--n~~~~~l~~~~~~~~-----~~p~~~Q~ 162 (278)
T 1hw6_A 105 YLVHWPTPA----------ADNYVHAWEKMIELRAAG---LT--RSIGVS--NHLVPHLERIVAATG-----VVPAVNQI 162 (278)
T ss_dssp EEECCCCTT----------CSSHHHHHHHHHHHHHTT---SE--EEEEEE--SCCHHHHHHHHHHHS-----CCCSEEEE
T ss_pred EEEcCCCCC----------CCCHHHHHHHHHHHHHcC---Cc--cEEEec--CCCHHHHHHHHHhcC-----CCceeEEE
Confidence 458887653 124678888888887553 22 333232 455667777666542 33456678
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++... .++.+..+++|+.+....+.|.
T Consensus 163 ~~~~~~~~----------~~l~~~~~~~gi~v~a~spl~~ 192 (278)
T 1hw6_A 163 ELHPAYQQ----------REITDWAAAHDVKIESWGPLGQ 192 (278)
T ss_dssp ECBTTBCC----------HHHHHHHHHTTCEEEEESTTGG
T ss_pred EeCcccCC----------HHHHHHHHHcCCEEEEeccccC
Confidence 89986421 2467778899999988876653
No 33
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=29.06 E-value=3.1e+02 Score=25.11 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=57.8
Q ss_pred EeeccCcccccccceeCC---CcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceee
Q psy9577 221 VSLHASNNNLRNKLVPIS---KKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~---~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~v 297 (354)
+-||.+++......+|.. ...++++.++++.++.+.+. | +++=+- |-+.++++++.+... .+..+
T Consensus 127 ~llH~p~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~Gk---i--r~iGvS--n~~~~~l~~~~~~~~-----~~~~~ 194 (331)
T 3h7r_A 127 YLIHWPASLKKESLMPTPEMLTKPDITSTWKAMEALYDSGK---A--RAIGVS--NFSSKKLTDLLNVAR-----VTPAV 194 (331)
T ss_dssp EEECCSCEECTTCSSCCGGGEECCCHHHHHHHHHHHHHTTS---B--SSEEEE--SCCHHHHHHHHHHCS-----SCCSE
T ss_pred EEEecCcccccccccccccccccCCHHHHHHHHHHHHHcCC---C--cEEEec--CCCHHHHHHHHHhcC-----CCcee
Confidence 567887653322112211 02467899999998876532 2 232232 445666666655442 34556
Q ss_pred eeeeCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 298 nLIp~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
|-++||+.... ..+.+..+++|+.+....+.|.
T Consensus 195 ~Q~~~~~~~~~----------~~l~~~~~~~gI~v~a~spL~~ 227 (331)
T 3h7r_A 195 NQVECHPVWQQ----------QGLHELCKSKGVHLSGYSPLGS 227 (331)
T ss_dssp EEEECBTTBCC----------HHHHHHHHHHTCEEEEESTTSC
T ss_pred EEeecccccCC----------HHHHHHHHHCCCEEEEeCCCCC
Confidence 77888875321 3566778888999988876653
No 34
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=28.55 E-value=2.8e+02 Score=25.09 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=56.1
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++.. ++++.++++.++.+.+ + |+++=+- |-+.++++++.+... .+..+|-+
T Consensus 125 ~llH~p~~~~-----------~~~e~~~al~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~-----~~~~~~Q~ 181 (298)
T 3up8_A 125 LLLHWPGSDV-----------PMAERIGALNEVRNAG---K--VRHIGIS--NFNTTQMEEAARLSD-----APIATNQV 181 (298)
T ss_dssp EEESCSCCSS-----------CHHHHHHHHHHHHHTT---S--EEEEEEE--SCCHHHHHHHHHHCS-----SCEEEEEE
T ss_pred EEEccCCCCC-----------CHHHHHHHHHHHHHcC---C--ccEEEEc--CCCHHHHHHHHHhCC-----CCceEEEE
Confidence 4578877532 5678889998887553 2 2333333 445667776666432 34667778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++.. . .++.+..+++|+.+....+.|.
