Your job contains 1 sequence.
>psy9577
MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY
IKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR
QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA
LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK
YPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLI
PFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9577
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q603C0 - symbol:rlmN "Dual-specificity RNA meth... 900 3.1e-90 1
UNIPROTKB|Q83C77 - symbol:rlmN "Dual-specificity RNA meth... 859 6.9e-86 1
TIGR_CMR|CBU_1252 - symbol:CBU_1252 "radical SAM enzyme, ... 859 6.9e-86 1
UNIPROTKB|Q8EC29 - symbol:rlmN "Dual-specificity RNA meth... 851 4.9e-85 1
TIGR_CMR|SO_3315 - symbol:SO_3315 "conserved hypothetical... 851 4.9e-85 1
UNIPROTKB|P36979 - symbol:rlmN "23S rRNA m2A2503 methyltr... 833 3.9e-83 1
UNIPROTKB|Q47WB7 - symbol:rlmN "Dual-specificity RNA meth... 804 4.7e-80 1
TIGR_CMR|CPS_4255 - symbol:CPS_4255 "radical SAM enzyme, ... 804 4.7e-80 1
UNIPROTKB|Q9KTX3 - symbol:rlmN "Dual-specificity RNA meth... 790 1.4e-78 1
TIGR_CMR|VC_0757 - symbol:VC_0757 "conserved hypothetical... 790 1.4e-78 1
TIGR_CMR|SPO_3346 - symbol:SPO_3346 "radical SAM enzyme, ... 674 2.8e-66 1
DICTYBASE|DDB_G0288255 - symbol:DDB_G0288255 "putative ri... 636 3.0e-62 1
UNIPROTKB|Q3AC22 - symbol:rlmN "Probable dual-specificity... 617 3.1e-60 1
TIGR_CMR|CHY_1480 - symbol:CHY_1480 "radical SAM enzyme, ... 617 3.1e-60 1
UNIPROTKB|Q81WH4 - symbol:rlmN "Probable dual-specificity... 600 1.9e-58 1
TIGR_CMR|BA_4002 - symbol:BA_4002 "conserved hypothetical... 600 1.9e-58 1
UNIPROTKB|Q74E53 - symbol:rlmN "Dual-specificity RNA meth... 591 1.7e-57 1
TIGR_CMR|GSU_1111 - symbol:GSU_1111 "conserved hypothetic... 591 1.7e-57 1
UNIPROTKB|Q723G9 - symbol:rlmN "Probable dual-specificity... 509 8.5e-49 1
TIGR_CMR|CJE_1882 - symbol:CJE_1882 "radical SAM enzyme, ... 502 4.7e-48 1
TAIR|locus:2195608 - symbol:AT1G60230 species:3702 "Arabi... 495 2.6e-47 1
TAIR|locus:2043225 - symbol:AT2G39670 species:3702 "Arabi... 485 3.0e-46 1
UNIPROTKB|P0A644 - symbol:rlmN "Probable dual-specificity... 465 3.9e-44 1
GENEDB_PFALCIPARUM|PF14_0066 - symbol:PF14_0066 "radical ... 374 1.7e-34 1
UNIPROTKB|Q8IM25 - symbol:PF14_0066 "Radical SAM protein,... 374 1.7e-34 1
UNIPROTKB|O83107 - symbol:rlmN "Probable dual-specificity... 338 1.1e-30 1
TAIR|locus:2091161 - symbol:AT3G19630 species:3702 "Arabi... 328 1.3e-29 1
>UNIPROTKB|Q603C0 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 EMBL:AE017282
GenomeReviews:AE017282_GR GO:GO:0001510 eggNOG:COG0820 KO:K06941
OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_115280.1 ProteinModelPortal:Q603C0 GeneID:3104120
KEGG:mca:MCA2887 PATRIC:22609656 Uniprot:Q603C0
Length = 366
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 180/352 (51%), Positives = 239/352 (67%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL + LGE PFRA QL +WIH+ GV+DF MT+LS +LR +L+ I+
Sbjct: 15 NLLDLDREGMEAFFVRLGEKPFRASQLLQWIHQRGVTDFGLMTNLSKTLRSRLEAVSEIR 74
Query: 63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P ++ +Q S DGTRKW+ V N +ETV IP++ RNTLC+S+QVGC++ C FCST RQ
Sbjct: 75 PPELVLEQRSADGTRKWVLQVDAVNRVETVLIPDEGRNTLCVSSQVGCSLECSFCSTARQ 134
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT EIIGQLWV + +L E+ +I+N+V+MGMGEPLLN+ + + A
Sbjct: 135 GFNRNLTTAEIIGQLWVAQHRLDEEQ----------RISNVVLMGMGEPLLNFGNVVAAT 184
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+L++ D AYGLS+R V LSTSGI+P +D+LA+ + LAVSLHA ++ LRN+LVPI++KY
Sbjct: 185 RLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAVSLHAPDDTLRNELVPINRKY 244
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P++EL+ AC RY+ R +TFEY ML G+ND HA L+ L+ K+NLIP
Sbjct: 245 PIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLSH----VPSKVNLIP 300
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
FN FPNS CS I FA+ L ++G+ T RK RG DI+AACGQL GK+
Sbjct: 301 FNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAACGQLVGKV 352
>UNIPROTKB|Q83C77 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 169/351 (48%), Positives = 236/351 (67%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+LS + + G+ +RA QL +WIH+ GV+DF+ MTDLS R++L + +++
Sbjct: 6 NLLNLSEPELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVR 65
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +++S DGT KW+F + N IETVFIP++ R TLC+S+QVGCA+NC FC+TG++
Sbjct: 66 VPELALERVSADGTHKWLFRLADNNKIETVFIPDRKRGTLCVSSQVGCALNCSFCATGKE 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT+ EIIGQ+W+ L+ +ITN+VMMGMGEPLLNY++ + A+
Sbjct: 126 GFNRNLTLAEIIGQVWLAARLLK----------SPYKITNVVMMGMGEPLLNYEAVVAAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ DHAYGLS+ V LSTSG+IP + +L +E PV LAVSLHA N+ LRN L+P++KKY
Sbjct: 176 HLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
L +LI C Y + + +TFEY M+ G+ND I A +LI L+ CKINLIP
Sbjct: 236 SLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLAD----VPCKINLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
FN F + CS S I +F K LM++G +R+ RG+DI ACGQL+G+
Sbjct: 292 FNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLAGQ 342
>TIGR_CMR|CBU_1252 [details] [associations]
symbol:CBU_1252 "radical SAM enzyme, Cfr family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 169/351 (48%), Positives = 236/351 (67%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+LS + + G+ +RA QL +WIH+ GV+DF+ MTDLS R++L + +++
Sbjct: 6 NLLNLSEPELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVR 65