T Consensus 182 ~~~~~~~-------~---~~l~~~~~~~gi~v~a~spL~~ 211 (298)
T 3up8_A 182 EYHPYLD-------Q---TKVLQTARRLGMSLTSYYAMAN 211 (298)
T ss_dssp ECBTTBC-------C---HHHHHHHHHHTCEEEEECTTGG
T ss_pred ecccccc-------c---HHHHHHHHHCCCEEEEECCCcC
Confidence 9998642 1 3466777888999988876653
No 35
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.84 E-value=29 Score=31.96 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=59.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEE-eeeeeccCcc---ccccccccceeeeeeccccccccceeEEe-e
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT-NIVMMGMGEP---LLNYKSTIGALKLILSDHAYGLSRRHVIL-S 200 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~-~Vvf~GmGEP---lln~~~v~~~l~~l~~~~g~~~~~r~itv-s 200 (354)
++|.+|.++.+....++..+. |..+. +|..+. |-| -.+++++.++++.+.+ .|.. .+++ +
T Consensus 116 ~~s~ee~l~~~~~~v~~a~~~---------G~~V~~~l~~~~-~~e~~~~~~~~~~~~~~~~~~~-~G~d----~i~l~D 180 (302)
T 2ftp_A 116 NCSIKDSLERFVPVLEAARQH---------QVRVRGYISCVL-GCPYDGDVDPRQVAWVARELQQ-MGCY----EVSLGD 180 (302)
T ss_dssp SSCHHHHHHHHHHHHHHHHHT---------TCEEEEEEECTT-CBTTTBCCCHHHHHHHHHHHHH-TTCS----EEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHC---------CCeEEEEEEEEe-eCCcCCCCCHHHHHHHHHHHHH-cCCC----EEEEeC
Confidence 368889988888776666543 22332 222222 433 2566888888887776 4542 4444 7
Q ss_pred cccch-hc-hHhhhhcC--cc-eeEEeeccCcccccccceeCCCcCchHHHHHHHhh
Q psy9577 201 TSGII-PM-IDKLAQEC--PV-ELAVSLHASNNNLRNKLVPISKKYPLKELILACHR 252 (354)
Q Consensus 201 T~G~~-p~-i~~l~~~~--~~-~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~ 252 (354)
|.|+. |. +.++.+.+ .+ .+-+++|.-|+ ......+.+.+++.
T Consensus 181 T~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~----------~Gla~An~laAv~a 227 (302)
T 2ftp_A 181 TIGVGTAGATRRLIEAVASEVPRERLAGHFHDT----------YGQALANIYASLLE 227 (302)
T ss_dssp SSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCT----------TSCHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCC----------ccHHHHHHHHHHHh
Confidence 88875 53 34444432 11 35678888663 23456777777753
No 36
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Probab=25.75 E-value=2.8e+02 Score=25.70 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=57.7
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++. .++++.++++.++.+.+ +| +++=+- |-+.+++.++.+..+..+. .+..+|=+
T Consensus 155 ~~lH~pd~~-----------~~~~e~~~al~~l~~~G---ki--r~iGvS--n~~~~~l~~~~~~~~~~~~-~~~~~~Q~ 215 (367)
T 3lut_A 155 VFANRPDPN-----------TPMEETVRAMTHVINQG---MA--MYWGTS--RWSSMEIMEAYSVARQFNL-IPPICEQA 215 (367)
T ss_dssp EEESSCCTT-----------SCHHHHHHHHHHHHHTT---SE--EEEEEE--SCCHHHHHHHHHHHHHHTC-CCCCEEEE
T ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHcC---Ce--eEEEec--CCCHHHHHHHHHHHHHcCC-CCceeeec
Confidence 568888753 25788999999887653 22 333232 5566777777766653221 23456668
Q ss_pred eCCCCCCCCcccccchhHH-HHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIK-IFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~-~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++... ..+ .+....+++|+.+....+.|.
T Consensus 216 ~~~~~~~~--------~~e~~l~~~~~~~gi~v~a~spL~~ 248 (367)
T 3lut_A 216 EYHMFQRE--------KVEVQLPELFHKIGVGAMTWSPLAC 248 (367)
T ss_dssp ECBTTBCH--------HHHTHHHHHHHHHCCEEEEECTTGG
T ss_pred cccceecc--------hhHhHHHHHHHHcCCeEEEeccccc
Confidence 88876321 112 456777888999988876653
No 37
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=25.09 E-value=23 Score=33.18 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=61.4
Q ss_pred cceEeeeeecCCCCccc--ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCccccccccccceeeeee
Q psy9577 108 GCAINCIFCSTGRQGFV--RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLIL 185 (354)
Q Consensus 108 GC~~~C~fC~tg~~g~~--r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEPlln~~~v~~~l~~l~ 185 (354)
|+..=+.|+.+...... -+.|.+|.++.+....++..+. | . .|.|..+=+.-.+++++.+.++.+.