Query: 63 APHIMSDQISFDGTRKWIFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
P + +++S DGT KW+F + N IETVFIP++ R TLC+S+QVGCA+NC FC+TG++
Sbjct: 66 VPELALERVSADGTHKWLFRLADNNKIETVFIPDRKRGTLCVSSQVGCALNCSFCATGKE 125
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLT+ EIIGQ+W+ L+ +ITN+VMMGMGEPLLNY++ + A+
Sbjct: 126 GFNRNLTLAEIIGQVWLAARLLK----------SPYKITNVVMMGMGEPLLNYEAVVAAM 175
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
L++ DHAYGLS+ V LSTSG+IP + +L +E PV LAVSLHA N+ LRN L+P++KKY
Sbjct: 176 HLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESPVSLAVSLHAPNDALRNVLIPLNKKY 235
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
L +LI C Y + + +TFEY M+ G+ND I A +LI L+ CKINLIP
Sbjct: 236 SLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRLLAD----VPCKINLIP 291
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
FN F + CS S I +F K LM++G +R+ RG+DI ACGQL+G+
Sbjct: 292 FNSFQGTAYRCSTESAISVFQKCLMDAGFNTRVRRTRGDDIAGACGQLAGQ 342
>UNIPROTKB|Q8EC29 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 183/354 (51%), Positives = 231/354 (65%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISGYQKSADGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKET-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>TIGR_CMR|SO_3315 [details] [associations]
symbol:SO_3315 "conserved hypothetical protein TIGR00048"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 183/354 (51%), Positives = 231/354 (65%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL +LGE PFRA QL KWI+ FGVSDF +MT+++ LR+KL I
Sbjct: 7 NLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAARCEIV 66
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q S DGT K+ HV + +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 APEISGYQKSADGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNLTV EI+GQ+W L K G+R ITN+VMMGMGEPLLN + I A+
Sbjct: 127 GFNRNLTVSEIVGQIWRVSHFLGFAKET-----GERPITNVVMMGMGEPLLNLANVIPAM 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
++L D + LS+R V LSTSG++P +DKL V LAVS+HA N+ LR+ LVP++KKY
Sbjct: 182 DIMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKY 241
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
PL+E + RYI S R +T EY ML IND+ A EL LM+ T CK+NL
Sbjct: 242 PLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKD----TPCKVNL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F+K+LM G+ V +RK RG+DI+AACGQL+G I
Sbjct: 298 IPFNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDI 351
>UNIPROTKB|P36979 [details] [associations]
symbol:rlmN "23S rRNA m2A2503 methyltransferase and tRNA
m2A37 methyltransferase" species:83333 "Escherichia coli K-12"
[GO:0000049 "tRNA binding" evidence=IDA] [GO:0002935 "tRNA
(adenine-C2-)-methyltransferase activity" evidence=IMP;IDA]
[GO:0030488 "tRNA methylation" evidence=IMP;IDA] [GO:0070475 "rRNA
base methylation" evidence=IMP] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070040 "rRNA (adenine-C2-)-methyltransferase activity"
evidence=IEA;IMP;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0046677 GO:GO:0051539
GO:GO:0000049 GO:GO:0070475 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
EMBL:U02965 PIR:D65028 RefSeq:NP_417012.1 RefSeq:YP_490745.1
PDB:3RF9 PDB:3RFA PDBsum:3RF9 PDBsum:3RFA ProteinModelPortal:P36979
SMR:P36979 DIP:DIP-12035N IntAct:P36979 MINT:MINT-1220055
PaxDb:P36979 PRIDE:P36979 EnsemblBacteria:EBESCT00000004286
EnsemblBacteria:EBESCT00000016514 GeneID:12932308 GeneID:946249
KEGG:ecj:Y75_p2470 KEGG:eco:b2517 PATRIC:32120427 EchoBASE:EB2301
EcoGene:EG12401 OMA:IYHFGVS BioCyc:EcoCyc:EG12401-MONOMER
BioCyc:ECOL316407:JW2501-MONOMER BioCyc:MetaCyc:EG12401-MONOMER
Genevestigator:P36979 GO:GO:0002935 Uniprot:P36979
Length = 384
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 169/355 (47%), Positives = 236/355 (66%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLLDL+ + + K+LGE PFRA Q+ KW++ + +F++MTD++ LR KLK I+
Sbjct: 19 NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
AP ++ +Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79 APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
F RNL V EIIGQ+W R K + G+R ITN+VMMGMGEPLLN + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V LSTSG++P +DKL V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + A RY+ S + +T EY ML +ND HA +L L++ T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IP+N FP + S NSRI F+K+LM+ G +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>UNIPROTKB|Q47WB7 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 RefSeq:YP_270905.1 ProteinModelPortal:Q47WB7
STRING:Q47WB7 GeneID:3518965 KEGG:cps:CPS_4255 PATRIC:21471375
HOGENOM:HOG000217992 ProtClustDB:PRK11194
BioCyc:CPSY167879:GI48-4265-MONOMER Uniprot:Q47WB7
Length = 386
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 174/354 (49%), Positives = 230/354 (64%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ Y + +GE PFRA Q+ KWI+ FG SDF +MT+++ LR+KL+ + I
Sbjct: 9 NLLNFDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQRNCIIS 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q+S DGT K+ ++ +ETV+IPE +R TLC+S+QVGCA+ C FC+T +Q
Sbjct: 69 APDISEKQVSEDGTIKYALKLEGGQEVETVWIPENDRATLCVSSQVGCALECTFCATAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL++ EIIGQ+W R +I G R ITNIVMMGMGEPLLN K+ I A
Sbjct: 129 GFNRNLSMAEIIGQVW------RVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L +L+D YGLS+R V +STSG++P +D L + LA+S+HA NN LR++LVPI+KK