T Consensus 94 g~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--------g-~---~v~f~~~d~~~~~~~~~~~~~~~~~ 161 (325)
T 3eeg_A 94 KRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--------V-H---EVEFFCEDAGRADQAFLARMVEAVI 161 (325)
T ss_dssp SSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTT--------S-S---EEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--------C-C---EEEEEccccccchHHHHHHHHHHHH
Confidence 44545566665432222 2467889988887766665542 2 1 2566443344567788999998887
Q ss_pred ccccccccceeEEe-ecccch-hc-hHhhhh----cCcc--eeEEeeccCcc
Q psy9577 186 SDHAYGLSRRHVIL-STSGII-PM-IDKLAQ----ECPV--ELAVSLHASNN 228 (354)
Q Consensus 186 ~~~g~~~~~r~itv-sT~G~~-p~-i~~l~~----~~~~--~LaiSL~a~~~ 228 (354)
+ .|. ..|++ +|+|+. |. +.++.+ ..+. .+.+++|+-|+
T Consensus 162 ~-~G~----~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd 208 (325)
T 3eeg_A 162 E-AGA----DVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHND 208 (325)
T ss_dssp H-HTC----SEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCT
T ss_pred h-cCC----CEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCC
Confidence 6 454 25555 899975 43 444433 3331 25688888774
No 38
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=24.65 E-value=1.8e+02 Score=26.86 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=59.2
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.++++ .++++.++++.++.+.+ + |+++=+- |-+.++++++.+.++..+ .+..++=+
T Consensus 156 ~~lH~p~~~-----------~~~~e~~~aL~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~~~~--~~~~~~Q~ 215 (353)
T 3erp_A 156 FYHHRPDPE-----------TPLKETMKALDHLVRHG---K--ALYVGIS--NYPADLARQAIDILEDLG--TPCLIHQP 215 (353)
T ss_dssp EEECSCCTT-----------SCHHHHHHHHHHHHHTT---S--EEEEEEE--SCCHHHHHHHHHHHHHHT--CCEEEEEC
T ss_pred EEecCCCCC-----------CCHHHHHHHHHHHHHCC---C--ccEEEec--CCCHHHHHHHHHHHHHcC--CCeEEeec
Confidence 467888753 25688899999887653 2 2333333 456778888877776422 34566778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++... +. ..+...++++|+.+....+.|.
T Consensus 216 ~~~~~~~~----~e----~~ll~~~~~~gI~v~a~spL~~ 247 (353)
T 3erp_A 216 KYSLFERW----VE----DGLLALLQEKGVGSIAFSPLAG 247 (353)
T ss_dssp BCBTTBCG----GG----GTHHHHHHHHTCEEEEBSTTGG
T ss_pred cccccccc----hh----hHHHHHHHHcCCeEEEeccccc
Confidence 89986421 11 2356777888999988776543
No 39
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=24.25 E-value=1.5e+02 Score=27.60 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=41.3
Q ss_pred chhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeec--cCccccccccccceeeeeecc-ccccccceeEEeecc
Q psy9577 127 LTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMG--MGEPLLNYKSTIGALKLILSD-HAYGLSRRHVILSTS 202 (354)
Q Consensus 127 lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~G--mGEPlln~~~v~~~l~~l~~~-~g~~~~~r~itvsT~ 202 (354)
+|++||+++.....+- |..+-++..=- -|.|...++...+++..+++. -++ -|.+||.
T Consensus 45 vTpeEIa~~A~~a~~A-------------GAaivHlHvRd~~~G~ps~d~~~y~e~~~~IR~~~~d~-----ii~~TTg 105 (316)
T 3c6c_A 45 ITPAQIADACVEAAKA-------------GASVAHIHVRDPKTGGGSRDPVLFKEVVDRVRSSGTDI-----VLNLTCG 105 (316)
T ss_dssp CSHHHHHHHHHHHHHH-------------TCSEEEECEECTTTCCEECCHHHHHHHHHHHHTTTCCC-----EEEEECC
T ss_pred CCHHHHHHHHHHHHHc-------------CCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHCCCe-----EEEeCCC
Confidence 6999999998765431 23454555443 388999988888888888864 245 6889996
No 40
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=24.06 E-value=1.8e+02 Score=26.80 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=37.5
Q ss_pred chHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCC
Q psy9577 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNC 304 (354)
Q Consensus 242 ~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~ 304 (354)
.+++.++-++.|.+.. .. .++++|+.+ +++++++++.+.+ .|.-+|++++..
T Consensus 168 gldeAi~Ra~ay~eAG--AD----~ifi~g~~~-~~ei~~~~~~~~~----~Pl~~n~~~~g~ 219 (302)
T 3fa4_A 168 GYEESVARLRAARDAG--AD----VGFLEGITS-REMARQVIQDLAG----WPLLLNMVEHGA 219 (302)
T ss_dssp CHHHHHHHHHHHHTTT--CS----EEEETTCCC-HHHHHHHHHHTTT----SCEEEECCTTSS
T ss_pred CHHHHHHHHHHHHHcC--CC----EEeecCCCC-HHHHHHHHHHhcC----CceeEEEecCCC
Confidence 5788888888888654 33 335788865 6788888888765 566778777643
No 41
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=23.70 E-value=4e+02 Score=23.95 Aligned_cols=88 Identities=11% Similarity=-0.073 Sum_probs=55.3
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++. ..++++.++++.++.+.+ + |+++=+- |-+.++++++.+... ....+|-+
T Consensus 125 ~llH~p~~~----------~~~~~e~~~al~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~-----~~p~v~Q~ 182 (296)
T 1mzr_A 125 YLMHWPVPA----------IDHYVEAWKGMIELQKEG---L--IKSIGVC--NFQIHHLQRLIDETG-----VTPVINQI 182 (296)
T ss_dssp EEESCCCTT----------TCCHHHHHHHHHHHHHTT---S--EEEEEEE--SCCHHHHHHHHHHHS-----CCCSEEEE
T ss_pred EEEccCCCC----------cCCHHHHHHHHHHHHHCC---C--cCEEEEe--CCCHHHHHHHHHhcC-----CCceEEee
Confidence 457887653 124678889998887553 2 2333333 445667777666442 23347778
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||+.... .++.+..+++|+.+....+.|.
T Consensus 183 ~~~~~~~~----------~~l~~~~~~~gI~v~a~spL~~ 212 (296)
T 1mzr_A 183 ELHPLMQQ----------RQLHAWNATHKIQTESWSPLAQ 212 (296)
T ss_dssp ECBTTBCC----------HHHHHHHHHTTCEEEEESTTTT
T ss_pred ecccccCC----------HHHHHHHHHCCCeEEEeccccC
Confidence 89886421 2466778889999988876653
No 42
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=22.99 E-value=2.9e+02 Score=24.72 Aligned_cols=141 Identities=13% Similarity=-0.026 Sum_probs=63.7
Q ss_pred ccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCc--cccccccccceeeeeeccccccccceeEEeecc
Q psy9577 125 RNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGE--PLLNYKSTIGALKLILSDHAYGLSRRHVILSTS 202 (354)
Q Consensus 125 r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGE--Plln~~~v~~~l~~l~~~~g~~~~~r~itvsT~ 202 (354)