Sbjct: 183 LDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHAPNNKLRDELVPINKK 242
Query: 241 YPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL++ I A RYI S + T EY ML +ND+ A EL + K L S KINL
Sbjct: 243 YPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHAL---KGLPS-KINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F K+L + G+ V R+ RG DI+AACGQL+G +
Sbjct: 299 IPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQLAGDV 352
>TIGR_CMR|CPS_4255 [details] [associations]
symbol:CPS_4255 "radical SAM enzyme, Cfr family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_270905.1
ProteinModelPortal:Q47WB7 STRING:Q47WB7 GeneID:3518965
KEGG:cps:CPS_4255 PATRIC:21471375 HOGENOM:HOG000217992
ProtClustDB:PRK11194 BioCyc:CPSY167879:GI48-4265-MONOMER
Uniprot:Q47WB7
Length = 386
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 174/354 (49%), Positives = 230/354 (64%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NLL+ Y + +GE PFRA Q+ KWI+ FG SDF +MT+++ LR+KL+ + I
Sbjct: 9 NLLNFDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQRNCIIS 68
Query: 63 APHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
AP I Q+S DGT K+ ++ +ETV+IPE +R TLC+S+QVGCA+ C FC+T +Q
Sbjct: 69 APDISEKQVSEDGTIKYALKLEGGQEVETVWIPENDRATLCVSSQVGCALECTFCATAQQ 128
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINS-QGKRQITNIVMMGMGEPLLNYKSTIGA 180
GF RNL++ EIIGQ+W R +I G R ITNIVMMGMGEPLLN K+ I A
Sbjct: 129 GFNRNLSMAEIIGQVW------RVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPA 182
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
L +L+D YGLS+R V +STSG++P +D L + LA+S+HA NN LR++LVPI+KK
Sbjct: 183 LDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKIDCALAISIHAPNNKLRDELVPINKK 242
Query: 241 YPLKELILACHRYITYSPRH-MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
YPL++ I A RYI S + T EY ML +ND+ A EL + K L S KINL
Sbjct: 243 YPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAHAL---KGLPS-KINL 298
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
IPFN +P S S NSRI F K+L + G+ V R+ RG DI+AACGQL+G +
Sbjct: 299 IPFNPYPGSPYSRSSNSRIDRFDKVLQSYGLTVITRRTRGEDIDAACGQLAGDV 352
>UNIPROTKB|Q9KTX3 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 167/355 (47%), Positives = 230/355 (64%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W + RE ++ G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVW----RAAREIGLE-KETGRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL L++ T CKINL
Sbjct: 242 NIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>TIGR_CMR|VC_0757 [details] [associations]
symbol:VC_0757 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 167/355 (47%), Positives = 230/355 (64%)
Query: 3 NLLDLSPLKFVNY-CKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
NLLD + +ELGE FRA+Q+ KWI+ FG DF++M +++ LR+KLK I
Sbjct: 7 NLLDFDRKGLRTFFAEELGEKAFRAEQVMKWIYHFGCDDFDQMNNINKQLREKLKAKCEI 66
Query: 62 KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
+AP++ Q S DGT KW V +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 67 RAPYVSEAQHSADGTIKWAMRVGDQDVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 126
Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
GF RNL V EIIGQ+W + RE ++ G+R ITN+VMMGMGEPLLN K+ I AL
Sbjct: 127 GFNRNLRVSEIIGQVW----RAAREIGLE-KETGRRPITNVVMMGMGEPLLNMKNLIPAL 181
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
+++L D +GLS+R V +STSG++ ++++ + V LA+SLHA N+ LR++++PI+ ++
Sbjct: 182 EIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQIDVALAISLHAPNDKLRSEIMPINDRW 241
Query: 242 PLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
++ + RYI S R +T EY +L +ND HA EL L++ T CKINL
Sbjct: 242 NIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELAELLKG----TPCKINL 297
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
IPFN +P S NSRI F K LM VTIRK RG+DI+AACGQL G ++
Sbjct: 298 IPFNPYPGSPYKKPSNSRIDRFQKTLMQYEHTVTIRKTRGDDIDAACGQLVGDVI 352
>TIGR_CMR|SPO_3346 [details] [associations]
symbol:SPO_3346 "radical SAM enzyme, Cfr family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_168542.1 ProteinModelPortal:Q5LN66 GeneID:3195026
KEGG:sil:SPO3346 PATRIC:23380143 ProtClustDB:CLSK934133
Uniprot:Q5LN66
Length = 393
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 141/326 (43%), Positives = 204/326 (62%)
Query: 25 RAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVK 84
R Q+ +WI+++GV DF MT+L+ + R +L I+ P +++ +S DGTRK++ +
Sbjct: 50 RVGQIWQWIYQWGVRDFEAMTNLAKAYRAQLAEHFTIEIPEVITRLVSEDGTRKYLVRIA 109
Query: 85 K-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKL 143
+ +E V+IPE++R TLCIS+QVGC + C FC TG Q VRNLT EI+GQ+ + L
Sbjct: 110 GGHEVEVVYIPEEDRGTLCISSQVGCTLTCSFCHTGTQKLVRNLTAAEIVGQVMMARDDL 169
Query: 144 RREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSG 203
R ++NIV+MGMGEPL N+ + A+K+ + LSRR + LSTSG
Sbjct: 170 GEWPVPGAPKDETRLLSNIVLMGMGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSG 229
Query: 204 IIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMIT 263
++P I + A+E LA+S HA+ + +R+ LVPI+K++ ++EL+ A Y S IT
Sbjct: 230 VVPEIARTAEEIGCLLAISFHATTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERIT 289
Query: 264 FEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAK 323
FEY ML G+ND+D A L+ +R+ KI KINLIPFN +P + S N+RI+ FA
Sbjct: 290 FEYVMLDGVNDSDADAHRLLDHIRRYKI--PAKINLIPFNEWPGAPYKRSSNNRIRAFAN 347
Query: 324 ILMNSGIFVTIRKIRGNDINAACGQL 349
I+ +G IRK RG+DI AACGQL
Sbjct: 348 IIYQAGYAAPIRKTRGDDIMAACGQL 373
>DICTYBASE|DDB_G0288255 [details] [associations]
symbol:DDB_G0288255 "putative ribosomal RNA large