..++.++.++-+....+ . |-..| .+++.+.++ |.+. ...++++.+.+..+. ++++-+
T Consensus 21 ~~~~~e~k~~i~~~L~~-~-----------Gv~~I-E~g~~~~~~~~p~~~--~~~e~~~~i~~~~~~-----~v~~l~- 79 (295)
T 1ydn_A 21 RFVPTADKIALINRLSD-C-----------GYARI-EATSFVSPKWVPQLA--DSREVMAGIRRADGV-----RYSVLV- 79 (295)
T ss_dssp SCCCHHHHHHHHHHHTT-T-----------TCSEE-EEEECSCTTTCGGGT--THHHHHHHSCCCSSS-----EEEEEC-
T ss_pred CCcCHHHHHHHHHHHHH-c-----------CcCEE-EEccCcCcccccccc--CHHHHHHHHHhCCCC-----EEEEEe-
Confidence 44788887766654322 1 11122 222323355 5432 333555555542243 443322
Q ss_pred cchhchHhhhhcCcceeEEeeccCcccccccc-eeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccC----CCCchH
Q psy9577 203 GIIPMIDKLAQECPVELAVSLHASNNNLRNKL-VPISKKYPLKELILACHRYITYSPRHMITFEYCMLHG----INDTDI 277 (354)
Q Consensus 203 G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l-~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~G----vNDs~e 277 (354)
.....+++..+.....+.+++.+.+ .|.+. +..+....++.+.+.++... .. +..|..+....-| .-.+++
T Consensus 80 ~n~~~i~~a~~~G~~~V~i~~~~S~--~h~~~~~~~~~~e~~~~~~~~v~~a~-~~-G~~V~~~l~~~~~~e~~~~~~~~ 155 (295)
T 1ydn_A 80 PNMKGYEAAAAAHADEIAVFISASE--GFSKANINCTIAESIERLSPVIGAAI-ND-GLAIRGYVSCVVECPYDGPVTPQ 155 (295)
T ss_dssp SSHHHHHHHHHTTCSEEEEEEESCH--HHHHHHTSSCHHHHHHHHHHHHHHHH-HT-TCEEEEEEECSSEETTTEECCHH
T ss_pred CCHHHHHHHHHCCCCEEEEEEecCH--HHHHHHcCCCHHHHHHHHHHHHHHHH-Hc-CCeEEEEEEEEecCCcCCCCCHH
Confidence 1123455555554335666665543 33332 01111223444445555433 33 3566533333311 123467
Q ss_pred HHHHHHHHhhcCc
Q psy9577 278 HAIELISLMRKNK 290 (354)
Q Consensus 278 d~~~La~ll~~~~ 290 (354)
.+.++++.+.+.|
T Consensus 156 ~~~~~~~~~~~~G 168 (295)
T 1ydn_A 156 AVASVTEQLFSLG 168 (295)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC
Confidence 7888888777743
No 43
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=22.84 E-value=3.3e+02 Score=22.59 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=48.4
Q ss_pred chHHHHHHHhhhhc------cCCCceeeeeeeeccCCCCch---HHHHHHHHHhhcCccccceeeeeeeCCCCCCCCccc
Q psy9577 242 PLKELILACHRYIT------YSPRHMITFEYCMLHGINDTD---IHAIELISLMRKNKILTSCKINLIPFNCFPNSNLIC 312 (354)
Q Consensus 242 ~l~~il~~l~~~~~------~~~~~~v~ieyvlI~GvNDs~---ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~ 312 (354)
.++++.+.+.+... .++...|.=|.+|++= +-+. .++.++++.++. +| +-..+-.-.---.
T Consensus 57 ~leqI~kqL~Kl~dV~~V~r~~~~~~v~rEl~liKv-~~~~~~r~~i~~~~~~fra-------~i--vdv~~~~~~ie~t 126 (164)
T 2f1f_A 57 VLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKI-QASGYGRDEVKRNTEIFRG-------QI--IDVTPSLYTVQLA 126 (164)
T ss_dssp HHHHHHHHHHHSTTEEEEEEGGGSCEEEEEEEEEEE-ECCTHHHHHHHHHHHHTTC-------EE--EEECSSEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEEcCCcccceeEEEEEEE-ECCcccHHHHHHHHHHcCC-------EE--EEECCCEEEEEEe
Confidence 46777777766542 1222356667777763 3333 456666665554 21 2222210000023
Q ss_pred ccchhHHHHHHHHhhCc-eeEEEec
Q psy9577 313 SKNSRIKIFAKILMNSG-IFVTIRK 336 (354)
Q Consensus 313 p~~e~l~~f~~~l~~~g-i~v~ir~ 336 (354)
-+++++++|.+.|+.+| +.=.+|.
T Consensus 127 g~~~ki~~~~~~l~~~g~i~e~~Rt 151 (164)
T 2f1f_A 127 GTSGKLDAFLASIRDVAKIVEVARS 151 (164)
T ss_dssp ECHHHHHHHHHHHTTTSEEEEEEEC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEECc
Confidence 46788999999999999 8777775
No 44
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=22.78 E-value=4.2e+02 Score=23.85 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=57.4
Q ss_pred EeeccCcccccccceeCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeee
Q psy9577 221 VSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI 300 (354)
Q Consensus 221 iSL~a~~~e~r~~l~p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLI 300 (354)
+-||.+++. .++++.++++.++.+.+ + |+++=+- |-+.+++.++.+..+..+. .+..++=+
T Consensus 121 ~~lH~p~~~-----------~~~~e~~~al~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~~~~~-~~~~~~Q~ 181 (327)
T 3eau_A 121 VFANRPDPN-----------TPMEETVRAMTHVINQG---M--AMYWGTS--RWSSMEIMEAYSVARQFNL-IPPICEQA 181 (327)
T ss_dssp EEESSCCTT-----------SCHHHHHHHHHHHHHTT---S--EEEEEEE--SCCHHHHHHHHHHHHHTTC-CCCCEEEE
T ss_pred EEEeCCCCC-----------CCHHHHHHHHHHHHHcC---C--eeEEeec--CCCHHHHHHHHHHHHHcCC-CCceeecc
Confidence 457888753 25788999999887653 2 2333232 5567788877776654221 23455667
Q ss_pred eCCCCCCCCcccccchhHHHHHHHHhhCceeEEEeccccc
Q psy9577 301 PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 301 p~n~~~~~~~~~p~~e~l~~f~~~l~~~gi~v~ir~~~G~ 340 (354)
+||++.. .+. -..+.+..+++|+.+....+.|.
T Consensus 182 ~~~~~~~----~~~---~~~l~~~~~~~gi~v~a~spL~~ 214 (327)
T 3eau_A 182 EYHMFQR----EKV---EVQLPELFHKIGVGAMTWSPLAC 214 (327)
T ss_dssp ECBTTBC----HHH---HHHHHHHHHHHCCEEEEECTTGG
T ss_pred ccccccc----chh---HhhHHHHHHHcCCeEEEeccccC
Confidence 8887632 111 12355667888999988876654
No 45
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}
Probab=22.59 E-value=3e+02 Score=25.14 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=51.4
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHH
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKI 320 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~ 320 (354)
.++++.++++.++.+.+ + |+++=+- |-+.++++++.+..+ .+..+|-++||++.. . ..
T Consensus 152 ~~~~e~~~al~~l~~~G---k--ir~iGvS--n~~~~~l~~~~~~~~-----~~~~~~Q~~~~~~~~-------~---~~ 209 (334)
T 3krb_A 152 VPLADTWRAMEQLVEEG---L--VKHIGVS--NYTVPLLADLLNYAK-----IKPLVNQIEIHPWHP-------N---DA 209 (334)
T ss_dssp CCHHHHHHHHHHHHHHT---S--EEEEEEE--SCCHHHHHHHHHHCS-----SCCSEEEEECBTTBC-------C---HH
T ss_pred CCHHHHHHHHHHHHHcC---C--ccEEEEe--cCCHHHHHHHHHhCC-----CceEEeeeecCcccc-------c---HH
Confidence 57889999999887653 2 2333333 445667766665442 345667788887642 1 35
Q ss_pred HHHHHhhCceeEEEeccccc
Q psy9577 321 FAKILMNSGIFVTIRKIRGN 340 (354)
Q Consensus 321 f~~~l~~~gi~v~ir~~~G~ 340 (354)
+.+..+++|+.+....+.|.
T Consensus 210 l~~~c~~~gI~v~ayspL~~ 229 (334)
T 3krb_A 210 TVKFCLDNGIGVTAYSPMGG 229 (334)
T ss_dssp HHHHHHHTTCEEEEESTTCC
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 67788899999988876654
No 46
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.50 E-value=3.7e+02 Score=24.14 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=34.5
Q ss_pred cCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHHHHHHHhh
Q psy9577 270 HGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMN 327 (354)
Q Consensus 270 ~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~f~~~l~~ 327 (354)
-.+|++++++.++++.+++ ....|++|-|-.. .+ ..+.+++|.+....