subunit methyltransferase N" species:44689 "Dictyostelium
discoideum" [GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
dictyBase:DDB_G0288255 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AAFI02000109 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0820 TIGRFAMs:TIGR00048 OMA:EMVFIPD
RefSeq:XP_636811.1 ProteinModelPortal:Q54J76 STRING:Q54J76
EnsemblProtists:DDB0304824 GeneID:8626528 KEGG:ddi:DDB_G0288255
InParanoid:Q54J76 Uniprot:Q54J76
Length = 407
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 135/349 (38%), Positives = 210/349 (60%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
NL+ + + + +LG + ++Q+ +++ G+ D N +S R+++K+ +
Sbjct: 50 NLIGIQKDELEDKVLKLGYPKYLSEQIWAFMYNKGIVDINSFERVSKEKREEIKSKYEVN 109
Query: 63 APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
I Q+S DGTRK + +E+VFIPE R TLC+S+QVGC C FC TG Q
Sbjct: 110 IGEITKHQLSVDGTRKLLISFDGAEVESVFIPEGKRGTLCVSSQVGCTFACTFCHTGTQK 169
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALK 182
F+RNLT EI+ Q+ T L N +S KR +TNIV MG GEP NY++ A+K
Sbjct: 170 FIRNLTASEIVSQVIATRHVL----NDFTDSSIKRTLTNIVFMGQGEPFYNYRNVSKAIK 225
Query: 183 LILSDHAYGLSRRHVILSTSGIIPMIDKLAQECP-VELAVSLHASNNNLRNKLVPISKKY 241
+I + + + + +STSG++P+ID+L + P + LA+SLH++N+ R+++VP ++++
Sbjct: 226 IITDPNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLAISLHSANDKTRSEIVPANRQW 285
Query: 242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
P+ EL+ AC ++ + + + IT EY ML G+ND++ A +L+ L +K S +NLIP
Sbjct: 286 PISELVEACIKF-SKNCKERITIEYVMLKGVNDSEQDAYDLVKL---SKSFPSF-VNLIP 340
Query: 302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLS 350
FN +P S S I F+KIL + GI VTIR+ RG DI AACGQL+
Sbjct: 341 FNPWPGSQYKSSSKETISQFSKILDDKGIKVTIRQPRGRDILAACGQLN 389
>UNIPROTKB|Q3AC22 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_360312.1 ProteinModelPortal:Q3AC22 STRING:Q3AC22
GeneID:3728344 KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 140/355 (39%), Positives = 212/355 (59%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M LDL+ + V + KE E FR KQ+ +WI K G DFNKMT+L + LR+KLK +
Sbjct: 1 MRAFLDLNSEEIVAWLKENNEKSFRLKQINEWIFKHGELDFNKMTNLPVRLREKLKENFL 60
Query: 61 IKAPHIMSDQISFDGTR-KWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ + I+ + S DG K++ +K N+ IE V + + NT+C+STQVGC + C FC+T
Sbjct: 61 LPSLKIIHSKKSRDGQSIKYLLKLKDNLGIEAVLLKYRYGNTVCLSTQVGCKMGCKFCAT 120
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
G GF RNLT GE+I Q+ V +K +S K IT +V+MG GEPL N+ +
Sbjct: 121 GLGGFSRNLTAGEMIEQILV----------LKASSSEK--ITRVVLMGSGEPLDNFTEVL 168
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPI 237
++ I +S R + +ST G++P I LA+E PV LA+SLHA ++ LRN+L+PI
Sbjct: 169 KFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAPDDALRNELIPI 228
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+K++ L EL+ A +I + R ++FEY ++ +NDT HA++L L+++ + +
Sbjct: 229 NKRWGLAELLDAAWYFIDKTGRR-VSFEYALIENVNDTVEHALKLAQLLQRKLV----HV 283
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
NLIP+N N +I F ++L +GI VT+R+ G++I+ ACGQL K
Sbjct: 284 NLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQLKAK 338
>TIGR_CMR|CHY_1480 [details] [associations]
symbol:CHY_1480 "radical SAM enzyme, Cfr family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_360312.1
ProteinModelPortal:Q3AC22 STRING:Q3AC22 GeneID:3728344
KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 140/355 (39%), Positives = 212/355 (59%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
M LDL+ + V + KE E FR KQ+ +WI K G DFNKMT+L + LR+KLK +
Sbjct: 1 MRAFLDLNSEEIVAWLKENNEKSFRLKQINEWIFKHGELDFNKMTNLPVRLREKLKENFL 60
Query: 61 IKAPHIMSDQISFDGTR-KWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCST 118
+ + I+ + S DG K++ +K N+ IE V + + NT+C+STQVGC + C FC+T
Sbjct: 61 LPSLKIIHSKKSRDGQSIKYLLKLKDNLGIEAVLLKYRYGNTVCLSTQVGCKMGCKFCAT 120
Query: 119 GRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTI 178
G GF RNLT GE+I Q+ V +K +S K IT +V+MG GEPL N+ +
Sbjct: 121 GLGGFSRNLTAGEMIEQILV----------LKASSSEK--ITRVVLMGSGEPLDNFTEVL 168
Query: 179 GALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPI 237
++ I +S R + +ST G++P I LA+E PV LA+SLHA ++ LRN+L+PI
Sbjct: 169 KFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAPDDALRNELIPI 228
Query: 238 SKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKI 297
+K++ L EL+ A +I + R ++FEY ++ +NDT HA++L L+++ + +
Sbjct: 229 NKRWGLAELLDAAWYFIDKTGRR-VSFEYALIENVNDTVEHALKLAQLLQRKLV----HV 283
Query: 298 NLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
NLIP+N N +I F ++L +GI VT+R+ G++I+ ACGQL K
Sbjct: 284 NLIPYNTIEKRNFKTPSVEKINKFKEVLKRAGIPVTVRRELGDEIDGACGQLKAK 338
>UNIPROTKB|Q81WH4 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 135/341 (39%), Positives = 206/341 (60%)
Query: 14 NYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF 73
++ KE GE FRA Q+ W++K V ++ M++LS LR+KL NS I + + Q S
Sbjct: 29 DWLKEQGEPKFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKLSNSFDITTLNTLVKQTSS 88
Query: 74 DGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEI 132
DGT K++F + IETV + + N++C++TQVGC I C FC++ G RNL GEI
Sbjct: 89 DGTIKFLFQLYDGYSIETVLMRHEYGNSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 148
Query: 133 IGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
+ Q V E + + + + +++++V+MG+GEP NY + +G L++I + +
Sbjct: 149 VAQ--VVEVQ-------RALDESEERVSSLVVMGIGEPFDNYDNLMGFLRIINHEKGLHI 199
Query: 193 SRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251
RH+ +STSGIIP I K A+E + A+SLHA N+ LR+KL+PI++ Y L +L+ A
Sbjct: 200 GARHMTVSTSGIIPKIYKFAEEDLQINFAISLHAPNSELRSKLMPINRAYKLPDLMEAIK 259
Query: 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
Y+ + R ITFEY + G ND HA EL +L++ K C +NLIP N P + +
Sbjct: 260 YYVNRTGRR-ITFEYGLFGGENDQVEHAEELAALLKGVK----CHVNLIPVNYVPERDYV 314
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
+ +I +F K L + G+ VTIR+ +G+DI+AACGQL K
Sbjct: 315 RTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACGQLRAK 355
>TIGR_CMR|BA_4002 [details] [associations]
symbol:BA_4002 "conserved hypothetical protein TIGR00048"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 135/341 (39%), Positives = 206/341 (60%)
Query: 14 NYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISF 73
++ KE GE FRA Q+ W++K V ++ M++LS LR+KL NS I + + Q S
Sbjct: 29 DWLKEQGEPKFRAGQIFDWLYKKRVKNYEDMSNLSKGLREKLSNSFDITTLNTLVKQTSS 88
Query: 74 DGTRKWIFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEI 132
DGT K++F + IETV + + N++C++TQVGC I C FC++ G RNL GEI
Sbjct: 89 DGTIKFLFQLYDGYSIETVLMRHEYGNSICVTTQVGCRIGCTFCASTLGGLKRNLEAGEI 148
Query: 133 IGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGL 192
+ Q V E + + + + +++++V+MG+GEP NY + +G L++I + +
Sbjct: 149 VAQ--VVEVQ-------RALDESEERVSSLVVMGIGEPFDNYDNLMGFLRIINHEKGLHI 199
Query: 193 SRRHVILSTSGIIPMIDKLAQE-CPVELAVSLHASNNNLRNKLVPISKKYPLKELILACH 251
RH+ +STSGIIP I K A+E + A+SLHA N+ LR+KL+PI++ Y L +L+ A
Sbjct: 200 GARHMTVSTSGIIPKIYKFAEEDLQINFAISLHAPNSELRSKLMPINRAYKLPDLMEAIK 259
Query: 252 RYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLI 311
Y+ + R ITFEY + G ND HA EL +L++ K C +NLIP N P + +
Sbjct: 260 YYVNRTGRR-ITFEYGLFGGENDQVEHAEELAALLKGVK----CHVNLIPVNYVPERDYV 314
Query: 312 CSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
+ +I +F K L + G+ VTIR+ +G+DI+AACGQL K
Sbjct: 315 RTPREQIFLFEKTLKDRGVNVTIRREQGHDIDAACGQLRAK 355
>UNIPROTKB|Q74E53 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 134/335 (40%), Positives = 200/335 (59%)
Query: 20 GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKW 79
G+ +RA+Q+ KW+++ G + F +MTDL+ LR+ L+ + I + +IS DGTRK+
Sbjct: 23 GKERYRARQIFKWLYQRGATSFAEMTDLAKELRRDLEETARISTLSPEALEISRDGTRKY 82
Query: 80 IFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWV 138
+F + +E+V IPE++RNTLCIS+QVGCA+ C FC TG RNLT EI+ Q+
Sbjct: 83 LFRLDDGCSVESVLIPEEDRNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCA 142
Query: 139 TEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVI 198
+ +++ + NIV MGMGEPL N + I AL+++L D S R +
Sbjct: 143 VQ------RDVPVR--------NIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRIT 188
Query: 199 LSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258
+ST+G++P +++L + V LAVSL+A+ + LR++++PI++KYPL L+ AC R+
Sbjct: 189 VSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVLLDACRRF-PLPG 247
Query: 259 RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRI 318
R IT EY +L G+NDT A L+ L+ + S KINLIPFN + I
Sbjct: 248 RRKITIEYVLLGGVNDTLDDAKRLVRLLSD---IPS-KINLIPFNEHEGCSFRSPSQDAI 303
Query: 319 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F + L++ V R RG DI+AACGQL GK+
Sbjct: 304 DRFHRYLLDKHFTVITRSSRGADISAACGQLKGKL 338
>TIGR_CMR|GSU_1111 [details] [associations]
symbol:GSU_1111 "conserved hypothetical protein TIGR00048"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 134/335 (40%), Positives = 200/335 (59%)
Query: 20 GEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKW 79
G+ +RA+Q+ KW+++ G + F +MTDL+ LR+ L+ + I + +IS DGTRK+
Sbjct: 23 GKERYRARQIFKWLYQRGATSFAEMTDLAKELRRDLEETARISTLSPEALEISRDGTRKY 82
Query: 80 IFHVKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWV 138
+F + +E+V IPE++RNTLCIS+QVGCA+ C FC TG RNLT EI+ Q+
Sbjct: 83 LFRLDDGCSVESVLIPEEDRNTLCISSQVGCAMACEFCLTGTFRLTRNLTTAEIVNQVCA 142
Query: 139 TEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVI 198
+ +++ + NIV MGMGEPL N + I AL+++L D S R +
Sbjct: 143 VQ------RDVPVR--------NIVFMGMGEPLANLDNVIRALQIMLHDDGLQFSTRRIT 188
Query: 199 LSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSP 258
+ST+G++P +++L + V LAVSL+A+ + LR++++PI++KYPL L+ AC R+
Sbjct: 189 VSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPLAVLLDACRRF-PLPG 247
Query: 259 RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRI 318
R IT EY +L G+NDT A L+ L+ + S KINLIPFN + I
Sbjct: 248 RRKITIEYVLLGGVNDTLDDAKRLVRLLSD---IPS-KINLIPFNEHEGCSFRSPSQDAI 303
Query: 319 KIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
F + L++ V R RG DI+AACGQL GK+
Sbjct: 304 DRFHRYLLDKHFTVITRSSRGADISAACGQLKGKL 338
>UNIPROTKB|Q723G9 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 ProtClustDB:PRK14455
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_013115.1
ProteinModelPortal:Q723G9 STRING:Q723G9 GeneID:2797600
KEGG:lmf:LMOf2365_0509 PATRIC:20322220 OMA:LRTINDD Uniprot:Q723G9
Length = 367
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 119/355 (33%), Positives = 205/355 (57%)
Query: 2 TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
+++ L+ K + + G+ FRA Q+ W+++ V F +M+++ + L + +
Sbjct: 4 SSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFEEMSNVPKETIELLTANFVM 63
Query: 62 KAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGR 120
Q S DGT K++F + N+IETV + ++ ++C++TQVGC I C FC++G
Sbjct: 64 NTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGLSVCVTTQVGCNIGCTFCASGL 123
Query: 121 QGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
R+LT GEI+ Q+ + L +N++ +++++V+MG+GEP NY + +
Sbjct: 124 LKKSRDLTAGEIVEQIMNVQHYLDG-RNLE------ERVSHVVVMGIGEPFDNYDNVMDF 176