T Consensus 116 s~~~~~~~~l~~lak~lkk----~gI~v~vIgFG~~---~~---n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 116 SPISDSRDELIRLAKTLKK----NNVAVDIINFGEI---EQ---NTELLDEFIAAVNN 163 (268)
T ss_dssp SCCSSCHHHHHHHHHHHHH----HTEEEEEEEESSC---CS---SCCHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHH----cCCEEEEEEeCCC---cc---chHHHHHHHHHhcC
Confidence 4578888889999998888 5577888877532 12 34568888888854
No 47
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=22.02 E-value=4.9 Score=40.87 Aligned_cols=38 Identities=11% Similarity=-0.098 Sum_probs=29.2
Q ss_pred eeeeccCcccccc---ccccceeeeeeccccccccceeEEeecccchh
Q psy9577 162 IVMMGMGEPLLNY---KSTIGALKLILSDHAYGLSRRHVILSTSGIIP 206 (354)
Q Consensus 162 Vvf~GmGEPlln~---~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p 206 (354)
|++++ |||+.+. ++..+++..+++ .|+ +..++|++..+
T Consensus 233 v~~s~-ge~f~~~~g~~~~~~l~~alk~-lGf-----~~v~dt~~~ad 273 (574)
T 3c8y_A 233 VRASI-GELFNMGFGVDVTGKIYTALRQ-LGF-----DKIFDINFGAD 273 (574)
T ss_dssp GGGTG-GGGGTCCSSCCCHHHHHHHHHH-HTC-----SEEEEHHHHHH
T ss_pred eeeec-hhhhccccCchHHHHHHHHHHH-cCC-----CEEeecccchh
Confidence 55555 9999875 567778888886 788 88899998765
No 48
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=21.86 E-value=3e+02 Score=25.22 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=49.3
Q ss_pred CchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchhHHH
Q psy9577 241 YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKI 320 (354)
Q Consensus 241 ~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~l~~ 320 (354)
.++++.++++.++.+.+. | +++=+- |-+.++++++.+... .+..+|-++||+.... ..
T Consensus 154 ~~~~e~~~aL~~l~~~Gk---i--r~iGvS--n~~~~~l~~~~~~~~-----~~~~~~Q~~~~~~~~~----------~~ 211 (335)
T 3h7u_A 154 VDIPSTWKAMEALYDSGK---A--RAIGVS--NFSTKKLADLLELAR-----VPPAVNQVECHPSWRQ----------TK 211 (335)
T ss_dssp CCHHHHHHHHHHHHHTTS---B--SSEEEE--SCCHHHHHHHHHHCS-----SCCSEEEEECBTTBCC----------HH
T ss_pred CCHHHHHHHHHHHHHcCC---c--cEEEec--CCCHHHHHHHHHhCC-----CCeEEEecccccccCC----------HH
Confidence 467899999998876542 2 222222 445666666655442 3455677888875321 34
Q ss_pred HHHHHhhCceeEEEecccc
Q psy9577 321 FAKILMNSGIFVTIRKIRG 339 (354)
Q Consensus 321 f~~~l~~~gi~v~ir~~~G 339 (354)
+.+..+++|+.+....+.|
T Consensus 212 l~~~~~~~gI~v~a~sPL~ 230 (335)
T 3h7u_A 212 LQEFCKSKGVHLSAYSPLG 230 (335)
T ss_dssp HHHHHHHHTCEEEEESTTC
T ss_pred HHHHHHHCCCEEEEeccCc
Confidence 6677888899998887664
No 49
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=21.85 E-value=1.1e+02 Score=31.79 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=7.3
Q ss_pred CchHHHHHHHhhhh
Q psy9577 241 YPLKELILACHRYI 254 (354)
Q Consensus 241 ~~l~~il~~l~~~~ 254 (354)
++.+.+++.++...
T Consensus 141 ~s~~~ik~~id~ma 154 (716)
T 2cho_A 141 WSHQARLSQLKFYG 154 (716)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34555555555443
No 50
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=21.53 E-value=94 Score=31.63 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=10.2
Q ss_pred CchHHHHHHHhhhhc
Q psy9577 241 YPLKELILACHRYIT 255 (354)
Q Consensus 241 ~~l~~il~~l~~~~~ 255 (354)
++.+.+++.++.+..