Query: 181 LKLILSDHAYGLSRRHVILSTSGIIP-MIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
L++I D + RH+ +STSG+ P +ID ++ V LA+SLHA NN LR ++ I+K
Sbjct: 177 LRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAISLHAPNNELRTSIMRINK 236
Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
Y +++L+ A H Y+ + R ITFEY ML G+ND A+EL +L+ +++ L +NL
Sbjct: 237 TYSIEKLMEAIHYYVNKTNRR-ITFEYIMLKGVNDHKKEALELAALLGEHRHLAY--VNL 293
Query: 300 IPFNCFPNSNLICSKNSR--IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
IP+N + ++ ++++ + F L +GI IR+ G DI+AACGQL K
Sbjct: 294 IPYNPV-DEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHGTDIDAACGQLRSK 347
>TIGR_CMR|CJE_1882 [details] [associations]
symbol:CJE_1882 "radical SAM enzyme, Cfr family"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_179852.1 ProteinModelPortal:Q5HS83 STRING:Q5HS83
GeneID:3230641 KEGG:cjr:CJE1882 PATRIC:20045594
ProtClustDB:PRK14462 BioCyc:CJEJ195099:GJC0-1921-MONOMER
Uniprot:Q5HS83
Length = 356
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 134/368 (36%), Positives = 203/368 (55%)
Query: 1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
+ N+LD P + K + FR KQ+ +WI++ ++F+ M+ L LR +L + +
Sbjct: 4 LVNILDFLPEELGEKIKPM----FRVKQIYQWIYQKYANNFSDMSSLPKDLRLELAQNFH 59
Query: 61 IKAPHIMSDQISFDGTRKWIFHVKKNI-IETVFIPEKN-------------RNTLCISTQ 106
+ ++ S DG+ K++F + + IE+V +P K R T+C+S+Q
Sbjct: 60 FSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDAEGKRISHARYTICVSSQ 119
Query: 107 VGCAINCIFCSTGRQGFVRNLTVGEIIGQ-LWVTEFKLRREKNIKINSQGKRQITNIVMM 165
VGC C FC T + G RNL+ GEI+GQ LW+ +++ NI +R+I NIV M
Sbjct: 120 VGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWI-----KKQNNIPY----ERRI-NIVYM 169
Query: 166 GMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQ-ECPVELAVSLH 224
GMGEPL N K+ A+K++ + +S R +STSG+ I +L Q V LA+SLH
Sbjct: 170 GMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLH 229
Query: 225 ASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELIS 284
A N+ LR +L+PI+K Y + ++ A + R + FEY ++ GIND HA EL+
Sbjct: 230 AVNDELRTELMPINKAYNIAAIMDAVREF-PIDQRKRVMFEYLLIDGINDKLEHAKELVK 288
Query: 285 LMRKNKILTSCKINLIPFNCFPNSNLICSKNS---RIKIFAKILMNSGIFVTIRKIRGND 341
L+ N I K+NLI FN P+ + + S IK F +L N G+ TIR+ +G D
Sbjct: 289 LL--NGI--KAKVNLILFN--PHEGGLYKRPSLENAIK-FQDLLSNKGVTCTIRESKGLD 341
Query: 342 INAACGQL 349
I+AACGQL
Sbjct: 342 ISAACGQL 349
>TAIR|locus:2195608 [details] [associations]
symbol:AT1G60230 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 SMART:SM00729 EMBL:CP002684
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0051536 GO:GO:0006364
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
OMA:IYHFGVS UniGene:At.43275 UniGene:At.64986 EMBL:AY054695
EMBL:AY081476 IPI:IPI00549143 RefSeq:NP_564755.1
ProteinModelPortal:Q93XX3 SMR:Q93XX3 EnsemblPlants:AT1G60230.1
GeneID:842318 KEGG:ath:AT1G60230 TAIR:At1g60230 InParanoid:Q93XX3
PhylomeDB:Q93XX3 ProtClustDB:CLSN2688935 ArrayExpress:Q93XX3
Genevestigator:Q93XX3 Uniprot:Q93XX3
Length = 458
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 120/334 (35%), Positives = 186/334 (55%)
Query: 20 GEMPFRAKQLQKWIHKFGV--SDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTR 77
G P +A L K ++K + ++ +++ L+ L++ + A + + DGTR
Sbjct: 113 GFRPGQALMLWKRLYKDNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTR 172
Query: 78 KWIFHVKKN-IIETVFIP-EKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQ 135
K +F + +IETV IP ++ R T+C+S+QVGCA+NC FC TGR G RNLT EI+ Q
Sbjct: 173 KILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQ 232
Query: 136 LWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
RR + ++ S ITN+V MGMGEP N + I A +++ ++ S R
Sbjct: 233 AVYA----RRLLSHEVGS-----ITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPR 283
Query: 196 HVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYIT 255
V +STSG++P + + +E LAVSL+A+ + +RN ++PI++KY L L+ ++
Sbjct: 284 KVTVSTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLS 343
Query: 256 YSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKN 315
++ + FEY ML G+ND+ A L+ L++ CKINLI FN S I ++
Sbjct: 344 SRHKYKVLFEYVMLAGVNDSMDDARRLVELVQG----IPCKINLIQFNPHSGSQFIQTEE 399
Query: 316 SRIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
++ F +L G V +R RGND AACGQL
Sbjct: 400 DKMIKFRNVLAEGGCTVLMRFSRGNDQMAACGQL 433
>TAIR|locus:2043225 [details] [associations]
symbol:AT2G39670 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006364 "rRNA processing"
evidence=IEA;RCA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 EMBL:CP002685 Gene3D:3.20.20.70 GO:GO:0051536
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048
IPI:IPI00528130 RefSeq:NP_850319.1 UniGene:At.24979
ProteinModelPortal:F4IVY6 SMR:F4IVY6 PRIDE:F4IVY6
EnsemblPlants:AT2G39670.2 GeneID:818550 KEGG:ath:AT2G39670
OMA:KEHAEAV PhylomeDB:F4IVY6 Uniprot:F4IVY6
Length = 431
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 128/339 (37%), Positives = 185/339 (54%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY-IKAPHIMSDQISFDGTRKWIFH 82
+R KQL I+K V+ ++L ++ RK L + + + I + DGT K +
Sbjct: 87 YRGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGGFKVGRSPIYQTVTATDGTIKLLLK 146
Query: 83 VKKNI-IETVFIP----EKN--RNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQ 135
++ N+ IETV IP EK R T C+S+QVGC + C FC+TG+ GF RNL EII Q
Sbjct: 147 LEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQ 206
Query: 136 LWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRR 195
+ + I K ++TN+V MGMGEP+LN KS + A + + D G +R
Sbjct: 207 V------------LAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIG--QR 252
Query: 196 HVILSTSGIIPMIDKLAQ-ECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYI 254
+ +ST G+ I KLA + LAVSLHA N +LR K+VP +K YPL+ ++ C Y
Sbjct: 253 MITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYF 312
Query: 255 TYSPRHMITFEYCMLHGINDTDIHAIELISLMRK-NKILTSCKINLIPFNCFPNSNLICS 313
+ R ++FEY +L G+ND HA+EL L+R+ K + +NLIP+N S
Sbjct: 313 QETNRR-VSFEYALLAGVNDQVEHAVELAELLREWGK---TYHVNLIPYNPIEGSEYQRP 368
Query: 314 KNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK 352
+ FA L + I ++R+ RG D +AACGQL K
Sbjct: 369 YKKAVLAFAAALESRKITASVRQTRGLDASAACGQLRNK 407
>UNIPROTKB|P0A644 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1773 "Mycobacterium tuberculosis"
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 Gene3D:3.20.20.70 EMBL:AE000516
GenomeReviews:AE000516_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0008033
EMBL:BX842581 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:B70924 PIR:C70924
RefSeq:NP_217395.1 RefSeq:NP_217396.1 RefSeq:NP_337458.1
ProteinModelPortal:P0A644 SMR:P0A644 PRIDE:P0A644
EnsemblBacteria:EBMYCT00000003622 EnsemblBacteria:EBMYCT00000071511
GeneID:887156 GeneID:887810 GeneID:925333 KEGG:mtc:MT2947
KEGG:mtu:Rv2879c KEGG:mtu:Rv2880c TubercuList:Rv2879c
TubercuList:Rv2880c ProtClustDB:CLSK792141 Uniprot:P0A644
Length = 364
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 123/357 (34%), Positives = 195/357 (54%)
Query: 3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
+L DL + ELG FRAKQL + ++D +MTDL ++R ++ +++
Sbjct: 18 HLADLDAAGRASAVAELGLPAFRAKQLAHQYYGRLIADPRQMTDLPAAVRDRIAGAMF-- 75
Query: 63 APHIM--SDQISFDG--TRKWIFH-VKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCS 117
P+++ S I+ D TRK ++ V + E+V + RNT+CIS+Q GC + C FC+
Sbjct: 76 -PNLLTASADITCDAGQTRKTLWRAVDGTMFESVLMRYPRRNTVCISSQAGCGMACPFCA 134
Query: 118 TGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKST 177
TG+ G RNL+ EI+ Q+ LR + G R ++N+V MGMGEPL NY
Sbjct: 135 TGQGGLTRNLSTAEILEQVRAGAAALR-------DDFGDR-LSNVVFMGMGEPLANYARV 186
Query: 178 IGALKLILS--DHAYGLSRRHVILSTSGIIPMIDKLAQ-ECPVELAVSLHASNNNLRNKL 234
+ A++ I + +G+S R V +ST G+ P I LA V LA+SLHA ++ LR+ L
Sbjct: 187 LAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSLHAPDDGLRDTL 246
Query: 235 VPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTS 294
VP++ ++ + E + A Y + R ++ EY ++ +ND A +L+ R +++L
Sbjct: 247 VPVNNRWRISEALDAARYYANVTGRR-VSIEYALIRDVNDQPWRA-DLLG-KRLHRVLGP 303
Query: 295 -CKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLS 350
+NLIP N P S+ S + F K + G+ T+R RG +I+AACGQL+
Sbjct: 304 LAHVNLIPLNPTPGSDWDASPKPVEREFVKRVRAKGVSCTVRDTRGREISAACGQLA 360
>GENEDB_PFALCIPARUM|PF14_0066 [details] [associations]
symbol:PF14_0066 "radical SAM protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 110/335 (32%), Positives = 167/335 (49%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMS-DQISFDGTRKWIFH 82
+R KQ+ I+K + + NKM ++ +R++LKN + I ++ +D K +F
Sbjct: 22 YRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIKELKYDRAYKVLFQ 81
Query: 83 VKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEF 141
K N IE + + +LCIS+Q+GC+ C FC+TG+ G R L + EI QL
Sbjct: 82 CKDNEKIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQL----- 136
Query: 142 KLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
+ S+G I NI MGMGEPL N +++ ++ + +S R + +ST
Sbjct: 137 -------LYFQSKGV-DIKNISFMGMGEPLAN-PYVFDSIQFFNDNNLFSISNRRINIST 187
Query: 202 SGIIPMIDKLAQECP-VELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRH 260
G++P I KL P V LA SLH+ R++LVPI+K +P E+ I + R
Sbjct: 188 VGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQLVPINKLFPFNEVFDLLDERIAKTGRR 247
Query: 261 MITFEYCMLHGINDTDIHAIELIS---LMRKNKILTSCKINLIPFNCFPN--SNLICSKN 315
+ Y ++ +ND+ HA E +S R N I + LIP+N N N +
Sbjct: 248 -VWISYILIKNLNDSKDHA-EALSDHICKRPNNIRYLYNVCLIPYNKAKNVDENFHRLDD 305
Query: 316 S-RIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+ +I F KIL +GI R G I+AACGQL
Sbjct: 306 AEKILQFEKILKKNGISFFYRNSFGYSIDAACGQL 340
>UNIPROTKB|Q8IM25 [details] [associations]
symbol:PF14_0066 "Radical SAM protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 110/335 (32%), Positives = 167/335 (49%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMS-DQISFDGTRKWIFH 82
+R KQ+ I+K + + NKM ++ +R++LKN + I ++ +D K +F
Sbjct: 22 YRLKQIMDNIYKGKIIEINKMKNIPTEIRRELKNIFHNNILSIKPIKELKYDRAYKVLFQ 81
Query: 83 VKKNI-IETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEF 141
K N IE + + +LCIS+Q+GC+ C FC+TG+ G R L + EI QL
Sbjct: 82 CKDNEKIEATSLDFGSHKSLCISSQIGCSFGCKFCATGQIGIKRQLDIDEITDQL----- 136
Query: 142 KLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
+ S+G I NI MGMGEPL N +++ ++ + +S R + +ST
Sbjct: 137 -------LYFQSKGV-DIKNISFMGMGEPLAN-PYVFDSIQFFNDNNLFSISNRRINIST 187
Query: 202 SGIIPMIDKLAQECP-VELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRH 260
G++P I KL P V LA SLH+ R++LVPI+K +P E+ I + R
Sbjct: 188 VGLLPGIKKLNNIFPQVNLAFSLHSPFTEERDQLVPINKLFPFNEVFDLLDERIAKTGRR 247
Query: 261 MITFEYCMLHGINDTDIHAIELIS---LMRKNKILTSCKINLIPFNCFPN--SNLICSKN 315
+ Y ++ +ND+ HA E +S R N I + LIP+N N N +
Sbjct: 248 -VWISYILIKNLNDSKDHA-EALSDHICKRPNNIRYLYNVCLIPYNKAKNVDENFHRLDD 305
Query: 316 S-RIKIFAKILMNSGIFVTIRKIRGNDINAACGQL 349
+ +I F KIL +GI R G I+AACGQL
Sbjct: 306 AEKILQFEKILKKNGISFFYRNSFGYSIDAACGQL 340
>UNIPROTKB|O83107 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:243276 "Treponema pallidum subsp.