T Consensus 163 ~~~~~ik~~id~ma~ 177 (594)
T 2v5c_A 163 WTHQDRLDQIKFYGE 177 (594)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 467777777776653
No 51
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=21.47 E-value=1.2e+02 Score=20.62 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHhC----CCccchHHHHHHHHHh------CcCcchhhhhhHHHHH
Q psy9577 7 LSPLKFVNYCKELG----EMPFRAKQLQKWIHKF------GVSDFNKMTDLSMSLR 52 (354)
Q Consensus 7 ~~~~~l~~~~~~~g----~~~~r~~qi~~~~~~~------~~~~~~~~~~l~~~~r 52 (354)
++.+||..++..+| ...-..+++.+.+++. |.-+|+++...-..+.
T Consensus 24 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~~ 79 (83)
T 1yx7_A 24 VTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELL 79 (83)
T ss_dssp CSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHHH
Confidence 78899999999888 2344455544444433 3456666655444443
No 52
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=21.42 E-value=33 Score=31.45 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=0.0
Q ss_pred cchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcc---ccccccccceeeeeeccccccccceeEEe-ec
Q psy9577 126 NLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP---LLNYKSTIGALKLILSDHAYGLSRRHVIL-ST 201 (354)
Q Consensus 126 ~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEP---lln~~~v~~~l~~l~~~~g~~~~~r~itv-sT 201 (354)
+.|.+|.++.+....++..+. |..+..-+.+..|-| -.+++++.+.++.+.+ .|.. .|.+ +|
T Consensus 113 ~~~~~e~l~~~~~~i~~a~~~---------G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Ga~----~i~l~DT 178 (298)
T 2cw6_A 113 NCSIEESFQRFDAILKAAQSA---------NISVRGYVSCALGCPYEGKISPAKVAEVTKKFYS-MGCY----EISLGDT 178 (298)
T ss_dssp SCCHHHHHHHHHHHHHHHHHT---------TCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHH-TTCS----EEEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHHC---------CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHH-cCCC----EEEecCC
Q ss_pred ccch-hc-hHhhhhcC--cc-eeEEeeccCcc
Q psy9577 202 SGII-PM-IDKLAQEC--PV-ELAVSLHASNN 228 (354)
Q Consensus 202 ~G~~-p~-i~~l~~~~--~~-~LaiSL~a~~~ 228 (354)
.|+. |. +.++.+.+ .+ .+.+++|.-|+
T Consensus 179 ~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~ 210 (298)
T 2cw6_A 179 IGVGTPGIMKDMLSAVMQEVPLAALAVHCHDT 210 (298)
T ss_dssp TSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCCeEEEEECCC
No 53
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=20.88 E-value=71 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.9
Q ss_pred cccCCCChhHHHHHHHHhCCCc
Q psy9577 2 TNLLDLSPLKFVNYCKELGEMP 23 (354)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~ 23 (354)
.++..|+..||+++|...|.+.
T Consensus 8 ~~l~klkV~eLK~~L~~rGL~~ 29 (55)
T 2do1_A 8 VELHKLKLAELKQECLARGLET 29 (55)
T ss_dssp CCTTTSCHHHHHHHHHHHTCCC
T ss_pred cCHHHCcHHHHHHHHHHcCCCC
Confidence 4577899999999999999874
No 54
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.77 E-value=1.3e+02 Score=27.58 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=12.5
Q ss_pred eccCCCCchHHHHHHHHHhhcC
Q psy9577 268 MLHGINDTDIHAIELISLMRKN 289 (354)
Q Consensus 268 lI~GvNDs~ed~~~La~ll~~~ 289 (354)
+|-|+..+.+++.++++.+++.
T Consensus 84 ViaGvg~~t~~ai~la~~A~~~ 105 (316)
T 3e96_A 84 VVAGIGYATSTAIELGNAAKAA 105 (316)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEeCcCHHHHHHHHHHHHhc
Confidence 3444434566666666666653
No 55
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=20.24 E-value=90 Score=32.53 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=9.9
Q ss_pred CchHHHHHHHhhhhc
Q psy9577 241 YPLKELILACHRYIT 255 (354)
Q Consensus 241 ~~l~~il~~l~~~~~ 255 (354)
++.+.+++.++.+..
T Consensus 163 ~~~~~~~~~id~ma~ 177 (737)
T 2v5d_A 163 WTHQDRLDQIKFYGE 177 (737)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 467777777776553
Done!