pallidum str. Nichols" [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
EMBL:AE000520 GenomeReviews:AE000520_GR eggNOG:COG0820 KO:K06941
GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:D71371 RefSeq:NP_218508.1
ProteinModelPortal:O83107 IntAct:O83107 GeneID:2611395
KEGG:tpa:TP0068 PATRIC:20530073 OMA:EMVFIPD ProtClustDB:CLSK218510
Uniprot:O83107
Length = 340
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 91/263 (34%), Positives = 136/263 (51%)
Query: 24 FRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHV 83
FR Q+ +WI G +DF+ M+DLS R +L + I + + DGT K +
Sbjct: 25 FRGVQVFRWIAA-GCTDFHAMSDLSSETRARLARACVISDTRVYTTLRDVDGTLKLGIEL 83
Query: 84 K-KNIIETVFIPEK-NRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEF 141
K K +E V + ++ +R T C+S QVGC + C FC TG+ GF RNL+ EI+ Q
Sbjct: 84 KDKRRVEAVLLVDQVSRKTACLSCQVGCPMACAFCQTGQLGFARNLSASEIVEQF----- 138
Query: 142 KLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILST 201
L E+ + G + N+V MGMGEP+LN + A++++ LS + + +ST
Sbjct: 139 -LHLERCV-----GT--LDNVVFMGMGEPMLNLDAVCRAIEILSHPQGRDLSEKRITIST 190
Query: 202 SGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRH 260
SG I LA V LAVSL +N LR +L+P + L +L A RY
Sbjct: 191 SGHCRGIYSLADRALQVRLAVSLTTANAPLRARLMPRAAHDSLAKLKSAI-RYFNEKSGK 249
Query: 261 MITFEYCMLHGINDTDIHAIELI 283
+T E ++ G+N ++ HA E+I
Sbjct: 250 RVTLELALMRGVNTSERHAQEVI 272
>TAIR|locus:2091161 [details] [associations]
symbol:AT3G19630 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM;IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] InterPro:IPR004383
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 GO:GO:0005737 EMBL:CP002686 Gene3D:3.20.20.70
GO:GO:0051536 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
EMBL:BT003921 EMBL:BT005008 IPI:IPI00533080 RefSeq:NP_188597.1
UniGene:At.38376 ProteinModelPortal:Q84JV6 SMR:Q84JV6 STRING:Q84JV6
PRIDE:Q84JV6 DNASU:821500 EnsemblPlants:AT3G19630.1 GeneID:821500
KEGG:ath:AT3G19630 TAIR:At3g19630 InParanoid:Q84JV6 OMA:IFIEYIM
PhylomeDB:Q84JV6 ProtClustDB:CLSN2684692 ArrayExpress:Q84JV6
Genevestigator:Q84JV6 Uniprot:Q84JV6
Length = 372
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 77/196 (39%), Positives = 118/196 (60%)
Query: 98 RNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKR 157
R+TLCIS+QVGC + C FC+TG GF NLT GEI+ QL +++
Sbjct: 114 RSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQL--------------VHASRIA 159
Query: 158 QITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECP- 216
I NIV MGMGEPL NY + + A++++L+ + LS + + +ST GI+ I+KL + P
Sbjct: 160 DIRNIVFMGMGEPLNNYNAVVEAVRVMLNQ-PFQLSPKRITISTVGIVHAINKLHNDLPG 218
Query: 217 VELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTD 276
V LAVSLHA +R +++P ++ +PL++L+ A + S + I EY ML G+ND +
Sbjct: 219 VSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYIMLDGVNDQE 277
Query: 277 IHAIELISLMRKNKIL 292
HA L L++ +++
Sbjct: 278 QHAHLLGELLKTFQVV 293
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 78/194 (40%), Positives = 115/194 (59%)
Query: 159 ITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECP-V 217
I NIV MGMGEPL NY + + A++++L+ + LS + + +ST GI+ I+KL + P V
Sbjct: 161 IRNIVFMGMGEPLNNYNAVVEAVRVMLNQ-PFQLSPKRITISTVGIVHAINKLHNDLPGV 219
Query: 218 ELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDI 277
LAVSLHA +R +++P ++ +PL++L+ A + S + I EY ML G+ND +
Sbjct: 220 SLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNS-QQKIFIEYIMLDGVNDQEQ 278
Query: 278 HAIELISLMRKNKILTSCKINLIPFNCFPN-SNLICSKNSRIKIFAKILMNS-GIFVTIR 335
HA L L++ +++ INLIPFN + S S + F KIL + I TIR
Sbjct: 279 HAHLLGELLKTFQVV----INLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIR 334
Query: 336 KIRGNDINAACGQL 349
K G DI+ ACGQL
Sbjct: 335 KEMGQDISGACGQL 348
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.139 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 354 0.00079 117 3 11 22 0.46 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 615 (65 KB)
Total size of DFA: 232 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.75u 0.09s 29.84t Elapsed: 00:00:13
Total cpu time: 29.76u 0.09s 29.85t Elapsed: 00:00:13
Start: Thu Aug 15 13:37:50 2013 End: Thu Aug 15 13:38:03 2013